BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005174
         (710 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/731 (67%), Positives = 585/731 (80%), Gaps = 22/731 (3%)

Query: 1   MPPSSSRLILNGLSVSQLEKFIPKKWK-----------QPI------NNEHIMRINLLET 43
           M  +SSR  L GLS+SQ++KFIPKKWK            PI       NE ++  NL+ +
Sbjct: 1   MTSASSRFALRGLSMSQIQKFIPKKWKGSTKEIDLQKNYPILGECKSGNESMIE-NLVNS 59

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAA---SHDVVLDSFAHIIFCCGKVKALAQGKQLHACA 100
           LK FA +GNL KAF+ F+ I+  A+   S DVVL S + ++  C  +K+L+QGKQLH   
Sbjct: 60  LKGFASQGNLLKAFKTFSLIQRHASCSTSDDVVLHSVSSLLLSCVNLKSLSQGKQLHTLI 119

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           I+LG E++P++VPKLVTFY +F L  +A  + ENSNI +PLPWNLLIS YVR+G + EAL
Sbjct: 120 ISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEAL 179

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMY 219
             YKQM  + IR D FTYPSVLKACGE +D+ FG+ +H+ I+A C  W+LFVHN+LVSMY
Sbjct: 180 SAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMY 239

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G++  AR LF+ MLERD VSWNTMIS YASKG+WKEAF+LF +M+ EG+E+N+ITWN
Sbjct: 240 AKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWN 299

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           TIAGGC+++GNF+  LELLS MR+    +DSVAT+IGLGACSH+GA+KLG+EIHGSA+R 
Sbjct: 300 TIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRS 359

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            Y   +NV+NALITMYSRCK LRHAY LF+ T  K+IITWNSMLSGYTH+D +EE++FLF
Sbjct: 360 FYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLF 419

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           REM  SG+EPNYVTIASILPLCARVANLQHGKEFHCYILRRA F ++LLLWNSLV+MYAR
Sbjct: 420 REMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYAR 479

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
           SGKV EAK +FD +SRRDEVTYTSLIAGYGIQGEGR ALKLF+EM K  IKPDHVTMVAV
Sbjct: 480 SGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAV 539

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           LSACSHSGLV EG K FE M S YGI P+LEHFACMVDL+GRAGLL+KAKE+IT+MPY P
Sbjct: 540 LSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRP 599

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
           +SAMWATLLGAC+IH N  IGEWAAEKLLE RPENSGYYVLIANMYAA GCW KLAKVRT
Sbjct: 600 SSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRT 659

Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            MRDLGVRK PGCAWVD G+ F PFLVDDTS     ++YPLL GLTELMKDA YV KE  
Sbjct: 660 YMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGLTELMKDAEYVGKENV 719

Query: 700 CSEEEIVEEIG 710
            S ++++E IG
Sbjct: 720 GSVDDVIEAIG 730


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  977 bits (2526), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/734 (63%), Positives = 571/734 (77%), Gaps = 28/734 (3%)

Query: 3   PSSSRLILNGLSVSQLEKFIPKKWKQ---PINNEHI----------------------MR 37
           P  S  +  GL VSQ+++FIPKKWKQ   P++ +H+                      M 
Sbjct: 2   PHPSYFLPKGLFVSQIQRFIPKKWKQSIKPVDIQHVHPSASCNALESAQETFTSVDASMI 61

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRI--TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
            +LL +LK+F  RGNL  AF+  + IR+  ++AS D+++   + ++  C  VK+LA+G+Q
Sbjct: 62  DSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQ 121

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LH   I+LG E++P+LVPKLVTFY++F+L  +A  + ENSNI +P PWNLLIS YVR+GF
Sbjct: 122 LHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGF 181

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNA 214
             +AL  YKQM  + IR DNFTYPSVLKACGE +D+ FG+ VH  I+A   +WSL VHNA
Sbjct: 182 CQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNA 241

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+SMYGK G+V +AR LFDK+ ERDAVSWN+MIS YAS G+W EAF+LF  M  E +E+N
Sbjct: 242 LISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELN 301

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
           +I WNTIAGG LRTGN+KG LELLS+MR   ++LDSVA +IGLGACSH+G  KLGKEIH 
Sbjct: 302 IIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHS 361

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            A+R C+GE + V+NALITMYSRCKDL+HAY+LF++   KS+ITWNS++SG  H+D +EE
Sbjct: 362 FAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEE 421

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           ++FL REM   G+EPNYVTIAS+LPLCARVANLQHGKEFHCY+ RR  F +HLLLWN+LV
Sbjct: 422 ASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALV 481

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MYARSGKV EA+ VFD++  RD++TYTS+IAGYG+QGEG+ ALKLFEEMN  QIKPDH+
Sbjct: 482 DMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHI 541

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           TM+AVLSACSHSGLV +GQ  FE+M S+YG+ P LEHFACM DL+GRAGLLNKAKEII  
Sbjct: 542 TMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRN 601

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           MPY PT AMWATL+GAC+IHRNT IGEWAAEKLLE +PEN GYYVLIANMYAA GCW+KL
Sbjct: 602 MPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKL 661

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           AKVR  MRDLGVRK PGCAWVD G  FSPFLVDDTSN  A EIYPLL GLT +MK+AGY+
Sbjct: 662 AKVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVMKEAGYI 721

Query: 695 VKEEFCSEEEIVEE 708
             E+F S +E   E
Sbjct: 722 SSEDFGSGDETSGE 735


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/734 (63%), Positives = 572/734 (77%), Gaps = 28/734 (3%)

Query: 3   PSSSRLILNGLSVSQLEKFIPKKWKQ---PINNEHI----------------------MR 37
           P  S  +  GL VSQ+++FIPKKWKQ   P++ +H+                      M 
Sbjct: 76  PHPSYFLPKGLFVSQIQRFIPKKWKQSIKPVDIQHVHPSASCNALESAQETFTSVDASMI 135

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRI--TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
            +LL +LK+F  RGNL  AF+  + IR+  ++AS D+++   + ++  C  VK+LA+G+Q
Sbjct: 136 DSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQ 195

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LH   I+LG E++P+LVPKLVTFY++F+L  +A  + ENSNI +P PWNLLIS YVR+GF
Sbjct: 196 LHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGF 255

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNA 214
             +AL  YKQM  + IR DNFTYPSVLKACGE +D+ FG+ VH  I+A   +WSL VHNA
Sbjct: 256 CQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNA 315

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+SMYGK G+V +AR LFDK+ ERDAVSWN+MIS YAS G+W EAF+LF  M  E +E+N
Sbjct: 316 LISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELN 375

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
           +I WNTIAGG LRTGN+KG LELLS+MR   ++LDSVA +IGLGACSH+G  KLGKEIH 
Sbjct: 376 IIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHS 435

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            A+R C+GE + V+N+LITMYSRCKDL+HAY+LF++   KS+I+WNS++SG  H+D +EE
Sbjct: 436 FAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEE 495

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           ++FL REM  SG+EPNYVTIAS+LPLCARVANLQHGKEFHCY+ RR  F +HLLLWN+LV
Sbjct: 496 ASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALV 555

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MYARSGKV EA+ VFD++  RD++TYTS+IAGYG+QGEG+ ALKLFEEMN  QIKPDH+
Sbjct: 556 DMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHI 615

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           TM+AVLSACSHSGLV +GQ  FE+M S+YG+ P LEHFACM DL+GRAGLLNKAKEII  
Sbjct: 616 TMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRN 675

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           MPY PT AMWATL+GAC+IHRNT IGEWAAEKLLE +PEN GYYVLIANMYAA GCW+KL
Sbjct: 676 MPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKL 735

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           AKVR  MRDLGVRK PGCAWVD G  FSPFLVDDTSN  A EIYPLL GLT ++K+AGY+
Sbjct: 736 AKVRXFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVIKEAGYI 795

Query: 695 VKEEFCSEEEIVEE 708
             E+F S +E   E
Sbjct: 796 SSEDFGSGDETSGE 809


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/675 (68%), Positives = 550/675 (81%), Gaps = 4/675 (0%)

Query: 39  NLLETLKDFAGRGNLSKAFEAFTRIRITAAS--HDVVLDSFAHIIFCCGKVKALAQGKQL 96
           NL  +LKD A +G+L KAFE F+ I++ A+S   D +L S + +++ C  +K+L QGKQL
Sbjct: 4   NLFNSLKDLARKGHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQL 63

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           HA  I+LG E + VLVPKLVTFY+SFSL  +A  +  NS+I  PLPWNLLIS YV +G +
Sbjct: 64  HAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLH 123

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC--HEWSLFVHNA 214
            EAL  Y++M  + +R DNFTYPSVLKACGE +D+DFGR VH  I+A   H W+L+VHN+
Sbjct: 124 GEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNS 183

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           LVSMYGKFG++D ARRLF++M ERDAVSWN +IS YAS+GLWKEAF+LF EM+  G EVN
Sbjct: 184 LVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVN 243

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
           +ITWNTIAGGC++T NFKG LELLS+MR  +  LD VA +IGLGACSH+GA+KLG  IH 
Sbjct: 244 IITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHA 303

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
           SA+R C+  ++NVRNALITMYSRCKDLRHA ILFK    KS+ TWNSMLSGYTH+D +EE
Sbjct: 304 SAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEE 363

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           ++FLFREM  SG+EPNYVTIASILP CARVANLQ GKEFHCYI+RR  F ++LLLWNSLV
Sbjct: 364 ASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLV 423

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           EMYARSGKV  AK VFD + RRD+VTYTSLIAGYGIQGEG+ ALKLF+EM K++IKPD V
Sbjct: 424 EMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQV 483

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           TMVAVLSACSHSGLV EG   FE+M+++YGI P +EHF+CMVDL+GRAGLLNKAK++IT 
Sbjct: 484 TMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITS 543

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           MPY PT+AMWATL+GAC+IH NT IGEWAAEKLLE +PEN GYYVLIANM+AA G W KL
Sbjct: 544 MPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKL 603

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           A+VRT MRDLGVRK PGC WVD G+ FSPF+V DTS   + ++Y LL GLT+LMKDAGYV
Sbjct: 604 AEVRTYMRDLGVRKAPGCTWVDVGSGFSPFVVGDTSKHNSNDLYELLEGLTDLMKDAGYV 663

Query: 695 VKEEFCSEEEIVEEI 709
             E F SE+E++EEI
Sbjct: 664 AGENFSSEDEVLEEI 678


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/714 (63%), Positives = 562/714 (78%), Gaps = 11/714 (1%)

Query: 6   SRLILNGLSVSQLEKFIPKKWKQ----PIN-----NEHIMRINLLETLKDFAGRGNLSKA 56
           S ++   L +S+L+K IPK WKQ    P+      ++  M   L+ +LKDF   G+L+ A
Sbjct: 4   SSIVPRHLFLSRLQKCIPKSWKQAPQQPLQKPIFCSDASMVGVLIASLKDFVTHGHLTNA 63

Query: 57  FEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
           F+ F +I+  AAS  ++L     ++  C   K+L+QGKQLHA  I+LGL++NP+LV +LV
Sbjct: 64  FKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLV 123

Query: 117 TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
            FY + +L  +A F+ E+SN   PL WNLLIS YVR+GF+ EALCVYK M +++I  D +
Sbjct: 124 NFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEY 183

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           TYPSVLKACGE +D + G  VH  I+A   EWSLFVHNALVSMYG+FG++++AR LFD M
Sbjct: 184 TYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNM 243

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             RD+VSWNT+IS YAS+G+WKEAFQLF  MQEEGVE+NVI WNTIAGGCL +GNF+G L
Sbjct: 244 PRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGAL 303

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           +L+S+MRT   +LD++A V+GL ACSH+GA+KLGKEIHG AVR C+  ++NV+NALITMY
Sbjct: 304 QLISQMRTS-IHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMY 362

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           SRC+DL HA+ILF  T EK +ITWN+MLSGY H+D  EE  FLFREM + G+EPNYVTIA
Sbjct: 363 SRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIA 422

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           S+LPLCAR+ANLQHGKEFHCYI++   F E+LLLWN+LV+MY+RSG+V EA+ VFD +++
Sbjct: 423 SVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTK 482

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RDEVTYTS+I GYG++GEG   LKLFEEM K +IKPDHVTMVAVL+ACSHSGLV +GQ  
Sbjct: 483 RDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVL 542

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F+RM  ++GI P+LEH+ACM DL+GRAGLLNKAKE IT MPY PTSAMWATLLGAC+IH 
Sbjct: 543 FKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHG 602

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           NT +GEWAA KLLE +P++SGYYVLIANMYAA G W KLA+VRT MR+LGVRK PGCAWV
Sbjct: 603 NTEMGEWAAGKLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAPGCAWV 662

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEI 709
           D G+ FSPFLV D+SN  A EIYPL+ GL ELMKDAGYV  EE  S EE  EE+
Sbjct: 663 DVGSEFSPFLVGDSSNPHASEIYPLMDGLNELMKDAGYVRSEELVSSEEDFEEM 716


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/733 (59%), Positives = 534/733 (72%), Gaps = 71/733 (9%)

Query: 3   PSSSRLILNGLSVSQLEKFIPKKWKQ---PINNEHI----------------------MR 37
           P  S  +  GL VSQ+++FIPKKWKQ   P++ +H+                      M 
Sbjct: 2   PHPSYFLPKGLFVSQIQRFIPKKWKQSIKPVDIQHVHPSASCNALESAQETFTSVDASMI 61

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRI--TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
            +LL +LK+F  RGNL  AF+  + IR+  ++AS D+++   + ++  C  VK+LA+G+Q
Sbjct: 62  DSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQ 121

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LH   I+LG E++P+LVPKLVTFY++F+L  +A  + ENSNI +P PWNLLIS YVR+GF
Sbjct: 122 LHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGF 181

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215
             +AL  YKQM  + IR DNFTYPSVLKACGE +D+ FG+ VH  I+A            
Sbjct: 182 CQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINA------------ 229

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
                                           S YAS G+W EAF+LF  M  E +E+N+
Sbjct: 230 --------------------------------SLYASMGMWNEAFELFGSMWAEDIELNI 257

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
           I WNTIAGG LRTGN+KG LELLS+MR   ++LDSVA +IGLGACSH+G  KLGKEIH  
Sbjct: 258 IIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSF 317

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           A+R C+GE + V+NALITMYSRCKDL+HAY+LF++   KS+ITWNS++SG  H+D +EE+
Sbjct: 318 AIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEA 377

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
           +FL REM   G+EPNYVTIAS+LPLCARVANLQHGKEFHCY+ RR  F +HLLLWN+LV+
Sbjct: 378 SFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVD 437

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYARSGKV EA+ VFD++  RD++TYTS+IAGYG+QGEG+ ALKLFEEMN  QIKPDH+T
Sbjct: 438 MYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHIT 497

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           M+AVLSACSHSGLV +GQ  FE+M S+YG+ P LEHFACM DL+GRAGLLNKAKEII  M
Sbjct: 498 MIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNM 557

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           PY PT AMWATL+GAC+IHRNT IGEWAAEKLLE +PEN GYYVLIANMYAA GCW+KLA
Sbjct: 558 PYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLA 617

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
           KVR  MRDLGVRK PGCAWVD G  FSPFLVDDTSN  A EIYPLL GLT +MK+AGY+ 
Sbjct: 618 KVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVMKEAGYIS 677

Query: 696 KEEFCSEEEIVEE 708
            E+F S +E   E
Sbjct: 678 SEDFGSGDETSGE 690


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/711 (58%), Positives = 530/711 (74%), Gaps = 6/711 (0%)

Query: 1   MPPSSSRLILNGLSVSQLEKFIPKKWKQ-PINNEHIMRI-NLLETLKDFAGRGNLSKAFE 58
           M  S S+ IL GLS+S+LE FIPK WK  P++N     I ++  +LKDFA  G LSK+FE
Sbjct: 1   MSFSPSQCILKGLSISKLETFIPKSWKNLPVSNSSEFMIGSIFSSLKDFASHGQLSKSFE 60

Query: 59  AFTRIRITAA---SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           AF+ I++  +   S D++L S + ++  C K  +L  GKQLH   I+ GL ++  LV KL
Sbjct: 61  AFSLIQLRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKL 120

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           V FY+S      A  LVE SN+  P  WN+LI+ YV+   Y  A+  YKQM S+ +R DN
Sbjct: 121 VMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEAAILAYKQMVSKGVRPDN 180

Query: 176 FTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
           FT+PS+LKACGE  ++ FG  VH  I++    WSLFVHNAL+SMYG+ G+VD AR LFD 
Sbjct: 181 FTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDN 240

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           MLERDAVSWN+MIS Y+S+G+W+EAF+LF  MQ + +E+NV+TWN IAGGCLR GNF   
Sbjct: 241 MLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQA 300

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L+LLS+MR    +LD VA +IGLGACSH+GA++LGKEIHG  +R  +     V+NAL+TM
Sbjct: 301 LKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTM 360

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y+RCKD+RHAY+LF++  +KS ITWNSMLSG THL   EE+  LFRE+   GVEP+YVT 
Sbjct: 361 YARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTF 420

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           ASILPLCARVA+LQHG+EFHCYI +   F +HLLLWN+LV+MYAR+GKV EAK +F  +S
Sbjct: 421 ASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLS 480

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           ++DEVTYTSLIAGYG+QGEG  A++LFEEM + QIKPDH+TM+AVLSACSHSGLV + + 
Sbjct: 481 KKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGLVNQAEL 540

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            F  M S++G+ P+LEH+ACM DL+GR GLLNKAKEIIT+MPY PTSA+WATL+GAC IH
Sbjct: 541 LFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATLIGACCIH 600

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            N  IGEWAAEKLLE RPE+SGYYVLIANMYAA G W KLA++RT MRD GV KIPGC+W
Sbjct: 601 GNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDSGVAKIPGCSW 660

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEI 705
           VD G+ F  F V DTS+ QA E   LL  L ++MK    ++ + + + + I
Sbjct: 661 VDVGSEFISFSVGDTSSPQALESKLLLDSLYDVMKHGSLIMTDSYDTGDNI 711


>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/720 (58%), Positives = 530/720 (73%), Gaps = 24/720 (3%)

Query: 13  LSVS-QLEKFIPKKWKQ-PINNEHIMRIN------------------LLETLKDFAGRGN 52
           LS+S QL+K IP  WKQ P    H   I+                  L+ +LKDF    +
Sbjct: 10  LSLSKQLQKCIPNSWKQKPTKPFHKPLISSNNSPSSSLSSSFSMVGVLIASLKDFITYNH 69

Query: 53  LSKAFEAFTRIRIT-AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           LS AF+ F  I+   A+S D++     H++  C  +K+L+QGKQ+HA  I+LG+ +NP+L
Sbjct: 70  LSNAFKTFIHIQHHHASSFDIIFQPIKHLLLGCTNLKSLSQGKQIHAHIISLGIHQNPIL 129

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
           V KL+ FYAS  L  +A  + E SN   PL WN++ISLYV++  + +A+ VY++M S+ +
Sbjct: 130 VSKLINFYASVDLLADAQIVAECSNSFDPLHWNMVISLYVKNCLFEDAISVYRRMLSKGV 189

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARR 230
             D++TYPSVLKACGE++D D G  VH  I ++  +WSLFVHNALV MYG+FG+++VAR 
Sbjct: 190 IPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFVHNALVFMYGRFGKLEVARE 249

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LFD M  RD VSWNTMIS YAS+GLW EAF+LF  M+E G+E N+I WNTIAGGCL TGN
Sbjct: 250 LFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGN 309

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
           FKG L+L S+MR     LDSVA V+GL ACSH+GA+KLGKEIHG AVR C+  ++NV+N 
Sbjct: 310 FKGALKLFSQMRAV-IQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNT 368

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LITMYSRC+DL HAY+LF+   EK +ITWN+MLSG+ H+D +EE +FL REM R GVEPN
Sbjct: 369 LITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGVEPN 428

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRA-MFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           YVTIASILPLCAR+ANLQHGKEFHCY+++R   F  +LLLWNSLVEMY+RSGKV EA+ V
Sbjct: 429 YVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKV 488

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           FD +SR+DEVTYTS+I GYG+ G+G  ALKLF EM +  IKPDHVTMVAVL ACSHSGLV
Sbjct: 489 FDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLV 548

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            +GQ  F +M  +YGI P++EH++CMVDL+GRAGLL+KAKE+IT M   PTSA+WATL+G
Sbjct: 549 AQGQVLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIG 608

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC+IH NT IGEWAA KLLE +P++SGYY+LIANMYAA    DK A+ RT MRD G ++ 
Sbjct: 609 ACKIHGNTVIGEWAAGKLLEMKPDHSGYYLLIANMYAAANRLDKEAEARTYMRDSGAKRT 668

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEI 709
           PGCAWVD G    PFL  DTSN ++ EI P++  L  LMKDAGY   E   S EE  EE+
Sbjct: 669 PGCAWVDVGRELCPFLAGDTSNPRSCEISPMMKRLNILMKDAGYAPSEGVVSSEEDFEEL 728


>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
 gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
 gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
 gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
 gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 681

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/677 (59%), Positives = 517/677 (76%), Gaps = 5/677 (0%)

Query: 39  NLLETLKDFAGRGNLSKAFEAFTRIRI---TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
           +L ++L   A  G+L  AF+ F+ +R+   +A S D+VL S A ++  C  V+A   G Q
Sbjct: 5   SLFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQ 64

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           +HA  I+ G+E + VLVPKLVTFY++F+L+N A  ++ENS+I +PLPWN+LI+ Y ++  
Sbjct: 65  VHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNEL 124

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNA 214
           + E +  YK+M S+ IR D FTYPSVLKACGE +DV FGRVVH  I+ + ++ SL+V NA
Sbjct: 125 FEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNA 184

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+SMY +F  + +ARRLFD+M ERDAVSWN +I+ YAS+G+W EAF+LF +M   GVEV+
Sbjct: 185 LISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVS 244

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
           VITWN I+GGCL+TGN+ G L L+SRMR   T LD VA +IGL ACS +GA++LGKEIHG
Sbjct: 245 VITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHG 304

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            A+   Y   +NVRN LITMYS+CKDLRHA I+F+ T E S+ TWNS++SGY  L+ +EE
Sbjct: 305 LAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEE 364

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           ++ L REM  +G +PN +T+ASILPLCAR+ANLQHGKEFHCYILRR  F ++ +LWNSLV
Sbjct: 365 ASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLV 424

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           ++YA+SGK+  AK V DLMS+RDEVTYTSLI GYG QGEG VAL LF+EM ++ IKPDHV
Sbjct: 425 DVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHV 484

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           T+VAVLSACSHS LV EG++ F +M   YGI P L+HF+CMVDLYGRAG L KAK+II  
Sbjct: 485 TVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHN 544

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           MPY P+ A WATLL AC IH NT IG+WAAEKLLE +PEN GYYVLIANMYAA G W KL
Sbjct: 545 MPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKL 604

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD-AGY 693
           A+VRT MRDLGV+K PGCAW+D  + FS F V DTS+ +A   YPLL GL +LMKD AGY
Sbjct: 605 AEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNAGY 664

Query: 694 VVKEEFCSEEEIVEEIG 710
            + +   S+EE+++E+G
Sbjct: 665 AINKVQSSDEELLQEMG 681


>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 682

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/678 (59%), Positives = 512/678 (75%), Gaps = 6/678 (0%)

Query: 39  NLLETLKDFAGRGNLSKAFEAFTRIRI----TAASHDVVLDSFAHIIFCCGKVKALAQGK 94
           +L ++L   A  G+L  AF+ F+ +R+    +A S DVVL S A ++  C  V A   G 
Sbjct: 5   SLFKSLGHLASHGHLHDAFKTFSLLRLQSSPSAVSGDVVLHSAASLLSACVDVLAFVPGL 64

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q+HA  ++ G+E +  LVPKLVTFY++F+L+  A  + ENS+I +PLPWN+LI+ Y ++ 
Sbjct: 65  QIHAHCVSSGVEYHSALVPKLVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAKNE 124

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHN 213
            + E +  YK+M S+ IR D FTYPSVLKACGE +DV  GRVVH  I+ + ++ SL+V N
Sbjct: 125 LFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCN 184

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           AL+SMY +FG V +ARRLFD M ERDAVSWN +I+ YAS G+W EAF+LF +M+  GVEV
Sbjct: 185 ALISMYKRFGNVGIARRLFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEV 244

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           +VITWN I+GG L TGN+ G L L+SRMR   T LD VA +IGL ACS +GA++LGKEIH
Sbjct: 245 SVITWNIISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIH 304

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G A+   Y   +NVRN LITMYS+C DLR+A+I+F+ T E S+ TWNS++SGY  ++ +E
Sbjct: 305 GLAIHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQVNKSE 364

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+++L REM  +G +PN++T+ASILPLCAR+ANLQHGKEFHCYILRR  F ++ +LWNSL
Sbjct: 365 EASYLLREMLLAGFQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSL 424

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           V++YA+SGK+  AK V +LMS  DEVTYTSLI GYG QGEGRVAL LF+EM ++ IKPD 
Sbjct: 425 VDVYAKSGKIVAAKQVSNLMSEIDEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDP 484

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VTMVAVLSACSHS LV EGQ+ F +M   YGI P L+HF+CMVDLYGRAG L KAK+II 
Sbjct: 485 VTMVAVLSACSHSKLVHEGQRLFMKMQPKYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIH 544

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
           +MPY P+ A WATLL AC IH NT IG+WAAEKLLE +PEN GYYVLIANMYA  G W K
Sbjct: 545 RMPYEPSGATWATLLNACHIHGNTEIGKWAAEKLLEMKPENPGYYVLIANMYATAGSWSK 604

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD-AG 692
           LA+VRT MRDLGVRK PGCAW++  + FS F V DTSN QA + YPLL GL +LMKD AG
Sbjct: 605 LAEVRTIMRDLGVRKDPGCAWINTDSGFSLFSVGDTSNPQACDTYPLLDGLNQLMKDTAG 664

Query: 693 YVVKEEFCSEEEIVEEIG 710
           Y + EE  S+EE+++EIG
Sbjct: 665 YAINEEESSDEELLQEIG 682


>gi|51970930|dbj|BAD44157.1| hypothetical protein [Arabidopsis thaliana]
          Length = 703

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/721 (51%), Positives = 491/721 (68%), Gaps = 34/721 (4%)

Query: 1   MPPSSSRLILNGLSVSQLEKFIPKKWKQ---PI-------NNEHIMRINLLETLKDFAGR 50
           MP S SR IL GL+VS++ KFIP+ WKQ   PI       ++E + ++ L  + +     
Sbjct: 1   MPSSPSRSILRGLTVSEICKFIPQSWKQLPRPISETSKTHDDESVPQV-LFNSFRHCISH 59

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G L +AF  F+ +R  + SH+ VL S A ++  C        G+QLHA  I+ GLE + V
Sbjct: 60  GQLYEAFRTFSLLRYQSGSHEFVLYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSV 119

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           LVPKLVTFY++F+L + A  + ENS I +PLPWN+LI  Y+R+  + E++ VYK+M S+ 
Sbjct: 120 LVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKG 179

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVAR 229
           IR D FTYPSV+KAC  ++D  +GRVVH  I+ + H  +L+V NAL+SMY +FG+VDVAR
Sbjct: 180 IRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVAR 239

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           RLFD+M ERDAVSWN +I+ Y S+    EAF+L   M   GVE +++TWNTIAGGCL  G
Sbjct: 240 RLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAG 299

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY--GEYENV 347
           N+ G L  +  MR     + SVA + GL ACSH+GALK GK  H   +R C    + +NV
Sbjct: 300 NYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNV 359

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
           RN+LITMYSRC DLRHA+I+F+     S+ TWNS++SG+ + + +EE++FL +EM  SG 
Sbjct: 360 RNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGF 419

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN++T+ASILPL ARV NLQHGKEFHCYILRR  + + L+LWNSLV+MYA+SG++  AK
Sbjct: 420 HPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAK 479

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            VFD M +RD+VTYTSLI GYG  G+G VAL  F++M+++ IKPDHVTMVAVLSACSHS 
Sbjct: 480 RVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSN 539

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG   F +M  ++GI  +LEH++CMVDLY RAG L+KA++I   +PY P+SAM ATL
Sbjct: 540 LVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCATL 599

Query: 588 LGACQIHRNTGIGEWAAEK-LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           L AC IH NT IGEWAA+K LLET+PE+ G+Y+L+A+MYA TG W KL  V+T + DLGV
Sbjct: 600 LKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDLGV 659

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIV 706
           +K    A           L++  S +  +   P        M D   + +E+   EE +V
Sbjct: 660 QKAHEFA-----------LMETDSELDGENDKP--------MNDDSVINQEQSSDEERLV 700

Query: 707 E 707
           E
Sbjct: 701 E 701


>gi|15220977|ref|NP_173696.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|145323986|ref|NP_001077582.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75316139|sp|Q4V389.1|PPR55_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g22830
 gi|66792712|gb|AAY56458.1| At1g22830 [Arabidopsis thaliana]
 gi|332192171|gb|AEE30292.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332192172|gb|AEE30293.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 703

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/721 (51%), Positives = 491/721 (68%), Gaps = 34/721 (4%)

Query: 1   MPPSSSRLILNGLSVSQLEKFIPKKWKQ---PI-------NNEHIMRINLLETLKDFAGR 50
           MP S SR IL GL+VS++ KFIP+ WKQ   PI       ++E + ++ L  + +     
Sbjct: 1   MPSSPSRSILRGLTVSEICKFIPQSWKQLPRPISETSKTHDDESVPQV-LFNSFRHCISH 59

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G L +AF  F+ +R  + SH+ VL S A ++  C        G+QLHA  I+ GLE + V
Sbjct: 60  GQLYEAFRTFSLLRYQSGSHEFVLYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSV 119

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           LVPKLVTFY++F+L + A  + ENS I +PLPWN+LI  Y+R+  + E++ VYK+M S+ 
Sbjct: 120 LVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKG 179

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVAR 229
           IR D FTYPSV+KAC  ++D  +GRVVH  I+ + H  +L+V NAL+SMY +FG+VDVAR
Sbjct: 180 IRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVAR 239

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           RLFD+M ERDAVSWN +I+ Y S+    EAF+L   M   GVE +++TWNTIAGGCL  G
Sbjct: 240 RLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAG 299

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY--GEYENV 347
           N+ G L  +  MR     + SVA + GL ACSH+GALK GK  H   +R C    + +NV
Sbjct: 300 NYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNV 359

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
           RN+LITMYSRC DLRHA+I+F+     S+ TWNS++SG+ + + +EE++FL +EM  SG 
Sbjct: 360 RNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGF 419

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN++T+ASILPL ARV NLQHGKEFHCYILRR  + + L+LWNSLV+MYA+SG++  AK
Sbjct: 420 HPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAK 479

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            VFD M +RD+VTYTSLI GYG  G+G VAL  F++M+++ IKPDHVTMVAVLSACSHS 
Sbjct: 480 RVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSN 539

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG   F +M  ++GI  +LEH++CMVDLY RAG L+KA++I   +PY P+SAM ATL
Sbjct: 540 LVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCATL 599

Query: 588 LGACQIHRNTGIGEWAAEK-LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           L AC IH NT IGEWAA+K LLET+PE+ G+Y+L+A+MYA TG W KL  V+T + DLGV
Sbjct: 600 LKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDLGV 659

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIV 706
           +K    A           L++  S +  +   P        M D   + +E+   EE +V
Sbjct: 660 QKAHEFA-----------LMETDSELDGENNKP--------MNDDSVINQEQSSDEERLV 700

Query: 707 E 707
           E
Sbjct: 701 E 701


>gi|297845310|ref|XP_002890536.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336378|gb|EFH66795.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 687

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/662 (52%), Positives = 459/662 (69%), Gaps = 30/662 (4%)

Query: 1   MPPSSSRLILNGLSVSQLEKFIPKKWKQP---------INNEHIMRINLLETLKDFAGRG 51
           MP S SR IL GL+VS++ KFIP+ WKQP          ++E + ++ L E+ +     G
Sbjct: 1   MPSSPSRSILRGLTVSEIRKFIPQSWKQPPRPISETPKTHDESVPQV-LFESFRHCIAHG 59

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
              +AF  F+ +R  + SH+ VL S A ++  C        G+Q+HA  I+ GLE +PVL
Sbjct: 60  QFYEAFRTFSLLRYQSGSHEFVLYSAASLLSTCVGFSEFVPGQQIHAHCISSGLEFDPVL 119

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
           VPKLVTFY++F+L + A  + ENS+I +PLPWN+LI  YVR+  + E++ VYK+M S+ I
Sbjct: 120 VPKLVTFYSAFNLLDEAQTITENSDILHPLPWNVLIDSYVRNKRFEESVSVYKRMMSKGI 179

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARR 230
           + D FTYPSVLKACG ++D  +GRVVH  ++ + H  SL+V NAL+SMY +FG+VDVAR+
Sbjct: 180 QPDEFTYPSVLKACGALLDFAYGRVVHGSVEVSSHRCSLYVCNALISMYKRFGKVDVARK 239

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM---QEEGVEVNVITWNTIAGGCLR 287
           LFD+M ERDAVSWN++I+    K   K    L +     + E   +  I+W   A   L 
Sbjct: 240 LFDRMSERDAVSWNSVINCILLKDFEKLLSFLILSTLWCRSEYCNLEHISWRLFADRKLH 299

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
            G      EL            SVA + GL ACSH+GAL+ GK  H   +R C  E +NV
Sbjct: 300 RG-----FELCY----------SVAMINGLKACSHIGALQWGKVFHCFVIRSCCHEIDNV 344

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
           RN+LITMYSRC DLRHA+I+F+     S+ TWNS++SGY H + +EE++FL +EM  SG 
Sbjct: 345 RNSLITMYSRCSDLRHAFIVFQQIEANSLSTWNSIISGYAHNERSEETSFLLKEMLLSGF 404

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PNY+T+ASILPLCARVANLQHGKEFHCYILRR  + + L+LWNSLV+MYA+SG++  AK
Sbjct: 405 HPNYITLASILPLCARVANLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAK 464

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            VFD MS+RD+VTYTSLI GYG  G+G V+L  F++MN++ IKPDHVT+VAVLSACSHS 
Sbjct: 465 RVFDSMSKRDKVTYTSLIDGYGRLGKGEVSLAWFKDMNRSGIKPDHVTLVAVLSACSHSN 524

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG + F +M + +GI P+LEH++CMVDLY R G L +A++I  K+P  PTSAM AT+
Sbjct: 525 LVPEGHRLFTKMETGFGIRPRLEHYSCMVDLYCRVGDLAEARKIFRKIPCEPTSAMCATI 584

Query: 588 LGACQIHRNTGIGEWAAEK-LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           L AC IH NT IG WAA+K LLET+PE+ G+Y+L+A+MYA TG W+KL  V+T + DLGV
Sbjct: 585 LKACLIHGNTDIGIWAADKLLLETKPEHLGHYMLLADMYAVTGSWNKLVTVKTFLSDLGV 644

Query: 647 RK 648
           +K
Sbjct: 645 QK 646


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/621 (52%), Positives = 437/621 (70%), Gaps = 11/621 (1%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASF-SLYNNACFLVENSNIRYPLPWNLLIS 148
           L  G QLHA +++LGL ++P+L+P+L++ Y S  SL  +A  +  +S +  PLP+N+LIS
Sbjct: 89  LRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASVAADSTL--PLPYNVLIS 146

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEW 207
             +R G   +AL  Y++M    +  D FTYPSVL+AC E  ++  GR VH     A  + 
Sbjct: 147 SCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDG 206

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           +LF  NAL+SMY K G +  AR++FD M++RD VSWN+MIS+YA+ G W EA +LF  M+
Sbjct: 207 NLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMR 266

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           +EG EVN +TWNTIAGG ++  +++  + L+  M      +D V  VIGL ACS VG L+
Sbjct: 267 DEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLR 326

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
           LGKEIHG AVR C  + E+V NALITMY+RCKD+  A +LF+M     ++TWN+MLS + 
Sbjct: 327 LGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFA 386

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
             DCAEE++ +FREM   GV+PNYVT+ + L LCARVANLQHG+E H +I++   F  + 
Sbjct: 387 LSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHG-FKGYR 445

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
           LLWNSL++MY++SG++  A++VFD M   D ++YTS+IAGYG+QG+G VAL+LFE+M  +
Sbjct: 446 LLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDS 505

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            IKPDH+ MV VLSACSHSGLV+EG++ F +M   YGI PQ+EH++CM+DLY RAGLL K
Sbjct: 506 GIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEK 565

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A+E++   P+ PTS MWA L+GAC    N  IGE AA KLLE R EN+G+YVLIANMYAA
Sbjct: 566 AEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMRTENAGHYVLIANMYAA 625

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
            GCWD+LA VR  MRDLGV K PG AW D GN F+PFLV D SN  A EIY +L  L+E 
Sbjct: 626 AGCWDELATVRKLMRDLGVTKAPGLAWTDLGNGFTPFLVGDRSNPLAPEIYVVLDELSEQ 685

Query: 688 MKDAGYVVKEEFCSEEEIVEE 708
           M++         CS+ +I+ E
Sbjct: 686 MRNINN------CSDLDILAE 700



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/491 (22%), Positives = 211/491 (42%), Gaps = 81/491 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C + + L  G+ +H  A   G++ N      L++ YA      +A  + +  
Sbjct: 175 TYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGM 234

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV-------------- 181
             R  + WN +IS Y   G +AEA+ ++++M+      ++ T+ ++              
Sbjct: 235 VQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAV 294

Query: 182 ---------------------LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMY 219
                                L AC  +  +  G+ +H   +  C +    V NAL++MY
Sbjct: 295 GLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMY 354

Query: 220 GKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
            +   ++ AR LF +MLE    V+WNTM+S++A     +EA  +F EM   GV+ N +T 
Sbjct: 355 ARCKDMECARMLF-RMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVT- 412

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                                              V  L  C+ V  L+ G+E+HG  V+
Sbjct: 413 ----------------------------------VVTYLALCARVANLQHGQELHGHIVK 438

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             +  Y  + N+LI MYS+   L  A  +F    +  +I++ SM++GY        +  L
Sbjct: 439 HGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRL 498

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F +M  SG++P+++ + ++L  C+    +  G+E    ++        +  ++ ++++YA
Sbjct: 499 FEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYA 558

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGY-----GIQGEGRVALKLFEEMNKNQIKPDH 513
           R+G + +A+ + D        T  + + G       I+   R A KL E   +N     H
Sbjct: 559 RAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMRTENA---GH 615

Query: 514 VTMVAVLSACS 524
             ++A + A +
Sbjct: 616 YVLIANMYAAA 626


>gi|357119036|ref|XP_003561252.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71490-like [Brachypodium distachyon]
          Length = 692

 Score =  603 bits (1555), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 302/572 (52%), Positives = 396/572 (69%), Gaps = 8/572 (1%)

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH- 198
           PLP+N+LIS  +R GF   AL  Y+QM    +  D FTYPSVL+AC E  D+  GR VH 
Sbjct: 127 PLPYNILISSCLRHGFPRHALAAYQQMARSAVLPDAFTYPSVLRACAEAGDLALGRAVHL 186

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +       LF  NALVSMY K G +  AR++F+ M ++D VSWN+MISAY + G W +
Sbjct: 187 HGLATGVGGHLFFQNALVSMYAKSGDLVAARKVFEGMAQKDVVSWNSMISAYVAVGQWVQ 246

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A +LF  M+ E  EVN +TWNTIAG  + T + +  + L+  M +    +D V  VIG  
Sbjct: 247 AVELFERMRAEEAEVNSVTWNTIAGVYINTRDHRAAVGLIREMVSDGAAVDFVTLVIGSN 306

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           ACS VG L+LGKEIHG AVR      E+V NALITMY+RCK +  A +LFKM A   ++T
Sbjct: 307 ACSRVGWLRLGKEIHGLAVRMNCDGVESVANALITMYARCKHMDSACLLFKMLACPGVVT 366

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M++ +   D AEE++ L  EM  +GV+PNYVT+ ++L LCARVANLQHG+E H +I+
Sbjct: 367 WNTMIASFALSDEAEEASRLVHEMVGAGVQPNYVTVVTLLALCARVANLQHGQELHSHIV 426

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   F  + LLWNSL++MY++SG +  A++VFD M  RD ++YT +IAGYG+QG+G +AL
Sbjct: 427 KNG-FKGYRLLWNSLIDMYSKSGXLSVAQNVFDTMDDRDMISYTXMIAGYGMQGKGTIAL 485

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LF++M  + IKPDH++MV VLSACSHSGLV EG+K F++MTS YGI PQ+EH++CMVDL
Sbjct: 486 RLFDQMIDSGIKPDHISMVTVLSACSHSGLVTEGEKLFDKMTSSYGIKPQMEHYSCMVDL 545

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
           Y R+GLL KA+ ++ +    PTS MWA L+GAC    N  IGE AA +LLE + EN+G+Y
Sbjct: 546 YARSGLLEKAEGMLNESSSPPTSMMWAALVGACHDRGNIIIGERAARRLLEMKTENAGHY 605

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VLIANMYAA GCWD+LA VR  MRDLGV K PG AWVD  N F+PFLV D SN  A EIY
Sbjct: 606 VLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWVDLRNGFAPFLVGDRSNPLAPEIY 665

Query: 679 PLLGGLTELMKDAGYVVKEEFCSEEEIVEEIG 710
            +L  L+E M++ G       CS+ +IVEE+ 
Sbjct: 666 EVLDELSEQMRNIGN------CSDLDIVEELA 691


>gi|414884271|tpg|DAA60285.1| TPA: hypothetical protein ZEAMMB73_421255 [Zea mays]
          Length = 686

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 307/601 (51%), Positives = 407/601 (67%), Gaps = 6/601 (0%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASF-SLYNNACFLVENSNIRYPLPWNLLISLYV 151
           G QLH  +++ GL     L+P L++FY+   SL   A  L   S    P P+N+LIS  +
Sbjct: 77  GLQLHGLSLSAGLSCYSHLLPHLLSFYSHHPSLLPTASSLAAGST--SPEPYNVLISACL 134

Query: 152 RDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSL 209
             G    AL  Y++M  +  +  D FTYP VL+AC E  D+  GR VH    A   +  L
Sbjct: 135 NHGLPRHALAAYQKMVDKDAVPPDAFTYPKVLRACAETADLVLGRAVHVRAAAAGMDGHL 194

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F  NALVSMY K G +  ARR+FD M  RD VSWN+MIS YA+ G W+EA +LF +MQ E
Sbjct: 195 FFQNALVSMYAKCGDLAAARRVFDGMDNRDVVSWNSMISGYAASGQWREAVELFRQMQAE 254

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G E N +TWNTIAGG ++  +++  L L+  M      +D V  VIG  ACS  G L+LG
Sbjct: 255 GAEANSVTWNTIAGGYIQMRDYRAALGLIRDMVRGGAEVDFVTLVIGSNACSRAGWLRLG 314

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           KEIHG AVR    E ++V NA+ITMY+RC D+  A +LF+      ++ WN+ML+G+  L
Sbjct: 315 KEIHGLAVRMQCHEIDSVVNAVITMYARCNDMERALMLFRTMRCPGLVAWNTMLAGFALL 374

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
           D AE ++ LFREM  S V+PNYVT+ + L LCARVANLQHG+E H +I+R+  F  + LL
Sbjct: 375 DDAEAASRLFREMVCSDVQPNYVTVVTYLALCARVANLQHGQELHAHIIRQG-FKRYCLL 433

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
           WNSL++MY++SG++  A++VFD M  RD +++TS+IAGYG+QG+G V+L+ F++M  + I
Sbjct: 434 WNSLIDMYSKSGRLSVAQNVFDTMDDRDMISFTSMIAGYGMQGKGIVSLRFFKQMIDSGI 493

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            PD + MV VLSACSHSGLV EG++ F++M S YGI PQ+EH++CMVDLY RAGLL KA+
Sbjct: 494 MPDAIIMVTVLSACSHSGLVDEGEELFDKMVSSYGIKPQMEHYSCMVDLYARAGLLEKAE 553

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           E++ + P+ PTS M A L+GAC    N  IGE +A +LLE + EN+G+YVLIANMYAA G
Sbjct: 554 ELLNQTPFPPTSTMVAALVGACHEQGNVIIGERSARRLLEMKTENAGHYVLIANMYAAAG 613

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
           CW++LA VR  MRD+GV K PG AW D GN F+PFLV D SN  A EIY +L  LTE M+
Sbjct: 614 CWNELATVRKLMRDMGVMKAPGLAWADLGNGFTPFLVGDRSNPLAPEIYEVLDELTEQMR 673

Query: 690 D 690
           +
Sbjct: 674 N 674



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/529 (21%), Positives = 214/529 (40%), Gaps = 109/529 (20%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C +   L  G+ +H  A A G++ +      LV+ YA       A  + +  
Sbjct: 161 TYPKVLRACAETADLVLGRAVHVRAAAAGMDGHLFFQNALVSMYAKCGDLAAARRVFDGM 220

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD----- 190
           + R  + WN +IS Y   G + EA+ +++QMQ+     ++ T+ ++     +M D     
Sbjct: 221 DNRDVVSWNSMISGYAASGQWREAVELFRQMQAEGAEANSVTWNTIAGGYIQMRDYRAAL 280

Query: 191 ------------VDFGRVV---HSCIDA-----------------CHEWSLFVHNALVSM 218
                       VDF  +V   ++C  A                 CHE    V NA+++M
Sbjct: 281 GLIRDMVRGGAEVDFVTLVIGSNACSRAGWLRLGKEIHGLAVRMQCHEIDSVV-NAVITM 339

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y +   ++ A  LF  M     V+WNTM++ +A     + A +LF EM    V+ N +T 
Sbjct: 340 YARCNDMERALMLFRTMRCPGLVAWNTMLAGFALLDDAEAASRLFREMVCSDVQPNYVT- 398

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                                              V  L  C+ V  L+ G+E+H   +R
Sbjct: 399 ----------------------------------VVTYLALCARVANLQHGQELHAHIIR 424

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             +  Y  + N+LI MYS+   L  A  +F    ++ +I++ SM++GY        S   
Sbjct: 425 QGFKRYCLLWNSLIDMYSKSGRLSVAQNVFDTMDDRDMISFTSMIAGYGMQGKGIVSLRF 484

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F++M  SG+ P+ + + ++L  C+    +  G+E    ++        +  ++ +V++YA
Sbjct: 485 FKQMIDSGIMPDAIIMVTVLSACSHSGLVDEGEELFDKMVSSYGIKPQMEHYSCMVDLYA 544

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           R+G + +A+                                  E +N+    P    + A
Sbjct: 545 RAGLLEKAE----------------------------------ELLNQTPFPPTSTMVAA 570

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
           ++ AC   G V+ G++   R+  +        H+  + ++Y  AG  N+
Sbjct: 571 LVGACHEQGNVIIGERSARRLLEMKT--ENAGHYVLIANMYAAAGCWNE 617



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 15/230 (6%)

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
           F  +  LL      +  L  +A+++ L    H   +++G ++HG ++      Y ++   
Sbjct: 43  FSQLRRLLPPDAATQLLLHPIASLLHL----HRSDIRIGLQLHGLSLSAGLSCYSHLLPH 98

Query: 351 LITMYSRCKDLRHAYILFKMTA----EKSIITWNSMLSGYTHLDCAEESAFLFREMF-RS 405
           L++ YS      H  +L   ++      S   +N ++S   +      +   +++M  + 
Sbjct: 99  LLSFYS-----HHPSLLPTASSLAAGSTSPEPYNVLISACLNHGLPRHALAAYQKMVDKD 153

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            V P+  T   +L  CA  A+L  G+  H       M + HL   N+LV MYA+ G +  
Sbjct: 154 AVPPDAFTYPKVLRACAETADLVLGRAVHVRAAAAGM-DGHLFFQNALVSMYAKCGDLAA 212

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           A+ VFD M  RD V++ S+I+GY   G+ R A++LF +M     + + VT
Sbjct: 213 ARRVFDGMDNRDVVSWNSMISGYAASGQWREAVELFRQMQAEGAEANSVT 262


>gi|242043708|ref|XP_002459725.1| hypothetical protein SORBIDRAFT_02g009440 [Sorghum bicolor]
 gi|241923102|gb|EER96246.1| hypothetical protein SORBIDRAFT_02g009440 [Sorghum bicolor]
          Length = 691

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 318/676 (47%), Positives = 439/676 (64%), Gaps = 17/676 (2%)

Query: 39  NLLETLKDFAGRGNLSKAFEAFTRIR---ITAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
           +LL +L D +    L     AF+++R     AA+  ++L   A ++        L  G Q
Sbjct: 22  SLLASLSDPSALRILPAPLLAFSQLRHLLPPAAATGLLLRPIASLLHL--HRSDLRVGLQ 79

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI----RYPLPWNLLISLYV 151
           LH  +++LGL +  +L+P+L++FY+     N+  FL   S++      P P+N+LIS  +
Sbjct: 80  LHGLSLSLGLSRFSLLLPRLLSFYS-----NHPSFLPAASSLAAGSTSPEPYNVLISACL 134

Query: 152 RDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSL 209
             G    AL  Y++M  +  +  D FTYP VL+AC E  ++  GR VH    DA  +  L
Sbjct: 135 SHGLPRHALAAYQEMIDKDAVPPDAFTYPKVLRACAETANLALGRAVHVRAADAGMDGHL 194

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F  NALVSMY K G V  AR +F+ M  RD VSWN+MIS YA+ G W+EA +LF  MQ E
Sbjct: 195 FCQNALVSMYAKCGDVVAARGVFEGMEHRDVVSWNSMISGYAASGQWREAVELFRRMQAE 254

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G EVN +TWNTIAGG ++  +++  + L+  M      +D V  VIG  ACS  G L+LG
Sbjct: 255 GAEVNSVTWNTIAGGYIQMHDYRAAVGLIRDMVRGGASIDFVTLVIGSNACSRAGWLRLG 314

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           KEIHG AVR    E ++V NA+ITMY+RC D+ HA +LF+M     ++ WN+M++G+   
Sbjct: 315 KEIHGLAVRMQCHEIDSVINAVITMYARCNDMEHALMLFRMMRCPGLVAWNTMIAGFALS 374

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
           D AE ++ +FREM  S V+PNYVT+ + L LCARVANLQHG+E H +I+++  F  + LL
Sbjct: 375 DDAEAASRIFREMVCSDVQPNYVTVVTYLALCARVANLQHGRELHTHIIKQG-FKGYRLL 433

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
           WNSL++MY++SG++  A++VFD M   D +++TS+IAG+G+QG+G V+L+ F+ M  + I
Sbjct: 434 WNSLIDMYSKSGRLSVAQNVFDTMDDHDMISFTSMIAGFGMQGKGIVSLRFFKRMIDSGI 493

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            PD + MV VLSACSHSGLV EG++ F++M   YGI PQ+EH++CMVDLY RAGLL KA+
Sbjct: 494 MPDAIIMVTVLSACSHSGLVDEGEELFDKMVKSYGIKPQMEHYSCMVDLYARAGLLEKAE 553

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           E++ + P+ PTS M A L+GAC    N  IGE +A +LLE + +N+G+YVLIANMYAA G
Sbjct: 554 ELLNQTPFPPTSTMVAALVGACHEQGNIIIGERSARRLLEMKTDNAGHYVLIANMYAAAG 613

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
           CW++LA VR  MRDLGV K PG AW D GN F+PFLV D SN  A EIY +L  LTE M+
Sbjct: 614 CWNELATVRKLMRDLGVMKAPGLAWADLGNGFTPFLVGDRSNPLAPEIYEVLDELTEQMR 673

Query: 690 DAGYVVKEEFCSEEEI 705
                   E  S EE+
Sbjct: 674 SMNNCTDLEILSMEEL 689


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 308/620 (49%), Positives = 405/620 (65%), Gaps = 53/620 (8%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L  G QLHA +++LGL ++P+L+P+L++ Y S                 +P       SL
Sbjct: 89  LRLGVQLHALSLSLGLSRHPILLPRLLSVYTS-----------------HP-------SL 124

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWS 208
                  A AL  Y++M    +  D FTYPSVL+AC E  ++  GR VH     A  + +
Sbjct: 125 LPSAASVAAALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGN 184

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           LF  NAL+SMY K G +  AR++FD M++RD VSWN+MIS+YA+ G W EA +LF  M++
Sbjct: 185 LFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRD 244

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           EG E   +    + GG                       +D V  VIGL ACS VG L+L
Sbjct: 245 EGTEPVGLIREMVRGG---------------------AEVDYVTLVIGLNACSRVGWLRL 283

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GKEIHG AVR C  + E+V NALITMY+RCKD+  A +LF+M     ++TWN+MLS +  
Sbjct: 284 GKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFAL 343

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
            DCAEE++ +FREM   GV+PNYVT+ + L LCARVANLQHG+E H +I++   F  + L
Sbjct: 344 SDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHG-FKGYRL 402

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           LWNSL++MY++SG++  A++VFD M   D ++YTS+IAGYG+QG+G VAL+LFE+M  + 
Sbjct: 403 LWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSG 462

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           IKPDH+ MV VLSACSHSGLV+EG++ F +M   YGI PQ+EH++CM+DLY RAGLL KA
Sbjct: 463 IKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKA 522

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
           +E++   P+ PTS MWA L+GAC    N  IGE AA KLLE R EN+G+YVLIANMYAA 
Sbjct: 523 EEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMRTENAGHYVLIANMYAAA 582

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           GCWD+LA VR  MRDLGV K PG AW D GN F+PFLV D SN  A EIY +L  L+E M
Sbjct: 583 GCWDELATVRKLMRDLGVTKAPGLAWTDLGNGFTPFLVGDRSNPLAPEIYVVLDELSEQM 642

Query: 689 KDAGYVVKEEFCSEEEIVEE 708
           ++         CS+ +I+ E
Sbjct: 643 RNINN------CSDLDILAE 656



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 210/470 (44%), Gaps = 60/470 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C + + L  G+ +H  A   G++ N      L++ YA      +A  + +  
Sbjct: 152 TYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGM 211

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS----------RRIRG----DNFTYPSV 181
             R  + WN +IS Y   G +AEA+ ++++M+             +RG    D  T    
Sbjct: 212 VQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMVRGGAEVDYVTLVIG 271

Query: 182 LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RD 239
           L AC  +  +  G+ +H   +  C +    V NAL++MY +   ++ AR LF +MLE   
Sbjct: 272 LNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLF-RMLECPG 330

Query: 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
            V+WNTM+S++A     +EA  +F EM   GV+ N +T                      
Sbjct: 331 VVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVT---------------------- 368

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
                         V  L  C+ V  L+ G+E+HG  V+  +  Y  + N+LI MYS+  
Sbjct: 369 -------------VVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSG 415

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
            L  A  +F    +  +I++ SM++GY        +  LF +M  SG++P+++ + ++L 
Sbjct: 416 RLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLS 475

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
            C+    +  G+E    ++        +  ++ ++++YAR+G + +A+ + D        
Sbjct: 476 ACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTS 535

Query: 480 TYTSLIAGY-----GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           T  + + G       I+   R A KL E   +N     H  ++A + A +
Sbjct: 536 TMWAALVGACHDRGNIEIGERAARKLLEMRTENA---GHYVLIANMYAAA 582



 Score = 39.7 bits (91), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 96/215 (44%), Gaps = 19/215 (8%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS---FSLYNNACFLVENSNIRYP 140
           C +V  L  G++LH   +  G +   +L   L+  Y+     S+  N    +++ ++   
Sbjct: 376 CARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDM--- 432

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC---GEMMDVD--FGR 195
           + +  +I+ Y   G    AL +++QM    I+ D+    +VL AC   G +++ +  F +
Sbjct: 433 ISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNK 492

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKG 254
           +V   I    +  +  ++ ++ +Y + G ++ A  + D       +  W  ++ A   +G
Sbjct: 493 MV---ISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRG 549

Query: 255 ---LWKEAFQLFVEMQEEGVEVNVITWNT-IAGGC 285
              + + A +  +EM+ E     V+  N   A GC
Sbjct: 550 NIEIGERAARKLLEMRTENAGHYVLIANMYAAAGC 584


>gi|414589059|tpg|DAA39630.1| TPA: hypothetical protein ZEAMMB73_362613 [Zea mays]
          Length = 692

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 314/687 (45%), Positives = 434/687 (63%), Gaps = 34/687 (4%)

Query: 39  NLLETLKDFAGRGNLSKAFEAFTRIR---ITAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
           +L   L D A   +L     AF+++R     AA+  ++L   A ++             Q
Sbjct: 22  SLFAYLSDPAALHHLPAPLLAFSQLRHLLPPAAATQLLLRPIASLL-------------Q 68

Query: 96  LHACAIALGLEKNPV-----------LVPKLVTFYASF-SLYNNACFLVENSNIRYPLPW 143
           LH   + +GL+ + +           L+P+L++FY+   SL   A  L   S    P P+
Sbjct: 69  LHRSDLRIGLQLHGLSLSLGLSCYSHLLPRLLSFYSHHPSLLPAASSLAAGSTC--PEPY 126

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVH-SCI 201
           N+LIS  +  G    AL  Y +M  +  +  D FTYP VL+AC E  ++  GR VH   +
Sbjct: 127 NVLISNCLNHGLPHHALAAYHEMIDKDAVPPDAFTYPKVLRACAETGNLALGRAVHVRAV 186

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           DA  +  LF  NALVSMY K   +  AR +FD M  RD VSWN+MIS YA+ G W++A +
Sbjct: 187 DAGMDGHLFFQNALVSMYAKCWDLAAARTVFDGMEHRDVVSWNSMISGYAASGQWRKAVE 246

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF+ MQ EG E+N +TWNTIAGG ++  +++  + L+  M      +D V  VIG  ACS
Sbjct: 247 LFLRMQAEGAEMNSVTWNTIAGGYIQMHDYRAAVGLIRDMVRGGASIDFVTLVIGSNACS 306

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
             G L+LGKEIHG AVR    E ++V NA+ITMY+RC D+  A +LFKM     ++ WN+
Sbjct: 307 RAGWLRLGKEIHGLAVRMQCHEIDSVINAVITMYARCNDMERALMLFKMIRCPGLVAWNT 366

Query: 382 MLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
            ++G+  LD AE ++ LFREM   G V+PNYVT+ + L LCARVANLQHG+E H +I+++
Sbjct: 367 TIAGFALLDDAEAASRLFREMVVCGDVQPNYVTVVTYLALCARVANLQHGRELHTHIVKQ 426

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
             F  + LLWNSL++MY++SG++  A++VFD M   D +++TS+IAGYG+QG+G ++L+ 
Sbjct: 427 G-FKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDPDMISFTSMIAGYGMQGKGIISLRF 485

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F++M  + I PD + MV VLSACSHSGLV EG++ F++M   YGI PQ+EH++CMVDLY 
Sbjct: 486 FKQMIDSGIMPDAIIMVTVLSACSHSGLVGEGEELFDKMVKSYGIKPQMEHYSCMVDLYA 545

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           RAGLL KA+E++ + P+ PTS M A L+GAC    N  IGE +A +LLE + EN+G++VL
Sbjct: 546 RAGLLEKAEELLNQTPFPPTSTMVAALVGACHEQGNIIIGERSARRLLEMKTENAGHFVL 605

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           IANMYAA GCW++LA VR  MRDLGV K PG AW D GN F+PFLV D SN  A EIY +
Sbjct: 606 IANMYAAAGCWNELATVRKLMRDLGVMKAPGLAWADLGNGFTPFLVGDRSNPLAPEIYEV 665

Query: 681 LGGLTELMKDAGYVVKEEFCSEEEIVE 707
           L  LTE M +       +  S EE +E
Sbjct: 666 LDELTEQMSNMNNCSDPDILSMEEHME 692


>gi|218200374|gb|EEC82801.1| hypothetical protein OsI_27570 [Oryza sativa Indica Group]
          Length = 1194

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/601 (46%), Positives = 389/601 (64%), Gaps = 8/601 (1%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS-LYNNACFLVENSNIR 138
           I++ C   +A   G+  HA A  LGL  +P ++P+L +FY + + L      + + +   
Sbjct: 48  ILYSCTARRARRPGELAHARAATLGLAAHPSVLPRLASFYLALADLPAARAAVEQAAGKA 107

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
              PWNLLI  Y   G + + +  Y++M +  +  D FTYPSVL+ACGE+ +V  GR + 
Sbjct: 108 RAFPWNLLIWGYAGRGLWEDVILSYEKMVAWGVAADRFTYPSVLRACGELREVTIGRNIE 167

Query: 199 SCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
             I  C +   ++V NALV MY K G+++ ARR+FD M  RD VSWNTM+S YAS G W 
Sbjct: 168 QRIRRCRYGLDMYVWNALVGMYAKCGELEDARRVFDGMAVRDVVSWNTMVSVYASTGKWN 227

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT-QETYLDSVATVIG 316
           +AF L  ++       NV+TWN +A G L+ GN+  V+ L+S++R    T +DSV  VIG
Sbjct: 228 KAFDLLRQVPG----ANVVTWNAVAAGNLKAGNYDEVIRLVSQVRGYHGTGVDSVTIVIG 283

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L AC   G L +G+E+HG AVR C+   E V N+LITMYSRC  +  A +LF+  + +SI
Sbjct: 284 LKACGRTGYLSVGRELHGVAVRLCFDSLECVVNSLITMYSRCGMMSSACLLFRACSVRSI 343

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
            TWNS+L+G+  ++  EE++ +FREM   GV PN VT+ ++L L ARV +L HG+E HCY
Sbjct: 344 TTWNSLLAGFAFMEQIEEASLIFREMIGFGVCPNGVTVLTMLSLGARVGHLCHGRELHCY 403

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           IL+  + +   L+ NSLV+MY++  ++  A+ VF+LM  RD+  YTSL+ GYG+Q EG V
Sbjct: 404 ILKHEL-DSSKLMENSLVDMYSKCRQMVVAQRVFELMQFRDKHAYTSLVLGYGLQREGHV 462

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           +LKLF+EM  N I+PDHVT VAVLSACSHSGLV +GQ  F +M SI+GI P++EHF+CMV
Sbjct: 463 SLKLFDEMIVNSIEPDHVTFVAVLSACSHSGLVTQGQLLFAKMVSIFGIAPRVEHFSCMV 522

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DLY R GLL  A+ II  MP+ PT+AM ATL+ AC+IH NT +G+ AA+KLL  R  N G
Sbjct: 523 DLYCREGLLKMAEVIIDNMPFQPTAAMLATLIEACRIHGNTEVGDRAAKKLLAMRTNNPG 582

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
           +Y LIANMY A  CW +LAKVR+ M  L +  IP  + +++     P   D+  N    E
Sbjct: 583 HYRLIANMYIAAKCWPELAKVRSLMSTLELNMIPSHSLLESEYDVCPVEQDNFLNHVTYE 642

Query: 677 I 677
           +
Sbjct: 643 V 643


>gi|115474467|ref|NP_001060830.1| Os08g0112400 [Oryza sativa Japonica Group]
 gi|42408356|dbj|BAD09508.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622799|dbj|BAF22744.1| Os08g0112400 [Oryza sativa Japonica Group]
          Length = 667

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/595 (47%), Positives = 388/595 (65%), Gaps = 8/595 (1%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS-LYNNACFLVENSNIR 138
           I++ C   +A   G+  HA A  LGL  +P ++P+L +FY + + L      + + +   
Sbjct: 48  ILYSCTARRARRPGELAHARAATLGLAAHPSVLPRLASFYLALADLPAARAAVEQAAGKA 107

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
              PWNLLI  Y   G + + +  Y++M    +  D FTYPSVL+ACGE+ +V  GR + 
Sbjct: 108 RAFPWNLLIWGYAGRGLWEDVILSYEKMVGWGVAADRFTYPSVLRACGELREVTIGRNIE 167

Query: 199 SCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
             I  C +   ++V NALV MY K G+++ ARR+FD M  RD VSWNTM+SAYAS G   
Sbjct: 168 QRIRRCRYGLDMYVWNALVGMYAKCGELEDARRVFDGMAVRDVVSWNTMVSAYASTGKSN 227

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT-QETYLDSVATVIG 316
           +AF+L  ++       NV+TWN +A G L+ GN+  V+ L+S++R    T +DSV  VIG
Sbjct: 228 KAFELLQQVPG----ANVVTWNAVAAGNLKAGNYDEVIRLVSQVRGYHGTGVDSVTIVIG 283

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L AC   G L +G+E+HG AVR C+   E V N+LITMYSRC  +  A +LF+  + +SI
Sbjct: 284 LKACGRTGYLSVGRELHGVAVRLCFDSLECVVNSLITMYSRCGMMSSACLLFRACSVRSI 343

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
            TWNS+L+G+  ++  EE++ +FREM   GV PN VT+ ++L L ARV +L HG+E HCY
Sbjct: 344 TTWNSLLAGFAFMEQIEEASLIFREMIGFGVCPNGVTVLTMLSLGARVGHLCHGRELHCY 403

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           IL+  + +   L+ NSLV+MY++  ++  A+ VF+LM  RD+  YTSL+ GYG+Q EG V
Sbjct: 404 ILKHEL-DSSKLMENSLVDMYSKCRQMVVAQRVFELMQFRDKHAYTSLVLGYGLQREGHV 462

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           +LKLF+EM  N I+PDHVT VAVLSACSHSGLV +GQ  F +M SI+GI P++EHF+CMV
Sbjct: 463 SLKLFDEMIVNSIEPDHVTFVAVLSACSHSGLVTQGQLLFAKMVSIFGIAPRVEHFSCMV 522

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DLY R GLL  A+ II KMP+ PT+AM ATL+ AC+IH NT IG+ AA+KLL  R  N G
Sbjct: 523 DLYCREGLLKMAEVIIDKMPFQPTAAMLATLIEACRIHGNTEIGDRAAKKLLAMRTNNPG 582

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           +Y LIANMY A  CW +LAKVR+ M  L +  IP  + +++     P   D+  N
Sbjct: 583 HYRLIANMYIAAKCWPELAKVRSLMSTLELNMIPSHSLLESEYDVCPVEQDNFLN 637


>gi|413941642|gb|AFW74291.1| hypothetical protein ZEAMMB73_987423 [Zea mays]
          Length = 671

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/625 (44%), Positives = 393/625 (62%), Gaps = 14/625 (2%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            + +I  C   +A   G+Q HA A+ALGL  +P ++P L +FY +      A   VE + 
Sbjct: 49  LSSLIRYCTTKRARRPGEQAHARAVALGLGAHPSVLPGLASFYIALGDLPAAQASVERAA 108

Query: 137 IR-YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +    PWNLLI  Y   G + + +  Y++M +  +  D FTYPSVL+ CGE+ D   GR
Sbjct: 109 GKARAFPWNLLIWGYADRGLWDDVILAYQKMLALGVAADRFTYPSVLRTCGELRDSAIGR 168

Query: 196 VVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +   I    +   ++V NALV MY K G++  ARR+FD M  RD VSWN+M+S Y S G
Sbjct: 169 GIEKRILTWRYGLDMYVWNALVGMYAKCGEMKDARRVFDGMPARDVVSWNSMVSGYVSAG 228

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT-QETYLDSVAT 313
           +W EAF L   +       N++ WN +  G  + GN+  V+ L+S+MRT     LD V  
Sbjct: 229 MWGEAFDLLQLVPG----ANIVAWNAVVAGNFKAGNYGEVMRLVSQMRTCGGPGLDFVTV 284

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           VIGL AC+  G L++GKE+H ++VR C+   E V ++LITMYSRC+ +R AY+LF+  + 
Sbjct: 285 VIGLRACARGGYLRIGKELHAASVRLCFDRLERVESSLITMYSRCQMMRSAYLLFRTCST 344

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +SI+TWNS+L+G+  +D  EE+ F+FREM  S V PN VT+ ++L L AR  +L HG+E 
Sbjct: 345 QSIVTWNSLLAGFGFMDQVEEAIFVFREMIYSSVFPNDVTVLTMLSLSARFGHLCHGREM 404

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           HCYI +  +   ++L  NSLV+MY++SG++  A  VFD M  +D   YTSLI GYG+Q E
Sbjct: 405 HCYIFKHGLGASNILQ-NSLVDMYSKSGQMATANRVFDQMQCQDRHAYTSLILGYGMQRE 463

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G ++LKLF+EM  N IK DHVTMVAVLSACSHSGLV +GQ +F +M  ++ I P++EHF+
Sbjct: 464 GHLSLKLFDEMIVNNIKVDHVTMVAVLSACSHSGLVAQGQLRFAQMYDVFCIAPRVEHFS 523

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVDLY R GLL+ A+EI+ KMP+ PT+AM ATL+ AC+IH  T IG+ AA++LL  R  
Sbjct: 524 CMVDLYCREGLLSMAEEIVNKMPFQPTAAMLATLIEACRIHGKTEIGDRAAKRLLAMRTN 583

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N G+Y LIANMY +   W +LAKVR+ M  + +  IP  + +++     P   D   N  
Sbjct: 584 NPGHYKLIANMYISAKRWPELAKVRSLMSVMELNMIPTHSLLESEYEICPIEKDYCLN-- 641

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEE 698
                 L GGL++ M D  +   EE
Sbjct: 642 ----RCLHGGLSDDMTDTDFSSSEE 662


>gi|357139479|ref|XP_003571309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Brachypodium distachyon]
          Length = 668

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 291/614 (47%), Positives = 391/614 (63%), Gaps = 15/614 (2%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIR-YPLPWNLLISLYV 151
           G Q+HA A+ALGL  +P ++P+LV+FY +      A   VE +  +    PWNLLI  Y 
Sbjct: 62  GAQVHARAVALGLGAHPSVLPRLVSFYITLGDRPAARAAVEQAAGKARAFPWNLLIWGYA 121

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLF 210
            D  + + +  Y +M +  +  D FTYPSVL+ACGE+ +V  GR ++  I    H+  + 
Sbjct: 122 GDRLWKDVIMAYDRMVALGVDADRFTYPSVLRACGELREVSVGRKINRRIRRRRHDLDMH 181

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V NALV MY KFG+++ ARR+FD M  RD VSWNTM+S YAS G+W EAF+L  ++    
Sbjct: 182 VWNALVGMYVKFGELEDARRVFDGMAGRDVVSWNTMVSGYASTGMWGEAFELLQQVPG-- 239

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT-QETYLDSVATVIGLGACSHVGALKLG 329
              N +TWN +A G L+ GN+  V  LLS+MR      +DSV+ +IGL AC   G+L++G
Sbjct: 240 --ANTVTWNAVAAGNLKAGNYDEVFRLLSQMRNCHGPGVDSVSLLIGLKACGKSGSLRVG 297

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +E+HG AVR  +   E V N+LITMYSRC+ +  A +LF+M   +SII WNS+L G+  +
Sbjct: 298 REVHGVAVRLYFDGLECVVNSLITMYSRCRIMSSAELLFRMCLVRSIIAWNSLLVGFVFM 357

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
           D  EE++ LFREM  SGV PN VT+ +++ L AR  +L HG+E HCYILR  +    LL 
Sbjct: 358 DKVEEASSLFREMIGSGVCPNDVTVLTLVSLAARFGHLCHGRELHCYILRHGLGGSKLL- 416

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            NSLV+MY++S  +  ++ VFD M  RD+  YTSLI GYG+Q EG V+LKLF+EM  N I
Sbjct: 417 QNSLVDMYSKSRHMTASQRVFDRMELRDKHAYTSLILGYGMQREGHVSLKLFDEMIANCI 476

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +PDHVTMVA LSACSHSGLV +GQ  F +M +++G  P++EHF+CMVDLY R GLL  A+
Sbjct: 477 EPDHVTMVAALSACSHSGLVTQGQLLFTKMFAVFGTAPRVEHFSCMVDLYCREGLLKMAE 536

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           EII KM + PT AM ATL+ AC IH N  IGE AA+KLL  R  N G+Y LIANMY    
Sbjct: 537 EIIGKMQFQPTPAMLATLVEACLIHGNIEIGERAAKKLLTMRTNNPGHYKLIANMYIFAK 596

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
           CW +LAKVR+ M  + +  IP  + +++     P    +  N     +Y    GL++   
Sbjct: 597 CWPELAKVRSLMSTIELAMIPSHSLLESVYDICP---GEQDNYLKHGMY---CGLSDRTT 650

Query: 690 DAGYVVKEEF-CSE 702
           D      EE  CSE
Sbjct: 651 DTDSSSSEEVKCSE 664


>gi|242080281|ref|XP_002444909.1| hypothetical protein SORBIDRAFT_07g001200 [Sorghum bicolor]
 gi|241941259|gb|EES14404.1| hypothetical protein SORBIDRAFT_07g001200 [Sorghum bicolor]
          Length = 675

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/631 (44%), Positives = 390/631 (61%), Gaps = 15/631 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF-SLYNNACFLVEN 134
           S + +I  C   +A   G Q HA A+ALG   +P ++P+LVTFY +   L      +   
Sbjct: 52  SLSSLIRSCTSQRARRPGDQAHARAVALGFGAHPSVLPRLVTFYITLGDLTAARAAVERA 111

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
                  PWNLLI  Y     + + +  Y++M +  +  D FTYPSVL+ACGE+ D   G
Sbjct: 112 EGKARAFPWNLLIWGYADREQWDDVVLAYRRMLALGVAADRFTYPSVLRACGELRDASVG 171

Query: 195 RVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +   + +  +   ++V NALV MY K  +++ ARR+FD M  RD VSWN M+S YAS 
Sbjct: 172 REIEQRVRSWGYGLDMYVWNALVGMYAKCEEMEDARRVFDGMPARDVVSWNAMVSGYASA 231

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT-QETYLDSVA 312
           G+W EAF L     +     N++TWN +A G L+ GN   V+ LLS+MR+     LDSV 
Sbjct: 232 GMWGEAFDLL----QWFPGANIVTWNAVAAGNLKAGNDSEVIRLLSQMRSFHGPGLDSVT 287

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            VIGL AC+  G LK+GKE+H  ++R  +   E+V ++LITMYSRC+ +  AY LF+  +
Sbjct: 288 VVIGLRACARSGYLKIGKELHAVSIRLRFDRLEHVESSLITMYSRCQRMSSAYRLFRTCS 347

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            +S++ WNS+L+G+  +D  EE+  LFREM  S V PN VT+ ++L L AR  +L HG+E
Sbjct: 348 TQSVVIWNSLLAGFGFMDQVEEAILLFREMIYSSVFPNDVTVLTMLSLSARFGHLCHGRE 407

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HCYI++  +   ++L  NSLV+MY++S ++  A+ VFD M  +D   YTSLI GYG+Q 
Sbjct: 408 MHCYIIKHGLGASNILQ-NSLVDMYSKSRQMAAAQRVFDQMQCQDRHAYTSLILGYGMQR 466

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
           EG ++LKLF+EM  N IK DHVTMVAVLSACSHSGLV +GQ +F  M  ++ I P++EHF
Sbjct: 467 EGHLSLKLFDEMIANNIKVDHVTMVAVLSACSHSGLVTQGQLRFAEMFDVFCIAPRVEHF 526

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +CMVDLY R GLL+ A+EII KMP  PT+AM ATL+ AC+IH  T IG+ AA++LL  R 
Sbjct: 527 SCMVDLYCREGLLSMAEEIINKMPLQPTAAMLATLIEACRIHGKTEIGDRAAKRLLAMRT 586

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            N G+Y  IANMY +   W +LAK+R+ M  + +  IP  + +++     P   D   N 
Sbjct: 587 NNPGHYKSIANMYISAKRWPELAKLRSLMSVMELNMIPTRSLLESEYDICPVEQDYCLN- 645

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEF-CSE 702
                  L GGL+  M D  +   EE  C+E
Sbjct: 646 -----RSLHGGLSYDMTDTDFSSSEEVKCNE 671


>gi|3287676|gb|AAC25504.1| Contains similarity to membrane associated salt-inducible protein
           homolog IG002N01.30 gb|2191151 from A. thaliana BAC
           gb|AF007269. EST gb|F14461 comes from this gene. Gene
           continues on the 3' end of BAC F19G10 gb|AF000657 gene
           F19G10.21 [Arabidopsis thaliana]
          Length = 435

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/436 (49%), Positives = 293/436 (67%), Gaps = 14/436 (3%)

Query: 1   MPPSSSRLILNGLSVSQLEKFIPKKWKQ---PI-------NNEHIMRINLLETLKDFAGR 50
           MP S SR IL GL+VS++ KFIP+ WKQ   PI       ++E + ++ L  + +     
Sbjct: 1   MPSSPSRSILRGLTVSEICKFIPQSWKQLPRPISETSKTHDDESVPQV-LFNSFRHCISH 59

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G L +AF  F+ +R  + SH+ VL S A ++  C        G+QLHA  I+ GLE + V
Sbjct: 60  GQLYEAFRTFSLLRYQSGSHEFVLYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSV 119

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           LVPKLVTFY++F+L + A  + ENS I +PLPWN+LI  Y+R+  + E++ VYK+M S+ 
Sbjct: 120 LVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKG 179

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVAR 229
           IR D FTYPSV+KAC  ++D  +GRVVH  I+ + H  +L+V NAL+SMY +FG+VDVAR
Sbjct: 180 IRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVAR 239

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           RLFD+M ERDAVSWN +I+ Y S+    EAF+L   M   GVE +++TWNTIAGGCL  G
Sbjct: 240 RLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAG 299

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY--ENV 347
           N+ G L  +  MR     + SVA + GL ACSH+GALK GK  H   +R C   +  +NV
Sbjct: 300 NYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNV 359

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
           RN+LITMYSRC DLRHA+I+F+     S+ TWNS++SG+ + + +EE++FL +EM  SG 
Sbjct: 360 RNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGF 419

Query: 408 EPNYVTIASILPLCAR 423
            PN++T+ASILPL AR
Sbjct: 420 HPNHITLASILPLFAR 435



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 155/356 (43%), Gaps = 44/356 (12%)

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRL----FDKMLERDAVSWNTMISAYASKGLWKEAF 260
           HE+ L+   +L+S    F +    ++L        LE D+V    +++ Y++  L  EA 
Sbjct: 79  HEFVLYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEA- 137

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
           Q   E  E    ++ + WN + G  +R   F+  + +  RM ++    D       + AC
Sbjct: 138 QTITENSEI---LHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKAC 194

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           + +     G+ +HGS     +     V NALI+MY R   +  A  LF   +E+  ++WN
Sbjct: 195 AALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWN 254

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI----------------------- 417
           ++++ YT  +   E+  L   M+ SGVE + VT  +I                       
Sbjct: 255 AIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNC 314

Query: 418 ------------LPLCARVANLQHGKEFHCYILRRAMFNEHL-LLWNSLVEMYARSGKVP 464
                       L  C+ +  L+ GK FHC ++R   F+  +  + NSL+ MY+R   + 
Sbjct: 315 NVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNVRNSLITMYSRCSDLR 374

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
            A  VF  +      T+ S+I+G+           L +EM  +   P+H+T+ ++L
Sbjct: 375 HAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASIL 430



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 9/248 (3%)

Query: 285 CLRTGNFKGVLELLSRMRTQ----ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           C+  G         S +R Q    E  L S A++  L  C        G+++H   +   
Sbjct: 56  CISHGQLYEAFRTFSLLRYQSGSHEFVLYSSASL--LSTCVGFNEFVPGQQLHAHCISSG 113

Query: 341 YGEYENVR-NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
             E+++V    L+T YS    L  A  + + +     + WN ++  Y      +ES  ++
Sbjct: 114 L-EFDSVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVY 172

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           + M   G+  +  T  S++  CA + +  +G+  H  I   +    +L + N+L+ MY R
Sbjct: 173 KRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSI-EVSSHRCNLYVCNALISMYKR 231

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            GKV  A+ +FD MS RD V++ ++I  Y  + +   A KL + M  + ++   VT   +
Sbjct: 232 FGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTI 291

Query: 520 LSACSHSG 527
              C  +G
Sbjct: 292 AGGCLEAG 299


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 369/672 (54%), Gaps = 42/672 (6%)

Query: 42  ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           ET+  +   G  +KA   + +++ T  + D ++  F  +I  CG    L  G+++H   I
Sbjct: 90  ETIIGYVKNGFWNKALRLYYQMQRTGINPDKLV--FLSVIKACGSQSDLQAGRKVHEDII 147

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
           A G E + ++   L + Y       NA  + +    R  + WN +I+ Y ++G   EAL 
Sbjct: 148 ARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALA 207

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           ++ +MQ   I+ ++ T  SV+  C  ++ ++ G+ +H   I +  E  + V N LV+MY 
Sbjct: 208 LFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYA 267

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G V+ A +LF++M  RD                                   V +WN 
Sbjct: 268 KCGNVNTAHKLFERMPIRD-----------------------------------VASWNA 292

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           I GG          L   +RM+ +    +S+  V  L AC+H+ AL+ G++IHG A+R  
Sbjct: 293 IIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSG 352

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +   + V NAL+ MY++C ++  AY LF+   +K+++ WN+++SGY+      E+  LF 
Sbjct: 353 FESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFI 412

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           EM   G++P+   I S+LP CA    L+ GK+ H Y +R   F  ++++   LV++YA+ 
Sbjct: 413 EMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSG-FESNVVVGTGLVDIYAKC 471

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G V  A+ +F+ M  +D V++T++I  YGI G G  AL LF +M +   K DH+   A+L
Sbjct: 472 GNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAIL 531

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           +ACSH+GLV +G + F+ M S YG+ P+LEH+AC+VDL GRAG L++A  II  M   P 
Sbjct: 532 TACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPD 591

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           + +W  LLGAC+IH N  +GE AA+ L E  P+N+GYYVL++N+YA    W+ +AK+R  
Sbjct: 592 ANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKM 651

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC 700
           M++ GV+K PGC+ V        FLV D ++ Q+++IY +L  L E M+ AGYV      
Sbjct: 652 MKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLA 711

Query: 701 ---SEEEIVEEI 709
               EEE  E I
Sbjct: 712 LQDVEEEAKENI 723



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 232/462 (50%), Gaps = 42/462 (9%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           W   I  YV++GF+ +AL +Y QMQ   I  D   + SV+KACG   D+  GR VH  I 
Sbjct: 88  WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147

Query: 203 A-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           A   E  + V  AL SMY K G ++ AR++FD+M +RD                      
Sbjct: 148 ARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRD---------------------- 185

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                        V++WN I  G  + G     L L S M+      +S   V  +  C+
Sbjct: 186 -------------VVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCA 232

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
           H+ AL+ GK+IH  A+R        V N L+ MY++C ++  A+ LF+    + + +WN+
Sbjct: 233 HLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNA 292

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++ GY+      E+   F  M   G++PN +T+ S+LP CA +  L+ G++ H Y +R  
Sbjct: 293 IIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSG 352

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            F  + ++ N+LV MYA+ G V  A  +F+ M +++ V + ++I+GY   G    AL LF
Sbjct: 353 -FESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALF 411

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
            EM    IKPD   +V+VL AC+H  L +E  KQ    T   G    +     +VD+Y +
Sbjct: 412 IEMQAQGIKPDSFAIVSVLPACAHF-LALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAK 470

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
            G +N A+++  +MP     + W T++ A  IH   G GE A
Sbjct: 471 CGNVNTAQKLFERMPEQDVVS-WTTMILAYGIH---GHGEDA 508



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 174/361 (48%), Gaps = 45/361 (12%)

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           +  +AV W   I  Y   G W +A +L+ +MQ                   RTG     L
Sbjct: 81  IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQ-------------------RTGINPDKL 121

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
             LS ++                AC     L+ G+++H   +   +     V  AL +MY
Sbjct: 122 VFLSVIK----------------ACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMY 165

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++C  L +A  +F    ++ +++WN++++GY+      E+  LF EM  +G++PN  T+ 
Sbjct: 166 TKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLV 225

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           S++P+CA +  L+ GK+ HCY +R  + ++ +L+ N LV MYA+ G V  A  +F+ M  
Sbjct: 226 SVMPVCAHLLALEQGKQIHCYAIRSGIESD-VLVVNGLVNMYAKCGNVNTAHKLFERMPI 284

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RD  ++ ++I GY +  +   AL  F  M    IKP+ +TMV+VL AC+H   + +GQ+ 
Sbjct: 285 RDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQ- 343

Query: 536 FERMTSIYGIFPQLEHF----ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
                  Y I    E        +V++Y + G +N A ++  +MP     A  A + G  
Sbjct: 344 ----IHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYS 399

Query: 592 Q 592
           Q
Sbjct: 400 Q 400


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/629 (37%), Positives = 356/629 (56%), Gaps = 42/629 (6%)

Query: 87  VKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
            K+  QG+QLHA  I+   LE N  L  KL  FYA   L + A  + +   ++    WN 
Sbjct: 72  TKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNF 131

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
           +I  Y  +G   ++L +Y++M     R DNFTYP VLKACG+++ V+ GR VHS +  C 
Sbjct: 132 MIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCG 191

Query: 206 -EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            E  ++V N+L++MY KFG +  AR +FD+M ERD  SWNTMIS YA       AF +F 
Sbjct: 192 LESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFD 251

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
            M + G+  +  T                +L LLS                   AC+ + 
Sbjct: 252 LMGKAGLFADCTT----------------LLGLLS-------------------ACADLK 276

Query: 325 ALKLGKEIHGSAVRGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           A+K GK IHG AVR   G Y     N+LI MY  C  +  A  LF+    K  ++WNSM+
Sbjct: 277 AVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMI 336

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
            GY     A ES  LFR M   G  P+ VT  ++L  C ++A L++G   H Y++++  F
Sbjct: 337 LGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKG-F 395

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           + + ++  +LV+MY++ G +  ++ VFD M  +  V++++++AGYG+ G GR A+ + + 
Sbjct: 396 DANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDG 455

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M  N + PD+    ++LSACSH+GLVVEG++ F +M   Y + P L H++CMVDL GRAG
Sbjct: 456 MKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAG 515

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
            L++A  II  M   PTS +WA LL A ++H+N  + E +A+K+ +  P+    Y+ ++N
Sbjct: 516 HLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSN 575

Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGG 683
           +YAA   WD + +VR  +R  G++K PGC++++  N+   FLV D S+ Q ++IY  L  
Sbjct: 576 IYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNE 635

Query: 684 LTELMKDAGYVVKEE---FCSEEEIVEEI 709
           L + +K+AGY        +  EEE+ E++
Sbjct: 636 LKQQLKEAGYKPDTSLVFYDVEEEVKEKM 664



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 177/400 (44%), Gaps = 37/400 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  CG +  +  G+++H+  +  GLE +  +   L+  YA F     A  + +  
Sbjct: 163 TYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRM 222

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN +IS Y ++     A  V+  M    +  D  T   +L AC ++  V  G+
Sbjct: 223 AERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGK 282

Query: 196 VVH--SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           V+H  +  ++   ++ F  N+L+ MY     +  ARRLF+++  +D VSWN+MI  YA  
Sbjct: 283 VIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARN 342

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G   E+ +LF  M  +G   + +T+  +                                
Sbjct: 343 GDAFESLRLFRRMALDGSGPDQVTFIAV-------------------------------- 370

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              LGAC  + AL+ G  IH   V+  +     V  AL+ MYS+C  L  +  +F    +
Sbjct: 371 ---LGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPD 427

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           KS+++W++M++GY       E+  +   M  + V P+     SIL  C+    +  GKE 
Sbjct: 428 KSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEI 487

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
              + +       L  ++ +V++  R+G + EA  +   M
Sbjct: 488 FYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTM 527



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 111/231 (48%), Gaps = 2/231 (0%)

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA-LITMYSRCKDLR 362
           Q+  L S+     L + ++  + K G+++H   +     E     N  L   Y+ C  + 
Sbjct: 53  QQYPLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMS 112

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
            A ++F     K+   WN M+ GY       +S  L+REM   G   +  T   +L  C 
Sbjct: 113 QAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACG 172

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            +  ++ G+  H  ++   + ++ + + NSL+ MYA+ G +  A+ VFD M+ RD  ++ 
Sbjct: 173 DLLLVEIGRRVHSEVVVCGLESD-IYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWN 231

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           ++I+GY    +   A  +F+ M K  +  D  T++ +LSAC+    V EG+
Sbjct: 232 TMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGK 282



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 379 WNSMLSGYTHLDCAE--ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           +NS  S ++  D A+  E +   RE          +   ++L       + + G++ H +
Sbjct: 25  YNSFTSHFSQGDVAQMVERSLSMREHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHAH 84

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           ++  ++   +  L   L   YA  G + +A+ +FD +  ++   +  +I GY   G    
Sbjct: 85  MISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMK 144

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           +L L+ EM     + D+ T   VL AC    L+VE  ++      + G+   +     ++
Sbjct: 145 SLVLYREMLCFGQRADNFTYPFVLKACGDL-LLVEIGRRVHSEVVVCGLESDIYVGNSLL 203

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
            +Y + G +  A+ +  +M     ++ W T++     + ++G
Sbjct: 204 AMYAKFGDMGTARMVFDRMAERDLTS-WNTMISGYAKNADSG 244


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/665 (34%), Positives = 368/665 (55%), Gaps = 47/665 (7%)

Query: 73   VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
            VLD F  ++  C K   L+Q  Q+H+  I  G  ++  L  ++V+ YA F L ++A  + 
Sbjct: 871  VLDFFNDLLQQCSK-SHLSQ--QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVF 927

Query: 133  ENSNIR---YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            E S I      L WN ++   V  G+  EAL +Y +M+   +  D FT+P V++AC  M 
Sbjct: 928  EVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMG 987

Query: 190  DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
                 R VH   ++   +W+L V N L+ MYGK G++D AR++F++M  R  VSWNTM+S
Sbjct: 988  SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVS 1047

Query: 249  AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
             YA       A ++F  M   G+E N++TW ++     R G     +EL  RMR +    
Sbjct: 1048 GYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGA 1107

Query: 309  DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
             + A  + L     + A   GK IHG  V+G +  Y  V+N+LI +Y +  ++  A ILF
Sbjct: 1108 TAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILF 1167

Query: 369  KMTAEKSIITWNSMLSGYTHLD-C------------------------------------ 391
                 K+I++WN+++S Y  L  C                                    
Sbjct: 1168 LEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASK 1227

Query: 392  --AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
               EE+  LFR M  + V+ N VTIAS+L +CA +A L  G+E H +++R ++ + ++L+
Sbjct: 1228 GQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVR-SLMDGNILV 1286

Query: 450  WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
             N L+ MY +SG   E   VF+ +  +D +++ +++AGYGI G G  A++ F++M K+  
Sbjct: 1287 GNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGF 1346

Query: 510  KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            +PD VT VAVLSACSH+GLV EG++ F++M   + + PQ+EH+ACMVDL GRAGLL +A 
Sbjct: 1347 EPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEAS 1406

Query: 570  EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
            +++  MP  P + +W  LL +C++H+NT + E  A ++     E +G Y+L++N+YAA+G
Sbjct: 1407 KVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASG 1466

Query: 630  CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
             W+  AKVR   +  G++K PG +W+        F   +T + + +E+Y +L  L   M+
Sbjct: 1467 RWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQME 1526

Query: 690  DAGYV 694
              GY+
Sbjct: 1527 VEGYI 1531


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/665 (34%), Positives = 368/665 (55%), Gaps = 47/665 (7%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           VLD F  ++  C K   L+Q  Q+H+  I  G  ++  L  ++V+ YA F L ++A  + 
Sbjct: 33  VLDFFNDLLQQCSK-SHLSQ--QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVF 89

Query: 133 ENSNIR---YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
           E S I      L WN ++   V  G+  EAL +Y +M+   +  D FT+P V++AC  M 
Sbjct: 90  EVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMG 149

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
                R VH   ++   +W+L V N L+ MYGK G++D AR++F++M  R  VSWNTM+S
Sbjct: 150 SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVS 209

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            YA       A ++F  M   G+E N++TW ++     R G     +EL  RMR +    
Sbjct: 210 GYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGA 269

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
            + A  + L     + A   GK IHG  V+G +  Y  V+N+LI +Y +  ++  A ILF
Sbjct: 270 TAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILF 329

Query: 369 KMTAEKSIITWNSMLSGYTHLD-C------------------------------------ 391
                K+I++WN+++S Y  L  C                                    
Sbjct: 330 LEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASK 389

Query: 392 --AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              EE+  LFR M  + V+ N VTIAS+L +CA +A L  G+E H +++R ++ + ++L+
Sbjct: 390 GQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVR-SLMDGNILV 448

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N L+ MY +SG   E   VF+ +  +D +++ +++AGYGI G G  A++ F++M K+  
Sbjct: 449 GNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGF 508

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +PD VT VAVLSACSH+GLV EG++ F++M   + + PQ+EH+ACMVDL GRAGLL +A 
Sbjct: 509 EPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEAS 568

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           +++  MP  P + +W  LL +C++H+NT + E  A ++     E +G Y+L++N+YAA+G
Sbjct: 569 KVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASG 628

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W+  AKVR   +  G++K PG +W+        F   +T + + +E+Y +L  L   M+
Sbjct: 629 RWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQME 688

Query: 690 DAGYV 694
             GY+
Sbjct: 689 VEGYI 693


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/665 (34%), Positives = 368/665 (55%), Gaps = 47/665 (7%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           VLD F  ++  C K   L+Q  Q+H+  I  G  ++  L  ++V+ YA F L ++A  + 
Sbjct: 33  VLDFFNDLLQQCSK-SHLSQ--QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVF 89

Query: 133 ENSNIR---YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
           E S I      L WN ++   V  G+  EAL +Y +M+   +  D FT+P V++AC  M 
Sbjct: 90  EVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMG 149

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
                R VH   ++   +W+L V N L+ MYGK G++D AR++F++M  R  VSWNTM+S
Sbjct: 150 SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVS 209

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            YA       A ++F  M   G+E N++TW ++     R G     +EL  RMR +    
Sbjct: 210 GYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGA 269

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
            + A  + L     + A   GK IHG  V+G +  Y  V+N+LI +Y +  ++  A ILF
Sbjct: 270 TAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILF 329

Query: 369 KMTAEKSIITWNSMLSGYTHLD-C------------------------------------ 391
                K+I++WN+++S Y  L  C                                    
Sbjct: 330 LEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASK 389

Query: 392 --AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              EE+  LFR M  + V+ N VTIAS+L +CA +A L  G+E H +++R ++ + ++L+
Sbjct: 390 GQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVR-SLMDGNILV 448

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N L+ MY +SG   E   VF+ +  +D +++ +++AGYGI G G  A++ F++M K+  
Sbjct: 449 GNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGF 508

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +PD VT VAVLSACSH+GLV EG++ F++M   + + PQ+EH+ACMVDL GRAGLL +A 
Sbjct: 509 EPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEAS 568

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           +++  MP  P + +W  LL +C++H+NT + E  A ++     E +G Y+L++N+YAA+G
Sbjct: 569 KVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASG 628

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W+  AKVR   +  G++K PG +W+        F   +T + + +E+Y +L  L   M+
Sbjct: 629 RWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQME 688

Query: 690 DAGYV 694
             GY+
Sbjct: 689 VEGYI 693


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/603 (37%), Positives = 348/603 (57%), Gaps = 8/603 (1%)

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNAC-FLVENSNIRYPLP----WNLLISLYVRDGFYAE 158
           G++ + V    +++ YA    +  A  + +E   ++   P    W  LI+   ++G+  E
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH-EWSLFVHNALV 216
           AL V+++M    ++ ++ T  S + AC  +  +  GR +H  CI     +  L V N+LV
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV 405

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
             Y K   V+VARR F  + + D VSWN M++ YA +G  +EA +L  EM+ +G+E ++I
Sbjct: 406 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDII 465

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           TWN +  G  + G+ K  LE   RM +     ++      L AC  V  LKLGKEIHG  
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYV 525

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           +R        V +ALI+MYS C  L  A  +F   + + ++ WNS++S       +  + 
Sbjct: 526 LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNAL 585

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            L REM  S VE N VT+ S LP C+++A L+ GKE H +I+R  +   + +L NSL++M
Sbjct: 586 DLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFIL-NSLIDM 644

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y R G + +++ +FDLM +RD V++  +I+ YG+ G G  A+ LF++     +KP+H+T 
Sbjct: 645 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITF 704

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
             +LSACSHSGL+ EG K F+ M + Y + P +E +ACMVDL  RAG  N+  E I KMP
Sbjct: 705 TNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP 764

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           + P +A+W +LLGAC+IH N  + E+AA  L E  P++SG YVL+AN+Y+A G W+  AK
Sbjct: 765 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAK 824

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVK 696
           +R  M++ GV K PGC+W++       F+V DTS+   ++I   +  L   +K+ GYV  
Sbjct: 825 IRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPD 884

Query: 697 EEF 699
             F
Sbjct: 885 TNF 887



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/603 (26%), Positives = 274/603 (45%), Gaps = 88/603 (14%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           D  ++ +A I+  C K+  L  G Q+HA  +  G++    L  +L+  Y       +A  
Sbjct: 86  DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARR 145

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           + +  + R    W  ++ +Y   G Y E + ++  M +  +R D+F +P V KAC E+ +
Sbjct: 146 MFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKN 205

Query: 191 VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
              G+ V+   +    E +  V  +++ M+ K G++D+ARR F+++  +D   WN M+S 
Sbjct: 206 YRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSG 265

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK----------------- 292
           Y SKG +K+A +   +M+  GV+ + +TWN I  G  ++G F+                 
Sbjct: 266 YTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKP 325

Query: 293 -------------------GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                                L +  +M  +    +S+     + AC+++  L+ G+EIH
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385

Query: 334 GSAVRGCYGEYEN---VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           G  ++    E ++   V N+L+  Y++C+ +  A   F M  +  +++WN+ML+GY    
Sbjct: 386 GYCIK--VEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 391 CAEESAFLFREMFRSGVE-----------------------------------PNYVTIA 415
             EE+  L  EM   G+E                                   PN  TI+
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTIS 503

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLL----WNSLVEMYARSGKVPEAKSVFD 471
             L  C +V NL+ GKE H Y+LR      H+ L     ++L+ MY+    +  A SVF 
Sbjct: 504 GALAACGQVRNLKLGKEIHGYVLR-----NHIELSTGVGSALISMYSGCDSLEVACSVFS 558

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +S RD V + S+I+     G    AL L  EMN + ++ + VTMV+ L ACS    + +
Sbjct: 559 ELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQ 618

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G K+  +     G+         ++D+YGR G + K++ I   MP     + W  ++   
Sbjct: 619 G-KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS-WNVMISVY 676

Query: 592 QIH 594
            +H
Sbjct: 677 GMH 679



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 124/259 (47%), Gaps = 3/259 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   G+   A E F R+   +   D    + +  +  CG+V+ L  GK++H   +   +E
Sbjct: 474 FTQYGDGKAALEFFQRMH--SMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIE 531

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L++ Y+       AC +    + R  + WN +IS   + G    AL + ++M
Sbjct: 532 LSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREM 591

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQV 225
               +  +  T  S L AC ++  +  G+ +H  I  C  +   F+ N+L+ MYG+ G +
Sbjct: 592 NLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSI 651

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             +RR+FD M +RD VSWN MIS Y   G   +A  LF + +  G++ N IT+  +   C
Sbjct: 652 QKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSAC 711

Query: 286 LRTGNFKGVLELLSRMRTQ 304
             +G  +   +    M+T+
Sbjct: 712 SHSGLIEEGWKYFKMMKTE 730



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 148/321 (46%), Gaps = 8/321 (2%)

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           IT  +  G   R G       LLS M     +  ++  A++  L  C  +  L+LG ++H
Sbjct: 55  ITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASI--LQKCRKLYNLRLGFQVH 112

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              V       E + + L+ +Y +   +  A  +F   +E+++ +W +++  Y  L   E
Sbjct: 113 AQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYE 172

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LF  M   GV P++     +   C+ + N + GK+ + Y+L    F  +  +  S+
Sbjct: 173 ETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIG-FEGNSCVKGSI 231

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++M+ + G++  A+  F+ +  +D   +  +++GY  +GE + ALK   +M  + +KPD 
Sbjct: 232 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ 291

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VT  A++S  + SG   E  K F  M  +    P +  +  ++    + G   +A  +  
Sbjct: 292 VTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFR 351

Query: 574 KM---PYTPTSAMWATLLGAC 591
           KM      P S   A+ + AC
Sbjct: 352 KMVLEGVKPNSITIASAVSAC 372


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/651 (35%), Positives = 362/651 (55%), Gaps = 16/651 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  CG++ +   G  +HA   A G E N  +   LV+ Y     + NA  + +  
Sbjct: 128 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 187

Query: 136 NIRYP---LPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDV 191
             R     + WN +++ Y++ G    A+ ++++M +   IR D  +  +VL AC  +   
Sbjct: 188 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAW 247

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ VH   + +     +FV NA+V MY K G ++ A ++F++M  +D VSWN M++ Y
Sbjct: 248 SRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 307

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           +  G + +A  LF +++EE +E+NV+TW+ +  G  + G     L++  +MR   +  + 
Sbjct: 308 SQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNV 367

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-------VRNALITMYSRCKDLRH 363
           V  V  L  C+  G L  GKE H  A++      EN       V NALI MYS+CK  + 
Sbjct: 368 VTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA 427

Query: 364 AYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG--VEPNYVTIASILP 419
           A  +F +    ++S++TW  ++ G      A E+  LF +M +    V PN  TI+  L 
Sbjct: 428 ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALM 487

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
            CAR+  L+ G++ H Y+LR    +  L + N L++MY++SG V  A+ VFD M +R+ V
Sbjct: 488 ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGV 547

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           ++TSL+ GYG+ G G  AL++F EM K  + PD VT V VL ACSHSG+V +G   F  M
Sbjct: 548 SWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGM 607

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGI 599
              +G+ P  EH+ACMVDL  RAG L++A E+I  MP  PT A+W  LL AC+++ N  +
Sbjct: 608 NKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVEL 667

Query: 600 GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659
           GE+AA +LLE    N G Y L++N+YA   CW  +A++R  M++ G++K PGC+WV    
Sbjct: 668 GEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRK 727

Query: 660 VFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEIG 710
             + F   D S+  +Q+IY LL  L + +K  GYV    F   +   EE G
Sbjct: 728 GTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKG 778



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 167/583 (28%), Positives = 277/583 (47%), Gaps = 104/583 (17%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE--NSNIRYPLPW 143
           + K+LA  + +H   +  GL  +P     +++ Y +F+    A  ++   + +      W
Sbjct: 38  QCKSLASAELIHQQLLVQGLPHDPT---HIISMYLTFNSPAKALSVLRRLHPSSHTVFWW 94

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N LI   V  GF  + L +Y++MQ    R D++T+P VLKACGE+     G  VH+ + A
Sbjct: 95  NQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFA 154

Query: 204 C-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEA 259
              EW++FV N LVSMYG+ G  + AR++FD+M ER   D VSWN++++AY   G    A
Sbjct: 155 SGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRA 214

Query: 260 FQLFVEMQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
            ++F  M E+ G+                                     D+V+ V  L 
Sbjct: 215 MKMFERMTEDLGIRP-----------------------------------DAVSLVNVLP 239

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ VGA   GK++HG A+R    E   V NA++ MY++C  +  A  +F+    K +++
Sbjct: 240 ACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS 299

Query: 379 WNSMLSGYTHLDCAEESAFL-----------------------------------FREMF 403
           WN+M++GY+ +   +++  L                                   FR+M 
Sbjct: 300 WNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF------NEHLLLWNSLVEMY 457
             G EPN VT+ S+L  CA    L HGKE HC+ ++  +        + L++ N+L++MY
Sbjct: 360 LCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMY 419

Query: 458 ARSGKVPEAKSVFDLMSRRDE--VTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDH 513
           ++      A+++FDL+  +D   VT+T LI G    GE   AL+LF +M    N + P+ 
Sbjct: 420 SKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNA 479

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-----CMVDLYGRAGLLNKA 568
            T+   L AC+  G +     +F R    Y +  + E        C++D+Y ++G ++ A
Sbjct: 480 FTISCALMACARLGAL-----RFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAA 534

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + +   M +      W +L+    +H   G GE A +   E +
Sbjct: 535 RVVFDNM-HQRNGVSWTSLMTGYGMH---GRGEEALQIFYEMQ 573


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/610 (36%), Positives = 344/610 (56%), Gaps = 7/610 (1%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYA--SFSLYNNACFLVENSNIRYPLPWNL 145
           K+    KQ+H+  I  GL      + KL+ F A   F   + A  L E+        WN 
Sbjct: 43  KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNT 102

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           +I           A+  Y +M    +  +++T+P +LK+C ++     G+ +H   +   
Sbjct: 103 MIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLG 162

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            E   FVH +L++MY + G++  A  +F K   RDAVS+  +I+ Y  +G   +A +LF 
Sbjct: 163 LESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFE 222

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           E+       + ++WN +  G  ++G F+  L     M+      +    V  L AC+  G
Sbjct: 223 EIPVR----DAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSG 278

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           +L+LG  +         G    + NALI MYS+C DL  A  LF+   EK II+WN M+ 
Sbjct: 279 SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIG 338

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY+H++  +E+  LFR+M +S VEPN VT  SILP CA +  L  GK  H YI ++ +  
Sbjct: 339 GYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGL 398

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            +  LW SL++MYA+ G +  AK VF  M  +   ++ ++I+G  + G   +AL+LF +M
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
                +PD +T V VLSACSH+GLV  G++ F  M   Y I P+L+H+ CM+DL GRAGL
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGL 518

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
            ++A+ ++  M   P  A+W +LLGAC++H N  +GE+AA+ L E  PEN G YVL++N+
Sbjct: 519 FDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNI 578

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA  G WD +A++RT + D G++K+PGC+ ++  +V   FLV D  + Q+Q+IY +L  +
Sbjct: 579 YATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEI 638

Query: 685 TELMKDAGYV 694
            +L++ AG+V
Sbjct: 639 DQLLEKAGHV 648



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 221/480 (46%), Gaps = 71/480 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA--------------- 120
           +F  ++  C KV A  +GKQ+H   + LGLE +P +   L+  YA               
Sbjct: 134 TFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKS 193

Query: 121 ------SFSL----------YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
                 SF+            ++A  L E   +R  + WN +I+ Y + G + EAL  ++
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           +M+   +  +  T  +VL AC +   ++ G  V S I D     +L + NAL+ MY K G
Sbjct: 254 EMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCG 313

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +D AR LF+ + E+D +SWN MI  Y+    +KEA  LF +MQ+  VE N +T+ +I  
Sbjct: 314 DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSI-- 371

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG- 342
                                            L AC+++GAL LGK IH    +   G 
Sbjct: 372 ---------------------------------LPACAYLGALDLGKWIHAYIDKKFLGL 398

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
              ++  +LI MY++C ++  A  +F     KS+ +WN+M+SG      A  +  LFR+M
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              G EP+ +T   +L  C+    ++ G++    ++     +  L  +  ++++  R+G 
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGL 518

Query: 463 VPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             EA+++   M  + D   + SL+    +   G V L  F   +  +++P++     +LS
Sbjct: 519 FDEAEALMKNMEMKPDGAIWGSLLGACRVH--GNVELGEFAAKHLFELEPENPGAYVLLS 576



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 162/389 (41%), Gaps = 55/389 (14%)

Query: 47  FAGRGNLSKAFEAFTRI-RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           +A  G   +A   F  + R   A ++    +   ++  C +  +L  G  + +     GL
Sbjct: 239 YAQSGRFEEALAFFQEMKRANVAPNE---STMVTVLSACAQSGSLELGNWVRSWIEDHGL 295

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             N  LV  L+  Y+     + A  L E    +  + WN++I  Y     Y EAL ++++
Sbjct: 296 GSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRK 355

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID----ACHEWSLFVHNALVSMYGK 221
           MQ   +  ++ T+ S+L AC  +  +D G+ +H+ ID         SL+   +L+ MY K
Sbjct: 356 MQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWT--SLIDMYAK 413

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A+++F  M  +   SWN MIS  A  G    A +LF +M++EG E + IT    
Sbjct: 414 CGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDIT---- 469

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                    F GVL                       ACSH G ++LG++   S V   Y
Sbjct: 470 ---------FVGVLS----------------------ACSHAGLVELGRQCFSSMVED-Y 497

Query: 342 GEYENVRN--ALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLDCAEESAFL 398
                +++   +I +  R      A  L K M  +     W S+L         E   F 
Sbjct: 498 DISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFA 557

Query: 399 FREMFRSGVEPN----YVTIASILPLCAR 423
            + +F   +EP     YV +++I     R
Sbjct: 558 AKHLFE--LEPENPGAYVLLSNIYATAGR 584


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/658 (35%), Positives = 365/658 (55%), Gaps = 28/658 (4%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN- 134
           +F  ++  CG++ +L  G  +HA   A GL  N  +   +V  Y      ++A  + +  
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 135 --SNIRYPLPWNLLISLYVRDGFYAEALCVYKQM---QSRRIRGDNFTYPSVLKACGEMM 189
               I   + WN +++ YV+ G    AL +  +M    S ++R D  T  ++L AC  + 
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVF 248

Query: 190 DVDFGRVVHS------CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
            +  G+ VH        +D      +FV NALVSMY K  +++ A ++F+ + ++D VSW
Sbjct: 249 ALQHGKQVHGFSVRNGLVD-----DVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSW 303

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           N M++ Y+  G +  A  LF  MQEE ++++VITW+ +  G  + G+    L++  +M+ 
Sbjct: 304 NAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQL 363

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC----YGEYEN---VRNALITMYS 356
                + V     L  C+ VGAL  GK+ H   ++      + + E+   V N LI MY+
Sbjct: 364 YGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYA 423

Query: 357 RCKDLRHAYILFKMT--AEKSIITWNSMLSGYTHLDCAEESAFLFREMFR--SGVEPNYV 412
           +CK  R A  +F      +K+++TW  M+ GY     A ++  LF ++F+  + ++PN  
Sbjct: 424 KCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAF 483

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T++  L  CAR+  L+ G++ H Y LR    +E L + N L++MY++SG +  A++VFD 
Sbjct: 484 TLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDN 543

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  R+ V++TSL+ GYG+ G G  AL LF++M K     D +T + VL ACSHSG+V +G
Sbjct: 544 MKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQG 603

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
              F  M   +GI P  EH+ACMVDL GRAG LN+A E+I  M   PT+ +W  LL A +
Sbjct: 604 MIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASR 663

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           IH N  +GE+AA KL E   EN G Y L++N+YA    W  +A++R+ M+  G+RK PGC
Sbjct: 664 IHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGC 723

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEIG 710
           +W+      + F V D S+ ++++IY LL  L + +KD GYV +  F   +   EE G
Sbjct: 724 SWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKG 781



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/515 (30%), Positives = 254/515 (49%), Gaps = 95/515 (18%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN LI   V+ G   + L  Y QMQ      D++T+P VLKACGE+  +  G  VH+ + 
Sbjct: 95  WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVC 154

Query: 203 ACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKE 258
           A    S +F+ N++V+MYG+ G +D A ++FD++LER   D VSWN++++AY   G  + 
Sbjct: 155 ANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRT 214

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A ++                        R GN   +     ++R      D++  V  L 
Sbjct: 215 ALRI----------------------AFRMGNHYSL-----KLRP-----DAITLVNILP 242

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ V AL+ GK++HG +VR    +   V NAL++MY++C  +  A  +F+   +K +++
Sbjct: 243 ACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVS 302

Query: 379 WNSMLSGYTH--------------------LDCAEESAFL---------------FREMF 403
           WN+M++GY+                     LD    SA +               FR+M 
Sbjct: 303 WNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQ 362

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF------NEHLLLWNSLVEMY 457
             G+EPN VT+AS+L  CA V  L +GK+ H Y+++  +        + LL+ N L++MY
Sbjct: 363 LYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMY 422

Query: 458 ARSGKVPEAKSVFDLMSRRDE--VTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDH 513
           A+      A+S+FD +  +D+  VT+T +I GY   GE   ALKLF ++   K  +KP+ 
Sbjct: 423 AKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNA 482

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-----CMVDLYGRAGLLNKA 568
            T+   L AC+       G+ +  R    Y +  + E        C++D+Y ++G ++ A
Sbjct: 483 FTLSCALMACARL-----GELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAA 537

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           + +   M      + W +L+    +H   G GE A
Sbjct: 538 RAVFDNMKLRNVVS-WTSLMTGYGMH---GRGEEA 568



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 154/333 (46%), Gaps = 16/333 (4%)

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           + AY   G   EA  L   +        V  WN +    ++ G     L    +M+    
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPS--HSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGW 123

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
             D       L AC  + +L+ G  +H        G    + N+++ MY RC  L  A+ 
Sbjct: 124 LPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQ 183

Query: 367 LFKMTAEK---SIITWNSMLSGYTHLDCAEESAFLFREMFRSG------VEPNYVTIASI 417
           +F    E+    I++WNS+L+ Y       +S    R  FR G      + P+ +T+ +I
Sbjct: 184 MFDEVLERKIEDIVSWNSILAAYVQ---GGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 240

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP CA V  LQHGK+ H + +R  + ++ + + N+LV MYA+  K+ EA  VF+ + ++D
Sbjct: 241 LPACASVFALQHGKQVHGFSVRNGLVDD-VFVGNALVSMYAKCSKMNEANKVFEGIKKKD 299

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V++ +++ GY   G    AL LF+ M +  IK D +T  AV++  +  G   E    F 
Sbjct: 300 VVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFR 359

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           +M  +YG+ P +   A ++      G L   K+
Sbjct: 360 QM-QLYGLEPNVVTLASLLSGCASVGALLYGKQ 391


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/651 (35%), Positives = 361/651 (55%), Gaps = 16/651 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  CG++ +   G  +HA   A G E N  +   LV+ Y     + NA  + +  
Sbjct: 147 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 206

Query: 136 NIRYP---LPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDV 191
             R     + WN +++ Y++ G    A+ ++++M +   IR D  +  +VL AC  +   
Sbjct: 207 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAW 266

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ VH   + +     +FV NA+V MY K G ++ A ++F++M  +D VSWN M++ Y
Sbjct: 267 SRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 326

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           +  G + +A  LF +++EE +E+NV+TW+ +  G  + G     L++  +M    +  + 
Sbjct: 327 SQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNV 386

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-------VRNALITMYSRCKDLRH 363
           V  V  L  C+  G L  GKE H  A++      EN       V NALI MYS+CK  + 
Sbjct: 387 VTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA 446

Query: 364 AYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG--VEPNYVTIASILP 419
           A  +F +    ++S++TW  ++ G      A E+  LF +M +    V PN  TI+  L 
Sbjct: 447 ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALM 506

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
            CAR+  L+ G++ H Y+LR    +  L + N L++MY++SG V  A+ VFD M +R+ V
Sbjct: 507 ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGV 566

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           ++TSL+ GYG+ G G  AL++F EM K  + PD VT V VL ACSHSG+V +G   F  M
Sbjct: 567 SWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGM 626

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGI 599
              +G+ P  EH+ACMVDL  RAG L++A E+I  MP  PT A+W  LL AC+++ N  +
Sbjct: 627 NKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVEL 686

Query: 600 GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659
           GE+AA +LLE    N G Y L++N+YA   CW  +A++R  M++ G++K PGC+WV    
Sbjct: 687 GEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRK 746

Query: 660 VFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEIG 710
             + F   D S+  +Q+IY LL  L + +K  GYV    F   +   EE G
Sbjct: 747 GTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKG 797



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 167/583 (28%), Positives = 276/583 (47%), Gaps = 104/583 (17%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE--NSNIRYPLPW 143
           + K+LA  +  H   +  GL  +P     +++ Y +F+    A  ++   + +      W
Sbjct: 57  QCKSLASAELTHQQLLVQGLPHDPT---HIISMYLTFNSPAKALSVLRRLHPSSHTVFWW 113

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N LI   V  GF  + L +Y++MQ    R D++T+P VLKACGE+     G  VH+ + A
Sbjct: 114 NQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFA 173

Query: 204 C-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEA 259
              EW++FV N LVSMYG+ G  + AR++FD+M ER   D VSWN++++AY   G    A
Sbjct: 174 SGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRA 233

Query: 260 FQLFVEMQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
            ++F  M E+ G+                                     D+V+ V  L 
Sbjct: 234 MKMFERMTEDLGIRP-----------------------------------DAVSLVNVLP 258

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ VGA   GK++HG A+R    E   V NA++ MY++C  +  A  +F+    K +++
Sbjct: 259 ACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS 318

Query: 379 WNSMLSGYTHLDCAEESAFL-----------------------------------FREMF 403
           WN+M++GY+ +   +++  L                                   FR+M 
Sbjct: 319 WNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQML 378

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF------NEHLLLWNSLVEMY 457
             G EPN VT+ S+L  CA    L HGKE HC+ ++  +        + L++ N+L++MY
Sbjct: 379 LCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMY 438

Query: 458 ARSGKVPEAKSVFDLMSRRDE--VTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDH 513
           ++      A+++FDL+  +D   VT+T LI G    GE   AL+LF +M    N + P+ 
Sbjct: 439 SKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNA 498

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-----CMVDLYGRAGLLNKA 568
            T+   L AC+  G +     +F R    Y +  + E        C++D+Y ++G ++ A
Sbjct: 499 FTISCALMACARLGAL-----RFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAA 553

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + +   M +      W +L+    +H   G GE A +   E +
Sbjct: 554 RVVFDNM-HQRNGVSWTSLMTGYGMH---GRGEEALQIFYEMQ 592


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/581 (37%), Positives = 338/581 (58%), Gaps = 8/581 (1%)

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNAC-FLVENSNIRYPLP----WNLLISLYVRDGFYAE 158
           G++ + V    +++ YA    +  A  + +E   ++   P    W  LI+   ++G+  E
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH-EWSLFVHNALV 216
           AL V+++M    ++ ++ T  S + AC  +  +  GR +H  CI     +  L V N+LV
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV 405

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
             Y K   V+VARR F  + + D VSWN M++ YA +G  +EA +L  EM+ +G+E ++I
Sbjct: 406 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDII 465

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           TWN +  G  + G+ K  LE   RM +     ++      L AC  V  LKLGKEIHG  
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYV 525

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           +R        V +ALI+MYS C  L  A  +F   + + ++ WNS++S       +  + 
Sbjct: 526 LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNAL 585

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            L REM  S VE N VT+ S LP C+++A L+ GKE H +I+R  +   + +L NSL++M
Sbjct: 586 DLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFIL-NSLIDM 644

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y R G + +++ +FDLM +RD V++  +I+ YG+ G G  A+ LF+      +KP+H+T 
Sbjct: 645 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITF 704

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
             +LSACSHSGL+ EG K F+ M + Y + P +E +ACMVDL  RAG  N+  E I KMP
Sbjct: 705 TNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP 764

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           + P +A+W +LLGAC+IH N  + E+AA  L E  P++SG YVL+AN+Y+A G W+  AK
Sbjct: 765 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAK 824

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           +R  M++ GV K PGC+W++       F+V DTS+   ++I
Sbjct: 825 IRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQI 865



 Score =  218 bits (556), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 157/603 (26%), Positives = 274/603 (45%), Gaps = 88/603 (14%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           D  ++ +A I+  C K+  L  G Q+HA  +  G++    L  +L+  Y       +A  
Sbjct: 86  DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARR 145

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           + +  + R    W  ++ +Y   G Y E + ++  M +  +R D+F +P V KAC E+ +
Sbjct: 146 MFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKN 205

Query: 191 VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
              G+ V+   +    E +  V  +++ M+ K G++D+ARR F+++  +D   WN M+S 
Sbjct: 206 YRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSG 265

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK----------------- 292
           Y SKG +K+A +   +M+  GV+ + +TWN I  G  ++G F+                 
Sbjct: 266 YTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKP 325

Query: 293 -------------------GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                                L +  +M  +    +S+     + AC+++  L+ G+EIH
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385

Query: 334 GSAVRGCYGEYEN---VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           G  ++    E ++   V N+L+  Y++C+ +  A   F M  +  +++WN+ML+GY    
Sbjct: 386 GYCIK--VEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 391 CAEESAFLFREMFRSGVE-----------------------------------PNYVTIA 415
             EE+  L  EM   G+E                                   PN  TI+
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTIS 503

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLL----WNSLVEMYARSGKVPEAKSVFD 471
             L  C +V NL+ GKE H Y+LR      H+ L     ++L+ MY+    +  A SVF 
Sbjct: 504 GALAACGQVRNLKLGKEIHGYVLR-----NHIELSTGVGSALISMYSGCDSLEVACSVFS 558

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +S RD V + S+I+     G    AL L  EMN + ++ + VTMV+ L ACS    + +
Sbjct: 559 ELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQ 618

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G K+  +     G+         ++D+YGR G + K++ I   MP     + W  ++   
Sbjct: 619 G-KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS-WNVMISVY 676

Query: 592 QIH 594
            +H
Sbjct: 677 GMH 679



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 3/259 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   G+   A E F R+   +   D    + +  +  CG+V+ L  GK++H   +   +E
Sbjct: 474 FTQYGDGKAALEFFQRMH--SMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIE 531

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L++ Y+       AC +    + R  + WN +IS   + G    AL + ++M
Sbjct: 532 LSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREM 591

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQV 225
               +  +  T  S L AC ++  +  G+ +H  I  C  +   F+ N+L+ MYG+ G +
Sbjct: 592 NLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSI 651

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             +RR+FD M +RD VSWN MIS Y   G   +A  LF   +  G++ N IT+  +   C
Sbjct: 652 QKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSAC 711

Query: 286 LRTGNFKGVLELLSRMRTQ 304
             +G  +   +    M+T+
Sbjct: 712 SHSGLIEEGWKYFKMMKTE 730



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 148/321 (46%), Gaps = 8/321 (2%)

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           IT  +  G   R G       LLS M     +  ++  A++  L  C  +  L+LG ++H
Sbjct: 55  ITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASI--LQKCRKLYNLRLGFQVH 112

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              V       E + + L+ +Y +   +  A  +F   +E+++ +W +++  Y  L   E
Sbjct: 113 AQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYE 172

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LF  M   GV P++     +   C+ + N + GK+ + Y+L    F  +  +  S+
Sbjct: 173 ETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIG-FEGNSCVKGSI 231

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++M+ + G++  A+  F+ +  +D   +  +++GY  +GE + ALK   +M  + +KPD 
Sbjct: 232 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ 291

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VT  A++S  + SG   E  K F  M  +    P +  +  ++    + G   +A  +  
Sbjct: 292 VTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFR 351

Query: 574 KM---PYTPTSAMWATLLGAC 591
           KM      P S   A+ + AC
Sbjct: 352 KMVLEGVKPNSITIASAVSAC 372


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/717 (33%), Positives = 380/717 (52%), Gaps = 17/717 (2%)

Query: 5   SSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIR 64
           +S LI   +S+  L   +    + P ++  +   N L  ++ +   G  +K   +F  + 
Sbjct: 62  TSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSL--IRSYGNNGRANKCLSSFCLMH 119

Query: 65  ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL 124
             + + D    +F  +   CG++ ++  G   HA +   G   N  +   LV  Y+    
Sbjct: 120 SLSWTPDNY--TFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGS 177

Query: 125 YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLK 183
            ++A  + +   +   + WN +I  Y + G    AL ++ +M +    R D+ T  +VL 
Sbjct: 178 LSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLP 237

Query: 184 ACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS 242
            C  +     G+  H   + +    ++FV N LV MY KFG +D A  +F  M  +D VS
Sbjct: 238 PCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVS 297

Query: 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           WN M++ Y+  G +++A +LF +MQEE ++++V+TW+    G  + G     L +  +M 
Sbjct: 298 WNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQML 357

Query: 303 TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-------GCYGEYENVRNALITMY 355
           +     + V  +  L  C+ VGAL  GKEIH  A++         +G+   V N LI MY
Sbjct: 358 SSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMY 417

Query: 356 SRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE--PNY 411
           ++CK +  A  +F   +  E+ ++TW  M+ GY+    A ++  L  EMF    +  PN 
Sbjct: 418 AKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNA 477

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            TI+  L  CA +A L  GK+ H Y LR       L + N L++MYA+ G + +A+ VFD
Sbjct: 478 FTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFD 537

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            M  ++EVT+TSL+ GYG+ G G  AL +FEEM +   K D VT++ VL ACSHSG++ +
Sbjct: 538 NMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQ 597

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G + F RM + +G+ P  EH+AC+VDL GRAG LN A  +I +MP  P   +W  LL  C
Sbjct: 598 GMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCC 657

Query: 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
           +IH    +GE+AA+K+ E    N G Y L++NMYA  G W  + ++R+ MR  G++K PG
Sbjct: 658 RIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPG 717

Query: 652 CAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           C+WV+     + F V D ++  A+EIY +L    + +KD GYV +  F   +   EE
Sbjct: 718 CSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEE 774


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/641 (35%), Positives = 352/641 (54%), Gaps = 48/641 (7%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112
           K F     I     S+  +L SF   H++  C   KAL QGKQLH   I  GL+ +P ++
Sbjct: 2   KVFLFKRAISSLPTSNPNLLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFML 61

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
            KLV  YA      +A  L +  +      W  ++  Y R+G   E +  Y +M+ + + 
Sbjct: 62  TKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVL 121

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRL 231
            D + +P V +ACG+++ ++ G  VH  +  C  E+ L V N+L+ MY K G V   RR+
Sbjct: 122 PDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRV 181

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI---------- 281
           FD+M+ERD +SWN+MIS Y   G  + + +L   M+  G E +++TWNT+          
Sbjct: 182 FDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLC 241

Query: 282 ---------------------AGGCLRTGNFKGVL----ELLSRMRTQETYLDSVATVIG 316
                                  G  R GN +  L    E++SR R     LDS+++V  
Sbjct: 242 DEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSR-RVAFPDLDSLSSV-- 298

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGE--YENVRNALITMYSRCKDLRHAYILFKMTAEK 374
           L +C H+GAL  G+EIHG  +R       Y++   AL+TMY +CK ++ A  +F++    
Sbjct: 299 LVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRF 358

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            ++TWN+M+ G+  L+    +   F +M RSG+  N +TI+++LP C    +L+ GK+ H
Sbjct: 359 DVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPAC----DLKSGKQVH 414

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            YI + + F+  + +WN+L+ MY++ G +  A S+F  M  RD V++ ++I G+G+ G G
Sbjct: 415 AYITKNS-FSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLG 473

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           + AL+L  +M+ + + P+ VT  + LSACSHSGLV EG + F  MT  +G  P +EHF+C
Sbjct: 474 QFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSC 533

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           +VDL  RA  L  A   I KMP  P+  +W+ LL AC+  +N  + + AAE+L +  PE+
Sbjct: 534 VVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNVSVAKLAAEQLFQLEPEH 593

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           +G YV ++N+YA  G WD    VR  M D G+ K  G +W+
Sbjct: 594 AGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSGYSWI 634


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/718 (33%), Positives = 383/718 (53%), Gaps = 19/718 (2%)

Query: 5   SSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIR 64
           +S LI   +SV  L   +    + P ++  +   N L  ++ +   G  +K    F  + 
Sbjct: 62  TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSL--IRSYGDNGCANKCLYLFGLMH 119

Query: 65  ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL 124
             + + D    +F  +   CG++ ++  G+  HA ++  G   N  +   LV  Y+    
Sbjct: 120 SLSWTPDNY--TFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRS 177

Query: 125 YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLK 183
            ++A  + +  ++   + WN +I  Y + G    AL ++ +M +    R DN T  +VL 
Sbjct: 178 LSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLP 237

Query: 184 ACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
            C  +     G+ +H C     E   ++FV N LV MY K G +D A  +F  M  +D V
Sbjct: 238 PCASLGTHSLGKQLH-CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SWN M++ Y+  G +++A +LF +MQEE ++++V+TW+    G  + G     L +  +M
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-------GCYGEYENVRNALITM 354
            +     + V  +  L  C+ VGAL  GKEIH  A++         +G+   V N LI M
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDM 416

Query: 355 YSRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE--PN 410
           Y++CK +  A  +F   +  E+ ++TW  M+ GY+    A ++  L  EMF    +  PN
Sbjct: 417 YAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             TI+  L  CA +A L+ GK+ H Y LR       L + N L++MYA+ G + +A+ VF
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           D M  ++EVT+TSL+ GYG+ G G  AL +F+EM +   K D VT++ VL ACSHSG++ 
Sbjct: 537 DNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +G + F RM +++G+ P  EH+AC+VDL GRAG LN A  +I +MP  P   +W   L  
Sbjct: 597 QGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           C+IH    +GE+AAEK+ E    + G Y L++N+YA  G W  + ++R+ MR  GV+K P
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP 716

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           GC+WV+     + F V D ++  A+EIY +L    + +KD GYV +  F   +   EE
Sbjct: 717 GCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEE 774


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/613 (35%), Positives = 340/613 (55%), Gaps = 11/613 (1%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNL 145
           K L   KQ+H+  I  GL      + KL+ F A     + +  L     IR P  + WN 
Sbjct: 39  KTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNH 98

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           +I           AL  Y  M S     + +T+PS+ K+C ++     G+ VH+  +   
Sbjct: 99  MIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLG 158

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            E + FVH +L++MY + G++  AR +FDK   RDAVS+  +I+ YASKG   EA +LF 
Sbjct: 159 LEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFD 218

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           E+       +V++WN +  G  ++G  +  +     MR  +   +    +  L AC+  G
Sbjct: 219 EIPVR----DVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSG 274

Query: 325 A-LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           + L+LG  +         G    + N LI MY +C DL  A  LF+   +K++++WN M+
Sbjct: 275 SSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMI 334

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR--RA 441
            GYTH+ C +E+  LFR M +S ++PN VT  SILP CA +  L  GK  H Y+ +  ++
Sbjct: 335 GGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKS 394

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           M N  + LW SL++MYA+ G +  AK +FD M+ +   T+ ++I+G+ + G    AL LF
Sbjct: 395 MKNT-VALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLF 453

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M      PD +T V VL+AC H+GL+  G++ F  M   Y + P+L H+ CM+DL+GR
Sbjct: 454 SRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGR 513

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AGL ++A+ ++  M   P  A+W +LLGAC+IHR   + E  A+ L E  PEN   YVL+
Sbjct: 514 AGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLL 573

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+YA  G W+ +AK+RT + D  ++K+PGC+ ++  +V   FLV D  + Q+ EIY +L
Sbjct: 574 SNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKML 633

Query: 682 GGLTELMKDAGYV 694
             +   ++ AG+V
Sbjct: 634 DEIDMRLEKAGFV 646



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 212/484 (43%), Gaps = 77/484 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKN--------------------------- 108
           +F  I   C K++   +GKQ+HA  + LGLE N                           
Sbjct: 130 TFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKS 189

Query: 109 ----PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
                V    L+T YAS    + A  L +   +R  + WN +IS Y + G   EA+  ++
Sbjct: 190 SMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFE 249

Query: 165 QMQSRRIRGDNFTYPSVLKACGEM-MDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
           +M+  ++  +  T  SVL AC +    +  G  V S I D     ++ + N L+ MY K 
Sbjct: 250 EMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKC 309

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G ++ A  LF+K+ +++ VSWN MI  Y     +KEA  LF  M +  ++ N +T+ +I 
Sbjct: 310 GDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSI- 368

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L AC+++GAL LGK +H    +    
Sbjct: 369 ----------------------------------LPACANLGALDLGKWVHAYVDKNMKS 394

Query: 343 EYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
               V    +LI MY++C DL  A  +F     KS+ TWN+M+SG+      + +  LF 
Sbjct: 395 MKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFS 454

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M   G  P+ +T   +L  C     L  G+ +   +++    +  L  +  +++++ R+
Sbjct: 455 RMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRA 514

Query: 461 GKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN--QIKPDHVTMV 517
           G   EA+++   M  + D   + SL+    I       ++L E + K+  +++P++ +  
Sbjct: 515 GLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRR----IELAESVAKHLFELEPENPSAY 570

Query: 518 AVLS 521
            +LS
Sbjct: 571 VLLS 574



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 6/247 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKV-KALAQGKQLHACAIALGL 105
           +A  G + +A   F  +R    + +V   +   ++  C +   +L  G  + +     GL
Sbjct: 235 YAQSGRVEEAMAFFEEMRRAKVTPNV--STMLSVLSACAQSGSSLQLGNWVRSWIEDRGL 292

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             N  LV  L+  Y        A  L E    +  + WN++I  Y     Y EAL ++++
Sbjct: 293 GSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRR 352

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID---ACHEWSLFVHNALVSMYGKF 222
           M    I  ++ T+ S+L AC  +  +D G+ VH+ +D      + ++ +  +L+ MY K 
Sbjct: 353 MMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKC 412

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G + VA+R+FD M  +   +WN MIS +A  G    A  LF  M  EG   + IT+  + 
Sbjct: 413 GDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVL 472

Query: 283 GGCLRTG 289
             C   G
Sbjct: 473 TACKHAG 479


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 328/559 (58%), Gaps = 7/559 (1%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGRV 196
           R  + WN LIS YV  G   EA+  Y  M    +   N  T+ ++L        VD GR 
Sbjct: 100 RDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQ 159

Query: 197 VHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H  I      + +FV ++LV MY K G V VA ++FD++ ER+ V +NTMI+     G+
Sbjct: 160 IHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGM 219

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
            K++ +LF  M+E     + I+W T+  G ++ G     ++L   MR +   +D      
Sbjct: 220 VKDSKRLFHGMKER----DSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGS 275

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L AC  + ALK GKEIH   +R  Y     V +AL+ MY +C+ +R+A  +FK  A K+
Sbjct: 276 VLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKN 335

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W +ML GY     +EE+  +F +M R+G+EP+  T+ S++  CA +A+L+ G +FHC
Sbjct: 336 VVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHC 395

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
             L   + +  + + N+L+ +Y + G + ++  +FD MS RDEV++T+L++GY   G+  
Sbjct: 396 QALVSGLIS-FITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKAN 454

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
             + LFE M    +KPD VT +AVLSACS +GLV  GQ+ FE M   +GI P  +H+ CM
Sbjct: 455 ETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCM 514

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           +DL+GRAG L +AK  I KMP++P S  WATLL +C+++ N  IG+WAAE LLE  P+N 
Sbjct: 515 IDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNP 574

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
             Y+L++++YAA G W  +A++R  MR+ G RK PG +W+   +    F  DD S+  + 
Sbjct: 575 AGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSD 634

Query: 676 EIYPLLGGLTELMKDAGYV 694
           +IY  L  L   M + GYV
Sbjct: 635 QIYAELEKLNHKMIEEGYV 653



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 207/418 (49%), Gaps = 38/418 (9%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F++N L++ Y K G +  AR +FDKM + ++ SWNTM+SAY+  G      ++F  M   
Sbjct: 41  FLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNR 100

Query: 270 GVEVNVITWNTIAGGCLRTGN-FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
               + ++WN++  G +  G+  + V    S M+     L+ +     L   S  G + L
Sbjct: 101 ----DGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDL 156

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYS-------------------------------R 357
           G++IHG  V+  +G Y  V ++L+ MY+                               R
Sbjct: 157 GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLR 216

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
              ++ +  LF    E+  I+W +M++G        E+  LFR+M + G+  +  T  S+
Sbjct: 217 SGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSV 276

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           L  C  +  L+ GKE H  I+R   +N ++ + ++LV+MY +   V  A++VF  M+ ++
Sbjct: 277 LTACGGLRALKEGKEIHTLIIRSG-YNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKN 335

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V++T+++ GYG  G    A+++F +M +N I+PD  T+ +V+S+C++   + EG  QF 
Sbjct: 336 VVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEG-AQFH 394

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
               + G+   +     ++ LYG+ G +  + ++  +M +    +  A + G  Q  +
Sbjct: 395 CQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGK 452



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 200/408 (49%), Gaps = 46/408 (11%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N V+   ++T      +  ++  L      R  + W  +I+  +++G  AEA+ +++ 
Sbjct: 201 ERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRD 260

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           M+   +  D +T+ SVL ACG +  +  G+ +H+  I + +  ++FV +ALV MY K   
Sbjct: 261 MRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRS 320

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           V  A  +F +M  ++ VSW  M+  Y   G  +EA ++F +MQ  G+E +  T  ++   
Sbjct: 321 VRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSV--- 377

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           + +C+++ +L+ G + H  A+      +
Sbjct: 378 --------------------------------ISSCANLASLEEGAQFHCQALVSGLISF 405

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V NALIT+Y +C  +  +  LF   + +  ++W +++SGY     A E+  LF  M  
Sbjct: 406 ITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLV 465

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR---AMFNEHLLLWNSLVEMYARSG 461
            G++P+ VT  ++L  C+R   ++ G+++   +L+      F++H   +  +++++ R+G
Sbjct: 466 QGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDH---YTCMIDLFGRAG 522

Query: 462 KVPEAKSVFDLMS-RRDEVTYTSLIAG---YGIQGEGRVALKLFEEMN 505
           ++ EAK+  + M    D + + +L++    YG +  G+ A +   E++
Sbjct: 523 RLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELD 570



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           ++A + F  +R    + D    +F  ++  CG ++AL +GK++H   I  G   N  +  
Sbjct: 252 AEAMDLFRDMRQEGMAMDQY--TFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGS 309

Query: 114 KLVTFYASFS--LYNNACF-LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
            LV  Y       Y  A F  + N N+   + W  ++  Y ++GF  EA+ V+  MQ   
Sbjct: 310 ALVDMYCKCRSVRYAEAVFKRMANKNV---VSWTAMLVGYGQNGFSEEAVRVFCDMQRNG 366

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF-VHNALVSMYGKFGQVDVAR 229
           I  D+FT  SV+ +C  +  ++ G   H         S   V NAL+++YGK G ++ + 
Sbjct: 367 IEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSN 426

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +LFD+M  RD VSW  ++S YA  G   E   LF  M  +G++ + +T+  +   C R G
Sbjct: 427 QLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAG 486



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 37/232 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C  + +L +G Q H  A+  GL     +   L+T Y       ++  L +  
Sbjct: 373 TLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEM 432

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  + W  L+S Y + G   E + ++++M  + ++ D  T+ +VL AC     V+ G+
Sbjct: 433 SFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQ 492

Query: 196 VVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
                +   H    F   +  ++ ++G+ G+++ A+   +KM    D++ W T++S+   
Sbjct: 493 QYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRL 552

Query: 250 -------------------------------YASKGLWKEAFQLFVEMQEEG 270
                                          YA+KG W    QL   M+E+G
Sbjct: 553 YGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKG 604



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 34/188 (18%)

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD-------- 471
           LC    N    K+ HC I++ ++ N    L+N+L+  Y++ G +  A+ VFD        
Sbjct: 14  LCCETRNQTQAKKLHCLIIK-SLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 472 -----------------------LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
                                  +M  RD V++ SLI+GY   G    A+K +  M K+ 
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 509 I-KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
           +   + +T   +L   S  G V  G +Q       +G    +   + +VD+Y + GL++ 
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLG-RQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191

Query: 568 AKEIITKM 575
           A ++  ++
Sbjct: 192 ASQVFDEV 199


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/692 (33%), Positives = 367/692 (53%), Gaps = 58/692 (8%)

Query: 57  FEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
           F  F  I + +  H+  L    H  F   +   L Q +QLH+  +     + P L  +L+
Sbjct: 13  FSRFQPIFLISHVHNDELIYSFHAFF--QRCFTLQQARQLHSQLVLTTAHRLPFLAARLI 70

Query: 117 TFYASFSLYNNACFLVEN---SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
             YA F+  ++A  + +     ++ + L WN +I   V  G++  AL +Y +M+      
Sbjct: 71  AVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLP 130

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS------LFVHNALVSMYGKFGQVDV 227
           D FT P V++AC  +      R+VH     CH         L V N LV MYGK G+++ 
Sbjct: 131 DGFTLPLVIRACSSLGSSYLCRIVH-----CHALQMGFRNHLHVVNELVGMYGKLGRMED 185

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR+LFD M  R  VSWNTM+S YA       A ++F  M+ EG++ N +TW ++     R
Sbjct: 186 ARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHAR 245

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
            G +   LEL   MRT+   + + A  + L  C+ +  +  GKEIHG  V+G Y +Y  V
Sbjct: 246 CGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFV 305

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT-------------HLDCA-- 392
           +NALI  Y + + +  A+ +F     K++++WN+++S Y              H++ +  
Sbjct: 306 KNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDS 365

Query: 393 --------------------------EESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
                                     E+S  LFR+M  + V  N VTI+S+L +CA +A 
Sbjct: 366 DDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAA 425

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L  G+E H Y +R  M ++++L+ N L+ MY + G   E   VFD +  RD +++ SLI 
Sbjct: 426 LNLGRELHGYAIRN-MMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIG 484

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           GYG+ G G  AL+ F EM + ++KPD++T VA+LSACSH+GLV  G+  F++M + + I 
Sbjct: 485 GYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIE 544

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606
           P +EH+ACMVDL GRAGLL +A +I+  MP  P   +W  LL +C+++++  I E  A +
Sbjct: 545 PNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQ 604

Query: 607 LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
           +L  + + +G ++L++N+YAA G WD  A+VR   R  G++KIPG +W++       F  
Sbjct: 605 ILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQSWIEVRKKVYTFSA 664

Query: 667 DDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
            +  +   ++IY +L  L   M    Y +  +
Sbjct: 665 GNLVHFGLEDIYVILEELNLHMASENYKLDSQ 696


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/743 (31%), Positives = 382/743 (51%), Gaps = 78/743 (10%)

Query: 25  KWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFT---RIRITAASHDVVLDSFAHII 81
           +   P NN ++        ++     G  S+A   ++   RIR+   ++     +F  +I
Sbjct: 72  RLASPSNNVYLWN----SIIRALTHNGLFSEALSLYSETQRIRLQPDTY-----TFPSVI 122

Query: 82  FCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL 141
             C  +      K +H   + +G   +  +   L+  Y  F+  + A  + E   +R  +
Sbjct: 123 NACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVV 182

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
            WN LIS Y  +G++ EAL +Y + ++  +  D++T  SVL+ACG +  V+ G ++H  I
Sbjct: 183 SWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLI 242

Query: 202 DACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           +    +  + V+N L+SMY KF  +   RR+FDKM+ RDAVSWNTMI  Y+  GL++E+ 
Sbjct: 243 EKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESI 302

Query: 261 QLFVEMQEE----------------------------------GVEVNVITWNTIAGGCL 286
           +LF+EM  +                                  G E +    N +     
Sbjct: 303 KLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYA 362

Query: 287 RTGNFKGVLELLSRMRTQET---------YL---------------------DSVATVIG 316
           + GN     E+ S M+ +++         Y+                     DSV  V+ 
Sbjct: 363 KCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVML 422

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L   + +G L LGKE+H    +  +     V N L+ MY++C ++  +  +F+    + I
Sbjct: 423 LSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 482

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ITWN++++   H +       +   M   GV P+  T+ SILP+C+ +A  + GKE H  
Sbjct: 483 ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGC 542

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           I +  + ++ + + N L+EMY++ G +  +  VF LM  +D VT+T+LI+  G+ GEG+ 
Sbjct: 543 IFKLGLESD-VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKK 601

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A++ F EM    I PDHV  VA++ ACSHSGLV EG   F RM   Y I P++EH+AC+V
Sbjct: 602 AVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVV 661

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL  R+ LL+KA++ I  MP  P S++W  LL AC++  +T I E  +E+++E  P+++G
Sbjct: 662 DLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTG 721

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
           YYVL++N+YAA G WD++  +R  ++  G++K PGC+W++  N    F        Q +E
Sbjct: 722 YYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEE 781

Query: 677 IYPLLGGLTELMKDAGYVVKEEF 699
           +  LLG L  LM   GY+   +F
Sbjct: 782 VNKLLGMLAGLMAKEGYIANLQF 804



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/532 (27%), Positives = 251/532 (47%), Gaps = 54/532 (10%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYNNAC 129
           F+ I           Q  +LH+  I LGL  + +   KL+  YA       SFS++    
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR--- 72

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            L   SN  Y   WN +I     +G ++EAL +Y + Q  R++ D +T+PSV+ AC  ++
Sbjct: 73  -LASPSNNVYL--WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           D +  + +H   +D      L++ NAL+ MY +F  +D AR++F++M  RD VSWN++IS
Sbjct: 130 DFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLIS 189

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            Y + G W EA +++   +  GV  +  T +++                           
Sbjct: 190 GYNANGYWNEALEIYYRFRNLGVVPDSYTMSSV--------------------------- 222

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   L AC  +G+++ G  IHG   +    +   V N L++MY +   L     +F
Sbjct: 223 --------LRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIF 274

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                +  ++WN+M+ GY+ +   EES  LF EM     +P+ +TI SIL  C  + +L+
Sbjct: 275 DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLE 333

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GK  H Y++    +       N L+ MYA+ G +  ++ VF  M  +D V++ S+I  Y
Sbjct: 334 FGKYVHDYMITSG-YECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 392

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G    A+KLF+ M K  +KPD VT V +LS  +  G +  G++    +  + G    
Sbjct: 393 IQNGSFDEAMKLFKMM-KTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM-GFNSN 450

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
           +     +VD+Y + G +  + ++   M        W T++ +C    +  +G
Sbjct: 451 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDI-ITWNTIIASCVHSEDCNLG 501


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/695 (32%), Positives = 364/695 (52%), Gaps = 29/695 (4%)

Query: 39  NLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHA 98
           NLL  +++   +G L  A     R+       D    +  H++  CG++ +   G   H 
Sbjct: 124 NLL--IREHIKQGRLDSAINVSCRMLRAGTRPDHF--TLPHVLKACGELPSYRCGSAFHG 179

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFL---VENSNIRYPLPWNLLISLYVRDGF 155
                G E N  +   LV  Y+       A  +   +    I   + WN ++S +V+   
Sbjct: 180 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 239

Query: 156 YAEALCVYKQM------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWS 208
              AL ++ +M      +    R D  +  ++L ACG +  V   + VH + I       
Sbjct: 240 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 299

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +FV NAL+  Y K G ++ A ++F+ M  +D VSWN M++ Y+  G ++ AF+LF  M++
Sbjct: 300 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 359

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           E + ++V+TW  +  G  + G     L L  +M    +  + V  +  L AC+ +GA   
Sbjct: 360 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 419

Query: 329 GKEIHGSAVRGCY--------GEYEN--VRNALITMYSRCKDLRHAYILFKMTA--EKSI 376
           G EIH  +++ C         GE E+  V NALI MYS+C+  + A  +F      E+++
Sbjct: 420 GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 479

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRS--GVEPNYVTIASILPLCARVANLQHGKEFH 434
           +TW  M+ G+     + ++  LF EM     GV PN  TI+ IL  CA +A ++ GK+ H
Sbjct: 480 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 539

Query: 435 CYILRRAMF-NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
            Y+LR   + +    + N L++MY++ G V  A+ VFD MS++  +++TS++ GYG+ G 
Sbjct: 540 AYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGR 599

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  AL +F++M K    PD +T + VL ACSH G+V +G   F+ M++ YG+ P+ EH+A
Sbjct: 600 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 659

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           C +DL  R+G L+KA   +  MP  PT+ +W  LL AC++H N  + E A  KL+E   E
Sbjct: 660 CAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAE 719

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N G Y LI+N+YA  G W  +A++R  M+  G++K PGC+WV      + F V D S+  
Sbjct: 720 NDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPL 779

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           + +IY LL  L + +K  GYV +  F   +   EE
Sbjct: 780 SPQIYALLESLIDRIKAMGYVPETNFALHDVDEEE 814



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 160/594 (26%), Positives = 271/594 (45%), Gaps = 107/594 (18%)

Query: 104 GLEKNPVLVPK-----LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
            L   P + P+     +V  Y +    + A  ++E       + WNLLI  +++ G    
Sbjct: 79  ALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDS 138

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALV 216
           A+ V  +M     R D+FT P VLKACGE+     G   H  I  C+  E ++F+ NALV
Sbjct: 139 AINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLI-CCNGFESNVFICNALV 197

Query: 217 SMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           +MY + G ++ A  +FD++ +R   D +SWN+++SA+        A  LF +M       
Sbjct: 198 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT------ 251

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                                  L+   +      D ++ V  L AC  + A+   KE+H
Sbjct: 252 -----------------------LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVH 288

Query: 334 GSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH--- 388
           G+A+R   G + +  V NALI  Y++C  + +A  +F M   K +++WN+M++GY+    
Sbjct: 289 GNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 346

Query: 389 -----------------LD---------------CAEESAFLFREMFRSGVEPNYVTIAS 416
                            LD               C+ E+  LFR+M  SG  PN VTI S
Sbjct: 347 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIIS 406

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMF---------NEHLLLWNSLVEMYARSGKVPEAK 467
           +L  CA +     G E H Y L+  +          +E L+++N+L++MY++      A+
Sbjct: 407 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 466

Query: 468 SVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ--IKPDHVTMVAVLSAC 523
           S+FD   +  R+ VT+T +I G+   G+   ALKLF EM      + P+  T+  +L AC
Sbjct: 467 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 526

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           +H   +  G KQ       +  +    +F   C++D+Y + G ++ A+ +   M    ++
Sbjct: 527 AHLAAIRIG-KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS-QKSA 584

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETR-----PENSGYYVLIANMYAATGC 630
             W +++    +H   G G  A +   + R     P++  + V+   +YA + C
Sbjct: 585 ISWTSMMTGYGMH---GRGSEALDIFDKMRKAGFVPDDITFLVV---LYACSHC 632


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/695 (32%), Positives = 364/695 (52%), Gaps = 29/695 (4%)

Query: 39  NLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHA 98
           NLL  +++   +G L  A     R+       D    +  H++  CG++ +   G   H 
Sbjct: 131 NLL--IREHIKQGRLDSAINVSCRMLRAGTRPDHF--TLPHVLKACGELPSYRCGSAFHG 186

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFL---VENSNIRYPLPWNLLISLYVRDGF 155
                G E N  +   LV  Y+       A  +   +    I   + WN ++S +V+   
Sbjct: 187 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 246

Query: 156 YAEALCVYKQM------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWS 208
              AL ++ +M      +    R D  +  ++L ACG +  V   + VH + I       
Sbjct: 247 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 306

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +FV NAL+  Y K G ++ A ++F+ M  +D VSWN M++ Y+  G ++ AF+LF  M++
Sbjct: 307 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 366

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           E + ++V+TW  +  G  + G     L L  +M    +  + V  +  L AC+ +GA   
Sbjct: 367 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 426

Query: 329 GKEIHGSAVRGCY--------GEYEN--VRNALITMYSRCKDLRHAYILFKMTA--EKSI 376
           G EIH  +++ C         GE E+  V NALI MYS+C+  + A  +F      E+++
Sbjct: 427 GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 486

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRS--GVEPNYVTIASILPLCARVANLQHGKEFH 434
           +TW  M+ G+     + ++  LF EM     GV PN  TI+ IL  CA +A ++ GK+ H
Sbjct: 487 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 546

Query: 435 CYILRRAMF-NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
            Y+LR   + +    + N L++MY++ G V  A+ VFD MS++  +++TS++ GYG+ G 
Sbjct: 547 AYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGR 606

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  AL +F++M K    PD +T + VL ACSH G+V +G   F+ M++ YG+ P+ EH+A
Sbjct: 607 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 666

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           C +DL  R+G L+KA   +  MP  PT+ +W  LL AC++H N  + E A  KL+E   E
Sbjct: 667 CAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAE 726

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N G Y LI+N+YA  G W  +A++R  M+  G++K PGC+WV      + F V D S+  
Sbjct: 727 NDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPL 786

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           + +IY LL  L + +K  GYV +  F   +   EE
Sbjct: 787 SPQIYALLESLIDRIKAMGYVPETNFALHDVDEEE 821



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 160/594 (26%), Positives = 271/594 (45%), Gaps = 107/594 (18%)

Query: 104 GLEKNPVLVPK-----LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
            L   P + P+     +V  Y +    + A  ++E       + WNLLI  +++ G    
Sbjct: 86  ALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDS 145

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALV 216
           A+ V  +M     R D+FT P VLKACGE+     G   H  I  C+  E ++F+ NALV
Sbjct: 146 AINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLI-CCNGFESNVFICNALV 204

Query: 217 SMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           +MY + G ++ A  +FD++ +R   D +SWN+++SA+        A  LF +M       
Sbjct: 205 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT------ 258

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                                  L+   +      D ++ V  L AC  + A+   KE+H
Sbjct: 259 -----------------------LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVH 295

Query: 334 GSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH--- 388
           G+A+R   G + +  V NALI  Y++C  + +A  +F M   K +++WN+M++GY+    
Sbjct: 296 GNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 353

Query: 389 -----------------LD---------------CAEESAFLFREMFRSGVEPNYVTIAS 416
                            LD               C+ E+  LFR+M  SG  PN VTI S
Sbjct: 354 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIIS 413

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMF---------NEHLLLWNSLVEMYARSGKVPEAK 467
           +L  CA +     G E H Y L+  +          +E L+++N+L++MY++      A+
Sbjct: 414 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 473

Query: 468 SVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ--IKPDHVTMVAVLSAC 523
           S+FD   +  R+ VT+T +I G+   G+   ALKLF EM      + P+  T+  +L AC
Sbjct: 474 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 533

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           +H   +  G KQ       +  +    +F   C++D+Y + G ++ A+ +   M    ++
Sbjct: 534 AHLAAIRIG-KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS-QKSA 591

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETR-----PENSGYYVLIANMYAATGC 630
             W +++    +H   G G  A +   + R     P++  + V+   +YA + C
Sbjct: 592 ISWTSMMTGYGMH---GRGSEALDIFDKMRKAGFVPDDITFLVV---LYACSHC 639


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/724 (31%), Positives = 377/724 (52%), Gaps = 74/724 (10%)

Query: 44  LKDFAGRGNLSKAFEAFT---RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACA 100
           ++     G  S+A   ++   RIR+   ++     +F  +I  C  +      K +H   
Sbjct: 146 IRALTHNGLFSEALSLYSETQRIRLQPDTY-----TFPSVINACAGLLDFEMAKSIHDRV 200

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           + +G   +  +   L+  Y  F+  + A  + E   +R  + WN LIS Y  +G++ EAL
Sbjct: 201 LXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEAL 260

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMY 219
            +Y + ++  +  D++T  SVL+ACG +  V+ G ++H  I+    +  + V+N L+SMY
Sbjct: 261 EIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMY 320

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE---------- 269
            KF  +   RR+FDKM+ RDAVSWNTMI  Y+  GL++E+ +LF+EM  +          
Sbjct: 321 CKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITS 380

Query: 270 ------------------------GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
                                   G E +    N +     + GN     E+ S M+ ++
Sbjct: 381 ILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKD 440

Query: 306 T---------YL---------------------DSVATVIGLGACSHVGALKLGKEIHGS 335
           +         Y+                     DSV  V+ L   + +G L LGKE+H  
Sbjct: 441 SVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCD 500

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
             +  +     V N L+ MY++C ++  +  +F+    + IITWN++++   H +     
Sbjct: 501 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG 560

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             +   M   GV P+  T+ SILP+C+ +A  + GKE H  I +  + ++ + + N L+E
Sbjct: 561 LRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD-VPVGNVLIE 619

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MY++ G +  +  VF LM  +D VT+T+LI+  G+ GEG+ A++ F EM    I PDHV 
Sbjct: 620 MYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA 679

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            VA++ ACSHSGLV EG   F RM   Y I P++EH+AC+VDL  R+ LL+KA++ I  M
Sbjct: 680 FVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSM 739

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P  P S++W  LL AC++  +T I +  +E+++E  P+++GYYVL++N+YAA G WD++ 
Sbjct: 740 PLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVR 799

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
            +R  ++  G++K PGC+W++  N    F      + Q +E+  LLG L  LM   GY+ 
Sbjct: 800 SIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIA 859

Query: 696 KEEF 699
             +F
Sbjct: 860 NLQF 863



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 250/532 (46%), Gaps = 54/532 (10%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYNNAC 129
           F+ I           Q  +LH+  I LGL  + +   KL+  YA       SFS++    
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR--- 131

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            L   SN  Y   WN +I     +G ++EAL +Y + Q  R++ D +T+PSV+ AC  ++
Sbjct: 132 -LASPSNNVYX--WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 188

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           D +  + +H   +       L++ NAL+ MY +F  +D AR++F++M  RD VSWN++IS
Sbjct: 189 DFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLIS 248

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            Y + G W EA +++   +  GV  +  T +++                           
Sbjct: 249 GYNANGYWNEALEIYYRFRNLGVVPDSYTMSSV--------------------------- 281

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   L AC  +G+++ G  IHG   +    +   V N L++MY +   L     +F
Sbjct: 282 --------LRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIF 333

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                +  ++WN+M+ GY+ +   EES  LF EM     +P+ +TI SIL  C  + +L+
Sbjct: 334 DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLE 392

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GK  H Y++    +       N L+ MYA+ G +  ++ VF  M  +D V++ S+I  Y
Sbjct: 393 FGKYVHDYMITSG-YECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 451

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G    A+KLF+ M K  +KPD VT V +LS  +  G +  G++    +  + G    
Sbjct: 452 IQNGSFDEAMKLFKMM-KTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM-GFNSN 509

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
           +     +VD+Y + G +  + ++   M        W T++ +C    +  +G
Sbjct: 510 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDI-ITWNTIIASCVHSEDCNLG 560



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 186/361 (51%), Gaps = 27/361 (7%)

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLS---RMRTQ-ETYLDSVATVIGLGACSHVGALKLG 329
           NV  WN+I       G F   L L S   R+R Q +TY  +  +VI   AC+ +   ++ 
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTY--TFPSVIN--ACAGLLDFEMA 193

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT-- 387
           K IH   +   +G    + NALI MY R  DL  A  +F+    + +++WNS++SGY   
Sbjct: 194 KSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 253

Query: 388 -HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
            + + A E  + FR +   GV P+  T++S+L  C  + +++ G   H  ++ +    + 
Sbjct: 254 GYWNEALEIYYRFRNL---GVVPDSYTMSSVLRACGGLGSVEEGDIIHG-LIEKIGIKKD 309

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           +++ N L+ MY +   + + + +FD M  RD V++ ++I GY   G    ++KLF EM  
Sbjct: 310 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-V 368

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM-TSIYGIFPQLEHFACMVDLYGRAGLL 565
           NQ KPD +T+ ++L AC H G +  G+   + M TS Y       +   ++++Y + G L
Sbjct: 369 NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNI--LINMYAKCGNL 426

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE--KLLET--RPENSGYYVLI 621
             ++E+ + M     S  W +++    ++   G  + A +  K+++T  +P++  Y +L+
Sbjct: 427 LASQEVFSGMK-CKDSVSWNSMI---NVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLL 482

Query: 622 A 622
           +
Sbjct: 483 S 483


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/656 (34%), Positives = 358/656 (54%), Gaps = 25/656 (3%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYNNA 128
           +F  +   C  + +L+ G  LHA     G   N  +   +V+ Y        + +++++ 
Sbjct: 261 TFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDL 320

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG-DNFTYPSVLKACGE 187
           C    +  I+  + WN ++S Y+       AL ++ +M +R +   D  +  ++L AC  
Sbjct: 321 C----HRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS 376

Query: 188 MMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
           +     GR VH   I +     +FV NA+V MY K G+++ A ++F +M  +D VSWN M
Sbjct: 377 LAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAM 436

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           ++ Y+  G  + A  LF  M EE +E++V+TW  +  G  + G     L++  +M    +
Sbjct: 437 VTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGS 496

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY--------GEYENVRNALITMYSRC 358
             + V  V  L AC  VGAL  GKE H  A++            +   V N LI MY++C
Sbjct: 497 RPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKC 556

Query: 359 KDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFR--SGVEPNYVTI 414
           +    A  +F   +  ++ ++TW  M+ GY     A  +  LF  MF+    ++PN  T+
Sbjct: 557 QSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTL 616

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           +  L  CAR+A L+ G++ H Y+LR    +  L + N L++MY++SG V  A+ VFD M 
Sbjct: 617 SCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP 676

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           +R+ V++TSL+ GYG+ G G  AL++F+EM K  + PD +T + VL ACSHSG+V  G  
Sbjct: 677 QRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGIN 736

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            F RM+  +G+ P  EH+ACMVDL+GRAG L +A ++I +MP  PT  +W  LL AC++H
Sbjct: 737 FFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLH 796

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            N  +GE+AA +LLE    N G Y L++N+YA    W  +A++R  M+  G++K PGC+W
Sbjct: 797 SNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSW 856

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEIG 710
           +      + F V D S+ Q+Q+IY  L  L + +K  GYV +  F   +   EE G
Sbjct: 857 IQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKG 912



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 161/581 (27%), Positives = 259/581 (44%), Gaps = 102/581 (17%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP----- 142
            +LA  K LH  +I  GL  +  L   L+  Y + +    A  L+E      P P     
Sbjct: 172 NSLAHAKLLHQQSIMQGLLFH--LATNLIGTYIASNSTAYAILLLERLP---PSPSSVFW 226

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN LI   +  G   +   +Y+QM+S     D++T+P V KAC  +  +  G  +H+ + 
Sbjct: 227 WNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVS 286

Query: 203 -ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKE 258
            +    ++FV NA+VSMYGK G +  A  +FD +  R   D VSWN+++SAY    +W  
Sbjct: 287 RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAY----MW-- 340

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-L 317
                                          +    L L  +M T+      V +++  L
Sbjct: 341 -----------------------------ASDANTALALFHKMTTRHLMSPDVISLVNIL 371

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+ + A   G+++HG ++R    +   V NA++ MY++C  +  A  +F+    K ++
Sbjct: 372 PACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVV 431

Query: 378 TWNSMLSGYTH--------------------LDCAEESAFL---------------FREM 402
           +WN+M++GY+                     LD    +A +               FR+M
Sbjct: 432 SWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF-------NEHLLLWNSLVE 455
              G  PN VT+ S+L  C  V  L HGKE HCY ++  +         + L + N L++
Sbjct: 492 CDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLID 551

Query: 456 MYARSGKVPEAKSVFDLMS--RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK--NQIKP 511
           MYA+      A+ +FD +S   RD VT+T +I GY   G+   AL+LF  M K    IKP
Sbjct: 552 MYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKP 611

Query: 512 DHVTMVAVLSACSH-SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           +  T+   L AC+  + L    Q     + + YG    L    C++D+Y ++G ++ A+ 
Sbjct: 612 NDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSV-MLFVANCLIDMYSKSGDVDTAQI 670

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +   MP    +  W +L+    +H   G GE A     E R
Sbjct: 671 VFDNMPQR-NAVSWTSLMTGYGMH---GRGEDALRVFDEMR 707



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 137/297 (46%), Gaps = 11/297 (3%)

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
            T L S AT I + A     +L   K +H  ++    G   ++   LI  Y       +A
Sbjct: 154 NTRLLSCAT-IPITALKECNSLAHAKLLHQQSI--MQGLLFHLATNLIGTYIASNSTAYA 210

Query: 365 YILFKM--TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
            +L +    +  S+  WN ++    HL    +   L+R+M   G  P++ T   +   CA
Sbjct: 211 ILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACA 270

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEV 479
            +++L  G   H  +  R+ F  ++ + N++V MY + G +  A ++FD +  R   D V
Sbjct: 271 NLSSLSLGASLHATV-SRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLV 329

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           ++ S+++ Y    +   AL LF +M  ++ + PD +++V +L AC+     + G +Q   
Sbjct: 330 SWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRG-RQVHG 388

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
            +   G+   +     +VD+Y + G + +A ++  +M +    +  A + G  Q  R
Sbjct: 389 FSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGR 445


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 322/541 (59%), Gaps = 8/541 (1%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           L WN +   +  +     AL +Y  M S  +  +++++P +LK+C +   +  G+ +H  
Sbjct: 31  LIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGH 90

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +   ++  ++V+ +L+SMY + G+++ A ++FD+   R  VS+  +I+ YAS+G    A
Sbjct: 91  VLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNA 150

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF E+  +    +V++WN +  G + T NFK  LEL   M       D    V  + A
Sbjct: 151 RKLFDEISVK----DVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSA 206

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+  G+++LG+++H       +G    + N LI +YS+C ++  A  LF+  A+K +I+W
Sbjct: 207 CAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISW 266

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+++ G+TH++  +E+  LF+EM RSG  PN VT+ S+LP CA +  +  G+  H YI +
Sbjct: 267 NTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINK 326

Query: 440 R--AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           R   + N   LL  SL++MYA+ G +  AK VFD M  R   ++ ++I G+ + G+   A
Sbjct: 327 RLKGVTNASSLL-TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAA 385

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
             LF +M KN I PD +T V +LSACSHSG++  G+  F  M+  Y I P+LEH+ CM+D
Sbjct: 386 FDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMID 445

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L G  GL  +AKE+I  MP  P   +W +LL AC++H N  +GE  A+ L++  PEN G 
Sbjct: 446 LLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGS 505

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           YVL++N+YA  G WD++AK+RT + D G++K PGC+ ++  +V   F++ D  + + +EI
Sbjct: 506 YVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREI 565

Query: 678 Y 678
           Y
Sbjct: 566 Y 566



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 207/470 (44%), Gaps = 74/470 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           SF  ++  C K KAL +G+Q+H   + LG +                             
Sbjct: 67  SFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRS 126

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+T YAS    NNA  L +  +++  + WN +IS YV    + EAL +YK
Sbjct: 127 SHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYK 186

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
            M    ++ D  T  +V+ AC +   ++ GR +HS I D     ++ + N L+ +Y K G
Sbjct: 187 DMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCG 246

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +V+ A  LF  + ++D +SWNT+I  +    L+KEA  LF EM   G   N +T  ++  
Sbjct: 247 EVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSV-- 304

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG- 342
                                            L AC+H+GA+ +G+ IH    +   G 
Sbjct: 305 ---------------------------------LPACAHLGAIDIGRWIHVYINKRLKGV 331

Query: 343 -EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               ++  +LI MY++C D+  A  +F     +S+ +WN+M+ G+     A  +  LF +
Sbjct: 332 TNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSK 391

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M ++G++P+ +T   +L  C+    L  G+     + +       L  +  ++++    G
Sbjct: 392 MRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCG 451

Query: 462 KVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
              EAK +   M    D V + SL+    +       ++L E   +N IK
Sbjct: 452 LFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNN----VELGESYAQNLIK 497



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 183/375 (48%), Gaps = 18/375 (4%)

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
           F  +  A  +F+ + E + + WNTM   +A       A +L+V M   G+  N  ++  +
Sbjct: 12  FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFL 71

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
              C ++       ++   +      LD       +   +  G L+   ++   +     
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
             Y     ALIT Y+    + +A  LF   + K +++WN+M+SGY      +E+  L+++
Sbjct: 132 VSY----TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKD 187

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M ++ V+P+  T+ +++  CA+  +++ G++ H +I     F  ++ + N L+++Y++ G
Sbjct: 188 MMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHG-FGSNIKIVNVLIDLYSKCG 246

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           +V  A  +F  ++++D +++ +LI G+      + AL LF+EM ++   P+ VTM++VL 
Sbjct: 247 EVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 306

Query: 522 ACSHSGLVVEGQ-------KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           AC+H G +  G+       K+ + +T+   +   L      +D+Y + G +  AK++   
Sbjct: 307 ACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSL------IDMYAKCGDIEAAKQVFDS 360

Query: 575 MPYTPTSAMWATLLG 589
           M     S+  A + G
Sbjct: 361 MLTRSLSSWNAMIFG 375



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 130/289 (44%), Gaps = 14/289 (4%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           N  +A E +  +  T    D    +   ++  C +  ++  G+QLH+     G   N  +
Sbjct: 177 NFKEALELYKDMMKTNVKPDE--STMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKI 234

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
           V  L+  Y+       AC L +    +  + WN LI  +     Y EAL ++++M     
Sbjct: 235 VNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGE 294

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSMYGKFGQVD 226
             ++ T  SVL AC  +  +D GR +H  I+       +  SL    +L+ MY K G ++
Sbjct: 295 SPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT--SLIDMYAKCGDIE 352

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A+++FD ML R   SWN MI  +A  G    AF LF +M++ G++ + IT+  +   C 
Sbjct: 353 AAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACS 412

Query: 287 RTGNF---KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            +G     + +   +S+       L+    +I L    H G  K  KE+
Sbjct: 413 HSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDL--LGHCGLFKEAKEM 459


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/613 (34%), Positives = 347/613 (56%), Gaps = 11/613 (1%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWN 144
           K L   + +HA  I  GL      + KL+ F      ++   + +    +I+ P  L WN
Sbjct: 13  KTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWN 72

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-- 202
            +   +        AL +Y  M S  +  +++T+P +LKAC +      G+ +H  +   
Sbjct: 73  TMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKL 132

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
            C +  L+VH +L++MY K G+ + AR++FD+   RD VS+  +I  YAS G    A ++
Sbjct: 133 GC-DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKM 191

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F E+  +    +V++WN +  G   TGN+K  LEL   M       D    V  L AC+ 
Sbjct: 192 FDEIPVK----DVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQ 247

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
             +++LG+++H       +G    + NALI +Y +C ++  A  LF+  + K +I+WN++
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTL 307

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           + GYTH++  +E+  LF+EM RSG  PN VT+ SILP CA +  +  G+  H YI +R  
Sbjct: 308 IGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 367

Query: 443 -FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
             +    L  SL++MYA+ G +  A+ VFD M  R   ++ ++I G+ + G    A  +F
Sbjct: 368 GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIF 427

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M K+ I+PD +T V +LSACSHSG++  G+  F  MT  Y I P+LEH+ CM+DL G 
Sbjct: 428 SRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGH 487

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           +GL  +A+E+I  M   P   +W +LL AC++H N  +GE  A+ L++  P+NSG YVL+
Sbjct: 488 SGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLL 547

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+YA  G W+++AK R  + D G++K+PGC+ ++  +V   F++ D  + + +EIY +L
Sbjct: 548 SNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGML 607

Query: 682 GGLTELMKDAGYV 694
             +  L+++AG+V
Sbjct: 608 EEMEVLLEEAGFV 620



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 208/471 (44%), Gaps = 76/471 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K KA  +G+Q+H   + LG +                             
Sbjct: 105 TFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQS 164

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+  YAS     +A  + +   ++  + WN LIS Y   G Y EAL ++K
Sbjct: 165 SHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFK 224

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M    ++ D  T  +VL AC +   ++ GR VHS ID  H +  +L + NAL+ +Y K 
Sbjct: 225 EMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKC 283

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+V+ A  LF+ +  +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  +I 
Sbjct: 284 GEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSI- 342

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L AC+H+GA+ +G+ IH    +   G
Sbjct: 343 ----------------------------------LPACAHLGAIDIGRWIHVYIDKRLKG 368

Query: 343 --EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                ++R +LI MY++C D+  A  +F     +S+ +WN+M+ G+     A  +  +F 
Sbjct: 369 VSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFS 428

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M + G+EP+ +T   +L  C+    L  G+     +         L  +  ++++   S
Sbjct: 429 RMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHS 488

Query: 461 GKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           G   EA+ + + M    D V + SL+    + G     ++L E   +N IK
Sbjct: 489 GLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGN----VELGESFAQNLIK 535



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 9/248 (3%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  GN  +A E F  +  T    D    +   ++  C +  ++  G+Q+H+     G  
Sbjct: 210 YAETGNYKEALELFKEMMKTNVKPDE--STMVTVLSACAQSASIELGRQVHSWIDDHGFG 267

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +V  L+  Y        A  L E  + +  + WN LI  Y     Y EAL ++++M
Sbjct: 268 SNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 327

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSMYGK 221
                  +  T  S+L AC  +  +D GR +H  ID       +  SL    +L+ MY K
Sbjct: 328 LRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSL--RTSLIDMYAK 385

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A+++FD ML R   SWN MI  +A  G    AF +F  M+++G+E + IT+  +
Sbjct: 386 CGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGL 445

Query: 282 AGGCLRTG 289
              C  +G
Sbjct: 446 LSACSHSG 453


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/620 (35%), Positives = 340/620 (54%), Gaps = 17/620 (2%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP- 142
           C  + +L   KQ+H+  I  GL        KL+ F A     + +  L    +I +  P 
Sbjct: 35  CPDIPSL---KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPN 91

Query: 143 ---WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
              WN LI  +        +L ++ QM    +  ++ T+PS+ K+C +       + +H+
Sbjct: 92  IFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHA 151

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +         VH +L+ MY + G++  AR +FDK   RDAVS+  +I+ Y S+G   +
Sbjct: 152 HALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDD 211

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A +LF E+  +    +V++WN +  G +++G F+  L   +RM+  +   +    V  L 
Sbjct: 212 ARRLFDEIPAK----DVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLS 267

Query: 319 ACSHVGALKLGKEIHGSAVRG-CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
           AC H+ +L+LGK I GS VR   +G+   + NAL+ MYS+C ++  A  LF    +K +I
Sbjct: 268 ACGHLRSLELGKWI-GSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVI 326

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            WN+M+ GY HL   EE+  LF  M R  V PN VT  ++LP CA +  L  GK  H YI
Sbjct: 327 LWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYI 386

Query: 438 ---LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              L+      ++ LW S++ MYA+ G V  A+ VF  M  R   ++ ++I+G  + G  
Sbjct: 387 DKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHA 446

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL LFEEM     +PD +T V VLSAC+ +G V  G + F  M   YGI P+L+H+ C
Sbjct: 447 ERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGC 506

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           M+DL  R+G  ++AK ++  M   P  A+W +LL AC+IH     GE+ AE+L E  PEN
Sbjct: 507 MIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPEN 566

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           SG YVL++N+YA  G WD +AK+RT + D G++K+PGC  ++   V   FLV D  + Q+
Sbjct: 567 SGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQS 626

Query: 675 QEIYPLLGGLTELMKDAGYV 694
           + I+ +L  +  L+++ G+V
Sbjct: 627 ENIFRMLDEVDRLLEETGFV 646



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 208/469 (44%), Gaps = 78/469 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +   C K KA  + KQLHA A+ L L  +P +   L+  Y+      +A  + + S
Sbjct: 129 TFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKS 188

Query: 136 NIRYP-------------------------------LPWNLLISLYVRDGFYAEALCVYK 164
            +R                                 + WN +I+ YV+ G + EAL  + 
Sbjct: 189 TLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFT 248

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           +MQ   +  +  T  SVL ACG +  ++ G+ + S + D     +L + NALV MY K G
Sbjct: 249 RMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCG 308

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++  AR+LFD M ++D + WNTMI  Y    L++EA  LF  M  E V  N +T+  +  
Sbjct: 309 EIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAV-- 366

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                            L AC+ +GAL LGK +H    +   G 
Sbjct: 367 ---------------------------------LPACASLGALDLGKWVHAYIDKNLKGT 393

Query: 344 YENVRN-----ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             NV N     ++I MY++C  +  A  +F+    +S+ +WN+M+SG      AE +  L
Sbjct: 394 -GNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGL 452

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F EM   G +P+ +T   +L  C +   ++ G  +   + +    +  L  +  ++++ A
Sbjct: 453 FEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLA 512

Query: 459 RSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGR----VALKLFE 502
           RSGK  EAK +   M    D   + SL+    I G+      VA +LFE
Sbjct: 513 RSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFE 561



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 7/248 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G   +A   FTR++    S +    +   ++  CG +++L  GK + +     G  
Sbjct: 234 YVQSGRFEEALACFTRMQEADVSPNQ--STMVSVLSACGHLRSLELGKWIGSWVRDRGFG 291

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN  LV  LV  Y+       A  L +    +  + WN +I  Y     Y EAL +++ M
Sbjct: 292 KNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVM 351

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN-----ALVSMYGK 221
               +  ++ T+ +VL AC  +  +D G+ VH+ ID   + +  V+N     +++ MY K
Sbjct: 352 LRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAK 411

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G V+VA ++F  M  R   SWN MIS  A  G  + A  LF EM  EG + + IT+  +
Sbjct: 412 CGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGV 471

Query: 282 AGGCLRTG 289
              C + G
Sbjct: 472 LSACTQAG 479


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/601 (34%), Positives = 339/601 (56%), Gaps = 13/601 (2%)

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWNLLISLYVRDGFYA 157
           I +GL      + KL+ F      ++   + +    +I+ P  L WN +I  +       
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALV 216
            AL +Y  M S  +  +++T+P + K+C +      G+ +H+ I        L VH +L+
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
           SMY + G V+ A ++FD    RD VS+  MI+ YAS+G   +A ++F E+  +    +V+
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIK----DVV 176

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           +WN +  G    G +K  LEL + M   +   D       L  C+H G ++LG++IH   
Sbjct: 177 SWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWI 236

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
               +G    + NALI +YS+C ++  A+ LF+    K +I+WN+++ GY +++  +E+ 
Sbjct: 237 DNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEAL 296

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI---LRRAMFNEHLLLWNSL 453
            +F+EM + G  PN VT+ SILP CA +  +  G+  H YI   L+  + N  L    SL
Sbjct: 297 LVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSL--QTSL 354

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MYA+ G +  A  VFD +  +   +  ++I G+ + G    A  L   M K+ I+PD 
Sbjct: 355 IDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDD 414

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           +T V +LSACSH+GL   G+K F+ MT  Y I P+LEH+ CM+DL GR+GL  +A+E+I 
Sbjct: 415 ITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELIN 474

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
            M   P   +W +LL AC+IH+N  +GE  A+KL++  P+N G YVL++N+YA +  WD 
Sbjct: 475 SMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDD 534

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           +A+VRT + D G++K+PGC+ ++  ++   FL+ D  + Q +EIY +L  +  L+ + G+
Sbjct: 535 VARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGF 594

Query: 694 V 694
           V
Sbjct: 595 V 595



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 197/446 (44%), Gaps = 72/446 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGL------------------------------ 105
           +F  +   C K KA  +GKQ+HA  +  GL                              
Sbjct: 80  TFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTS 139

Query: 106 -EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    ++T YAS    + A  + +   I+  + WN +IS Y   G Y EAL ++ 
Sbjct: 140 SHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFN 199

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M    ++ D  T  +VL  C    +V+ GR +HS ID  H +  +L + NAL+ +Y K 
Sbjct: 200 EMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDN-HGFGSNLKLVNALIDLYSKC 258

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+++ A  LF+ +  +D +SWNT+I  YA     KEA  +F EM + G   N +T  +I 
Sbjct: 259 GEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSI- 317

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L AC+H+GA+ +G+ IH    +   G
Sbjct: 318 ----------------------------------LPACAHLGAIDIGRWIHVYIDKKLKG 343

Query: 343 EYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
              N  ++ +LI MY++C ++  A  +F     KS+ + N+M+ G+     A+ +  L  
Sbjct: 344 IITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLS 403

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M + G+EP+ +T   +L  C+       G++    +         L  +  ++++  RS
Sbjct: 404 RMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRS 463

Query: 461 GKVPEAKSVFDLMSRR-DEVTYTSLI 485
           G   EA+ + + M+   D V + SL+
Sbjct: 464 GLFKEAEELINSMTMEPDGVIWGSLL 489



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 155/386 (40%), Gaps = 48/386 (12%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +A E F  +       D    + A ++  C     +  G+Q+H+     G  
Sbjct: 185 YAEIGRYKEALELFNEMMKMDVKPDE--STMATVLSTCTHSGNVELGRQIHSWIDNHGFG 242

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  LV  L+  Y+       A  L E    +  + WN LI  Y     + EAL V+++M
Sbjct: 243 SNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEM 302

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE---WSLFVHNALVSMYGKFG 223
                  ++ T  S+L AC  +  +D GR +H  ID   +    +  +  +L+ MY K G
Sbjct: 303 LKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCG 362

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            ++ A ++FD +L +   S N MI  +A  G    AF L   M+++G+E + IT      
Sbjct: 363 NIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDIT------ 416

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                  F G+                      L ACSH G   LG++I  S       E
Sbjct: 417 -------FVGL----------------------LSACSHAGLSDLGRKIFKSMTLDYRIE 447

Query: 344 YE-NVRNALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
            +      +I +  R    + A  L   MT E   + W S+L         E    + ++
Sbjct: 448 PKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQK 507

Query: 402 MFRSGVEP----NYVTIASILPLCAR 423
           + +  +EP    +YV +++I    AR
Sbjct: 508 LMK--IEPKNPGSYVLLSNIYATSAR 531


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/612 (34%), Positives = 342/612 (55%), Gaps = 9/612 (1%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTF---YASFSLYNNACFLVENSNIRYPLPWN 144
           K L   + +HA  I  GL      + +L+ F     +F     A  + E       L WN
Sbjct: 13  KTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWN 72

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
            +   +        A+ +Y  M S  +  +++T+P +LK+C ++     G+ +H   +  
Sbjct: 73  TMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKL 132

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
            +E  L+VH +L+SMY K G+   A ++FD    RD VS+  +I+ YAS+G  + A ++F
Sbjct: 133 GYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMF 192

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            E+  +    +V++WN I  G   TGN K  L+L   M       D    V  + AC+  
Sbjct: 193 DEIPVK----DVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQS 248

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           G+++LG+++H        G    + NALI +YS+C ++  A  LF+  + K +I+WN+M+
Sbjct: 249 GSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMI 308

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM- 442
            GYTHL+  +E+  LF+EM RSG  PN VT+ SILP CA++  +  G+  H YI +R   
Sbjct: 309 GGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKG 368

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
                 L  SL++MYA+ G +  A  VF+ M  R      ++I G+ + G    A  +F 
Sbjct: 369 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFS 428

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M KN I+PD +T V +LSACSHSG++  G++ F  MT  Y I P+LEH+ CM+DL G  
Sbjct: 429 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHL 488

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           GL  +A+E+I  M   P   +W +LL AC++H N  +GE  A+KL++  PEN G YVL++
Sbjct: 489 GLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLS 548

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+YA  G W+++A +R  + D G++K+PGC+ ++  +V   F++ D  + + +EIY +L 
Sbjct: 549 NIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 608

Query: 683 GLTELMKDAGYV 694
            +  L+++AG+V
Sbjct: 609 EMEVLLEEAGFV 620



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 130/535 (24%), Positives = 221/535 (41%), Gaps = 115/535 (21%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K+K   +G+Q+H   + LG E                             
Sbjct: 105 TFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGS 164

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+T YAS     +A  + +   ++  + WN +IS Y   G   EAL ++K
Sbjct: 165 SHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFK 224

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFG 223
           +M    ++ D  T  +V+ AC +   +  GR VHS ID     S L + NAL+ +Y K G
Sbjct: 225 EMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCG 284

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +V+ A  LF  +  +D +SWNTMI  Y    L+KEA  LF EM   G   N +T  +I  
Sbjct: 285 EVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSI-- 342

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH---GSAVRGC 340
                                            L AC+ +GA+  G+ IH      ++G 
Sbjct: 343 ---------------------------------LPACAQLGAIDFGRWIHVYIDKRIKGV 369

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                ++R +LI MY++C D+  A+ +F     +++   N+M+ G+     A  +  +F 
Sbjct: 370 TNA-SSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFS 428

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M ++G+EP+ +T   +L  C+    L  G+                 ++ S+ + Y  +
Sbjct: 429 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRR----------------IFRSMTQNYKIT 472

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE----MNKNQIKPDHVTM 516
            K+     + DL+                        L LF+E    +N   ++PD V  
Sbjct: 473 PKLEHYGCMIDLLGH----------------------LGLFKEAEEMINTMTMEPDGVIW 510

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
            ++L AC   G V  G+   +++  I    P    +  + ++Y  AG  N+   I
Sbjct: 511 CSLLKACKMHGNVELGESFAQKLIKIEPENPG--SYVLLSNIYATAGRWNEVANI 563



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 179/440 (40%), Gaps = 83/440 (18%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  GN  +A + F  +  T    D    +   ++  C +  ++  G+Q+H+     
Sbjct: 207 ISGYADTGNNKEALDLFKEMMKTNVKPDE--STMVTVVSACAQSGSIQLGRQVHSWIDDH 264

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL  N  +V  L+  Y+       AC L +  + +  + WN +I  Y     Y EAL ++
Sbjct: 265 GLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLF 324

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSM 218
           ++M       ++ T  S+L AC ++  +DFGR +H  ID       +  SL    +L+ M
Sbjct: 325 QEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSL--RTSLIDM 382

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G ++ A ++F+ M  R   + N MI  +A  G    AF +F  M++ G+E + IT 
Sbjct: 383 YAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDIT- 441

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                       F G+L                       ACSH G L LG+ I  S  +
Sbjct: 442 ------------FVGLLS----------------------ACSHSGMLDLGRRIFRSMTQ 467

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
                           Y     L H               +  M+    HL   +E+  +
Sbjct: 468 N---------------YKITPKLEH---------------YGCMIDLLGHLGLFKEAEEM 497

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN--EHLLLWNSLVEM 456
              M    +EP+ V   S+L  C    N++ G+ F   +++    N   ++LL N    +
Sbjct: 498 INTM---TMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSN----I 550

Query: 457 YARSGKVPEAKSVFDLMSRR 476
           YA +G+  E  ++  L++ +
Sbjct: 551 YATAGRWNEVANIRALLNDK 570


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/662 (33%), Positives = 351/662 (53%), Gaps = 27/662 (4%)

Query: 74  LDSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           LD F   H++  CG++ +   G   H      G E N  +   LV  Y+       A  +
Sbjct: 8   LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 67

Query: 132 ---VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM------QSRRIRGDNFTYPSVL 182
              +    I   + WN ++S +V+      AL ++ +M      +    R D  +  ++L
Sbjct: 68  FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 127

Query: 183 KACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
            ACG +  V   + VH + I       +FV NAL+  Y K G ++ A ++F+ M  +D V
Sbjct: 128 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 187

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SWN M++ Y+  G +K AF+LF  M++E + ++++TW  +  G  + G     L +  +M
Sbjct: 188 SWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 247

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY--------GEYEN--VRNAL 351
               +  + V  +  L AC+ +GA   G EIH  +++ C         GE E+  V NAL
Sbjct: 248 IFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 307

Query: 352 ITMYSRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRS--GV 407
           I MYS+C+  + A  +F      E++++TW  M+ G+     + ++  LF EM     GV
Sbjct: 308 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 367

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH-LLLWNSLVEMYARSGKVPEA 466
            PN  TI+ IL  CA +A ++ GK+ H Y+LR   ++     + N L+ MY++ G V  A
Sbjct: 368 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 427

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + VFD MS++  +++TS++ GYG+ G G  AL +F++M K    PD +T + VL ACSH 
Sbjct: 428 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 487

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G+V +G   F+ M++ YG+ P+ EH+A  +DL  R G L+KA + +  MP  PT+ +W  
Sbjct: 488 GMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVA 547

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           LL AC++H N  + E A  KL+E   EN G Y LI+N+YA  G W  +A++R  M+  G+
Sbjct: 548 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 607

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIV 706
           +K PGC+WV      + F V D S+  + +IY LL  L + +K  GYV +  F   +   
Sbjct: 608 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDE 667

Query: 707 EE 708
           EE
Sbjct: 668 EE 669



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/521 (27%), Positives = 242/521 (46%), Gaps = 102/521 (19%)

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVAR 229
           R D+FT P VLKACGE+     G   H  I  C+  E ++F+ NALV+MY + G ++ A 
Sbjct: 7   RLDHFTLPHVLKACGELPSYRCGSAFHGLI-CCNGFESNVFICNALVAMYSRCGSLEEAS 65

Query: 230 RLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            +FD++ +R   D +SWN+++SA+        A  LF +M                    
Sbjct: 66  MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT------------------- 106

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                     L+   +      D ++ V  L AC  + A+   KE+HG+A+R   G + +
Sbjct: 107 ----------LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN--GTFLD 154

Query: 347 --VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH---------------- 388
             V NALI  Y++C  + +A  +F M   K +++WN+M++GY+                 
Sbjct: 155 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 214

Query: 389 ----LD---------------CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
               LD               C+ E+  +FR+M  SG  PN VTI S+L  CA +     
Sbjct: 215 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 274

Query: 430 GKEFHCYILRRAMF---------NEHLLLWNSLVEMYARSGKVPEAKSVFD--LMSRRDE 478
           G E H Y L+  +          +E L+++N+L++MY++      A+S+FD   +  R+ 
Sbjct: 275 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 334

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQ--IKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           VT+T +I G+   G+   ALKLF EM      + P+  T+  +L AC+H   +  G KQ 
Sbjct: 335 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG-KQI 393

Query: 537 ERMTSIYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
                 +  +    +F   C++++Y + G ++ A+ +   M    ++  W +++    +H
Sbjct: 394 HAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMH 452

Query: 595 RNTGIGEWAAEKLLETR-----PENSGYYVLIANMYAATGC 630
              G G  A +   + R     P++  + V+   +YA + C
Sbjct: 453 ---GRGSEALDIFDKMRKAGFVPDDITFLVV---LYACSHC 487



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 15/222 (6%)

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M R+G   ++ T+  +L  C  + + + G  FH  I     F  ++ + N+LV MY+R G
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCG 59

Query: 462 KVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMN------KNQIKPD 512
            + EA  +FD +++R   D +++ S+++ +        AL LF +M           + D
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            +++V +L AC  S   V   K+        G F  +     ++D Y + GL+  A ++ 
Sbjct: 120 IISIVNILPACG-SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 178

Query: 573 TKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
             M +    +  A + G  Q    +G  + A E     R EN
Sbjct: 179 NMMEFKDVVSWNAMVAGYSQ----SGNFKAAFELFKNMRKEN 216


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/662 (33%), Positives = 351/662 (53%), Gaps = 27/662 (4%)

Query: 74  LDSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           LD F   H++  CG++ +   G   H      G E N  +   LV  Y+       A  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 132 ---VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM------QSRRIRGDNFTYPSVL 182
              +    I   + WN ++S +V+      AL ++ +M      +    R D  +  ++L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 183 KACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
            ACG +  V   + VH + I       +FV NAL+  Y K G ++ A ++F+ M  +D V
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 294

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SWN M++ Y+  G +K AF+LF  M++E + ++++TW  +  G  + G     L +  +M
Sbjct: 295 SWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY--------GEYEN--VRNAL 351
               +  + V  +  L AC+ +GA   G EIH  +++ C         GE E+  V NAL
Sbjct: 355 IFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 414

Query: 352 ITMYSRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRS--GV 407
           I MYS+C+  + A  +F      E++++TW  M+ G+     + ++  LF EM     GV
Sbjct: 415 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 474

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH-LLLWNSLVEMYARSGKVPEA 466
            PN  TI+ IL  CA +A ++ GK+ H Y+LR   ++     + N L+ MY++ G V  A
Sbjct: 475 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 534

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + VFD MS++  +++TS++ GYG+ G G  AL +F++M K    PD +T + VL ACSH 
Sbjct: 535 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 594

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G+V +G   F+ M++ YG+ P+ EH+A  +DL  R G L+KA + +  MP  PT+ +W  
Sbjct: 595 GMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVA 654

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           LL AC++H N  + E A  KL+E   EN G Y LI+N+YA  G W  +A++R  M+  G+
Sbjct: 655 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 714

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIV 706
           +K PGC+WV      + F V D S+  + +IY LL  L + +K  GYV +  F   +   
Sbjct: 715 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDE 774

Query: 707 EE 708
           EE
Sbjct: 775 EE 776



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 158/594 (26%), Positives = 271/594 (45%), Gaps = 107/594 (18%)

Query: 104 GLEKNPVLVPK-----LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
            L   P + P+     +V  Y +    + A  ++E       + WNLLI  +++ G    
Sbjct: 41  ALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDS 100

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALV 216
           A+ V  +M     R D+FT P VLKACGE+     G   H  I  C+  E ++F+ NALV
Sbjct: 101 AINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLI-CCNGFESNVFICNALV 159

Query: 217 SMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           +MY + G ++ A  +FD++ +R   D +SWN+++SA+        A  LF +M       
Sbjct: 160 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT------ 213

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                                  L+   +      D ++ V  L AC  + A+   KE+H
Sbjct: 214 -----------------------LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVH 250

Query: 334 GSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH--- 388
           G+A+R   G + +  V NALI  Y++C  + +A  +F M   K +++WN+M++GY+    
Sbjct: 251 GNAIRN--GTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 308

Query: 389 -----------------LD---------------CAEESAFLFREMFRSGVEPNYVTIAS 416
                            LD               C+ E+  +FR+M  SG  PN VTI S
Sbjct: 309 FKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIIS 368

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMF---------NEHLLLWNSLVEMYARSGKVPEAK 467
           +L  CA +     G E H Y L+  +          +E L+++N+L++MY++      A+
Sbjct: 369 VLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 428

Query: 468 SVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ--IKPDHVTMVAVLSAC 523
           S+FD   +  R+ VT+T +I G+   G+   ALKLF EM      + P+  T+  +L AC
Sbjct: 429 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 488

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           +H   +  G KQ       +  +    +F   C++++Y + G ++ A+ +   M    ++
Sbjct: 489 AHLAAIRIG-KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSA 546

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETR-----PENSGYYVLIANMYAATGC 630
             W +++    +H   G G  A +   + R     P++  + V+   +YA + C
Sbjct: 547 ISWTSMMTGYGMH---GRGSEALDIFDKMRKAGFVPDDITFLVV---LYACSHC 594


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/605 (34%), Positives = 339/605 (56%), Gaps = 12/605 (1%)

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV---ENSNIRYPLPWNLLISLYVRD 153
           HA  +  GL      + KL+        ++   + V   E       L WN ++      
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID--ACHEWSLFV 211
                 L +Y +M S     + +T+P +LK+C +    + GR +H+ +    C E   + 
Sbjct: 62  SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGC-ELDRYA 120

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
           H +L+SMY + G+++ AR++FD   +RD VS   +I+ YAS+G  + A ++F  + E   
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITER-- 178

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             +V++WN +  G +    ++  LEL   M       D    V  L AC+  G+++LG+E
Sbjct: 179 --DVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGRE 236

Query: 332 IHGSAV-RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           IH        +G    + NA I +YS+C D+  A  LF+  + K +++WN+++ GYTH++
Sbjct: 237 IHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMN 296

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLL 449
             +E+  LF+EM RSG  PN VT+ S+LP CA +  +  G+  H YI +R         L
Sbjct: 297 LYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSAL 356

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
             SL++MYA+ G +  A  VF+ M  +   ++ ++I G+ + G    A  LF  M KN I
Sbjct: 357 RTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGI 416

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +PD +T+V +LSACSHSGL+  G+  F+ +T  Y I P+LEH+ CM+DL G AGL  +A+
Sbjct: 417 EPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAE 476

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           EII  MP  P   +W +LL AC++H N  + E  A+KL+E  PENSG YVL++N+YA  G
Sbjct: 477 EIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAG 536

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W+ +A++R  +   G++K+PGC+ ++  +V   F++ D  + Q++EIY +L  +  L++
Sbjct: 537 RWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLE 596

Query: 690 DAGYV 694
           +AG+V
Sbjct: 597 EAGFV 601



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 229/514 (44%), Gaps = 75/514 (14%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L+  A   +L    E +  +R+ +  H     +F  ++  C K K   +G+Q+HA  + L
Sbjct: 55  LRGLASSSDLVSPLEMY--VRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKL 112

Query: 104 GLE-------------------------------KNPVLVPKLVTFYASFSLYNNACFLV 132
           G E                               ++ V    L+T YAS     +A  + 
Sbjct: 113 GCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVF 172

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +    R  + WN +I+ YV +  Y EAL ++K+M    +R D  T  SVL AC +   ++
Sbjct: 173 DXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIE 232

Query: 193 FGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
            GR +H+ +D  H +  SL + NA + +Y K G V++A  LF+ +  +D VSWNT+I  Y
Sbjct: 233 LGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGY 292

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
               L+KEA  LF EM   G   N +T  ++                             
Sbjct: 293 THMNLYKEALLLFQEMLRSGESPNDVTMLSV----------------------------- 323

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYILF 368
                 L AC+H+GA+ +G+ IH    +   G      +R +LI MY++C D+  A+ +F
Sbjct: 324 ------LPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVF 377

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                KS+ +WN+M+ G+     A  +  LF  M ++G+EP+ +T+  +L  C+    L 
Sbjct: 378 NSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLD 437

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAG 487
            G+     + +       L  +  ++++   +G   EA+ +  +M    D V + SL+  
Sbjct: 438 LGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKA 497

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             + G   +A    +++   +I+P++     +LS
Sbjct: 498 CKMHGNLELAESFAQKL--MEIEPENSGSYVLLS 529


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/697 (34%), Positives = 351/697 (50%), Gaps = 74/697 (10%)

Query: 74  LDSFAHI--IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           +DS+ ++  +  C K K LA GKQ+H   +  G++ N  +   L+  YA     N A  L
Sbjct: 26  VDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQL 85

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +  + +  + WN++IS Y   G   EA  ++  MQ  R+  D FT+ S+L AC     +
Sbjct: 86  FDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVL 145

Query: 192 DFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           ++GR +H   ++A       V NAL+SMY K G V  ARR+FD M  RD VSW T+  AY
Sbjct: 146 NWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 205

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC------------------------- 285
           A  G  +E+ + +  M +E V  + IT+  +   C                         
Sbjct: 206 AESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDV 265

Query: 286 ----------LRTGNFKG---VLELLS----------------------------RMRTQ 304
                     ++ G FK    V E LS                            RM  +
Sbjct: 266 RVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEE 325

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLR 362
               D       L AC+  G L  GKEIH  A +   G   +VR  NALI MYS+   ++
Sbjct: 326 GVAPDRATYTTVLSACARPGGLARGKEIHARAAKD--GLVSDVRFGNALINMYSKAGSMK 383

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
            A  +F    ++ +++W ++L  Y   D   ES   F++M + GV+ N +T   +L  C+
Sbjct: 384 DARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACS 443

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
               L+ GKE H  +++  +  + L + N+L+ MY + G V +A  VF+ MS RD VT+ 
Sbjct: 444 NPVALKWGKEIHAEVVKAGLLAD-LAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWN 502

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           +LI G G  G G  AL+ +E M    ++P+  T V VLSAC    LV EG++QF  M+  
Sbjct: 503 TLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKD 562

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602
           YGI P  +H+ACMVD+  RAG L +A+++I  +P  P++AMW  LL AC+IH N  IGE 
Sbjct: 563 YGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGER 622

Query: 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFS 662
           AAE  L+  P+N+G YV ++ +YAA G W  +AK+R  M++ GV+K PG +W++      
Sbjct: 623 AAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVH 682

Query: 663 PFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            F+  D S+ + QEIY  L  L + MK  GYV    F
Sbjct: 683 SFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRF 719



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 217/439 (49%), Gaps = 40/439 (9%)

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLF 210
           +DG+YA A  V + +  +  + D++ Y  +L++C +  D+  G+ VH  I  C  + +++
Sbjct: 6   KDGWYAPAD-VLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVY 64

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + N L+ +Y   G V+ AR+LFDK   +  VSWN MIS YA +GL +EAF LF  MQ+E 
Sbjct: 65  ITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQER 124

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           +E +  T+ +I                                   L ACS    L  G+
Sbjct: 125 LEPDKFTFVSI-----------------------------------LSACSSPAVLNWGR 149

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           EIH   +         V NALI+MY++C  +R A  +F   A +  ++W ++   Y    
Sbjct: 150 EIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 209

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             EES   +  M +  V P+ +T  ++L  C  +A L+ GK+ H +I+  + ++  + + 
Sbjct: 210 YGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIV-ESEYHSDVRVS 268

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            +L +MY + G   +A+ VF+ +S RD + + ++I G+   G+   A   F  M +  + 
Sbjct: 269 TALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVA 328

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD  T   VLSAC+  G +  G K+     +  G+   +     ++++Y +AG +  A++
Sbjct: 329 PDRATYTTVLSACARPGGLARG-KEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQ 387

Query: 571 IITKMPYTPTSAMWATLLG 589
           +  +MP     + W TLLG
Sbjct: 388 VFDRMPKRDVVS-WTTLLG 405


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/685 (31%), Positives = 355/685 (51%), Gaps = 60/685 (8%)

Query: 25  KWKQPINNEHIM-------RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSF 77
           +W   I  E I        RI+    +   A RG   +A + F ++++     D V  + 
Sbjct: 260 RWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCV--TV 317

Query: 78  AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI 137
           A ++  C  V A  +GKQLH+  I +G+  + ++   L+  Y         CF +E ++ 
Sbjct: 318 ASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVK-------CFDIETAHE 370

Query: 138 RY-------PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
            +        + WN+++  Y + G  +E+  ++ QMQ   +  + +TYPS+L+ C  +  
Sbjct: 371 YFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGA 430

Query: 191 VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +D G  +H+  I +  +++++V + L+ MY K G++D AR +  ++ E D          
Sbjct: 431 LDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREED---------- 480

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
                                    V++W  +  G  +   F   L+L   M  Q    D
Sbjct: 481 -------------------------VVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSD 515

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           ++     + AC+ + AL  G++IH  +    Y E  ++ NAL+++Y+RC   + AY+ F+
Sbjct: 516 NIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFE 575

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
               K  I+WN+++SG+      EE+  +F +M ++GVE N  T  S +   A  AN++ 
Sbjct: 576 KIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQ 635

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK+ H  +++   ++      N L+ +Y++ G + +AK  F  M  ++ V++ ++I GY 
Sbjct: 636 GKQIHAMMIKTG-YDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYS 694

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G  A+ LFEEM +  + P+HVT V VLSACSH GLV EG   F  M+  +G+ P+ 
Sbjct: 695 QHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKP 754

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH+ C+VDL GRA LL  A+E I +MP  P + +W TLL AC +H+N  IGE+AA  LLE
Sbjct: 755 EHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLE 814

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             PE+S  YVL++NMYA +G WD   + R  M+D GV+K PG +W++  N    F V D 
Sbjct: 815 LEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDR 874

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYV 694
            +  A++IY  +  L E   + GYV
Sbjct: 875 LHPLAEQIYEYIDDLNERAGEIGYV 899



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/498 (27%), Positives = 235/498 (47%), Gaps = 45/498 (9%)

Query: 76  SFAHIIFCCGKVKALAQ-GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +FA ++  C   KA  Q  +Q+HA  I  G   +P++   L+  Y+     + A  + E 
Sbjct: 113 TFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFER 172

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             ++  + W  +IS   ++G   EA+ ++ QM    +    + + SVL AC ++     G
Sbjct: 173 LFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLG 232

Query: 195 RVVHSCIDACHEWSL----FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             +H  I    +W L    FV NALV++Y ++G +  A ++F KM  RD +S+N++IS  
Sbjct: 233 EQLHGFIV---KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGL 289

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           A +G    A QLF +MQ +               C++                     D 
Sbjct: 290 AQRGFSDRALQLFEKMQLD---------------CMKP--------------------DC 314

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           V     L AC+ VGA   GK++H   ++        +  +L+ +Y +C D+  A+  F  
Sbjct: 315 VTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLT 374

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
           T  ++++ WN ML  Y  L    ES ++F +M   G+ PN  T  SIL  C  +  L  G
Sbjct: 375 TETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLG 434

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           ++ H  +++   F  ++ + + L++MYA+ G++  A+ +   +   D V++T++IAGY  
Sbjct: 435 EQIHTQVIKSG-FQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQ 493

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
                 ALKLF+EM    I+ D++   + +SAC+    + +GQ Q    + I G    L 
Sbjct: 494 HDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQ-QIHAQSYISGYSEDLS 552

Query: 551 HFACMVDLYGRAGLLNKA 568
               +V LY R G    A
Sbjct: 553 IGNALVSLYARCGRAQDA 570



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/519 (26%), Positives = 246/519 (47%), Gaps = 42/519 (8%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+ ++  C K++    G+QLH   +  GL     +   LVT Y+ +     A  +    +
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMH 275

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + +N LIS   + GF   AL ++++MQ   ++ D  T  S+L AC  +     G+ 
Sbjct: 276 RRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ 335

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +HS  I       L +  +L+ +Y K   ++ A   F      + V WN M+ AY   G 
Sbjct: 336 LHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGN 395

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             E++ +F++MQ EG+  N  T+ +I    LRT                           
Sbjct: 396 LSESYWIFLQMQIEGLMPNQYTYPSI----LRT--------------------------- 424

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
               C+ +GAL LG++IH   ++  +     V + LI MY++  +L  A  + +   E+ 
Sbjct: 425 ----CTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREED 480

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W +M++GYT  D   E+  LF+EM   G+  + +  +S +  CA +  L  G++ H 
Sbjct: 481 VVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHA 540

Query: 436 --YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
             YI   + ++E L + N+LV +YAR G+  +A   F+ +  +D +++ +LI+G+   G 
Sbjct: 541 QSYI---SGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGH 597

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              AL++F +MN+  ++ +  T  + +SA +++  + +G KQ   M    G   + E   
Sbjct: 598 CEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQG-KQIHAMMIKTGYDSETEASN 656

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            ++ LY + G +  AK    +MP     +  A + G  Q
Sbjct: 657 VLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQ 695



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 127/520 (24%), Positives = 237/520 (45%), Gaps = 57/520 (10%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN---SNIRYP 140
           C    +L   K+LHA     G +   VL  +L+  Y +    +NA  L ++   SN+ + 
Sbjct: 20  CFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSF- 78

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG------EMMDVDFG 194
             WN +IS  +     ++ L ++  M +  +  D  T+ SVL+AC       ++ +    
Sbjct: 79  --WNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHA 136

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           +++H    +    S  V N L+ +Y K G VD+A+ +F+++  +D+VSW  MIS  +  G
Sbjct: 137 KIIHHGFGS----SPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNG 192

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF +M +  V      ++++                                 
Sbjct: 193 REDEAILLFCQMHKSAVIPTPYVFSSV--------------------------------- 219

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +   KLG+++HG  V+        V NAL+T+YSR  +L  A  +F     +
Sbjct: 220 --LSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRR 277

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             I++NS++SG      ++ +  LF +M    ++P+ VT+AS+L  CA V     GK+ H
Sbjct: 278 DRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLH 337

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            Y+++  M ++ L++  SL+++Y +   +  A   F      + V +  ++  YG  G  
Sbjct: 338 SYVIKMGMSSD-LIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNL 396

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             +  +F +M    + P+  T  ++L  C+  G +  G+   +  T +     Q   + C
Sbjct: 397 SESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGE---QIHTQVIKSGFQFNVYVC 453

Query: 555 --MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
             ++D+Y + G L+ A+ I+ ++      +  A + G  Q
Sbjct: 454 SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQ 493



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 198/431 (45%), Gaps = 48/431 (11%)

Query: 166 MQSRRIRGDNFTYPSVLKAC---GEMMDVD--FGRVVHSCIDACHEWSLFVHNALVSMYG 220
           M+ R IR +  TY  + + C   G ++D      R+  S  D        + + L+ +Y 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDG----EDVLGSRLIDIYL 56

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
             G+VD A +LFD +   +   WN +IS   +K L  +   LF  M  E V  +  T+ +
Sbjct: 57  AHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFAS 116

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA-LKLGKEIHGSAVRG 339
           +                                   L ACS   A  ++ ++IH   +  
Sbjct: 117 V-----------------------------------LRACSGGKAPFQVTEQIHAKIIHH 141

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +G    V N LI +YS+   +  A ++F+    K  ++W +M+SG +     +E+  LF
Sbjct: 142 GFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLF 201

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M +S V P     +S+L  C ++   + G++ H +I++  + +E  +  N+LV +Y+R
Sbjct: 202 CQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC-NALVTLYSR 260

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  A+ +F  M RRD ++Y SLI+G   +G    AL+LFE+M  + +KPD VT+ ++
Sbjct: 261 WGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASL 320

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           LSAC+  G   +G KQ        G+   L     ++DLY +   +  A E       T 
Sbjct: 321 LSACASVGAGYKG-KQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTE-TE 378

Query: 580 TSAMWATLLGA 590
              +W  +L A
Sbjct: 379 NVVLWNVMLVA 389


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/655 (33%), Positives = 353/655 (53%), Gaps = 45/655 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVV---LDSFAHIIFCCGKVKALAQGKQLHACA 100
           LK +A   +L  A   F+R++     HD V   + +F +++  CG    L +GK++H   
Sbjct: 2   LKGYAKSSSLDSALSFFSRMK-----HDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSV 56

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           I  G   N   +  +V  YA     N+A  + +    R  + WN +IS Y ++GF   AL
Sbjct: 57  ITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVAL 116

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMY 219
            +  +M     R D+ T  S+L A  +   +  G  VH   + A  E  + V  ALV MY
Sbjct: 117 MLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMY 176

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G V +AR +FD M  R                                    V++WN
Sbjct: 177 SKCGSVSIARVIFDGMDHR-----------------------------------TVVSWN 201

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           ++  G +++G+ +G + +  +M  +     +V  +  L AC+ +G L+ GK +H    + 
Sbjct: 202 SMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQL 261

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                 +V N+LI+MYS+CK +  A  +FK    K++++WN+M+ GY    C  E+   F
Sbjct: 262 KLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAF 321

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            EM    ++P+  T+ S++P  A ++  +  K  H  ++RR   ++++ +  +LV+MYA+
Sbjct: 322 CEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRR-FLDKNVFVMTALVDMYAK 380

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  A+ +FD+M+ R  +T+ ++I GYG  G G+ +++LF+EM K  IKP+ +T +  
Sbjct: 381 CGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCA 440

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           LSACSHSGLV EG   FE M   YGI P ++H+  MVDL GRAG LN+A + I KMP  P
Sbjct: 441 LSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKP 500

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
              ++  +LGAC+IH+N  +GE AA ++ +  P++ GY+VL+AN+YA    W K+AKVRT
Sbjct: 501 GITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRT 560

Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            M   G++K PGC+ V+ GN    F    TS+ Q+++IY  L  L + ++ AGYV
Sbjct: 561 IMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYV 615



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 19/215 (8%)

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ML GY      + +   F  M    V P       +L LC   ++L+ GKE H  ++   
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            F+ +L     +V MYA+  ++ +A ++FD M  RD V + ++I+GY   G  +VAL L 
Sbjct: 61  -FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHS-----GLVVEG---QKQFERMTSIYGIFPQLEHFA 553
             M++   +PD +T+V++L A + +     G+ V G   +  FE + ++           
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVS---------T 170

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            +VD+Y + G ++ A+ I   M +  T   W +++
Sbjct: 171 ALVDMYSKCGSVSIARVIFDGMDHR-TVVSWNSMI 204


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/652 (34%), Positives = 356/652 (54%), Gaps = 39/652 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +   G+   A   F  +R T  + + V  +FA ++  C     +  G QLH   ++ 
Sbjct: 220 LNGYVKNGDWDNATGVFMEMRRTETNPNSV--TFACVLSVCASEIMINFGSQLHGLVVSS 277

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE +  +   L+  YA      +A  L +       + WN +IS YV++GF  EA C++
Sbjct: 278 GLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLF 337

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            +M S R++ D+ T+ S L    E   +  G+ +H   I       +F+ +AL+ +Y K 
Sbjct: 338 HEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKC 397

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V++AR++FD+    D V    MIS Y   G+   A ++F  + +E             
Sbjct: 398 RDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE------------- 444

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                            RMR     L SV     L AC+ + AL LGKE+HG  ++  +G
Sbjct: 445 -----------------RMRANSVTLASV-----LPACAGLAALTLGKELHGHILKNGHG 482

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V +A++ MY++C  L  A+  F   ++K  + WNSM++  +     EE+  LFR+M
Sbjct: 483 GSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQM 542

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             +G + + V+I++ L  CA +  L +GKE H +++R A F   L   ++L++MY++ G 
Sbjct: 543 GMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGA-FRSDLFAESALIDMYSKCGN 601

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  VFD M  ++EV++ S+IA YG  G  + +L LF  M  + I+PDHVT +A++SA
Sbjct: 602 LDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISA 661

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C H+G V EG   F  MT   GI  ++EH+ACMVDL+GRAG LN+A  +I  MP++P + 
Sbjct: 662 CGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAG 721

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W TLLGAC++H N  + E A+  L +  P+NSGYYVL++N++A  G W+ + K+R+ M+
Sbjct: 722 VWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMK 781

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           + GV+K+PGC+W+D  N    F+  D S+ Q+ +IY LL  L   ++  GYV
Sbjct: 782 ERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIYLLLKNLFLELRKEGYV 833



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 148/542 (27%), Positives = 251/542 (46%), Gaps = 63/542 (11%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           ++ +  + D +      I+  C     L+QG+Q HA  +  G+  N +L  KL+  Y   
Sbjct: 35  LQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC 94

Query: 123 SLYNNACFLVENSNIRYPL------PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
             + +A       NI Y L      PWN +I  +   G +  AL  Y +M       D +
Sbjct: 95  GAFLDA------KNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKY 148

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           T+P V+KACG +  V  GRVVH  I     E  +FV ++L+  Y + G +  AR LFD+M
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             +D V                                    WN +  G ++ G++    
Sbjct: 209 PSKDGV-----------------------------------LWNVMLNGYVKNGDWDNAT 233

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            +   MR  ET  +SV     L  C+    +  G ++HG  V         V N L+ MY
Sbjct: 234 GVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMY 293

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++C  L  A  LF M  +  ++TWN M+SGY      +E++ LF EM  + ++P+ +T +
Sbjct: 294 AKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFS 353

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           S LPL +  A L+ GKE HCYI+R  + +  + L ++L+++Y +   V  A+ +FD  + 
Sbjct: 354 SFLPLLSEGATLRQGKEIHCYIIRNGV-SLDVFLKSALIDIYFKCRDVEMARKIFDQRTP 412

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            D V  T++I+GY + G    AL++F  + + +++ + VT+ +VL AC+    +  G++ 
Sbjct: 413 VDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKE- 471

Query: 536 FERMTSIYG-IFPQLEHFACMV-----DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
                 ++G I       +C V     D+Y + G L+ A +    +     +  W +++ 
Sbjct: 472 ------LHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMIT 524

Query: 590 AC 591
           +C
Sbjct: 525 SC 526


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/643 (35%), Positives = 353/643 (54%), Gaps = 31/643 (4%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASH---DVVLD-------SFAHIIFCCGK 86
           R N L+T K+  G+GN         + R+  A H   D+V +       ++  ++  C  
Sbjct: 18  RTNTLKT-KEGTGKGNDGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLN 76

Query: 87  VKALAQGKQLHACAIALGLE-KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
            K+L   K LHA  I    E ++  L  KLV+ Y        A  + +   ++  + W  
Sbjct: 77  AKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTA 136

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
           +I+ Y R     EAL  + +MQ   I+ ++FT+ S+L AC ++ +V  G      +    
Sbjct: 137 MIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDL-EV-LGEFHDEIVKGGF 194

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           E ++FV N LV MY K G ++ AR LFDKM +RD VSWN MI+ Y   GL ++A +LF E
Sbjct: 195 ESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQE 254

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE--TYLDSVATVIGLGACSHV 323
           + +     +VITWNT+  G  + G+ +  +EL  +M  Q   ++   +A  +  G+    
Sbjct: 255 IPKR----DVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKE- 309

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
            A KL + +    V           NA+I+ +++   +  A  LFK   E ++++WN+M+
Sbjct: 310 -AFKLFQIMPERNVISW--------NAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMI 360

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           +GY+    AE +  LF +M    ++PN  T A +LP CA +A L+ G E H  ++R   F
Sbjct: 361 AGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSG-F 419

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
              +L+ N+LV MYA+ G + +A+ VFD M ++D  + +++I GY I G  + +L+LFE+
Sbjct: 420 QSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQ 479

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M    +KPD VT V VLSAC H+GLV EG++ F+ MT  Y I P +EH+ CM+DL GRAG
Sbjct: 480 MQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAG 539

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
             ++A ++I KMP  P + MW +LL AC+ H N  +GE  A+ L+   P+N   YVL++N
Sbjct: 540 CFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSN 599

Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
           +YAA G WD +  VR  M+D  V+K  GC+W+        FLV
Sbjct: 600 IYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLV 642


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/661 (34%), Positives = 344/661 (52%), Gaps = 55/661 (8%)

Query: 43  TLKDFAGRGNLSKAFEAFTRI--------RITAASHDVVLDSFAHIIFCCGKVKALAQGK 94
           T+  +A  G    AFE F ++        RIT  S   VL++F+          AL  GK
Sbjct: 198 TIGGYADCGRSETAFEIFQKMEQEGVVPNRITYIS---VLNAFS-------SPAALKWGK 247

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
            +H+  +  G E +  +   LV  YA    Y +   + E    R  + WN +I      G
Sbjct: 248 AVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGG 307

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHN 213
           ++ EA  VY QMQ   +  +  TY  +L AC     + +G+ +HS +  A     + V N
Sbjct: 308 YWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQN 367

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           AL+SMY + G +  AR +FDKM+ +D +SW  MI   A  G   EA  ++ EMQ+ GVE 
Sbjct: 368 ALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEP 427

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           N +T+ +I                                   L ACS   AL+ G+ IH
Sbjct: 428 NRVTYTSI-----------------------------------LNACSSPAALEWGRRIH 452

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              V        +V N L+ MYS C  ++ A  +F    ++ I+ +N+M+ GY   +  +
Sbjct: 453 QQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGK 512

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LF  +   G++P+ VT  ++L  CA   +L+  +E H  ++R+  F     + N+L
Sbjct: 513 EALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHT-LVRKGGFFSDTSVGNAL 571

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           V  YA+ G   +A  VF+ M++R+ +++ ++I G    G G+ AL+LFE M    +KPD 
Sbjct: 572 VSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDI 631

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VT V++LSACSH+GL+ EG++ F  M+  + I P +EH+ CMVDL GRAG L++A+ +I 
Sbjct: 632 VTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIK 691

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
            MP+   + +W  LLGAC+IH N  + E AAE  L+   +N+  YV +++MYAA G WD 
Sbjct: 692 TMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDS 751

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
            AK+R  M   GV K PG +W+  G+    F+ +D S+ Q+++IY  L  LT  MK  GY
Sbjct: 752 AAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGY 811

Query: 694 V 694
           V
Sbjct: 812 V 812



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 232/501 (46%), Gaps = 52/501 (10%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI------ 137
           C +VK L  G+Q+H   I          VP   T  A  ++Y     + E   +      
Sbjct: 33  CIEVKDLVAGRQVHQHII------QHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSY 86

Query: 138 --RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN ++  Y++ G+  +AL + +QMQ   +  D  T  S L +C     +++GR
Sbjct: 87  MERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGR 146

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   + A   + + V N +++MY K G ++ AR                         
Sbjct: 147 EIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAR------------------------- 181

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                 ++F +M+++    +V++W    GG    G  +   E+  +M  +    + +  +
Sbjct: 182 ------EVFDKMEKK----SVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYI 231

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L A S   ALK GK +H   +   +     V  AL+ MY++C   +    +F+    +
Sbjct: 232 SVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR 291

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +I WN+M+ G       EE++ ++ +M R GV PN +T   +L  C   A L  GKE H
Sbjct: 292 DLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIH 351

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             +  +A F   + + N+L+ MY+R G + +A+ VFD M R+D +++T++I G    G G
Sbjct: 352 SRVA-KAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFG 410

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL +++EM +  ++P+ VT  ++L+ACS    +  G++  +++    G+         
Sbjct: 411 AEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA-GLATDAHVGNT 469

Query: 555 MVDLYGRAGLLNKAKEIITKM 575
           +V++Y   G +  A+++  +M
Sbjct: 470 LVNMYSMCGSVKDARQVFDRM 490



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 208/437 (47%), Gaps = 45/437 (10%)

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHNALVS 217
           A+ V + +Q +  + ++  Y  +LK C E+ D+  GR VH  I         +  NAL++
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 218 MYGKFGQVDVARRLFDKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           MY + G ++ AR+++ K+  +ER   SWN M+  Y   G  ++A +L  +MQ+ G+  + 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            T                ++  LS                   +C   GAL+ G+EIH  
Sbjct: 127 TT----------------IMSFLS-------------------SCKSPGALEWGREIHFQ 151

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE-E 394
           A++        V N ++ MY++C  +  A  +F    +KS+++W   + GY   DC   E
Sbjct: 152 AMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYA--DCGRSE 209

Query: 395 SAF-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           +AF +F++M + GV PN +T  S+L   +  A L+ GK  H  IL  A       +  +L
Sbjct: 210 TAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRIL-NAGHESDTAVGTAL 268

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           V+MYA+ G   + + VF+ +  RD + + ++I G    G    A +++ +M +  + P+ 
Sbjct: 269 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNK 328

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           +T V +L+AC +S  +  G++   R+    G    +     ++ +Y R G +  A+ +  
Sbjct: 329 ITYVILLNACVNSAALHWGKEIHSRVAKA-GFTSDIGVQNALISMYSRCGSIKDARLVFD 387

Query: 574 KMPYTPTSAMWATLLGA 590
           KM      + W  ++G 
Sbjct: 388 KMVRKDVIS-WTAMIGG 403


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/686 (33%), Positives = 363/686 (52%), Gaps = 58/686 (8%)

Query: 73  VLDSFAHIIFCC--GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           +LDS  H IF C      +L+Q +Q HA  +  GL  +  L  KL++ YA     NN CF
Sbjct: 10  LLDSVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYA-----NNMCF 64

Query: 131 --------LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
                   LV   N+     ++ LI  + +   +  AL  + QM +R +  DN   PS +
Sbjct: 65  ADATLVLDLVPEPNV---FSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAV 121

Query: 183 KACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
           KAC  +  +   R VH        +   FV ++LV MY K  Q+  A R+FD+M E D V
Sbjct: 122 KACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVV 181

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SW+ +++AYA +G   EA +LF EM + GV+ N+I+WN +  G   +G +   + +   M
Sbjct: 182 SWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK-- 359
             +    D       L A   +  L +G  IHG  ++      + V +ALI MY +C   
Sbjct: 242 HLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCT 301

Query: 360 --------DLRH-------AYI--------------LFKMTAEK----SIITWNSMLSGY 386
                    + H       A+I              LF+   ++    ++++W SM++  
Sbjct: 302 SEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACC 361

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
           +      E+  LFREM  +GV+PN VTI  +LP C  +A L HGK  HC+ LRR +  + 
Sbjct: 362 SQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTD- 420

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           + + ++L++MYA+ G++  ++  FD +  ++ V + ++IAGY + G+ + A+++F+ M +
Sbjct: 421 VYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQR 480

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
           +  KPD ++   VLSACS SGL  EG   F  M+S YGI  ++EH+ACMV L  RAG L 
Sbjct: 481 SGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLE 540

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A  +I +MP  P + +W  LL +C++H N  +GE AAEKL E  P N G Y+L++N+YA
Sbjct: 541 QAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYA 600

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           + G W+++ +VR  M++ G+RK PGC+W++  N     L  D S+ Q  +I   L  L+ 
Sbjct: 601 SKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSM 660

Query: 687 LMKDAGYVVKEEFC---SEEEIVEEI 709
            MK  GY  +  F     EE+  E+I
Sbjct: 661 EMKKLGYFPEINFVLQDVEEQDKEQI 686


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/635 (34%), Positives = 353/635 (55%), Gaps = 38/635 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYNNA 128
           +F  +   CG++     G  +H C I LG E N  +   +++ Y        +  +++  
Sbjct: 128 TFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDEL 187

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGE 187
           C+      I   + WN ++S+Y        A+ ++++M     I  D     ++L  CG 
Sbjct: 188 CY----RGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGY 243

Query: 188 MMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
           +     GR VH  C+ +     +FV NALV MY K G+++ A ++F++M  +D V+WN M
Sbjct: 244 LGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAM 303

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           ++ Y+  G +++A  LF +M+EE +E +V+TW+++  G  + G     +++  +M     
Sbjct: 304 VTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRC 363

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY-GEYEN------VRNALITMYSRCK 359
             + V  +  L AC+ VGAL  GKE H  +V+    GE+ +      V NALI MY++CK
Sbjct: 364 RPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCK 423

Query: 360 DLRHAYILFK--MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR--SGVEPNYVTIA 415
            L  A  +F      ++ ++TW  M+ GY     A  +  LF EMF+  + + PN  TI+
Sbjct: 424 SLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTIS 483

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLL-LWNSLVEMYARSGKVPEAKSVFDLMS 474
            +L  CAR+A L+ GK+ H Y+LRR+  +  +L + N L++MY++SG V  A+ VFD MS
Sbjct: 484 CVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS 543

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           +R+ V++TSL+ GYG+ G    A ++F+EM K  +  D +T + VL ACSHSG+      
Sbjct: 544 KRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM------ 597

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
                   +G+ P +EH+ACMVDL GRAG L +A  +I  MP  PT  +W  LL AC+IH
Sbjct: 598 -------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIH 650

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            N  + E+AA+KLLE + +N G Y L++N+YA    W  +A++   M+  G++KIPG +W
Sbjct: 651 SNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSW 710

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
           V        F V D +++Q+Q+IY  L  L + +K
Sbjct: 711 VKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIK 745



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 172/585 (29%), Positives = 272/585 (46%), Gaps = 98/585 (16%)

Query: 86  KVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVE------NSNIR 138
           + K L Q K LH   I  G L  +   V  L+  Y S +   NA  L+E      +S++ 
Sbjct: 33  QCKTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVY 92

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
           +   WN LI   +       AL ++++M++     D++T+P V KACGE+ + + G  +H
Sbjct: 93  W---WNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIH 149

Query: 199 SC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKG 254
            C I    E ++FV NA++SMYGK   V  AR++FD++  R   D+V+WN+++S Y+   
Sbjct: 150 GCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCF 209

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           +   A  LF EM             T+  G L                      D+V  V
Sbjct: 210 VPNVAVSLFREM-------------TVGYGILP---------------------DTVGVV 235

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L  C ++G    G+++HG  VR    E   V NAL+ MY++C  +  A  +F+    K
Sbjct: 236 NILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFK 295

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE-------------------------- 408
            ++TWN+M++GY+     E++  LF +M    +E                          
Sbjct: 296 DVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVF 355

Query: 409 ---------PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH------LLLWNSL 453
                    PN VT+ S+L  CA V  L HGKE HCY ++  +  EH      L + N+L
Sbjct: 356 RQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINAL 415

Query: 454 VEMYARSGKVPEAKSVFDLM--SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK--NQI 509
           ++MYA+   +  A+++FD +    RD VT+T +I GY   G+   AL+LF EM K  N I
Sbjct: 416 IDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCI 475

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKA 568
            P+  T+  VL AC+    +  G++    +     I   +   A C++D+Y ++G ++ A
Sbjct: 476 VPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTA 535

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           + +   M     +  W +LL    +H   G  E A     E R E
Sbjct: 536 QVVFDSMS-KRNAVSWTSLLTGYGMH---GRSEDAFRVFDEMRKE 576


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/612 (33%), Positives = 344/612 (56%), Gaps = 9/612 (1%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWN 144
           K L   + +HA  I  GL      + KL+        ++   + +     I+ P  L WN
Sbjct: 44  KTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWN 103

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
            +   +        AL +Y  M S  +  +++T+P +LK+C +      G+ +H   +  
Sbjct: 104 TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL 163

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
            ++  LFVH +L+S+Y + G+++ AR++FD+   RD VS+  +I  YAS+G  + A +LF
Sbjct: 164 GYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLF 223

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            E+  +    +V++WN +  G   TGN+K  LEL   M       D    V  + AC+  
Sbjct: 224 DEIPVK----DVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQS 279

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           G+++LG+++H       +G    + N+L+ +YS+C +L  A  LF+    K +I+WN+++
Sbjct: 280 GSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLI 339

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
            GYTH++  +E+  LF+EM RSG  PN VT+ SILP CA +  +  G+  H YI +R   
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKS 399

Query: 444 NEHLL-LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
             +   L  SL++MYA+ G +  A  VF+ +  +   ++ ++I G+ + G    A  +F 
Sbjct: 400 ATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFS 459

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M K  I+PD +T V +LSACS SG++  G+  F  MT  Y I P+LEH+ CM+DL G +
Sbjct: 460 RMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHS 519

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           GL  +A+E+I  M   P   +W +LL AC+I  N  +GE  A+ L++  PEN G YVL++
Sbjct: 520 GLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLS 579

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+YA  G W+++AK+R  + D G++K+PGC+ ++  +V   F++ D  + + +EIY +L 
Sbjct: 580 NIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 639

Query: 683 GLTELMKDAGYV 694
            +  L++ AG+V
Sbjct: 640 EMEVLLEKAGFV 651



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 215/476 (45%), Gaps = 86/476 (18%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALG---------------------------LEKN 108
           +F  ++  C K KA  +G+Q+H   + LG                            +++
Sbjct: 136 TFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRS 195

Query: 109 P----VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           P    V    L+  YAS     +A  L +   ++  + WN +IS Y   G Y EAL ++K
Sbjct: 196 PHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M    IR D  T  +V+ AC +   ++ GR VHS ID  H +  +L + N+L+ +Y K 
Sbjct: 256 EMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDD-HGFGSNLKIVNSLMDLYSKC 314

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+++ A  LF+ +L +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  +I 
Sbjct: 315 GELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSI- 373

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH-------GS 335
                                             L AC+H+GA+ +G+ IH        S
Sbjct: 374 ----------------------------------LPACAHLGAIDIGRWIHVYIDKRLKS 399

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           A         ++R +LI MY++C D+  A+ +F     KS+ +WN+M+ G+     A+ +
Sbjct: 400 ATNA-----SSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAA 454

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             +F  M + G+EP+ +T   +L  C+R   L  G+     + +       L  +  +++
Sbjct: 455 FDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMID 514

Query: 456 MYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           +   SG   EA+ + + M    D V + SL+    I+G     ++L E   +N IK
Sbjct: 515 LLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGN----VELGESFAQNLIK 566



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 9/248 (3%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  GN  +A E F  +  T    D    +   ++  C +  ++  G+Q+H+     G  
Sbjct: 241 YAETGNYKEALELFKEMMKTNIRPDE--STMVTVVSACAQSGSIELGRQVHSWIDDHGFG 298

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +V  L+  Y+       AC L E    +  + WN LI  Y     Y EAL ++++M
Sbjct: 299 SNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEM 358

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSMYGK 221
                R ++ T  S+L AC  +  +D GR +H  ID     A +  SL    +L+ MY K
Sbjct: 359 LRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSL--RTSLIDMYAK 416

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A ++F+ +L +   SWN MI  +A  G    AF +F  M++ G+E + IT+  +
Sbjct: 417 CGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGL 476

Query: 282 AGGCLRTG 289
              C R+G
Sbjct: 477 LSACSRSG 484


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 316/537 (58%), Gaps = 15/537 (2%)

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVS 217
           AL  Y  M+   I  D+F  PSVLKAC ++     G+ +H   +       +FV NAL+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY + G +  AR LFDKM ERD VSW+TMI AY +         LF    +     ++++
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYIT---------LFYGFSQR----SIVS 199

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           W  +  G +R  + +    L  RM  +  + + +  +  + +C  VGA++LGK +H   +
Sbjct: 200 WTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYIL 259

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           R  +G    +  AL+ MY +C ++R A  +F     K ++TW +M+S Y   +C + +  
Sbjct: 260 RNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQ 319

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           LF +M  +GV PN +T+ S+L LCA    L  GK FH YI ++ +    ++L  +L++MY
Sbjct: 320 LFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGV-EVDVILKTALIDMY 378

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           A+ G +  A+ +F     RD  T+  ++AGYG+ G G  ALKLF EM    +KP+ +T +
Sbjct: 379 AKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFI 438

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
             L ACSH+GLVVEG+  FE+M   +G+ P++EH+ CMVDL GRAGLL++A ++I  MP 
Sbjct: 439 GALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPV 498

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637
           TP  A+W  +L AC+IH+N+ +GE AA +LL   P+N GY VL++N+YAA   W+ +A +
Sbjct: 499 TPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGM 558

Query: 638 RTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           R  ++D G++K PG + ++   +   F + DT++   ++I  +L  +++ +K+AGY+
Sbjct: 559 RKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYL 615



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/446 (25%), Positives = 194/446 (43%), Gaps = 64/446 (14%)

Query: 57  FEAFTRIRITAASH----DVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           FE+  R  +   ++    D+ +DSF    ++  C ++     GK++H  ++  GL  +  
Sbjct: 86  FESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVF 145

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR--DGFYAEALCVYKQMQS 168
           +V  L+  Y+      +A  L +  + R  + W+ +I  Y+    GF   ++  +  M +
Sbjct: 146 VVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIA 205

Query: 169 RRIR--------------------GDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEW 207
             IR                     ++ T  S++ +CG +  V  G+ +H+ I       
Sbjct: 206 GYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGM 265

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           SL +  ALV MYGK G++  AR +FD M  +D ++W  MISAYA       AFQLFV+M+
Sbjct: 266 SLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMR 325

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           + GV  N +T  ++                                   L  C+  GAL 
Sbjct: 326 DNGVRPNELTMVSL-----------------------------------LSLCAVNGALD 350

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
           +GK  H    +        ++ ALI MY++C D+  A  LF    ++ I TWN M++GY 
Sbjct: 351 MGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYG 410

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                E++  LF EM   GV+PN +T    L  C+    +  GK     ++        +
Sbjct: 411 MHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKV 470

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLM 473
             +  +V++  R+G + EA  + + M
Sbjct: 471 EHYGCMVDLLGRAGLLDEAYKMIESM 496



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 40/310 (12%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  CG V A+  GK+LHA  +  G   +  L   LV  Y       +A  + ++   + 
Sbjct: 238 LIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKD 297

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  +IS Y +      A  ++ QM+   +R +  T  S+L  C     +D G+  H+
Sbjct: 298 VMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHA 357

Query: 200 CIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            ID    E  + +  AL+ MY K G +  A+RLF + ++RD  +WN M++ Y   G  ++
Sbjct: 358 YIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEK 417

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A +LF EM+  GV+ N IT+                                   +  L 
Sbjct: 418 ALKLFTEMETLGVKPNDITF-----------------------------------IGALH 442

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRN--ALITMYSRCKDLRHAYILFK-MTAEKS 375
           ACSH G +  GK +    +   +G    V +   ++ +  R   L  AY + + M    +
Sbjct: 443 ACSHAGLVVEGKGLFEKMIHD-FGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPN 501

Query: 376 IITWNSMLSG 385
           I  W +ML+ 
Sbjct: 502 IAIWGAMLAA 511


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 327/560 (58%), Gaps = 10/560 (1%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           L WN++   +        AL +Y  M S  +  + FT+P +LK+C +      G+ +H  
Sbjct: 41  LIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGH 100

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    +  L+VH +L+SMY + G+++ A+++FD+   RD VS+  +I+ YAS+G  + A
Sbjct: 101 VLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESA 160

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++F E+  +    +V++WN +  G   TGN+K  LEL   M       D       + A
Sbjct: 161 QKMFDEIPIK----DVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSA 216

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+  G+++LG+++H       +G    + NALI +YS+C ++  A  L +  + K +I+W
Sbjct: 217 CAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISW 276

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI-- 437
           N+++ GYTH++  +E+  LF+EM RSG  PN VT+ SILP CA +  +  G+  H YI  
Sbjct: 277 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 336

Query: 438 -LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGR 495
            L+  +      L  SL++MYA+ G +  A  V D  +  R   T+ ++I G+ + G   
Sbjct: 337 KLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRAN 396

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A  +F  M KN I+PD +T V +LSACSHSG++  G+  F  M   Y I P+LEH+ CM
Sbjct: 397 AAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCM 456

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           +DL G +GL  +A+E+I  MP  P   +W +LL AC+IH N  +GE  A+KL++  PEN 
Sbjct: 457 IDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENP 516

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGV-RKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           G YVL++N+YA  G W+++ K+RT + D G+ +K+PGC+ ++  +V   F++ D  + Q 
Sbjct: 517 GSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQN 576

Query: 675 QEIYPLLGGLTELMKDAGYV 694
           +EIY +L  +  L+++AG+V
Sbjct: 577 REIYGMLEEMEVLLEEAGFV 596



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 207/473 (43%), Gaps = 77/473 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K K   +G+Q+H   + LG +                             
Sbjct: 77  TFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRS 136

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+T YAS     +A  + +   I+  + WN +IS Y   G Y +AL ++K
Sbjct: 137 SHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFK 196

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           +M    ++ D  T  +V+ AC +   ++ GR VHS I D     +L + NAL+ +Y K G
Sbjct: 197 EMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCG 256

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +V+ A  L + +  +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  +I  
Sbjct: 257 EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI-- 314

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG- 342
                                            L AC+H+GA+ +G+ IH    +   G 
Sbjct: 315 ---------------------------------LPACAHLGAIDIGRWIHVYIDKKLKGV 341

Query: 343 ---EYENVRNALITMYSRCKDLRHAYILFKMTA-EKSIITWNSMLSGYTHLDCAEESAFL 398
                 ++R +LI MY++C D+  A  +   +A  +S+ TWN+M+ G+     A  +  +
Sbjct: 342 VVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDI 401

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F  M ++G+EP+ +T   +L  C+    L  G+     + +       L  +  ++++  
Sbjct: 402 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLG 461

Query: 459 RSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            SG   EA+ + + M    D V + SL+    I G     L+L E   K  IK
Sbjct: 462 HSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN----LELGESFAKKLIK 510



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 185/382 (48%), Gaps = 20/382 (5%)

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
           F  +  A  +F+ + E + + WN M   +A       A +L+V M   G+  N  T+  +
Sbjct: 22  FDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFL 81

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
              C ++  FK   ++   +      LD       +   +  G L+  +++   +     
Sbjct: 82  LKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
             Y     ALIT Y+    +  A  +F     K +++WN+M+SGY      +++  LF+E
Sbjct: 142 VSY----TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKE 197

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M ++ V+P+  T+A+++  CA+  +++ G++ H +I     F  +L + N+L+++Y++ G
Sbjct: 198 MMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHG-FGSNLKIVNALIDLYSKCG 256

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           +V  A  + + +S +D +++ +LI GY      + AL LF+EM ++   P+ VTM+++L 
Sbjct: 257 EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 316

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHF---------ACMVDLYGRAGLLNKAKEII 572
           AC+H G +  G     R   +Y I  +L+             ++D+Y + G ++ A ++ 
Sbjct: 317 ACAHLGAIDIG-----RWIHVY-IDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVS 370

Query: 573 TKMPYTPTSAMWATLLGACQIH 594
               +  + + W  ++    +H
Sbjct: 371 DSSAFNRSLSTWNAMIFGFAMH 392



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/439 (24%), Positives = 177/439 (40%), Gaps = 84/439 (19%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  GN  KA E F  +  T    D    + A ++  C +  ++  G+Q+H+     G  
Sbjct: 182 YAETGNYKKALELFKEMMKTNVKPDE--STMATVVSACAQSGSIELGRQVHSWINDHGFG 239

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +V  L+  Y+       AC L+E  + +  + WN LI  Y     Y EAL ++++M
Sbjct: 240 SNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEM 299

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNA------LVSMYG 220
                  ++ T  S+L AC  +  +D GR +H  ID   +  + V NA      L+ MY 
Sbjct: 300 LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLK-GVVVTNASSLRTSLIDMYA 358

Query: 221 KFGQVDVARRLFD-KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
           K G +D A ++ D     R   +WN MI  +A  G    AF +F  M++ G+E + IT  
Sbjct: 359 KCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDIT-- 416

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
                      F G+                      L ACSH G L LG+         
Sbjct: 417 -----------FVGL----------------------LSACSHSGMLDLGR--------- 434

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                 N+  ++   Y+    L H               +  M+    H    +E+  + 
Sbjct: 435 ------NIFRSMRQDYNITPKLEH---------------YGCMIDLLGHSGLFKEAEEMI 473

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN--EHLLLWNSLVEMY 457
             M    +EP+ V   S+L  C    NL+ G+ F   +++    N   ++LL N    +Y
Sbjct: 474 NTM---PMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSN----IY 526

Query: 458 ARSGKVPEAKSVFDLMSRR 476
           A +GK  E   +  L++ +
Sbjct: 527 ATAGKWNEVXKIRTLLNDK 545


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/615 (33%), Positives = 349/615 (56%), Gaps = 15/615 (2%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWN 144
           K L   + +HA  I  GL      + KL+ F      ++   + +     I+ P  L WN
Sbjct: 13  KTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWN 72

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
            +   +        AL +Y  M S  +  + +T+P +LK+C +      G+ +H   +  
Sbjct: 73  TMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKL 132

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
            ++  L+VH +L+SMY + G+++ AR++FD+   RD VS+  +I+ YASKG    A ++F
Sbjct: 133 GYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMF 192

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            E+  +    +V++WN +  G   TGN K  LEL   M       D    V  + AC+  
Sbjct: 193 DEIPIK----DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQS 248

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
            +++LG+++H       +G    + NALI +Y +C ++  A  LF+  + K +I+WN+++
Sbjct: 249 ASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLI 308

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR--- 440
            GYTH++  +E+  LF+EM RSG  PN VT+ SILP CA +  ++ G+  H YI +R   
Sbjct: 309 GGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKG 368

Query: 441 -AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
            A  + H     SL++MYA+ G +  A+ VFD +  R   ++ ++I G+ + G    A  
Sbjct: 369 VANASSHR---TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 425

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           +F  M KN+I+PD +T V +LSACSHSG++  G+  F  M   Y I P+LEH+ CM+DL 
Sbjct: 426 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLL 485

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
           G +GL  +A+E+I  M   P   +W +LL AC+++ N  +GE  A+ L++  P+N G YV
Sbjct: 486 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYV 545

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++N+YA  G W+++AK+R  + D G++K+PGC+ ++  +V   F++ D  + + +EIY 
Sbjct: 546 LLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 680 LLGGLTELMKDAGYV 694
           +L  +  L+++AG+V
Sbjct: 606 MLEEMEVLLEEAGFV 620



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 133/532 (25%), Positives = 226/532 (42%), Gaps = 109/532 (20%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K KA  +G+Q+H   + LG +                             
Sbjct: 105 TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 164

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+T YAS     +A  + +   I+  + WN +IS Y   G   EAL ++K
Sbjct: 165 SHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFK 224

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M    +R D  T  SV+ AC +   ++ GR VHS ID  H +  +L + NAL+ +Y K 
Sbjct: 225 EMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKC 283

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+V+ A  LF+ +  +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  +I 
Sbjct: 284 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI- 342

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH---GSAVRG 339
                                             L AC+H+GA+++G+ IH      ++G
Sbjct: 343 ----------------------------------LPACAHLGAIEIGRWIHVYINKRLKG 368

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                 + R +LI MY++C D+  A  +F     +S+ +WN+M+ G+     A  +  +F
Sbjct: 369 V-ANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIF 427

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
             M ++ +EP+ +T   +L  C+    L  G+                 ++ S+ E Y  
Sbjct: 428 SRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH----------------IFRSMKEDYKI 471

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
           + K+     + DL+               G+  E        E +N  +++PD V   ++
Sbjct: 472 TPKLEHYGCMIDLLGHS------------GLFKEAE------EMINTMEMEPDGVIWCSL 513

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           L AC     V  G+   + +  I    P    +  + ++Y  AG  N+  +I
Sbjct: 514 LKACKMYANVELGESYAQNLIKIEPKNPG--SYVLLSNIYATAGRWNEVAKI 563



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 17/255 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  GN  +A E F  +  T    D    +   ++  C +  ++  G+Q+H+     
Sbjct: 207 ISGYAETGNNKEALELFKEMMKTNVRPDE--STMVSVVSACAQSASIELGRQVHSWIDDH 264

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   N  +V  L+  Y        AC L E  + +  + WN LI  Y     Y EAL ++
Sbjct: 265 GFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLF 324

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID---------ACHEWSLFVHNA 214
           ++M       ++ T  S+L AC  +  ++ GR +H  I+         + H  S      
Sbjct: 325 QEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS------ 378

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+ MY K G ++ A+++FD +L R   SWN MI  +A  G    AF +F  M++  +E +
Sbjct: 379 LIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 438

Query: 275 VITWNTIAGGCLRTG 289
            IT+  +   C  +G
Sbjct: 439 DITFVGLLSACSHSG 453


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/609 (33%), Positives = 347/609 (56%), Gaps = 15/609 (2%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWNLLISLY 150
           + +HA  I  GL      + KL+ F      ++   + +     I+ P  L WN +   +
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSL 209
                   AL +Y  M S  +  + +T+P +LK+C +      G+ +H   +   ++  L
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           +VH +L+SMY + G+++ AR++FD+   RD VS+  +I+ YASKG    A ++F E+  +
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 183

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
               +V++WN +  G   TGN K  LEL   M       D    V  + AC+   +++LG
Sbjct: 184 ----DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 239

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +++H       +G    + NALI +Y +C ++  A  LF+  + K +I+WN+++ GYTH+
Sbjct: 240 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 299

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR----AMFNE 445
           +  +E+  LF+EM RSG  PN VT+ SILP CA +  ++ G+  H YI +R    A  + 
Sbjct: 300 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 359

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           H     SL++MYA+ G +  A+ VFD +  R   ++ ++I G+ + G    A  +F  M 
Sbjct: 360 HR---TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 416

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           KN+I+PD +T V +LSACSHSG++  G+  F  M   Y I P+LEH+ CM+DL G +GL 
Sbjct: 417 KNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLF 476

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
            +A+E+I  M   P   +W +LL AC++H N  +GE  A+ L++  P+N G YVL++N+Y
Sbjct: 477 KEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIY 536

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           A  G W+++AK+R  + D G++K+PGC+ ++  +V   F++ D  + + +EIY +L  + 
Sbjct: 537 ATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEME 596

Query: 686 ELMKDAGYV 694
            L+++AG+V
Sbjct: 597 VLLEEAGFV 605



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 227/532 (42%), Gaps = 109/532 (20%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K KA  +G+Q+H   + LG +                             
Sbjct: 90  TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 149

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+T YAS     +A  + +   I+  + WN +IS Y   G   EAL ++K
Sbjct: 150 SHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFK 209

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M    +R D  T  SV+ AC +   ++ GR VHS ID  H +  +L + NAL+ +Y K 
Sbjct: 210 EMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKC 268

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+V+ A  LF+ +  +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  +I 
Sbjct: 269 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI- 327

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH---GSAVRG 339
                                             L AC+H+GA+++G+ IH      ++G
Sbjct: 328 ----------------------------------LPACAHLGAIEIGRWIHVYINKRLKG 353

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                 + R +LI MY++C D+  A  +F     +S+ +WN+M+ G+     A  +  +F
Sbjct: 354 VANASSH-RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIF 412

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
             M ++ +EP+ +T   +L  C+    L  G+                 ++ S+ E Y  
Sbjct: 413 SRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH----------------IFRSMKEDYKI 456

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
           + K+     + DL+               G+  E        E +N  +++PD V   ++
Sbjct: 457 TPKLEHYGCMIDLLGHS------------GLFKEAE------EMINTMEMEPDGVIWCSL 498

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           L AC   G V  G+   + +  I    P    +  + ++Y  AG  N+  +I
Sbjct: 499 LKACKMHGNVELGESYAQNLIKIEPKNPG--SYVLLSNIYATAGRWNEVAKI 548



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 17/255 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  GN  +A E F  +  T    D    +   ++  C +  ++  G+Q+H+     
Sbjct: 192 ISGYAETGNNKEALELFKEMMKTNVRPDE--STMVSVVSACAQSASIELGRQVHSWIDDH 249

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   N  +V  L+  Y        AC L E  + +  + WN LI  Y     Y EAL ++
Sbjct: 250 GFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLF 309

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID---------ACHEWSLFVHNA 214
           ++M       ++ T  S+L AC  +  ++ GR +H  I+         + H  S      
Sbjct: 310 QEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS------ 363

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+ MY K G ++ A+++FD +L R   SWN MI  +A  G    AF +F  M++  +E +
Sbjct: 364 LIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 423

Query: 275 VITWNTIAGGCLRTG 289
            IT+  +   C  +G
Sbjct: 424 DITFVGLLSACSHSG 438


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/662 (32%), Positives = 348/662 (52%), Gaps = 75/662 (11%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYNNAC 129
           F+ I           Q  +LH+  I LGL  + +   KL+  YA       SFS++    
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR--- 72

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            L   SN  Y   WN +I     +G ++EAL +Y + Q  R++ D +T+PSV+ AC  ++
Sbjct: 73  -LASPSNNVYL--WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           D +  + +H   +D      L++ NAL+ MY +F  +D AR++F++M  RD VSWN++IS
Sbjct: 130 DFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLIS 189

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            Y + G W EA +++ +                        + K  +E++++ +     +
Sbjct: 190 GYNANGYWNEALEIYYQ------------------------SIKLFMEMVNQFKPDLLTI 225

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLR------ 362
            S+     L AC H+G L+ GK +H   +   Y       N LI MY++C +L       
Sbjct: 226 TSI-----LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 280

Query: 363 ---------------HAYI----------LFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
                          + YI          +F+    + IITWN++++   H +       
Sbjct: 281 SGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLR 340

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           +   M   GV P+  T+ SILP+C+ +A  + GKE H  I +  + ++ + + N L+EMY
Sbjct: 341 MISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD-VPVGNVLIEMY 399

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           ++ G +  +  VF LM  +D VT+T+LI+  G+ GEG+ A++ F EM    I PDHV  V
Sbjct: 400 SKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFV 459

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
           A++ ACSHSGLV EG   F RM   Y I P++EH+AC+VDL  R+ LL+KA++ I  MP 
Sbjct: 460 AIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPL 519

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637
            P S++W  LL AC++  +T I E  +E+++E  P+++GYYVL++N+YAA G WD++  +
Sbjct: 520 KPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSI 579

Query: 638 RTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKE 697
           R  ++  G++K PGC+W++  N    F        Q +E+  LLG L  LM   GY+   
Sbjct: 580 RKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANL 639

Query: 698 EF 699
           +F
Sbjct: 640 QF 641



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 244/505 (48%), Gaps = 26/505 (5%)

Query: 28  QPINNEHIMRINLLETLKDFAGRGNLSKAFEAFT---RIRITAASHDVVLDSFAHIIFCC 84
            P NN ++        ++     G  S+A   ++   RIR+   ++     +F  +I  C
Sbjct: 75  SPSNNVYLWN----SIIRALTHNGLFSEALSLYSETQRIRLQPDTY-----TFPSVINAC 125

Query: 85  GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWN 144
             +      K +H   + +G   +  +   L+  Y  F+  + A  + E   +R  + WN
Sbjct: 126 AGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWN 185

Query: 145 LLISLYVRDGFYAEALCVYKQM------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
            LIS Y  +G++ EAL +Y Q          + + D  T  S+L+ACG + D++FG+ VH
Sbjct: 186 SLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVH 245

Query: 199 S-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
              I + +E      N L++MY K G +  ++ +F  M  +D+VSWN+MI+ Y   G   
Sbjct: 246 DYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMG 305

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           ++ ++F  M+      ++ITWNTI   C+ + +    L ++SRMRT+    D    +  L
Sbjct: 306 DSLKVFENMKAR----DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSIL 361

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
             CS + A + GKEIHG   +        V N LI MYS+C  LR+++ +FK+   K ++
Sbjct: 362 PVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVV 421

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           TW +++S        +++   F EM  +G+ P++V   +I+  C+    ++ G  +   +
Sbjct: 422 TWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRM 481

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKS-VFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            +       +  +  +V++ +RS  + +A+  +  +  + D   + +L++   + G+  +
Sbjct: 482 KKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEI 541

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLS 521
           A ++ E +   ++ PD      ++S
Sbjct: 542 AERVSERI--IELNPDDTGYYVLVS 564


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/686 (33%), Positives = 362/686 (52%), Gaps = 58/686 (8%)

Query: 73  VLDSFAHIIFCC--GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           +LDS  H I  C      +L+Q +Q HA  +  GL  +  L  KL++ YA     NN CF
Sbjct: 10  LLDSVQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYA-----NNMCF 64

Query: 131 --------LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
                   LV   N+     ++ LI  + +   +  AL  + QM +R +  DN   PS +
Sbjct: 65  ADATLVLDLVPEPNV---FSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAV 121

Query: 183 KACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
           KAC  +  +   R VH        +   FV ++LV MY K  Q+  A R+FD+M E D V
Sbjct: 122 KACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVV 181

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SW+ +++AYA +G   EA +LF EM + GV+ N+I+WN +  G   +G +   + +   M
Sbjct: 182 SWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK-- 359
             +    D       L A   +  L +G  IHG  ++      + V +ALI MY +C   
Sbjct: 242 HLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCT 301

Query: 360 --------DLRH-------AYI--------------LFKMTAEK----SIITWNSMLSGY 386
                    + H       A+I              LF+   ++    ++++W SM++  
Sbjct: 302 SEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACC 361

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
           +      E+  LFREM  +GV+PN VTI  +LP C  +A L HGK  HC+ LRR +  + 
Sbjct: 362 SQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTD- 420

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           + + ++L++MYA+ G++  ++  FD +  ++ V + ++IAGY + G+ + A+++F+ M +
Sbjct: 421 VYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQR 480

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
           +  KPD ++   VLSACS SGL  EG   F  M+S YGI  ++EH+ACMV L  RAG L 
Sbjct: 481 SGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLE 540

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A  +I +MP  P + +W  LL +C++H N  +GE AAEKL E  P N G Y+L++N+YA
Sbjct: 541 QAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYA 600

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           + G W+++ +VR  M++ G+RK PGC+W++  N     L  D S+ Q  +I   L  L+ 
Sbjct: 601 SKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSM 660

Query: 687 LMKDAGYVVKEEFC---SEEEIVEEI 709
            MK  GY  +  F     EE+  E+I
Sbjct: 661 EMKKLGYFPEINFVLQDVEEQDKEQI 686


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/621 (35%), Positives = 344/621 (55%), Gaps = 26/621 (4%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---------SFSLYNNACFLVENSN 136
           K +++   KQ+HA  I  GL      + KL+ F A         + SL+N+    +E  N
Sbjct: 38  KCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNS----IEEPN 93

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           +     WN +I         A AL  + +M    +  +++T+P +LK+C ++     G+ 
Sbjct: 94  L---FIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQ 150

Query: 197 VHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H+ +      S +F+H +L++MY + G+++ A+ +FD+   RDA+S+  +I+ YA  G 
Sbjct: 151 IHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGY 210

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
              A QLF EM  +    +V++WN +  G  + G  K  L L   MR      +    V 
Sbjct: 211 MDRARQLFDEMPVK----DVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVS 266

Query: 316 GLGACSHVGALKLGKEIHG-SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
            L AC+   AL LG  +      RG     + V NALI MYS+C DL+ A  LF    E+
Sbjct: 267 VLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV-NALIDMYSKCGDLQTARELFDDMLER 325

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +I+WN M+ GYTH+   +E+  LFREM  SGVEP  +T  SILP CA +  +  GK  H
Sbjct: 326 DVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIH 385

Query: 435 CYILRRAMFNEHLLLWNSL-VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
            YI +   FN      ++  +++YA+ G +  A+ VFD M  +   ++ ++I G  + G+
Sbjct: 386 AYINKN--FNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQ 443

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A +LF +M+ + I+P+ +T V +LSAC H+GLV  GQ+ F  M   Y I P+ +H+ 
Sbjct: 444 ADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYG 503

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CM+DL GRAGL  +A+ ++  M   P  A+W +LLGAC+ H    +GE  AE+L E  P+
Sbjct: 504 CMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPD 563

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N G YVL++N+YA  G WD +A++RT + D G++K+PGC  ++  NV   FLV D  + Q
Sbjct: 564 NPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQ 623

Query: 674 AQEIYPLLGGLTELMKDAGYV 694
           +++IY +L  + E +K  G+V
Sbjct: 624 SEDIYRMLEEVDEQLKVFGFV 644



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/481 (27%), Positives = 211/481 (43%), Gaps = 74/481 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C K+ +  +GKQ+HA  + LG   +  +   L+  YA     NNA  + + S
Sbjct: 131 TFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQS 190

Query: 136 NIR-----------YPL--------------------PWNLLISLYVRDGFYAEALCVYK 164
           N R           Y L                     WN +I+ Y + G   EAL +++
Sbjct: 191 NFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFE 250

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA---CHEWSLFVHNALVSMYGK 221
            M+   +  +  T  SVL AC +   +D G  + S I+    C    L   NAL+ MY K
Sbjct: 251 DMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV--NALIDMYSK 308

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  AR LFD MLERD +SWN MI  Y     +KEA  LF EM   GVE   IT+ +I
Sbjct: 309 CGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSI 368

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L +C+H+GA+ LGK IH    +   
Sbjct: 369 -----------------------------------LPSCAHLGAIDLGKWIHAYINKNFN 393

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               ++  +LI +Y++C ++  A  +F     KS+ +WN+M+ G      A+++  LF +
Sbjct: 394 SVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSK 453

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   G+EPN +T   IL  C     +  G++F   +++    +     +  ++++  R+G
Sbjct: 454 MSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAG 513

Query: 462 KVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
              EA+S+   M  + D   + SL+     +  GRV L         +++PD+     +L
Sbjct: 514 LFEEAESLLQNMEVKPDGAIWGSLLG--ACRDHGRVELGELVAERLFELEPDNPGAYVLL 571

Query: 521 S 521
           S
Sbjct: 572 S 572


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/652 (32%), Positives = 348/652 (53%), Gaps = 27/652 (4%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL---VENSNIRYP 140
           CG++ +   G   H      G E N  +   LV  Y+      +A  +   +    I   
Sbjct: 159 CGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDV 218

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQM------QSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           + WN +++ +V+      AL ++ +M      ++   R D  +  ++L AC  +  +   
Sbjct: 219 ISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQT 278

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + +HS  I        FV NAL+  Y K G +  A  +F+ M  +D VSWN M++ Y   
Sbjct: 279 KEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQS 338

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G +  AF+LF  M++E + ++VITW+ +  G  + G  +  L+   +M    +  +SV  
Sbjct: 339 GKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTI 398

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN------------VRNALITMYSRCKDL 361
           +  L AC+ +GAL  G E H  +++ C    +N            V NALI MYS+C+  
Sbjct: 399 ISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSF 458

Query: 362 RHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRS--GVEPNYVTIASI 417
           + A  +F      E++++TW  M+ GY     + ++  LF EM      V PN  TI+ I
Sbjct: 459 KAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCI 518

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHL-LLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           L  CA +++L+ GK+ H Y+ R   +   +  + N L++MY++ G V  A++VFD M +R
Sbjct: 519 LMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKR 578

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           +EV++TS+++GYG+ G G+ AL +F++M K    PD ++ + +L ACSHSG+V +G   F
Sbjct: 579 NEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYF 638

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           + M S YG+    +H+AC++DL  R+G L+KA + I +MP  P++A+W  LL AC++H N
Sbjct: 639 DIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSN 698

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             + E+A  KL+  + EN G Y LI+N+YA    W  +A++R  M+  G++K PGC+WV 
Sbjct: 699 VELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
                + F V D S+  + EIY LL  L   +K  GYV +  F   +   EE
Sbjct: 759 GKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEE 810



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 165/601 (27%), Positives = 270/601 (44%), Gaps = 112/601 (18%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP-----VLVPKL---------- 115
           DV    FA ++  C  V  +   +Q+H   IA GL   P     V +P L          
Sbjct: 28  DVSPTHFASLLKECRSVNTV---RQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKS 84

Query: 116 -----VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
                V  Y +    ++A  ++E       + WNLL+  ++ +G    A+ V  +M    
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVA 228
            + D+FT P  LKACGE+     G   H  I  C+  E ++FV NALV+MY + G ++ A
Sbjct: 145 TKPDHFTLPYALKACGELPSYRSGSAFHGLI-CCNGFESNVFVCNALVAMYSRSGSLEDA 203

Query: 229 RRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             +FD++  +   D +SWN++++A+      + A  LF EM             TI    
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEM------------TTI---- 247

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                   V E  +  R+     D ++ V  L AC+ + AL   KEIH  A+R       
Sbjct: 248 --------VHEKATNERS-----DIISIVNILPACASLKALPQTKEIHSYAIRNGTFADA 294

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH----------------- 388
            V NALI  Y++C  ++ A  +F +   K +++WN+M++GYT                  
Sbjct: 295 FVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKE 354

Query: 389 ---LDCAEESAFL---------------FREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              LD    SA +               F++M   G EPN VTI S+L  CA +  L  G
Sbjct: 355 NIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQG 414

Query: 431 KEFHCYILRRAMFN-----------EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE- 478
            E H Y L++ + +           E L++ N+L++MY++      A+++F+ + RR+  
Sbjct: 415 METHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERN 474

Query: 479 -VTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            VT+T +I GY   G+   ALKLF EM      + P+  T+  +L AC+H   +  G KQ
Sbjct: 475 VVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMG-KQ 533

Query: 536 FERMTSIYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
                + +  +    +F   C++D+Y + G ++ A+ +   MP       W +++    +
Sbjct: 534 IHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGM 592

Query: 594 H 594
           H
Sbjct: 593 H 593


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/612 (33%), Positives = 346/612 (56%), Gaps = 9/612 (1%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWN 144
           K L   + +HA  I  GL      + KL+        ++   + +     I+ P  L WN
Sbjct: 13  KTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWN 72

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDA 203
            +   +        AL +Y  M S  +  +++T+P +LK+C +      G+ +H   +  
Sbjct: 73  TMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKF 132

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             +  L++H +L+SMY + G+++ A+++ DK   RD VS+  +I+ YAS+G  + A ++F
Sbjct: 133 GFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMF 192

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            E+  +    +V++WN    G   TGN+K  LEL  +M       D    V  L AC+  
Sbjct: 193 DEIPVK----DVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQS 248

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           G+++LG+++H       +G    + NALI +YS+C +L  A  LF+  + K +I+WN+++
Sbjct: 249 GSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLI 308

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM- 442
            GYTH++  +E+  LF++M RSG +PN VT+ SIL  CA +  +  G+  H YI +R   
Sbjct: 309 GGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKG 368

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
                 L  SL++MYA+ G +  A+ VFD M  R   ++ ++I G+ + G    A  +F 
Sbjct: 369 VTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFS 428

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M KN I+PD +T V +LSACSHSG++  G+  F  MT  Y + P+LEH+ CM+DL G +
Sbjct: 429 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHS 488

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           GL  +A+++I  M   P   +W +LL AC++H N  +GE  A+ L++  PEN G YVL++
Sbjct: 489 GLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLS 548

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+YA    W+++AK R  + D G++K+PGC+ ++  +V   F++ D  + + +EIY +L 
Sbjct: 549 NIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 608

Query: 683 GLTELMKDAGYV 694
            +  L+++AG+V
Sbjct: 609 EMEVLLEEAGFV 620



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/470 (25%), Positives = 206/470 (43%), Gaps = 74/470 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K  A  +G+QLH   +  G +                             
Sbjct: 105 TFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKS 164

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+T YAS     +A  + +   ++  + WN  IS Y   G Y EAL ++K
Sbjct: 165 SHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFK 224

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           +M    +R D  T  +VL AC +   ++ GR VHS I D     +L + NAL+ +Y K G
Sbjct: 225 KMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCG 284

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +++ A  LF  +  +D +SWNT+I  Y    L+KEA  LF +M   G + N +T  +I  
Sbjct: 285 ELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSI-- 342

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG- 342
                                            L AC+H+GA+ +G+ IH    +   G 
Sbjct: 343 ---------------------------------LSACAHLGAIDIGRWIHVYIDKRLKGV 369

Query: 343 -EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               ++R +LI MY++C D+  A  +F     +S+ +WN+M+ G+     A  +  +F  
Sbjct: 370 TNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSR 429

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M ++G+EP+ +T   +L  C+    L  G+     + R       L  +  ++++   SG
Sbjct: 430 MRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSG 489

Query: 462 KVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
              EA+ + + M    D V + SL+    + G     ++L E   +N IK
Sbjct: 490 LFKEAEKMINTMEMEPDGVIWCSLLKACKMHGN----VELGESYAQNLIK 535



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 129/297 (43%), Gaps = 44/297 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  GN  +A E F ++  T    D    +   ++  C +  ++  G+Q+H+     G  
Sbjct: 210 YAETGNYKEALELFKKMMKTNVRPDE--STMVTVLSACAQSGSIELGRQVHSWINDHGFG 267

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +V  L+  Y+       AC L +  + +  + WN LI  Y     Y EAL +++ M
Sbjct: 268 XNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDM 327

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSMYGK 221
                + ++ T  S+L AC  +  +D GR +H  ID       +  SL    +L+ MY K
Sbjct: 328 LRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSL--RTSLIDMYAK 385

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A+++FD ML R   SWN MI  +A  G    AF +F  M++ G+E + IT    
Sbjct: 386 CGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDIT---- 441

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                    F G+L                       ACSH G L LG+ I  S  R
Sbjct: 442 ---------FVGLLS----------------------ACSHSGMLDLGRHIFRSMTR 467


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/647 (32%), Positives = 357/647 (55%), Gaps = 51/647 (7%)

Query: 41  LETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDS------FAHIIFCCGKVKALAQGK 94
           L  +K     GNL +A +   R      S DVVLDS         ++  CG+ K +  G+
Sbjct: 71  LHEIKKLCESGNLKEALDFLQR-----ESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGR 125

Query: 95  QLHACAIALGLEKNP-VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           +LH    A     N  VL  +++T Y+     +++  + +    +    WN ++S Y R+
Sbjct: 126 RLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRN 185

Query: 154 GFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFV 211
             + +A+ ++ ++ S    + DNFT P V+KAC  ++D+  G+++H         S +FV
Sbjct: 186 ELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFV 245

Query: 212 HNALVSMYGKFGQVDVA-RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
            NAL++MYGK G V+ A +R+FD M  +   SWN ++  YA     ++A  L+++M + G
Sbjct: 246 GNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG 305

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           ++ +   W TI    L                                ACS + +L  G+
Sbjct: 306 LDPD---WFTIGSLLL--------------------------------ACSRMKSLHYGE 330

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           EIHG A+R        +  +L+++Y  C     A +LF     +S+++WN M++GY+   
Sbjct: 331 EIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNG 390

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             +E+  LFR+M   G++P  + I  +   C++++ L+ GKE HC+ L+ A   E + + 
Sbjct: 391 LPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALK-AHLTEDIFVS 449

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           +S+++MYA+ G +  ++ +FD +  +D  ++  +IAGYGI G G+ AL+LFE+M +  +K
Sbjct: 450 SSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLK 509

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD  T   +L ACSH+GLV +G + F +M +++ I P+LEH+ C+VD+ GRAG ++ A  
Sbjct: 510 PDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALR 569

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
           +I +MP  P S +W++LL +C+IH N G+GE  A KLLE  PE    YVLI+N++A +G 
Sbjct: 570 LIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGK 629

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           WD + +VR  M+D+G++K  GC+W++ G     FL+ D    + +E+
Sbjct: 630 WDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEV 676


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/653 (33%), Positives = 356/653 (54%), Gaps = 43/653 (6%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G++  A   F  +R +    +    + A  +  C     L  G QLH+ A+  GLE    
Sbjct: 221 GDVDGAVRLFRNMRASGCEPNFA--TLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVA 278

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  YA     ++A  L E       + WN +IS  V++G + EA  ++  MQ   
Sbjct: 279 VANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSG 338

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVAR 229
            R D+ T  S+L A  ++  +  G+ VH  I   C    +F+ +ALV +Y K   V +A+
Sbjct: 339 ARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQ 398

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            L+D     D V  +TMIS Y   G+ +EA Q+F  + E+ ++ N +T            
Sbjct: 399 NLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVT------------ 446

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                                +A+V  L  C+ + AL LG++IHG  +R  Y     V +
Sbjct: 447 ---------------------IASV--LPGCASMAALPLGQQIHGYVLRNAYERKCYVES 483

Query: 350 ALITMYSRCK--DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
           AL+ MY++C   DL H YI  KM+ +K  +TWNSM+S ++     +E+  LFR+M   G+
Sbjct: 484 ALMDMYAKCGRLDLSH-YIFLKMS-QKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGI 541

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           + N +TI++ L  CA +  + +GKE H   ++  +    +   ++L++MYA+ G +  A 
Sbjct: 542 KYNNITISAALSACASLPAIYYGKEIHGVTIKGPI-KADIFAESALIDMYAKCGNLELAL 600

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            VF+ M  ++EV++ S+I+ YG  G  + ++ L   M +   KPDHVT +A++SAC+H+G
Sbjct: 601 RVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAG 660

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG + F+ MT  Y I P++EHFACMVDLY R+G L+KA + I  MP+ P + +W  L
Sbjct: 661 LVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGAL 720

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L AC++HRN  + + A+++L +  P NSGYYVL++N+ A  G WD ++KVR  M+D  + 
Sbjct: 721 LHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKIL 780

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC 700
           KIPG +WVD  N    F+  D S+ ++++IY  L  L + +++ GYV + + C
Sbjct: 781 KIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKTLLQELREEGYVPRPDLC 833



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 158/548 (28%), Positives = 264/548 (48%), Gaps = 41/548 (7%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           AG+ +L+  F         A S D    +  +++  C  + A++ G+ +H  A A+GL  
Sbjct: 117 AGQHHLAVLFYVKMWSHPAAPSPDA--HTLPYVVKSCAALGAMSLGRLVHRTARAIGLAN 174

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           +  +   LV  YA   L  NA    +    R  + WN+++   ++ G    A+ +++ M+
Sbjct: 175 DVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMR 234

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVD 226
           +     +  T    L  C    D+  G  +HS    C  E  + V N L++MY K   +D
Sbjct: 235 ASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLD 294

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A RLF+ M + D V+WN MIS     GL+ EAF LF +MQ  G                
Sbjct: 295 DAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARP------------- 341

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                 DS+  V  L A + +  LK GKE+HG  VR C      
Sbjct: 342 ----------------------DSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVF 379

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           + +AL+ +Y +C+D+R A  L+       ++  ++M+SGY     +EE+  +FR +    
Sbjct: 380 LVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQC 439

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           ++PN VTIAS+LP CA +A L  G++ H Y+LR A +     + ++L++MYA+ G++  +
Sbjct: 440 IKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNA-YERKCYVESALMDMYAKCGRLDLS 498

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
             +F  MS++DEVT+ S+I+ +   G+ + AL LF +M    IK +++T+ A LSAC+  
Sbjct: 499 HYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASL 558

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
             +  G K+   +T    I   +   + ++D+Y + G L  A  +   MP       W +
Sbjct: 559 PAIYYG-KEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMP-DKNEVSWNS 616

Query: 587 LLGACQIH 594
           ++ A   H
Sbjct: 617 IISAYGAH 624



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 145/533 (27%), Positives = 236/533 (44%), Gaps = 63/533 (11%)

Query: 61  TRIRITAASHDVV-LDSFAHIIFCCGKVKALAQGKQLHACAI---ALGLEKNPVLVPKLV 116
           T    TAA  DV   D    ++  C     L  G Q+HA A+   AL    +  L  +L+
Sbjct: 18  TTFSATAAVTDVSSADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLL 77

Query: 117 TFYASFSLYNNACFL---VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI-- 171
             Y     + +A  +   +  +     LPWN LI  +   G +  A+  Y +M S     
Sbjct: 78  GMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAP 137

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARR 230
             D  T P V+K+C  +  +  GR+VH    A      ++V +ALV MY   G +  AR 
Sbjct: 138 SPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARD 197

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
            FD + ERD V                                    WN +  GC++ G+
Sbjct: 198 AFDGIPERDCV-----------------------------------LWNVMMDGCIKAGD 222

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
             G + L   MR      +       L  C+    L  G ++H  AV+        V N 
Sbjct: 223 VDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANT 282

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           L+ MY++C+ L  A+ LF++  +  ++TWN M+SG        E+  LF +M RSG  P+
Sbjct: 283 LLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPD 342

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            +T+ S+LP    +  L+ GKE H YI+R  + N  + L ++LV++Y +   V  A++++
Sbjct: 343 SITLVSLLPALTDLNGLKQGKEVHGYIVRNCV-NMDVFLVSALVDIYFKCRDVRMAQNLY 401

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           D     D V  +++I+GY + G    AL++F  + +  IKP+ VT+ +VL  C+    + 
Sbjct: 402 DAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALP 461

Query: 531 EGQK--------QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            GQ+         +ER   +          + ++D+Y + G L+ +  I  KM
Sbjct: 462 LGQQIHGYVLRNAYERKCYVE---------SALMDMYAKCGRLDLSHYIFLKM 505



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEH--LLLWNSLVEMYARSGKVPEAKSVFDLM 473
           ++L  C    +L  G + H   +     ++H  L L   L+ MY  + +  +A +VF  +
Sbjct: 37  AVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSAL 96

Query: 474 SR---RDEVTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSACSHSGL 528
            R      + +  LI G+   G+  +A+  + +M  +     PD  T+  V+ +C+  G 
Sbjct: 97  PRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGA 156

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           +  G +   R     G+   +   + +V +Y  AGLL  A++    +P      +W  ++
Sbjct: 157 MSLG-RLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPER-DCVLWNVMM 214

Query: 589 GAC 591
             C
Sbjct: 215 DGC 217


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/649 (33%), Positives = 340/649 (52%), Gaps = 39/649 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G+   AFE F +++      + +  ++ +++       AL  GK +H+  +  G E
Sbjct: 320 YADCGHSEIAFEIFQKMQQEGVVPNRI--TYINVLNAFSGPAALKWGKTVHSHILNAGHE 377

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LV  YA    Y +   + E    R  + WN +I      G + EA  +Y QM
Sbjct: 378 SDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQM 437

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q   +  +  TY  +L AC     + +GR +HS  +     + + V NAL+SMY + G +
Sbjct: 438 QREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSI 497

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR LF+KM+ +D +SW  MI   A  GL  EA  +F +MQ+ G++ N +T+ +I    
Sbjct: 498 KDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSI---- 553

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          L ACS   AL  G+ IH   +        
Sbjct: 554 -------------------------------LNACSSPAALDWGRRIHQQVIEAGLATDA 582

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           +V N L+ MYS C  ++ A  +F    ++ I+ +N+M+ GY   +  +E+  LF  +   
Sbjct: 583 HVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G++P+ VT  ++L  CA   +L+  KE H  +L+    ++   L N+LV  YA+ G   +
Sbjct: 643 GLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSD-TSLGNALVSTYAKCGSFSD 701

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A  VFD M +R+ +++ ++I G    G G+  L+LFE M    IKPD VT V++LSACSH
Sbjct: 702 ALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSH 761

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           +GL+ EG++ F  M+  +GI P +EH+ CMVDL GRAG L++ + +I  MP+   + +W 
Sbjct: 762 AGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWG 821

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LLGAC+IH N  + E AAE  L+  P+N+  YV +++MYAA G WD  AK+R  M   G
Sbjct: 822 ALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRG 881

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           V K PG +W++ G+    F+ +D S+ ++++IY  L  LT  MK  GYV
Sbjct: 882 VTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYV 930



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/516 (30%), Positives = 254/516 (49%), Gaps = 39/516 (7%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C    AL  G+++H  A+   L  +  +   ++  YA     + A  + +    + 
Sbjct: 250 LLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKS 309

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W ++I  Y   G    A  ++++MQ   +  +  TY +VL A      + +G+ VHS
Sbjct: 310 VVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHS 369

Query: 200 CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I +A HE  L V  ALV MY K G     R++F+K++ RD ++WNTMI   A  G W+E
Sbjct: 370 HILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEE 429

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A +++ +MQ EG+  N IT+                                   VI L 
Sbjct: 430 ASEIYHQMQREGMMPNKITY-----------------------------------VILLN 454

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC +  AL  G+EIH   V+  +    +V+NALI+MY+RC  ++ A +LF     K II+
Sbjct: 455 ACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIIS 514

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W +M+ G        E+  +F++M ++G++PN VT  SIL  C+  A L  G+  H  ++
Sbjct: 515 WTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI 574

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
              +  +  +  N+LV MY+  G V +A+ VFD M++RD V Y ++I GY     G+ AL
Sbjct: 575 EAGLATDAHVA-NTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEAL 633

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           KLF+ + +  +KPD VT + +L+AC++SG  +E  K+   +    G          +V  
Sbjct: 634 KLFDRLQEEGLKPDKVTYINMLNACANSG-SLEWAKEIHSLVLKDGYLSDTSLGNALVST 692

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           Y + G  + A  +  KM      + W  ++G C  H
Sbjct: 693 YAKCGSFSDALLVFDKMMKRNVIS-WNAIIGGCAQH 727



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 127/509 (24%), Positives = 236/509 (46%), Gaps = 40/509 (7%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--CFLVENSNIRYPL 141
           C +VK L  G+++H   I      +   V  L+  Y        A   +   N   R   
Sbjct: 151 CIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVH 210

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
            WN ++  YV+ G+  EAL + ++MQ   +     T   +L +C     ++ GR +H  +
Sbjct: 211 SWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIH--V 268

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           +A                        AR LFD  +       N +++ YA  G   EA +
Sbjct: 269 EAMK----------------------ARLLFDVNVA------NCILNMYAKCGSIHEARE 300

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F +M+ +    +V++W  I GG    G+ +   E+  +M+ +    + +  +  L A S
Sbjct: 301 VFDKMETK----SVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFS 356

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
              ALK GK +H   +   +     V  AL+ MY++C   +    +F+    + +I WN+
Sbjct: 357 GPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNT 416

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+ G       EE++ ++ +M R G+ PN +T   +L  C     L  G+E H  +++  
Sbjct: 417 MIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDG 476

Query: 442 -MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            MF+  + + N+L+ MYAR G + +A+ +F+ M R+D +++T++I G    G G  AL +
Sbjct: 477 FMFD--ISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAV 534

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F++M +  +KP+ VT  ++L+ACS    +  G++  +++    G+         +V++Y 
Sbjct: 535 FQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEA-GLATDAHVANTLVNMYS 593

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLG 589
             G +  A+++  +M      A  A + G
Sbjct: 594 MCGSVKDARQVFDRMTQRDIVAYNAMIGG 622



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 209/437 (47%), Gaps = 45/437 (10%)

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVS 217
           A+ V + +Q +  R ++  Y  +LK C E+ D+  GR VH   I  C     +  NAL++
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 218 MYGKFGQVDVARRLFDKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           MY + G ++ AR++++K+   ER   SWN M+  Y   G  +EA +L  EMQ+ G+ +  
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            T                 + LLS                   +C    AL+ G+EIH  
Sbjct: 245 AT----------------TMRLLS-------------------SCKSPSALECGREIHVE 269

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE-E 394
           A++       NV N ++ MY++C  +  A  +F     KS+++W  ++ GY   DC   E
Sbjct: 270 AMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYA--DCGHSE 327

Query: 395 SAF-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
            AF +F++M + GV PN +T  ++L   +  A L+ GK  H +IL  A     L +  +L
Sbjct: 328 IAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHIL-NAGHESDLAVGTAL 386

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           V+MYA+ G   + + VF+ +  RD + + ++I G    G    A +++ +M +  + P+ 
Sbjct: 387 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNK 446

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           +T V +L+AC +   +  G++   R+    G    +     ++ +Y R G +  A+ +  
Sbjct: 447 ITYVILLNACVNPTALHWGREIHSRVVK-DGFMFDISVQNALISMYARCGSIKDARLLFN 505

Query: 574 KMPYTPTSAMWATLLGA 590
           KM      + W  ++G 
Sbjct: 506 KMVRKDIIS-WTAMIGG 521


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/610 (34%), Positives = 348/610 (57%), Gaps = 13/610 (2%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWNLLISLY 150
           + +HA  I  GL      + KL+ F      ++   + +     I+ P  L WN +   +
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSL 209
                   AL +Y  M S  +  D++T+P +LK+C +      G+ +H   +    +  +
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           +VH +L+SMY + G+++ AR++FD    RD VS+  +I+ Y S+G  + A +LF E+  +
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK 184

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSHVGALKL 328
               +V++WN +  G + TGN+K  LEL   M          +T++ +  AC+   +++L
Sbjct: 185 ----DVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+ +H       +     + NALI +YS+  ++  A  LF     K +I+WN+++ GYTH
Sbjct: 241 GRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTH 300

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR--AMFNEH 446
           ++  +E+  LF+EM RSG  PN VT+ SILP CA +  +  G+  H YI ++   +    
Sbjct: 301 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNV 360

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDL-MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
             L  SL++MYA+ G +  A+ VFD  MS R   T+ ++I+G+ + G    A  +F  M 
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMR 420

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
            N I+PD +T V +LSACSHSG++  G+  F  MT  Y I P+LEH+ CM+DL G +GL 
Sbjct: 421 MNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLF 480

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
            +A+E+I  MP  P   +W +LL AC+IH N  +GE  A+KL++  P NSG YVL++N+Y
Sbjct: 481 KEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIY 540

Query: 626 AATGCWDKLAKVRTCMRDLGV-RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           AA G W+++AK+R  + D G+ +K+PGC+ ++  +V   F++ D  + Q +EIY +L  +
Sbjct: 541 AAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEM 600

Query: 685 TELMKDAGYV 694
             L+++AG+V
Sbjct: 601 EVLLEEAGFV 610



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 212/473 (44%), Gaps = 77/473 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C K K   +G+Q+H   + LG + +  +   L++ YA      +A  + + S
Sbjct: 91  TFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDIS 150

Query: 136 NIR---------------------------YP----LPWNLLISLYVRDGFYAEALCVYK 164
           + R                            P    + WN +IS YV  G Y EAL ++K
Sbjct: 151 SHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFK 210

Query: 165 Q-MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
           + M    +R D  T  +V+ AC +   ++ GR VHS I D     +L + NAL+ +Y KF
Sbjct: 211 EMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKF 270

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+V+ A  LFD +  +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  +I 
Sbjct: 271 GEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI- 329

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH---GSAVRG 339
                                             L AC+H+GA+ +G+ IH      ++G
Sbjct: 330 ----------------------------------LPACAHLGAIDIGRWIHVYINKKLKG 355

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMT-AEKSIITWNSMLSGYTHLDCAEESAFL 398
                 +++ +LI MY++C D+  A  +F  + + +S+ TWN+M+SG+     A  +  +
Sbjct: 356 VVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDI 415

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F  M  +G+EP+ +T   +L  C+    L  G+     + R       L  +  ++++  
Sbjct: 416 FSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLG 475

Query: 459 RSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            SG   EA+ + + M    D V + SL+    I G     L+L E   K  IK
Sbjct: 476 HSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN----LELGESFAKKLIK 524



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 175/435 (40%), Gaps = 84/435 (19%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108
           GN  +A E F  + +     +V  D  +   ++  C +  ++  G+ +H+     G   N
Sbjct: 200 GNYKEALELFKEMMMMT---NVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASN 256

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             +V  L+  Y+ F     AC L +    +  + WN LI  Y     Y EAL ++++M  
Sbjct: 257 LKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 316

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF----VHNALVSMYGKFGQ 224
                ++ T  S+L AC  +  +D GR +H  I+   +  +     +  +L+ MY K G 
Sbjct: 317 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGD 376

Query: 225 VDVARRLFD-KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +D A+++FD  M  R   +WN MIS +A  G    AF +F  M+  G+E + IT      
Sbjct: 377 IDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDIT------ 430

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                  F G+L                       ACSH G L LG+ I  S  RG    
Sbjct: 431 -------FVGLLS----------------------ACSHSGMLDLGRNIFRSMTRG---- 457

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
                      Y     L H               +  M+    H    +E+  +   M 
Sbjct: 458 -----------YEITPKLEH---------------YGCMIDLLGHSGLFKEAEEMINTM- 490

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN--EHLLLWNSLVEMYARSG 461
              +EP+ V   S+L  C    NL+ G+ F   +++    N   ++LL N    +YA +G
Sbjct: 491 --PMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSN----IYAAAG 544

Query: 462 KVPEAKSVFDLMSRR 476
           +  E   +  L++ +
Sbjct: 545 RWNEVAKIRALLNDK 559


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/613 (34%), Positives = 345/613 (56%), Gaps = 11/613 (1%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWN 144
           K L   + +HA  I +GL      + KL+ F      +    + +     I+ P  L WN
Sbjct: 44  KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWN 103

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-- 202
            +   +        AL +Y  M S  +  +++T+P VLK+C +      G+ +H  +   
Sbjct: 104 TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKL 163

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
            C +  L+VH +L+SMY + G+++ A ++FDK   RD VS+  +I  YAS+G  + A +L
Sbjct: 164 GC-DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKL 222

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F E+  +    +V++WN +  G   TGN+K  LEL   M       D    V  + AC+ 
Sbjct: 223 FDEIPVK----DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            G+++LG+++H       +G    + NALI +YS+C +L  A  LF+    K +I+WN++
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           + GYTH++  +E+  LF+EM RSG  PN VT+ SILP CA +  +  G+  H YI +R  
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398

Query: 443 -FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
                  L  SL++MYA+ G +  A  VF+ +  +   ++ ++I G+ + G    +  LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M K  I+PD +T V +LSACSHSG++  G+  F  MT  Y + P+LEH+ CM+DL G 
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           +GL  +A+E+I  M   P   +W +LL AC++H N  +GE  AE L++  PEN G YVL+
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+YA+ G W+++AK R  + D G++K+PGC+ ++  +V   F++ D  + + +EIY +L
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638

Query: 682 GGLTELMKDAGYV 694
             +  L++ AG+V
Sbjct: 639 EEMEVLLEKAGFV 651



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 189/421 (44%), Gaps = 71/421 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALG---------------------------LEKN 108
           +F  ++  C K KA  +G+Q+H   + LG                            +K+
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195

Query: 109 P----VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           P    V    L+  YAS     NA  L +   ++  + WN +IS Y   G Y EAL ++K
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
            M    +R D  T  +V+ AC +   ++ GR VH  ID  H +  +L + NAL+ +Y K 
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD-HGFGSNLKIVNALIDLYSKC 314

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+++ A  LF+++  +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  +I 
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI- 373

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L AC+H+GA+ +G+ IH    +   G
Sbjct: 374 ----------------------------------LPACAHLGAIDIGRWIHVYIDKRLKG 399

Query: 343 --EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                ++R +LI MY++C D+  A+ +F     KS+ +WN+M+ G+     A+ S  LF 
Sbjct: 400 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFS 459

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M + G++P+ +T   +L  C+    L  G+     + +       L  +  ++++   S
Sbjct: 460 RMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHS 519

Query: 461 G 461
           G
Sbjct: 520 G 520



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 114/248 (45%), Gaps = 9/248 (3%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  GN  +A E F  +  T    D    +   ++  C +  ++  G+Q+H      G  
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDE--STMVTVVSACAQSGSIELGRQVHLWIDDHGFG 298

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +V  L+  Y+       AC L E    +  + WN LI  Y     Y EAL ++++M
Sbjct: 299 SNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM 358

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSMYGK 221
                  ++ T  S+L AC  +  +D GR +H  ID       +  SL    +L+ MY K
Sbjct: 359 LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL--RTSLIDMYAK 416

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A ++F+ +L +   SWN MI  +A  G    +F LF  M++ G++ + IT+  +
Sbjct: 417 CGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGL 476

Query: 282 AGGCLRTG 289
              C  +G
Sbjct: 477 LSACSHSG 484


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/651 (33%), Positives = 354/651 (54%), Gaps = 39/651 (5%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G++  A   F  +R++    +    + A  +  C     L  G QLH+ A+  GLE+   
Sbjct: 221 GDVGGAVRLFRNMRVSGCEPNFA--TLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVA 278

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L++ YA     ++A  L E       + WN +IS  V++G   EAL ++  M    
Sbjct: 279 VANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSG 338

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
            R D+ T  S+L A  ++  +  G+ VH   I  C     F+ +ALV +Y K   V  AR
Sbjct: 339 ARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTAR 398

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            L+D     D V  +T+IS Y   G+ ++A Q+F  + E+ ++ N +T            
Sbjct: 399 NLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVT------------ 446

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                                VA+V  L AC+ + AL LG+EIHG  +R  Y     V +
Sbjct: 447 ---------------------VASV--LPACASISALPLGQEIHGYVLRNAYEGKCYVES 483

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ MY++C  L  ++ +F   + K  +TWNSM+S ++     +E+  LFR+M   G++ 
Sbjct: 484 ALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKY 543

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N VTI+S L  CA +  + +GKE H  I++  +    +   ++L++MYA+ G +  A  V
Sbjct: 544 NNVTISSALSACASLPAIYYGKEIHGVIIKGPI-KADIFAESALIDMYAKCGNMELALRV 602

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+ M  ++EV++ S+I+ YG  G  + ++     M +   KPDHVT +A++SAC+H+GLV
Sbjct: 603 FEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLV 662

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG + F+ MT  Y I P++EHFACMVDLY R+G L+KA + I  MP+ P + +W  LL 
Sbjct: 663 EEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLH 722

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++HRN  + + A+++L +  P NSGYYVL++N+ A  G WD ++KVR  M+D  + KI
Sbjct: 723 ACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKI 782

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC 700
           PG +WVD  N    F+  D S+ ++++IY  L  L + +++ GYV + + C
Sbjct: 783 PGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKALLQELREEGYVPRPDLC 833



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 153/558 (27%), Positives = 267/558 (47%), Gaps = 51/558 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ F   G+ S A   + ++    A+      +  +++  C  + A++ G+ +H  A A 
Sbjct: 111 IRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARAT 170

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL  +  +   L+  Y+   L  +A    +    R  + WN+++  Y++ G    A+ ++
Sbjct: 171 GLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLF 230

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
           + M+      +  T    L  C    D+  G  +HS    C  E  + V N L+SMY K 
Sbjct: 231 RNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKC 290

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             +D A RLF+ +   D V+WN MIS     GL  EA  LF +M                
Sbjct: 291 RCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDM---------------- 334

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
              LR+G                   DSV  V  L A + +  LK GKE+HG  +R C  
Sbjct: 335 ---LRSG----------------ARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVH 375

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               + +AL+ +Y +C+D+R A  L+       ++  ++++SGY     +E++  +FR +
Sbjct: 376 MDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYL 435

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
               ++PN VT+AS+LP CA ++ L  G+E H Y+LR A +     + ++L++MYA+ G+
Sbjct: 436 LEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNA-YEGKCYVESALMDMYAKCGR 494

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  +  +F  MS +DEVT+ S+I+ +   GE + AL LF +M    IK ++VT+ + LSA
Sbjct: 495 LDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSA 554

Query: 523 CSHSGLVVEGQKQFERMTSIYGIF---P-QLEHFA--CMVDLYGRAGLLNKAKEIITKMP 576
           C+    +  G++       I+G+    P + + FA   ++D+Y + G +  A  +   MP
Sbjct: 555 CASLPAIYYGKE-------IHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMP 607

Query: 577 YTPTSAMWATLLGACQIH 594
                  W +++ A   H
Sbjct: 608 -DKNEVSWNSIISAYGAH 624



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 235/516 (45%), Gaps = 58/516 (11%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP---VLVPKLVTFYASFSLYNNACFL 131
           D    ++  C     L  G Q+HA A+  G   N     L  +L+  Y     + +A  +
Sbjct: 33  DRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAV 92

Query: 132 ---VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI--RGDNFTYPSVLKACG 186
              +  +     LPWN LI  +   G ++ A+  Y +M +       D  T P V+K+C 
Sbjct: 93  FSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCA 152

Query: 187 EMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
            +  V  GR+VH    A    S ++V +AL+ MY   G +  AR  FD M  RD V WN 
Sbjct: 153 ALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNV 212

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           M+  Y   G    A +LF  M+  G E N  T       C                    
Sbjct: 213 MMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATL-----ACF------------------- 248

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
                      L  C+    L  G ++H  AV+    +   V N L++MY++C+ L  A+
Sbjct: 249 -----------LSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAW 297

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            LF++     ++TWN M+SG       +E+  LF +M RSG  P+ VT+ S+LP    + 
Sbjct: 298 RLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLN 357

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            L+ GKE H YI+R  +  +  L+ ++LV++Y +   V  A++++D     D V  +++I
Sbjct: 358 GLKQGKEVHGYIIRNCVHMDAFLV-SALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVI 416

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG- 544
           +GY + G    AL++F  + +  IKP+ VT+ +VL AC+    +  GQ+       I+G 
Sbjct: 417 SGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQE-------IHGY 469

Query: 545 IFPQLEHFACMV-----DLYGRAGLLNKAKEIITKM 575
           +        C V     D+Y + G L+ +  I +KM
Sbjct: 470 VLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKM 505



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 19/198 (9%)

Query: 416 SILPLCARVANLQHGKEFHCY-ILRRAMFNE-HLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           ++L  C    +L  G + H   ++  A+ N  HL L   L+ MY  + +  +A +VF  +
Sbjct: 37  ALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSAL 96

Query: 474 SRR---DEVTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSACSHSGL 528
            R      + +  LI G+   G   +A+  + +M  +     PD  T+  V+ +C+  G 
Sbjct: 97  PRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGA 156

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           V  G +   R     G+   +   + ++ +Y  AGLL  A++    MP+     +W  ++
Sbjct: 157 VSLG-RLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWR-DCVLWNVMM 214

Query: 589 ----------GACQIHRN 596
                     GA ++ RN
Sbjct: 215 DGYIKAGDVGGAVRLFRN 232


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 345/608 (56%), Gaps = 13/608 (2%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWNLLISLY 150
           + +HA  I  GL      + KL+ F      ++   + +     I+ P  L WN +   +
Sbjct: 7   RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 66

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID--ACHEWS 208
                   AL +Y  M S  +  +++T+P +LK+C +      G+ +H  +    C +  
Sbjct: 67  ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC-DLD 125

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           L+VH +L+SMY + G+++ A ++FD+   RD VS+  +I  YAS+G  + A ++F E+  
Sbjct: 126 LYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPV 185

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           +    +V++WN +  G   TGN+K  LEL   M       D    V  + AC+  G+++L
Sbjct: 186 K----DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 241

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+++H       +G    + NALI +YS+C +L  A  LF+    K +I+WN+++ GYTH
Sbjct: 242 GRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTH 301

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR--AMFNEH 446
           ++  +E+  LF+EM RSG  PN VT+ SILP CA +  +  G+  H YI +R   + N  
Sbjct: 302 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANAS 361

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
            L   SL++MYA+ G +  A  VF+ +  +   ++ ++I G+ + G    +  +F  M K
Sbjct: 362 SLR-TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK 420

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
           N I+PD +T V +LSACSHSG++  G+  F  MT  Y + P+LEH+ CM+DL G +GL  
Sbjct: 421 NGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFK 480

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A+E+I  M   P   +W +LL AC++H N  +GE  A+ L++  PEN G YVL++N+YA
Sbjct: 481 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYA 540

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
             G W+++A  R  + D G++K+PGC+ ++  +V   F++ D  + + +EIY +L  +  
Sbjct: 541 TAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEV 600

Query: 687 LMKDAGYV 694
           L+++AG+V
Sbjct: 601 LLEEAGFV 608



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 211/471 (44%), Gaps = 76/471 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K KA  +G+Q+H   + LG +                             
Sbjct: 93  TFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDES 152

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+  YAS     NA  + +   ++  + WN +IS Y   G Y EAL ++K
Sbjct: 153 PHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 212

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
            M    +R D  T  +V+ AC +   ++ GR VHS ID  H +  +L + NAL+ +Y K 
Sbjct: 213 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDD-HGFGSNLKIVNALIDLYSKC 271

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+++ A  LF+ +  +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  +I 
Sbjct: 272 GELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI- 330

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L AC+H+GA+ +G+ IH    +   G
Sbjct: 331 ----------------------------------LPACAHLGAIDIGRWIHVYIDKRLKG 356

Query: 343 --EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                ++R +LI MY++C D+  A+ +F     KS+ +WN+M+ G+     A+ S  +F 
Sbjct: 357 VANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFS 416

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M ++G+EP+ +T   +L  C+    L  G+     + +       L  +  ++++   S
Sbjct: 417 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHS 476

Query: 461 GKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           G   EA+ + + M    D V + SL+    + G     ++L E   +N IK
Sbjct: 477 GLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGN----VELGESFAQNLIK 523



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 9/251 (3%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  GN  +A E F  +  T    D    +   ++  C +  ++  G+Q+H+     
Sbjct: 195 ISGYAETGNYKEALELFKDMMKTNVRPDE--STMVTVVSACAQSGSIELGRQVHSWIDDH 252

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   N  +V  L+  Y+       AC L E    +  + WN LI  Y     Y EAL ++
Sbjct: 253 GFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLF 312

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSM 218
           ++M       ++ T  S+L AC  +  +D GR +H  ID       +  SL    +L+ M
Sbjct: 313 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSL--RTSLIDM 370

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G ++ A ++F+ +L +   SWN MI  +A  G    +F +F  M++ G+E + IT+
Sbjct: 371 YAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITF 430

Query: 279 NTIAGGCLRTG 289
             +   C  +G
Sbjct: 431 VGLLSACSHSG 441


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/725 (31%), Positives = 373/725 (51%), Gaps = 68/725 (9%)

Query: 14  SVSQLEKFIPKKWKQPINNEHIMRINLLE----------------------------TLK 45
           S+ +L +FIP   K  + +EH+ +  L+                              LK
Sbjct: 89  SMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLK 148

Query: 46  DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
            +A   +L  A   F R+R        V+ +F +++  CG    L +GK++H   I  G 
Sbjct: 149 GYARNSSLDDAVSFFCRMRYDGVR--PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGF 206

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             N   +  +V  YA   L   A  + +    R  + WN +IS Y ++GF   AL +  +
Sbjct: 207 ASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLR 266

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           MQ    R D+ T  S+L A  ++  +  GR +H   + A  E  + V  ALV MY K G 
Sbjct: 267 MQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGS 326

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           V  AR +FD+M  +                                    V++WN++  G
Sbjct: 327 VGTARLIFDRMTGK-----------------------------------TVVSWNSMIDG 351

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
            ++ G+    +E+  +M  ++  + +V  +  L AC+ +G ++ G+ +H    +   G  
Sbjct: 352 YVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSD 411

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
            +V N+LI+MYS+CK +  A  +F+    K++++WN+M+ GY       E+   F +M  
Sbjct: 412 VSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQL 471

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
             ++P+  T+ S++P  A ++ L   K  H  ++R  + ++++ +  +LV+MYA+ G V 
Sbjct: 472 QNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCL-DKNVFVATALVDMYAKCGAVH 530

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A+ +FD+M  R   T+ ++I GYG  G G+ AL+LFE+M K  IKP+ VT + VLSACS
Sbjct: 531 TARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACS 590

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           HSGLV EG + F  M   YG+ P ++H+  MVDL GRA  LN+A + I KMP  P  +++
Sbjct: 591 HSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVF 650

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             +LGAC+IH+N  +GE AA ++ +  P++ GY+VL+AN+YA    WDK+A+VRT M   
Sbjct: 651 GAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKK 710

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSE-E 703
           G++K PG + V+  N    F    TS+ QA++IY  L  L   +K AGY+       + E
Sbjct: 711 GIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSVHDVE 770

Query: 704 EIVEE 708
           ++V+E
Sbjct: 771 DVVKE 775


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 323/573 (56%), Gaps = 17/573 (2%)

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQ 167
           VL P    F  + S++         + I+ P  L WN ++  Y        AL +Y  M 
Sbjct: 8   VLSPHFDGFPYAISVF---------ATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMI 58

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVD 226
           S  +  +++T+P +LK+C +    + G+ +H   +   +E  L+VH +L+SMY + G+++
Sbjct: 59  SLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLE 118

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A ++FD+   RD VS+  +I+ YAS G  + A ++F E+  +    +V++WN +  G  
Sbjct: 119 DAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVK----DVVSWNAMISGYA 174

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
            TG++K  LEL   M       D    V  L AC+   +++LG+++H       +G    
Sbjct: 175 ETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLK 234

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           + NALI +YS+C  +  A  LF+  + K +++WN+++ GYTH++  +E+  LF+EM RSG
Sbjct: 235 IVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSG 294

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPE 465
             PN VTI SILP CA +  +  G+  H YI ++         L  SL++MYA+ G +  
Sbjct: 295 ESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEA 354

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A  VF+ M  +   ++ ++I G+ + G       LF  M KN I+PD +T V +LSACSH
Sbjct: 355 AHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSH 414

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           SG +  G+  F+ MT  Y I P+LEH+ CM+DL G +GL  +AKE+I  MP  P   +W 
Sbjct: 415 SGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWC 474

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
           +LL AC+ H N  + E  A  L++  PEN G YVL++N+YA  G WD++AKVR  +   G
Sbjct: 475 SLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKG 534

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           ++K+PGC+ ++  +    F+V D  + + +EIY
Sbjct: 535 MKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIY 567



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 176/437 (40%), Gaps = 83/437 (18%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G+  +A E F  +  T    D    +   ++  C + +++  G+Q+H+     G  
Sbjct: 173 YAETGSYKEALELFKEMMKTNVRPDE--GTMVTVLSACAQSRSVELGRQVHSWIDDHGFG 230

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +V  L+  Y+       AC L E  + +  + WN LI  Y     Y EAL ++++M
Sbjct: 231 SNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM 290

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-----DACHEWSLFVHNALVSMYGK 221
                  ++ T  S+L AC  +  +D GR +H  I     D  +  SL    +L+ MY K
Sbjct: 291 LRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSL--RTSLIDMYAK 348

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A ++F+ ML +   SWN MI  +A  G     F LF  M++ G+E + IT    
Sbjct: 349 CGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDIT---- 404

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                    F G+                      L ACSH G L LG+ I  S  +   
Sbjct: 405 ---------FVGL----------------------LSACSHSGKLDLGRHIFKSMTQD-- 431

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                        Y     L H               +  M+    H    +E+  + + 
Sbjct: 432 -------------YDITPKLEH---------------YGCMIDLLGHSGLFKEAKEMIKT 463

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN--EHLLLWNSLVEMYAR 459
           M    +EP+ V   S+L  C R  NL+  + F   +++    N   ++LL N    +YA 
Sbjct: 464 M---PMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSN----IYAT 516

Query: 460 SGKVPEAKSVFDLMSRR 476
           +G+  E   V  L++ +
Sbjct: 517 AGEWDEVAKVRALLNGK 533


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/556 (34%), Positives = 321/556 (57%), Gaps = 6/556 (1%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           L WN +   +        AL +Y  M S  +  +++T+P +LK+C ++     G  +H  
Sbjct: 29  LIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGH 88

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +   +E  L+VH +L+SMY +  +++ A ++FD+   RD VS+  +++ YAS+G  + A
Sbjct: 89  VLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESA 148

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             +F E+  +    +V++WN +  G + TGN+K  LEL   M       D    V  + A
Sbjct: 149 RNMFDEIPVK----DVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISA 204

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
            +  G+++LG+++H       +G    + NALI  YS+C ++  A  LF   + K +I+W
Sbjct: 205 SARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISW 264

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N ++ GYTHL+  +E+  LF+EM RSG  PN VT+ SIL  CA +  +  G+  H YI +
Sbjct: 265 NILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDK 324

Query: 440 RAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R         L  SL++MY++ G +  A  VF+ M  +    + ++I G+ + G    A 
Sbjct: 325 RLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAF 384

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            +F  M KN+IKPD +T V +LSACSH+G++  G+  F  MT  Y I P+LEH+ CM+DL
Sbjct: 385 DIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDL 444

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            G +GL  +A+E+I+ M   P   +W +LL AC++H N  +GE  A+ L +  P N G Y
Sbjct: 445 LGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSY 504

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+YA  G W+++A++R  + D G++K+PGC+ ++  +V   F++ D  + + +EIY
Sbjct: 505 VLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 564

Query: 679 PLLGGLTELMKDAGYV 694
            +L  +  L+++AG+V
Sbjct: 565 GMLEEMEVLLQEAGFV 580



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 208/481 (43%), Gaps = 72/481 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K+KA  +G Q+H   + LG E                             
Sbjct: 65  TFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRS 124

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    LVT YAS     +A  + +   ++  + WN +IS YV  G Y EAL ++K
Sbjct: 125 SHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFK 184

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           +M    +R D  T  +V+ A      ++ GR VHS I D     +L + NAL+  Y K G
Sbjct: 185 EMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCG 244

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +++ A  LF  +  +D +SWN +I  Y    L+KEA  LF EM   G   N +T  +I  
Sbjct: 245 EMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSI-- 302

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG- 342
                                            L AC+H+GA+ +G+ IH    +   G 
Sbjct: 303 ---------------------------------LHACAHLGAIDIGRWIHVYIDKRLKGV 329

Query: 343 -EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               ++R +LI MYS+C D+  A+ +F     KS+  WN+M+ G+     A  +  +F  
Sbjct: 330 TNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSR 389

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M ++ ++P+ +T   +L  C+    L  G+     +         L  +  ++++   SG
Sbjct: 390 MRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSG 449

Query: 462 KVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
              EA+ +   M+   D V + SL+    + G   +  K  + + K  I+P++     +L
Sbjct: 450 LFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFK--IEPNNPGSYVLL 507

Query: 521 S 521
           S
Sbjct: 508 S 508



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 194/440 (44%), Gaps = 81/440 (18%)

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
           F  +  A  +F+ + E + + WNTM   +A       A +L+V M   G+  N  T+  +
Sbjct: 10  FEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFL 69

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L +C+ + A K G +IHG  ++  Y
Sbjct: 70  -----------------------------------LKSCAKLKASKEGLQIHGHVLKLGY 94

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAE---------------------------- 373
                V  +LI+MY + + L  A+ +F  ++                             
Sbjct: 95  ELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDE 154

Query: 374 ---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              K +++WN+M+SGY      +E+  LF+EM ++ V P+  T+ +++   AR  +++ G
Sbjct: 155 IPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELG 214

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           ++ H +I     F  +L + N+L++ Y++ G++  A  +F  +S +D +++  LI GY  
Sbjct: 215 RQVHSWIADHG-FGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTH 273

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ-------KQFERMTSIY 543
               + AL LF+EM ++   P+ VTM+++L AC+H G +  G+       K+ + +T+  
Sbjct: 274 LNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNAS 333

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG-ACQIHRNTGIGEW 602
            +   L      +D+Y + G +  A ++   M +    A  A + G A     N     +
Sbjct: 334 SLRTSL------IDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIF 387

Query: 603 AAEKLLETRPENSGYYVLIA 622
           +  +  E +P++  +  L++
Sbjct: 388 SRMRKNEIKPDDITFVGLLS 407



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 151/390 (38%), Gaps = 64/390 (16%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           GN  +A E F  +  T    D    +   +I    +  ++  G+Q+H+     G   N  
Sbjct: 174 GNYKEALELFKEMMKTNVRPDE--STMVTVISASARSGSIELGRQVHSWIADHGFGSNLK 231

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +V  L+ FY+       AC L    + +  + WN+LI  Y     Y EAL ++++M    
Sbjct: 232 IVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSG 291

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSMYGKFGQV 225
              ++ T  S+L AC  +  +D GR +H  ID       +  SL    +L+ MY K G +
Sbjct: 292 ESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSL--RTSLIDMYSKCGDI 349

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + A ++F+ ML +   +WN MI  +A  G    AF +F  M                   
Sbjct: 350 EAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRM------------------- 390

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                           R  E   D +  V  L ACSH G L LG+ I     R     Y+
Sbjct: 391 ----------------RKNEIKPDDITFVGLLSACSHAGMLDLGRHI----FRSMTHNYK 430

Query: 346 NVRNALITMYSRCKDLRHAYILFK--------MTAEKSIITWNSMLSGYTHLDCAEESAF 397
                 +  Y    DL     LFK        MT E   + W S+L         E    
Sbjct: 431 ITPK--LEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEK 488

Query: 398 LFREMFRSGVEPN----YVTIASILPLCAR 423
             + +F+  +EPN    YV +++I     R
Sbjct: 489 FAQNLFK--IEPNNPGSYVLLSNIYATAGR 516


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/727 (30%), Positives = 376/727 (51%), Gaps = 69/727 (9%)

Query: 14  SVSQLEKFIPKKWKQPINNEHIMRINLLE----------------------------TLK 45
           S+ +L + IP   K  + NEH+ +  L+                              LK
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 46  DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
            +A   +L  A     R+R        V+ +F +++  CG    L +GK++H   I    
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVK--PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSF 178

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             N   +  +V  YA     ++A  + +    R  + WN +I+ + ++GF  +AL +  +
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLR 238

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           MQ    R D+ T  +VL A  ++  +  G+ +H   I A     + +  AL  MY K G 
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           V+ AR +FD M ++  VSWN+M+  Y   G  ++A  +F +M EEG++   +T       
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT------- 351

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                    ++E                    L AC+ +G L+ GK +H    +   G  
Sbjct: 352 ---------IME-------------------ALHACADLGDLERGKFVHKFVDQLNLGSD 383

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
            +V N+LI+MYS+CK +  A  +F     ++ ++WN+M+ GY       E+   F EM  
Sbjct: 384 ISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKS 443

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G++P+  T+ S++P  A ++  +H K  H  I+R  + ++++ +  +LV+MY++ G + 
Sbjct: 444 LGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCL-DKNIFVTTALVDMYSKCGAIH 502

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A+ +FD++S R  +T+ ++I GYG  G GR AL LF++M K  ++P+ +T ++V+SACS
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           HSGLV EG + F+ M   YG+ P ++H+  MVDL GRAG + +A + I  MP +P   ++
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             +LGAC+IH+N  +GE AA+KL E  P+  GY+VL+AN+YA+T  W K+A+VR  M   
Sbjct: 623 GAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC--SE 702
           G++K PGC+ V+  N    F    T++ Q++ IY  L  L   +K AGYV         E
Sbjct: 683 GLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVE 742

Query: 703 EEIVEEI 709
           +++ E++
Sbjct: 743 DDVQEQL 749



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 86/202 (42%), Gaps = 15/202 (7%)

Query: 415 ASILPLCARVANLQHGKEFHCYI---LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           A +L LC  +      KE H  I   ++  ++NEHL     LV ++++ G + EA  VF+
Sbjct: 53  AVLLELCTSM------KELHQIIPLVIKNGLYNEHLF-QTKLVSLFSKYGSINEAARVFE 105

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +  + +  Y +++ GY        AL     M  + +KP       +L  C  +  +  
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKR 165

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G++   ++ +       +     +V++Y +   ++ A ++  +MP     + W T++   
Sbjct: 166 GKEIHGQLIT-NSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVS-WNTIIAGF 223

Query: 592 QIHRNTGIGEWAAEKLLETRPE 613
                 G  + A E +L  + E
Sbjct: 224 S---QNGFAKKALELVLRMQDE 242


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/724 (31%), Positives = 371/724 (51%), Gaps = 44/724 (6%)

Query: 14  SVSQLEKFIPKK--WKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHD 71
           ++S LE+  P    W   +  EHI               G+L +A     R+       D
Sbjct: 102 ALSVLERVTPSPAVWWNLLVREHI-------------KEGHLDRAIGVSCRMLRAGTKPD 148

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
                +A  +  CG++ +   G+ LH      G E N  +   LV  Y+      +A  +
Sbjct: 149 HFTLPYA--LKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 132 ---VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM------QSRRIRGDNFTYPSVL 182
              +    I   + WN +++ +V+      AL ++ +M      ++   R D  +  ++L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 183 KACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
            AC  +  +   + +HS  I        FV NAL+  Y K G ++ A ++F+ M  +D V
Sbjct: 267 PACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVV 326

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SWN M++ Y   G +  AF+LF  M++E + ++VITW+ +  G  + G  +  L+   +M
Sbjct: 327 SWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN------------VRN 349
               +  +SV  +  L AC+ +GAL  G EIH  +++ C    +N            V N
Sbjct: 387 ILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYN 446

Query: 350 ALITMYSRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-- 405
           ALI MYS+C+  + A  +F      E++++TW  M+ GY     + ++  +F EM     
Sbjct: 447 ALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPY 506

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL-LLWNSLVEMYARSGKVP 464
            V PN  TI+ IL  CA +A L+ GK+ H Y+ R   +   +  + N L++MY++ G V 
Sbjct: 507 AVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVD 566

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A++VFD M +R+EV++TS+++GYG+ G G+ AL +F++M K    PD ++ + +L ACS
Sbjct: 567 TARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACS 626

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           HSG+V +G   F+ M   Y +    EH+AC++DL  R G L+KA + I +MP  P++ +W
Sbjct: 627 HSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIW 686

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LL AC++H N  + E+A  KL+  + EN G Y LI+N+YA    W  +A++R  M+  
Sbjct: 687 VALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKS 746

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
           G++K PGC+WV      + F V D S+  + EIY LL  L   +K  GYV +  F   + 
Sbjct: 747 GIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDV 806

Query: 705 IVEE 708
             EE
Sbjct: 807 DDEE 810



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 160/600 (26%), Positives = 272/600 (45%), Gaps = 110/600 (18%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG---------------LEKNPVLVPK- 114
           DV    FA ++  C  V  +   +Q+H   IA G               L  +  + PK 
Sbjct: 28  DVSPTHFASLLKECRSVNTV---RQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKS 84

Query: 115 ----LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
               +V  Y +     +A  ++E       + WNLL+  ++++G    A+ V  +M    
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVA 228
            + D+FT P  LKACGE+     GR +H  I  C+  E ++FV NALV+MY + G ++ A
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCGRALHGLI-CCNGFESNVFVCNALVAMYSRCGSLEDA 203

Query: 229 RRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             +FD++  +   D +SWN++++A+      + A +LF EM                   
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMS------------------ 245

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                      ++   +      D ++ V  L AC+ + AL   KEIH  A+R       
Sbjct: 246 -----------MIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADA 294

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH----------------- 388
            V NALI  Y++C  +  A  +F +   K +++WN+M++GYT                  
Sbjct: 295 FVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKE 354

Query: 389 ---LD---------------CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              LD               C++E+   F++M   G EPN VTI S+L  CA +  L  G
Sbjct: 355 NIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQG 414

Query: 431 KEFHCYILRRAMFN-----------EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE- 478
            E H Y L++ + +           E L+++N+L++MY++      A+S+FD + RR+  
Sbjct: 415 MEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERN 474

Query: 479 -VTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            VT+T +I GY   G+   ALK+F EM      + P+  T+  +L AC+H   +  G++ 
Sbjct: 475 VVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQI 534

Query: 536 FERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
              +T  +   P +   A C++D+Y + G ++ A+ +   MP       W +++    +H
Sbjct: 535 HAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMH 593


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/622 (33%), Positives = 348/622 (55%), Gaps = 39/622 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F ++I  CG + ++A G+ +H     +G E +  +   L+ FY+     ++A +L +  
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN++++ YV++G +  A  V+ +M+      ++ T+  VL  C   + ++FG 
Sbjct: 209 PSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGS 268

Query: 196 VVHS-CIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
            +H   + +  E    V N  AL+ +Y K   V++AR++FD+    D V    MIS Y  
Sbjct: 269 QLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVL 328

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G+   A ++F  + +E                              RMR     L SV 
Sbjct: 329 NGMNNNALEIFRWLLQE------------------------------RMRANSVTLASV- 357

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               L AC+ + AL LGKE+HG  ++  +G    V +A++ MY++C  L  A+  F   +
Sbjct: 358 ----LPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS 413

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +K  + WNSM++  +     EE+  LFR+M  +G + + V+I++ L  CA +  L +GKE
Sbjct: 414 DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKE 473

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H +++R A F   L   ++L++MY++ G +  A  VFD M  ++EV++ S+IA YG  G
Sbjct: 474 IHAFMMRGA-FRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHG 532

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
             + +L LF  M  + I+PDHVT +A++SAC H+G V EG   F  MT   GI  ++EH+
Sbjct: 533 RLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHY 592

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           ACMVDL+GRAG LN+A  +I  MP++P + +W TLLGAC++H N  + E A+  L +  P
Sbjct: 593 ACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDP 652

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           +NSGYYVL++N++A  G W+ + K+R+ M++ GV+K+PGC+W+D  N    F+  D S+ 
Sbjct: 653 QNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHP 712

Query: 673 QAQEIYPLLGGLTELMKDAGYV 694
           Q+ +IY LL  L   ++  GYV
Sbjct: 713 QSSQIYLLLKNLFLELRKEGYV 734



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 146/542 (26%), Positives = 239/542 (44%), Gaps = 55/542 (10%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           ++ +  + D +      I+  C     L+QG+Q HA  +  G+  N +L  KL+  Y   
Sbjct: 35  LQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC 94

Query: 123 SLYNNACFLVENSNIRYPL------PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
             + +A       NI Y L      PWN +I  +   G +  AL  Y +M       D +
Sbjct: 95  GAFLDA------KNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKY 148

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           T+P V+KACG +  V  GRVVH  I     E  +FV ++L+  Y + G +  AR LFD+M
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             +D V                                    WN +  G ++ G++    
Sbjct: 209 PSKDGV-----------------------------------LWNVMLNGYVKNGDWDNAT 233

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN--ALIT 353
            +   MR  ET  +SV     L  C+    +  G ++HG  V         V N  ALI 
Sbjct: 234 GVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALID 293

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           +Y +C+D+  A  +F       I+   +M+SGY        +  +FR + +  +  N VT
Sbjct: 294 IYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVT 353

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           +AS+LP CA +A L  GKE H +IL+         + +++++MYA+ G++  A   F  +
Sbjct: 354 LASVLPACAGLAALTLGKELHGHILKNG-HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGI 412

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           S +D V + S+I      G+   A+ LF +M     K D V++ A LSAC++   +  G+
Sbjct: 413 SDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGK 472

Query: 534 KQFERMTSIYGIF-PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           +    M  + G F   L   + ++D+Y + G L+ A  +   M        W +++ A  
Sbjct: 473 EIHAFM--MRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTME-EKNEVSWNSIIAAYG 529

Query: 593 IH 594
            H
Sbjct: 530 NH 531


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/560 (34%), Positives = 327/560 (58%), Gaps = 12/560 (2%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           L WN ++  +        AL +Y +M S     +++++P +LK+C +    + GR +H+ 
Sbjct: 30  LIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQ 89

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +        +VH +L+SMY + G ++ AR++FD    RD VS   +I+ YAS+G ++ A
Sbjct: 90  VLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSA 149

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++F E+ E     +V++WN +  G +  G ++  LEL   M       D    V  + A
Sbjct: 150 RKVFDEITER----DVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSA 205

Query: 320 CSHVGALKLGKEIHG----SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
           C+  G+++LG+++H           +     + NALI +YS+C D+  A+ LF+  + K 
Sbjct: 206 CAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKD 265

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++WN+++ GYTH +  +E+  LF+EM RSG  PN VT+ S+LP CA +  +  G+  H 
Sbjct: 266 VVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHV 325

Query: 436 YILRR--AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           YI ++   + NE   L  SL++MYA+ G +  A  VF+ M  R   ++ ++I G+ + G 
Sbjct: 326 YIDKKLKGVTNE-TSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGR 384

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A  LF  M  N+++PD +T V +LSACSHSGL+  G++ F+ MT  Y + P+LEH+ 
Sbjct: 385 ANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYG 444

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CM+DL G +GL  +A+E+I  MP  P   +W +LL AC+ H N  + E  A+KL++  PE
Sbjct: 445 CMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPE 504

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           NSG YVL++N+YA  G W+ +A+VR  +   G++K+PGC+ ++  +V   F++ D  + +
Sbjct: 505 NSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPR 564

Query: 674 AQEIYPLLGGLTELMKDAGY 693
            +EIY +L  +   +++AG+
Sbjct: 565 RREIYHMLEEMDVQLEEAGF 584



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 145/532 (27%), Positives = 237/532 (44%), Gaps = 83/532 (15%)

Query: 33  EHIMRINLL---ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           E I   NLL     L+  A   +   A E +  +R+ +  H     SF  ++  C K KA
Sbjct: 22  ETIQEPNLLIWNTMLRGHASSSDPVSALEMY--VRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 90  LAQGKQLHACAIALGL-------------------------------EKNPVLVPKLVTF 118
             +G+Q+HA  + LG                                 ++ V    L+T 
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           YAS   + +A  + +    R  + WN +I+ YV +G Y EAL ++K+M    +R D  T 
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199

Query: 179 PSVLKACGEMMDVDFGRVVHSCI---DACHEW--SLFVHNALVSMYGKFGQVDVARRLFD 233
            SV+ AC +   ++ GR VHS +   D  H +  SL + NAL+ +Y K G V+ A  LF+
Sbjct: 200 VSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFE 259

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
            +  +D VSWNT+I  Y    L+KEA  LF EM                   LR+G    
Sbjct: 260 GLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEM-------------------LRSGECPN 300

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH---GSAVRGCYGEYENVRNA 350
            + LLS                 L AC+H+GA+ +G+ IH      ++G   E  ++R +
Sbjct: 301 DVTLLSV----------------LPACAHLGAIDIGRWIHVYIDKKLKGVTNE-TSLRTS 343

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI MY++C D+  A+ +F     +S+ +WN+M+ G+     A  +  LF  M  + VEP+
Sbjct: 344 LIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPD 403

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            +T   +L  C+    L  G++    + +       L  +  ++++   SG   EA+ + 
Sbjct: 404 DITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMI 463

Query: 471 DLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             M    D V + SL+      G   +A    +++ K  I+P++     +LS
Sbjct: 464 HTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIK--IEPENSGSYVLLS 513



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 188/381 (49%), Gaps = 26/381 (6%)

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
           F  +  A  +F+ + E + + WNTM+  +AS      A +++V M   G   N  ++  +
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA----V 337
              C ++  F+   ++ +++      LD       +   +  G L+  +++  ++    V
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
             C         ALIT Y+   D R A  +F    E+ +++WN+M++GY      EE+  
Sbjct: 131 VSC--------TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALE 182

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM---FNEHLLLWNSLV 454
           LF+EM R+ V P+  T+ S++  CA+  +++ G++ H ++        F+  L + N+L+
Sbjct: 183 LFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALI 242

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           ++Y++ G V  A  +F+ +S +D V++ +LI GY      + AL LF+EM ++   P+ V
Sbjct: 243 DLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDV 302

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIY------GIFPQLEHFACMVDLYGRAGLLNKA 568
           T+++VL AC+H G +  G     R   +Y      G+  +      ++D+Y + G +  A
Sbjct: 303 TLLSVLPACAHLGAIDIG-----RWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAA 357

Query: 569 KEIITKMPYTPTSAMWATLLG 589
            ++   M Y   S+  A + G
Sbjct: 358 HQVFNSMLYRSLSSWNAMIFG 378


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/682 (31%), Positives = 355/682 (52%), Gaps = 44/682 (6%)

Query: 16  SQLEKFIPKKWKQPINNEHIMR--INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVV 73
           S+L  FIP    + + N  + R  ++    +   + +G   KA E F ++ +     D V
Sbjct: 317 SRLGNFIPA---EQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCV 373

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
             + A ++  C  V AL  GKQ H+ AI  G+  + +L   L+  Y   S    A     
Sbjct: 374 --TVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFL 431

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           ++     + WN+++  Y       E+  ++ QMQ   I  + FTYPS+L+ C  +  VD 
Sbjct: 432 STETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDL 491

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H+  +    +++++V + L+ MY K G++D                          
Sbjct: 492 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLD-------------------------- 525

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                 A ++F  ++E+    +V++W  +  G  +   F   L L   M+ Q  + D++ 
Sbjct: 526 -----HALKIFRRLKEK----DVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIG 576

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               + AC+ + AL  G++IH  A    Y +  +V NAL+++Y+RC  +R AY  F    
Sbjct: 577 FASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIF 636

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            K  I+WNS++SG+      EE+  LF +M ++G E N  T    +   A VAN++ GK+
Sbjct: 637 SKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQ 696

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  I++    +E   + N L+ +YA+ G + +A+  F  M  ++E+++ +++ GY   G
Sbjct: 697 IHAMIIKTGHDSE-TEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHG 755

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G  AL LFE+M +  + P+HVT V VLSACSH GLV EG K F+ M  ++G+ P+ EH+
Sbjct: 756 HGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHY 815

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           AC+VDL GR+GLL++A+  + +MP  P + +  TLL AC +H+N  IGE+AA  LLE  P
Sbjct: 816 ACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEP 875

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           ++S  YVL++NMYA TG W    + R  M+D GV+K PG +W++  N    F   D  + 
Sbjct: 876 KDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHP 935

Query: 673 QAQEIYPLLGGLTELMKDAGYV 694
              +IY  L  L EL  + GY+
Sbjct: 936 NVDKIYEYLRDLNELAAENGYI 957



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 150/575 (26%), Positives = 255/575 (44%), Gaps = 83/575 (14%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
            + G +LH   + +G     VL  +L+  Y +F   + A  + +   +R    WN ++  
Sbjct: 84  FSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHR 143

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH---- 205
           +V        L ++++M   +++ D  TY  VL+ CG       G V   C++  H    
Sbjct: 144 FVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG------GDVPFHCVEKIHARTI 197

Query: 206 ----EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               E SLFV N L+ +Y K G ++ A+++FD + +RD+VSW  M+S  +  G  +EA  
Sbjct: 198 THGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVL 257

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCL----------------------------------- 286
           LF +M   GV      ++++   C                                    
Sbjct: 258 LFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYS 317

Query: 287 RTGNFKGVLELLSRM--------------RTQETYLDSV----------------ATVIG 316
           R GNF    ++ + M               +Q+ Y D                   TV  
Sbjct: 318 RLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVAS 377

Query: 317 L-GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
           L  ACS VGAL +GK+ H  A++        +  AL+ +Y +C D++ A+  F  T  ++
Sbjct: 378 LLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETEN 437

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++ WN ML  Y  LD   ES  +F +M   G+EPN  T  SIL  C+ +  +  G++ H 
Sbjct: 438 VVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHT 497

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            +L+   F  ++ + + L++MYA+ GK+  A  +F  +  +D V++T++IAGY    +  
Sbjct: 498 QVLKTG-FQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFA 556

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL LF+EM    I  D++   + +SAC+    + +GQ Q      + G    L     +
Sbjct: 557 EALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQ-QIHAQACVSGYSDDLSVGNAL 615

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           V LY R G +  A     K+ ++  +  W +L+  
Sbjct: 616 VSLYARCGKVRDAYFAFDKI-FSKDNISWNSLISG 649



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 141/517 (27%), Positives = 237/517 (45%), Gaps = 38/517 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+ ++  C KV+    G+QLH   +  G      +   LVT Y+    +  A  +     
Sbjct: 274 FSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAML 333

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + +N LIS   + G+  +AL ++K+M    ++ D  T  S+L AC  +  +  G+ 
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ 393

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            HS  I A     + +  AL+ +Y K   +  A   F      + V WN M+ AY     
Sbjct: 394 FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDN 453

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             E+F++F +MQ EG+E N  T+ +I    LRT                           
Sbjct: 454 LNESFKIFTQMQMEGIEPNQFTYPSI----LRT--------------------------- 482

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
               CS + A+ LG++IH   ++  +     V + LI MY++   L HA  +F+   EK 
Sbjct: 483 ----CSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKD 538

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W +M++GY   +   E+  LF+EM   G+  + +  AS +  CA +  L  G++ H 
Sbjct: 539 VVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHA 598

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
                  +++ L + N+LV +YAR GKV +A   FD +  +D +++ SLI+G+   G   
Sbjct: 599 QACVSG-YSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCE 657

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL LF +M+K   + +  T    +SA ++   V  G KQ   M    G   + E    +
Sbjct: 658 EALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLG-KQIHAMIIKTGHDSETEVSNVL 716

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           + LY + G ++ A+    +MP     +  A L G  Q
Sbjct: 717 ITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQ 753



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 66/358 (18%)

Query: 231 LFDKMLERDAVSWNTMIS-AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            F K LE      NT +S AY++             M+E GV  N  T+  +  GCL +G
Sbjct: 28  FFQKFLEH-----NTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSG 82

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
            F    +L  +             ++ +G C+ V   +                      
Sbjct: 83  WFSDGWKLHGK-------------ILKMGFCAEVVLCE---------------------- 107

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
            L+ +Y    DL  A  +F     + +  WN +L  +     A     LFR M +  V+P
Sbjct: 108 RLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKP 167

Query: 410 NYVTIASILPLCARVANLQHGKE--FHCY--ILRRAM---FNEHLLLWNSLVEMYARSGK 462
           +  T A +L  C        G +  FHC   I  R +   +   L + N L+++Y ++G 
Sbjct: 168 DERTYAGVLRGCG-------GGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGF 220

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  AK VFD + +RD V++ ++++G    G    A+ LF +M+ + + P      +VLSA
Sbjct: 221 LNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSA 280

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQ---LEHFAC--MVDLYGRAGLLNKAKEIITKM 575
           C+     VE  K  E++  +  +  Q   LE + C  +V LY R G    A+++   M
Sbjct: 281 CTK----VEFYKVGEQLHGL--VLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAM 332


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/663 (32%), Positives = 356/663 (53%), Gaps = 43/663 (6%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-SFSLYNNACFLVENSNIRYP--LPWNL 145
           +L+Q +Q HA  + L L  +  L   L++FYA + SL      L  +S++ +P    ++ 
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSS 74

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
           LI  + R   +   L  +  +   R+  D F  PS +K+C  +  +D G+ +H+   A  
Sbjct: 75  LIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASG 134

Query: 206 EWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
             +   V ++L  MY K  ++  AR+LFD+M +RD V W+ MI+ Y+  GL +EA +LF 
Sbjct: 135 FLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFG 194

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           EM+  GVE N+++WN +  G    G +   + +   M  Q  + D       L A   + 
Sbjct: 195 EMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLE 254

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            + +G ++HG  ++   G  + V +A++ MY +C  ++    +F    E  I + N+ L+
Sbjct: 255 DVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLT 314

Query: 385 GYTH------------------------------LDCAE-----ESAFLFREMFRSGVEP 409
           G +                                 C++     E+  LFR+M   GVEP
Sbjct: 315 GLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEP 374

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N VTI S++P C  ++ L HGKE HC+ LRR +F++ + + ++L++MYA+ G++  A+  
Sbjct: 375 NAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDD-VYVGSALIDMYAKCGRIQLARRC 433

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           FD MS  + V++ +++ GY + G+ +  +++F  M ++  KPD VT   VLSAC+ +GL 
Sbjct: 434 FDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLT 493

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG + +  M+  +GI P++EH+AC+V L  R G L +A  II +MP+ P + +W  LL 
Sbjct: 494 EEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLS 553

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           +C++H N  +GE AAEKL    P N G Y+L++N+YA+ G WD+  ++R  M+  G+RK 
Sbjct: 554 SCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKN 613

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIV 706
           PG +W++ G+     L  D S+ Q ++I   L  L   MK +GY+ K  F     EE+  
Sbjct: 614 PGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDK 673

Query: 707 EEI 709
           E+I
Sbjct: 674 EQI 676



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 213/475 (44%), Gaps = 63/475 (13%)

Query: 57  FEAFTRIRITAASHDV--VLDSFAHI---------------IFCCGKVKALAQGKQLHAC 99
           F   + I   A SH    VL +F+H+               I  C  ++AL  G+QLHA 
Sbjct: 70  FSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAF 129

Query: 100 AIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR------- 152
           A A G   + ++   L   Y       +A  L +    R  + W+ +I+ Y R       
Sbjct: 130 AAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEA 189

Query: 153 ----------------------------DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA 184
                                       +GFY EA+ +++ M  +    D  T   VL A
Sbjct: 190 KELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPA 249

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
            G + DV  G  VH   I        FV +A++ MYGK G V    R+FD++ E +  S 
Sbjct: 250 VGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSL 309

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           N  ++  +  G+   A ++F + +++ +E+NV+TW +I   C + G     LEL   M+ 
Sbjct: 310 NAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQA 369

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
                ++V     + AC ++ AL  GKEIH  ++R    +   V +ALI MY++C  ++ 
Sbjct: 370 YGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQL 429

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           A   F   +  ++++WN+++ GY     A+E+  +F  M +SG +P+ VT   +L  CA+
Sbjct: 430 ARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQ 489

Query: 424 VANLQHGKEFHCYILRRAMFNEH-----LLLWNSLVEMYARSGKVPEAKSVFDLM 473
               + G  + CY    +M  EH     +  +  LV + +R GK+ EA S+   M
Sbjct: 490 NGLTEEG--WRCY---NSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEM 539



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 133/342 (38%), Gaps = 57/342 (16%)

Query: 11  NGLSVSQLEKFIPKKWKQPINNEHIMRINLL---ETLKDFAGRGNLSKAFEAFTRIRITA 67
           NG+  + LE F   K+K     +  M +N++     +   +  G   +A E F  ++   
Sbjct: 319 NGMVDTALEVF--NKFK-----DQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYG 371

Query: 68  ASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127
              + V  +   +I  CG + AL  GK++H  ++  G+  +  +   L+  YA       
Sbjct: 372 VEPNAV--TIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQL 429

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
           A    +  +    + WN ++  Y   G   E + ++  M     + D  T+  VL AC +
Sbjct: 430 ARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQ 489

Query: 188 MMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWN 244
               + G   ++ +   H  E  +  +  LV++  + G+++ A  +  +M  E DA  W 
Sbjct: 490 NGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWG 549

Query: 245 TMISA----------------------------------YASKGLWKEAFQLFVEMQEEG 270
            ++S+                                  YASKGLW E  ++   M+ +G
Sbjct: 550 ALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKG 609

Query: 271 VEVNV-ITW-------NTIAGGCLRTGNFKGVLELLSRMRTQ 304
           +  N   +W       + +  G       K +LE L ++  Q
Sbjct: 610 LRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQ 651


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/658 (33%), Positives = 354/658 (53%), Gaps = 39/658 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G++S A E F  +R +    +    + A  +        L  G QLH  A+  
Sbjct: 219 MDGYVKAGSVSSAVELFGDMRASGCEPNFA--TLACFLSVSATESDLFFGVQLHTLAVKY 276

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE    +   LV+ YA     ++   L         + WN +IS  V++GF  +AL ++
Sbjct: 277 GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLF 336

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
             MQ   IR D+ T  S+L A  ++   + G+ +H  I   C    +F+ +ALV +Y K 
Sbjct: 337 CDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC 396

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V +A+ ++D     D V  +TMIS Y   G+ +EA ++F  + E+G+  N +      
Sbjct: 397 RAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAV------ 450

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                      ++A+V  L AC+ + A+KLG+E+H  A++  Y 
Sbjct: 451 ---------------------------AIASV--LPACASMAAMKLGQELHSYALKNAYE 481

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V +AL+ MY++C  L  ++ +F   + K  +TWNSM+S +      EE+  LFREM
Sbjct: 482 GRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM 541

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              GV+ + VTI+S+L  CA +  + +GKE H  +++  +    L   ++L++MY + G 
Sbjct: 542 CMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPI-RADLFAESALIDMYGKCGN 600

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  VF+ M  ++EV++ S+IA YG  G  + ++ L   M +   K DHVT +A++SA
Sbjct: 601 LEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSA 660

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C+H+G V EG + F  MT  Y I P++EHFACMVDLY RAG L+KA E+I  MP+ P + 
Sbjct: 661 CAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAG 720

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W  LL AC++HRN  + E A+++L +  P NSGYYVL++N+ A  G WD ++KVR  M+
Sbjct: 721 IWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMK 780

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC 700
           D  V+KIPG +WVD  N    F+  D S+  +++IY  L  +   +++ GY+   + C
Sbjct: 781 DTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELREEGYIPMPDLC 838



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 138/501 (27%), Positives = 244/501 (48%), Gaps = 36/501 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F +++  C  + A+A G+ +H  A  LGL+ +  +   L+  YA+  L  +A  + +  
Sbjct: 148 TFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM 207

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN+++  YV+ G  + A+ ++  M++     +  T    L       D+ FG 
Sbjct: 208 AERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGV 267

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            +H+               L   YG   +V VA               NT++S YA    
Sbjct: 268 QLHT---------------LAVKYGLESEVAVA---------------NTLVSMYAKCKC 297

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             + ++LF  M  +    +++TWN +  GC++ G     L L   M+      DSV  V 
Sbjct: 298 LDDGWKLFGLMPRD----DLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVS 353

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L A + +     GKE+HG  VR C      + +AL+ +Y +C+ +R A  ++  +    
Sbjct: 354 LLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAID 413

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++  ++M+SGY     ++E+  +FR +   G+ PN V IAS+LP CA +A ++ G+E H 
Sbjct: 414 VVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHS 473

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y L+ A +     + ++L++MYA+ G++  +  +F  +S +DEVT+ S+I+ +   GE  
Sbjct: 474 YALKNA-YEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPE 532

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL LF EM    +K  +VT+ +VLSAC+    +  G K+   +     I   L   + +
Sbjct: 533 EALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG-KEIHGVVIKGPIRADLFAESAL 591

Query: 556 VDLYGRAGLLNKAKEIITKMP 576
           +D+YG+ G L  A  +   MP
Sbjct: 592 IDMYGKCGNLEWAHRVFESMP 612



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 233/500 (46%), Gaps = 46/500 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLE-KNPVLVPKLVTFYASFSLYNNACFL---VENSNIRY 139
           C     L+ G Q+H  A+  GL   +  L  +LV  Y     + +A  +   +       
Sbjct: 49  CVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAAC 108

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
            LPWN LI      G Y  AL  Y +M         D+ T+P V+K+C  +  +  GR+V
Sbjct: 109 ALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLV 168

Query: 198 HSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H        +  +FV +AL+ MY   G +  AR++FD M ERD V WN M+  Y   G  
Sbjct: 169 HRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSV 228

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
             A +LF +M+  G E                 NF  +   LS   T+            
Sbjct: 229 SSAVELFGDMRASGCE----------------PNFATLACFLSVSATESD---------- 262

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
                    L  G ++H  AV+        V N L++MY++CK L   + LF +     +
Sbjct: 263 ---------LFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           +TWN M+SG       +++  LF +M +SG+ P+ VT+ S+LP    +     GKE H Y
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           I+R  +  + + L ++LV++Y +   V  A+SV+D     D V  +++I+GY + G  + 
Sbjct: 374 IVRNCVHMD-VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQE 432

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE-RMTSIYGIFPQLEHFACM 555
           A+K+F  + +  I+P+ V + +VL AC+    +  GQ+     + + Y     +E  + +
Sbjct: 433 AVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE--SAL 490

Query: 556 VDLYGRAGLLNKAKEIITKM 575
           +D+Y + G L+ +  I +K+
Sbjct: 491 MDMYAKCGRLDLSHYIFSKI 510



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           ++L  C   ++L  G + H   +   +      L   LV MY  + +  +A +VF  + R
Sbjct: 44  AVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPR 103

Query: 476 RD---EVTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSACSHSGLVV 530
                 + +  LI G  + G+ R AL  + +M  + +   PD  T   V+ +C+  G + 
Sbjct: 104 GAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            G +   R     G+   +   + ++ +Y   GLL  A+++   M
Sbjct: 164 LG-RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM 207


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/627 (34%), Positives = 337/627 (53%), Gaps = 38/627 (6%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           D F  ++  C ++++L QG+++HA  +  G++ N  L   L++ YA      +A  + ++
Sbjct: 48  DVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDS 107

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
              R  + W  +I  +V      EA   Y+ M+    + D  T+ S+L A      +  G
Sbjct: 108 IRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLG 167

Query: 195 RVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + VH   ++A  E    V  +LV MY K G +  AR +FD++ E++ V+W  +I+ YA +
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G    A +L   MQ+  V  N IT+ +I                                
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASI-------------------------------- 255

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L  C+   AL+ GK++H   ++  YG    V N+LITMY +C  L  A  LF     
Sbjct: 256 ---LQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPH 312

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + ++TW +M++GY  L   +E+  LFR M + G++P+ +T  S+L  C+  A LQ GK  
Sbjct: 313 RDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRI 372

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ-G 492
           H  ++  A +N  + L ++LV MYA+ G + +A  VF+ MS R+ V +T++I G   Q G
Sbjct: 373 HQQLV-HAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHG 431

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
             R AL+ F++M K  IKPD VT  +VLSAC+H GLV EG+K F  M   YGI P +EH+
Sbjct: 432 RCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHY 491

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +C VDL GRAG L +A+ +I  MP+ P  ++W  LL AC++H +   GE AAE +L+  P
Sbjct: 492 SCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDP 551

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           ++ G YV ++++YAA G ++   KVR  M    V K PG +W++       F V+D S+ 
Sbjct: 552 DDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHP 611

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEF 699
           ++++IY  LG LTE +K+ GYV    F
Sbjct: 612 ESEQIYVELGKLTEQIKEMGYVPDTRF 638



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 223/452 (49%), Gaps = 44/452 (9%)

Query: 147 ISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DA 203
           +S+  + G   EAL +   M  Q  R+  D F    +L+ C  +  ++ GR VH+ I  +
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFR--GLLQECARLRSLEQGREVHAAILKS 76

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             + + ++ N L+SMY K G +  ARR+FD + +R+ VSW  MI A+ +     EAF+ +
Sbjct: 77  GIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCY 136

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
             M+  G + + +T+ ++                                   L A ++ 
Sbjct: 137 ETMKLAGCKPDKVTFVSL-----------------------------------LNAFTNP 161

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L+LG+++H   V         V  +L+ MY++C D+  A ++F    EK+++TW  ++
Sbjct: 162 ELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLI 221

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           +GY      + +  L   M ++ V PN +T ASIL  C   A L+HGK+ H YI++   +
Sbjct: 222 AGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSG-Y 280

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
              L + NSL+ MY + G + EA+ +F  +  RD VT+T+++ GY   G    A+ LF  
Sbjct: 281 GRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRR 340

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI-YGIFPQLEHFACMVDLYGRA 562
           M +  IKPD +T  +VL++CS    + EG++  +++    Y +   L+  + +V +Y + 
Sbjct: 341 MQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKC 398

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           G ++ A  +  +M      A  A + G C  H
Sbjct: 399 GSMDDASLVFNQMSERNVVAWTAIITGCCAQH 430



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 205/429 (47%), Gaps = 48/429 (11%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           AG  NL +AF+ +  +++     D V  +F  ++      + L  G+++H   +  GLE 
Sbjct: 125 AGNKNL-EAFKCYETMKLAGCKPDKV--TFVSLLNAFTNPELLQLGQKVHMEIVEAGLEL 181

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
            P +   LV  YA     + A  + +    +  + W LLI+ Y + G    AL + + MQ
Sbjct: 182 EPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQ 241

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVD 226
              +  +  T+ S+L+ C     ++ G+ VH   I + +   L+V N+L++MY K G ++
Sbjct: 242 QAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLE 301

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            AR+LF  +  RD V+W  M++ YA  G   EA  LF  MQ++G++ + +T+ ++     
Sbjct: 302 EARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSV----- 356

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                         L +CS    L+ GK IH   V   Y     
Sbjct: 357 ------------------------------LTSCSSPAFLQEGKRIHQQLVHAGYNLDVY 386

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG--YTHLDCAEESAFLFREMFR 404
           +++AL++MY++C  +  A ++F   +E++++ W ++++G    H  C E   + F +M +
Sbjct: 387 LQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEY-FDQMKK 445

Query: 405 SGVEPNYVTIASILPLCARVANLQHG-KEFHCYILRRAM--FNEHLLLWNSLVEMYARSG 461
            G++P+ VT  S+L  C  V  ++ G K F    L   +    EH   ++  V++  R+G
Sbjct: 446 QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH---YSCFVDLLGRAG 502

Query: 462 KVPEAKSVF 470
            + EA++V 
Sbjct: 503 HLEEAENVI 511


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/698 (32%), Positives = 357/698 (51%), Gaps = 54/698 (7%)

Query: 7   RLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRIT 66
           +L ++  SV++  +   K      +N+ ++  N++  +  +A RG   +AF  FT ++  
Sbjct: 87  KLYVHCGSVNEARRLFDK-----FSNKSVVSWNVM--ISGYAHRGLGQEAFNLFTLMQQE 139

Query: 67  AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN 126
               D    +F  I+  C    AL  G+++H   +  GL  N  +   L++ YA      
Sbjct: 140 GLEPDKF--TFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVR 197

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
           +A  + +    R  + W  L   Y   G+  E+L  Y  M    +R    TY +VL ACG
Sbjct: 198 DARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACG 257

Query: 187 EMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
            +  ++ G+ +H+ I ++ H   + V  AL  MY K G V  AR +F+ +  RD      
Sbjct: 258 SLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRD------ 311

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
                                        VI WNT+ GG + +G  +    +  RM  + 
Sbjct: 312 -----------------------------VIAWNTMIGGLVDSGQLEEAHGMFHRMLKEC 342

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRH 363
              D V  +  L AC+  G L  GKEIH  AV+   G   +VR  NALI MYS+   ++ 
Sbjct: 343 VAPDRVTYLAILSACARPGGLACGKEIHARAVKD--GLVSDVRFGNALINMYSKAGSMKD 400

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAE--ESAFLFREMFRSGVEPNYVTIASILPLC 421
           A  +F    ++ +++W +++ GY   DC +  ES   F++M + GVE N +T   +L  C
Sbjct: 401 ARQVFDRMPKRDVVSWTALVGGYA--DCGQVVESFSTFKKMLQQGVEANKITYMCVLKAC 458

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
           +    L+ GKE H  +++  +F + L + N+L+ MY + G V +A  V + MS RD VT+
Sbjct: 459 SNPVALKWGKEIHAEVVKAGIFAD-LAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTW 517

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
            +LI G    G G  AL+ FE M   +++P+  T V V+SAC    LV EG++QF  M  
Sbjct: 518 NTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRK 577

Query: 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGE 601
            YGI P  +H+ACMVD+  RAG L +A+++I  MP+ P++AMW  LL AC+ H N  IGE
Sbjct: 578 DYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGE 637

Query: 602 WAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVF 661
            AAE+ L+  P+N+G YV ++ +YAA G W  +AK+R  M++ GV+K PG +W++     
Sbjct: 638 QAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEV 697

Query: 662 SPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
             F+  D S+ + +EIY  L  LT+ +K  GYV    F
Sbjct: 698 HSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRF 735



 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/520 (29%), Positives = 253/520 (48%), Gaps = 41/520 (7%)

Query: 74  LDSFAHI--IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           +DS+ ++  +  C K K LA GKQ+H   +  G++ N  ++  L+  Y      N A  L
Sbjct: 42  VDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRL 101

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +  + +  + WN++IS Y   G   EA  ++  MQ   +  D FT+ S+L AC     +
Sbjct: 102 FDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAAL 161

Query: 192 DFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           ++GR VH   ++A    +  V NAL+SMY K G V  ARR+FD M  RD VSW T+  AY
Sbjct: 162 NWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 221

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           A  G  +E+ + +  M +EGV  + IT+  +                             
Sbjct: 222 AESGYAQESLKTYHAMLQEGVRPSRITYMNV----------------------------- 252

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 L AC  + AL+ GK+IH   V   +     V  AL  MY +C  ++ A  +F+ 
Sbjct: 253 ------LSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFEC 306

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              + +I WN+M+ G       EE+  +F  M +  V P+ VT  +IL  CAR   L  G
Sbjct: 307 LPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACG 366

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           KE H   ++  + ++ +   N+L+ MY+++G + +A+ VFD M +RD V++T+L+ GY  
Sbjct: 367 KEIHARAVKDGLVSD-VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYAD 425

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G+   +   F++M +  ++ + +T + VL ACS+  + ++  K+        GIF  L 
Sbjct: 426 CGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNP-VALKWGKEIHAEVVKAGIFADLA 484

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
               ++ +Y + G +  A  +   M  T     W TL+G 
Sbjct: 485 VANALMSMYFKCGSVEDAIRVSEGMS-TRDVVTWNTLIGG 523



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 226/459 (49%), Gaps = 51/459 (11%)

Query: 144 NLLISLYVR-----------DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +LLIS + R           DG+YA A  V + +  +  + D++ Y  +L++C +  D+ 
Sbjct: 3   SLLISRWSRVDKSSMIPTSTDGWYAPAD-VLQYLHQKGSQVDSYDYVKLLQSCVKAKDLA 61

Query: 193 FGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G+ VH  I     + ++++ N L+ +Y   G V+ ARRLFDK   +  VSWN MIS YA
Sbjct: 62  VGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYA 121

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
            +GL +EAF LF  MQ+EG+E +  T+ +I                              
Sbjct: 122 HRGLGQEAFNLFTLMQQEGLEPDKFTFVSI------------------------------ 151

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                L ACS   AL  G+E+H   +         V NALI+MY++C  +R A  +F   
Sbjct: 152 -----LSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAM 206

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           A +  ++W ++   Y     A+ES   +  M + GV P+ +T  ++L  C  +A L+ GK
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGK 266

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  I+     ++ + +  +L +MY + G V +A+ VF+ +  RD + + ++I G    
Sbjct: 267 QIHAQIVESEHHSD-VRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDS 325

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G+   A  +F  M K  + PD VT +A+LSAC+  G +  G++   R     G+   +  
Sbjct: 326 GQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK-DGLVSDVRF 384

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
              ++++Y +AG +  A+++  +MP     + W  L+G 
Sbjct: 385 GNALINMYSKAGSMKDARQVFDRMPKRDVVS-WTALVGG 422


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/727 (30%), Positives = 374/727 (51%), Gaps = 69/727 (9%)

Query: 14  SVSQLEKFIPKKWKQPINNEHIMRINLLE----------------------------TLK 45
           S+ +L + IP   K  + NEH+ +  L+                              LK
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 46  DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
            +A   +L  A     R+R        V+ +F +++  CG    L +GK++H   I    
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVK--PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSF 178

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             N   +  +V  YA     ++A  + +    R  + WN +I+ + ++GF  +AL +  +
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLR 238

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           MQ    R D+ T  +VL A  ++  +  G+ +H   I A     + +  AL  MY K G 
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           V+ AR +FD M ++  VSWN+M+  Y   G  ++A  +F +M EEG++   +T       
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT------- 351

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                    ++E                    L AC+ +G L+ GK +H    +   G  
Sbjct: 352 ---------IME-------------------ALHACADLGDLERGKFVHKFVDQLNLGSD 383

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
            +V N+LI+MYS+CK +  A  +F     ++ ++WN+M+ GY       E+   F EM  
Sbjct: 384 ISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKS 443

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G++P+  T+ S++P  A ++  +H K  H  I+R  + ++++ +  +LV+MY++ G + 
Sbjct: 444 LGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCL-DKNIFVTTALVDMYSKCGAIH 502

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A+ +FD++S R  +T+ ++I GYG  G GR AL LF++M K  ++P+ +T ++V+SACS
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           HSGLV EG + F+ M   YG+ P ++H+  MVDL GRAG + +A + I  MP +P   ++
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
               GAC+IH+N  +GE AA+KL E  P+  GY+VL+AN+YA+T  W K+A+VR  M   
Sbjct: 623 GAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC--SE 702
           G++K PGC+ V+  N    F    T++ Q++ IY  L  L   +K AGYV         E
Sbjct: 683 GLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVE 742

Query: 703 EEIVEEI 709
           +++ E++
Sbjct: 743 DDVQEQL 749



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 86/202 (42%), Gaps = 15/202 (7%)

Query: 415 ASILPLCARVANLQHGKEFHCYI---LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           A +L LC  +      KE H  I   ++  ++NEHL     LV ++++ G + EA  VF+
Sbjct: 53  AVLLELCTSM------KELHQIIPLVIKNGLYNEHLF-QTKLVSLFSKYGSINEAARVFE 105

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +  + +  Y +++ GY        AL     M  + +KP       +L  C  +  +  
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKR 165

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G++   ++ +       +     +V++Y +   ++ A ++  +MP     + W T++   
Sbjct: 166 GKEIHGQLIT-NSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVS-WNTIIAGF 223

Query: 592 QIHRNTGIGEWAAEKLLETRPE 613
                 G  + A E +L  + E
Sbjct: 224 S---QNGFAKKALELVLRMQDE 242


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/592 (35%), Positives = 321/592 (54%), Gaps = 11/592 (1%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYA--SFSLYNNACFLVENSNIRYPLPWNL 145
           K+    KQ+H+  I  GL      + KL+ F A   F   + A  L E+        WN 
Sbjct: 43  KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNT 102

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           +I           A+  Y +M    +  +++T+P +LK+C ++     G+ +H   +   
Sbjct: 103 MIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLG 162

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            E   FVH +L++MY + G++  A  +F K   RDAVS+  +I+ Y  +G   +A +LF 
Sbjct: 163 LESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFE 222

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           E+       + ++WN +  G  ++G F+  L     M+      +    V  L AC+  G
Sbjct: 223 EIPVR----DAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSG 278

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           +L+LG  +         G    + NALI MYS+C DL  A  LF+   EK II+WN M+ 
Sbjct: 279 SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIG 338

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY+H++  +E+  LFR+M +S VEPN VT  SILP CA +  L  GK  H YI ++ +  
Sbjct: 339 GYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGL 398

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            +  LW SL++MYA+ G +  AK VF  M  +   ++ ++I+G  + G   +AL+LF +M
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
                +PD +T V VLSACSH+GLV  G++ F  M   Y I P+L+H+ CM+DL GRAGL
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGL 518

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
            ++A+ ++  M   P  A+W +LLGAC++H N  +GE+AA+ L E  PEN G YVL++N+
Sbjct: 519 FDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNI 578

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGC----AWVDAGNVFSPFLVDDTSNV 672
           YA  G WD +A++RT + D G++K          +D      P  V DTS V
Sbjct: 579 YATAGRWDDVARIRTKLNDKGMKKXQDIYKMLDEIDQSFGERPGXVPDTSEV 630



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 221/480 (46%), Gaps = 71/480 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA--------------- 120
           +F  ++  C KV A  +GKQ+H   + LGLE +P +   L+  YA               
Sbjct: 134 TFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKS 193

Query: 121 ------SFSL----------YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
                 SF+            ++A  L E   +R  + WN +I+ Y + G + EAL  ++
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           +M+   +  +  T  +VL AC +   ++ G  V S I D     +L + NAL+ MY K G
Sbjct: 254 EMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCG 313

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +D AR LF+ + E+D +SWN MI  Y+    +KEA  LF +MQ+  VE N +T+ +I  
Sbjct: 314 DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSI-- 371

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG- 342
                                            L AC+++GAL LGK IH    +   G 
Sbjct: 372 ---------------------------------LPACAYLGALDLGKWIHAYIDKKFLGL 398

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
              ++  +LI MY++C ++  A  +F     KS+ +WN+M+SG      A  +  LFR+M
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              G EP+ +T   +L  C+    ++ G++    ++     +  L  +  ++++  R+G 
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGL 518

Query: 463 VPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             EA+++   M  + D   + SL+    +   G V L  F   +  +++P++     +LS
Sbjct: 519 FDEAEALMKNMEMKPDGAIWGSLLGACRVH--GNVELGEFAAKHLFELEPENPGAYVLLS 576



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 162/389 (41%), Gaps = 55/389 (14%)

Query: 47  FAGRGNLSKAFEAFTRI-RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           +A  G   +A   F  + R   A ++    +   ++  C +  +L  G  + +     GL
Sbjct: 239 YAQSGRFEEALAFFQEMKRANVAPNE---STMVTVLSACAQSGSLELGNWVRSWIEDHGL 295

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             N  LV  L+  Y+     + A  L E    +  + WN++I  Y     Y EAL ++++
Sbjct: 296 GSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRK 355

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID----ACHEWSLFVHNALVSMYGK 221
           MQ   +  ++ T+ S+L AC  +  +D G+ +H+ ID         SL+   +L+ MY K
Sbjct: 356 MQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWT--SLIDMYAK 413

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A+++F  M  +   SWN MIS  A  G    A +LF +M++EG E + IT    
Sbjct: 414 CGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDIT---- 469

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                    F GVL                       ACSH G ++LG++   S V   Y
Sbjct: 470 ---------FVGVLS----------------------ACSHAGLVELGRQCFSSMVED-Y 497

Query: 342 GEYENVRN--ALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLDCAEESAFL 398
                +++   +I +  R      A  L K M  +     W S+L         E   F 
Sbjct: 498 DISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFA 557

Query: 399 FREMFRSGVEPN----YVTIASILPLCAR 423
            + +F   +EP     YV +++I     R
Sbjct: 558 AKHLFE--LEPENPGAYVLLSNIYATAGR 584


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/596 (35%), Positives = 322/596 (54%), Gaps = 41/596 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S   ++  CG  +    G  +HA A+ +GL     L   LV  Y  F     +  + +  
Sbjct: 222 SLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGM 281

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN  I  ++  GFY + L ++++M    +   + T  S+L A  E+   D GR
Sbjct: 282 LEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGR 341

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   I    +  +FV N+LV MY KFG ++ A  +F++M +R+ VSWN MI+     G
Sbjct: 342 EVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNG 401

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EAF+L  +MQ+ G   N IT   +                                 
Sbjct: 402 AETEAFRLVTDMQKSGECPNSITLVNV--------------------------------- 428

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ + +LK+GK+IH  ++R        + NALI MYS+C  L  A  +F+  +EK
Sbjct: 429 --LPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFE-RSEK 485

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             +++N+++ GY+      ES  LF++M   G++ + V+    L  C  ++  +HGKE H
Sbjct: 486 DDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIH 545

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
           C ++RR + + H  L NSL+++Y + G +  A  +F+ ++++D  ++ ++I GYG+ G+ 
Sbjct: 546 CVLVRR-LLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQI 604

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
            +A +LFE M  + +  DHV+ +AVL+ACSH GLV +G+K F +M +   I PQ  H+AC
Sbjct: 605 DIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVA-QNIEPQQMHYAC 663

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL GRAG L+K  EII  MP+   S +W  LLGAC+IH N  + +WAAE L E +PE+
Sbjct: 664 MVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEH 723

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV--DAGNVFSPFLVDD 668
           SGYY L+ NMYA TG W++  K+R  M+   V+K P  +WV    GN    FLV D
Sbjct: 724 SGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 779



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 217/488 (44%), Gaps = 45/488 (9%)

Query: 94  KQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENS--NIRYPLPWNLLISLY 150
           ++ HA ++  G L  +  L   L+  YA+ S   +A  ++ +    +R    WN L    
Sbjct: 33  RRAHAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRAL 92

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF 210
                 +EAL VY  M    +R D+ T+P             F     +   A  E    
Sbjct: 93  SSASLPSEALRVYNLMLRSAVRPDDRTFP-------------FALHAAAAAVASAE---- 135

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLER----DAVSWNTMISAYASKGLWKEAFQLFVEM 266
                          D    L    L R    D  + NT+++ YA+ G   +A ++F EM
Sbjct: 136 ---------------DKGLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEM 180

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
            E     +V++WN++    L  G F      L  M      L+  + V  + AC      
Sbjct: 181 PER----DVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEE 236

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           K G  IH  AV+       N+ NAL+ MY +  D+  +  +F    E++ ++WNS +  +
Sbjct: 237 KFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCF 296

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
            +     +   +FR+M    V P  +T++S+LP    + +   G+E H Y ++RAM +  
Sbjct: 297 LNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAM-DLD 355

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           + + NSLV+MYA+ G + +A ++F+ M  R+ V++ ++IA     G    A +L  +M K
Sbjct: 356 IFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQK 415

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
           +   P+ +T+V VL AC+    +  G KQ    +   G+   L     ++D+Y + G L+
Sbjct: 416 SGECPNSITLVNVLPACARMASLKMG-KQIHAWSIRRGLMFDLFISNALIDMYSKCGQLS 474

Query: 567 KAKEIITK 574
            A+ I  +
Sbjct: 475 LARNIFER 482



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 14/258 (5%)

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK--SIITWNSML 383
           L L +    S V G       +  AL+  Y+   DL  A ++ +    +  S   WNS+ 
Sbjct: 30  LALRRAHAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLS 89

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVT--IASILPLCARVANLQHGKEFHCYILRRA 441
              +      E+  ++  M RS V P+  T   A      A  +    G E H   LRR 
Sbjct: 90  RALSSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRG 149

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
              + +   N+LV  YA  GK  +A+ VFD M  RD V++ SL++ + + G    A +  
Sbjct: 150 HLAD-VFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRAL 208

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF----ERMTSIYGIFPQLEHFACMVD 557
             M ++    +  ++V+V+ AC       E +++F      +    G+   +     +VD
Sbjct: 209 VSMMRSGFPLNVASLVSVVPACG-----TEQEEKFGLSIHALAVKVGLNTMVNLANALVD 263

Query: 558 LYGRAGLLNKAKEIITKM 575
           +YG+ G +  + ++   M
Sbjct: 264 MYGKFGDVEASMQVFDGM 281


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/670 (33%), Positives = 355/670 (52%), Gaps = 45/670 (6%)

Query: 28  QPINNEHIMRINLL--ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCG 85
           +PI++    ++N+L    LK FA   +L KA + F R+R      + V+ +F +++  CG
Sbjct: 93  EPIDS----KLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV--EPVVYNFTYLLKVCG 146

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
               L  GK++H   +  G   +   +  L   YA     N A  + +    R  + WN 
Sbjct: 147 DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNT 206

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           +++ Y ++G    AL + K M    ++    T  SVL A   +  +  G+ +H   + + 
Sbjct: 207 IVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG 266

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            +  + +  ALV MY K G ++ AR+LFD MLER+ VSWN+MI AY      KEA  +F 
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           +M +EGV+                                      V+ +  L AC+ +G
Sbjct: 327 KMLDEGVKPT-----------------------------------DVSVMGALHACADLG 351

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L+ G+ IH  +V        +V N+LI+MY +CK++  A  +F     +++++WN+M+ 
Sbjct: 352 DLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMIL 411

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           G+       ++   F +M    V+P+  T  S++   A ++   H K  H  ++R  + +
Sbjct: 412 GFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCL-D 470

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
           +++ +  +LV+MYA+ G +  A+ +FD+MS R   T+ ++I GYG  G G+ AL+LFEEM
Sbjct: 471 KNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEM 530

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            K  IKP+ VT ++V+SACSHSGLV  G K F  M   Y I   ++H+  MVDL GRAG 
Sbjct: 531 QKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGR 590

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           LN+A + I +MP  P   ++  +LGACQIH+N    E AAE+L E  P++ GY+VL+AN+
Sbjct: 591 LNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANI 650

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           Y A   W+K+ +VR  M   G+RK PGC+ V+  N    F    T++  +++IY  L  L
Sbjct: 651 YRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKL 710

Query: 685 TELMKDAGYV 694
              +K+AGYV
Sbjct: 711 ICHIKEAGYV 720



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/527 (24%), Positives = 244/527 (46%), Gaps = 42/527 (7%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           +  +L + +Q+       GL +      KLV+ +  +   + A  + E  + +  + ++ 
Sbjct: 46  RCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHT 105

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           ++  + +     +AL  + +M+   +    + +  +LK CG+  ++  G+ +H   + + 
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
               LF    L +MY K  QV+ AR++FD+M ERD VSWNT+++ Y+  G+ + A ++  
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVK 225

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
            M EE ++ + IT  ++                                   L A S + 
Sbjct: 226 SMCEENLKPSFITIVSV-----------------------------------LPAVSALR 250

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            + +GKEIHG A+R  +    N+  AL+ MY++C  L  A  LF    E+++++WNSM+ 
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMID 310

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
            Y   +  +E+  +F++M   GV+P  V++   L  CA + +L+ G+  H   +   + +
Sbjct: 311 AYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGL-D 369

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            ++ + NSL+ MY +  +V  A S+F  +  R  V++ ++I G+   G    AL  F +M
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
               +KPD  T V+V++A +    +    K    +     +   +     +VD+Y + G 
Sbjct: 430 RSRTVKPDTFTYVSVITAIAELS-ITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGA 488

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +  A+ I   M     +  W  ++     H   G G+ A E   E +
Sbjct: 489 IMIARLIFDMMSERHVTT-WNAMIDGYGTH---GFGKAALELFEEMQ 531


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/655 (32%), Positives = 352/655 (53%), Gaps = 41/655 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  F   G  + A + F  +R      + +  +FA ++  C        G QLH   I+ 
Sbjct: 45  LNGFVKCGEPNSAVKVFEDMRNCQTKPNSI--TFASVLSICASEALSEFGNQLHGLVISC 102

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   +P++   LV  Y+ F   ++A  L         + WN +I+ +V++GF  EA  ++
Sbjct: 103 GFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLF 162

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL--FVHNALVSMYGK 221
            +M S  +  D+ T+ S L +  E   +  G+ +H  I   H  +L  F+ +AL+ +Y K
Sbjct: 163 SEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILR-HGIALDVFLKSALIDIYFK 221

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
              V +A ++F +    D V    +IS Y   GL  +A ++F  + EE +  N +T  ++
Sbjct: 222 CRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASV 281

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L AC+ +  L LGKE+H + ++   
Sbjct: 282 -----------------------------------LPACAGLATLNLGKELHANILKHGL 306

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
            E  +V +A++ MY++C  L  AY +F+   EK  + WN++++  +     +E+  LFR+
Sbjct: 307 DERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQ 366

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M R G+  + V+I++ L  CA +  L HGK  H ++++ A F+  +   ++L++MY + G
Sbjct: 367 MGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGA-FDSEVFAESALIDMYGKCG 425

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            +  A+ VFD+M  ++EV++ S+IA YG  G   V+L LF +M ++ I+PDHVT + +LS
Sbjct: 426 NLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILS 485

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           AC H+G V +G + F  MT  YGI  ++EH+AC+VDL+GRAG LN+A E I  MP++P  
Sbjct: 486 ACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDD 545

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
            +W TLLGAC++H N  + E A+  LL+  PENSG YVL++N++A  G W  + K+R+ M
Sbjct: 546 GVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLM 605

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVK 696
           +  GV+K+PG +W++       F+  D S+ ++ +IY +L  L   ++  GY  K
Sbjct: 606 KKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNNLLLELRKEGYCPK 660



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/546 (27%), Positives = 266/546 (48%), Gaps = 46/546 (8%)

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           +G   +  +   L+  YA      +A  L +    +  + WN++++ +V+ G    A+ V
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGK 221
           ++ M++ + + ++ T+ SVL  C      +FG  +H  + +C   +   V NALV+MY K
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
           FGQ+  A +LF+ M + + V+WN MI+ +   G   EA  LF EM   GV  + IT+   
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITF--- 177

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                   ++L SV         +   +LK GKEIHG  +R   
Sbjct: 178 -----------------------ASFLPSV---------TESASLKQGKEIHGYILRHGI 205

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                +++ALI +Y +C+D+  A  +FK +    I+   +++SGY       ++  +FR 
Sbjct: 206 ALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRW 265

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           +    + PN VT+AS+LP CA +A L  GKE H  IL+  + +E   + +++++MYA+ G
Sbjct: 266 LLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGL-DERRHVGSAIMDMYAKCG 324

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           ++  A  +F  M  +D V + ++I      G+ + A+ LF +M +  +  D V++ A LS
Sbjct: 325 RLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALS 384

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTP 579
           AC++   +  G+     M  I G F   E FA   ++D+YG+ G L+ A+ +   M    
Sbjct: 385 ACANLPALHHGKAIHSFM--IKGAFDS-EVFAESALIDMYGKCGNLSVARCVFDMM-REK 440

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLET--RPENSGYYVLIANMYAATGCWDKLAKV 637
               W +++ A   H +  +      K+LE   +P++  +  +++    A G  DK  + 
Sbjct: 441 NEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHA-GQVDKGIQY 499

Query: 638 RTCMRD 643
             CM +
Sbjct: 500 FRCMTE 505


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/728 (30%), Positives = 374/728 (51%), Gaps = 77/728 (10%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   +A E +  +R+   S D    +F  ++  CG  K    G ++H  A+  G      
Sbjct: 127 GRYVEAIELYKEMRVLGVSLDAF--TFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVF 184

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRY--PLPWNLLISLYVRDGFYAEALCVYKQMQS 168
           +   L+  YA       A  L ++  +    P+ WN +IS +V +G   EAL ++++MQ 
Sbjct: 185 VCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQE 244

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDV 227
             +  + +T+ S L+AC     +  GR +H+ I  + H   ++V NAL++MY   GQ++ 
Sbjct: 245 VGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMED 304

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A R+F  ML +D VSWNT++S      ++ +A   F +MQ+ G + + ++   +     R
Sbjct: 305 AERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGR 364

Query: 288 TGNFKGVLE---------LLSRMRTQETYLD------------------------SVATV 314
           + N    +E         + S M    + +D                        S  T+
Sbjct: 365 SANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTI 424

Query: 315 IGLGACS--HVGALKLGKEIH-----------GSAVRGCYGEYEN--------------- 346
           I   A +  H+ AL L +++            GS +  C G                   
Sbjct: 425 IAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL 484

Query: 347 ----VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               ++NA++ +Y     + +A  +F+    K I++W SM++   H   A E+  LF  +
Sbjct: 485 ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSL 544

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             + +EP+ +T+ S+L   A +++L+ GKE H +++R+  F E L+  NSLV+MYAR G 
Sbjct: 545 IETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIA-NSLVDMYARCGT 603

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A+++F+ + +RD + +TS+I   G+ G G+ A+ LF +M    + PDH+T +A+L A
Sbjct: 604 MENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYA 663

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSHSGLVVEG++ FE M + Y + P  EH+AC+VDL  R+  L +A   +  MP  P++ 
Sbjct: 664 CSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAE 723

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W  LLGAC+IH N  +GE AA+KLL+   ENSG YVL++N +AA G W+ + +VR+ M+
Sbjct: 724 VWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMK 783

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAG------YVVK 696
              ++K PGC+W++  N    F+  D S+ Q   IY  L   T+L+K+ G       +V 
Sbjct: 784 GNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVF 843

Query: 697 EEFCSEEE 704
            + C EE+
Sbjct: 844 HDVCEEEK 851



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 170/597 (28%), Positives = 281/597 (47%), Gaps = 52/597 (8%)

Query: 43  TLKDFAGRG-NLSKAFEAFTRI---RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHA 98
           TL  F+ R  +L +AF++ T      +   +   +  +++  +  C   KAL QG+QLHA
Sbjct: 11  TLPTFSHRPISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHA 70

Query: 99  CAIALGLEKNPVLV-PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
             +      + V +  K V  Y     + +A  + +  + R    WN +I   V  G Y 
Sbjct: 71  HFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYV 130

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALV 216
           EA+ +YK+M+   +  D FT+P VLKACG   +   G  +H     C +   +FV NAL+
Sbjct: 131 EAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALI 190

Query: 217 SMYGKFGQVDVARRLFDK--MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           +MY K G +  AR LFD   M + D VSWN++ISA+  +G   EA  LF  MQE GVE N
Sbjct: 191 AMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESN 250

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
             T+                                   V  L AC     +K+G+ IH 
Sbjct: 251 TYTF-----------------------------------VSALQACEGPTFIKIGRGIHA 275

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             ++  +     V NALI MY+ C  +  A  +FK    K  ++WN++LSG    D   +
Sbjct: 276 VILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSD 335

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +   F++M  SG +P+ V++ +++    R ANL  G E H Y ++  + + ++ + NSL+
Sbjct: 336 AINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGI-DSNMHIGNSLI 394

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV-ALKLFEEMNKNQIKPDH 513
           +MY +   V    S F+ M  +D +++T++IAGY  Q E  + AL L  ++   ++  D 
Sbjct: 395 DMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYA-QNECHLDALNLLRKVQLEKMDVDP 453

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           + + ++L AC  SGL  E   +      + G    +     +V++YG   L++ A+ +  
Sbjct: 454 MMIGSILLAC--SGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFE 511

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAA-EKLLETRPENSGYYVLIANMYAATG 629
            +  +     W +++  C +H    I        L+ET  E      L++ +YAA  
Sbjct: 512 SIN-SKDIVSWTSMITCC-VHNGLAIEALELFNSLIETNIE-PDLITLVSVLYAAAA 565


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/736 (31%), Positives = 377/736 (51%), Gaps = 85/736 (11%)

Query: 31   NNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKAL 90
            N  H +  N    +  F   G+L  A E  T+    + S+++ L+S+  ++  C + K+L
Sbjct: 330  NTTHSVTQNQNAKINKFCEMGDLRNAIELLTK----SKSYELGLNSYCSVLQLCAEKKSL 385

Query: 91   AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WN 144
              GK++H+  I+ G+  +  L  KLV  Y       N   LV+   I   +       WN
Sbjct: 386  EDGKRVHSVIISNGISIDEALGAKLVFMYV------NCGDLVQGRKIFDKIMNDKVFLWN 439

Query: 145  LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
            LL+S Y + G + E++ ++K+MQ   + G+ +T+  VLK    +  V   + VH   +  
Sbjct: 440  LLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKL 499

Query: 204  CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
                +  V N+L++ Y KFG V+ A  LFD++ E D VSWN+MI+     G      ++F
Sbjct: 500  GFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIF 559

Query: 264  VEMQEEGVEVNVIT-------WNTIAGGCL----------------------------RT 288
            ++M   GVEV++ T       W  I    L                            + 
Sbjct: 560  IQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKC 619

Query: 289  GNFKGVLELLSRM--RTQETYLDSVATVIGLG---------------------------- 318
            GN  G  E+  +M   T  ++  ++A  +  G                            
Sbjct: 620  GNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIV 679

Query: 319  -ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
             AC+   +L  G+++H   ++   G    V NALI MY++C  +  A ++F     K I+
Sbjct: 680  HACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIV 739

Query: 378  TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            +WN+M+ GY+      E+  LF +M +   +P+ +T+A +LP CA +A L  G+E H +I
Sbjct: 740  SWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHI 798

Query: 438  LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
            LRR  F++ L +  +LV+MYA+ G +  A+ +FD++ ++D +++T +IAGYG+ G G  A
Sbjct: 799  LRRGYFSD-LHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEA 857

Query: 498  LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
            +  F EM    I+PD  +   +L+ACSHSGL+ EG K F  M +  G+ P+LEH+AC+VD
Sbjct: 858  ISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVD 917

Query: 558  LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
            L  R G L+KA + I  MP  P + +W  LL  C+IH +  + E  AE + E  P+N+ Y
Sbjct: 918  LLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRY 977

Query: 618  YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
            YV++AN+YA    W+++ K+R  M+  G ++ PGC+W++ G  F+ F+  ++ + QA+ I
Sbjct: 978  YVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRI 1037

Query: 678  YPLLGGLTELMKDAGY 693
              LL  LT  M++  Y
Sbjct: 1038 DVLLRKLTMQMQNEDY 1053


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/649 (32%), Positives = 338/649 (52%), Gaps = 39/649 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G++ +AF  F ++   A    ++  +F  ++  C     L  GK+ HA  I +G  
Sbjct: 137 YAQLGHVKEAFALFRQMVDEAMEPSII--TFLIVLDACSSPAGLKLGKEFHAQVIKVGFV 194

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LV+ Y      + A  + +    R    +N++I  Y + G   +A  ++ +M
Sbjct: 195 SDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRM 254

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q    + +  ++ S+L  C     + +G+ VH+ C++      + V  AL+ MY   G +
Sbjct: 255 QQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSI 314

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + ARR+FDKM  RD VSW  MI  YA     ++AF LF  MQEEG++ + IT+  I    
Sbjct: 315 EGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHI---- 370

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          + AC+    L L +EIH   VR  +G   
Sbjct: 371 -------------------------------INACASSADLSLAREIHSQVVRAGFGTDL 399

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V  AL+ MY++C  ++ A  +F   + + +++W++M+  Y    C EE+   F  M R+
Sbjct: 400 LVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRN 459

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            VEP+ VT  ++L  C  +  L  G E +   ++  + + H+ + N+L+ M  + G +  
Sbjct: 460 NVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVS-HIPVGNALINMNVKHGSIER 518

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ +F+ M +RD VT+  +I GY + G  R AL LF+ M K + +P+ VT V VLSACS 
Sbjct: 519 ARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSR 578

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           +G V EG++ F  +    GI P +E + CMVDL GRAG L++A+ +I +MP  P S++W+
Sbjct: 579 AGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWS 638

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
           TLL AC+I+ N  + E AAE+ L + P +   YV +++MYAA G W+ +AKVR  M   G
Sbjct: 639 TLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRG 698

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           VRK  GC W++       F+V+D S+ QA EIY  L  L   +K  GY+
Sbjct: 699 VRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYI 747



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 169/365 (46%), Gaps = 16/365 (4%)

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           NT+I  ++  G   EA Q F  ++ +     V+TWN I  G  + G+ K    L  +M  
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENK----TVVTWNAIIAGYAQLGHVKEAFALFRQMVD 155

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
           +      +  +I L ACS    LKLGKE H   ++  +     +  AL++MY +   +  
Sbjct: 156 EAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDG 215

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           A  +F    ++ + T+N M+ GY      E++  LF  M + G +PN ++  SIL  C+ 
Sbjct: 216 ARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCST 275

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
              L  GK  H   +   + ++ + +  +L+ MY   G +  A+ VFD M  RD V++T 
Sbjct: 276 PEALAWGKAVHAQCMNTGLVDD-VRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTV 334

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG---LVVEGQKQFERMT 540
           +I GY        A  LF  M +  I+PD +T + +++AC+ S    L  E   Q  R  
Sbjct: 335 MIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRA- 393

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
              G    L     +V +Y + G +  A+++   M      + W+ ++GA   +   G G
Sbjct: 394 ---GFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVS-WSAMIGA---YVENGCG 446

Query: 601 EWAAE 605
           E A E
Sbjct: 447 EEAFE 451


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/651 (30%), Positives = 345/651 (52%), Gaps = 39/651 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +   A +G    A E FT+++      D V  + A ++  C    AL +G+QLH+  I  
Sbjct: 286 ISGLAQQGFSDGALELFTKMKRDYLKPDCV--TVASLLSACASNGALCKGEQLHSYVIKA 343

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G+  + ++   L+  Y + S    A  +   +     + WN+++  + +    +E+  ++
Sbjct: 344 GISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIF 403

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           +QMQ + +  + FTYPS+L+ C  +  +D G  +H+  I    +++++V + L+ MY K 
Sbjct: 404 RQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKH 463

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G++D A  +   + E D                                   V++W  + 
Sbjct: 464 GKLDTAHVILRTLTEDD-----------------------------------VVSWTALI 488

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G  +   F   L+    M  +    D++     + AC+ + AL  G++IH  +    Y 
Sbjct: 489 SGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYS 548

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
           E  ++ NAL+++Y+RC  ++ AY+ F+    K  I+WN ++SG+      E++  +F +M
Sbjct: 549 EDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQM 608

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            R+ +E ++ T  S +   A +AN++ GK+ H  I++R  F+  + + N+L+  YA+ G 
Sbjct: 609 NRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRG-FDSDIEVSNALITFYAKCGS 667

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + +A+  F  M  +++V++ ++I GY   G G  A+ LFE+M +    P+HVT V VLSA
Sbjct: 668 IEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSA 727

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSH GLV +G   FE M+  +G+ P+  H+AC+VDL  RAG L++A++ I +MP  P + 
Sbjct: 728 CSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDAT 787

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W TLL AC +H+N  +GE+AA+ LLE  PE+S  YVL++NMYA +G WD   + R  MR
Sbjct: 788 IWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMR 847

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           + GV+K PG +W++  N    F V D  +  A +IY  L  L +   + GY
Sbjct: 848 NRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGY 898



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/554 (25%), Positives = 243/554 (43%), Gaps = 72/554 (12%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C    +L + K+LH   + LG     VL  KLV  Y +    +    + E+   R    W
Sbjct: 20  CLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSW 79

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC-GEMMDVDFGRVVHSCID 202
           + +IS ++        L ++  M    +     ++ SVL+AC G  + + +   +H+ I 
Sbjct: 80  DKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARI- 138

Query: 203 ACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
            CH    S  + N L+ +Y K G +  AR++FD +  +D+VSW  MIS ++  G  +EA 
Sbjct: 139 ICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAI 198

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCL---------------------------------- 286
            LF EM   G+      ++++  GC                                   
Sbjct: 199 HLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLY 258

Query: 287 -RTGNFKGVLELLSRMRTQE-----------------------------TYL--DSVATV 314
            R  NF    ++ S+M++++                              YL  D V   
Sbjct: 259 SRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVA 318

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+  GAL  G+++H   ++        V  AL+ +Y  C D++ A+ +F     +
Sbjct: 319 SLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTE 378

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           +++ WN ML  +  LD   ES  +FR+M   G+ PN  T  SIL  C  V  L  G++ H
Sbjct: 379 NVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIH 438

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             +++   F  ++ + + L++MYA+ GK+  A  +   ++  D V++T+LI+GY      
Sbjct: 439 TQVIKTG-FQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLF 497

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             ALK F+EM    I+ D++   + +SAC+    + +G +Q    + + G    L     
Sbjct: 498 AEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQG-RQIHAQSYVSGYSEDLSIGNA 556

Query: 555 MVDLYGRAGLLNKA 568
           +V LY R G + +A
Sbjct: 557 LVSLYARCGRIKEA 570



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 130/263 (49%), Gaps = 9/263 (3%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  C + G+L   K++HG  ++  +G    + N L+ +Y    DL     +F+    +S+
Sbjct: 17  LDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSV 76

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA--RVANLQHGKEFH 434
            +W+ ++SG+     +     LF  M    V P  ++ AS+L  C+  R+  +++ ++ H
Sbjct: 77  RSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG-IRYAEQIH 135

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             I+   +     ++ N L+ +YA++G +  A+ VFD +  +D V++ ++I+G+   G  
Sbjct: 136 ARIICHGLLCSP-IISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYE 194

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             A+ LF EM+   I P      +VLS C+   L   G+ Q   +   YG    LE + C
Sbjct: 195 EEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGE-QLHALVFKYG--SSLETYVC 251

Query: 555 --MVDLYGRAGLLNKAKEIITKM 575
             +V LY R      A+++ +KM
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKM 274


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/638 (34%), Positives = 342/638 (53%), Gaps = 43/638 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C     + QG  +HA  +      N  +   L+  YA F     A  +  N 
Sbjct: 284 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM 343

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           +    + WN ++S +V++G Y EAL  Y +M+    + D     S++ A     +   G 
Sbjct: 344 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGM 403

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+  +    +  L V N+LV MY KF  +     +FDKM ++D VSW T+I+ +A  G
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 463

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A +LF E+Q EG++++V+  ++I                                 
Sbjct: 464 SHSRALELFREVQLEGIDLDVMMISSI--------------------------------- 490

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L ACS +  +   KEIH   +R    +   ++N ++ +Y  C ++ +A  +F++   K
Sbjct: 491 --LLACSGLKLISSVKEIHSYIIRKGLSDLV-LQNGIVDVYGECGNVDYAARMFELIEFK 547

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +++W SM+S Y H   A E+  LF  M  +GVEP+ +++ SIL   A ++ L+ GKE H
Sbjct: 548 DVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIH 607

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            +++R+    E  L  ++LV+MYAR G + ++++VF+ +  +D V +TS+I  YG+ G G
Sbjct: 608 GFLIRKGFVLEGSLA-STLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCG 666

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           R A+ LF  M    I PDH+  VAVL ACSHSGL+ EG++  E M   Y + P  EH+AC
Sbjct: 667 RAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYAC 726

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           +VDL GRA  L +A + +  M   PT+ +W  LLGACQIH N  +GE AA+KLLE  PEN
Sbjct: 727 LVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPEN 786

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
            G YVL++N+Y+A   W  +  VR  M+  G++K PGC+W++ GN    F+  D S+ Q+
Sbjct: 787 PGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQS 846

Query: 675 QEIYPLLGGLTE-LMKDAGYVVKEEF----CSEEEIVE 707
            EIY  L  +TE L K+ GYV + +F      EEE V+
Sbjct: 847 YEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQ 884



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 155/556 (27%), Positives = 264/556 (47%), Gaps = 44/556 (7%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLD-SFAHIIFCCGKVKALAQGKQLHACAI 101
           +L++   RG++++AF++ T +    +     LD +++ ++  CG  KAL++G+Q+HA  I
Sbjct: 46  SLREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMI 105

Query: 102 ALGLEKNPV-LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
                 N V L  +LV  Y       +A  L +    +    WN +I  YV +G    +L
Sbjct: 106 TSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSL 165

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMY 219
            +Y++M+   I  D  T+P +LKACG + D  +G  VH   I   +   +FV N++V MY
Sbjct: 166 ELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMY 225

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K   ++ AR+LFD+M E++                                  +V++WN
Sbjct: 226 TKCNDLNGARQLFDRMPEKE----------------------------------DVVSWN 251

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           ++       G     L L   M+      ++   V  L AC     +K G  IH + ++ 
Sbjct: 252 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 311

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            Y     V NALI MY+R   +  A  +F    +   I+WNSMLSG+       E+   +
Sbjct: 312 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 371

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            EM  +G +P+ V + SI+   AR  N  HG + H Y ++  + +  L + NSLV+MYA+
Sbjct: 372 HEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGL-DSDLQVGNSLVDMYAK 430

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
              +     +FD M  +D V++T++IAG+   G    AL+LF E+    I  D + + ++
Sbjct: 431 FCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSI 490

Query: 520 LSACSHSGL-VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           L AC  SGL ++   K+        G+   L     +VD+YG  G ++ A  +   + + 
Sbjct: 491 LLAC--SGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFK 547

Query: 579 PTSAMWATLLGACQIH 594
              + W +++ +C +H
Sbjct: 548 DVVS-WTSMI-SCYVH 561



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 202/440 (45%), Gaps = 44/440 (10%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDK 234
            Y SVL+ CG    +  G+ VH+ +   +    S+F+   LV MYGK G +  A +LFD 
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M  +                                    + TWN + G  +  G   G 
Sbjct: 140 MPHK-----------------------------------TIFTWNAMIGAYVTNGEPLGS 164

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           LEL   MR     LD+      L AC  +   + G E+HG A++  Y     V N+++ M
Sbjct: 165 LELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGM 224

Query: 355 YSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           Y++C DL  A  LF +M  ++ +++WNSM+S Y+    + E+  LF EM ++ + PN  T
Sbjct: 225 YTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYT 284

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             + L  C   + ++ G   H  +L+ + +  ++ + N+L+ MYAR GK+ EA ++F  M
Sbjct: 285 FVAALQACEDSSFIKQGMFIHATVLKSSYYI-NVFVANALIAMYARFGKMGEAANIFYNM 343

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
              D +++ S+++G+   G    AL+ + EM     KPD V ++++++A + SG  + G 
Sbjct: 344 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGM 403

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
            Q        G+   L+    +VD+Y +   +     I  KMP     + W T++     
Sbjct: 404 -QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS-WTTIIAG--- 458

Query: 594 HRNTGIGEWAAEKLLETRPE 613
           H   G    A E   E + E
Sbjct: 459 HAQNGSHSRALELFREVQLE 478


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/572 (36%), Positives = 317/572 (55%), Gaps = 47/572 (8%)

Query: 169 RRIR-----GDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           RR+R     GD FT+P V++AC  M     G+ +H   ++   +  L V N L+ MY K 
Sbjct: 31  RRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKL 90

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G++  AR LFD+M  R  +SWNTM+SAYA       A ++F  M+ EG+E N++TW ++ 
Sbjct: 91  GRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLI 150

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
               R+G  +  +EL   MR +   +   A  + +  C+ +GA    K IH  AV+G + 
Sbjct: 151 SSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFE 210

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
           EY  V++ALI +Y +  D+  A+ LF     KS+ +WN++++ +      +E+  +F ++
Sbjct: 211 EYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQL 270

Query: 403 FRSGVEP---------------------------------------NYVTIASILPLCAR 423
            RSG  P                                       N VTI+++L LCA 
Sbjct: 271 ERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAE 330

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           +A L  G+E H +++R  M N ++L+ N LV MYA+ G + E   +F+   R+D +++ S
Sbjct: 331 LAALHLGREIHGHVVRAVMVN-NILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNS 389

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +I GYG+ G G  AL+ F++M K   KPD VT VAVLS+CSHSGLV EG++ F++M   Y
Sbjct: 390 MITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKY 449

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
            I PQ+EH+ACMVDL GRAGLL +A EI+  MP  P + +W  LL +C++H NT I E  
Sbjct: 450 RIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEET 509

Query: 604 AEKLLE-TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFS 662
           A  L   +  E +G Y+L++N+YAA+G W+  A+VRT  +  G++K PG +W+       
Sbjct: 510 ASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKNVY 569

Query: 663 PFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            F   +      ++I+ +L  LT  M+  G V
Sbjct: 570 TFSAGNNMQRGFEQIFEILEELTFQMEREGTV 601



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 209/440 (47%), Gaps = 44/440 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I  C  + +   GK +H   + +G + +  +  +L+  YA      +A  L +  
Sbjct: 44  TFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDRM 103

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA----------- 184
           ++R  + WN ++S Y  +     AL ++++M+S  +  +  T+ S++ +           
Sbjct: 104 SVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAM 163

Query: 185 -------------CGEMMDV------DFGRVVHSCIDACHEWSL--------FVHNALVS 217
                         GE + V      D G  V + I   HE+++        FV +AL+ 
Sbjct: 164 ELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKI--IHEYAVKGGFEEYSFVKSALIC 221

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG----VEV 273
           +YGK G V+ A  LF +M  +   SWN +I+++A  GL  EA ++F +++  G    +  
Sbjct: 222 VYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRP 281

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           NV++W+ I  G    G  K  LEL  RM+  +   ++V     L  C+ + AL LG+EIH
Sbjct: 282 NVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIH 341

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G  VR        V N L+ MY++C  L+  +++F+ T  K +I+WNSM++GY       
Sbjct: 342 GHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGM 401

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
            +   F +M + G +P+ VT  ++L  C+    +  G+     +L++      +  +  +
Sbjct: 402 NALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACM 461

Query: 454 VEMYARSGKVPEAKSVFDLM 473
           V++  R+G + EA  +   M
Sbjct: 462 VDLLGRAGLLREASEIVKNM 481



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 120/286 (41%), Gaps = 42/286 (14%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G   +A E F  +R+     +V  ++ A +I  C  + A  + K +H  A+  
Sbjct: 150 ISSYARSGWHEEAMELFGLMRMKGV--EVSGEALAVVISICADLGAFVRAKIIHEYAVKG 207

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY------------- 150
           G E+   +   L+  Y      N A  L      +    WN LI+ +             
Sbjct: 208 GFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIF 267

Query: 151 ---------------------VRDGFYA-----EALCVYKQMQSRRIRGDNFTYPSVLKA 184
                                + DGF +     EAL ++++MQ  +I  +  T  +VL  
Sbjct: 268 SQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSL 327

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           C E+  +  GR +H   + A    ++ V N LV+MY K G +     +F+K   +D +SW
Sbjct: 328 CAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISW 387

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           N+MI+ Y   GL   A + F +M + G + + +T+  +   C  +G
Sbjct: 388 NSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSG 433



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 103/276 (37%), Gaps = 50/276 (18%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  FA +G   +A E F R++      + V  + + ++  C ++ AL  G+++H   +  
Sbjct: 290 IDGFASKGREKEALELFRRMQHAKILANAV--TISTVLSLCAELAALHLGREIHGHVVRA 347

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            +  N ++   LV  YA          + E +  +  + WN +I+ Y   G    AL  +
Sbjct: 348 VMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETF 407

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFG 223
            QM     + D  T+ +VL +C            HS                       G
Sbjct: 408 DQMIKLGFKPDGVTFVAVLSSCS-----------HS-----------------------G 433

Query: 224 QVDVARRLFDKMLERDAVS-----WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
            V   RRLFD+ML++  +      +  M+      GL +EA ++   M    V  N   W
Sbjct: 434 LVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMP---VAPNACVW 490

Query: 279 NTIAGGCLRTGNFKGVLEL------LSRMRTQETYL 308
             +   C    N +   E       LS   T  TY+
Sbjct: 491 GALLNSCRMHNNTEIAEETASHLFNLSHRETTGTYM 526


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/603 (34%), Positives = 324/603 (53%), Gaps = 39/603 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  +K+L  GKQ+H      G  K+P ++ KL+  YA      +A  L +         W
Sbjct: 5   CSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAW 64

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
             +   Y+R G Y + +  Y  M+   +  DN+ +P VL+AC +++  + G  +H  +  
Sbjct: 65  TAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIV 124

Query: 204 CH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           C  E +L V N+L+ MY K G    AR +F++M ERD  SWN+MIS Y S GL   A +L
Sbjct: 125 CGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVEL 184

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE----TYLDSVATVIG-- 316
              M+ +G E +V+TWNT+     + G F    E+L ++        T L S  + IG  
Sbjct: 185 LNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEH 244

Query: 317 --------------------------LGACSHVGALKLGKEIHGSAVRGCYGE--YENVR 348
                                     L +C H+GAL+ GKEIHG   +       Y +  
Sbjct: 245 DMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAG 304

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
            AL+TMY++C  ++ A  +F++  +  I+TWN+M+ G+  LD  +++   FREM R  ++
Sbjct: 305 AALLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIK 364

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            +  TI++ILP+C    +LQ+G   H Y+ +    +  + +WN+++ MY + G V  A +
Sbjct: 365 NDQTTISTILPVC----DLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYT 420

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           +F  M  +D V++ ++I G+G+ G G+ ALKL +EM  + I P+  T  +VLSACSHSGL
Sbjct: 421 IFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGL 480

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           V EG + F  MT  Y I P++EH++C+VD+  RAG    A   I KMP  P  ++W  LL
Sbjct: 481 VDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALL 540

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
            AC+ ++N   G  AAE+L+   P+ +G+YV ++N+YA  G WD   +VR  +   G+ K
Sbjct: 541 AACRAYQNLDFGRLAAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVK 600

Query: 649 IPG 651
             G
Sbjct: 601 PSG 603



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 12/222 (5%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK----LVTFYASFSLYNNAC 129
           LD    ++  C  + AL  GK++H       +E N V        L+T YA      +A 
Sbjct: 264 LDCLCSVLVSCRHIGALRSGKEIH--GYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAI 321

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            + E  +    + WN +I  +V      +A+  +++MQ   I+ D  T  ++L  C    
Sbjct: 322 NVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPVC---- 377

Query: 190 DVDFGRVVHSCIDACHEWS--LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
           D+ +G  +H+ +      S  + V NA++ MY K G V  A  +F  M  +D VSWNTMI
Sbjct: 378 DLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMI 437

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
             +   G  + A +L  EM   G+  N  T+ ++   C  +G
Sbjct: 438 GGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSG 479



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 123/280 (43%), Gaps = 10/280 (3%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  CS++ +L  GK+IH       +G+   +   LI MY+ C  L  A  LF    + ++
Sbjct: 2   LQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNV 61

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
             W ++   Y      ++    +  M  S V P+      +L  C ++   + G   H  
Sbjct: 62  YAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKD 121

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           ++       +L + NSL++MY + G    A+ VF+ M  RD  ++ S+I+GY   G   +
Sbjct: 122 VIVCGC-ESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADL 180

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A++L   M  +  +PD VT   ++ A    G   E  +  +++       P +  +  ++
Sbjct: 181 AVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQ-----PNIISWTTLI 235

Query: 557 DLYGRAG----LLNKAKEIITKMPYTPTSAMWATLLGACQ 592
             Y + G     L   +++I +   +P      ++L +C+
Sbjct: 236 SSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCR 275



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L LC+ + +L  GK+ H  I       +  +L   L++MYA    +  A+ +FD M + 
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSGWGKDPFML-TKLIQMYADCDHLFSAQRLFDKMPQP 59

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           +   +T++   Y   G     ++ +  M  + + PD+     VL AC+   L  EG    
Sbjct: 60  NVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQL-LWFEGGIWI 118

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            +   + G    L+    ++D+Y + G    A+ +  +M
Sbjct: 119 HKDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEM 157


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/659 (31%), Positives = 346/659 (52%), Gaps = 41/659 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ ++  C  VK L  GKQ+H   +  G E +  +   LV  YA    + ++  L +  
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN L S YV+  F  EA+ ++ +M    I+ + F+  S++ AC  + D   G+
Sbjct: 219 PERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ++H   I   ++W  F  NALV MY K G +  A  +F+K+ + D VSWN +I+      
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 255 LWKEAFQLFVEMQEE------------------GV---------------------EVNV 275
             ++A +L  +M+ +                  G+                     E ++
Sbjct: 339 HHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 398

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
           I WN I  G  +       L L   M  +    +       L + + +  + + +++HG 
Sbjct: 399 IAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGL 458

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           +V+  +     V N+LI  Y +C  +  A  +F+      ++++ SM++ Y      EE+
Sbjct: 459 SVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEA 518

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             LF EM    ++P+    +S+L  CA ++  + GK+ H +IL+   F   +   NSLV 
Sbjct: 519 LKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYG-FVLDIFAGNSLVN 577

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+ G + +A   F  ++ R  V+++++I G    G GR AL+LF +M K  + P+H+T
Sbjct: 578 MYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHIT 637

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           +V+VL AC+H+GLV E +  FE M  ++G  P  EH+ACM+DL GRAG +N+A E++ KM
Sbjct: 638 LVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKM 697

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P+   +++W  LLGA +IH++  +G  AAE L    PE SG +VL+AN+YA+ G W+ +A
Sbjct: 698 PFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVA 757

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +VR  MRD  V+K PG +W++  +    FLV D S+ ++QEIY  L  L++LM  AGYV
Sbjct: 758 EVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYV 816



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 148/563 (26%), Positives = 262/563 (46%), Gaps = 51/563 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S++ ++  C   K+L  G Q+HA     GL  +P +   L+  Y+    +  A  LV+ S
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDES 117

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           +    + W+ LIS Y ++G    AL  + +M    ++ + FT+ SVLKAC  + D+  G+
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGK 177

Query: 196 VVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH  +     E  +FV N LV MY K  +   ++RLFD++ ER+ VSWN + S Y    
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXD 237

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL---------------------------- 286
              EA  LF EM   G++ N  + +++   C                             
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSAN 297

Query: 287 -------RTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC----SHVGALKL----GKE 331
                  + G+    + +  +++      D V+    +  C     H  AL+L     ++
Sbjct: 298 ALVDMYAKVGDLADAISVFEKIKQP----DIVSWNAVIAGCVLHEHHEQALELLGQMKRQ 353

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H S ++        V   L+ MYS+C  L  A + F +  EK +I WN+++SGY+    
Sbjct: 354 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 413

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             E+  LF EM + G+  N  T+++IL   A +  +   ++ H   ++   F+  + + N
Sbjct: 414 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSG-FHSDIYVVN 472

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL++ Y +   V +A+ +F+  +  D V++TS+I  Y   G+G  ALKLF EM   ++KP
Sbjct: 473 SLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKP 532

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D     ++L+AC++     +G KQ       YG    +     +V++Y + G ++ A   
Sbjct: 533 DRFVCSSLLNACANLSAFEQG-KQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 591

Query: 572 ITKMPYTPTSAMWATLLGACQIH 594
            +++      + W+ ++G    H
Sbjct: 592 FSELTERGIVS-WSAMIGGLAQH 613



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 144/286 (50%), Gaps = 15/286 (5%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  C    +L+ G +IH    +    +  ++RN LI +YS+C+   +A  L   ++E  +
Sbjct: 63  LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDL 122

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W++++SGY        +   F EM   GV+ N  T +S+L  C+ V +L+ GK+ H  
Sbjct: 123 VSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGV 182

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           ++    F   + + N+LV MYA+  +  ++K +FD +  R+ V++ +L + Y        
Sbjct: 183 VVVSG-FEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGE 241

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL----EHF 552
           A+ LF EM  + IKP+  ++ ++++AC+       G +   R   I+G   +L    + F
Sbjct: 242 AVGLFYEMVLSGIKPNEFSLSSMVNACT-------GLRDSSRGKIIHGYLIKLGYDWDPF 294

Query: 553 A--CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           +   +VD+Y + G L  A  +  K+   P    W  ++  C +H +
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEH 339


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/638 (34%), Positives = 342/638 (53%), Gaps = 43/638 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C     + QG  +HA  +      N  +   L+  YA F     A  +  N 
Sbjct: 320 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM 379

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           +    + WN ++S +V++G Y EAL  Y +M+    + D     S++ A     +   G 
Sbjct: 380 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGM 439

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+  +    +  L V N+LV MY KF  +     +FDKM ++D VSW T+I+ +A  G
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 499

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A +LF E+Q EG++++V+  ++I                                 
Sbjct: 500 SHSRALELFREVQLEGIDLDVMMISSI--------------------------------- 526

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L ACS +  +   KEIH   +R    +   ++N ++ +Y  C ++ +A  +F++   K
Sbjct: 527 --LLACSGLKLISSVKEIHSYIIRKGLSDLV-LQNGIVDVYGECGNVDYAARMFELIEFK 583

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +++W SM+S Y H   A E+  LF  M  +GVEP+ +++ SIL   A ++ L+ GKE H
Sbjct: 584 DVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIH 643

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            +++R+    E  L  ++LV+MYAR G + ++++VF+ +  +D V +TS+I  YG+ G G
Sbjct: 644 GFLIRKGFVLEGSLA-STLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCG 702

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           R A+ LF  M    I PDH+  VAVL ACSHSGL+ EG++  E M   Y + P  EH+ C
Sbjct: 703 RAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVC 762

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           +VDL GRA  L +A + +  M   PT+ +W  LLGACQIH N  +GE AA+KLLE  PEN
Sbjct: 763 LVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPEN 822

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
            G YVL++N+YAA   W  + +VR  M+  G++K PGC+W++ GN    F+  D S+ Q+
Sbjct: 823 PGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQS 882

Query: 675 QEIYPLLGGLTE-LMKDAGYVVKEEF----CSEEEIVE 707
            EIY  L  +TE L K+ GYV + +F      EEE V+
Sbjct: 883 YEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQ 920



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 154/556 (27%), Positives = 263/556 (47%), Gaps = 44/556 (7%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLD-SFAHIIFCCGKVKALAQGKQLHACAI 101
           +L++   RG++++AF++ T +    +     LD +++ ++  CG  KAL++G+Q+HA  I
Sbjct: 82  SLREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMI 141

Query: 102 ALGLEKNPV-LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
                 N V L  +LV  Y       +A  L +    +    WN +I  YV +G    +L
Sbjct: 142 TSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSL 201

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMY 219
            +Y++M+   I  D  T+P +LKACG + D   G  VH   I   +   +FV N++V MY
Sbjct: 202 ELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMY 261

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K   ++ AR+LFD+M E++                                  +V++WN
Sbjct: 262 TKCNDLNGARQLFDRMPEKE----------------------------------DVVSWN 287

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           ++       G     L L   M+      ++   V  L AC     +K G  IH + ++ 
Sbjct: 288 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 347

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            Y     V NALI MY+R   +  A  +F    +   I+WNSMLSG+       E+   +
Sbjct: 348 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 407

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            EM  +G +P+ V + SI+   AR  N  +G + H Y ++  + +  L + NSLV+MYA+
Sbjct: 408 HEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGL-DSDLQVGNSLVDMYAK 466

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
              +     +FD M  +D V++T++IAG+   G    AL+LF E+    I  D + + ++
Sbjct: 467 FCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSI 526

Query: 520 LSACSHSGL-VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           L AC  SGL ++   K+        G+   L     +VD+YG  G ++ A  +   + + 
Sbjct: 527 LLAC--SGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFK 583

Query: 579 PTSAMWATLLGACQIH 594
              + W +++ +C +H
Sbjct: 584 DVVS-WTSMI-SCYVH 597



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 202/440 (45%), Gaps = 44/440 (10%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDK 234
            Y SVL+ CG    +  G+ VH+ +   +    S+F+   LV MYGK G +  A +LFD 
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M  +                                    + TWN + G  +  G   G 
Sbjct: 176 MPHK-----------------------------------TIFTWNAMIGAYVTNGEPLGS 200

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           LEL   MR     LD+      L AC  +   + G E+HG A++  Y     V N+++ M
Sbjct: 201 LELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGM 260

Query: 355 YSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           Y++C DL  A  LF +M  ++ +++WNSM+S Y+    + E+  LF EM ++ + PN  T
Sbjct: 261 YTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYT 320

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             + L  C   + ++ G   H  +L+ + +  ++ + N+L+ MYAR GK+ EA ++F  M
Sbjct: 321 FVAALQACEDSSFIKQGMFIHATVLKSSYYI-NVFVANALIAMYARFGKMGEAANIFYNM 379

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
              D +++ S+++G+   G    AL+ + EM     KPD V ++++++A + SG  + G 
Sbjct: 380 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGM 439

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
            Q        G+   L+    +VD+Y +   +     I  KMP     + W T++     
Sbjct: 440 -QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS-WTTIIAG--- 494

Query: 594 HRNTGIGEWAAEKLLETRPE 613
           H   G    A E   E + E
Sbjct: 495 HAQNGSHSRALELFREVQLE 514


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/675 (31%), Positives = 348/675 (51%), Gaps = 56/675 (8%)

Query: 68  ASHDVVLD-------SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA 120
           A H +V D        FA ++  C + ++    + +HA  +         +  +L+  Y 
Sbjct: 2   AKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYG 61

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL-----------CVYKQMQSR 169
                ++A  L +    R    WN LIS+  + GF  EA            C +  M S 
Sbjct: 62  KCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSG 121

Query: 170 RIRGDNF--------------------TYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWS 208
             + D F                    ++ S L AC  +MD++ G  VH+ +    +   
Sbjct: 122 FAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTD 181

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +++ +AL+ MY K G V  A  +F  M+ER+ V+WN++I+ Y   G   EA ++FV M +
Sbjct: 182 VYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD 241

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV----ATVIGLGACSHVG 324
            G+E + +T  ++   C      K  L++ +R+     + D +    A V     CS V 
Sbjct: 242 SGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVN 301

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
             +  +     ++R    E      ++++ Y+R   ++ A  +F    ++++++WN++++
Sbjct: 302 EAR--RVFDRMSIRNVVSE-----TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIA 354

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-- 442
           GYT     EE+  LFR + R  + P + T  ++L  CA +A+L  G++ H ++L++    
Sbjct: 355 GYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEF 414

Query: 443 ---FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
                  + + NSL++MY + G + +   VF+ M  RD V++ ++I GY   G G  AL+
Sbjct: 415 QSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQ 474

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           +F +M     KPDHVTM+ VL ACSH+GLV EG+  F  M   +G+ P  +H+ CMVDL 
Sbjct: 475 IFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLL 533

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
           GRAG LN+AK +I  MP  P + +W +LL AC++H N  +G+ AAEKLLE  P NSG YV
Sbjct: 534 GRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYV 593

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++NMYA  G W  + +VR  MR  GV K PGC+W++  +    FLV D S+   ++IY 
Sbjct: 594 LLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYS 653

Query: 680 LLGGLTELMKDAGYV 694
           +L  LTE MK  GY+
Sbjct: 654 VLKMLTEQMKRVGYI 668



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 218/460 (47%), Gaps = 26/460 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
           FA      ++ E F ++       D +L+  SF   +  C  +  L  G Q+HA      
Sbjct: 122 FAQHDRFEESLEYFVKMH----REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSR 177

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   L+  Y+       A  +      R  + WN LI+ Y ++G  +EAL V+ 
Sbjct: 178 YSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFV 237

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M    +  D  T  SV+ AC  +  +  G  +H+ +   +++   L + NALV MY K 
Sbjct: 238 RMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKC 297

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            +V+ ARR+FD+M  R+ VS  +M+S YA     K A  +F +M +     NV++WN + 
Sbjct: 298 SKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQR----NVVSWNALI 353

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G  + G  +  L L   ++ +  +         L AC+++  L LG++ H   ++  + 
Sbjct: 354 AGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGF- 412

Query: 343 EYEN-------VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           E+++       V N+LI MY +C  +     +F+   E+  ++WN+++ GY       E+
Sbjct: 413 EFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEA 472

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM--FNEHLLLWNSL 453
             +FR+M   G +P++VT+  +L  C+    ++ G+ +   +    +    +H   +  +
Sbjct: 473 LQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDH---YTCM 529

Query: 454 VEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQG 492
           V++  R+G + EAK++ + M    D V + SL+A   + G
Sbjct: 530 VDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 569


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 222/643 (34%), Positives = 337/643 (52%), Gaps = 41/643 (6%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           V  D F  ++  C ++++L QG+++HA  +  G++ N  L   L++ YA      +A  +
Sbjct: 94  VYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRV 153

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +    R  + W  +I  +V      EA   Y+ M+    + D  T+ S+L A      +
Sbjct: 154 FDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELL 213

Query: 192 DFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ VH  I  A  E    V  +LV MY K G +  A+ +FDK+ E+            
Sbjct: 214 QVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEK------------ 261

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                                  NV+TW  +  G  + G     LELL +M+  E   + 
Sbjct: 262 -----------------------NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNK 298

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           +     L  C+   AL+ GK++H   ++  YG    V NALITMY +C  L+ A  LF  
Sbjct: 299 ITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGD 358

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              + ++TW +M++GY  L   +E+  LFR M + G++P+ +T  S L  C+  A LQ G
Sbjct: 359 LPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEG 418

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H  ++  A ++  + L ++LV MYA+ G + +A+ VF+ MS R+ V +T++I G   
Sbjct: 419 KSIHQQLVH-AGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQ 477

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G  R AL+ FE+M K  IKPD VT  +VLSAC+H GLV EG+K F  M   YGI P +E
Sbjct: 478 HGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVE 537

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H++C VDL GRAG L +A+ +I  MP+ P  ++W  LL AC+IH +   GE AAE +L+ 
Sbjct: 538 HYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKL 597

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P++ G YV ++N+YAA G ++   KVR  M    V K PG +W++       F V+D S
Sbjct: 598 DPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKS 657

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEF----CSEEEIVEEI 709
           + +A+EIY  LG LTE +K+ GYV    F      EE+ V+ +
Sbjct: 658 HPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTL 700



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 221/452 (48%), Gaps = 45/452 (9%)

Query: 147 ISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DA 203
           +S+  + G   EAL +   M  Q  R+  D F    +L+ C  +  ++ GR VH+ I  +
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFR--GLLQECARLRSLEQGREVHAAILKS 125

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             + + ++ N L+SMY K G +  ARR+FD + +R+ VSW  MI A+ +     EA++ +
Sbjct: 126 GIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCY 185

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
             M+  G + + +T+ ++                                   L A ++ 
Sbjct: 186 ETMKLAGCKPDKVTFVSL-----------------------------------LNAFTNP 210

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L++G+++H    +        V  +L+ MY++C D+  A ++F    EK+++TW  ++
Sbjct: 211 ELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLI 270

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           +GY      + +  L  +M ++ V PN +T  SIL  C     L+HGK+ H YI++   +
Sbjct: 271 AGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSG-Y 329

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
              + + N+L+ MY + G + EA+ +F  +  RD VT+T+++ GY   G    A+ LF  
Sbjct: 330 GREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRR 389

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI-YGIFPQLEHFACMVDLYGRA 562
           M +  IKPD +T  + L++CS    + EG+   +++    Y +   L+  + +V +Y + 
Sbjct: 390 MQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKC 447

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           G ++ A+ +  +M      A W  ++  C  H
Sbjct: 448 GSMDDARLVFNQMSERNVVA-WTAMITGCAQH 478



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 203/430 (47%), Gaps = 45/430 (10%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           AG  NL +A++ +  +++     D V  +F  ++      + L  G+++H      GLE 
Sbjct: 174 AGNQNL-EAYKCYETMKLAGCKPDKV--TFVSLLNAFTNPELLQVGQKVHMEIAKAGLEL 230

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
            P +   LV  YA     + A  + +    +  + W LLI+ Y + G    AL + ++MQ
Sbjct: 231 EPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQ 290

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVD 226
              +  +  TY S+L+ C   + ++ G+ VH   I + +   ++V NAL++MY K G + 
Sbjct: 291 QAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLK 350

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            AR+LF  +  RD V+W  M++ YA  G   EA  LF  MQ++G++ + +T+ +      
Sbjct: 351 EARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTS------ 404

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                         L +CS    L+ GK IH   V   Y     
Sbjct: 405 -----------------------------ALTSCSSPAFLQEGKSIHQQLVHAGYSLDVY 435

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           +++AL++MY++C  +  A ++F   +E++++ W +M++G        E+   F +M + G
Sbjct: 436 LQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQG 495

Query: 407 VEPNYVTIASILPLCARVANLQHG-KEFHCYILRRAM--FNEHLLLWNSLVEMYARSGKV 463
           ++P+ VT  S+L  C  V  ++ G K F    L   +    EH   ++  V++  R+G +
Sbjct: 496 IKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH---YSCFVDLLGRAGHL 552

Query: 464 PEAKSVFDLM 473
            EA++V   M
Sbjct: 553 EEAENVILTM 562



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 3/244 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A +G +  A E   +++    + + +  ++  I+  C    AL  GK++H   I  G  
Sbjct: 273 YAQQGQVDVALELLEKMQQAEVAPNKI--TYTSILQGCTTPLALEHGKKVHRYIIQSGYG 330

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           +   +V  L+T Y        A  L  +   R  + W  +++ Y + GF+ EA+ ++++M
Sbjct: 331 REIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRM 390

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q + I+ D  T+ S L +C     +  G+ +H   + A +   +++ +ALVSMY K G +
Sbjct: 391 QQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSM 450

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D AR +F++M ER+ V+W  MI+  A  G  +EA + F +M+++G++ + +T+ ++   C
Sbjct: 451 DDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSAC 510

Query: 286 LRTG 289
              G
Sbjct: 511 THVG 514



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 21/214 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +A + F R++      D +  +F   +  C     L +GK +H   +  G  
Sbjct: 374 YAQLGFHDEAIDLFRRMQQQGIKPDKM--TFTSALTSCSSPAFLQEGKSIHQQLVHAGYS 431

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  L   LV+ YA     ++A  +    + R  + W  +I+   + G   EAL  ++QM
Sbjct: 432 LDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQM 491

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV----------HNALV 216
           + + I+ D  T+ SVL AC  +  V+ GR         H  S+++          ++  V
Sbjct: 492 KKQGIKPDKVTFTSVLSACTHVGLVEEGRK--------HFRSMYLDYGIKPMVEHYSCFV 543

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVS-WNTMISA 249
            + G+ G ++ A  +   M  +   S W  ++SA
Sbjct: 544 DLLGRAGHLEEAENVILTMPFQPGPSVWGALLSA 577


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 212/626 (33%), Positives = 336/626 (53%), Gaps = 39/626 (6%)

Query: 72  VVLDSFAHI--IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           ++ DSF ++  +  C K K L   KQ+H C I   +E+N  ++  L+  Y        A 
Sbjct: 24  LITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEAR 83

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            + +    +    WN +I+ YV      +A+ ++++M    ++ +  TY  +LKAC  + 
Sbjct: 84  CVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLS 143

Query: 190 DVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
            + +G+ VH+CI     E  + V  AL+ MYGK G ++ ARR+FD ++  D +SW  MI 
Sbjct: 144 ALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIG 203

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
           AYA  G  KEA++L ++M++EG + N IT+ +I                           
Sbjct: 204 AYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSI--------------------------- 236

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   L AC+  GALK  K +H  A+         V  AL+ MY++   +  A ++F
Sbjct: 237 --------LNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVF 288

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                + +++WN M+  +       E+  LF +M   G +P+ +   SIL  CA    L+
Sbjct: 289 DRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE 348

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
             K+ H + L   +  + + +  +LV MY++SG + +A+ VFD M  R+ V++ ++I+G 
Sbjct: 349 WVKKIHRHALDSGLEVD-VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGL 407

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G G+ AL++F  M  + +KPD VT VAVLSACSH+GLV EG+ Q+  MT +YGI P 
Sbjct: 408 AQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPD 467

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           + H  CMVDL GRAG L +AK  I  M   P  A W  LLG+C+ + N  +GE  A++ L
Sbjct: 468 VSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERL 527

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           +  P+N+  YVL++N+YA  G WD ++ VRT MR+ G+RK PG +W++  N    FLV D
Sbjct: 528 KLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVAD 587

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYV 694
           +S+ + +EI      + E +K  GY+
Sbjct: 588 SSHPECKEINESKDKVIEKIKAEGYI 613



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 208/450 (46%), Gaps = 42/450 (9%)

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNAL 215
           +EA+ V      R +  D+F Y  VLK C +  D+   + VH CI  +  E +  V N L
Sbjct: 10  SEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNL 69

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + +Y + G++  AR +FD ++++   SWN MI+ Y      ++A +LF EM  EGV+ N 
Sbjct: 70  LHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNA 129

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            T+  I                                   L AC+ + ALK GKE+H  
Sbjct: 130 GTYMII-----------------------------------LKACASLSALKWGKEVHAC 154

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
              G       V  AL+ MY +C  +  A  +F       II+W  M+  Y      +E+
Sbjct: 155 IRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEA 214

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             L  +M + G +PN +T  SIL  CA    L+  K  H + L  A     + +  +LV+
Sbjct: 215 YRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHAL-DAGLELDVRVGTALVQ 273

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+SG + +A+ VFD M  RD V++  +I  +   G G  A  LF +M     KPD + 
Sbjct: 274 MYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIM 333

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            +++L+AC+ +G  +E  K+  R     G+   +     +V +Y ++G ++ A+ +  +M
Sbjct: 334 FLSILNACASAG-ALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRM 392

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
                 +  A + G  Q     G+G+ A E
Sbjct: 393 KVRNVVSWNAMISGLAQ----HGLGQDALE 418



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 178/359 (49%), Gaps = 11/359 (3%)

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
           + ++ L++R++ +    DS   V  L  C     L   K++H   ++    +  +V N L
Sbjct: 11  EAIVVLMNRLQ-RGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNL 69

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           + +Y  C  L+ A  +F    +KS  +WN+M++GY     AE++  LFREM   GV+PN 
Sbjct: 70  LHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNA 129

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            T   IL  CA ++ L+ GKE H  I R       + +  +L+ MY + G + EA+ +FD
Sbjct: 130 GTYMIILKACASLSALKWGKEVHACI-RHGGLESDVRVGTALLRMYGKCGSINEARRIFD 188

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +   D +++T +I  Y   G G+ A +L  +M +   KP+ +T V++L+AC+  G  ++
Sbjct: 189 NLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEG-ALK 247

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
             K+  R     G+   +     +V +Y ++G ++ A+ +  +M      + W  ++GA 
Sbjct: 248 WVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVS-WNVMIGAF 306

Query: 592 QIHRNTGIGEWAAEKLLETRPE----NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
             H   G G  A +  L+ + E    ++  ++ I N  A+ G  + + K+     D G+
Sbjct: 307 AEH---GRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGL 362



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 3/244 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  GN  +A+    ++       + +  ++  I+  C    AL   K++H  A+  GLE
Sbjct: 205 YAQSGNGKEAYRLMLQMEQEGFKPNAI--TYVSILNACASEGALKWVKRVHRHALDAGLE 262

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LV  YA     ++A  + +   +R  + WN++I  +   G   EA  ++ QM
Sbjct: 263 LDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM 322

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q+   + D   + S+L AC     +++ + +H   +D+  E  + V  ALV MY K G +
Sbjct: 323 QTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSI 382

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D AR +FD+M  R+ VSWN MIS  A  GL ++A ++F  M   GV+ + +T+  +   C
Sbjct: 383 DDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSAC 442

Query: 286 LRTG 289
              G
Sbjct: 443 SHAG 446



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 5/211 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G   +A++ F +++      D ++  F  I+  C    AL   K++H  A+  GLE
Sbjct: 306 FAEHGRGHEAYDLFLQMQTEGCKPDAIM--FLSILNACASAGALEWVKKIHRHALDSGLE 363

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LV  Y+     ++A  + +   +R  + WN +IS   + G   +AL V+++M
Sbjct: 364 VDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRM 423

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQ 224
            +  ++ D  T+ +VL AC     VD GR  +  +   +  E  +   N +V + G+ G+
Sbjct: 424 TAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGR 483

Query: 225 VDVARRLFDKM-LERDAVSWNTMISAYASKG 254
           +  A+   D M ++ D  +W  ++ +  + G
Sbjct: 484 LMEAKLFIDNMAVDPDEATWGALLGSCRTYG 514


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 219/651 (33%), Positives = 351/651 (53%), Gaps = 39/651 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G++S A E F  +R +    +    + A  +        L  G QLH  A+  
Sbjct: 219 MDGYVKAGSVSSAVELFGDMRASGCEPNFA--TLACFLSVSATESDLFFGVQLHTLAVKY 276

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE    +   LV+ YA     ++   L         + WN +IS  V++GF  +AL ++
Sbjct: 277 GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLF 336

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
             MQ   IR D+ T  S+L A  ++   + G+ +H  I   C    +F+ +ALV +Y K 
Sbjct: 337 CDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC 396

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V +A+ ++D     D V  +TMIS Y   G+ +EA ++F  + E+G+  N +      
Sbjct: 397 RAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAV------ 450

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                      ++A+V  L AC+ + A+KLG+E+H  A++  Y 
Sbjct: 451 ---------------------------AIASV--LPACASMAAMKLGQELHSYALKNAYE 481

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V +AL+ MY++C  L  ++ +F   + K  +TWNSM+S +      EE+  LFREM
Sbjct: 482 GRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM 541

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              GV+ + VTI+S+L  CA +  + +GKE H  +++  +    L   ++L++MY + G 
Sbjct: 542 CMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPI-RADLFAESALIDMYGKCGN 600

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  VF+ M  ++EV++ S+IA YG  G  + ++ L   M +   K DHVT +A++SA
Sbjct: 601 LEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSA 660

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C+H+G V EG + F  MT  Y I P++EHFACMVDLY RAG L+KA E+I  MP+ P + 
Sbjct: 661 CAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAG 720

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W  LL AC++HRN  + E A+++L +  P NSGYYVL++N+ A  G WD ++KVR  M+
Sbjct: 721 IWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMK 780

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           D  V+KIPG +WVD  N    F+  D S+  +++IY  L  +   +++ G+
Sbjct: 781 DTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELREEGH 831



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 138/501 (27%), Positives = 244/501 (48%), Gaps = 36/501 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F +++  C  + A+A G+ +H  A  LGL+ +  +   L+  YA+  L  +A  + +  
Sbjct: 148 TFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM 207

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN+++  YV+ G  + A+ ++  M++     +  T    L       D+ FG 
Sbjct: 208 AERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGV 267

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            +H+               L   YG   +V VA               NT++S YA    
Sbjct: 268 QLHT---------------LAVKYGLESEVAVA---------------NTLVSMYAKCKC 297

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             + ++LF  M  +    +++TWN +  GC++ G     L L   M+      DSV  V 
Sbjct: 298 LDDGWKLFGLMPRD----DLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVS 353

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L A + +     GKE+HG  VR C      + +AL+ +Y +C+ +R A  ++  +    
Sbjct: 354 LLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAID 413

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++  ++M+SGY     ++E+  +FR +   G+ PN V IAS+LP CA +A ++ G+E H 
Sbjct: 414 VVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHS 473

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y L+ A +     + ++L++MYA+ G++  +  +F  +S +DEVT+ S+I+ +   GE  
Sbjct: 474 YALKNA-YEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPE 532

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL LF EM    +K  +VT+ +VLSAC+    +  G K+   +     I   L   + +
Sbjct: 533 EALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG-KEIHGVVIKGPIRADLFAESAL 591

Query: 556 VDLYGRAGLLNKAKEIITKMP 576
           +D+YG+ G L  A  +   MP
Sbjct: 592 IDMYGKCGNLEWAHRVFESMP 612



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 233/500 (46%), Gaps = 46/500 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLE-KNPVLVPKLVTFYASFSLYNNACFL---VENSNIRY 139
           C     L+ G Q+H  A+  GL   +  L  +LV  Y     + +A  +   +       
Sbjct: 49  CVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAAC 108

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
            LPWN LI      G Y  AL  Y +M         D+ T+P V+K+C  +  +  GR+V
Sbjct: 109 ALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLV 168

Query: 198 HSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H        +  +FV +AL+ MY   G +  AR++FD M ERD V WN M+  Y   G  
Sbjct: 169 HRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSV 228

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
             A +LF +M+  G E                 NF  +   LS   T+            
Sbjct: 229 SSAVELFGDMRASGCE----------------PNFATLACFLSVSATESD---------- 262

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
                    L  G ++H  AV+        V N L++MY++CK L   + LF +     +
Sbjct: 263 ---------LFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           +TWN M+SG       +++  LF +M +SG+ P+ VT+ S+LP    +     GKE H Y
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           I+R  +  + + L ++LV++Y +   V  A+SV+D     D V  +++I+GY + G  + 
Sbjct: 374 IVRNCVHMD-VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQE 432

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE-RMTSIYGIFPQLEHFACM 555
           A+K+F  + +  I+P+ V + +VL AC+    +  GQ+     + + Y     +E  + +
Sbjct: 433 AVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE--SAL 490

Query: 556 VDLYGRAGLLNKAKEIITKM 575
           +D+Y + G L+ +  I +K+
Sbjct: 491 MDMYAKCGRLDLSHYIFSKI 510



 Score = 41.2 bits (95), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           ++L  C   ++L  G + H   +   +      L   LV MY  + +  +A +VF  + R
Sbjct: 44  AVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPR 103

Query: 476 RD---EVTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSACSHSGLVV 530
                 + +  LI G  + G+ R AL  + +M  + +   PD  T   V+ +C+  G + 
Sbjct: 104 GAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            G +   R     G+   +   + ++ +Y   GLL  A+++   M
Sbjct: 164 LG-RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM 207


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 331/590 (56%), Gaps = 13/590 (2%)

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQM 166
           P L ++    S+Y+    L +   I   +P      WNL IS Y   G  ++A+ VYK M
Sbjct: 69  PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM 128

Query: 167 -QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQ 224
            +   +  +  T+ ++L  C +   VD GR ++  I      S +FV + LV MY K G 
Sbjct: 129 LKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGL 188

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  A+R FD+M ER+ V  NTMI+     G+ +E+ +LF  ++E     + I+W  +  G
Sbjct: 189 IYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKER----DSISWTIMITG 244

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
            ++ G  +  L++   MR     +D       L AC  + AL  GK+IH   +R  + + 
Sbjct: 245 LMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDN 304

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V +AL+ MYS+C+ ++ A  +FK   +K++I+W +ML GY     +EE+  +F EM R
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQR 364

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +GVEP+  T+ S++  CA +A+L+ G +FHC  L   + +  + + N+L+ +Y + G   
Sbjct: 365 NGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLIS-FITVSNALITLYGKCGSTE 423

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            +  +F  M+ RDEV++T+L+AGY   G+    + LFE M  + +KPD VT + VLSACS
Sbjct: 424 NSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACS 483

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
            +GLV +G + FE M   +GI P ++H  C++DL GRAG L +A+  I  MP  P    W
Sbjct: 484 RAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGW 543

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
           ATLL +C++H +  IG+WAA+ L+   P+N   YVL++++YA+ G WDK+A++R  MRD 
Sbjct: 544 ATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDK 603

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            VRK PG +W+        F  DD S+    +IY  L  L   M + GYV
Sbjct: 604 RVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYV 653



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/492 (22%), Positives = 223/492 (45%), Gaps = 79/492 (16%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G+ S A   + ++ +  A+ ++   +F+ ++  C K + +  G+Q++   +  
Sbjct: 109 ISGYANYGSCSDAVRVY-KLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKF 167

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNA------------------------CFLVENSNI-- 137
           G   +  +   LV  Y    L  +A                        C ++E S    
Sbjct: 168 GFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLF 227

Query: 138 -----RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
                R  + W ++I+  +++G   EAL ++++M+      D FT+ SVL ACG ++ + 
Sbjct: 228 CGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALG 287

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G+ +H+  I   H+ ++FV +ALV MY K   +  A  +F +M +++ +SW  M+  Y 
Sbjct: 288 EGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYG 347

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G  +EA ++F EMQ  GVE +  T  ++                              
Sbjct: 348 QNGFSEEAVKIFFEMQRNGVEPDDFTLGSV------------------------------ 377

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                + +C+++ +L+ G + H  A+      +  V NALIT+Y +C    +++ LF   
Sbjct: 378 -----ISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEM 432

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             +  ++W ++L+GY     A E+  LF  M   G++P+ VT   +L  C+R   ++ G 
Sbjct: 433 NIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGL 492

Query: 432 EFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLI 485
           ++       +M  EH ++        ++++  R+G++ EA++  + M    D V + +L+
Sbjct: 493 QYF-----ESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLL 547

Query: 486 AGYGIQGEGRVA 497
           +   + G+  + 
Sbjct: 548 SSCRVHGDMEIG 559



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 211/458 (46%), Gaps = 42/458 (9%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y S+LK C E  +    + +H  I     +   F+ N L++ Y K G +  A  +FD + 
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQ-EEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           + +  SWNT++S Y+  GL  +  Q+F  M   +GV     +WN    G    G+    +
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGV-----SWNLAISGYANYGSCSDAV 122

Query: 296 ELLSRM-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
            +   M +     L+ +     L  CS    + LG++I+G  ++  +G    V + L+ M
Sbjct: 123 RVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDM 182

Query: 355 YS-------------------------------RCKDLRHAYILFKMTAEKSIITWNSML 383
           Y+                               RC  +  +  LF    E+  I+W  M+
Sbjct: 183 YTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMI 242

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           +G        E+  +FREM  +G   +  T  S+L  C  +  L  GK+ H Y++R    
Sbjct: 243 TGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTD-H 301

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
            +++ + ++LV+MY++   +  A++VF  M +++ +++T+++ GYG  G    A+K+F E
Sbjct: 302 KDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFE 361

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M +N ++PD  T+ +V+S+C++   + EG  QF     + G+   +     ++ LYG+ G
Sbjct: 362 MQRNGVEPDDFTLGSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALITLYGKCG 420

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHR-NTGIG 600
               +  + T+M      +  A L G  Q  + N  IG
Sbjct: 421 STENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIG 458


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/581 (35%), Positives = 326/581 (56%), Gaps = 13/581 (2%)

Query: 122 FSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQM-QSRRIRGD 174
            S Y+    L E   + + +P      WN LIS Y   GF  +++  Y  M  +     +
Sbjct: 82  LSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLN 141

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
                ++L    +   V  G  VH   +    +  +FV + LV MY K G V  AR+ FD
Sbjct: 142 RIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFD 201

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           +M E++ V +NT+I+        +++ QLF +MQE+    + I+W  +  G  + G  + 
Sbjct: 202 EMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEK----DSISWTAMIAGFTQNGLDRE 257

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
            ++L   MR +   +D       L AC  V AL+ GK++H   +R  Y +   V +AL+ 
Sbjct: 258 AIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVD 317

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY +CK ++ A  +F+    K++++W +ML GY     +EE+  +F +M  +G+EP+  T
Sbjct: 318 MYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFT 377

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           + S++  CA +A+L+ G +FHC  L   + +  + + N+LV +Y + G + ++  +F  M
Sbjct: 378 LGSVISSCANLASLEEGAQFHCRALVSGLIS-FITVSNALVTLYGKCGSIEDSHRLFSEM 436

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           S  DEV++T+L++GY   G+    L+LFE M  +  KPD VT + VLSACS +GLV +G 
Sbjct: 437 SYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGN 496

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           + FE M   + I P  +H+ CM+DL+ RAG L +A++ I KMP++P +  WA+LL +C+ 
Sbjct: 497 QIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRF 556

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           HRN  IG+WAAE LL+  P N+  Y+L++++YAA G W+++A +R  MRD G+RK PGC+
Sbjct: 557 HRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCS 616

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           W+   N    F  DD SN  + +IY  L  L   M   GYV
Sbjct: 617 WIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYV 657



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 221/466 (47%), Gaps = 46/466 (9%)

Query: 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMY 219
           L V KQ  S  +      Y  +LK C      D  ++    I A     +F+ N LVS Y
Sbjct: 3   LHVSKQFNSMSLSNH---YCELLKHCR-----DTKKIHCHIIKAFRNPEIFLLNNLVSAY 54

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            KF ++  ARR+FD+M +R+  SWNT++S+Y+      E  ++F  M       ++++WN
Sbjct: 55  AKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTR----DMVSWN 110

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
           ++       G     ++  + M     + L+ +A    L   S  G + LG ++HG  V+
Sbjct: 111 SLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVK 170

Query: 339 GCYGEYENVRNALITMYS-------------------------------RCKDLRHAYIL 367
             +  Y  V + L+ MYS                               RC  +  +  L
Sbjct: 171 FGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQL 230

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F    EK  I+W +M++G+T      E+  LFREM    +E +  T  S+L  C  V  L
Sbjct: 231 FYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMAL 290

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
           Q GK+ H YI+R   + +++ + ++LV+MY +   +  A++VF  M+ ++ V++T+++ G
Sbjct: 291 QEGKQVHAYIIRTD-YQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVG 349

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           YG  G    A+K+F +M  N I+PD  T+ +V+S+C++   + EG  QF     + G+  
Sbjct: 350 YGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEG-AQFHCRALVSGLIS 408

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
            +     +V LYG+ G +  +  + ++M Y    +  A + G  Q 
Sbjct: 409 FITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQF 454



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 187/388 (48%), Gaps = 47/388 (12%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           EKN V+   L+      S   ++  L  +   +  + W  +I+ + ++G   EA+ ++++
Sbjct: 205 EKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFRE 264

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           M+   +  D +T+ SVL ACG +M +  G+ VH+  I   ++ ++FV +ALV MY K   
Sbjct: 265 MRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKS 324

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  A  +F KM  ++ VSW  M+  Y   G  +EA ++F +MQ  G+E +  T  ++   
Sbjct: 325 IKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSV--- 381

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           + +C+++ +L+ G + H  A+      +
Sbjct: 382 --------------------------------ISSCANLASLEEGAQFHCRALVSGLISF 409

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V NAL+T+Y +C  +  ++ LF   +    ++W +++SGY     A E+  LF  M  
Sbjct: 410 ITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLA 469

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEMYAR 459
            G +P+ VT   +L  C+R   +Q G +     +  +M  EH ++     +  ++++++R
Sbjct: 470 HGFKPDKVTFIGVLSACSRAGLVQKGNQ-----IFESMIKEHRIIPIEDHYTCMIDLFSR 524

Query: 460 SGKVPEAKSVFDLMS-RRDEVTYTSLIA 486
           +G++ EA+   + M    D + + SL++
Sbjct: 525 AGRLEEARKFINKMPFSPDAIGWASLLS 552



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 3/244 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   G   +A + F  +R+     D    +F  ++  CG V AL +GKQ+HA  I    +
Sbjct: 249 FTQNGLDREAIDLFREMRLENLEMDQY--TFGSVLTACGGVMALQEGKQVHAYIIRTDYQ 306

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   LV  Y       +A  +    N +  + W  ++  Y ++G+  EA+ ++  M
Sbjct: 307 DNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDM 366

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF-VHNALVSMYGKFGQV 225
           Q+  I  D+FT  SV+ +C  +  ++ G   H         S   V NALV++YGK G +
Sbjct: 367 QNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSI 426

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + + RLF +M   D VSW  ++S YA  G   E  +LF  M   G + + +T+  +   C
Sbjct: 427 EDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSAC 486

Query: 286 LRTG 289
            R G
Sbjct: 487 SRAG 490


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 323/560 (57%), Gaps = 8/560 (1%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           R  + WN LIS Y   G   +++  Y  M         +  T+ ++L    +   V  GR
Sbjct: 104 RDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGR 163

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  +      S +FV + LV MY K G +  AR++FD++ E++ V +NT+I      G
Sbjct: 164 QIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCG 223

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +++ +LF EM+E     + I+W ++  G  + G  +  +++   M+ +   +D     
Sbjct: 224 RVEDSKRLFFEMRER----DSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFG 279

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC  V AL+ GK++H   +R  Y +   V +AL+ MY +CK+++ A  +FK    K
Sbjct: 280 SVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCK 339

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++++W +ML GY     +EE+   F +M + G+EP+  T+ S++  CA +A+L+ G +FH
Sbjct: 340 NVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFH 399

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              L   + +  + + N+LV +Y + G + ++  +F+ +S +DEVT+T+L++GY   G+ 
Sbjct: 400 ARALTSGLIS-FITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKA 458

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
              + LFE M  + +KPD VT + VLSACS +GLV +G + FE M + +GI P  +H+ C
Sbjct: 459 NETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTC 518

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           M+DL+ RAG + +A+  I KMP++P +  WATLL +C+ + N  IG+WAAE L+E  P N
Sbjct: 519 MIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHN 578

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           +  YVL++++YAA G W+++A++R  MRD G+RK PGC+W+   N    F  DD SN  +
Sbjct: 579 TASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFS 638

Query: 675 QEIYPLLGGLTELMKDAGYV 694
            +IY  L  L   M   GYV
Sbjct: 639 DQIYSELEKLNYKMIKEGYV 658



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 217/459 (47%), Gaps = 43/459 (9%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y ++LK C E  +    + +HS I     +   F+ N L+S Y K G +  A ++FD+M 
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEM-QEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             +  SWNT++SAY+  G   E   LF  M + +GV     +WN++  G    G     +
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGV-----SWNSLISGYAGCGLIYQSV 126

Query: 296 ELLSRMRTQETY--LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
           +  + M   +    L+ +     L   S  G +KLG++IHG  V+  +  Y  V + L+ 
Sbjct: 127 KAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVD 186

Query: 354 MYS-------------------------------RCKDLRHAYILFKMTAEKSIITWNSM 382
           MYS                               RC  +  +  LF    E+  I+W SM
Sbjct: 187 MYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSM 246

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++G+T      ++  +FREM    ++ +  T  S+L  C  V  LQ GK+ H YI+R   
Sbjct: 247 ITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTD- 305

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           + +++ + ++LV+MY +   +  A++VF  M+ ++ V++T+++ GYG  G    A+K F 
Sbjct: 306 YKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFS 365

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M K  I+PD  T+ +V+S+C++   + EG  QF       G+   +     +V LYG+ 
Sbjct: 366 DMQKYGIEPDDFTLGSVISSCANLASLEEGA-QFHARALTSGLISFITVSNALVTLYGKC 424

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHR-NTGIG 600
           G +  +  +  ++ +       A + G  Q  + N  IG
Sbjct: 425 GSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIG 463



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 3/253 (1%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
           I+    +  F   G    A + F  +++     D    +F  ++  CG V AL +GKQ+H
Sbjct: 241 ISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQY--TFGSVLTACGGVMALQEGKQVH 298

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
           A  I    + N  +   LV  Y       +A  + +    +  + W  ++  Y ++G+  
Sbjct: 299 AYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSE 358

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF-VHNALV 216
           EA+  +  MQ   I  D+FT  SV+ +C  +  ++ G   H+        S   V NALV
Sbjct: 359 EAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALV 418

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
           ++YGK G ++ + RLF+++  +D V+W  ++S YA  G   E   LF  M   G++ + +
Sbjct: 419 TLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKV 478

Query: 277 TWNTIAGGCLRTG 289
           T+  +   C R G
Sbjct: 479 TFIGVLSACSRAG 491



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 14/233 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C  + +L +G Q HA A+  GL     +   LVT Y       ++  L    
Sbjct: 378 TLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEI 437

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG- 194
           + +  + W  L+S Y + G   E + +++ M +  ++ D  T+  VL AC     V+ G 
Sbjct: 438 SFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGN 497

Query: 195 RVVHSCIDACHEWSLFVH-NALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
           ++  S I+      +  H   ++ ++ + G+++ AR   +KM    DA+SW T++S+   
Sbjct: 498 QIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRF 557

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           Y +  + K A +  +E+        V+  +  A         KG  E ++R+R
Sbjct: 558 YGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAA--------KGKWEEVARLR 602


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 213/617 (34%), Positives = 348/617 (56%), Gaps = 22/617 (3%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWN 144
           VK+ +Q KQLHA  +   L  +P L+  +++ Y++ +L +++  L+ NS    P  L W 
Sbjct: 18  VKSKSQAKQLHAQILRTSLP-SPSLLSTILSIYSNLNLLHDS-LLIFNSLPSPPTTLAWK 75

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DA 203
            +I  Y   G +  +L  + QM +     D+  +PSVLK+C  M D+ FG  VH CI   
Sbjct: 76  SIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRL 135

Query: 204 CHEWSLFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
              + L+  NAL++MY KF    +V+  +++FD+    D  S     S Y   G  ++ F
Sbjct: 136 GMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYL--GSLRKVF 193

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS--VATVIGLG 318
           ++  +        ++++WNT+  G  + G  +  L ++  M   +   DS  +++V+ + 
Sbjct: 194 EMMPKR-------DIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIF 246

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           A  +V  LK GKEIHG A+R  Y     + ++LI MY++C  +  +  +F M  +   I+
Sbjct: 247 A-EYVNLLK-GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGIS 304

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WNS+++G       +E    F++M  + ++PN+V+ +SI+P CA +  L  GK+ H YI+
Sbjct: 305 WNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYII 364

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R + F+ ++ + ++LV+MYA+ G +  A+ +FD M   D V++T++I GY + G    A+
Sbjct: 365 R-SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAI 423

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LF+ M    +KP++V  +AVL+ACSH+GLV E  K F  MT  Y I P LEH+A + DL
Sbjct: 424 SLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADL 483

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GR G L +A E I+ M   PT ++W+TLL AC++H+N  + E  ++KL    P+N G Y
Sbjct: 484 LGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAY 543

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+Y+A G W    K+R  MRD G++K P C+W++  N    F+  D S+     I 
Sbjct: 544 VLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRIN 603

Query: 679 PLLGGLTELMKDAGYVV 695
             L  L E M+  GYV+
Sbjct: 604 EALKVLLEQMEREGYVL 620



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 95/234 (40%), Gaps = 37/234 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+ I+  C  +  L  GKQLH   I    + N  +   LV  YA       A ++ +  
Sbjct: 339 SFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKM 398

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +   + W  +I  Y   G   +A+ ++K+M+   ++ +   + +VL AC     VD   
Sbjct: 399 ELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAW 458

Query: 196 VVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
              + +   +     L  + A+  + G+ G+++ A      M +E     W+T+++A   
Sbjct: 459 KYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRV 518

Query: 250 -------------------------------YASKGLWKEAFQLFVEMQEEGVE 272
                                          Y++ G WK+A +L + M+++G++
Sbjct: 519 HKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMK 572


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 224/667 (33%), Positives = 359/667 (53%), Gaps = 45/667 (6%)

Query: 33  EHI-MRINLLE--TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           EH+ +++++L    LK +A   +L  A   F R+        +V+  +A ++  CG+   
Sbjct: 103 EHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVR--LVVGDYACLLQLCGENLD 160

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L +G+++H   I  G E N  ++  +++ YA     +NA  + E    +  + W  L++ 
Sbjct: 161 LKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAG 220

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           Y ++G    AL +  QMQ    + D+ T  S+L A  +M  +  GR +H     +  E  
Sbjct: 221 YAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESL 280

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           + V NAL+ MY K G   +AR +F  M  +  VSWNTMI   A  G  +EAF  F++M +
Sbjct: 281 VNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLD 340

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALK 327
           EG                         E+ +R+           T++G L AC+++G L+
Sbjct: 341 EG-------------------------EVPTRV-----------TMMGVLLACANLGDLE 364

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G  +H    +       +V N+LI+MYS+CK +  A  +F    EK+ +TWN+M+ GY 
Sbjct: 365 RGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFN-NLEKTNVTWNAMILGYA 423

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
              C +E+  LF  M   G++ +  T+  ++   A  +  +  K  H   +R  M N ++
Sbjct: 424 QNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDN-NV 482

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            +  +LV+MYA+ G +  A+ +FD+M  R  +T+ ++I GYG  G G+  L LF EM K 
Sbjct: 483 FVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKG 542

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            +KP+ +T ++V+SACSHSG V EG   F+ M   Y + P ++H++ MVDL GRAG L+ 
Sbjct: 543 AVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDD 602

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A   I +MP  P  ++   +LGAC+IH+N  +GE AA+KL +  P+  GY+VL+AN+YA+
Sbjct: 603 AWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYAS 662

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
              WDK+AKVRT M D G+ K PGC+WV+  N    F    T++ ++++IY  L  L + 
Sbjct: 663 NSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDE 722

Query: 688 MKDAGYV 694
           +K AGYV
Sbjct: 723 IKAAGYV 729



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 235/486 (48%), Gaps = 59/486 (12%)

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           I  G     +   K+++ +  F   + A  + E+  ++  + +++++  Y ++    +AL
Sbjct: 71  IKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDAL 130

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMY 219
           C + +M    +R     Y  +L+ CGE +D+  GR +H   I    E +LFV  A++S+Y
Sbjct: 131 CFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLY 190

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K  Q+D A ++F++M  +D                                   +++W 
Sbjct: 191 AKCRQIDNAYKMFERMQHKD-----------------------------------LVSWT 215

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           T+  G  + G+ K  L+L+ +M+      DSV  V  L A + + AL++G+ IHG A R 
Sbjct: 216 TLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRS 275

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +    NV NAL+ MY +C   R A ++FK    K++++WN+M+ G      +EE+   F
Sbjct: 276 GFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATF 335

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M   G  P  VT+  +L  CA + +L+ G   H  +L +   + ++ + NSL+ MY++
Sbjct: 336 LKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVH-KLLDKLKLDSNVSVMNSLISMYSK 394

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
             +V  A S+F+ + + + VT+ ++I GY   G  + AL LF  M    IK D  T+V V
Sbjct: 395 CKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGV 453

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM----------VDLYGRAGLLNKAK 569
           ++A   +   V  Q ++     I+G+  +    ACM          VD+Y + G +  A+
Sbjct: 454 ITAL--ADFSVNRQAKW-----IHGLAVR----ACMDNNVFVSTALVDMYAKCGAIKTAR 502

Query: 570 EIITKM 575
           ++   M
Sbjct: 503 KLFDMM 508


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 220/679 (32%), Positives = 358/679 (52%), Gaps = 55/679 (8%)

Query: 74  LDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           LDS  FA ++  C K K++ + + +HA  I         +  +LV  Y       +A  +
Sbjct: 17  LDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKV 76

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-------IRG----------- 173
            ++   R    WN ++    + G   EAL ++K M  R        + G           
Sbjct: 77  FDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEAL 136

Query: 174 -------------DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVH--NALVSM 218
                        + +++ S L AC  +MD+  G  +H  I A   +SL V+  +ALV M
Sbjct: 137 RFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLI-AKSRYSLDVYMGSALVDM 195

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K   V  A+R FD M  R+ VSWN++I+ Y   G   +A ++FV M   G+E + IT 
Sbjct: 196 YSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITL 255

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV----ATVIGLGACSHVGALKLGKEIHG 334
            ++A  C      +  L++ +R+   + Y + +    A V     C  V   +L      
Sbjct: 256 ASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARL--VFDR 313

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             +R    E      ++++ Y++   ++ A ++F    E+++++WN++++GYT     EE
Sbjct: 314 MPLRDVVSE-----TSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEE 368

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF-----NEHLLL 449
           +  LF  + R  + P + T  ++L  CA +A+L+ G++ H +IL+   +     +  + +
Sbjct: 369 AVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFV 428

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            NSL++MY + G V + + VF+ M  RD V++ ++I GY   G G  AL++F EM  +  
Sbjct: 429 GNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGE 488

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +PDHVTM+ VLSACSH+GLV EG+  F+ MT  +G+ P  +H+ CMVDL GRAG L++A 
Sbjct: 489 RPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEAN 548

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
            +I  MP  P + +W +LL AC++H N  +G++ AE+LLE  P NSG YVL++NMYA  G
Sbjct: 549 NLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELG 608

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W  + +VR  MR +GV K PGC+W+   +    F+V D  +   ++IY +L  LTE MK
Sbjct: 609 RWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMK 668

Query: 690 DAGYVVKEEFCSEEEIVEE 708
             GYV + +   ++E  EE
Sbjct: 669 RVGYVPEAD---DDEPYEE 684



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 219/452 (48%), Gaps = 25/452 (5%)

Query: 57  FEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           FE   R  +   S D VL+  SF   +  C  +  L+ G Q+H          +  +   
Sbjct: 132 FEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSA 191

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV  Y+   +  +A    ++ ++R  + WN LI+ Y ++G   +AL V+ +M +  I  D
Sbjct: 192 LVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPD 251

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLF 232
             T  SV  AC  +  +  G  +H+ +    ++   L + NALV MY K  +V+ AR +F
Sbjct: 252 EITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVF 311

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D+M  RD VS  +M+S YA     K A  +F  M E     NV++WN +  G  + G  +
Sbjct: 312 DRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMER----NVVSWNALIAGYTQNGENE 367

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY----GEYEN-- 346
             + L   ++ +  +         L AC+++  LKLG++ H   ++  +    GE  +  
Sbjct: 368 EAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIF 427

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V N+LI MY +C  +    ++F+   E+  ++WN+M+ GY       E+  +FREM  SG
Sbjct: 428 VGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSG 487

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEMYARSG 461
             P++VT+  +L  C+    ++ G+   CY   ++M  EH L+     +  +V++  R+G
Sbjct: 488 ERPDHVTMIGVLSACSHAGLVEEGR---CYF--QSMTIEHGLVPVKDHYTCMVDLLGRAG 542

Query: 462 KVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQG 492
            + EA ++   M    D V + SL+A   + G
Sbjct: 543 CLDEANNLIQTMPMEPDAVVWGSLLAACKVHG 574



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 133/302 (44%), Gaps = 32/302 (10%)

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC---KDLR 362
           ++LDS      L  C    ++   + +H   ++  +     ++N L+ +Y +C   +D R
Sbjct: 15  SFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDAR 74

Query: 363 ----------------------------HAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
                                        A  LFK   E+   +WN+M+SG+   D  EE
Sbjct: 75  KVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEE 134

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +     +M       N  +  S L  CA + +L  G + H  I  ++ ++  + + ++LV
Sbjct: 135 ALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIA-KSRYSLDVYMGSALV 193

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MY++   V  A+  FD M  R+ V++ SLI  Y   G    AL++F  M    I+PD +
Sbjct: 194 DMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEI 253

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           T+ +V SAC+    + EG +   R+         L     +VD+Y +   +N+A+ +  +
Sbjct: 254 TLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDR 313

Query: 575 MP 576
           MP
Sbjct: 314 MP 315


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 210/614 (34%), Positives = 345/614 (56%), Gaps = 11/614 (1%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           +L Q  Q+HA  +  GL     L+PKL+  ++     + A F+++ +       WN LI 
Sbjct: 11  SLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPTDFSWNSLIR 66

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS 208
            Y   G    +L +Y +M     +  NFT+P VLKAC  +  V  G  +H+ +      S
Sbjct: 67  AYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGS 126

Query: 209 -LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            LFV N+L+ MY K  ++D AR  +D M  RD VSWN++IS Y   G  ++A  LF EM 
Sbjct: 127 DLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMP 186

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIGLGACSHVGA 325
              +  NV+ W  +  G  + G+F  +L L  +M     E   ++   V  L ACS +  
Sbjct: 187 ---MRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCN 243

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
            ++G+ +              +  ALI MYS+C D+  A+ +F   + K++ +WN++++G
Sbjct: 244 YEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITG 303

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
                  EE+  L+R M    V+PN +T+ ++L  CA +  L+ G+E H Y+ R  + + 
Sbjct: 304 CVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGL-DL 362

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           +++L  +LV+MYA+ GK+ +A  +F   S +D   + ++I G    G+GR +L +F +M 
Sbjct: 363 NVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMV 422

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           +  ++P+ VT + VLSAC+HSGLV EG+ QF  M   +G+ P+LEH+ACMVDL GRAG L
Sbjct: 423 RAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHL 482

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
            +A E++  M   P S +W  LL AC+IHRN  + +  +E ++ ++  N G+ +L++N+Y
Sbjct: 483 KEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIY 542

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           A++G W  +A+VR  +++  ++K  GC+WV+   V   F+V+DT+++++ EIY     L 
Sbjct: 543 ASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIYGAYEILV 602

Query: 686 ELMKDAGYVVKEEF 699
             +K  GYV   +F
Sbjct: 603 NHLKAEGYVANFDF 616



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 205/469 (43%), Gaps = 71/469 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  + ++ +G+Q+H   + LG   +  +   L+  Y      ++A    ++ 
Sbjct: 95  TFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDM 154

Query: 136 NIRYPLPWNLLISLYV--------------------------------RDGFYAEALCVY 163
             R  + WN +IS YV                                ++G + E L ++
Sbjct: 155 GFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLF 214

Query: 164 KQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYG 220
           +QM   +  ++ +  T   +L AC  + + + GR +   ID      +  +  AL+ MY 
Sbjct: 215 RQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYS 274

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G V+ A R+FD +  ++  SWN +I+     GL +EA  L+  M+ + V+ N IT   
Sbjct: 275 KCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVN 334

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +                                   L AC+ +GAL+LG+E+H    R  
Sbjct: 335 V-----------------------------------LSACAGLGALELGREVHLYLGRNG 359

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                 +  AL+ MY++C  +  A ++F  T+EK +  WN+M+ G  +     +S  +F 
Sbjct: 360 LDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFS 419

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M R+GV+PN VT   +L  C     ++ G+     +  +   +  L  +  +V++  R+
Sbjct: 420 QMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRA 479

Query: 461 GKVPEA-KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           G + EA + V +++   D + + +L++   I     +A K+ E +  +Q
Sbjct: 480 GHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQ 528



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G L +A + +  ++  +   + +  +  +++  C  + AL  G+++H      GL+ N +
Sbjct: 308 GLLEEAIDLYRHMKAQSVKPNEI--TLVNVLSACAGLGALELGREVHLYLGRNGLDLNVI 365

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L   LV  YA     ++AC +   ++ +    WN +I      G   ++L V+ QM    
Sbjct: 366 LATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAG 425

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS--LFVHNALVSMYGKFGQVDVA 228
           ++ ++ T+  VL AC     V+ GRV  S +   H  S  L  +  +V + G+ G +  A
Sbjct: 426 VQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEA 485

Query: 229 RRLFDKML-ERDAVSWNTMISA 249
             L   ML   D++ W  ++SA
Sbjct: 486 YELVQNMLIPPDSIIWGALLSA 507


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 229/712 (32%), Positives = 353/712 (49%), Gaps = 92/712 (12%)

Query: 62  RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS 121
           R  + AAS     D  A ++  C        G+ +HA A+  GL  +  L   L+++YA 
Sbjct: 14  RTAMAAASDS---DHCARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAG 70

Query: 122 FSLYNNACFLVENSNIRYPLP--------WNLLISLYVRDGFYAEALCVYKQMQSRR--- 170
            +      F  E   +   +P        WN L+SLY + G  A+A  V+ +M  R    
Sbjct: 71  PAAGGGGGFR-EARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVS 129

Query: 171 ----------------------------IRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
                                       +    FT  +VL +C        GR VHS + 
Sbjct: 130 WTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVV 189

Query: 202 ----DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
                +C    + V N++++MYGK G  + AR +F++M ER   SWN M+S  A  G   
Sbjct: 190 KLGLSSC----VPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMD 245

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG- 316
            A  LF  M +      +++WN +  G  + G     L   SRM +  T      T+   
Sbjct: 246 LALSLFENMPDR----TIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSV 301

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK----------------- 359
           L AC+++G + +GK++H   +R        V NALI+MY++                   
Sbjct: 302 LSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADL 361

Query: 360 ----------------DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
                           D++HA  +F + + + ++ W +M+ GY      +E+  LFR M 
Sbjct: 362 NVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMI 421

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           RSG EPN  T+A++L +CA +A L++GK+ HC  +R ++  +   + NS+V MYARSG +
Sbjct: 422 RSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIR-SLQEQSSSVSNSIVTMYARSGSL 480

Query: 464 PEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           P A+ VFD +  R++ VT+TS+I      G G  A+ LFEEM +  +KPD +T V VLSA
Sbjct: 481 PWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSA 540

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C+H G V EG++ F+++   +GI P++ H+ACMVDL  RAGL ++A+E I +MP  P + 
Sbjct: 541 CTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAI 600

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
            W +LL AC++H+N  + E AAEKLL   P NSG Y  ++N+Y+A G W+  AK+    +
Sbjct: 601 AWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRK 660

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           D  V+K  G +W   GN    F  DD  + Q   +Y     + + +K AG+V
Sbjct: 661 DKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFV 712


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 230/707 (32%), Positives = 362/707 (51%), Gaps = 113/707 (15%)

Query: 74  LDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS---------- 121
           LDS  F+ ++  C + ++     ++HAC I         +  +L+  Y            
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKL 76

Query: 122 ---------FSLYNNAC------FLVENSNIRYPLP------WNLLISLYVRDGFYAEAL 160
                    FS  +  C      FL +  +I   +P      WN +IS + + G + EAL
Sbjct: 77  FDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEAL 136

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMY 219
             + QM       + +++ S L AC  + D+  G  +HS +   +  S +++ +ALV MY
Sbjct: 137 VYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMY 196

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G+V+ A+ +FD+M  R  VSWN++I+ Y   G   EA ++FVEM + GVE + +T  
Sbjct: 197 SKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVT-- 254

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
                                          +A+V+   AC+ + A+K G++IH   V+ 
Sbjct: 255 -------------------------------LASVV--SACATISAIKEGQQIHARVVK- 280

Query: 340 CYGEYEN---VRNALITMYSRCKDLRHAYILFKMTAEKS--------------------- 375
           C  E+ N   + NAL+ MY++C  +  A I+F M   +S                     
Sbjct: 281 C-DEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVAR 339

Query: 376 ----------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
                     +ITWN++++G T     EE+  LFR + R  V P + T  ++L  CA +A
Sbjct: 340 YMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLA 399

Query: 426 NLQHGKEFHCYILR---RAMFNE--HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           +LQ G++ H ++L+   R  + E   + + NSL++MY + G V     VF  M  +D V+
Sbjct: 400 DLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVS 459

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           + ++I GY   G G  AL++F +M ++   PDHVTM+ VL ACSH+GL+ EG+  F  MT
Sbjct: 460 WNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMT 519

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
           + +G+ P  +H+ CMVDL GRAG L +AK +I +M   P + +W +LL AC++HRN  +G
Sbjct: 520 AQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLG 579

Query: 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           E+  +KLLE  PENSG YVL++NMYA    W  + +VR  MR  GV K PGC+W++    
Sbjct: 580 EYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGE 639

Query: 661 FSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV---KEEFCSEEE 704
            + F+V D  + + +EIY +L  + + MK AGYV      EF  +EE
Sbjct: 640 LNVFMVKDKRHARKKEIYMVLRTILQQMKQAGYVPYVGSNEFDEDEE 686



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 143/311 (45%), Gaps = 32/311 (10%)

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
           L+  ++    +LDS      L  C+   + +    +H   ++  +     ++N LI +Y 
Sbjct: 6   LVKHLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYG 65

Query: 357 RCKDLRHAYILFKMTAEKSIIT-------------------------------WNSMLSG 385
           +C  +  A  LF    E++I +                               WNSM+SG
Sbjct: 66  KCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISG 125

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           +      +E+   F +M   G   N  +  S L  CA + +L+ G + H  + R    ++
Sbjct: 126 FEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSD 185

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
            + + ++LV+MY++ G+V  A+SVFD M+ R  V++ SLI  Y   G    ALK+F EM 
Sbjct: 186 -VYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMI 244

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           K  ++PD VT+ +V+SAC+    + EGQ+   R+         L     ++D+Y +   +
Sbjct: 245 KCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRI 304

Query: 566 NKAKEIITKMP 576
           N+A+ I   MP
Sbjct: 305 NEARIIFDMMP 315


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 211/617 (34%), Positives = 335/617 (54%), Gaps = 13/617 (2%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---SFSLYNNACFLVENS--NIRYP 140
           K K +   KQ+H+  I  GL     +  KL+ F A   S  L        EN   +    
Sbjct: 37  KCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNV 96

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
             WN LI  Y        +L ++ +M    ++ ++ T+P + K+C +      G+ +H+ 
Sbjct: 97  FIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAH 156

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +     ++  VH +++ MY   G++D AR +FDK   RDAVS+  +I+ Y S+G   +A
Sbjct: 157 ALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDA 216

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF E+  +    +V++WN +  G +++G F+  +     M+      +    V+ L A
Sbjct: 217 RRLFDEIPVK----DVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSA 272

Query: 320 CSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           C H  + +LGK I GS VR   +G    + NALI MY +C +   A  LF    EK +I+
Sbjct: 273 CGHTRSGELGKWI-GSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVIS 331

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M+ GY++L   EE+  LF  M RS V+PN VT   IL  CA +  L  GK  H YI 
Sbjct: 332 WNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYID 391

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +    + +  LW SL++MYA+ G +  A+ VF  M  R+  ++ ++++G+ + G    AL
Sbjct: 392 KNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERAL 451

Query: 499 KLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
            LF EM NK   +PD +T V VLSAC+ +GLV  G + F  M   YGI P+L+H+ CM+D
Sbjct: 452 ALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMID 511

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L  RA    +A+ ++  M   P  A+W +LL AC+ H     GE+ AE+L +  PEN+G 
Sbjct: 512 LLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGA 571

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           +VL++N+YA  G WD +A++RT + D G++K+PGC  ++       FLV D  + +   I
Sbjct: 572 FVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNI 631

Query: 678 YPLLGGLTELMKDAGYV 694
           Y +L  + +L+++ G+V
Sbjct: 632 YKMLNEVDKLLEENGFV 648



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 140/542 (25%), Positives = 233/542 (42%), Gaps = 121/542 (22%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +   C K KA  +GKQLHA A+ L L  NP +   ++  YAS    + A  + + S
Sbjct: 133 TFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKS 192

Query: 136 NIRYP-------------------------------LPWNLLISLYVRDGFYAEALCVYK 164
           ++R                                 + WN +IS YV+ G + EA+  + 
Sbjct: 193 SLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY 252

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           +MQ   +  +  T   VL ACG     + G+ + S + D     +L + NAL+ MY K G
Sbjct: 253 EMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCG 312

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           + D+AR LFD + E+D +SWNTMI  Y+   L++EA  LF  M    V+ N +T      
Sbjct: 313 ETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVT------ 366

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                  F G+L                       AC+ +GAL LGK +H    +     
Sbjct: 367 -------FLGILH----------------------ACACLGALDLGKWVHAYIDK----- 392

Query: 344 YENVRN--------ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
             N+RN        +LI MY++C  +  A  +F+    +++ +WN+MLSG+     AE +
Sbjct: 393 --NLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERA 450

Query: 396 AFLFREMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
             LF EM   G+  P+ +T   +L  C +   +  G ++                + S++
Sbjct: 451 LALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQY----------------FRSMI 494

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           + Y  S K+     + DL++R ++     ++                  M   +++PD  
Sbjct: 495 QDYGISPKLQHYGCMIDLLARAEKFEEAEIL------------------MKNMEMEPDGA 536

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIIT 573
              ++LSAC   G V  G+   ER+   + + P+    F  + ++Y  AG  +    I T
Sbjct: 537 IWGSLLSACKAHGRVEFGEYVAERL---FQLEPENAGAFVLLSNIYAGAGRWDDVARIRT 593

Query: 574 KM 575
           ++
Sbjct: 594 RL 595


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  368 bits (944), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 215/622 (34%), Positives = 336/622 (54%), Gaps = 41/622 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S + ++  C  ++  ++GK +H   I LG + +P     LV  YA      +A  + E  
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEK- 318

Query: 136 NIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
            I+ P  + WN +I+  V    + +AL +  QM+   I  + FT  S LKAC  M   + 
Sbjct: 319 -IKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKEL 377

Query: 194 GRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR +HS +     E  LFV   LV MY K   ++ AR  F+ + E+D ++WN +IS Y+ 
Sbjct: 378 GRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 437

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                EA  LFVEM +EG+  N  T +TI                          L S A
Sbjct: 438 YWEDMEALSLFVEMHKEGIGFNQTTLSTI--------------------------LKSTA 471

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            +  +  C         +++HG +V+  +     V N+LI  Y +C  +  A  +F+   
Sbjct: 472 GLQVVHVC---------RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECT 522

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
              ++++ SM++ Y      EE+  LF EM    ++P+    +S+L  CA ++  + GK+
Sbjct: 523 IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ 582

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H +IL+   F   +   NSLV MYA+ G + +A   F  ++ R  V+++++I G    G
Sbjct: 583 LHVHILKYG-FVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHG 641

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            GR AL+LF +M K  + P+H+T+V+VL AC+H+GLV E +  FE M  ++G  P  EH+
Sbjct: 642 HGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHY 701

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           ACM+DL GRAG +N+A E++ KMP+   +++W  LLGA +IH++  +G  AAE L    P
Sbjct: 702 ACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEP 761

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           E SG +VL+AN+YA+ G W+ +A+VR  MRD  V+K PG +W++  +    FLV D S+ 
Sbjct: 762 EKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHY 821

Query: 673 QAQEIYPLLGGLTELMKDAGYV 694
           ++QEIY  L  L++LM  AGYV
Sbjct: 822 RSQEIYAKLDELSDLMDKAGYV 843



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/498 (28%), Positives = 241/498 (48%), Gaps = 40/498 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S++ ++  C   K+L  G Q+HA     GL  +P +   L+  Y+    +  A  LV+ S
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDES 117

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           +    + W+ LIS Y ++G    AL  + +M    ++ + FT+ SVLKAC  + D+  G+
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGK 177

Query: 196 VVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH  +     E  +FV N LV MY K  +   ++RLFD++ ER+ VSWN + S Y    
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQID 237

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF EM   G++ N  + +++   C                             
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC----------------------------- 268

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
            GL   S       GK IHG  ++  Y       NAL+ MY++  DL  A  +F+   + 
Sbjct: 269 TGLRDSSR------GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP 322

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            I++WN++++G    +  E++  L  +M RSG+ PN  T++S L  CA +   + G++ H
Sbjct: 323 DIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLH 382

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             +++  M ++ L +   LV+MY++   + +A+  F+L+  +D + + ++I+GY    E 
Sbjct: 383 SSLMKMDMESD-LFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWED 441

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL-VVEGQKQFERMTSIYGIFPQLEHFA 553
             AL LF EM+K  I  +  T+  +L   S +GL VV   +Q   ++   G    +    
Sbjct: 442 MEALSLFVEMHKEGIGFNQTTLSTILK--STAGLQVVHVCRQVHGLSVKSGFHSDIYVVN 499

Query: 554 CMVDLYGRAGLLNKAKEI 571
            ++D YG+   +  A+ I
Sbjct: 500 SLIDSYGKCSHVEDAERI 517



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 186/382 (48%), Gaps = 37/382 (9%)

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + N L+++Y K      AR+L D+  E D VSW+ +IS YA  GL   A   F EM   G
Sbjct: 93  IRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG 152

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           V+ N  T++++                                   L ACS V  L++GK
Sbjct: 153 VKCNEFTFSSV-----------------------------------LKACSIVKDLRIGK 177

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           ++HG  V   +     V N L+ MY++C +   +  LF    E+++++WN++ S Y  +D
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQID 237

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
              E+  LF EM  SG++PN  +++S++  C  + +   GK  H Y+++   ++      
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLG-YDWDPFSA 296

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+LV+MYA+ G + +A SVF+ + + D V++ ++IAG  +      AL+L  +M ++ I 
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGIC 356

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           P+  T+ + L AC+  GL   G++    +  +  +   L     +VD+Y +  LL  A+ 
Sbjct: 357 PNIFTLSSALKACAGMGLKELGRQLHSSLMKM-DMESDLFVSVGLVDMYSKCDLLEDARM 415

Query: 571 IITKMPYTPTSAMWATLLGACQ 592
               +P     A  A + G  Q
Sbjct: 416 AFNLLPEKDLIAWNAIISGYSQ 437



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 145/286 (50%), Gaps = 15/286 (5%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  C    +L+ G +IH    +    +  ++RN LI +YS+C++  +A  L   ++E  +
Sbjct: 63  LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDL 122

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W++++SGY        +   F EM   GV+ N  T +S+L  C+ V +L+ GK+ H  
Sbjct: 123 VSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGV 182

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           ++    F   + + N+LV MYA+  +  ++K +FD +  R+ V++ +L + Y        
Sbjct: 183 VVVSG-FEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGE 241

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL----EHF 552
           A+ LF EM  + IKP+  ++ ++++AC+       G +   R   I+G   +L    + F
Sbjct: 242 AVGLFYEMVLSGIKPNEFSLSSMVNACT-------GLRDSSRGKIIHGYLIKLGYDWDPF 294

Query: 553 A--CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           +   +VD+Y + G L  A  +  K+   P    W  ++  C +H +
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEH 339


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 228/665 (34%), Positives = 354/665 (53%), Gaps = 43/665 (6%)

Query: 44   LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
            L  +A  G  SK  + F+ +R      D    ++  I+  C  ++ L  G+QLH+  I  
Sbjct: 422  LGGYAQNGYASKVMKLFSEMRGCGFWPDEF--TYTSILSACACLECLEMGRQLHSFIIKH 479

Query: 104  GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
              E N  +   LV  YA       A    E    R  + WN +I  YV++    EA  ++
Sbjct: 480  NFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMF 539

Query: 164  KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            ++M    I  D  +  S+L  C  +  ++ G  VH   + +  +  L+  ++L+ MY K 
Sbjct: 540  RRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKC 599

Query: 223  GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            G ++ AR +F  M  R  VS N +I+ YA   L  EA  LF EMQ EG+  + IT+ ++ 
Sbjct: 600  GAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL-VEAIDLFQEMQNEGLNPSEITFASLL 658

Query: 283  GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG-SAVRGCY 341
              C  TG +K                                 L LG++IH     RG  
Sbjct: 659  DAC--TGPYK---------------------------------LNLGRQIHCLIQKRGLL 683

Query: 342  GEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
             + + +  +L+ MY   +    A ILF +    KS I W +++SG+T   C+EE+  L++
Sbjct: 684  YDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQ 743

Query: 401  EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            EM R+   P+  T AS+L  C+ +A+L  G+  H  I    + ++ L   +++V+MYA+ 
Sbjct: 744  EMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELT-GSAVVDMYAKC 802

Query: 461  GKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  +  VF+ M S+ D +++ S+I G+   G    ALK+F+EM   +I+PD VT + V
Sbjct: 803  GDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGV 862

Query: 520  LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
            L+ACSH+G V EG++ F+ M   Y I P+L+H ACM+DL GR G L +A+E I K+ + P
Sbjct: 863  LTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEP 922

Query: 580  TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
             + +WATLLGAC+IH +   G  AAEKL+E  PENS  YVL++N+YAA+G WD++  VR 
Sbjct: 923  NAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRR 982

Query: 640  CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
             MR+ G+RK+PGC+W+  G   + F+  D  +  A EI+ LL  L  LMK+ GY+ + + 
Sbjct: 983  AMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKDLIALMKEDGYIAETDS 1042

Query: 700  CSEEE 704
              E+E
Sbjct: 1043 LLEDE 1047



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 148/539 (27%), Positives = 258/539 (47%), Gaps = 38/539 (7%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           +A    K +HA  +  G      L   +V  YA       A         R  L WN ++
Sbjct: 95  QASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVL 154

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHE 206
           S+Y R G   + +  +  +Q+  +  + FTY  VL +C  ++D+D G+ VH   I    E
Sbjct: 155 SMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFE 214

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
           ++ F   +L+ MY K G +  AR++FD +++ D VSW  MI+ Y   GL +EA ++F +M
Sbjct: 215 FNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDM 274

Query: 267 QEEGV-------------------------------EVNVITWNTIAGGCLRTGNFKGVL 295
           Q+ G+                                 NV+ WN +  G ++ G     +
Sbjct: 275 QKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAI 334

Query: 296 ELLSRMRTQETYLDSVATVIG--LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
           +    M   +T + S  + +G  L A + + AL  G  +H  A++        V ++LI 
Sbjct: 335 DFFKNM--WKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLIN 392

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY++C+ +  A  +F    E++++ WN+ML GY     A +   LF EM   G  P+  T
Sbjct: 393 MYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFT 452

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             SIL  CA +  L+ G++ H +I++   F  +L + N+LV+MYA+ G + EA+  F+ +
Sbjct: 453 YTSILSACACLECLEMGRQLHSFIIKHN-FEYNLFVENTLVDMYAKCGALEEARQQFEFI 511

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             RD V++ ++I GY  + +   A  +F  M  + I PD V++ ++LS C++   + +G+
Sbjct: 512 RNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGE 571

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            Q        G+   L   + ++D+Y + G +  A+ + + MP     +M A + G  Q
Sbjct: 572 -QVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQ 629



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/515 (25%), Positives = 246/515 (47%), Gaps = 39/515 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   ++     ++AL  G  +HA AI  GL  N  +   L+  YA       A  + +  
Sbjct: 351 TLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDAL 410

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  + WN ++  Y ++G+ ++ + ++ +M+      D FTY S+L AC  +  ++ GR
Sbjct: 411 DERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGR 470

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS  I    E++LFV N LV MY K G ++ AR+ F+ +  RD VSWN +I  Y  + 
Sbjct: 471 QLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEE 530

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EAF +F  M  +G+  + ++  +I  G                              
Sbjct: 531 DEDEAFNMFRRMILDGIAPDEVSLASILSG------------------------------ 560

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
                C+++ AL+ G+++H   V+          ++LI MY +C  +  A  +F     +
Sbjct: 561 -----CANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSR 615

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           S+++ N++++GY   D   E+  LF+EM   G+ P+ +T AS+L  C     L  G++ H
Sbjct: 616 SVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIH 674

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGYGIQGE 493
           C I +R +  +   L  SL+ MY  S +  +A  +F +    +  + +T++I+G+   G 
Sbjct: 675 CLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGC 734

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              AL+L++EM++N  +PD  T  +VL ACS    + +G +    +    G+       +
Sbjct: 735 SEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDG-RMIHSLIFHVGLDSDELTGS 793

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            +VD+Y + G +  + ++  +M        W +++
Sbjct: 794 AVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMI 828



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 244/518 (47%), Gaps = 49/518 (9%)

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFL---VENSNIRYPLPWNLLISLYVRDGFYAEA 159
           LGL  + V    ++T        ++AC L   + N+N+   + WN++IS +V+ G   EA
Sbjct: 277 LGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNV---VAWNVMISGHVKRGCDIEA 333

Query: 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSM 218
           +  +K M    ++    T  SVL A   +  +++G +VH+  I      +++V ++L++M
Sbjct: 334 IDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINM 393

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K  +++ A+++FD + ER                                   N++ W
Sbjct: 394 YAKCEKMEAAKKVFDALDER-----------------------------------NLVLW 418

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
           N + GG  + G    V++L S MR    + D       L AC+ +  L++G+++H   ++
Sbjct: 419 NAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIK 478

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             +     V N L+ MY++C  L  A   F+    +  ++WN+++ GY   +  +E+  +
Sbjct: 479 HNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNM 538

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           FR M   G+ P+ V++ASIL  CA +  L+ G++ HC++++  +    L   +SL++MY 
Sbjct: 539 FRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGL-QTCLYAGSSLIDMYV 597

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           + G +  A+ VF  M  R  V+  ++IAGY  Q +   A+ LF+EM    + P  +T  +
Sbjct: 598 KCGAIEAARYVFSCMPSRSVVSMNAIIAGYA-QNDLVEAIDLFQEMQNEGLNPSEITFAS 656

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPY 577
           +L AC+    +  G +Q   +    G+    +     ++ +Y  +     A  + ++  Y
Sbjct: 657 LLDACTGPYKLNLG-RQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQY 715

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
             ++ +W  ++     H   G  E A +   E    N+
Sbjct: 716 PKSTILWTAIISG---HTQNGCSEEALQLYQEMHRNNA 750


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 217/653 (33%), Positives = 351/653 (53%), Gaps = 41/653 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +   G+ + A   F  +R +    + V  SF  ++  C     +  G QLH   I  
Sbjct: 250 LNGYVKNGDFNSALGTFQEMRNSCVKPNSV--SFVCLLSVCATRGIVRAGIQLHGLVIRS 307

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G E +P +   ++T Y+      +A  + +       + WN LI+ YV++GF  EA+ ++
Sbjct: 308 GFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALF 367

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGK 221
           K M +  ++ D+ T+ S L +  +   + + + VHS I   H   + +++ +ALV +Y K
Sbjct: 368 KAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYI-VRHGVPFDVYLKSALVDIYFK 426

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G V++A + F +    D      MIS Y   GL  EA  LF  + +EG+  N +T  ++
Sbjct: 427 GGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASV 486

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L AC+ + +LKLGKE+H   ++   
Sbjct: 487 -----------------------------------LPACAALASLKLGKELHCDILKKGL 511

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V +++  MY++   L  AY  F+    K  + WN M+  ++     E +  LFR+
Sbjct: 512 ENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQ 571

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG + + V++++ L  CA    L +GKE HC+++R +  ++  +  ++L++MY++ G
Sbjct: 572 MGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVA-STLIDMYSKCG 630

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           K+  A+SVFD+M  ++EV++ S+IA YG  G  R  L LF EM +  I+PDHVT + ++S
Sbjct: 631 KLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMS 690

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           AC H+GLV EG   F  MT  YGI  ++EHFACMVDLYGRAG L++A + I  MP+TP +
Sbjct: 691 ACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDA 750

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
             W +LLGAC++H N  + + A++ L+E  P NSGYYVL++N++A  G W+ + KVR+ M
Sbjct: 751 GTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLM 810

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           ++ GV+KIPG +W+D       F   D  + Q+ EIY +L  L   ++  GYV
Sbjct: 811 KEKGVQKIPGYSWIDVNGGTHMFSAADGCHPQSVEIYLILKNLLLELRKHGYV 863



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/555 (25%), Positives = 263/555 (47%), Gaps = 47/555 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ F+  G    A   F R+  +  + D    +F ++I  CG +  +   K +H  A ++
Sbjct: 149 IRGFSMLGCFDFALMFFFRMLGSNVAPDKY--TFPYVIKACGGLNNVPLCKMVHELARSM 206

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   +  +   L+  Y      ++A +L +   +R  + WN++++ YV++G +  AL  +
Sbjct: 207 GFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTF 266

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           ++M++  ++ ++ ++  +L  C     V  G  +H   I +  E    V N +++MY K 
Sbjct: 267 QEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKC 326

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +  AR++FD M + D V+WN +I+ Y   G   EA  LF  M   GV+++ IT+ +  
Sbjct: 327 GNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFL 386

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
              L++                                   G+LK  KE+H   VR    
Sbjct: 387 PSVLKS-----------------------------------GSLKYCKEVHSYIVRHGVP 411

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               +++AL+ +Y +  D+  A   F+      +    +M+SGY       E+  LFR +
Sbjct: 412 FDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWL 471

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            + G+ PN +T+AS+LP CA +A+L+ GKE HC IL++ + N    + +S+  MYA+SG+
Sbjct: 472 IQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENV-CQVGSSITYMYAKSGR 530

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A   F  M  +D V +  +I  +   G+  +A+ LF +M  +  K D V++ A LSA
Sbjct: 531 LDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSA 590

Query: 523 CSHSGLVVEGQKQ---FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           C++   +  G++      R + I   F      + ++D+Y + G L  A+ +   M +  
Sbjct: 591 CANYPALYYGKELHCFVVRNSFISDTFVA----STLIDMYSKCGKLALARSVFDMMDWK- 645

Query: 580 TSAMWATLLGACQIH 594
               W +++ A   H
Sbjct: 646 NEVSWNSIIAAYGNH 660



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/498 (26%), Positives = 232/498 (46%), Gaps = 39/498 (7%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           Q +Q+HA  +  G+  +  L  +++  Y     + +   L     + Y LPWN LI  + 
Sbjct: 94  QVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFS 153

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLF 210
             G +  AL  + +M    +  D +T+P V+KACG + +V   ++VH    +      LF
Sbjct: 154 MLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLF 213

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + ++L+ +Y   G +  A+ LFD++  RD                               
Sbjct: 214 IGSSLIKLYTDNGYIHDAKYLFDELPVRDC------------------------------ 243

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
                I WN +  G ++ G+F   L     MR      +SV+ V  L  C+  G ++ G 
Sbjct: 244 -----ILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGI 298

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           ++HG  +R  +     V N +ITMYS+C +L  A  +F +  +   +TWN +++GY    
Sbjct: 299 QLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNG 358

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             +E+  LF+ M  SGV+ + +T AS LP   +  +L++ KE H YI+R  +  + + L 
Sbjct: 359 FTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFD-VYLK 417

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           ++LV++Y + G V  A   F   +  D    T++I+GY + G    AL LF  + +  + 
Sbjct: 418 SALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMV 477

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           P+ +TM +VL AC+    +  G K+        G+    +  + +  +Y ++G L+ A +
Sbjct: 478 PNCLTMASVLPACAALASLKLG-KELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQ 536

Query: 571 IITKMPYTPTSAMWATLL 588
              +MP    S  W  ++
Sbjct: 537 FFRRMP-VKDSVCWNLMI 553



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 3/240 (1%)

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           ++ MY  C+  +    LF        + WN ++ G++ L C + +   F  M  S V P+
Sbjct: 117 MLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPD 176

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             T   ++  C  + N+   K  H  + R   F+  L + +SL+++Y  +G + +AK +F
Sbjct: 177 KYTFPYVIKACGGLNNVPLCKMVH-ELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLF 235

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           D +  RD + +  ++ GY   G+   AL  F+EM  + +KP+ V+ V +LS C+  G+V 
Sbjct: 236 DELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVR 295

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G  Q   +    G          ++ +Y + G L  A++I   MP T T   W  L+  
Sbjct: 296 AG-IQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDT-VTWNGLIAG 353


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 221/680 (32%), Positives = 357/680 (52%), Gaps = 53/680 (7%)

Query: 74  LDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--- 128
           LDS  FA ++  C + K+    +++HA  I         +  +LV  Y     + +A   
Sbjct: 17  LDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKV 76

Query: 129 --------CF--------------LVENSNIRYPLP------WNLLISLYVRDGFYAEAL 160
                    F              L E  N+   +P      WN ++S + +   + EAL
Sbjct: 77  FDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEAL 136

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMY 219
             +  M S     + +++ S L AC  + D++ G  +H+ I    +   +++ +ALV MY
Sbjct: 137 RFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMY 196

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G V  A+R FD M  R+ VSWN++I+ Y   G   +A ++FV M + GVE + IT  
Sbjct: 197 SKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLA 256

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSV----ATVIGLGACSHVGALKLGKEIHGS 335
           ++   C      +  L++ +R+  ++ Y + +    A V     C  V   +L       
Sbjct: 257 SVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARL--VFDRM 314

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
            +R    E      +++  Y+R   ++ A ++F    EK++++WN++++GYT     EE+
Sbjct: 315 PLRNVVSE-----TSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEA 369

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF-----NEHLLLW 450
             LF  + R  + P + T  ++L  CA +A+L+ G++ H  IL+   +        + + 
Sbjct: 370 VRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVG 429

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           NSL++MY + G V +   VF+ M  RD V++ ++I GY   G G  AL++F +M  +  K
Sbjct: 430 NSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQK 489

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PDHVTM+ VLSACSH+GLV EG++ F  M +  G+ P  +HF CMVDL GRAG L++A +
Sbjct: 490 PDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEAND 549

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
           +I  MP  P + +W +LL AC++H N  +G++ AEKL+E  P NSG YVL++NMYA  G 
Sbjct: 550 LIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGR 609

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           W  + +VR  MR  GV K PGC+W++  +    F+V D  +   ++I+ +L  LTE MK 
Sbjct: 610 WKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKW 669

Query: 691 AGYVVK---EEFCSEEEIVE 707
           AGYV +   +E C EE   E
Sbjct: 670 AGYVPEADDDEICEEESDSE 689



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 219/464 (47%), Gaps = 25/464 (5%)

Query: 57  FEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           FE   R  +   S D VL+  SF   +  C  +  L  G Q+HA         +  +   
Sbjct: 132 FEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSA 191

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV  Y+   +   A    +   +R  + WN LI+ Y ++G   +AL V+  M    +  D
Sbjct: 192 LVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPD 251

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLF 232
             T  SV+ AC     +  G  +H+ +    ++   L + NALV MY K  +V+ AR +F
Sbjct: 252 EITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVF 311

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D+M  R+ VS  +M+  YA     K A  +F  M E+    NV++WN +  G  + G  +
Sbjct: 312 DRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEK----NVVSWNALIAGYTQNGENE 367

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY----GEYEN-- 346
             + L   ++ +  +         L AC+++  LKLG++ H   ++  +    GE  +  
Sbjct: 368 EAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIF 427

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V N+LI MY +C  +    ++F+   E+ +++WN+M+ GY        +  +FR+M  SG
Sbjct: 428 VGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSG 487

Query: 407 VEPNYVTIASILPLCARVANLQHGKE-FHCYI--LRRAMFNEHLLLWNSLVEMYARSGKV 463
            +P++VT+  +L  C+    ++ G+  FH     L  A   +H   +  +V++  R+G +
Sbjct: 488 QKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDH---FTCMVDLLGRAGCL 544

Query: 464 PEAKSVFDLMSRR-DEVTYTSLIAGYGIQGE---GR-VALKLFE 502
            EA  +   M  + D V + SL+A   + G    G+ VA KL E
Sbjct: 545 DEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLME 588


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 216/652 (33%), Positives = 347/652 (53%), Gaps = 39/652 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +   G+   A + F  +R +    + V  +FA ++  C     L  G QLH  A++ 
Sbjct: 131 LNGYVKNGDSGNAIKIFLEMRHSEIKPNSV--TFACVLSVCASEAMLDLGTQLHGIAVSC 188

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE +  +   L+  Y+       A  L + S     + WN +IS YV++G   EA  ++
Sbjct: 189 GLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLF 248

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           + M S  I+ D+ T+ S L    E++ +   + +H   I       +F+ +AL+ +Y K 
Sbjct: 249 RGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKC 308

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V++A+++  +    D V   TMIS Y   G  KEA + F  + +E ++   +T+++I 
Sbjct: 309 RDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSI- 367

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                               A + + AL LGKE+HGS ++    
Sbjct: 368 ----------------------------------FPAFAGLAALNLGKELHGSIIKTKLD 393

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
           E  +V +A++ MY++C  L  A  +F    EK  I WNSM++  +      E+  LFR+M
Sbjct: 394 EKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQM 453

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              G   + V+I+  L  CA +  L +GKE H  +++  + ++ L   +SL++MYA+ G 
Sbjct: 454 GMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSD-LYAESSLIDMYAKCGN 512

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  ++ VFD M  R+EV++ S+I+ YG  G+ +  L LF EM +N I+PDHVT + ++SA
Sbjct: 513 LNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISA 572

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C H+G V EG + +  MT  YGI  ++EH+AC+ D++GRAG L++A E I  MP+ P + 
Sbjct: 573 CGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAG 632

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W TLLGAC IH N  + E A++ L +  P NSGYYVL+AN+ A  G W K+ KVR+ M+
Sbjct: 633 VWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMK 692

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           + GVRK+PG +W++  N    F+  D S+    +IY +L  L   +K  GYV
Sbjct: 693 ERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYV 744



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 230/460 (50%), Gaps = 45/460 (9%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN +I  +   G +  AL  Y +M    +  D +T+P V+KAC  +  V  G++VH  ++
Sbjct: 26  WNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVN 85

Query: 203 ACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               +  +FV ++L+ +Y + G +  A+ LFD + ++D+V WN M++ Y   G    A +
Sbjct: 86  LMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIK 145

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F+EM+   ++ N +T+  +                                   L  C+
Sbjct: 146 IFLEMRHSEIKPNSVTFACV-----------------------------------LSVCA 170

Query: 322 HVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
               L LG ++HG AV  C  E ++ V N L+ MYS+C+ L+ A  LF  + +  +++WN
Sbjct: 171 SEAMLDLGTQLHGIAV-SCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWN 229

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
            ++SGY       E+  LFR M  +G++P+ +T AS LP    + +L+H KE H YI+R 
Sbjct: 230 GIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRH 289

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
           A+  + + L ++L+++Y +   V  A+ +    S  D V  T++I+GY + G+ + AL+ 
Sbjct: 290 AVVLD-VFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEA 348

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-ACMVDLY 559
           F  + + ++KP  VT  ++  A   +GL      +    + I     +  H  + ++D+Y
Sbjct: 349 FRWLVQERMKPTSVTFSSIFPA--FAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMY 406

Query: 560 GRAGLLNKAKEIITKMPYTPTSAM-WATLLGACQIHRNTG 598
            + G L+ A  +  ++  T   A+ W +++ +C  +   G
Sbjct: 407 AKCGRLDLACRVFNRI--TEKDAICWNSMITSCSQNGRPG 444



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 134/533 (25%), Positives = 254/533 (47%), Gaps = 40/533 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ F   G  + A   + ++     S D    +F +++  C  +K++  GK +H     +
Sbjct: 30  IRGFTMMGQFNYALLFYLKMLGAGVSPDKY--TFPYVVKACCGLKSVKMGKIVHETVNLM 87

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL+++  +   L+  YA     ++A +L +N   +  + WN++++ YV++G    A+ ++
Sbjct: 88  GLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIF 147

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
            +M+   I+ ++ T+  VL  C     +D G  +H    +C  E    V N L++MY K 
Sbjct: 148 LEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKC 207

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             +  AR+LFD   + D VSWN +IS Y   GL  EA  LF  M   G++ + IT+    
Sbjct: 208 QCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITF---- 263

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                  ++L  V  ++ L  C         KEIHG  +R    
Sbjct: 264 ----------------------ASFLPCVNELLSLKHC---------KEIHGYIIRHAVV 292

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               +++ALI +Y +C+D+  A  +   ++    +   +M+SGY      +E+   FR +
Sbjct: 293 LDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWL 352

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            +  ++P  VT +SI P  A +A L  GKE H  I++  + +E   + +++++MYA+ G+
Sbjct: 353 VQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKL-DEKCHVGSAILDMYAKCGR 411

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  VF+ ++ +D + + S+I      G    A+ LF +M     + D V++   LSA
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           C++   +  G K+   +     +   L   + ++D+Y + G LN ++ +  +M
Sbjct: 472 CANLPALHYG-KEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRM 523



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 2/225 (0%)

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY R   L+ A  LF          WN M+ G+T +     +   + +M  +GV P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
              ++  C  + +++ GK  H   +      E + + +SL+++YA +G + +A+ +FD +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVH-ETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            ++D V +  ++ GY   G+   A+K+F EM  ++IKP+ VT   VLS C+   ++  G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
            Q   +    G+         ++ +Y +   L  A+++    P +
Sbjct: 180 -QLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQS 223


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/611 (33%), Positives = 340/611 (55%), Gaps = 40/611 (6%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           AQ +Q+HA  + LGL+ +  L+ KL+   +S+     A  + ++       PWN +I  Y
Sbjct: 35  AQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGY 94

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSL 209
            R+  + +AL +Y +MQ  R+  D+FT+P +LKACG +  +  GR VH+ +     E  +
Sbjct: 95  SRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADV 154

Query: 210 FVHNALVSMYGKFGQVDVARRLFD--KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           FV N L+++Y K  ++  AR +F+   + ER  VSW  ++SAYA  G             
Sbjct: 155 FVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNG------------- 201

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
            E VE                      LE+ S+MR  +   D VA V  L A + +  L+
Sbjct: 202 -EPVEA---------------------LEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLE 239

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G+ IH S ++       ++  +L TMY++C  +  A ILF      ++I WN+M+SGY 
Sbjct: 240 QGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
               A+++  LF EM    V P+ ++I S +  CA+V +L+  +    Y+  R+ + + +
Sbjct: 300 KNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYV-SRSDYRDDV 358

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + ++L++M+A+ G V  A+SVFD    RD V ++++I GYG+ G+ R A+ L+  M ++
Sbjct: 359 FISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERD 418

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            + P+ VT + +L AC+HSG+V EG   F RM   + I PQ +H+AC++DL GRAG L++
Sbjct: 419 GVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQ 477

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A E+I  MP  P   +W  LL AC+ HR+  +G++AA++L    P N+G+YV ++N+YAA
Sbjct: 478 AYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAA 537

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
              WD++A+VR  M++ G+ K  GC+WV+       F V D S+ + +EI   +  +   
Sbjct: 538 ARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESR 597

Query: 688 MKDAGYVVKEE 698
           +K+ G+V  ++
Sbjct: 598 LKEGGFVANKD 608



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 129/541 (23%), Positives = 226/541 (41%), Gaps = 89/541 (16%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ ++   +   A   ++++++   S D    +F H++  CG +  L  G+ +HA    L
Sbjct: 91  IRGYSRNNHFQDALLMYSKMQLARVSPDSF--TFPHLLKACGGLSHLQMGRFVHAQVFRL 148

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYA 157
           G E +  +   L+  YA       A  + E      PLP      W  ++S Y ++G   
Sbjct: 149 GFEADVFVQNGLIALYAKCRRLGCARTVFEG----LPLPERTIVSWTAIVSAYAQNGEPV 204

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC---HEWSLFVHNA 214
           EAL ++ QM+   ++ D     SVL A   + D++ GR +H+ +       E  L +  +
Sbjct: 205 EALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLI--S 262

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L +MY K GQV  A+ LFDKM   + + WN MIS YA  G  K+A  LF EM  + V  +
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPD 322

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
            I+  +                                    + AC+ VG+L+  + +  
Sbjct: 323 TISITS-----------------------------------AISACAQVGSLEQARWMDE 347

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
              R  Y +   + +ALI M+++C  +  A  +F  T ++ ++ W++M+ GY     A E
Sbjct: 348 YVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQARE 407

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  L+R M R GV PN VT   +L  C     ++ G  F   +    + N     +  ++
Sbjct: 408 AISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKI-NPQQQHYACII 466

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           ++  R+G + +A  V   M                                   ++P   
Sbjct: 467 DLLGRAGHLDQAYEVIKCMP----------------------------------VQPGVT 492

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
              A+LSAC     V  G+   +++ SI        H+  + +LY  A L ++  E+  +
Sbjct: 493 VWGALLSACKKHRHVELGKYAAQQLFSIDP--SNTGHYVQLSNLYAAARLWDRVAEVRVR 550

Query: 575 M 575
           M
Sbjct: 551 M 551


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/641 (31%), Positives = 332/641 (51%), Gaps = 39/641 (6%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA E F R+++     D   ++ A ++  C     L  G+QLHA    LG   N  +   
Sbjct: 355 KAMELFKRMQLDGLEPDS--NTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGA 412

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  YA  S    A      + +   + WN+++  Y        +  +++QMQ   I  +
Sbjct: 413 LLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 472

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
            +TYPS+LK C  + D++ G  +HS  I    + + +V + L+ MY K G++D A     
Sbjct: 473 QYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTA----- 527

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
                    W+ +I  +A K                    +V++W T+  G  +      
Sbjct: 528 ---------WDILIR-FAGK--------------------DVVSWTTMIAGYTQYNFDDK 557

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
            L    +M  +    D V     + AC+ + ALK G++IH  A    +      +NAL+T
Sbjct: 558 ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVT 617

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           +YS+C ++  AY+ F+ T     I WN+++SG+      EE+  +F  M R G++ N  T
Sbjct: 618 LYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFT 677

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S +   +  AN++ GK+ H  I +   ++    + N+++ MYA+ G + +AK  F  +
Sbjct: 678 FGSAVKAASETANMKQGKQVHAVITKTG-YDSETEVCNAIISMYAKCGSISDAKKQFLEL 736

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           S ++EV++ ++I  Y   G G  AL  F++M  + ++P+HVT+V VLSACSH GLV +G 
Sbjct: 737 SMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI 796

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           + FE M + YG+ P+ EH+ C+VD+  RAGLL++AK+ I +MP  P + +W TLL AC +
Sbjct: 797 EYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVV 856

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           H+N  IGE+AA  LLE  PE+S  YVL++N+YA    WD     R  M++ GV+K PG +
Sbjct: 857 HKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQS 916

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           W++  N    F V D ++  A EI+     LT+   + GYV
Sbjct: 917 WIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYV 957



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/520 (22%), Positives = 239/520 (45%), Gaps = 39/520 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ ++  C K+++L  G+QLH   + LG   +  +   LV+ Y       +A  +  N 
Sbjct: 273 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNM 332

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  + +N LI+   + G+  +A+ ++K+MQ   +  D+ T  S++ AC     +  G+
Sbjct: 333 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQ 392

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+        S   +  AL+++Y K   ++ A   F +    + V WN M+ AY    
Sbjct: 393 QLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLD 452

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             + +F++F +MQ E +  N  T+ +I   C+R G+                        
Sbjct: 453 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD------------------------ 488

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
                      L+LG++IH   ++  +     V + LI MY++   L  A+ +    A K
Sbjct: 489 -----------LELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 537

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +++W +M++GYT  +  +++   FR+M   G+  + V + + +  CA +  L+ G++ H
Sbjct: 538 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 597

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
                   F+  L   N+LV +Y++ G + EA   F+     D + + +L++G+   G  
Sbjct: 598 AQACVSG-FSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNN 656

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL++F  MN+  I  ++ T  + + A S +  + +G KQ   + +  G   + E    
Sbjct: 657 EEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQG-KQVHAVITKTGYDSETEVCNA 715

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           ++ +Y + G ++ AK+   ++        W  ++ A   H
Sbjct: 716 IISMYAKCGSISDAKKQFLELS-MKNEVSWNAMINAYSKH 754



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/529 (25%), Positives = 236/529 (44%), Gaps = 45/529 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCC-GKVKALAQGKQLHACA 100
           +K+ A R    K F  F R+     + +V  +  +F+ ++  C G   A    +Q+HA  
Sbjct: 141 IKELASRSLSGKVFCLFGRM----VNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARI 196

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           I  GL K+ ++   L+  Y+     + A  + +   ++    W  +IS   ++    EA+
Sbjct: 197 IYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAI 256

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMY 219
            ++  M    I    + + SVL AC ++  ++ G  +H  +         +V NALVS+Y
Sbjct: 257 RLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLY 316

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
              G +  A  +F  M +RDAV                                   T+N
Sbjct: 317 FHLGSLISAEHIFSNMSQRDAV-----------------------------------TYN 341

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           T+  G  + G  +  +EL  RM+      DS      + ACS  G L  G+++H    + 
Sbjct: 342 TLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKL 401

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +   + +  AL+ +Y++C D+  A   F  T  ++++ WN ML  Y  LD    S  +F
Sbjct: 402 GFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF 461

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R+M    + PN  T  SIL  C R+ +L+ G++ H  I++ + F  +  + + L++MYA+
Sbjct: 462 RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTS-FQLNAYVCSVLIDMYAK 520

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            GK+  A  +    + +D V++T++IAGY        AL  F +M    I+ D V +   
Sbjct: 521 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 580

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           +SAC+    + EGQ Q      + G    L     +V LY + G + +A
Sbjct: 581 VSACAGLQALKEGQ-QIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEA 628



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/512 (23%), Positives = 230/512 (44%), Gaps = 44/512 (8%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           C     +L +G++LH+  + LG + N  L  KL+ FY      + A  + +    R    
Sbjct: 77  CLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFT 136

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC-GEMMDVDFGRVVHS-C 200
           WN +I          +  C++ +M +  +  +  T+  VL+AC G  +  D    +H+  
Sbjct: 137 WNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARI 196

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           I      S  V N L+ +Y + G VD ARR+FD +  +D  SW  MIS  +      EA 
Sbjct: 197 IYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAI 256

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
           +LF +M   G+      ++++                                   L AC
Sbjct: 257 RLFCDMYVLGIMPTPYAFSSV-----------------------------------LSAC 281

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
             + +L++G+++HG  ++  +     V NAL+++Y     L  A  +F   +++  +T+N
Sbjct: 282 KKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYN 341

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           ++++G +     E++  LF+ M   G+EP+  T+AS++  C+    L  G++ H Y  + 
Sbjct: 342 TLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKL 401

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
             F  +  +  +L+ +YA+   +  A + F      + V +  ++  YG+  + R + ++
Sbjct: 402 G-FASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 460

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC--MVDL 558
           F +M   +I P+  T  ++L  C   G +  G+   +  + I     QL  + C  ++D+
Sbjct: 461 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE---QIHSQIIKTSFQLNAYVCSVLIDM 517

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           Y + G L+ A +I+ +       + W T++  
Sbjct: 518 YAKLGKLDTAWDILIRFAGKDVVS-WTTMIAG 548



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 187/407 (45%), Gaps = 52/407 (12%)

Query: 171 IRGDNFTYPSVLKACGEMM-DVDFGRVVHSCI-------DACHEWSLFVHNALVSMYGKF 222
           IR ++ T   +L+ C +    +D GR +HS I       +AC      +   L+  Y   
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNAC------LSEKLLDFYLFK 116

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +D A ++FD+M ER   +WN MI   AS+ L  + F LF  M  E V  N        
Sbjct: 117 GDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPN-------- 168

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG-ALKLGKEIHGSAVRGCY 341
                 G F GVLE                      AC     A  + ++IH   +    
Sbjct: 169 -----EGTFSGVLE----------------------ACRGGSVAFDVVEQIHARIIYQGL 201

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
           G+   V N LI +YSR   +  A  +F     K   +W +M+SG +  +C  E+  LF +
Sbjct: 202 GKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCD 261

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M+  G+ P     +S+L  C ++ +L+ G++ H  +L+   F+    + N+LV +Y   G
Sbjct: 262 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG-FSSDTYVCNALVSLYFHLG 320

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            +  A+ +F  MS+RD VTY +LI G    G G  A++LF+ M  + ++PD  T+ +++ 
Sbjct: 321 SLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVV 380

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           ACS  G +  GQ Q    T+  G     +    +++LY +   +  A
Sbjct: 381 ACSSDGTLFSGQ-QLHAYTTKLGFASNDKIEGALLNLYAKCSDIETA 426



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 3/186 (1%)

Query: 406 GVEPNYVTIASILPLCARV-ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           G+ PN+ T+  +L  C +   +L  G++ H  IL+   F+ +  L   L++ Y   G + 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLG-FDNNACLSEKLLDFYLFKGDLD 120

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A  VFD M  R   T+  +I     +        LF  M    + P+  T   VL AC 
Sbjct: 121 GALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACR 180

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
              +  +  +Q        G+         ++DLY R G +++A+ +   + Y    + W
Sbjct: 181 GGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGL-YLKDHSSW 239

Query: 585 ATLLGA 590
             ++  
Sbjct: 240 VAMISG 245


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 205/590 (34%), Positives = 328/590 (55%), Gaps = 14/590 (2%)

Query: 113 PKLVTFYASFSLYNNACFLVENSNI------RYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           P L T+ A  S   +A  L +   +      R  + +N +I+ +   G +A+A+ VY  +
Sbjct: 70  PNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLAL 129

Query: 167 --QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFG 223
                 +R    T  +++ A   + D   G+  H   +      + FV + LV MY K  
Sbjct: 130 LQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMS 189

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            V  A+R FD++  ++ V +NTMI+      + +EA +LF  M +     + ITW T+  
Sbjct: 190 LVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDR----DSITWTTMVT 245

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G  + G     LE+  RMR Q   +D       L AC  + AL+ GK+IH   +R  Y +
Sbjct: 246 GFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDD 305

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V +AL+ MYS+C+ ++ A  +F+    K+II+W +++ GY    C+EE+  +F EM 
Sbjct: 306 NVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQ 365

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           R G++P+  T+ S++  CA +A+L+ G +FHC  L   + + ++ + N+LV +Y + G +
Sbjct: 366 RDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMH-YITVSNALVTLYGKCGSI 424

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A  +FD MS  D+V++T+L++GY   G  +  + LFE+M    +KPD VT + VLSAC
Sbjct: 425 EDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSAC 484

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           S +G V +G+  F  M   +GI P  +H+ CM+DLY R+G L +A+E I +MP  P +  
Sbjct: 485 SRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIG 544

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W TLL AC++  +  IG+WAAE LLE  P+N   YVL+ +M+AA G W+++A++R  MRD
Sbjct: 545 WGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRD 604

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
             V+K PGC+W+   N    F  DD S+  ++ IY  L  L   M + GY
Sbjct: 605 RQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGY 654



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 226/486 (46%), Gaps = 80/486 (16%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F+G G+ ++A   +  +    +S      + + ++     +   A GKQ H   + LG  
Sbjct: 113 FSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFG 172

Query: 107 KNPVLVPKLVTFYASFSLYNNA------------------------CFLVENS------- 135
            N  +   LV  YA  SL  +A                        C +VE +       
Sbjct: 173 ANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVM 232

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +++ + ++G  +EAL ++++M+ + I  D +T+ S+L ACG +  ++ G+
Sbjct: 233 TDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGK 292

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+  I   ++ ++FV +ALV MY K   + +A  +F +M  ++ +SW  +I  Y   G
Sbjct: 293 QIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNG 352

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA ++F EMQ +G++ +  T  ++                                 
Sbjct: 353 CSEEAVRVFSEMQRDGIDPDDYTLGSV--------------------------------- 379

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + +C+++ +L+ G + H  A+      Y  V NAL+T+Y +C  +  A+ LF   +  
Sbjct: 380 --ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFH 437

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE-F 433
             ++W +++SGY     A+E+  LF +M   GV+P+ VT   +L  C+R   ++ G+  F
Sbjct: 438 DQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYF 497

Query: 434 HCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAG 487
           H      +M  +H ++     +  ++++Y+RSGK+ EA+     M    D + + +L++ 
Sbjct: 498 H------SMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSA 551

Query: 488 YGIQGE 493
             ++G+
Sbjct: 552 CRLRGD 557



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 208/424 (49%), Gaps = 39/424 (9%)

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           H    ++ N L++ YGK G+   ARR+FD M   +  ++N ++S  A   L  +   LF 
Sbjct: 37  HPPPTYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFA 96

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNF-KGVLELLSRMRTQETYLDSVATVIGL-GACSH 322
            M +     +++++N +  G    G+  + V   L+ ++   +   S  T+  +  A S 
Sbjct: 97  SMTQR----DIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASA 152

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYS-------------------------- 356
           +G   LGK+ H   +R  +G    V + L+ MY+                          
Sbjct: 153 LGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTM 212

Query: 357 -----RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
                RCK +  A  LF++  ++  ITW +M++G+T      E+  +FR M   G+  + 
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQ 272

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            T  SIL  C  ++ L+ GK+ H YI+ R  +++++ + ++LV+MY++   +  A++VF 
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYII-RTRYDDNVFVGSALVDMYSKCRSIKLAETVFR 331

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            M+ ++ +++T+LI GYG  G    A+++F EM ++ I PD  T+ +V+S+C++   + E
Sbjct: 332 RMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEE 391

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G  QF  +  + G+   +     +V LYG+ G +  A  +  +M +    +  A + G  
Sbjct: 392 G-AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYA 450

Query: 592 QIHR 595
           Q  R
Sbjct: 451 QFGR 454


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 200/611 (32%), Positives = 341/611 (55%), Gaps = 50/611 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  +  +  GK +H   I  G   + V++   V  YA  +++ +A  L +  
Sbjct: 300 TYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEM 359

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN +IS Y +DG   +AL ++++M+    + D+ T  +V+ +C  ++D++ G+
Sbjct: 360 PERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGK 419

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   + +      FV +ALV MYGK G +++A+ +F+++  +                
Sbjct: 420 EIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRK---------------- 463

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM-----RTQETYLD 309
                              NV++WN++  G    G+ K  +EL  RM     R   T L 
Sbjct: 464 -------------------NVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLS 504

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           S+     L ACS    L+LGK IHG  +R        V ++LI +Y +C ++  A  +F+
Sbjct: 505 SI-----LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQ 559

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
              + ++++WN M+SGY  +    E+  +F +M ++GV+P+ +T  S+LP C+++A L+ 
Sbjct: 560 NMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEK 619

Query: 430 GKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
           GKE H +I+   +  NE  ++  +L++MYA+ G V EA  +F+ +  RD V++TS+IA Y
Sbjct: 620 GKEIHNFIIESKLEINE--VVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAY 677

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           G  G+   ALKLFE+M ++  KPD VT +A+LSACSH+GLV EG   F +M + YG  P 
Sbjct: 678 GSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPA 737

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
           +EH++C++DL GR G L +A EI+ + P       + +TL  AC +H+   +GE     L
Sbjct: 738 VEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLL 797

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
           +E  P++   Y++++NMYA+   WD++ KVR  +++LG++K PGC+W++ G    PF+V+
Sbjct: 798 IEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVE 857

Query: 668 DTSNVQAQEIY 678
           D S+ QA  IY
Sbjct: 858 DKSHPQADMIY 868



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 144/510 (28%), Positives = 250/510 (49%), Gaps = 51/510 (10%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP---WNLLISL 149
           GK +H   ++LGL+ N  L   L+  Y S  L+ +A  + +   I  PL    WN L++ 
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQT--IENPLDITLWNGLMAA 271

Query: 150 YVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS 208
             ++  + E L V+ ++     ++ D FTYPSVLKAC  +  V +G++VH+         
Sbjct: 272 CTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHT--------- 322

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
                                 +       D V  ++ +  YA   ++++A +LF EM E
Sbjct: 323 ---------------------HVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPE 361

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                +V +WN +     + G  +  LEL   M+      DSV     + +C+ +  L+ 
Sbjct: 362 R----DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLER 417

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GKEIH   VR  +     V +AL+ MY +C  L  A  +F+    K++++WNSM++GY+ 
Sbjct: 418 GKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSL 477

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
              ++    LFR M   G+ P   T++SIL  C+R  NLQ GK  H YI+R  +    + 
Sbjct: 478 KGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRV-EADIF 536

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           + +SL+++Y + G +  A++VF  M + + V++  +I+GY   G    AL +F +M K  
Sbjct: 537 VNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG 596

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE----HFACMVDLYGRAGL 564
           +KPD +T  +VL ACS   ++ +G++        + I  +LE        ++D+Y + G 
Sbjct: 597 VKPDAITFTSVLPACSQLAVLEKGKEIHN-----FIIESKLEINEVVMGALLDMYAKCGA 651

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           +++A  I  ++P     + W +++ A   H
Sbjct: 652 VDEALHIFNQLPERDFVS-WTSMIAAYGSH 680



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 132/266 (49%), Gaps = 16/266 (6%)

Query: 33  EHIMRINLLETLKDFAG---RGNLSKAFEAFTR-----IRITAASHDVVLDSFAHIIFCC 84
           E I R N++      AG   +G+     E F R     IR T       L + + I+  C
Sbjct: 458 EQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPT-------LTTLSSILMAC 510

Query: 85  GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWN 144
            +   L  GK +H   I   +E +  +   L+  Y       +A  + +N      + WN
Sbjct: 511 SRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWN 570

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
           ++IS YV+ G Y EAL ++  M+   ++ D  T+ SVL AC ++  ++ G+ +H+  I++
Sbjct: 571 VMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES 630

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             E +  V  AL+ MY K G VD A  +F+++ ERD VSW +MI+AY S G   EA +LF
Sbjct: 631 KLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLF 690

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTG 289
            +MQ+   + + +T+  I   C   G
Sbjct: 691 EKMQQSDAKPDKVTFLAILSACSHAG 716



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 9/240 (3%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  +A   FT +R      D +  +F  ++  C ++  L +GK++H   I   LE N V
Sbjct: 580 GSYLEALVIFTDMRKAGVKPDAI--TFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 637

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           ++  L+  YA     + A  +      R  + W  +I+ Y   G   EAL ++++MQ   
Sbjct: 638 VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSD 697

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVA 228
            + D  T+ ++L AC     VD G    + + A + +   V  ++ L+ + G+ G++  A
Sbjct: 698 AKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREA 757

Query: 229 RRLFDKM--LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
             +  +   +  D    +T+ SA   +    L ++  +L +E   +     +I  N  A 
Sbjct: 758 YEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYAS 817


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 207/631 (32%), Positives = 344/631 (54%), Gaps = 40/631 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  V  +A+GK++HA  I  G E +  +   L+T Y      +NA  L +  
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +IS Y  +G   E L ++  M+   +  D  T  +V  AC  + +   GR
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   + +     + ++N+L+ MY   G+++ A  +F +M  +D VSW  MI++  S  
Sbjct: 320 GVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK 379

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L  +A + +  M+ EG+  + IT  ++                                 
Sbjct: 380 LPFKAVETYKMMELEGILPDEITLVSV--------------------------------- 406

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +G L LG  +H  A++     +  V N+LI MYS+CK + +A  +F+  + K
Sbjct: 407 --LSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGK 464

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++++W S++ G    + + E+   FR+M +  ++PN VT+ S+L  CAR+  L  GKE H
Sbjct: 465 NVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIH 523

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            + LR  +  +  L  N++++MY R G+   A + F+   ++D   +  L+ GY  QG+ 
Sbjct: 524 AHALRTGVGFDGFLP-NAILDMYVRCGRKVPALNQFN-SQKKDVTAWNILLTGYAQQGQA 581

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           ++A++LF++M + +I PD +T +++L ACS SG+V EG + F  M + Y + P L+H+AC
Sbjct: 582 KLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYAC 641

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           +VD+ GRAG L+ A + I  MP  P +A+W  LL AC+IHRN  +GE AA+++ E   ++
Sbjct: 642 VVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKS 701

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
            GYY+L+ N+YA  G WDK++KVR+ MR+ G+   PGC+WV+       FL  D S+ Q+
Sbjct: 702 VGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQS 761

Query: 675 QEIYPLLGGLTELMKDAGY-VVKEEFCSEEE 704
           +EI  +L G    MK+ G+  +K  F SE E
Sbjct: 762 KEINGVLDGFCSKMKENGFGNLKSSFTSEIE 792



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 151/528 (28%), Positives = 256/528 (48%), Gaps = 55/528 (10%)

Query: 44  LKDFAGRGNLSKA---FEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACA 100
           L++   +GNL +A    E+   +RI     +V  D++  ++  C   +A  +G +++   
Sbjct: 69  LRELCLQGNLEQAMKRLESMLELRI-----EVEEDAYIALLRLCEWRRAPDEGSRVYELV 123

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
            +        L   L++ +  F    +A ++    + R    WN+L+  Y + G + EAL
Sbjct: 124 SSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEAL 183

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMY 219
            +Y +M    IR + +T+PSVLK C  + D+  G+ +H+  I    E  + V NAL++MY
Sbjct: 184 NLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMY 243

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G +  AR LFDKM +RD +SWN MIS Y   G   E  +LF  M+E  V+ ++IT  
Sbjct: 244 VKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMT 303

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           T+A  C          ELL   R                         LG+ +HG  V+ 
Sbjct: 304 TVASAC----------ELLDNER-------------------------LGRGVHGYVVKS 328

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +G   ++ N+LI MYS    L  A  +F     K +++W +M++         ++   +
Sbjct: 329 EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY 388

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           + M   G+ P+ +T+ S+L  CA + +L  G   H   ++  + + H+++ NSL++MY++
Sbjct: 389 KMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVS-HVIVSNSLIDMYSK 447

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
              V  A  VF  +S ++ V++TSLI G  I      AL  F +M K  +KP+ VT+++V
Sbjct: 448 CKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISV 506

Query: 520 LSACSHSGLVVEGQK----QFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           LSAC+  G ++ G++             G  P       ++D+Y R G
Sbjct: 507 LSACARIGALMRGKEIHAHALRTGVGFDGFLPN-----AILDMYVRCG 549



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 207/445 (46%), Gaps = 39/445 (8%)

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE-WSLFVH 212
           G   +A+   + M   RI  +   Y ++L+ C      D G  V+  + +      + + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           NAL+SM+ +FG +  A  +F KM ERD                                 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERD--------------------------------- 162

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
             V +WN + GG  + G F   L L  RM   E   +       L  C+ V  +  GKEI
Sbjct: 163 --VFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEI 220

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           H   +R  +    +V NALITMY +C D+ +A +LF    ++  I+WN+M+SGY      
Sbjct: 221 HAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
            E   LF  M    V+P+ +T+ ++   C  + N + G+  H Y++ ++ F   + + NS
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVV-KSEFGGDISMNNS 339

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L++MY+  G++ EA++VF  M  +D V++T++IA          A++ ++ M    I PD
Sbjct: 340 LIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPD 399

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            +T+V+VLSAC+  G +  G +  E +    G+   +     ++D+Y +   ++ A E+ 
Sbjct: 400 EITLVSVLSACACIGHLDLGIRLHE-IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVF 458

Query: 573 TKMPYTPTSAMWATLLGACQIHRNT 597
             +      + W +L+   +I+  +
Sbjct: 459 RNISGKNVVS-WTSLILGLRINNRS 482



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 125/252 (49%), Gaps = 7/252 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA E +  + +     D +  +   ++  C  +  L  G +LH  AI  GL  + ++   
Sbjct: 383 KAVETYKMMELEGILPDEI--TLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPW-NLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
           L+  Y+     +NA  +  N + +  + W +L++ L + +  + EAL  ++QM+   ++ 
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSF-EALLFFRQMK-ESMKP 498

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           ++ T  SVL AC  +  +  G+ +H+  +     +  F+ NA++ MY + G+   A   F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           +   ++D  +WN +++ YA +G  K A +LF +M E  +  + IT+ ++   C ++G   
Sbjct: 559 NSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617

Query: 293 GVLELLSRMRTQ 304
             LE  + M+ +
Sbjct: 618 EGLEYFNIMKNK 629


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 207/631 (32%), Positives = 344/631 (54%), Gaps = 40/631 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  V  +A+GK++HA  I  G E +  +   L+T Y      +NA  L +  
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +IS Y  +G   E L ++  M+   +  D  T  +V  AC  + +   GR
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   + +     + ++N+L+ MY   G+++ A  +F +M  +D VSW  MI++  S  
Sbjct: 320 GVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK 379

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L  +A + +  M+ EG+  + IT  ++                                 
Sbjct: 380 LPFKAVETYKMMELEGILPDEITLVSV--------------------------------- 406

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +G L LG  +H  A++     +  V N+LI MYS+CK + +A  +F+  + K
Sbjct: 407 --LSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGK 464

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++++W S++ G    + + E+   FR+M +  ++PN VT+ S+L  CAR+  L  GKE H
Sbjct: 465 NVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIH 523

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            + LR  +  +  L  N++++MY R G+   A + F+   ++D   +  L+ GY  QG+ 
Sbjct: 524 AHALRTGVGFDGFLP-NAILDMYVRCGRKVPALNQFN-SQKKDVTAWNILLTGYAQQGQA 581

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           ++A++LF++M + +I PD +T +++L ACS SG+V EG + F  M + Y + P L+H+AC
Sbjct: 582 KLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYAC 641

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           +VD+ GRAG L+ A + I  MP  P +A+W  LL AC+IHRN  +GE AA+++ E   ++
Sbjct: 642 VVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKS 701

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
            GYY+L+ N+YA  G WDK++KVR+ MR+ G+   PGC+WV+       FL  D S+ Q+
Sbjct: 702 VGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQS 761

Query: 675 QEIYPLLGGLTELMKDAGY-VVKEEFCSEEE 704
           +EI  +L G    MK+ G+  +K  F SE E
Sbjct: 762 KEINGVLDGFCSKMKENGFGNLKSSFTSEIE 792



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 151/528 (28%), Positives = 256/528 (48%), Gaps = 55/528 (10%)

Query: 44  LKDFAGRGNLSKA---FEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACA 100
           L++   +GNL +A    E+   +RI     +V  D++  ++  C   +A  +G +++   
Sbjct: 69  LRELCLQGNLEQAMKRLESMLELRI-----EVEEDAYIALLRLCEWRRAPDEGSRVYELV 123

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
            +        L   L++ +  F    +A ++    + R    WN+L+  Y + G + EAL
Sbjct: 124 SSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEAL 183

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMY 219
            +Y +M    IR + +T+PSVLK C  + D+  G+ +H+  I    E  + V NAL++MY
Sbjct: 184 NLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMY 243

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G +  AR LFDKM +RD +SWN MIS Y   G   E  +LF  M+E  V+ ++IT  
Sbjct: 244 VKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMT 303

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           T+A  C          ELL   R                         LG+ +HG  V+ 
Sbjct: 304 TVASAC----------ELLDNER-------------------------LGRGVHGYVVKS 328

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +G   ++ N+LI MYS    L  A  +F     K +++W +M++         ++   +
Sbjct: 329 EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY 388

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           + M   G+ P+ +T+ S+L  CA + +L  G   H   ++  + + H+++ NSL++MY++
Sbjct: 389 KMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVS-HVIVSNSLIDMYSK 447

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
              V  A  VF  +S ++ V++TSLI G  I      AL  F +M K  +KP+ VT+++V
Sbjct: 448 CKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISV 506

Query: 520 LSACSHSGLVVEGQK----QFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           LSAC+  G ++ G++             G  P       ++D+Y R G
Sbjct: 507 LSACARIGALMRGKEIHAHALRTGVGFDGFLPN-----AILDMYVRCG 549



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 207/445 (46%), Gaps = 39/445 (8%)

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE-WSLFVH 212
           G   +A+   + M   RI  +   Y ++L+ C      D G  V+  + +      + + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           NAL+SM+ +FG +  A  +F KM ERD                                 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERD--------------------------------- 162

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
             V +WN + GG  + G F   L L  RM   E   +       L  C+ V  +  GKEI
Sbjct: 163 --VFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEI 220

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           H   +R  +    +V NALITMY +C D+ +A +LF    ++  I+WN+M+SGY      
Sbjct: 221 HAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
            E   LF  M    V+P+ +T+ ++   C  + N + G+  H Y++ ++ F   + + NS
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVV-KSEFGGDISMNNS 339

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L++MY+  G++ EA++VF  M  +D V++T++IA          A++ ++ M    I PD
Sbjct: 340 LIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPD 399

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            +T+V+VLSAC+  G +  G +  E +    G+   +     ++D+Y +   ++ A E+ 
Sbjct: 400 EITLVSVLSACACIGHLDLGIRLHE-IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVF 458

Query: 573 TKMPYTPTSAMWATLLGACQIHRNT 597
             +      + W +L+   +I+  +
Sbjct: 459 RNISGKNVVS-WTSLILGLRINNRS 482



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 125/252 (49%), Gaps = 7/252 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA E +  + +     D +  +   ++  C  +  L  G +LH  AI  GL  + ++   
Sbjct: 383 KAVETYKMMELEGILPDEI--TLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPW-NLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
           L+  Y+     +NA  +  N + +  + W +L++ L + +  + EAL  ++QM+   ++ 
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSF-EALLFFRQMK-ESMKP 498

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           ++ T  SVL AC  +  +  G+ +H+  +     +  F+ NA++ MY + G+   A   F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           +   ++D  +WN +++ YA +G  K A +LF +M E  +  + IT+ ++   C ++G   
Sbjct: 559 NSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617

Query: 293 GVLELLSRMRTQ 304
             LE  + M+ +
Sbjct: 618 EGLEYFNIMKNK 629


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 211/674 (31%), Positives = 347/674 (51%), Gaps = 68/674 (10%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R++    +   A +G +++A   F ++ +     D V  + A ++  C  V AL  GKQ 
Sbjct: 317 RVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCV--TVASLLSACASVGALPNGKQF 374

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H+ AI  G+  + V+   L+  Y            V+ S+I+    + L    Y +    
Sbjct: 375 HSYAIKAGMTSDIVVEGSLLDLY------------VKCSDIKTAHEFFLC---YGQLDNL 419

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNAL 215
            ++  ++ QMQ   I  + FTYPS+LK C  +   D G  +H+  +    +++++V + L
Sbjct: 420 NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVL 479

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MY K G++D                                A ++F  ++E     +V
Sbjct: 480 IDMYAKHGKLD-------------------------------HALKIFRRLKEN----DV 504

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
           ++W  +  G  +   F   L L   M+ Q    D++     + AC+ + AL  G++IH  
Sbjct: 505 VSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQ 564

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           +    Y +  ++ NAL+++Y+RC  +R AY  F     K  ++WNS++SG+      EE+
Sbjct: 565 SCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEA 624

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             +F +M ++G+E N  T  S +   A +AN++ GK+ H  I R+  ++    + N+L+ 
Sbjct: 625 LNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMI-RKTGYDSETEVSNALIT 683

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           +YA+ G +             D++++ S+I GY   G G  ALKLFE+M +  + P+HVT
Sbjct: 684 LYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVT 730

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            V VLSACSH GLV EG   F  M+  + + P+ EH+AC+VDL GR+GLL++AK  + +M
Sbjct: 731 FVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEM 790

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P  P + +W TLL AC +H+N  IGE+AA  LLE  P++S  YVL++NMYA +G WD   
Sbjct: 791 PIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRD 850

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
           + R  M+D GV+K PG +WV+  N    F   D ++ +A  IY  L GL     + GYV 
Sbjct: 851 RTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVP 910

Query: 696 K-EEFCSEEEIVEE 708
           +     S+ EI ++
Sbjct: 911 RCNSLLSDAEIRQK 924



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/536 (24%), Positives = 239/536 (44%), Gaps = 68/536 (12%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           C G   +    +Q+HA  I  G E +  +   L+  Y      ++A  + EN   R  + 
Sbjct: 173 CSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVS 232

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           W  +IS   ++G+  EA+ ++ Q+              VL AC ++   +FG+ +H  + 
Sbjct: 233 WVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVL 278

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                   +V NALV++Y + G +  A ++F  M +RD VS+N++IS  A +G    A  
Sbjct: 279 KQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALA 338

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTG-------------------------------- 289
           LF +M  +  + + +T  ++   C   G                                
Sbjct: 339 LFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYV 398

Query: 290 -------------------NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
                              N     ++ ++M+ +    +       L  C+ +GA  LG+
Sbjct: 399 KCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGE 458

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           +IH   ++  +     V + LI MY++   L HA  +F+   E  +++W +M++GYT  D
Sbjct: 459 QIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHD 518

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
              E+  LF+EM   G++ + +  AS +  CA +  L  G++ H        +++ L + 
Sbjct: 519 KFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSG-YSDDLSIG 577

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+LV +YAR GKV EA + FD +  +D V++ SL++G+   G    AL +F +MNK  ++
Sbjct: 578 NALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLE 637

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
            +  T  + +SA ++   V  G KQ   M    G   + E    ++ LY + G ++
Sbjct: 638 INSFTFGSAVSAAANIANVRIG-KQIHGMIRKTGYDSETEVSNALITLYAKCGTID 692



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 210/481 (43%), Gaps = 68/481 (14%)

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
           KL+ FY +F   N A  + +   IR    WN + + ++ +        ++++M ++ +  
Sbjct: 102 KLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEF 161

Query: 174 DNFTYPSVLKAC-GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
           D   +  VL+ C G  +   F   +H+  I +  E S F+ N L+ +Y K G +  A+++
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           F+ +  RD+VSW  MIS  +  G  +EA  LF +                          
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQ-------------------------- 255

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
                                  I L AC+ V   + GK++HG  ++  +     V NAL
Sbjct: 256 -----------------------IVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNAL 292

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           +T+YSR  +L  A  +F   +++  +++NS++SG         +  LF++M     +P+ 
Sbjct: 293 VTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDC 352

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           VT+AS+L  CA V  L +GK+FH Y ++  M ++ +++  SL+++Y +   +  A   F 
Sbjct: 353 VTVASLLSACASVGALPNGKQFHSYAIKAGMTSD-IVVEGSLLDLYVKCSDIKTAHEFFL 411

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
              + D +  +                ++F +M    I P+  T  ++L  C+  G    
Sbjct: 412 CYGQLDNLNKS---------------FQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G+ Q        G    +   + ++D+Y + G L+ A +I  ++      +  A + G  
Sbjct: 457 GE-QIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYT 515

Query: 592 Q 592
           Q
Sbjct: 516 Q 516


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 206/641 (32%), Positives = 331/641 (51%), Gaps = 39/641 (6%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA E F R+ +     D   ++ A ++  C     L +G+QLHA    LG   N  +   
Sbjct: 332 KAMELFKRMHLDGLEPDS--NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 389

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  YA  +    A      + +   + WN+++  Y        +  +++QMQ   I  +
Sbjct: 390 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 449

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
            +TYPS+LK C  + D++ G  +HS  I    + + +V + L+ MY K G++D A     
Sbjct: 450 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA----- 504

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
                    W+ +I  +A K                    +V++W T+  G  +      
Sbjct: 505 ---------WDILIR-FAGK--------------------DVVSWTTMIAGYTQYNFDDK 534

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
            L    +M  +    D V     + AC+ + ALK G++IH  A    +      +NAL+T
Sbjct: 535 ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVT 594

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           +YSRC  +  +Y+ F+ T     I WN+++SG+      EE+  +F  M R G++ N  T
Sbjct: 595 LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFT 654

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S +   +  AN++ GK+ H  I +   ++    + N+L+ MYA+ G + +A+  F  +
Sbjct: 655 FGSAVKAASETANMKQGKQVHAVITKTG-YDSETEVCNALISMYAKCGSISDAEKQFLEV 713

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           S ++EV++ ++I  Y   G G  AL  F++M  + ++P+HVT+V VLSACSH GLV +G 
Sbjct: 714 STKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI 773

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
             FE M S YG+ P+ EH+ C+VD+  RAGLL++AKE I +MP  P + +W TLL AC +
Sbjct: 774 AYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVV 833

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           H+N  IGE+AA  LLE  PE+S  YVL++N+YA +  WD     R  M++ GV+K PG +
Sbjct: 834 HKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQS 893

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           W++  N    F V D ++  A EI+     LT+   + GYV
Sbjct: 894 WIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 934



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 138/529 (26%), Positives = 243/529 (45%), Gaps = 45/529 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCC-GKVKALAQGKQLHACA 100
           +K+ A R  + + F  F R+     S +V  +  +F+ ++  C G   A    +Q+HA  
Sbjct: 118 IKELASRNLIGEVFGLFVRM----VSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARI 173

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           +  GL  + V+   L+  Y+     + A  + +   ++    W  +IS   ++   AEA+
Sbjct: 174 LYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAI 233

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMY 219
            ++  M    I    + + SVL AC ++  ++ G  +H  +         +V NALVS+Y
Sbjct: 234 RLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLY 293

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
              G +  A  +F  M +RDAV++NT+I+  +  G  ++A +LF  M  +G+E +    N
Sbjct: 294 FHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS---N 350

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           T+A   +                                ACS  G L  G+++H    + 
Sbjct: 351 TLASLVV--------------------------------ACSADGTLFRGQQLHAYTTKL 378

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +     +  AL+ +Y++C D+  A   F  T  ++++ WN ML  Y  LD    S  +F
Sbjct: 379 GFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF 438

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R+M    + PN  T  SIL  C R+ +L+ G++ H  I+ +  F  +  + + L++MYA+
Sbjct: 439 RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII-KTNFQLNAYVCSVLIDMYAK 497

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            GK+  A  +    + +D V++T++IAGY        AL  F +M    I+ D V +   
Sbjct: 498 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 557

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           +SAC+    + EGQ Q      + G    L     +V LY R G + ++
Sbjct: 558 VSACAGLQALKEGQ-QIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 605



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 189/412 (45%), Gaps = 52/412 (12%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMM-DVDFGRVVHSCI-------DACHEWSLFVHNALVS 217
           +++R IR ++ T   +L+ C +    +D GR +HS I       + C    LF       
Sbjct: 35  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLF------D 88

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
            Y   G +  A ++FD+M ER   +WN MI   AS+ L  E F LFV M  E V  N   
Sbjct: 89  FYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPN--- 145

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG-ALKLGKEIHGSA 336
                      G F GVLE                      AC     A  + ++IH   
Sbjct: 146 ----------EGTFSGVLE----------------------ACRGGSVAFDVVEQIHARI 173

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           +     +   V N LI +YSR   +  A  +F     K   +W +M+SG +  +C  E+ 
Sbjct: 174 LYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAI 233

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF +M+  G+ P     +S+L  C ++ +L+ G++ H  +L+   F+    + N+LV +
Sbjct: 234 RLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG-FSSDTYVCNALVSL 292

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y   G +  A+ +F  MS+RD VTY +LI G    G G  A++LF+ M+ + ++PD  T+
Sbjct: 293 YFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTL 352

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
            +++ ACS  G +  GQ Q    T+  G     +    +++LY +   +  A
Sbjct: 353 ASLVVACSADGTLFRGQ-QLHAYTTKLGFASNNKIEGALLNLYAKCADIETA 403



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/441 (22%), Positives = 197/441 (44%), Gaps = 45/441 (10%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           +L  +F  F +++I     ++V + + +  I+  C ++  L  G+Q+H+  I    + N 
Sbjct: 430 DLRNSFRIFRQMQI----EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 485

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            +   L+  YA     + A  ++     +  + W  +I+ Y +  F  +AL  ++QM  R
Sbjct: 486 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 545

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS--CIDACHEWSLFVHNALVSMYGKFGQVDV 227
            IR D     + + AC  +  +  G+ +H+  C+       L   NALV++Y + G+++ 
Sbjct: 546 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSS-DLPFQNALVTLYSRCGKIEE 604

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           +   F++    D ++WN ++S +   G  +EA ++FV M  EG++ N  T+ +       
Sbjct: 605 SYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGS------- 657

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        + A S    +K GK++H    +  Y     V
Sbjct: 658 ----------------------------AVKAASETANMKQGKQVHAVITKTGYDSETEV 689

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            NALI+MY++C  +  A   F   + K+ ++WN++++ Y+      E+   F +M  S V
Sbjct: 690 CNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV 749

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN+VT+  +L  C+ +  +  G  +   +      +     +  +V+M  R+G +  AK
Sbjct: 750 RPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAK 809

Query: 468 SVFDLMS-RRDEVTYTSLIAG 487
                M  + D + + +L++ 
Sbjct: 810 EFIQEMPIKPDALVWRTLLSA 830



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 406 GVEPNYVTIASILPLCARV-ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           G+ PN+ T+  +L  C +   +L  G++ H  IL+  + + +  L   L + Y   G + 
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGL-DSNGCLSEKLFDFYLFKGDLY 97

Query: 465 EAKSVFDLMSRRDEVTYTSLI---AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            A  VFD M  R   T+  +I   A   + GE      LF  M    + P+  T   VL 
Sbjct: 98  GAFKVFDEMPERTIFTWNKMIKELASRNLIGE---VFGLFVRMVSENVTPNEGTFSGVLE 154

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           AC    +  +  +Q        G+         ++DLY R G ++ A+ +   +     S
Sbjct: 155 ACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS 214

Query: 582 AMWATLLG 589
           +  A + G
Sbjct: 215 SWVAMISG 222


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 210/623 (33%), Positives = 326/623 (52%), Gaps = 35/623 (5%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+ ++  C   + L  G+Q+H   +  G EK+      LV  Y+       A  + E   
Sbjct: 208 FSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMP 267

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
               + WN  IS  V  G    AL +  QM+S  +  + FT  SVLKAC      + GR 
Sbjct: 268 AADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQ 327

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H   + A  ++  FV   LV MY K G +D AR++FD M  RD + WN +IS  +  G 
Sbjct: 328 IHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGR 387

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             E   LF  M++EG++++V    T+A     T + + +        T++ +  ++A  I
Sbjct: 388 HGEVLSLFHRMRKEGLDLDV-NRTTLASVLKSTASSEAICH------TRQVH--ALAEKI 438

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
           GL + SH                        V N LI  Y +C  L +A  +FK +    
Sbjct: 439 GLLSDSH------------------------VINGLIDSYWKCGQLDYAIKVFKESRSDD 474

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           II+  +M++  +  D  E++  LF +M R G+EP+   ++S+L  C  ++  + GK+ H 
Sbjct: 475 IISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHA 534

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           ++++R  F   +   N+LV  YA+ G + +A   F  +  R  V+++++I G    G G+
Sbjct: 535 HLIKR-QFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGK 593

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL LF  M    + P+H+T+ +VLSAC+H+GLV + +K FE M   +GI    EH+ACM
Sbjct: 594 RALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACM 653

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           +D+ GRAG L  A E++  MP+   +A+W  LLGA ++HR+  +G  AAEKL    PE S
Sbjct: 654 IDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKS 713

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G +VL+AN YA+ G WD++AKVR  M+D  V+K P  +WV+  +    F+V D S+   +
Sbjct: 714 GTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTR 773

Query: 676 EIYPLLGGLTELMKDAGYVVKEE 698
           +IY  L  L +LM  AGYV   E
Sbjct: 774 DIYGKLAELGDLMNKAGYVPNVE 796



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 175/384 (45%), Gaps = 45/384 (11%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L+++Y +      AR +FD++ +   VSW+++++AY++ G+ ++A   F  M+  GV 
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVP 100

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            N                   VL+    +R                          G ++
Sbjct: 101 CNEFALPV-------------VLKCAPDVR-------------------------FGAQV 122

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK----MTAEKSIITWNSMLSGYTH 388
           H  AV         V NAL+ +Y     +  A  +F     +  E++ ++WN+M+S Y  
Sbjct: 123 HALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVK 182

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
            D + ++  +FREM  SG  PN    + ++  C    +L+ G++ H  ++R   + + + 
Sbjct: 183 NDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTG-YEKDVF 241

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
             N+LV+MY++ G +  A +VF+ M   D V++ + I+G    G    AL+L  +M  + 
Sbjct: 242 TANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSG 301

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + P+  T+ +VL AC+ +G    G++    M      F +      +VD+Y + G L+ A
Sbjct: 302 LVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKHGFLDDA 360

Query: 569 KEIITKMPYTPTSAMWATLLGACQ 592
           +++   MP      +W  L+  C 
Sbjct: 361 RKVFDFMPRRDL-ILWNALISGCS 383



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 184/426 (43%), Gaps = 40/426 (9%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  +A E   +++ +    +V   + + ++  C    A   G+Q+H   +    + +  
Sbjct: 285 GHDHRALELLLQMKSSGLVPNVF--TLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEF 342

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   LV  YA     ++A  + +    R  + WN LIS    DG + E L ++ +M+   
Sbjct: 343 VAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEG 402

Query: 171 IRGD--NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDV 227
           +  D    T  SVLK+      +   R VH+  +     S   V N L+  Y K GQ+D 
Sbjct: 403 LDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDY 462

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A ++F +    D +S  TM++A +     ++A +LFV+M  +G+E +    +++      
Sbjct: 463 AIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSL------ 516

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        L AC+ + A + GK++H   ++  +      
Sbjct: 517 -----------------------------LNACTSLSAYEQGKQVHAHLIKRQFTSDVFA 547

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            NAL+  Y++C  +  A + F    E+ I++W++M+ G       + +  LF  M   GV
Sbjct: 548 GNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGV 607

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN++T+ S+L  C     +   K++   +      +     +  ++++  R+GK+ +A 
Sbjct: 608 APNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAM 667

Query: 468 SVFDLM 473
            + + M
Sbjct: 668 ELVNNM 673



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 141/315 (44%), Gaps = 21/315 (6%)

Query: 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
           MRT ET   ++A     G      +L  G  +H   ++   G      N L+T+YSRC+ 
Sbjct: 1   MRTPETIGSALAR---FGTSR---SLFAGAHLHSHLLKS--GLLAGFSNHLLTLYSRCRL 52

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
              A  +F    +   ++W+S+++ Y++     ++   FR M   GV  N   +  +L  
Sbjct: 53  PSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK- 111

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD----LMSRR 476
           CA   +++ G + H   +   + ++ + + N+LV +Y   G V EA+ +FD    +   R
Sbjct: 112 CA--PDVRFGAQVHALAVATRLVHD-VFVANALVAVYGGFGMVDEARRMFDEYVGVGGER 168

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           + V++ ++I+ Y    +   A+ +F EM  +  +P+      V++AC+ S   +E  +Q 
Sbjct: 169 NAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGS-RDLEAGRQV 227

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
                  G    +     +VD+Y + G +  A  +  KMP     + W   +  C  H  
Sbjct: 228 HGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVS-WNAFISGCVTH-- 284

Query: 597 TGIGEWAAEKLLETR 611
            G    A E LL+ +
Sbjct: 285 -GHDHRALELLLQMK 298


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 216/655 (32%), Positives = 348/655 (53%), Gaps = 42/655 (6%)

Query: 61  TRIRITAASHDVVLDSF---------AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           T +R+  A H ++L +F          H++    K   LA+ +++         ++ P  
Sbjct: 26  TGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRV--------FDEMPD- 76

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQ 165
            P L T  A  S   ++  + +   +   +P      +N LI+ +   G  A ++ +Y+ 
Sbjct: 77  -PNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 166 M-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL------FVHNALVSM 218
           + +   +R    T  +++     + D   G  VH     C    L      FV + LV M
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVH-----CQVLRLGFGAYAFVGSPLVDM 190

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G +  ARR+F +M  +  V +NT+I+      + ++A  LF  M    V+ + ITW
Sbjct: 191 YAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITW 246

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
            T+  G  + G     L++  RMR +   +D       L AC  + AL+ GK+IH    R
Sbjct: 247 TTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITR 306

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             Y +   V +AL+ MYS+C+ +R A  +F+    ++II+W +M+ GY    C+EE+   
Sbjct: 307 TWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRA 366

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F EM   G++P+  T+ S++  CA +A+L+ G +FHC  L   +   ++ + N+LV +Y 
Sbjct: 367 FSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM-RYITVSNALVTLYG 425

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           + G + +A  +FD MS  D+V++T+L+ GY   G+ +  + LFE+M  N +KPD VT + 
Sbjct: 426 KCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIG 485

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           VLSACS +GLV +G   F+ M   +GI P  +H+ CM+DLY R+G   +A+E I +MP++
Sbjct: 486 VLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHS 545

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638
           P +  WATLL +C++  N  IG+WAAE LLET P+N   YVL+ +M+AA G W ++A +R
Sbjct: 546 PDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLR 605

Query: 639 TCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
             MRD  V+K PGC+W+   N    F  DD S+  +  IY  L  L   M + GY
Sbjct: 606 RGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGY 660


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 216/655 (32%), Positives = 348/655 (53%), Gaps = 42/655 (6%)

Query: 61  TRIRITAASHDVVLDSF---------AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           T +R+  A H ++L +F          H++    K   LA+ +++         ++ P  
Sbjct: 26  TGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRV--------FDEMPD- 76

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQ 165
            P L T  A  S   ++  + +   +   +P      +N LI+ +   G  A ++ +Y+ 
Sbjct: 77  -PNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 166 M-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL------FVHNALVSM 218
           + +   +R    T  +++     + D   G  VH     C    L      FV + LV M
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVH-----CQVLRLGFGAYAFVGSPLVDM 190

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G +  ARR+F +M  +  V +NT+I+      + ++A  LF  M    V+ + ITW
Sbjct: 191 YAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITW 246

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
            T+  G  + G     L++  RMR +   +D       L AC  + AL+ GK+IH    R
Sbjct: 247 TTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITR 306

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             Y +   V +AL+ MYS+C+ +R A  +F+    ++II+W +M+ GY    C+EE+   
Sbjct: 307 TWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRA 366

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F EM   G++P+  T+ S++  CA +A+L+ G +FHC  L   +   ++ + N+LV +Y 
Sbjct: 367 FSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM-RYITVSNALVTLYG 425

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           + G + +A  +FD MS  D+V++T+L+ GY   G+ +  + LFE+M  N +KPD VT + 
Sbjct: 426 KCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIG 485

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           VLSACS +GLV +G   F+ M   +GI P  +H+ CM+DLY R+G   +A+E I +MP++
Sbjct: 486 VLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHS 545

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638
           P +  WATLL +C++  N  IG+WAAE LLET P+N   YVL+ +M+AA G W ++A +R
Sbjct: 546 PDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLR 605

Query: 639 TCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
             MRD  V+K PGC+W+   N    F  DD S+  +  IY  L  L   M + GY
Sbjct: 606 RGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGY 660


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 206/641 (32%), Positives = 331/641 (51%), Gaps = 39/641 (6%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA E F R+ +     D   ++ A ++  C     L +G+QLHA    LG   N  +   
Sbjct: 372 KAMELFKRMHLDGLEPDS--NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 429

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  YA  +    A      + +   + WN+++  Y        +  +++QMQ   I  +
Sbjct: 430 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
            +TYPS+LK C  + D++ G  +HS  I    + + +V + L+ MY K G++D A     
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA----- 544

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
                    W+ +I  +A K                    +V++W T+  G  +      
Sbjct: 545 ---------WDILIR-FAGK--------------------DVVSWTTMIAGYTQYNFDDK 574

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
            L    +M  +    D V     + AC+ + ALK G++IH  A    +      +NAL+T
Sbjct: 575 ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVT 634

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           +YSRC  +  +Y+ F+ T     I WN+++SG+      EE+  +F  M R G++ N  T
Sbjct: 635 LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFT 694

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S +   +  AN++ GK+ H  I +   ++    + N+L+ MYA+ G + +A+  F  +
Sbjct: 695 FGSAVKAASETANMKQGKQVHAVITKTG-YDSETEVCNALISMYAKCGSISDAEKQFLEV 753

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           S ++EV++ ++I  Y   G G  AL  F++M  + ++P+HVT+V VLSACSH GLV +G 
Sbjct: 754 STKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI 813

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
             FE M S YG+ P+ EH+ C+VD+  RAGLL++AKE I +MP  P + +W TLL AC +
Sbjct: 814 AYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVV 873

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           H+N  IGE+AA  LLE  PE+S  YVL++N+YA +  WD     R  M++ GV+K PG +
Sbjct: 874 HKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQS 933

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           W++  N    F V D ++  A EI+     LT+   + GYV
Sbjct: 934 WIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 974



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 138/529 (26%), Positives = 243/529 (45%), Gaps = 45/529 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCC-GKVKALAQGKQLHACA 100
           +K+ A R  + + F  F R+     S +V  +  +F+ ++  C G   A    +Q+HA  
Sbjct: 158 IKELASRNLIGEVFGLFVRM----VSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARI 213

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           +  GL  + V+   L+  Y+     + A  + +   ++    W  +IS   ++   AEA+
Sbjct: 214 LYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAI 273

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMY 219
            ++  M    I    + + SVL AC ++  ++ G  +H  +         +V NALVS+Y
Sbjct: 274 RLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLY 333

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
              G +  A  +F  M +RDAV++NT+I+  +  G  ++A +LF  M  +G+E +    N
Sbjct: 334 FHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS---N 390

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           T+A   +                                ACS  G L  G+++H    + 
Sbjct: 391 TLASLVV--------------------------------ACSADGTLFRGQQLHAYTTKL 418

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +     +  AL+ +Y++C D+  A   F  T  ++++ WN ML  Y  LD    S  +F
Sbjct: 419 GFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF 478

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R+M    + PN  T  SIL  C R+ +L+ G++ H  I+ +  F  +  + + L++MYA+
Sbjct: 479 RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII-KTNFQLNAYVCSVLIDMYAK 537

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            GK+  A  +    + +D V++T++IAGY        AL  F +M    I+ D V +   
Sbjct: 538 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 597

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           +SAC+    + EGQ Q      + G    L     +V LY R G + ++
Sbjct: 598 VSACAGLQALKEGQ-QIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 645



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 189/412 (45%), Gaps = 52/412 (12%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMM-DVDFGRVVHSCI-------DACHEWSLFVHNALVS 217
           +++R IR ++ T   +L+ C +    +D GR +HS I       + C    LF       
Sbjct: 75  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLF------D 128

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
            Y   G +  A ++FD+M ER   +WN MI   AS+ L  E F LFV M  E V  N   
Sbjct: 129 FYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPN--- 185

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG-ALKLGKEIHGSA 336
                      G F GVLE                      AC     A  + ++IH   
Sbjct: 186 ----------EGTFSGVLE----------------------ACRGGSVAFDVVEQIHARI 213

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           +     +   V N LI +YSR   +  A  +F     K   +W +M+SG +  +C  E+ 
Sbjct: 214 LYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAI 273

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF +M+  G+ P     +S+L  C ++ +L+ G++ H  +L+   F+    + N+LV +
Sbjct: 274 RLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG-FSSDTYVCNALVSL 332

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y   G +  A+ +F  MS+RD VTY +LI G    G G  A++LF+ M+ + ++PD  T+
Sbjct: 333 YFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTL 392

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
            +++ ACS  G +  GQ Q    T+  G     +    +++LY +   +  A
Sbjct: 393 ASLVVACSADGTLFRGQ-QLHAYTTKLGFASNNKIEGALLNLYAKCADIETA 443



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/441 (22%), Positives = 197/441 (44%), Gaps = 45/441 (10%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           +L  +F  F +++I     ++V + + +  I+  C ++  L  G+Q+H+  I    + N 
Sbjct: 470 DLRNSFRIFRQMQI----EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            +   L+  YA     + A  ++     +  + W  +I+ Y +  F  +AL  ++QM  R
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 585

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS--CIDACHEWSLFVHNALVSMYGKFGQVDV 227
            IR D     + + AC  +  +  G+ +H+  C+       L   NALV++Y + G+++ 
Sbjct: 586 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSS-DLPFQNALVTLYSRCGKIEE 644

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           +   F++    D ++WN ++S +   G  +EA ++FV M  EG++ N  T+ +       
Sbjct: 645 SYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGS------- 697

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        + A S    +K GK++H    +  Y     V
Sbjct: 698 ----------------------------AVKAASETANMKQGKQVHAVITKTGYDSETEV 729

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            NALI+MY++C  +  A   F   + K+ ++WN++++ Y+      E+   F +M  S V
Sbjct: 730 CNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV 789

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN+VT+  +L  C+ +  +  G  +   +      +     +  +V+M  R+G +  AK
Sbjct: 790 RPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAK 849

Query: 468 SVFDLMS-RRDEVTYTSLIAG 487
                M  + D + + +L++ 
Sbjct: 850 EFIQEMPIKPDALVWRTLLSA 870



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 406 GVEPNYVTIASILPLCARV-ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           G+ PN+ T+  +L  C +   +L  G++ H  IL+  + + +  L   L + Y   G + 
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGL-DSNGCLSEKLFDFYLFKGDLY 137

Query: 465 EAKSVFDLMSRRDEVTYTSLI---AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            A  VFD M  R   T+  +I   A   + GE      LF  M    + P+  T   VL 
Sbjct: 138 GAFKVFDEMPERTIFTWNKMIKELASRNLIGE---VFGLFVRMVSENVTPNEGTFSGVLE 194

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           AC    +  +  +Q        G+         ++DLY R G ++ A+ +   +     S
Sbjct: 195 ACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS 254

Query: 582 AMWATLLG 589
           +  A + G
Sbjct: 255 SWVAMISG 262


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 200/611 (32%), Positives = 341/611 (55%), Gaps = 50/611 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  +  +  GK +H   I  G   + V++   V  YA  +++ +A  L +  
Sbjct: 108 TYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEM 167

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN +IS Y +DG   +AL ++++M+    + D+ T  +V+ +C  ++D++ G+
Sbjct: 168 PERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGK 227

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   + +      FV +ALV MYGK G +++A+ +F+++  +                
Sbjct: 228 EIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRK---------------- 271

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM-----RTQETYLD 309
                              NV++WN++  G    G+ K  +EL  RM     R   T L 
Sbjct: 272 -------------------NVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLS 312

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           S+     L ACS    L+LGK IHG  +R        V ++LI +Y +C ++  A  +F+
Sbjct: 313 SI-----LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQ 367

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
              + ++++WN M+SGY  +    E+  +F +M ++GV+P+ +T  S+LP C+++A L+ 
Sbjct: 368 NMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEK 427

Query: 430 GKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
           GKE H +I+   +  NE  ++  +L++MYA+ G V EA  +F+ +  RD V++TS+IA Y
Sbjct: 428 GKEIHNFIIESKLEINE--VVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAY 485

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           G  G+   ALKLFE+M ++  KPD VT +A+LSACSH+GLV EG   F +M + YG  P 
Sbjct: 486 GSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPA 545

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
           +EH++C++DL GR G L +A EI+ + P       + +TL  AC +H+   +GE     L
Sbjct: 546 VEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLL 605

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
           +E  P++   Y++++NMYA+   WD++ KVR  +++LG++K PGC+W++ G    PF+V+
Sbjct: 606 IEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVE 665

Query: 668 DTSNVQAQEIY 678
           D S+ QA  IY
Sbjct: 666 DKSHPQADMIY 676



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/519 (28%), Positives = 254/519 (48%), Gaps = 51/519 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP- 142
           C   K L QGK +H   ++LGL+ N  L   L+  Y S  L+ +A  + +   I  PL  
Sbjct: 13  CIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQT--IENPLDI 70

Query: 143 --WNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
             WN L++   ++  + E L V+ ++     ++ D FTYPSVLKAC  +  V +G++VH+
Sbjct: 71  TLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHT 130

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
                                          +       D V  ++ +  YA   ++++A
Sbjct: 131 ------------------------------HVIKSGFAMDVVVMSSAVGMYAKCNVFEDA 160

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF EM E     +V +WN +     + G  +  LEL   M+      DSV     + +
Sbjct: 161 IKLFDEMPER----DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISS 216

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +  L+ GKEIH   VR  +     V +AL+ MY +C  L  A  +F+    K++++W
Sbjct: 217 CARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSW 276

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           NSM++GY+    ++    LFR M   G+ P   T++SIL  C+R  NLQ GK  H YI+R
Sbjct: 277 NSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIR 336

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             +    + + +SL+++Y + G +  A++VF  M + + V++  +I+GY   G    AL 
Sbjct: 337 NRV-EADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALV 395

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE----HFACM 555
           +F +M K  +KPD +T  +VL ACS   ++ +G++        + I  +LE        +
Sbjct: 396 IFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHN-----FIIESKLEINEVVMGAL 450

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           +D+Y + G +++A  I  ++P     + W +++ A   H
Sbjct: 451 LDMYAKCGAVDEALHIFNQLPERDFVS-WTSMIAAYGSH 488



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 130/261 (49%), Gaps = 6/261 (2%)

Query: 33  EHIMRINLLETLKDFAG---RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           E I R N++      AG   +G+     E F R+          L + + I+  C +   
Sbjct: 266 EQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP--TLTTLSSILMACSRSVN 323

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L  GK +H   I   +E +  +   L+  Y       +A  + +N      + WN++IS 
Sbjct: 324 LQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISG 383

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           YV+ G Y EAL ++  M+   ++ D  T+ SVL AC ++  ++ G+ +H+  I++  E +
Sbjct: 384 YVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEIN 443

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
             V  AL+ MY K G VD A  +F+++ ERD VSW +MI+AY S G   EA +LF +MQ+
Sbjct: 444 EVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQ 503

Query: 269 EGVEVNVITWNTIAGGCLRTG 289
              + + +T+  I   C   G
Sbjct: 504 SDAKPDKVTFLAILSACSHAG 524



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 9/239 (3%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  +A   FT +R      D +  +F  ++  C ++  L +GK++H   I   LE N V
Sbjct: 388 GSYLEALVIFTDMRKAGVKPDAI--TFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 445

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           ++  L+  YA     + A  +      R  + W  +I+ Y   G   EAL ++++MQ   
Sbjct: 446 VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSD 505

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVA 228
            + D  T+ ++L AC     VD G    + + A + +   V  ++ L+ + G+ G++  A
Sbjct: 506 AKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREA 565

Query: 229 RRLFDKM--LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             +  +   +  D    +T+ SA   +    L ++  +L +E   +     +I  N  A
Sbjct: 566 YEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYA 624


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/644 (31%), Positives = 334/644 (51%), Gaps = 39/644 (6%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+   A E F  ++ +  S D V  + + ++  C  +  L +G QLH+     G+  + +
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCV--TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI 280

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  Y        A  +  +S+    + WNL++  + +    A++  ++ QMQ+  
Sbjct: 281 MEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG 340

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           IR + FTYP +L+ C    ++D G  +HS  +    E  ++V   L+ MY K+G ++ AR
Sbjct: 341 IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+ + + E+D                                   V++W ++  G ++  
Sbjct: 401 RVLEMLKEKD-----------------------------------VVSWTSMIAGYVQHE 425

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
             K  L     M+    + D++     +  C+ + A++ G +IH       Y    ++ N
Sbjct: 426 CCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWN 485

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ +Y+RC  +R A+  F+    K  ITWN ++SG+      EE+  +F  M +SGV+ 
Sbjct: 486 ALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKH 545

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T  S L   A +A ++ GK+ H  +++     E   + N+L+ +Y + G   +AK  
Sbjct: 546 NVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKME 604

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F  MS R+EV++ ++I      G G  AL LF++M K  IKP+ VT + VL+ACSH GLV
Sbjct: 605 FSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLV 664

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG   F+ M+  YGI P+ +H+AC++D++GRAG L++AK+ I +MP    + +W TLL 
Sbjct: 665 EEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLS 724

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++H+N  +GE+AA+ LLE  P +S  YVL++N YA T  W    +VR  MRD GVRK 
Sbjct: 725 ACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKE 784

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           PG +W++  NV   F V D  +  A++IY  L  + + +   GY
Sbjct: 785 PGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 828



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 246/519 (47%), Gaps = 39/519 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            + ++  C K +  AQG+ +HA     G      +   ++T Y     +  A  +  +  
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP 205

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + +N LIS + + G    AL ++++MQ   +  D  T  S+L AC  + D+  G  
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 197 VHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +HS +  A       +  +L+ +Y K G V+ A  +F+     + V WN M+ A+     
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             ++F+LF +MQ  G+  N  T+  I    LRT                           
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCI----LRT--------------------------- 354

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
               C+    + LG++IH  +V+  +     V   LI MYS+   L  A  + +M  EK 
Sbjct: 355 ----CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKD 410

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W SM++GY   +C +++   F+EM + G+ P+ + +AS +  CA +  ++ G + H 
Sbjct: 411 VVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHA 470

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I     ++  + +WN+LV +YAR G++ EA S F+ +  +DE+T+  L++G+   G   
Sbjct: 471 RIYVSG-YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHE 529

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            ALK+F  M+++ +K +  T V+ LSA ++   + +G++   R+      F + E    +
Sbjct: 530 EALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF-ETEVGNAL 588

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           + LYG+ G    AK   ++M        W T++ +C  H
Sbjct: 589 ISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQH 626



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 231/477 (48%), Gaps = 42/477 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA A+  GL K  ++   L+  Y+   L   A  + E  + R  + W  ++S Y ++G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC---IDACHEWSLFV 211
              EAL +Y+QM    +    +   SVL +C +      GR++H+       C E  +FV
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE--IFV 180

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            NA++++Y + G   +A R+F  M  RD V++NT+IS +A  G  + A ++F EMQ  G+
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             + +T +++                                   L AC+ +G L+ G +
Sbjct: 241 SPDCVTISSL-----------------------------------LAACASLGDLQKGTQ 265

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H    +        +  +L+ +Y +C D+  A ++F  +   +++ WN ML  +  ++ 
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             +S  LF +M  +G+ PN  T   IL  C     +  G++ H   ++   F   + +  
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTG-FESDMYVSG 384

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            L++MY++ G + +A+ V +++  +D V++TS+IAGY      + AL  F+EM K  I P
Sbjct: 385 VLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP 444

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           D++ + + +S C+    + +G +   R+  + G    +  +  +V+LY R G + +A
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIY-VSGYSGDVSIWNALVNLYARCGRIREA 500



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 180/385 (46%), Gaps = 38/385 (9%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            V N L+ +Y K G V  ARR+F+++  RD VSW  M+S YA  GL +EA  L+ +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           GV       +++   C +        EL ++                            G
Sbjct: 138 GVVPTPYVLSSVLSSCTKA-------ELFAQ----------------------------G 162

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           + IH    +  +     V NA+IT+Y RC   R A  +F     +  +T+N+++SG+   
Sbjct: 163 RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC 222

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              E +  +F EM  SG+ P+ VTI+S+L  CA + +LQ G + H Y+ +  + +++ ++
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDY-IM 281

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
             SL+++Y + G V  A  +F+   R + V +  ++  +G   +   + +LF +M    I
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +P+  T   +L  C+ +  +  G+ Q   ++   G    +     ++D+Y + G L KA+
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGE-QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 570 EIITKMPYTPTSAMWATLLGACQIH 594
            ++ +M        W +++     H
Sbjct: 401 RVL-EMLKEKDVVSWTSMIAGYVQH 424



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGAL-KLGKEIHGSAVRGCYGEYENVRNALI 352
           VL L +    Q   L  +     L AC   G   ++  EIH  AV    G+Y  V N LI
Sbjct: 25  VLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLI 84

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            +YS+   +  A  +F+  + +  ++W +MLSGY      EE+  L+R+M R+GV P   
Sbjct: 85  DLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPY 144

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
            ++S+L  C +      G+  H    +    +E + + N+++ +Y R G    A+ VF  
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE-IFVGNAVITLYLRCGSFRLAERVFCD 203

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  RD VT+ +LI+G+   G G  AL++FEEM  + + PD VT+ ++L+AC+  G + +G
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             Q        GI         ++DLY + G +  A  I      T    +W  +L A
Sbjct: 264 -TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNV-VLWNLMLVA 319


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/644 (31%), Positives = 334/644 (51%), Gaps = 39/644 (6%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+   A E F  ++ +  S D V  + + ++  C  +  L +G QLH+     G+  + +
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCV--TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI 280

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  Y        A  +  +S+    + WNL++  + +    A++  ++ QMQ+  
Sbjct: 281 MEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG 340

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           IR + FTYP +L+ C    ++D G  +HS  +    E  ++V   L+ MY K+G ++ AR
Sbjct: 341 IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+ + + E+D                                   V++W ++  G ++  
Sbjct: 401 RVLEMLKEKD-----------------------------------VVSWTSMIAGYVQHE 425

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
             K  L     M+    + D++     +  C+ + A++ G +IH       Y    ++ N
Sbjct: 426 CCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWN 485

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ +Y+RC  +R A+  F+    K  ITWN ++SG+      EE+  +F  M +SGV+ 
Sbjct: 486 ALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKH 545

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T  S L   A +A ++ GK+ H  +++     E   + N+L+ +Y + G   +AK  
Sbjct: 546 NVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKME 604

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F  MS R+EV++ ++I      G G  AL LF++M K  IKP+ VT + VL+ACSH GLV
Sbjct: 605 FSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLV 664

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG   F+ M+  YGI P+ +H+AC++D++GRAG L++AK+ I +MP    + +W TLL 
Sbjct: 665 EEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLS 724

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++H+N  +GE+AA+ LLE  P +S  YVL++N YA T  W    +VR  MRD GVRK 
Sbjct: 725 ACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKE 784

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           PG +W++  NV   F V D  +  A++IY  L  + + +   GY
Sbjct: 785 PGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 828



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 246/519 (47%), Gaps = 39/519 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            + ++  C K +  AQG+ +HA     G      +   ++T Y     +  A  +  +  
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP 205

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + +N LIS + + G    AL ++++MQ   +  D  T  S+L AC  + D+  G  
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 197 VHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +HS +  A       +  +L+ +Y K G V+ A  +F+     + V WN M+ A+     
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             ++F+LF +MQ  G+  N  T+  I    LRT                           
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCI----LRT--------------------------- 354

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
               C+    + LG++IH  +V+  +     V   LI MYS+   L  A  + +M  EK 
Sbjct: 355 ----CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKD 410

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W SM++GY   +C +++   F+EM + G+ P+ + +AS +  CA +  ++ G + H 
Sbjct: 411 VVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHA 470

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I     ++  + +WN+LV +YAR G++ EA S F+ +  +DE+T+  L++G+   G   
Sbjct: 471 RIYVSG-YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHE 529

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            ALK+F  M+++ +K +  T V+ LSA ++   + +G++   R+      F + E    +
Sbjct: 530 EALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF-ETEVGNAL 588

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           + LYG+ G    AK   ++M        W T++ +C  H
Sbjct: 589 ISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQH 626



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 231/477 (48%), Gaps = 42/477 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA A+  GL K  ++   L+  Y+   L   A  + E  + R  + W  ++S Y ++G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC---IDACHEWSLFV 211
              EAL +Y+QM    +    +   SVL +C +      GR++H+       C E  +FV
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE--IFV 180

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            NA++++Y + G   +A R+F  M  RD V++NT+IS +A  G  + A ++F EMQ  G+
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             + +T +++                                   L AC+ +G L+ G +
Sbjct: 241 SPDCVTISSL-----------------------------------LAACASLGDLQKGTQ 265

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H    +        +  +L+ +Y +C D+  A ++F  +   +++ WN ML  +  ++ 
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             +S  LF +M  +G+ PN  T   IL  C     +  G++ H   ++   F   + +  
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTG-FESDMYVSG 384

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            L++MY++ G + +A+ V +++  +D V++TS+IAGY      + AL  F+EM K  I P
Sbjct: 385 VLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP 444

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           D++ + + +S C+    + +G +   R+  + G    +  +  +V+LY R G + +A
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIY-VSGYSGDVSIWNALVNLYARCGRIREA 500



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 178/385 (46%), Gaps = 38/385 (9%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            V N L+ +Y K G V  ARR+F+++  RD VSW  M+S YA  GL +EA  L+ +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           GV       +++                                   L +C+       G
Sbjct: 138 GVVPTPYVLSSV-----------------------------------LSSCTKAELFAQG 162

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           + IH    +  +     V NA+IT+Y RC   R A  +F     +  +T+N+++SG+   
Sbjct: 163 RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC 222

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              E +  +F EM  SG+ P+ VTI+S+L  CA + +LQ G + H Y+ +  + +++ ++
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDY-IM 281

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
             SL+++Y + G V  A  +F+   R + V +  ++  +G   +   + +LF +M    I
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +P+  T   +L  C+ +  +  G+ Q   ++   G    +     ++D+Y + G L KA+
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGE-QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 570 EIITKMPYTPTSAMWATLLGACQIH 594
            ++ +M        W +++     H
Sbjct: 401 RVL-EMLKEKDVVSWTSMIAGYVQH 424



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGAL-KLGKEIHGSAVRGCYGEYENVRNALI 352
           VL L +    Q   L  +     L AC   G   ++  EIH  AV    G+Y  V N LI
Sbjct: 25  VLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLI 84

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            +YS+   +  A  +F+  + +  ++W +MLSGY      EE+  L+R+M R+GV P   
Sbjct: 85  DLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPY 144

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
            ++S+L  C +      G+  H    +    +E + + N+++ +Y R G    A+ VF  
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE-IFVGNAVITLYLRCGSFRLAERVFCD 203

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  RD VT+ +LI+G+   G G  AL++FEEM  + + PD VT+ ++L+AC+  G + +G
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             Q        GI         ++DLY + G +  A  I      T    +W  +L A
Sbjct: 264 -TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNV-VLWNLMLVA 319


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 204/673 (30%), Positives = 351/673 (52%), Gaps = 39/673 (5%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R+     +   A  GN   A E F  +R++  + D V  + A ++  C  +  L +GKQL
Sbjct: 209 RVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCV--TIASLLAACASIGDLNKGKQL 266

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H+  +  G+  + ++   L+  Y    +   A  + ++ +    + WNL++  Y +    
Sbjct: 267 HSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDL 326

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNAL 215
           A++  ++ QM +  +R + FTYP +L+ C    +++ G  +H   I    E  ++V   L
Sbjct: 327 AKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVL 386

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MY K+G +D ARR+ + +  +D                                   V
Sbjct: 387 IDMYSKYGWLDKARRILEVLEAKD-----------------------------------V 411

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
           ++W ++  G ++    K  LE    M+    + D++     + AC+ + A++ G++IH  
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSR 471

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
                Y    ++ NAL+ +Y+RC   + A+ LF+    K  ITWN M+SG+      EE+
Sbjct: 472 VYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEA 531

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             +F +M+++GV+ N  T  S +   A +A+++ GK+ H  +++    +E  +  N+L+ 
Sbjct: 532 LEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVA-NALIS 590

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           +Y + G + +AK  F  MS R+ V++ ++I      G G  AL LF++M +  +KP+ VT
Sbjct: 591 LYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVT 650

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            + VL+ACSH GLV EG   F+ M+S +GI P+ +H+AC+VD+ GRAG L++A++ + +M
Sbjct: 651 FIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEM 710

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P +  + +W TLL AC++H+N  IGE AA+ LLE  P +S  YVL++N YA TG W    
Sbjct: 711 PVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRD 770

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
            VR  M+D GVRK PG +W++  NV   F V D  +  A +IY  L  L + +   GY+ 
Sbjct: 771 HVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQ 830

Query: 696 KEEFCSEEEIVEE 708
              F   E+  E+
Sbjct: 831 GNYFLFHEKEKEQ 843



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 233/489 (47%), Gaps = 42/489 (8%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           C G VK       +HA AI  GL ++ +    L+  YA   L   A  + E  + R  + 
Sbjct: 51  CRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVS 110

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           W  ++S Y R+G   EA+ +Y QM    +    +   SVL AC +    + GR+VH+ + 
Sbjct: 111 WVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVY 170

Query: 202 --DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
              +C E    V NAL+++Y +FG + +A R+F +M   D V++NT+IS +A  G  + A
Sbjct: 171 KQGSCSE--TVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESA 228

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++F EM+  G   + +T  ++                                   L A
Sbjct: 229 LEIFEEMRLSGWTPDCVTIASL-----------------------------------LAA 253

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +G L  GK++H   ++        +  +L+ +Y +C  +  A  +FK     +++ W
Sbjct: 254 CASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLW 313

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N ML  Y  +    +S  LF +M  +GV PN  T   +L  C     +  G++ H   ++
Sbjct: 314 NLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIK 373

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              F   + +   L++MY++ G + +A+ + +++  +D V++TS+IAGY      + AL+
Sbjct: 374 TG-FESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALE 432

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            F++M    I PD++ + + +SAC+    + +GQ+   R+  + G    +  +  +V+LY
Sbjct: 433 TFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVY-VSGYSADVSIWNALVNLY 491

Query: 560 GRAGLLNKA 568
            R G   +A
Sbjct: 492 ARCGRSKEA 500



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 237/519 (45%), Gaps = 39/519 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            + ++  C K     QG+ +HA     G     V+   L+  Y  F   + A  +     
Sbjct: 146 LSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMP 205

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
               + +N LIS + + G    AL ++++M+      D  T  S+L AC  + D++ G+ 
Sbjct: 206 YCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQ 265

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +HS  + A       +  +L+ +Y K G +  A  +F      + V WN M+ AY     
Sbjct: 266 LHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISD 325

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             ++F LF +M   GV  N  T+  +    LRT                           
Sbjct: 326 LAKSFDLFCQMVAAGVRPNEFTYPCL----LRT--------------------------- 354

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
               C++ G + LG++IH  +++  +     V   LI MYS+   L  A  + ++   K 
Sbjct: 355 ----CTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKD 410

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W SM++GY   +  +E+   F++M   G+ P+ + +AS +  CA +  ++ G++ H 
Sbjct: 411 VVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHS 470

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            +     ++  + +WN+LV +YAR G+  EA S+F+ +  +D++T+  +++G+   G   
Sbjct: 471 RVYVSG-YSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYE 529

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL++F +M +  +K +  T V+ +SA ++   + +G KQ        G   + E    +
Sbjct: 530 EALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQG-KQIHATVIKTGCTSETEVANAL 588

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           + LYG+ G +  AK    +M        W T++ +C  H
Sbjct: 589 ISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQH 626



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 183/412 (44%), Gaps = 54/412 (13%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF--VH---------------NALVSMYG 220
           + + ++ C  +  VDF   +  C  +   W L   +H               N L+ +Y 
Sbjct: 29  FAAKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYA 88

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G V  ARR+F+++  RD VSW  M+S YA  GL +EA  L+ +M   GV       ++
Sbjct: 89  KKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSS 148

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +                                   L AC+     + G+ +H    +  
Sbjct: 149 V-----------------------------------LSACTKAALFEQGRLVHAQVYKQG 173

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                 V NALI +Y R   L  A  +F        +T+N+++S +      E +  +F 
Sbjct: 174 SCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFE 233

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           EM  SG  P+ VTIAS+L  CA + +L  GK+ H Y+L+  M  ++++   SL+++Y + 
Sbjct: 234 EMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIE-GSLLDLYVKC 292

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G + EA  +F    R + V +  ++  YG   +   +  LF +M    ++P+  T   +L
Sbjct: 293 GVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLL 352

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
             C+++G +  G+ Q   ++   G    +     ++D+Y + G L+KA+ I+
Sbjct: 353 RTCTYAGEINLGE-QIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRIL 403


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 218/685 (31%), Positives = 352/685 (51%), Gaps = 43/685 (6%)

Query: 28  QPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKV 87
           +P+  EH + +     LK +A    L  A   + R+R       VV D F +++   G+ 
Sbjct: 100 EPV--EHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM-PVVYD-FTYLLQLSGEN 155

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
             L +G+++H   I  G + N   +  +V  YA      +A  + E    R  + WN ++
Sbjct: 156 LDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVV 215

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHE 206
           + Y ++GF   A+ V  QMQ    + D+ T  SVL A  ++  +  GR +H     A  E
Sbjct: 216 AGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFE 275

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
           + + V  A++  Y K G V  AR +F  M  R                            
Sbjct: 276 YMVNVATAMLDTYFKCGSVRSARLVFKGMSSR---------------------------- 307

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
                  NV++WNT+  G  + G  +       +M  +     +V+ +  L AC+++G L
Sbjct: 308 -------NVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDL 360

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           + G+ +H        G   +V N+LI+MYS+CK +  A  +F     K+++TWN+M+ GY
Sbjct: 361 ERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGY 420

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
               C  E+  LF EM    ++P+  T+ S++   A ++  +  K  H   +R  M +++
Sbjct: 421 AQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLM-DKN 479

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           + +  +L++ +A+ G +  A+ +FDLM  R  +T+ ++I GYG  G GR AL LF EM  
Sbjct: 480 VFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQN 539

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             +KP+ +T ++V++ACSHSGLV EG   FE M   YG+ P ++H+  MVDL GRAG L+
Sbjct: 540 GSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLD 599

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
            A + I  MP  P   +   +LGAC+IH+N  +GE  A++L +  P++ GY+VL+ANMYA
Sbjct: 600 DAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYA 659

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           +   WDK+A+VRT M   G++K PGC+ V+  N    F    T++ Q++ IY  L  L +
Sbjct: 660 SASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGD 719

Query: 687 LMKDAGYVVKEEFCS--EEEIVEEI 709
            MK AGYV         EE++ E++
Sbjct: 720 EMKAAGYVPDTNSIHDVEEDVKEQL 744



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 250/515 (48%), Gaps = 46/515 (8%)

Query: 64  RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS 123
           RI   SH V     A ++  C  +K L    Q+    I  G     +   KL++ +  F+
Sbjct: 35  RIFIPSH-VYRHPSAILLELCTSLKEL---HQILPLIIKNGFYNEHLFQTKLISLFCKFN 90

Query: 124 LYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLK 183
               A  + E    +  + ++ ++  Y ++    +A+  Y++M+   +    + +  +L+
Sbjct: 91  SITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQ 150

Query: 184 ACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS 242
             GE +D+  GR +H   I    + +LF   A+V++Y K  Q++ A ++F++M +RD VS
Sbjct: 151 LSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVS 210

Query: 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           WNT+++ YA  G  + A Q+ ++MQE G +                              
Sbjct: 211 WNTVVAGYAQNGFARRAVQVVLQMQEAGQKP----------------------------- 241

Query: 303 TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLR 362
                 DS+  V  L A + + AL++G+ IHG A R  +    NV  A++  Y +C  +R
Sbjct: 242 ------DSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVR 295

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
            A ++FK  + +++++WN+M+ GY     +EE+   F +M   GVEP  V++   L  CA
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACA 355

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            + +L+ G+  H  +L        + + NSL+ MY++  +V  A SVF  +  +  VT+ 
Sbjct: 356 NLGDLERGRYVH-RLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWN 414

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           ++I GY   G    AL LF EM  + IKPD  T+V+V++A   + L V  Q ++    +I
Sbjct: 415 AMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITAL--ADLSVTRQAKWIHGLAI 472

Query: 543 YGIFPQLEHFAC--MVDLYGRAGLLNKAKEIITKM 575
             +  +   F C  ++D + + G +  A+++   M
Sbjct: 473 RTLMDK-NVFVCTALIDTHAKCGAIQTARKLFDLM 506


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 190/556 (34%), Positives = 321/556 (57%), Gaps = 6/556 (1%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-S 199
           L WN +I  +        +L +Y  M S  +  +++T+P +LK+C +      G+ +H  
Sbjct: 30  LIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQ 89

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    +  L+VH +L+SMY +  +++ A ++FD+   RD VS+  +I+ YAS+G  + A
Sbjct: 90  VLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSA 149

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF E+  +    +V++WN +  G   TG +K  LEL   M       D    V  L A
Sbjct: 150 QKLFDEIPVK----DVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSA 205

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+H G+++LG+++H       +     + NALI +YS+C ++  A  LF+  + K +I+W
Sbjct: 206 CAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISW 265

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+++ GYTH++  +E+  LF+EM RSG  PN VT+ S+LP CA +  +  G+  H YI +
Sbjct: 266 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDK 325

Query: 440 RAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R         L  SL++MYA+ G +  A  VF+ M  +   ++ ++I G+ + G    + 
Sbjct: 326 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASF 385

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LF  M K  I+PD +T V +LSACSHSG++  G+  F  MT  Y + P+LEH+ CM+DL
Sbjct: 386 DLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDL 445

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            G +GL  +A+E+I  M   P   +W +LL AC++H N  + E  A+ L++  PEN   Y
Sbjct: 446 LGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSY 505

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           +L++N+YA+ G W+ +A++R  +    ++K+PGC+ ++  +V   F+V D  + Q +EIY
Sbjct: 506 ILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIY 565

Query: 679 PLLGGLTELMKDAGYV 694
            +L  +  L+++AG+V
Sbjct: 566 GMLEEMEVLLEEAGFV 581



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/481 (26%), Positives = 215/481 (44%), Gaps = 72/481 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K K   +G+Q+H   + LG +                             
Sbjct: 66  TFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRS 125

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+T YAS     +A  L +   ++  + WN +IS Y   G Y EAL +++
Sbjct: 126 SHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFE 185

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGKFG 223
           +M    +R D  TY +VL AC     ++ GR VHS +D    + +L + NAL+ +Y K G
Sbjct: 186 EMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCG 245

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +V+ A  LF  +  +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  ++  
Sbjct: 246 EVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSV-- 303

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG- 342
                                            L AC+H+GA+ +G+ IH    +   G 
Sbjct: 304 ---------------------------------LPACAHLGAIDIGRWIHVYIDKRLKGV 330

Query: 343 -EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               ++R +LI MY++C D+  A+ +F     KS+ +WN+M+ G+     A+ S  LF  
Sbjct: 331 TNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSR 390

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M + G+EP+ +T   +L  C+    L  G+     + +       L  +  ++++   SG
Sbjct: 391 MRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSG 450

Query: 462 KVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
              EA+ + + M    D V + SL+    + G   +A    + + K  I+P++ +   +L
Sbjct: 451 LFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIK--IEPENPSSYILL 508

Query: 521 S 521
           S
Sbjct: 509 S 509



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 181/382 (47%), Gaps = 32/382 (8%)

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
           F  +  A  +F+ + E + + WNTMI  +A       +  L+V M   G+  N  T+  +
Sbjct: 11  FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFL 70

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
              C ++  F           T+   +      +G     +V    +   +    +   Y
Sbjct: 71  LKSCAKSKTF-----------TEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAY 119

Query: 342 GEYENVRN-------ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             ++   +       ALIT Y+   D+R A  LF     K +++WN+M+SGY    C +E
Sbjct: 120 KVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKE 179

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  LF EM +  V P+  T  ++L  CA   +++ G++ H ++     F+ +L + N+L+
Sbjct: 180 ALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHG-FDSNLKIVNALI 238

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           ++Y++ G+V  A  +F  +S +D +++ +LI GY      + AL LF+EM ++   P+ V
Sbjct: 239 DLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 298

Query: 515 TMVAVLSACSHSGLVVEGQ-------KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
           TM++VL AC+H G +  G+       K+ + +T+   +   L      +D+Y + G +  
Sbjct: 299 TMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSL------IDMYAKCGDIEA 352

Query: 568 AKEIITKMPYTPTSAMWATLLG 589
           A ++   M +   S+  A + G
Sbjct: 353 AHQVFNSMLHKSLSSWNAMIFG 374



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 9/248 (3%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +A E F  +       D    ++  ++  C    ++  G+Q+H+     G +
Sbjct: 171 YAETGCYKEALELFEEMMKMNVRPDE--STYVTVLSACAHSGSIELGRQVHSWVDDHGFD 228

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +V  L+  Y+       AC L +  + +  + WN LI  Y     Y EAL ++++M
Sbjct: 229 SNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 288

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSMYGK 221
                  ++ T  SVL AC  +  +D GR +H  ID       +  SL    +L+ MY K
Sbjct: 289 LRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL--RTSLIDMYAK 346

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A ++F+ ML +   SWN MI  +A  G    +F LF  M++ G+E + IT+  +
Sbjct: 347 CGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGL 406

Query: 282 AGGCLRTG 289
              C  +G
Sbjct: 407 LSACSHSG 414


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 212/631 (33%), Positives = 344/631 (54%), Gaps = 42/631 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I  CG    L  G+++H   + LG E +  +    + FY+ F   + AC L +N 
Sbjct: 144 TFPPVIRACGN---LDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNM 200

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            IR    WN +IS +  +G  AEAL V+ +M+ + +  D+ T  S+L  C ++ D+  G 
Sbjct: 201 MIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGV 260

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ++H   I    E+ LFV NAL++MY KFG++  A  +F++M  RD VSWN++++A+    
Sbjct: 261 LIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNK 320

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A  ++ +M   GV  +++T  ++A      GNF     L SR              
Sbjct: 321 KPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNF-----LSSR-------------- 361

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMTAE 373
                            IHG   R C+  ++  + NA+I MY++   +  A  +F+    
Sbjct: 362 ----------------SIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPV 405

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKE 432
           K +I+WNS+++GY+    A E+  ++  M + SG  PN  T  SIL   +++  L+ G +
Sbjct: 406 KDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMK 465

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  +++  ++ + + +   LV+MY + GK+ +A S+F  +  +  V++ ++I+ +G+ G
Sbjct: 466 AHGQLIKNFLYFD-IFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHG 524

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G  A+KLF+EM    +KPDH+T V++LSACSHSGLV EGQ  F+ M   YGI P L+H+
Sbjct: 525 YGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHY 584

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CMVDL+GRAG L KA   +  MP  P  ++W  LLGAC+IH N  +    ++ LL+   
Sbjct: 585 GCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVES 644

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           EN GYYVL++N+YA  G W+ + +VR+  RD G++K PG + ++       F   + ++ 
Sbjct: 645 ENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHP 704

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
           + +EIY  L  LT  MK  GYV    F  ++
Sbjct: 705 KCEEIYSELRNLTAKMKSIGYVPDYNFVLQD 735



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 148/540 (27%), Positives = 257/540 (47%), Gaps = 49/540 (9%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F  I   C KV      KQLHA  +  G  ++  L  KL+  YA      +A    +   
Sbjct: 46  FNRIFLYCTKVHL---AKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQ 102

Query: 137 IRYPLPWNLLISLYVRDG-FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +    WN +IS Y R G F+A   C  + + +  ++ D++T+P V++ACG + D   GR
Sbjct: 103 TKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GR 159

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH  +     E  +++  + +  Y +FG V +A  LFD M+ RD  +WN MIS +   G
Sbjct: 160 KVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNG 219

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA ++F EM+ + V ++ +T +++   C++                    LD + + 
Sbjct: 220 KVAEALEVFDEMRFKSVSMDSVTISSLLPICVQ--------------------LDDIIS- 258

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
              G   HV A+KLG E               V NALI MY++  +LR A  +F     +
Sbjct: 259 ---GVLIHVYAIKLGLEFD-----------LFVCNALINMYAKFGELRSAETIFNQMKVR 304

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            I++WNS+L+ +        +  ++ +M   GV P+ +T+ S+  + A + N    +  H
Sbjct: 305 DIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIH 364

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            ++ RR  F   + L N++++MYA+ G +  A+ VF+ +  +D +++ SLI GY   G  
Sbjct: 365 GFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLA 424

Query: 495 RVALKLFEEMN-KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
             A+ ++  M   +   P+  T V++L+A S  G + +G K   ++   +  F       
Sbjct: 425 NEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVS-T 483

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           C+VD+YG+ G L  A  +  ++P+  +S  W  ++    +H   G G  A +   E + E
Sbjct: 484 CLVDMYGKCGKLADALSLFYEVPHQ-SSVSWNAIISCHGLH---GYGLKAVKLFKEMQSE 539



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 201/458 (43%), Gaps = 54/458 (11%)

Query: 187 EMMDVDFGRVVHSC-------------IDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           E  ++DF R+   C             + +    S+F+   L++ Y   G +  AR  FD
Sbjct: 40  EKREIDFNRIFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFD 99

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVE-MQEEGVEVNVITWNTIAGGCLRTGNFK 292
           ++  +D  +WN+MISAYA  G +  A   F E +    ++ +  T+  +   C   GN  
Sbjct: 100 QIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GN-- 154

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                          LD        G   H   LKLG E               +  + I
Sbjct: 155 ---------------LDD-------GRKVHCLVLKLGFECD-----------VYIAASFI 181

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
             YSR   +  A  LF     + I TWN+M+SG+       E+  +F EM    V  + V
Sbjct: 182 HFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSV 241

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           TI+S+LP+C ++ ++  G   H Y ++  +    L + N+L+ MYA+ G++  A+++F+ 
Sbjct: 242 TISSLLPICVQLDDIISGVLIHVYAIKLGL-EFDLFVCNALINMYAKFGELRSAETIFNQ 300

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  RD V++ SL+A +    +  +AL ++ +M+   + PD +T+V++ S  +  G  +  
Sbjct: 301 MKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSS 360

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           +     +T        +     ++D+Y + G ++ A+++   +P     +  + + G  Q
Sbjct: 361 RSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQ 420

Query: 593 IH-RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
               N  I  +++ +       N G +V I   ++  G
Sbjct: 421 NGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLG 458


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 207/646 (32%), Positives = 339/646 (52%), Gaps = 39/646 (6%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           +G   +A E FT+++      D +  + A ++  C  V AL +G QLH+ AI  G+  + 
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCI--TVASLLSACASVGALHKGMQLHSHAIKAGMSADI 397

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           +L   L+  Y+  +    A      +     + WN+++  Y +    +++  +++QMQ  
Sbjct: 398 ILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQME 457

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
            +  + FTYPS+L+ C  +  +  G  +H+  I    + +++V + L+ MY K+GQ+ +A
Sbjct: 458 GMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALA 517

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            R+  ++ E D                                   V++W  +  G ++ 
Sbjct: 518 LRILRRLPEDD-----------------------------------VVSWTAMIAGYVQH 542

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
             F   L+L   M  +    D++     + AC+ + AL+ G++IH  +    +G   ++ 
Sbjct: 543 DMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           NALI++Y+RC  ++ AY+ F+   +K+ I+WNS++SG       EE+  +F  M R+  E
Sbjct: 603 NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            N  T  S +   A +AN++ G++ H  +L+   ++    + NSL+ +YA+SG + +A  
Sbjct: 663 VNMFTYGSAISAAASLANIKQGQQIHSMVLKTG-YDSEREVSNSLISLYAKSGSISDAWR 721

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
            F+ MS R+ +++ ++I GY   G G  AL+LFEEM    I P+HVT V VLSACSH GL
Sbjct: 722 EFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGL 781

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           V EG   FE M  I+ + P+ EH+ C+VDL GRAG L++A E I +MP    + +W TLL
Sbjct: 782 VKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLL 841

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
            AC IH+N  IGE AA  LLE  PE+S  YVLI+N+YA +  W      R  M+D GV+K
Sbjct: 842 SACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKK 901

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            PG +W++  N    F   D  +    +IY  +G L     + GYV
Sbjct: 902 EPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYV 947



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 230/490 (46%), Gaps = 44/490 (8%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           C G   A    KQ+H+     G + +P++   L+  Y+      +A  +     ++  + 
Sbjct: 169 CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           W  +IS   ++G   EA+ ++  M +  I    +   SVL A  ++   + G  +H  + 
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVI 288

Query: 203 ACHEWSL----FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
              +W      +V N LV++Y +  ++  A R+F  M  RD VS+N++IS    +G    
Sbjct: 289 ---KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDR 345

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A +LF +MQ + ++ + IT                                 VA++  L 
Sbjct: 346 ALELFTKMQRDCLKPDCIT---------------------------------VASL--LS 370

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ VGAL  G ++H  A++        +  +L+ +YS+C D+  A+  F  T  ++I+ 
Sbjct: 371 ACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVL 430

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN ML  Y  LD   +S  +FR+M   G+ PN  T  SIL  C  +  L  G++ H +++
Sbjct: 431 WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   F  ++ + + L++MYA+ G++  A  +   +   D V++T++IAGY        AL
Sbjct: 491 KTG-FQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEAL 549

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LFEEM    I+ D++   + +SAC+    + +GQ Q    +   G    L     ++ L
Sbjct: 550 QLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQ-QIHAQSYAAGFGADLSINNALISL 608

Query: 559 YGRAGLLNKA 568
           Y R G + +A
Sbjct: 609 YARCGRIQEA 618



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 223/484 (46%), Gaps = 38/484 (7%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           K++    G+QLH   I  G      +   LV  Y+      +A  +    N R  + +N 
Sbjct: 273 KIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           LIS  V+ GF   AL ++ +MQ   ++ D  T  S+L AC  +  +  G  +HS  I A 
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
               + +  +L+ +Y K   V+ A + F      + V WN M+ AY       ++F++F 
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFR 452

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           +MQ EG+  N  T+ +I    LRT                               C+ +G
Sbjct: 453 QMQMEGMIPNQFTYPSI----LRT-------------------------------CTSLG 477

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           AL LG++IH   ++  +     V + LI MY++   L  A  + +   E  +++W +M++
Sbjct: 478 ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY   D   E+  LF EM   G++ + +  AS +  CA +  L+ G++ H      A F 
Sbjct: 538 GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSY-AAGFG 596

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             L + N+L+ +YAR G++ EA   F+ +  ++ +++ SL++G    G    AL++F  M
Sbjct: 597 ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            + + + +  T  + +SA +    + +GQ Q   M    G   + E    ++ LY ++G 
Sbjct: 657 LRTEAEVNMFTYGSAISAAASLANIKQGQ-QIHSMVLKTGYDSEREVSNSLISLYAKSGS 715

Query: 565 LNKA 568
           ++ A
Sbjct: 716 ISDA 719



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/513 (22%), Positives = 228/513 (44%), Gaps = 43/513 (8%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C    +L +  +LH      G +  P+L+  LV  Y      + A  + + ++ R    W
Sbjct: 68  CLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSW 127

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC-GEMMDVDFGRVVHS-CI 201
           N +I ++V      +  C++++M +  I  + +T+  VLKAC G  +  ++ + VHS   
Sbjct: 128 NKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTF 187

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               + S  V N L+ +Y K G ++ A+++F+ +  +D V+W  MIS  +  GL      
Sbjct: 188 YYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL------ 241

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                +EE +                         L   M   E +         L A +
Sbjct: 242 -----EEEAIL------------------------LFCDMHASEIFPTPYVLSSVLSAST 272

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            +   +LG+++H   ++  +     V N L+ +YSR + L  A  +F     +  +++NS
Sbjct: 273 KIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++SG      ++ +  LF +M R  ++P+ +T+AS+L  CA V  L  G + H + ++  
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           M +  ++L  SL+++Y++   V  A   F      + V +  ++  YG       + ++F
Sbjct: 393 M-SADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIF 451

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC--MVDLY 559
            +M    + P+  T  ++L  C+  G +  G+   +  T +     QL  + C  ++D+Y
Sbjct: 452 RQMQMEGMIPNQFTYPSILRTCTSLGALYLGE---QIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            + G L  A  I+ ++P     +  A + G  Q
Sbjct: 509 AKYGQLALALRILRRLPEDDVVSWTAMIAGYVQ 541



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 68/176 (38%), Gaps = 1/176 (0%)

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           L   M   GV  NY     +L  C    +L      HC I +     E LL+ +SLV+ Y
Sbjct: 45  LMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLI-DSLVDNY 103

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
            R G    A  VFD  S R   ++  +I  +  Q        LF  M    I P+  T  
Sbjct: 104 FRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFA 163

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
            VL AC    +     KQ    T  YG          ++DLY + G +  AK++  
Sbjct: 164 GVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 203/590 (34%), Positives = 324/590 (54%), Gaps = 14/590 (2%)

Query: 113 PKLVTFYASFSLYNNACFLVENSNI------RYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           P L T+ A  S   +A  L +  ++      R  + +N +I+ +   G +A A+ +Y  +
Sbjct: 70  PNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTL 129

Query: 167 --QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFG 223
                 +R    T  +++ A   + D   GR  H   +      + FV + LV MY K G
Sbjct: 130 LRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMG 189

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +  A+R+FD+M  ++ V +NTMI+      + +EA +LF  M +     + ITW T+  
Sbjct: 190 LIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDR----DCITWTTMVT 245

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G  + G     L    RMR Q   +D       L AC  + AL+ GK+IH   +R  Y +
Sbjct: 246 GFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDD 305

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V +AL+ MYS+C+ ++ A   F+  + K+II+W +++ GY    C+EE+  +F EM 
Sbjct: 306 NVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQ 365

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           R G++P+  T+ S++  CA +A+L+ G +FHC  L   + + ++ + N+LV +Y + G +
Sbjct: 366 RDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMH-YITVSNALVTLYGKCGSI 424

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A  +FD M   D+V++T+L+ GY   G  +  + LFE+M    +KPD VT + VLSAC
Sbjct: 425 EDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSAC 484

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           S +G V +G   F  M   +GI P  +H+ CM+DLY R+G L +A+E I +MP  P +  
Sbjct: 485 SRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIG 544

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W TLL AC++  +  IG+WAAE LLE  P+N   YVL+ +M+A  G W+++A++R  MRD
Sbjct: 545 WGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRD 604

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
             V+K PGC+W+   N    F  DD S+  ++ IY  L  L   M + GY
Sbjct: 605 RQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGY 654



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 202/412 (49%), Gaps = 31/412 (7%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM-QEEGV 271
           N L++ YGK G+   ARR+FD     +  ++N ++S  A   L  +   LF  M Q + V
Sbjct: 45  NHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTV 104

Query: 272 EVNVITWNTIAGGCLRTGN--FKGVLELLSRMRTQETYLDSV---ATVIG---LGACSHV 323
             N +      GG        +  +L   S +R     + ++   A+ +G   LG   H 
Sbjct: 105 SYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHC 164

Query: 324 GALKLGKEIH---GSAVRGCY------GEYENV-----------RNALITMYSRCKDLRH 363
             L+LG  ++   GS + G Y      G+ + V            N +IT   RCK +  
Sbjct: 165 QILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEE 224

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           A  LF++  ++  ITW +M++G+T      ++   FR M   G+  +  T  SIL  C  
Sbjct: 225 ARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           ++ L+ GK+ H YI+ R  +++++ + ++LV+MY++   +  A++ F  MS ++ +++T+
Sbjct: 285 LSALEQGKQIHAYII-RTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTA 343

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           LI GYG  G    A+++F EM ++ I PD  T+ +V+S+C++   + EG  QF  +  + 
Sbjct: 344 LIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEG-AQFHCLALVS 402

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           G+   +     +V LYG+ G +  A  +  +M +    +  A + G  Q  R
Sbjct: 403 GLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGR 454



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/486 (22%), Positives = 218/486 (44%), Gaps = 80/486 (16%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F+G G  ++A   +  +    +S      + + ++     +   A G+Q H   + LG  
Sbjct: 113 FSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFG 172

Query: 107 KNPVLVPKLVTFYASFSLYNNA------------------------CFLVENS------- 135
            N  +   LV  YA   L  +A                        C +VE +       
Sbjct: 173 VNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVM 232

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +++ + ++G  ++AL  +++M+ + I  D +T+ S+L ACG +  ++ G+
Sbjct: 233 TDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGK 292

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+ I   H + ++FV +ALV MY K   +  A   F +M  ++ +SW  +I  Y   G
Sbjct: 293 QIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNG 352

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA ++F EMQ +G++ +  T  ++                                 
Sbjct: 353 CSEEAVRVFSEMQRDGIDPDDFTLGSV--------------------------------- 379

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + +C+++ +L+ G + H  A+      Y  V NAL+T+Y +C  +  A+ LF      
Sbjct: 380 --ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFH 437

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG-KEF 433
             ++W ++++GY     A+E+  LF +M    V+P+ VT   +L  C+R   ++ G   F
Sbjct: 438 DQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYF 497

Query: 434 HCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAG 487
           H      +M  +H ++     +  ++++Y+RSG++ EA+     M    D + + +L++ 
Sbjct: 498 H------SMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSA 551

Query: 488 YGIQGE 493
             ++G+
Sbjct: 552 CRLRGD 557


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  364 bits (935), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 228/698 (32%), Positives = 350/698 (50%), Gaps = 88/698 (12%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           D +A ++  C      + G+ +HA A+  GL  +  L   L+ +YAS  + +  CF    
Sbjct: 210 DHYARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGV-SRGCFREAR 268

Query: 135 ---SNIRYP----LPWNLLISLYVRDGFYAEALCVYKQMQSRR-------IRGDN----- 175
               +I Y       WN L+SLY + G   +A  V+ +M  R        I G N     
Sbjct: 269 CLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRF 328

Query: 176 -------------------FTYPSVLKACGEMMDVDFGRVVHSCI-----DACHEWSLFV 211
                              FT  +VL +C  M     GR VH  +      +C    + V
Sbjct: 329 WDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSC----VPV 384

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N+++ MYGK G  + AR +F++M  R   SWN M+S Y  +G      +L V M E  V
Sbjct: 385 ANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQG----RMELAVSMFENMV 440

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGK 330
           E ++++WNTI  G  + G     L+  SRM +  +      TV   L AC+++  LK+GK
Sbjct: 441 ERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGK 500

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRC-------------------------------- 358
           ++H   +R        + NALI+ Y++                                 
Sbjct: 501 QMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVK 560

Query: 359 -KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
             D + A  +F +   + +I W +M+ GY      +E+  LFR M   G EPN  T+A++
Sbjct: 561 LGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAV 620

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RR 476
           L  CA +A L +GK+ HC  + R++  + + + N+++ +YARSG VP A+ VFD +  R+
Sbjct: 621 LSACASLAYLDYGKQIHCKAI-RSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRK 679

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           + +T+TS+I      G G  A+ LFEEM +  +KPDH+T V VLSAC+H+G V +G++ +
Sbjct: 680 ETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYY 739

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           E+M + +GI PQ+ H+ACMVDL+ RAGLL +A E I +MP  P + +W +LL AC++ +N
Sbjct: 740 EQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKN 799

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             + E AA KLL   P NSG Y  +AN+Y+A G W+  A++    +D GV+K  G +W  
Sbjct: 800 ADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTH 859

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
                  F  DD  + Q   IY     + E +K AG+V
Sbjct: 860 VRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFV 897



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 207/476 (43%), Gaps = 58/476 (12%)

Query: 71  DVVLDSFA-------HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS 123
           D+V + FA       +++  C  ++A   G+++H   + LGL     +   ++  Y    
Sbjct: 337 DMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCG 396

Query: 124 LYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI------------ 171
               A  + E   +R    WN+++SLY   G    A+ +++ M  R I            
Sbjct: 397 DAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQ 456

Query: 172 --------------------RGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLF 210
                                 D FT  SVL AC  +  +  G+ +HS I       S  
Sbjct: 457 NGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQ 516

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERD--AVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           + NAL+S Y K G V+ ARR+ D+ +  D   +S+  ++  Y   G  K+A ++F  M  
Sbjct: 517 IMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNN 576

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                +VI W  +  G  + G     +EL   M       +S      L AC+ +  L  
Sbjct: 577 R----DVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDY 632

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYT 387
           GK+IH  A+R    +  +V NA+IT+Y+R   +  A  +F ++   K  ITW SM+    
Sbjct: 633 GKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMA 692

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                E++  LF EM R GV+P+++T   +L  CA    +  GK ++       M NEH 
Sbjct: 693 QHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYY-----EQMQNEHG 747

Query: 448 LL-----WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVA 497
           ++     +  +V+++AR+G + EA      M    D V + SL+A   ++    +A
Sbjct: 748 IVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLA 803



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 128/269 (47%), Gaps = 36/269 (13%)

Query: 56  AFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           A + F+R+ ++A+S +    +   ++  C  ++ L  GKQ+H+  +  G+  +  ++  L
Sbjct: 463 ALKFFSRM-LSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNAL 521

Query: 116 VTFYASFSLYNNACFLVENS---------------------------------NIRYPLP 142
           ++ YA       A  +++ +                                 N R  + 
Sbjct: 522 ISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIA 581

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCI 201
           W  +I  Y ++G   EA+ +++ M       ++ T  +VL AC  +  +D+G+ +H   I
Sbjct: 582 WTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAI 641

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGLWKEAF 260
            +  E S+ V NA++++Y + G V +ARR+FD++  R + ++W +MI A A  GL ++A 
Sbjct: 642 RSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAV 701

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            LF EM   GV+ + IT+  +   C   G
Sbjct: 702 VLFEEMVRVGVKPDHITYVGVLSACAHAG 730


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 207/646 (32%), Positives = 339/646 (52%), Gaps = 39/646 (6%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           +G   +A E FT+++      D +  + A ++  C  V AL +G QLH+ AI  G+  + 
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCI--TVASLLSACASVGALHKGMQLHSHAIKAGMSADI 397

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           +L   L+  Y+  +    A      +     + WN+++  Y +    +++  +++QMQ  
Sbjct: 398 ILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQME 457

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
            +  + FTYPS+L+ C  +  +  G  +H+  I    + +++V + L+ MY K+GQ+ +A
Sbjct: 458 GMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALA 517

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            R+  ++ E D                                   V++W  +  G ++ 
Sbjct: 518 LRILRRLPEDD-----------------------------------VVSWTAMIAGYVQH 542

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
             F   L+L   M  +    D++     + AC+ + AL+ G++IH  +    +G   ++ 
Sbjct: 543 DMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           NALI++Y+RC  ++ AY+ F+   +K+ I+WNS++SG       EE+  +F  M R+  E
Sbjct: 603 NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            N  T  S +   A +AN++ G++ H  +L+   ++    + NSL+ +YA+SG + +A  
Sbjct: 663 VNMFTYGSAISAAASLANIKQGQQIHSMVLKTG-YDSEREVSNSLISLYAKSGSISDAWR 721

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
            F+ MS R+ +++ ++I GY   G G  AL+LFEEM    I P+HVT V VLSACSH GL
Sbjct: 722 EFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGL 781

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           V EG   FE M  I+ + P+ EH+ C+VDL GRAG L++A E I +MP    + +W TLL
Sbjct: 782 VKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLL 841

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
            AC IH+N  IGE AA  LLE  PE+S  YVLI+N+YA +  W      R  M+D GV+K
Sbjct: 842 SACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKK 901

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            PG +W++  N    F   D  +    +IY  +G L     + GYV
Sbjct: 902 EPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYV 947



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 230/490 (46%), Gaps = 44/490 (8%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           C G   A    KQ+H+     G + +P++   L+  Y+      +A  +     ++  + 
Sbjct: 169 CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           W  +IS   ++G   EA+ ++  M +  I    +   SVL A  ++   + G  +H  + 
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVI 288

Query: 203 ACHEWSL----FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
              +W      +V N LV++Y +  ++  A R+F  M  RD VS+N++IS    +G    
Sbjct: 289 ---KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDR 345

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A +LF +MQ + ++ + IT                                 VA++  L 
Sbjct: 346 ALELFTKMQRDCLKPDCIT---------------------------------VASL--LS 370

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ VGAL  G ++H  A++        +  +L+ +YS+C D+  A+  F  T  ++I+ 
Sbjct: 371 ACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVL 430

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN ML  Y  LD   +S  +FR+M   G+ PN  T  SIL  C  +  L  G++ H +++
Sbjct: 431 WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   F  ++ + + L++MYA+ G++  A  +   +   D V++T++IAGY        AL
Sbjct: 491 KTG-FQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEAL 549

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LFEEM    I+ D++   + +SAC+    + +GQ Q    +   G    L     ++ L
Sbjct: 550 QLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQ-QIHAQSYAAGFGADLSINNALISL 608

Query: 559 YGRAGLLNKA 568
           Y R G + +A
Sbjct: 609 YARCGRIQEA 618



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 223/484 (46%), Gaps = 38/484 (7%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           K++    G+QLH   I  G      +   LV  Y+      +A  +    N R  + +N 
Sbjct: 273 KIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           LIS  V+ GF   AL ++ +MQ   ++ D  T  S+L AC  +  +  G  +HS  I A 
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
               + +  +L+ +Y K   V+ A + F      + V WN M+ AY       ++F++F 
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFR 452

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           +MQ EG+  N  T+ +I    LRT                               C+ +G
Sbjct: 453 QMQMEGMIPNQFTYPSI----LRT-------------------------------CTSLG 477

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           AL LG++IH   ++  +     V + LI MY++   L  A  + +   E  +++W +M++
Sbjct: 478 ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY   D   E+  LF EM   G++ + +  AS +  CA +  L+ G++ H      A F 
Sbjct: 538 GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSY-AAGFG 596

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             L + N+L+ +YAR G++ EA   F+ +  ++ +++ SL++G    G    AL++F  M
Sbjct: 597 ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            + + + +  T  + +SA +    + +GQ Q   M    G   + E    ++ LY ++G 
Sbjct: 657 LRTEAEVNMFTYGSAISAAASLANIKQGQ-QIHSMVLKTGYDSEREVSNSLISLYAKSGS 715

Query: 565 LNKA 568
           ++ A
Sbjct: 716 ISDA 719



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/513 (22%), Positives = 228/513 (44%), Gaps = 43/513 (8%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C    +L +  +LH      G +  P+L+  LV  Y      + A  + + ++ R    W
Sbjct: 68  CLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSW 127

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC-GEMMDVDFGRVVHS-CI 201
           N +I ++V      +  C++++M +  I  + +T+  VLKAC G  +  ++ + VHS   
Sbjct: 128 NKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTF 187

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               + S  V N L+ +Y K G ++ A+++F+ +  +D V+W  MIS  +  GL      
Sbjct: 188 YYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL------ 241

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                +EE +                         L   M   E +         L A +
Sbjct: 242 -----EEEAIL------------------------LFCDMHASEIFPTPYVLSSVLSAST 272

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            +   +LG+++H   ++  +     V N L+ +YSR + L  A  +F     +  +++NS
Sbjct: 273 KIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++SG      ++ +  LF +M R  ++P+ +T+AS+L  CA V  L  G + H + ++  
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           M +  ++L  SL+++Y++   V  A   F      + V +  ++  YG       + ++F
Sbjct: 393 M-SADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIF 451

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC--MVDLY 559
            +M    + P+  T  ++L  C+  G +  G+   +  T +     QL  + C  ++D+Y
Sbjct: 452 RQMQMEGMIPNQFTYPSILRTCTSLGALYLGE---QIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            + G L  A  I+ ++P     +  A + G  Q
Sbjct: 509 AKYGQLALALRILRRLPEDDVVSWTAMIAGYVQ 541



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 68/176 (38%), Gaps = 1/176 (0%)

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           L   M   GV  NY     +L  C    +L      HC I +     E LL+ +SLV+ Y
Sbjct: 45  LMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLI-DSLVDNY 103

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
            R G    A  VFD  S R   ++  +I  +  Q        LF  M    I P+  T  
Sbjct: 104 FRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFA 163

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
            VL AC    +     KQ    T  YG          ++DLY + G +  AK++  
Sbjct: 164 GVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/618 (32%), Positives = 322/618 (52%), Gaps = 39/618 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  CG+V     GK++H   +  GL+++  +   L+  Y   +    A  + +    R 
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W+ +I    R+  +  AL + ++M   ++R       S++    +  ++  G+ +H+
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 219

Query: 200 CI---DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
            +          +    AL+ MY K G + +AR+LF+ + ++  VSW  MI+        
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRL 279

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           +E  +LF+ MQEE +  N IT                +L L+                  
Sbjct: 280 EEGTKLFIRMQEENIFPNEIT----------------MLSLIVE---------------- 307

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
              C   GAL+LGK++H   +R  +     +  AL+ MY +C D+R+A  LF  T  + +
Sbjct: 308 ---CGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDV 364

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           + W +MLS Y   +C +++  LF +M  SGV P  VTI S+L LCA    L  GK  H Y
Sbjct: 365 MIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSY 424

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           I  +       +L  +LV+MYA+ G +  A  +F     RD   + ++I G+ + G G  
Sbjct: 425 I-DKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEE 483

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           AL +F EM +  +KP+ +T + +L ACSH+GLV EG+K FE+M   +G+ PQ+EH+ CMV
Sbjct: 484 ALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMV 543

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GRAGLL++A E+I  MP  P + +W  L+ AC++H+N  +GE AA +LLE  PEN G
Sbjct: 544 DLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCG 603

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
           Y VL++N+YAA   W   A VR  M+ +G++K PG + ++       FL+ D S+ Q + 
Sbjct: 604 YNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRR 663

Query: 677 IYPLLGGLTELMKDAGYV 694
           I  +L  +   + +AGYV
Sbjct: 664 INEMLAEMRRKLNEAGYV 681



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 208/445 (46%), Gaps = 58/445 (13%)

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           NF  PSVLKACG++     G+ +H   +    +  +FV NAL+ MYG+   V+ AR +FD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           KM+ERD VSW+TMI + +                                   R   F  
Sbjct: 154 KMMERDVVSWSTMIRSLS-----------------------------------RNKEFDM 178

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNAL 351
            LEL+  M   +     VA V  +   +    +++GK +H   +R    E+  V    AL
Sbjct: 179 ALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTAL 238

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           + MY++C  L  A  LF    +K++++W +M++G    +  EE   LF  M    + PN 
Sbjct: 239 LDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNE 298

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           +T+ S++  C     LQ GK+ H YILR   F+  L L  +LV+MY +   +  A+++FD
Sbjct: 299 ITMLSLIVECGFTGALQLGKQLHAYILRNG-FSVSLALATALVDMYGKCSDIRNARALFD 357

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
               RD + +T++++ Y        A  LF++M  + ++P  VT+V++LS C+ +G +  
Sbjct: 358 STQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDL 417

Query: 532 GQ-------KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           G+       K+   +  I            +VD+Y + G +N A  +  +   +    MW
Sbjct: 418 GKWVHSYIDKERVEVDCILN--------TALVDMYAKCGDINAAGRLFIE-AISRDICMW 468

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLE 609
             ++    +H   G GE A +   E
Sbjct: 469 NAIITGFAMH---GYGEEALDIFAE 490


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 197/529 (37%), Positives = 296/529 (55%), Gaps = 16/529 (3%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL------FVHNALVSMYGKFGQ 224
           +R    T   V+     + D   GR VH     C    L      F  + LV MY K G 
Sbjct: 141 VRPSRITMSGVVMVASALGDRALGRQVH-----CQILRLGFGAYAFTGSPLVDMYAKVGP 195

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  ARR+FD+M  ++ V  NTMI+      +  EA  LF  ++E     + ITW T+  G
Sbjct: 196 IGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEER----DSITWTTMVTG 251

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
             + G     L++  RMR +   +D       L AC  + AL+ GK+IH    R CY + 
Sbjct: 252 LTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDN 311

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V +AL+ MYS+C+ +R A  +F+    K+II+W +M+ GY    C EE+  +F EM R
Sbjct: 312 VFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQR 371

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G++P+  T+ S++  CA +A+L+ G +FHC  L   +   ++ + N+LV +Y + G + 
Sbjct: 372 DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL-RPYVTVSNALVTLYGKCGSIE 430

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           +A  +FD MS  D+V++T+L+ GY   G+ +  + LFE+M    +KPD VT + VLSACS
Sbjct: 431 DAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACS 490

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
            SGLV +G+  F  M   + I P  +H+ CM+DLY R+G L +A+E I +MP  P +  W
Sbjct: 491 RSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGW 550

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
           ATLL AC++  +  IG+WAAE LL+  P+N   YVL+ +M+A+ G W+ +AK+R  MRD 
Sbjct: 551 ATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDR 610

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
            V+K PGC+W+   N    F  DD S+  ++ IY  L  L   M + GY
Sbjct: 611 QVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGY 659



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 208/421 (49%), Gaps = 39/421 (9%)

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           H    ++ N L++ Y   G +  ARR+FD M  R+ V+ N+++SA A  GL ++  +LF 
Sbjct: 42  HPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFT 101

Query: 265 EM-QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSH 322
            + Q + V  N +    +AG      + +     ++ +R +     S  T+ G +   S 
Sbjct: 102 SLPQRDAVSYNAL----LAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASA 157

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYS-------------------------- 356
           +G   LG+++H   +R  +G Y    + L+ MY+                          
Sbjct: 158 LGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTM 217

Query: 357 -----RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
                RCK +  A  LF+   E+  ITW +M++G T      E+  +FR M   GV  + 
Sbjct: 218 ITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQ 277

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            T  SIL  C  +A L+ GK+ H YI  R  + +++ + ++LV+MY++   V  A++VF 
Sbjct: 278 YTFGSILTACGALAALEEGKQIHAYIT-RTCYEDNVFVGSALVDMYSKCRSVRLAEAVFR 336

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            M  ++ +++T++I GYG  G G  A+++F EM ++ IKPD  T+ +V+S+C++   + E
Sbjct: 337 RMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEE 396

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G  QF  +  + G+ P +     +V LYG+ G +  A  +  +M +    +  A ++G  
Sbjct: 397 G-AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYA 455

Query: 592 Q 592
           Q
Sbjct: 456 Q 456



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 195/395 (49%), Gaps = 49/395 (12%)

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN V+   ++T      +   A  L E    R  + W  +++   ++G  +EAL V+++M
Sbjct: 209 KNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRM 268

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQV 225
           ++  +  D +T+ S+L ACG +  ++ G+ +H+ I   C+E ++FV +ALV MY K   V
Sbjct: 269 RAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSV 328

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            +A  +F +M+ ++ +SW  MI  Y   G  +EA ++F EMQ +G++ +  T  ++    
Sbjct: 329 RLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSV---- 384

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          + +C+++ +L+ G + H  A+      Y 
Sbjct: 385 -------------------------------ISSCANLASLEEGAQFHCLALVSGLRPYV 413

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NAL+T+Y +C  +  A+ LF   +    ++W +++ GY     A+E+  LF +M   
Sbjct: 414 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSK 473

Query: 406 GVEPNYVTIASILPLCARVANLQHGKE-FHCYILRRAMFNEHLLL-----WNSLVEMYAR 459
           GV+P+ VT   +L  C+R   +  G+  FH      +M  +H ++     +  ++++Y+R
Sbjct: 474 GVKPDGVTFIGVLSACSRSGLVDKGRSYFH------SMQQDHDIVPLDDHYTCMIDLYSR 527

Query: 460 SGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGE 493
           SG + +A+     M R  D   + +L++   ++G+
Sbjct: 528 SGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGD 562



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 119/238 (50%), Gaps = 5/238 (2%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           S+A + F R+R      D    +F  I+  CG + AL +GKQ+HA       E N  +  
Sbjct: 259 SEALDVFRRMRAEGVGIDQY--TFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGS 316

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            LV  Y+       A  +      +  + W  +I  Y ++G   EA+ V+ +MQ   I+ 
Sbjct: 317 ALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKP 376

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
           D+FT  SV+ +C  +  ++ G   H  + +     + + V NALV++YGK G ++ A RL
Sbjct: 377 DDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPY-VTVSNALVTLYGKCGSIEDAHRL 435

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           FD+M   D VSW  ++  YA  G  KE   LF +M  +GV+ + +T+  +   C R+G
Sbjct: 436 FDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSG 493



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 3/182 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C  + +L +G Q H  A+  GL     +   LVT Y       +A  L +  
Sbjct: 380 TLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEM 439

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           +    + W  L+  Y + G   E + ++++M S+ ++ D  T+  VL AC     VD GR
Sbjct: 440 SFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGR 499

Query: 196 VVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYAS 252
                +   H+       +  ++ +Y + G +  A     +M    DA  W T++SA   
Sbjct: 500 SYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRL 559

Query: 253 KG 254
           +G
Sbjct: 560 RG 561



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 34/175 (19%)

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-------------------- 473
           H  ILR         L N+L+  YA SG +P A+ VFD M                    
Sbjct: 33  HALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGL 92

Query: 474 -----------SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ--IKPDHVTMVAVL 520
                       +RD V+Y +L+AG+   G    A   +  + +++  ++P  +TM  V+
Sbjct: 93  VRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVV 152

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
              S  G    G++   ++  + G        + +VD+Y + G +  A+ +  +M
Sbjct: 153 MVASALGDRALGRQVHCQILRL-GFGAYAFTGSPLVDMYAKVGPIGDARRVFDEM 206


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 198/600 (33%), Positives = 327/600 (54%), Gaps = 37/600 (6%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LHAC   LG   +  +   L+  Y+     + A  + ++   +  + W  +++ Y  + F
Sbjct: 158 LHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCF 217

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNA 214
           Y E+L ++ QM+    + +NFT    LK+C  +   + G+ VH C +  C++  LFV  A
Sbjct: 218 YEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+ +Y K G++  A+RLF++M + D + W+ MI+ YA     KEA  LF+ M++  V  N
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
             T+ ++                                   L AC+   +L LGK+IH 
Sbjct: 338 NFTFASV-----------------------------------LQACASSVSLDLGKQIHS 362

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             ++        V NA++ +Y++C ++ ++  LF+   +++ +TWN+++ GY  L   E 
Sbjct: 363 CVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGER 422

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  LF  M    ++P  VT +S+L   A +A L+ G + H   + + M+N+  ++ NSL+
Sbjct: 423 AMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTI-KTMYNKDTVVANSLI 481

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MYA+ G++ +A+  FD M++RDEV++ ++I GY + G    AL LF+ M     KP+ +
Sbjct: 482 DMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKL 541

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           T V VLSACS++GL+ +GQ  FE M+  Y I P +EH+ CMV L GR G  ++A ++I +
Sbjct: 542 TFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGE 601

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           + Y P+  +W  LLGAC IH+   +G   A+ +LE  P +   +VL++NMYA  G WD +
Sbjct: 602 IAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNV 661

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           A VR  M+   VRK PG +WV+   V   F V DTS+   + I  +L  L +  +DAGYV
Sbjct: 662 AFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYV 721



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 231/485 (47%), Gaps = 40/485 (8%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           GK LH   +  G   +      L+ FY   +   +A  L +       + +  L   Y R
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFV 211
           D  + +AL    ++       + F + ++LK    M        +H+C+    H    FV
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
             AL+  Y   G VDVAR +FD +  +D VSW  M++ YA    ++E+ QLF +M+  G 
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
           + N  T   I+G                                 L +C  + A  +GK 
Sbjct: 234 KPNNFT---ISGA--------------------------------LKSCLGLEAFNVGKS 258

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +HG A++GCY     V  AL+ +Y++  ++  A  LF+   +  +I W+ M++ Y   D 
Sbjct: 259 VHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDR 318

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
           ++E+  LF  M ++ V PN  T AS+L  CA   +L  GK+ H  +L+  + N ++ + N
Sbjct: 319 SKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGL-NSNVFVSN 377

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +++++YA+ G++  +  +F+ +  R++VT+ ++I GY   G+G  A+ LF  M ++ ++P
Sbjct: 378 AIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQP 437

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKE 570
             VT  +VL A S S   +E   Q   +T I  ++ +    A  ++D+Y + G +N A+ 
Sbjct: 438 TEVTYSSVLRA-SASLAALEPGLQIHSLT-IKTMYNKDTVVANSLIDMYAKCGRINDARL 495

Query: 571 IITKM 575
              KM
Sbjct: 496 TFDKM 500



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 170/349 (48%), Gaps = 36/349 (10%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  ++A   GK +H CA+    + +  +   L+  YA      +A  L E       +PW
Sbjct: 247 CLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPW 306

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-D 202
           +L+I+ Y +     EAL ++ +M+   +  +NFT+ SVL+AC   + +D G+ +HSC+  
Sbjct: 307 SLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLK 366

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                ++FV NA++ +Y K G+++ + +LF+++ +R+ V+WNT+I  Y   G  + A  L
Sbjct: 367 FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNL 426

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M E  ++   +T++++                                   L A + 
Sbjct: 427 FTHMLEHDMQPTEVTYSSV-----------------------------------LRASAS 451

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           + AL+ G +IH   ++  Y +   V N+LI MY++C  +  A + F    ++  ++WN+M
Sbjct: 452 LAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAM 511

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           + GY+    + E+  LF  M  +  +PN +T   +L  C+    L  G+
Sbjct: 512 ICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQ 560



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 118/244 (48%), Gaps = 3/244 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A      +A + F R+R T+   +    +FA ++  C    +L  GKQ+H+C +  GL 
Sbjct: 313 YAQSDRSKEALDLFLRMRQTSVVPNNF--TFASVLQACASSVSLDLGKQIHSCVLKFGLN 370

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   ++  YA      N+  L E    R  + WN +I  YV+ G    A+ ++  M
Sbjct: 371 SNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHM 430

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               ++    TY SVL+A   +  ++ G  +HS  I   +     V N+L+ MY K G++
Sbjct: 431 LEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRI 490

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + AR  FDKM +RD VSWN MI  Y+  G+  EA  LF  MQ    + N +T+  +   C
Sbjct: 491 NDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSAC 550

Query: 286 LRTG 289
              G
Sbjct: 551 SNAG 554



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 174/381 (45%), Gaps = 38/381 (9%)

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            LF  N L++ Y +   +  A +LFD+M + + +S+ T+   Y+    + +A    + + 
Sbjct: 69  DLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIF 128

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           +EG EVN   + T+             L+LL  M       D       L AC +    K
Sbjct: 129 KEGHEVNPFVFTTL-------------LKLLVSM-------DLAHLCWTLHACVY----K 164

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
           LG   H  A  G          ALI  YS   ++  A  +F     K +++W  M++ Y 
Sbjct: 165 LGH--HADAFVG---------TALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYA 213

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                EES  LF +M   G +PN  TI+  L  C  +     GK  H   L +  ++  L
Sbjct: 214 ENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCAL-KGCYDHDL 272

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            +  +L+E+YA+SG++ +A+ +F+ M + D + ++ +IA Y      + AL LF  M + 
Sbjct: 273 FVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQT 332

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            + P++ T  +VL AC+ S + ++  KQ       +G+   +     ++D+Y + G +  
Sbjct: 333 SVVPNNFTFASVLQACA-SSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIEN 391

Query: 568 AKEIITKMPYTPTSAMWATLL 588
           + ++  ++P       W T++
Sbjct: 392 SMKLFEELP-DRNDVTWNTII 411


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 216/633 (34%), Positives = 341/633 (53%), Gaps = 41/633 (6%)

Query: 76   SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
            +++ I+  C  +K L  G QLH+  I      N  +   LV  YA      +A    E  
Sbjct: 430  TYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELI 489

Query: 136  NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
              R  + WN++I  YV++    EA  ++++M    I  D  +  S+L AC  +  ++ G+
Sbjct: 490  RNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGK 549

Query: 196  VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
             VH   +    E  L+  ++L+ MY K G +D A ++   M ER  VS N +I+ YA   
Sbjct: 550  QVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQIN 609

Query: 255  LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
            L ++A  LF +M  EG+    IT+ ++                                 
Sbjct: 610  L-EQAVNLFRDMLVEGINSTEITFASL--------------------------------- 635

Query: 315  IGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILF-KMTA 372
              L AC     L LG++IH   ++ G   + E +  +L+ MY        A +LF + + 
Sbjct: 636  --LDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSN 693

Query: 373  EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
             KS + W +M+SG +  DC+  +  L++EM    V P+  T  S L  CA V++++ G E
Sbjct: 694  PKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTE 753

Query: 433  FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQ 491
             H  I     F+   L  ++LV+MYA+ G V  +  VF  MSR+ D +++ S+I G+   
Sbjct: 754  THSLIFHTG-FDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKN 812

Query: 492  GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
            G    AL++F+EM ++ + PD VT + VL+ACSHSG V EG+  F+ M ++YG+ P+ +H
Sbjct: 813  GYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADH 872

Query: 552  FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
             ACMVDL GR G L +A+E I K+ + P + +WAT+LGAC+IH +   G+ AAEKL+E  
Sbjct: 873  CACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQAAEKLIELE 932

Query: 612  PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
            P+NS  YVL++N+YAA+G WD++  +R  MR+ GV+K+PGC+W+  G   + F+  D S+
Sbjct: 933  PQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCSWIVVGQETNMFVAGDKSH 992

Query: 672  VQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
              A EI  +L  LT LM++  YVV+ +F  ++E
Sbjct: 993  HSASEIDAILKDLTPLMRENDYVVQLDFFGDDE 1025



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 156/536 (29%), Positives = 258/536 (48%), Gaps = 40/536 (7%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           K +HA ++ LG     VL   +V  YA  +  + A    +    +  L WN ++S++ + 
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVH 212
           GF    +  +  + +  +  + FT+  VL +C  +  V  GR VH + +    E   +  
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCE 198

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
            AL+ MY K   +  AR +FD  +E D VSW +MI  Y   GL +EA ++F EM++ G E
Sbjct: 199 GALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQE 258

Query: 273 V-------------------------------NVITWNTIAGGCLRTGNFKGVLELLSRM 301
                                           NV+ WN +  G  + G     +E    M
Sbjct: 259 PDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNM 318

Query: 302 RTQETYLDSVATVIG--LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
           R  +  + S  + +G  L A + + AL  G  +H  A++        V ++L++MY++C 
Sbjct: 319 R--KAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCG 376

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
            +  A  +F    E++++ WN+ML GY     A E   LF  M   G  P+  T +SIL 
Sbjct: 377 KMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILS 436

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
            CA +  L  G + H  I++   F  +L + N+LV+MYA+SG + +A+  F+L+  RD V
Sbjct: 437 ACACLKYLDLGHQLHSVIIKNK-FASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNV 495

Query: 480 TYTSLIAGYGIQGEGRV-ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           ++  +I GY +Q E  V A  LF  MN   I PD V++ ++LSAC+ S   +E  KQ   
Sbjct: 496 SWNVIIVGY-VQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACA-SVRGLEQGKQVHC 553

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           ++   G   +L   + ++D+Y + G ++ A +I+  MP     +M A + G  QI+
Sbjct: 554 LSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQIN 609



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 151/559 (27%), Positives = 258/559 (46%), Gaps = 43/559 (7%)

Query: 32  NEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALA 91
           N +++  NL+ +     G G   +A E F  +R   A       +   ++     + AL 
Sbjct: 289 NRNVVAWNLMISGHAKGGYG--VEAIEFFQNMR--KAGIKSTRSTLGSVLSAIASLAALD 344

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
            G  +HA A+  GL  N  +   LV+ YA       A  + +  N +  + WN ++  YV
Sbjct: 345 FGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYV 404

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LF 210
           ++G+  E + ++  M+S     D+FTY S+L AC  +  +D G  +HS I      S LF
Sbjct: 405 QNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLF 464

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V NALV MY K G ++ AR+ F+ +  RD VSWN +I  Y  +    EAF LF  M    
Sbjct: 465 VGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRM---- 520

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
                              N  G+L             D V+    L AC+ V  L+ GK
Sbjct: 521 -------------------NLLGILP------------DEVSLASILSACASVRGLEQGK 549

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           ++H  +V+          ++LI MY++C  +  A+ +     E+S+++ N++++GY  ++
Sbjct: 550 QVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQIN 609

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             E++  LFR+M   G+    +T AS+L  C     L  G++ H  IL+  +  +   L 
Sbjct: 610 L-EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLG 668

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            SL+ MY  S +  +A  +F   S  +  V +T++I+G        VAL+L++EM    +
Sbjct: 669 VSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNV 728

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            PD  T V+ L AC+    + +G +    +        +L   A +VD+Y + G +  + 
Sbjct: 729 LPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSA-LVDMYAKCGDVKSSM 787

Query: 570 EIITKMPYTPTSAMWATLL 588
           ++  +M        W +++
Sbjct: 788 QVFKEMSRKKDVISWNSMI 806



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 27/212 (12%)

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
           +L N +V++YA+   V  A+  F  +  +D + + S+++ +  QG   + +K F  +  +
Sbjct: 95  VLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNS 154

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQK--------QFERMTSIYGIFPQLEHFACMVDLY 559
            + P+  T   VLS+C+   +V  G++         FE ++   G          ++ +Y
Sbjct: 155 GVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEG---------ALIGMY 205

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE-----TRPEN 614
            +   L  A+ I            W +++G    +   G+ E A +   E       P+ 
Sbjct: 206 AKCNFLTDARSIFDG-AVELDKVSWTSMIGG---YIKVGLPEEAVKVFQEMEKVGQEPDQ 261

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
              +V + N Y   G  D  + + + M +  V
Sbjct: 262 VA-FVTVINAYVDLGRLDNASDLFSRMPNRNV 292


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 201/620 (32%), Positives = 333/620 (53%), Gaps = 42/620 (6%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA-----CFLVENS 135
           I  C  +++L  G+++H   +  GL+    LV  L+  Y       NA       L ++S
Sbjct: 218 ILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDS 277

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN++IS YV +G +++AL ++ +M    I+ D  T  S+   C E +D+ FG+
Sbjct: 278 VRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGK 337

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  I     + ++ V  AL+ MY K G +    ++F +                    
Sbjct: 338 QIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNH---------------- 381

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                              N+I W+ +   C ++G     LEL    + ++   DS   V
Sbjct: 382 -------------------NLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILV 422

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L ACS +     G +IHG A +  +     V +AL+ +Y++C+D+ ++  +F   ++K
Sbjct: 423 AVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQK 482

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +++WN+++SGY   +CA+E+   FR+M    + PN VTIA IL +CA ++ +   KE H
Sbjct: 483 DLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVH 542

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            Y++R+ +    +L+ NSL+  YA+ G +  +   F+ M  R++V++ S+I G G+    
Sbjct: 543 GYLIRQGL-GSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRT 601

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
              + LF++M  + IKPDHVT  A+LSACSH+G V EG K F+ M   + + PQLE + C
Sbjct: 602 DEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTC 661

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL GRAG LN+A ++I  MP TP   +W +LLG+C+ H +  + E  A  + +  P +
Sbjct: 662 MVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSS 721

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
            GY VL+AN+Y   G   + +KVR+ ++D+G++K PGC+W++  N F  F+  D S+ Q+
Sbjct: 722 VGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDRSHSQS 781

Query: 675 QEIYPLLGGLTELMKDAGYV 694
            EIY  +  LT  +K AGY+
Sbjct: 782 DEIYAAVESLTTEIKRAGYI 801



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 223/478 (46%), Gaps = 46/478 (9%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY-PSVLKACGEMMDVDFGRVVHSCID 202
           N +I  Y  DGF+ +A+ VY +M    ++ + F Y P ++KA G + DV  GR +H  + 
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 203 ACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                  + V N+L++MY K G V+ A ++F+KM E D VSWNTMIS +     +  +  
Sbjct: 137 KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLM 196

Query: 262 LFVEMQ-EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            F  M  E G+                                   Y + VA V  + +C
Sbjct: 197 FFRSMVWEFGI-----------------------------------YPNRVACVSSILSC 221

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA-----YILFKMTAEKS 375
           S + +L  G+EIHG  V+      E + ++LI MY +C  +++A      IL K +  ++
Sbjct: 222 SSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRN 281

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
            + WN M+SGY    C  ++  LF +M   G++P+Y T+ S+  LC+   ++  GK+ H 
Sbjct: 282 AVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHG 341

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I +  + N ++ +  +L++MY + G +     +F      + + ++++I+     G   
Sbjct: 342 LIFKFGLKN-NIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPT 400

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL+LF E        D   +VAVL ACS   L  EG  Q   + +  G    +   + +
Sbjct: 401 KALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGM-QIHGLATKMGFVSDVFVGSAL 459

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH-RNTGIGEWAAEKLLETRP 612
           VDLY +   +  +K++  ++      +  A + G  Q    +  +  +   +L E RP
Sbjct: 460 VDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRP 517



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/531 (23%), Positives = 238/531 (44%), Gaps = 51/531 (9%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F  +I   G +  + +G+Q+H   + LG+  +  +V  L+T Y    +  +A  + E   
Sbjct: 112 FPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMP 171

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGR 195
               + WN +IS + +   Y  +L  ++ M     I  +     S + +C  +  +  GR
Sbjct: 172 EVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGR 231

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD-----AVSWNTMISA 249
            +H   + +  +   ++ ++L+ MY K G +  A  +F+ +L++D     AV WN MIS 
Sbjct: 232 EIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISG 291

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           Y S G + +A  LF++M   G++                 ++  ++ L S          
Sbjct: 292 YVSNGCFSQALLLFIKMMVWGIK----------------PDYSTMVSLFS---------- 325

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYIL 367
                     CS    +  GK+IHG   +  +G   N+R   AL+ MY +C D+     +
Sbjct: 326 ---------LCSESLDIAFGKQIHGLIFK--FGLKNNIRVETALLDMYLKCGDMGTGLKI 374

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVAN 426
           F+ +   ++I W++++S      C  ++  LF E     G+  + + +A +L  C+ +  
Sbjct: 375 FRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVA-VLRACSSLTL 433

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
              G + H    +   F   + + ++LV++YA+   +  +K VF  +S++D V++ +LI+
Sbjct: 434 KPEGMQIHGLATKMG-FVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALIS 492

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           GY        ALK F +M   +I+P+ VT+  +LS C+H   V+   K+        G+ 
Sbjct: 493 GYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLS-VMTLCKEVHGYLIRQGLG 551

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
             +     ++  Y + G +N +     KMP       W +++    +H  T
Sbjct: 552 STVLVSNSLIATYAKCGDINSSLYTFEKMP-ERNDVSWNSIILGMGMHSRT 601



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 174/377 (46%), Gaps = 46/377 (12%)

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           N +I  Y   G + +A  ++++M ++GV+V                              
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVE----------------------------- 107

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
           +  Y   +    G G C     +  G++IHG  ++    +  +V N+L+TMY +C  +  
Sbjct: 108 EFRYFPCLIKAFG-GLCD----VYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVED 162

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCA 422
           A  +F+   E  +++WN+M+SG+        S   FR M +  G+ PN V   S +  C+
Sbjct: 163 AVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCS 222

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-----SRRD 477
            + +L HG+E H  +++  +  E  L+ +SL+EMY + G +  A+++F+ +      RR+
Sbjct: 223 SLQSLTHGREIHGVVVKSGLDVEEYLV-SSLIEMYMKCGSIKNAENIFNSILDKDSVRRN 281

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V +  +I+GY   G    AL LF +M    IKPD+ TMV++ S CS S  +  G KQ  
Sbjct: 282 AVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFG-KQIH 340

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
            +   +G+   +     ++D+Y + G +    +I  +        MW+ ++  C     +
Sbjct: 341 GLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRR-SQNHNLIMWSAVISNCA---QS 396

Query: 598 GIGEWAAEKLLETRPEN 614
           G    A E   E + E+
Sbjct: 397 GCPTKALELFYEFKMED 413



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 11/252 (4%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACA 100
            + + A  G  +KA E F   ++     D + DS     ++  C  +    +G Q+H  A
Sbjct: 389 VISNCAQSGCPTKALELFYEFKM----EDGLADSGILVAVLRACSSLTLKPEGMQIHGLA 444

Query: 101 IALGLEKNPVLVPKLVTFYASFSL--YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
             +G   +  +   LV  YA      Y+   FL  +   +  + WN LIS Y +D    E
Sbjct: 445 TKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQ--KDLVSWNALISGYAQDECADE 502

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVS 217
           AL  ++ MQ   IR +  T   +L  C  +  +   + VH   I      ++ V N+L++
Sbjct: 503 ALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIA 562

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
            Y K G ++ +   F+KM ER+ VSWN++I          E   LF +M   G++ + +T
Sbjct: 563 TYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVT 622

Query: 278 WNTIAGGCLRTG 289
           +  I   C   G
Sbjct: 623 FTAILSACSHAG 634



 Score = 45.8 bits (107), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 5/203 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A +AF  +++     + V  + A I+  C  +  +   K++H   I  GL    ++   
Sbjct: 502 EALKAFRDMQLEEIRPNTV--TIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNS 559

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  YA     N++ +  E    R  + WN +I          E + ++ +M +  I+ D
Sbjct: 560 LIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPD 619

Query: 175 NFTYPSVLKACGEMMDVDFG-RVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           + T+ ++L AC     VD G +   S + D   +  L  +  +V + G+ G ++ A  L 
Sbjct: 620 HVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLI 679

Query: 233 DKM-LERDAVSWNTMISAYASKG 254
             M    D   W +++ +  + G
Sbjct: 680 MAMPCTPDDRIWGSLLGSCKNHG 702


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 194/567 (34%), Positives = 315/567 (55%), Gaps = 27/567 (4%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN +I+ + +   + EAL  + +M       +++++ S L AC  + D+  G  +H  I 
Sbjct: 124 WNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLIS 183

Query: 203 AC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
              +   +F+ + L+  Y K G V  ARR+FD M E++ VSWN +I+ Y   G   EA +
Sbjct: 184 KSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALE 243

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV----ATVIGL 317
            F  M E G + + +T  ++   C     FK  +++ +R+   + + + +    A V   
Sbjct: 244 AFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMY 303

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNA-----LITMYSRCKDLRHAYILFKMTA 372
             C  V   +            C  +   VRNA     +++ Y++   ++ A  +F    
Sbjct: 304 AKCGRVNEAR------------CVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIK 351

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +K I++WN++++GYT     EE+  LFR + R  V P + T  ++L   A +A+L+ G++
Sbjct: 352 QKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQ 411

Query: 433 FHCYILRRAMFNE-----HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            H ++++     +      + + NSL++MY + G V E   VF+ M  +D V++ ++I G
Sbjct: 412 AHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIG 471

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           Y   G G  AL+LF++M ++  KPDHVTM+  L ACSH+GLV EG++ F  MT  +G+ P
Sbjct: 472 YAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLP 531

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
             +H+ CMVDL GRAG L +AK++I  MP  P + +W++LL AC++HRN  +G++ AEK+
Sbjct: 532 VKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKI 591

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
            E  P +SG YVL+ANMY+  G W     VR  MR  GV K PGC+W+D  +    F+V 
Sbjct: 592 FEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVK 651

Query: 668 DTSNVQAQEIYPLLGGLTELMKDAGYV 694
           D  + Q +EIY +L  LT+ M+ AGYV
Sbjct: 652 DKRHPQKKEIYSILKLLTKHMRQAGYV 678



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 231/497 (46%), Gaps = 53/497 (10%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           D+  +  +L  C ++      R VH  +     C E  +F+ N L+ +YGK G +D AR+
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEE--VFIQNRLIDVYGKCGYLDYARK 80

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +FD+M ER+  S+N++IS     G   E+  LF  M E+    +  +WN++  G  +   
Sbjct: 81  VFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEK----DQCSWNSMIAGFAQHDR 136

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
           F+  L+   RM   +  L+  +   GL ACS +  LKLG +IHG   +  Y     + + 
Sbjct: 137 FEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSG 196

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI  YS+C  +  A  +F    EK++++WN +++ Y     A E+   F  M   G +P+
Sbjct: 197 LIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPD 256

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            VT+AS++  CA +A  + G + H  +++   F   L+L N+LV+MYA+ G+V EA+ VF
Sbjct: 257 EVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVF 316

Query: 471 DLM-------------------------------SRRDEVTYTSLIAGYGIQGEGRVALK 499
           D M                                ++D V++ +LIAGY   GE   AL 
Sbjct: 317 DRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALG 376

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS-----IYGIFPQLEHFAC 554
           LF  + +  + P H T   +L+A ++   +  G++    +         G  P +     
Sbjct: 377 LFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNS 436

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE---KLLETR 611
           ++D+Y + G + +   +   M      +    ++G  Q     G G  A E   K+LE+ 
Sbjct: 437 LIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQ----NGYGMEALELFQKMLES- 491

Query: 612 PENSGYYVLIANMYAAT 628
            E   +  +I  + A +
Sbjct: 492 GEKPDHVTMIGTLCACS 508



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 233/477 (48%), Gaps = 35/477 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
           FA      +A + F R+       D VL+  SF   +  C ++K L  G Q+H       
Sbjct: 131 FAQHDRFEEALDWFVRMH----RDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSK 186

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   L+ FY+   L   A  + +    +  + WN LI+ Y ++G   EAL  + 
Sbjct: 187 YSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFG 246

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M     + D  T  SV+ AC  +     G  +H+ +    ++   L + NALV MY K 
Sbjct: 247 RMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKC 306

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+V+ AR +FD+M  R+AVS  TM+S YA     K A  +F  ++++    ++++WN + 
Sbjct: 307 GRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQK----DIVSWNALI 362

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCY 341
            G  + G  +  L L  RM  +E+   +  T    L A +++  L+LG++ H   V+  +
Sbjct: 363 AGYTQNGENEEALGLF-RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGF 421

Query: 342 ----GEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
               GE  +  V N+LI MY +C  +     +F+   EK  ++WN+M+ GY       E+
Sbjct: 422 RFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEA 481

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----W 450
             LF++M  SG +P++VT+   L  C+    ++ G+ +       +M  EH LL     +
Sbjct: 482 LELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFF-----SMTKEHGLLPVKDHY 536

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGE---GR-VALKLFE 502
             +V++  R+G + EAK + + M ++ D V ++SL++   +      G+ VA K+FE
Sbjct: 537 TCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFE 593


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 210/652 (32%), Positives = 358/652 (54%), Gaps = 41/652 (6%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G    A + F  +  + A  D V  +FA ++        +  G+QLH   +  GL+  P+
Sbjct: 90  GESDSAIKLFKDMMSSEAKPDSV--TFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPL 147

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   LVT Y+      +A  L +       + WN +I  YV++GF  +A  ++ +M S  
Sbjct: 148 VGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAG 207

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE--WSLFVHNALVSMYGKFGQVDVA 228
           I+ D+ T+ S L +  E   +   + +H  I   H     +++++AL+ +Y K     +A
Sbjct: 208 IKPDSITFTSFLPSLAESSSLKQIKEIHGYI-VRHGVILDVYLNSALIDLYFKCRDAVMA 266

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            ++F+   + D V +  MIS Y   G+ K+A ++F  + ++ +  N +T+++I       
Sbjct: 267 CKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSI------- 319

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                                       L AC+ + A+KLG+E+HG  ++    E   V 
Sbjct: 320 ----------------------------LPACAGLAAIKLGRELHGYIIKNELEEKCPVG 351

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           +A++ MY++C  L  A+++F   + K  I WNS+++ ++     EE+ +LFR+M   GV+
Sbjct: 352 SAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVK 411

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            + VT+++ L  CA +  L +GKE H ++++ A F   L   ++L+ MYA+ GK+  A+ 
Sbjct: 412 YDCVTVSAALSACANIPALHYGKEIHGFMIKGA-FESDLFDMSALINMYAKCGKLNIARL 470

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VF+LM  ++EV + S+IA YG  G    +L LF  M +  I+PDH+T + +LS+C H+G 
Sbjct: 471 VFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQ 530

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           V +G + F  MT  YGI  Q+EH+ACM DL+GRAG L++A E+IT MP+ P +++W TLL
Sbjct: 531 VEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLL 590

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
           GAC++H N  + E A+  LL+  P+NSGYY+L+ ++ A  G W  + K++  M++ GV+K
Sbjct: 591 GACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQK 650

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC 700
           +PGC+W++  N    F   D S+ ++ +IY LL  L   ++  GYV +   C
Sbjct: 651 VPGCSWIEVNNTTCVFFAADGSHPESPQIYSLLKSLLLELRKVGYVPQAVAC 702



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 146/524 (27%), Positives = 259/524 (49%), Gaps = 47/524 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I CC  +  +  GK +    + +G + +  +   L+  YA      +A    +  
Sbjct: 12  TFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKM 71

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLK-ACGEMMDVDFG 194
             +  + WN++I+ YV+ G    A+ ++K M S   + D+ T+  VL  +C E M V++G
Sbjct: 72  IDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAM-VEYG 130

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H   + +  ++   V N LV++Y K  Q+  AR+LFD M + D V WN MI  Y   
Sbjct: 131 RQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQN 190

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G   +A  LF EM   G++ + IT+                           ++L S+A 
Sbjct: 191 GFMDDASMLFNEMISAGIKPDSITFT--------------------------SFLPSLA- 223

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNALITMYSRCKDLRHAYILFKMT 371
                      +LK  KEIHG  VR  +G   +V   +ALI +Y +C+D   A  +F ++
Sbjct: 224 --------ESSSLKQIKEIHGYIVR--HGVILDVYLNSALIDLYFKCRDAVMACKMFNLS 273

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            +  I+ + +M+SGY      +++  +FR + +  + PN +T +SILP CA +A ++ G+
Sbjct: 274 TKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGR 333

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           E H YI++  +  E   + ++++ MYA+ G++  A  +F  +S +D + + S+I  +   
Sbjct: 334 ELHGYIIKNEL-EEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQD 392

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF-PQLE 550
           G+   A+ LF +M    +K D VT+ A LSAC++   +  G++    M  I G F   L 
Sbjct: 393 GKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFM--IKGAFESDLF 450

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
             + ++++Y + G LN A+ +   M      A W +++ A   H
Sbjct: 451 DMSALINMYAKCGKLNIARLVFNLMQEKNEVA-WNSIIAAYGYH 493



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 193/406 (47%), Gaps = 44/406 (10%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           D +T+P V+K C  + +V  G+V+   I                               +
Sbjct: 9   DKYTFPPVIKCCTGLNNVRLGKVIQDMI------------------------------LE 38

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
              + D    +++I  YA  G  ++A + F +M    ++ + + WN +  G ++ G    
Sbjct: 39  MGFDLDMFVASSLIKLYADNGCIEDARRFFDKM----IDKDCVLWNVMINGYVQCGESDS 94

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
            ++L   M + E   DSV     L        ++ G+++HG  VR        V N L+T
Sbjct: 95  AIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVT 154

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           +YS+ + L  A  LF M  +  ++ WN M+ GY      ++++ LF EM  +G++P+ +T
Sbjct: 155 VYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSIT 214

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S LP  A  ++L+  KE H YI+R  +  + + L ++L+++Y +      A  +F+L 
Sbjct: 215 FTSFLPSLAESSSLKQIKEIHGYIVRHGVILD-VYLNSALIDLYFKCRDAVMACKMFNLS 273

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           ++ D V YT++I+GY + G  + AL++F  + + ++ P+ +T  ++L AC+    +  G 
Sbjct: 274 TKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLG- 332

Query: 534 KQFERMTSIYGIFPQLEH----FACMVDLYGRAGLLNKAKEIITKM 575
               R    Y I  +LE      + ++++Y + G L+ A  I  ++
Sbjct: 333 ----RELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRI 374



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   GV P+  T   ++  C  + N++ GK     IL    F+  + + +SL+++YA +G
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMG-FDLDMFVASSLIKLYADNG 59

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + +A+  FD M  +D V +  +I GY   GE   A+KLF++M  ++ KPD VT   VLS
Sbjct: 60  CIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLS 119

Query: 522 -ACSHSGLVVEGQKQFERMTSIYGI--FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
            +CS +  +VE  +Q   +    G+   P + +   +V +Y +   L  A+++   MP  
Sbjct: 120 ISCSEA--MVEYGRQLHGLVVRSGLDFVPLVGN--TLVTVYSKGRQLGDARKLFDMMPQI 175

Query: 579 PTSAMWATLLGA 590
               +W  ++G 
Sbjct: 176 DL-VVWNRMIGG 186


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 214/652 (32%), Positives = 344/652 (52%), Gaps = 39/652 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +   G+   A + F  +R +    + V  +FA ++  C     L  G QLH  A+  
Sbjct: 131 LNGYVKNGDSGNAIKIFLEMRHSEIKPNSV--TFACVLSVCASEAMLDLGTQLHGIAVGC 188

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE +  +   L+  Y+       A  L +       + WN +IS YV++G   EA  ++
Sbjct: 189 GLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLF 248

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           + M S  I+ D+ T+ S L    E++ +   + +H   I       +F+ +AL+ +Y K 
Sbjct: 249 RGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKC 308

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V++A++   +    D V   TMIS Y   G  KEA + F  + +E ++   +T+++I 
Sbjct: 309 RDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSI- 367

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                               A + + AL LGKE+HGS ++    
Sbjct: 368 ----------------------------------FPAFAGLAALNLGKELHGSIIKTKLD 393

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
           E  +V +A++ MY++C  L  A  +F    EK  I WNSM++  +      E+  LFR+M
Sbjct: 394 EKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQM 453

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              G   + V+I+  L  CA +  L +GKE H  +++  + ++ L   +SL++MYA+ G 
Sbjct: 454 GMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSD-LYAESSLIDMYAKCGN 512

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  ++ VFD M  ++EV++ S+I+ YG  G+ +  L LF EM +N I+PDHVT + ++SA
Sbjct: 513 LNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISA 572

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C H+G V EG + +  MT  YGI  ++EH+AC+ D++GRAG L++A E I  MP+ P + 
Sbjct: 573 CGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAG 632

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W TLLGAC IH N  + E A++ L +  P NSGYYVL+AN+ A  G W K+ KVR+ M+
Sbjct: 633 VWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMK 692

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           + GVRK+PG +W++  N    F+  D S+    +IY +L  L   +K  GYV
Sbjct: 693 ERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYV 744



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 229/460 (49%), Gaps = 45/460 (9%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN +I  +   G +  AL  Y +M    +  D +T+P V+KAC  +  V  G++VH  ++
Sbjct: 26  WNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVN 85

Query: 203 ACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               +  +FV ++L+ +Y + G +  A+ LFD + ++D+V WN M++ Y   G    A +
Sbjct: 86  LMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIK 145

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F+EM+   ++ N +T+  +                                   L  C+
Sbjct: 146 IFLEMRHSEIKPNSVTFACV-----------------------------------LSVCA 170

Query: 322 HVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
               L LG ++HG AV GC  E ++ V N L+ MYS+C+ L+ A  LF    +  +++WN
Sbjct: 171 SEAMLDLGTQLHGIAV-GCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWN 229

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
            ++SGY       E+  LFR M  +G++P+ +T AS LP    + +L+H KE H YI+R 
Sbjct: 230 GIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRH 289

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
           A+  + + L ++L+++Y +   V  A+      S  D V  T++I+GY + G+ + AL+ 
Sbjct: 290 AVVLD-VFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEA 348

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-ACMVDLY 559
           F  + + ++KP  VT  ++  A   +GL      +    + I     +  H  + ++D+Y
Sbjct: 349 FRWLVQERMKPTSVTFSSIFPA--FAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMY 406

Query: 560 GRAGLLNKAKEIITKMPYTPTSAM-WATLLGACQIHRNTG 598
            + G L+ A  +  ++  T   A+ W +++ +C  +   G
Sbjct: 407 AKCGRLDLACRVFNRI--TEKDAICWNSMITSCSQNGRPG 444



 Score =  188 bits (478), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 137/552 (24%), Positives = 259/552 (46%), Gaps = 41/552 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ F   G  + A   + ++     S D    +F +++  C  +K++  GK +H     +
Sbjct: 30  IRGFTMMGQFNYALLFYLKMLGAGVSPDKY--TFPYVVKACCGLKSVKMGKIVHETVNLM 87

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL+++  +   L+  YA     ++A +L +N   +  + WN++++ YV++G    A+ ++
Sbjct: 88  GLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIF 147

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
            +M+   I+ ++ T+  VL  C     +D G  +H     C  E    V N L++MY K 
Sbjct: 148 LEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKC 207

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             +  AR+LFD + + D VSWN +IS Y   GL  EA  LF  M   G++ + IT+    
Sbjct: 208 QCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITF---- 263

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                  ++L  V  ++ L  C         KEIHG  +R    
Sbjct: 264 ----------------------ASFLPCVNELLSLKHC---------KEIHGYIIRHAVV 292

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               +++ALI +Y +C+D+  A      ++    +   +M+SGY      +E+   FR +
Sbjct: 293 LDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWL 352

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            +  ++P  VT +SI P  A +A L  GKE H  I++  + +E   + +++++MYA+ G+
Sbjct: 353 VQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKL-DEKCHVGSAILDMYAKCGR 411

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  VF+ ++ +D + + S+I      G    A+ LF +M     + D V++   LSA
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C++   +  G K+   +     +   L   + ++D+Y + G LN ++ +  +M       
Sbjct: 472 CANLPALHYG-KEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ-EKNEV 529

Query: 583 MWATLLGACQIH 594
            W +++ A   H
Sbjct: 530 SWNSIISAYGNH 541



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 2/225 (0%)

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY R   L+ A  LF          WN M+ G+T +     +   + +M  +GV P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
              ++  C  + +++ GK  H   +      E + + +SL+++YA +G + +A+ +FD +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVH-ETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            ++D V +  ++ GY   G+   A+K+F EM  ++IKP+ VT   VLS C+   ++  G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
            Q   +    G+         ++ +Y +   L  A+++   +P +
Sbjct: 180 -QLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQS 223


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 212/676 (31%), Positives = 348/676 (51%), Gaps = 85/676 (12%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           D  ++ +A I+  C K+  L  G Q+HA  +  G++    L  +L+  Y       +A  
Sbjct: 7   DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARR 66

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           + +  + R    W  ++ +Y   G Y E + ++  M +  +R D+F +P V KAC E+ +
Sbjct: 67  MFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKN 126

Query: 191 VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
              G+ V+   +    E +  V  +++ M+ K G++D+ARR F+++  +D          
Sbjct: 127 YRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD---------- 176

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
                                    V  WN +  G    G FK  L +  +M  +    +
Sbjct: 177 -------------------------VFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPN 211

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN---VRNALITMYSRCKDLRHAYI 366
           S+     + AC+++  L+ G+EIHG  ++    E ++   V N+L+  Y++C+ +  A  
Sbjct: 212 SITIASAVSACTNLSLLRHGREIHGYCIK--VEELDSDLLVGNSLVDYYAKCRSVEVARR 269

Query: 367 LFKMTAEKSIITWNSML--SGYT---------------HLDCAEESAF------------ 397
            F M  +  +++WN+ML  +G+T               H+ C+  S              
Sbjct: 270 KFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSII 329

Query: 398 --------------LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
                         L REM  S VE N VT+ S LP C+++A L+ GKE H +I+R  + 
Sbjct: 330 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD 389

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
             + +L NSL++MY R G + +++ +FDLM +RD V++  +I+ YG+ G G  A+ LF++
Sbjct: 390 TCNFIL-NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQ 448

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
                +KP+H+T   +LSACSHSGL+ EG K F+ M + Y + P +E +ACMVDL  RAG
Sbjct: 449 FRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAG 508

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
             N+  E I KMP+ P +A+W +LLGAC+IH N  + E+AA  L E  P++SG YVL+AN
Sbjct: 509 QFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMAN 568

Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGG 683
           +Y+A G W+  AK+R  M++ GV K PGC+W++       F+V DTS+   ++I   +  
Sbjct: 569 IYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMES 628

Query: 684 LTELMKDAGYVVKEEF 699
           L   +K+ GYV    F
Sbjct: 629 LYFDIKEIGYVPDTNF 644


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 206/616 (33%), Positives = 334/616 (54%), Gaps = 20/616 (3%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           +K+ +Q +QLHA  +      +   +  L++ Y+  +L +++  L    +    L W  +
Sbjct: 19  IKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSV 77

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH 205
           I  Y   G   ++L  +  M +  +  D+  +PSVLK+C  +MD++ G  +H   I    
Sbjct: 78  IRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGL 137

Query: 206 EWSLFVHNALVSMYGKFGQVDVARR-------LFDKMLERDAVSWNTMISAYASKGLWKE 258
           ++ L+  NAL++MY K   ++ + R       +FD+M ER         S      L ++
Sbjct: 138 DFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTR-------SVRTVSVLSED 190

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           + +   EM  E    ++++WNTI  G  R G ++  L ++  M       DS      L 
Sbjct: 191 SVRKIFEMMPEK---DLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
             +    +  GKEIHG ++R        V ++LI MY++C  +  +  +F +  E+  I+
Sbjct: 248 LIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGIS 307

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WNS+++G       +E    FR+M  + ++P   + +SI+P CA +  L  GK+ H YI 
Sbjct: 308 WNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT 367

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R   F+E++ + +SLV+MYA+ G +  AK +FD M  RD V++T++I G  + G+   A+
Sbjct: 368 RNG-FDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAI 426

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LFE+M    IKP+HV  +AVL+ACSH GLV E  K F  MT  +GI P +EH+A + DL
Sbjct: 427 ELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDL 486

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L +A + I  M   PT ++WATLL AC++H N  + E  A ++LE  P N+G Y
Sbjct: 487 LGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAY 546

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           +L+AN+Y+A   W + AK R  MR +G+RK P C+W++  N    F+  D S+   ++I 
Sbjct: 547 ILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIR 606

Query: 679 PLLGGLTELMKDAGYV 694
             +  L ELM+  GYV
Sbjct: 607 EAMEVLVELMEKEGYV 622



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+ I+  C  +  L  GKQLH      G ++N  +   LV  YA       A  + +  
Sbjct: 342 SFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
            +R  + W  +I      G   +A+ +++QM++  I+ ++  + +VL AC     VD
Sbjct: 402 RLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVD 458


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 214/655 (32%), Positives = 346/655 (52%), Gaps = 42/655 (6%)

Query: 61  TRIRITAASHDVVLDSF---------AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           T +R+  A H ++L +F          H++    K   LA+ +++         ++ P  
Sbjct: 26  TGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRV--------FDEMPD- 76

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQ 165
            P L T  A  S   ++  + +   +   +P      +N LI+ +   G  A ++ +Y+ 
Sbjct: 77  -PNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 166 M-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL------FVHNALVSM 218
           + +   +R    T  +++     + D   G  VH     C    L      FV + LV M
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVH-----CQVLRLGFGAYAFVGSPLVDM 190

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G +  ARR+F +M  +  V +NT+I+      + ++A  LF  M    V+ + ITW
Sbjct: 191 YAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITW 246

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
            T+  G  + G     L++  RMR +   +D       L AC  + A + GK+IH    R
Sbjct: 247 TTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITR 306

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             Y +   V +AL+ MYS+C+ +R A  +F+    ++II+W +M+ GY    C+EE+   
Sbjct: 307 TWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRA 366

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F EM   G++P+  T+ S++  CA +A+L+ G +FHC  L   +   ++ + N+LV +Y 
Sbjct: 367 FSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM-RYITVSNALVTLYG 425

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           + G + +A  +FD MS  D+V++T+L+ GY   G+ +  + LFE+M  N +KPD VT + 
Sbjct: 426 KCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIG 485

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           VLSACS +GLV +G   F+ M   + I P  +H+ CM+DLY R+G   +A+E I +MP++
Sbjct: 486 VLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHS 545

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638
           P +  WATLL +C++  N  IG+WAAE LLET P+N   YVL+ +M+AA G W ++A +R
Sbjct: 546 PDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLR 605

Query: 639 TCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
             MRD  V+K PGC+W+   N    F  DD S+  +  IY  L  L   M + GY
Sbjct: 606 RGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGY 660


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 220/674 (32%), Positives = 345/674 (51%), Gaps = 52/674 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCC-----GKVKALAQGKQLHA 98
           + + A  G+ S +   F ++     S  V +DS+    F C       ++++  G+QLH 
Sbjct: 167 MNELAKSGDFSGSIGLFKKM----MSSGVEMDSYT---FSCVSKSFSSLRSVNGGEQLHG 219

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
             +  G  +   +   LV FY      ++A  + +    R  + WN +I+ YV +G   +
Sbjct: 220 YILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVS 217
            L V+ QM    I  D  T  SV   C +   +  GR VH   + AC        N L+ 
Sbjct: 280 GLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLD 339

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY K G +D A+ +F +M  R  VS+ +MI+ YA +GL  EA +LF EM+EEG+  +V T
Sbjct: 340 MYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
              +                                   L  C+    L  GK +H    
Sbjct: 400 VTAV-----------------------------------LNCCARNRLLDEGKRVHEWIK 424

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
               G    V NAL+ MY++C  +R A ++F     K II+WN+++ GY+    A E+  
Sbjct: 425 ENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALS 484

Query: 398 LFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
           LF  +       P+  T+A +LP CA ++    G+E H YI+R   F++  +  NSLV+M
Sbjct: 485 LFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA-NSLVDM 543

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G +  A+ +FD ++ +D V++T +IAGYG+ G G+ A+ LF +M +  I+PD ++ 
Sbjct: 544 YAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISF 603

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           V++L ACSHSGLV EG + F  M     I P +EH+AC+VD+  R G L+KA   I  MP
Sbjct: 604 VSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMP 663

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             P + +W  LL  C+IH +  + E  AEK+ E  PEN+GYYVL+AN+YA    W+++ +
Sbjct: 664 IPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKR 723

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY--V 694
           +R  +   G+RK PGC+W++     + F+  D+SN + ++I   L G+   M + GY  +
Sbjct: 724 LRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPL 783

Query: 695 VKEEFCSEEEIVEE 708
            K      EE+ +E
Sbjct: 784 TKYALIDAEEMEKE 797



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 149/568 (26%), Positives = 268/568 (47%), Gaps = 59/568 (10%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L+ F   GNL  A     ++   +   D+   +   ++  C   K+L  GK++       
Sbjct: 68  LRRFCESGNLKNA----VKLLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGN 123

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   +  L  KL   Y +      A  + +   I   L WN+L++   + G ++ ++ ++
Sbjct: 124 GFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLF 183

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
           K+M S  +  D++T+  V K+   +  V+ G  +H  I  +       V N+LV+ Y K 
Sbjct: 184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKN 243

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            +VD AR++FD+M ERD +SWN++I+ Y S GL ++   +FV+M   G+E+++ T  ++ 
Sbjct: 244 HRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVF 303

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            GC             SR+                        + LG+ +H   V+ C+ 
Sbjct: 304 AGCAD-----------SRL------------------------ISLGRAVHCFGVKACFS 328

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
             +   N L+ MYS+C DL  A ++F+  + +S++++ SM++GY     A E+  LF EM
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              G+ P+  T+ ++L  CAR   L  GK  H +I    M  + + + N+L++MYA+ G 
Sbjct: 389 EEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFD-IFVSNALMDMYAKCGS 447

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE-EMNKNQIKPDHVTMVAVLS 521
           + EA+ VF  M  +D +++ ++I GY        AL LF   + + +  PD  T+  VL 
Sbjct: 448 MREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLP 507

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEIITKM 575
           AC+           F++   I+G   +  +F+       +VD+Y + G L  A+ +   +
Sbjct: 508 ACA-------SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDI 560

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWA 603
             +     W  ++    +H   G G+ A
Sbjct: 561 T-SKDLVSWTVMIAGYGMH---GFGKEA 584


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 193/642 (30%), Positives = 351/642 (54%), Gaps = 39/642 (6%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q HA  +  G + +  +  KL+  Y++++ +N+A  ++++        ++ LI    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVH 212
            + +++ V+ +M S  +  D+   P++ K C E+     G+ +H  SC+    +   FV 
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGL-DMDAFVQ 154

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
            ++  MY + G++  AR++FD+M ++D V+ + ++ AYA KG  +E  ++  EM+  G+E
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            N+++WN I  G  R+G  K  + +  ++       D V     L +      L +G+ I
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLR-----------------HAYI--------- 366
           HG  ++    + + V +A+I MY +   +                  +AYI         
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 367 --------LFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
                   LFK  T E ++++W S+++G        E+  LFREM  +GV+PN+VTI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP C  +A L HG+  H + +R  +  +++ + ++L++MYA+ G++  ++ VF++M  ++
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLL-DNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V + SL+ G+ + G+ +  + +FE + + ++KPD ++  ++LSAC   GL  EG K F+
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
            M+  YGI P+LEH++CMV+L GRAG L +A ++I +MP+ P S +W  LL +C++  N 
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDA 657
            + E AAEKL    PEN G YVL++N+YAA G W ++  +R  M  LG++K PGC+W+  
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 658 GNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            N     L  D S+ Q  +I   +  +++ M+ +G+    +F
Sbjct: 634 KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDF 675



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 217/465 (46%), Gaps = 57/465 (12%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGL----- 105
            +++   F+R+     SH ++ DS    ++   C ++ A   GKQ+H  +   GL     
Sbjct: 97  FTQSIGVFSRM----FSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 106 --------------------------EKNPVLVPKLVTFYASFSLYNNACFLV---ENSN 136
                                     +K+ V    L+  YA          ++   E+S 
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 137 IRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           I   +  WN ++S + R G++ EA+ +++++       D  T  SVL + G+   ++ GR
Sbjct: 213 IEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272

Query: 196 VVHSCI-------DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           ++H  +       D C      V +A++ MYGK G V     LF++    +A   N  I+
Sbjct: 273 LIHGYVIKQGLLKDKC------VISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYIT 326

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
             +  GL  +A ++F   +E+ +E+NV++W +I  GC + G     LEL   M+      
Sbjct: 327 GLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKP 386

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           + V     L AC ++ AL  G+  HG AVR    +  +V +ALI MY++C  +  + I+F
Sbjct: 387 NHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVF 446

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
            M   K+++ WNS+++G++    A+E   +F  + R+ ++P++++  S+L  C +V    
Sbjct: 447 NMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
            G ++   +         L  ++ +V +  R+GK+ EA   +DL+
Sbjct: 507 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA---YDLI 548



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 123/304 (40%), Gaps = 49/304 (16%)

Query: 11  NGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAG---RGNLSKAFEAFTRIRITA 67
           NGL    LE F        +  E  M +N++      AG    G   +A E F  +++  
Sbjct: 331 NGLVDKALEMF-------ELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAG 383

Query: 68  ASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127
              + V  +   ++  CG + AL  G+  H  A+ + L  N  +   L+  YA     N 
Sbjct: 384 VKPNHV--TIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINL 441

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
           +  +      +  + WN L++ +   G   E + +++ +   R++ D  ++ S+L ACG+
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501

Query: 188 MMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWN 244
           +   D G      +   +  +  L  ++ +V++ G+ G++  A  L  +M  E D+  W 
Sbjct: 502 VGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWG 561

Query: 245 TMISA----------------------------------YASKGLWKEAFQLFVEMQEEG 270
            ++++                                  YA+KG+W E   +  +M+  G
Sbjct: 562 ALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLG 621

Query: 271 VEVN 274
           ++ N
Sbjct: 622 LKKN 625


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 215/640 (33%), Positives = 329/640 (51%), Gaps = 70/640 (10%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNL 145
           K++AQ KQ+H+  I  GL  NP++  +++ F     L +     +    +  P    WN 
Sbjct: 30  KSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNN 89

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           +I  Y R G    A+ +Y +M  R +  D +TYP +LK       V  GR +H   +   
Sbjct: 90  MIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLG 149

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
              ++FV NAL+ +Y   G+V VAR +FD+  + D V+WN MIS Y     + E+ +LF 
Sbjct: 150 FSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFD 209

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           EM+                                RMR   +   S+  V  L ACS + 
Sbjct: 210 EME--------------------------------RMRVLPS---SITLVSVLSACSKLK 234

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L +GK +H             + NALI MY+ C D+  A  +F     + +I+W ++++
Sbjct: 235 DLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVT 294

Query: 385 GYTHL----------DCAEESAF---------------------LFREMFRSGVEPNYVT 413
           G+T+L          D   E  F                     LFREM  + ++P+  T
Sbjct: 295 GFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFT 354

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           + SIL  CA +  L+ G+    YI +  +  +   + N+L++MY   G V +A  +F+ M
Sbjct: 355 MVSILTACAHLGALELGEWIKAYIDKNEIKIDS-FVGNALIDMYFNCGNVEKAIRIFNAM 413

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             RD++++T++I G  I G G  AL +F +M K  I PD VT + VL AC+HSG+V +G+
Sbjct: 414 PHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGK 473

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           K F RMT+ +GI P + H+ CMVDL GRAG L +A E+I  MP  P S +W +LLGAC++
Sbjct: 474 KFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRV 533

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           HR+  + E AA+++LE  PEN   YVL+ N+YAA   W+KL +VR  M D G++K PGC+
Sbjct: 534 HRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCS 593

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
            ++       F+  D  + Q++EIY  L  ++  +K AGY
Sbjct: 594 LIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGY 633



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 202/496 (40%), Gaps = 89/496 (17%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           K F+   R+R+  +S  +V      ++  C K+K L  GK++H     L +E   VL   
Sbjct: 206 KLFDEMERMRVLPSSITLV-----SVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENA 260

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR---------------------- 152
           L+  YA+    + A  + +N   R  + W  +++ +                        
Sbjct: 261 LIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSW 320

Query: 153 ----DGF-----YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
               DG+     + E L ++++MQ+  I+ D FT  S+L AC  +  ++ G  + + ID 
Sbjct: 321 TAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDK 380

Query: 204 CH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              +   FV NAL+ MY   G V+ A R+F+ M  RD +SW  +I   A  G  +EA  +
Sbjct: 381 NEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDM 440

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F +M +  +  + +T   +   C  +G      +  +RM TQ     +VA         H
Sbjct: 441 FSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVA---------H 491

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-MTAEKSIITWNS 381
            G                          ++ +  R   L+ A+ + K M  + + I W S
Sbjct: 492 YG-------------------------CMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGS 526

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPN----YVTIASILPLCARVANLQHGKEFHCYI 437
           +L G   +   EE A +  +     +EP     YV + +I   C R   L   ++    +
Sbjct: 527 LL-GACRVHRDEEMAEMAAQQILE-LEPENGAVYVLLCNIYAACNRWEKLHEVRKL---M 581

Query: 438 LRRAMFNE---HLLLWNSLVEMYARSGKV-PEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           + R +       L+  N  V  +    +V P++K ++   S+ DE++     AGY     
Sbjct: 582 MDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIY---SKLDEMSVDLKFAGYS-PDT 637

Query: 494 GRVALKLFEEMNKNQI 509
             V L + EE  ++ +
Sbjct: 638 SEVFLDIGEEEKESAV 653


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/617 (32%), Positives = 335/617 (54%), Gaps = 38/617 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  CG ++ +  G+ +H C +  GL  + V+   LV  YA  + +  A  L +  
Sbjct: 108 TYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEM 167

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +    WN +IS Y + G + EAL  +  M+      D+ T  + + +C  ++D+D GR
Sbjct: 168 PDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGR 227

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   +++      FV  ALV MYGK GQ+++A  +F++M  +                
Sbjct: 228 EIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNK---------------- 271

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                               V+ WN++  G    G+    ++L  RM ++          
Sbjct: 272 -------------------TVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLT 312

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L ACS    L  GK +HG  +R        + ++L+ +Y +C  +  A  +FK+  + 
Sbjct: 313 STLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKT 372

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           + ++WN M+SGY       ++  LF EM +S VEP+ +T  S+L  C+++A L+ G+E H
Sbjct: 373 TTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIH 432

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             I+ R + N  +++  +L++MYA+ G V EA  VF  +  RD V++TS+I  YG  G  
Sbjct: 433 NLIVERNLGNNEVVM-GALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRV 491

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL+LF EM ++ +KPD VT +A+LSACSH+GLV +G   F +M ++YGI P++EH++C
Sbjct: 492 YEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSC 551

Query: 555 MVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           ++ L GRAG L++A EI+   P  +    + +TL  AC++H+N  +G   AE L++  P+
Sbjct: 552 LITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPD 611

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           +S  Y++++NMYA+ G WD++  VR+ M+DLG++K PGC+W++      PF V+D S+  
Sbjct: 612 DSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVEDNSHYH 671

Query: 674 AQEIYPLLGGLTELMKD 690
            + I  +L  LT  M+D
Sbjct: 672 LEGIGNILSYLTSHMED 688


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 201/617 (32%), Positives = 339/617 (54%), Gaps = 51/617 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL-PWNLL 146
           K L++GK++H+  +  G   +P+ +  L+  Y+  +  N A  +  +      +  +N +
Sbjct: 51  KNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAI 110

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACH 205
           IS ++ +GF  E    Y++M++  +  D FT+P  +KAC +++++   + +H  +     
Sbjct: 111 ISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGL 167

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           E  +F+ +ALV+ Y KFG ++ A+  F+++  RD                          
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRD-------------------------- 201

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVG 324
                    V+ WN +  G  + G F+ VLE   RM   E+ + S  TV G L   + +G
Sbjct: 202 ---------VVLWNAMVNGYAQIGQFEMVLETFRRM-NDESVVPSRFTVTGVLSVFAVMG 251

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L  G+ IHG A++  Y     V N+LI MY +CK +  A  +F+M  EK I +WNS++S
Sbjct: 252 DLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVS 311

Query: 385 GYTHLDCAEESAFL--FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
              H  C +    L     M  +G++P+ VT+ ++LP C+ +A L HG+E H Y++   +
Sbjct: 312 --VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGL 369

Query: 443 FNE-----HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
             +      +LL N++++MYA+ G + +A  VF+ MS +D  ++  +I GYG+ G G  A
Sbjct: 370 GKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEA 429

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L++F  M + Q+KPD VT V VLSACSH+G V +G+    +M S Y + P +EH+ C++D
Sbjct: 430 LEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVID 489

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           + GRAG L++A E+   MP      +W  LL AC++H++  + E AA+++ E  PE+ G 
Sbjct: 490 MLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGS 549

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           YVL++N+Y A G ++++ +VR  MR   VRK PGC+W++  N    F+  D ++ +A  I
Sbjct: 550 YVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSI 609

Query: 678 YPLLGGLTELMKDAGYV 694
           Y  L  LT  +++ GYV
Sbjct: 610 YAGLNSLTARLREHGYV 626



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 10/187 (5%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T  + L   A   NL  GKE H Y+L     N  L +  SL+ MY++  ++  A S+
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSI-TSLINMYSKCNQMNFALSI 94

Query: 470 F-DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           F D     +   + ++I+G+   G      + +++M    + PD  T    + AC    L
Sbjct: 95  FSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC----L 150

Query: 529 VVEGQKQFERMTSIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
            V   K+   +   +G+  +L+ F  + +V+ Y + GL+  A+    ++P        A 
Sbjct: 151 DVLEIKKIHGLLFKFGL--ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAM 208

Query: 587 LLGACQI 593
           + G  QI
Sbjct: 209 VNGYAQI 215


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 208/622 (33%), Positives = 333/622 (53%), Gaps = 45/622 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++       A+ +G Q+H   I  GL+    +   +V  Y+   + ++A  + ++ 
Sbjct: 195 TFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM 254

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+ +V +G   EA  ++ +M+   ++     + +V+K C  + ++ F +
Sbjct: 255 ENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAK 314

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASK 253
            +H   I    ++ L +  AL+  Y K  ++D A +LF  M   ++ VSW  +IS Y   
Sbjct: 315 QLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQN 374

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G    A  LF +M+ EGV  N  T++TI                                
Sbjct: 375 GRTDRAMNLFCQMRREGVRPNHFTYSTI-------------------------------- 402

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L A + V       +IH   V+  Y    +V  AL   YS+  D   A  +F++  E
Sbjct: 403 ---LTANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDE 455

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR-VANLQHGKE 432
           K I+ W++MLSGY  +   E +  +F ++ + GVEPN  T +S+L  CA   A+++ GK+
Sbjct: 456 KDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ 515

Query: 433 FH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           FH C I  ++ F+  L + ++LV MYA+ G +  A  VF     RD V++ S+I+GY   
Sbjct: 516 FHSCSI--KSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQH 573

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G+ +LK+FEEM    ++ D +T + V+SAC+H+GLV EGQ+ F+ M   Y I P +EH
Sbjct: 574 GCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEH 633

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           ++CMVDLY RAG+L KA ++I KMP+   + +W TLL AC++H N  +GE AAEKL+  +
Sbjct: 634 YSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQ 693

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P++S  YVL++N+YA  G W + AKVR  M    V+K  G +W++  N    F+  D S+
Sbjct: 694 PQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSH 753

Query: 672 VQAQEIYPLLGGLTELMKDAGY 693
            Q+  IY  L  L+  +KDAGY
Sbjct: 754 PQSDRIYLKLEELSIRLKDAGY 775



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 149/573 (26%), Positives = 275/573 (47%), Gaps = 48/573 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L +F+      +A   F  +R + +  D    S + ++  CG +     GKQ+H   I  
Sbjct: 64  LFEFSRNDQNKEALNLFLGLRRSGSPTDG--SSLSCVLKVCGCLFDRIVGKQVHCQCIKC 121

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G  ++  +   LV  Y       +   + +   ++  + W  L++ Y ++G   +AL ++
Sbjct: 122 GFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLF 181

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            QMQ   I+ + FT+ +VL        V+ G  VH+  I +  + ++FV N++V+MY K 
Sbjct: 182 SQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKS 241

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V  A+ +FD M  R+AVSWN+MI+ + + GL  EAF+LF  M+ EGV++         
Sbjct: 242 LMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKL--------- 292

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                               TQ  +    ATVI L  C+++  +   K++H   ++    
Sbjct: 293 --------------------TQTIF----ATVIKL--CANIKEMSFAKQLHCQVIKNGSD 326

Query: 343 EYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
              N++ AL+  YS+C ++  A+ LF  M   +++++W +++SGY      + +  LF +
Sbjct: 327 FDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQ 386

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M R GV PN+ T ++IL   A V+  Q     H  ++ +  +     +  +L + Y++ G
Sbjct: 387 MRREGVRPNHFTYSTILTANAAVSPSQ----IHALVV-KTNYENSPSVGTALSDSYSKIG 441

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
              EA  +F+L+  +D V ++++++GY   G+   A+K+F ++ K  ++P+  T  +VL+
Sbjct: 442 DANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLN 501

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           AC+     VE  KQF   +   G    L   + +V +Y + G +  A E+  K       
Sbjct: 502 ACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVF-KRQVDRDL 560

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
             W +++     H   G G+ + +   E R +N
Sbjct: 561 VSWNSMISGYAQH---GCGKKSLKIFEEMRSKN 590



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 199/452 (44%), Gaps = 43/452 (9%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCID 202
           N L+  + R+    EAL ++  ++      D  +   VLK CG + D   G+ VH  CI 
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                 + V  +LV MY K   V+   R+FD+M  +                        
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVK------------------------ 156

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
                      NV++W ++  G  + G  +  L+L S+M+ +    +       LG  + 
Sbjct: 157 -----------NVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAA 205

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            GA++ G ++H   ++        V N+++ MYS+   +  A  +F     ++ ++WNSM
Sbjct: 206 DGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSM 265

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++G+       E+  LF  M   GV+      A+++ LCA +  +   K+ HC +++   
Sbjct: 266 IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGS 325

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            +  L +  +L+  Y++  ++ +A  +F +M   ++ V++T++I+GY   G    A+ LF
Sbjct: 326 -DFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLF 384

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
            +M +  ++P+H T   +L+A   +  V   Q     + + Y   P +     + D Y +
Sbjct: 385 CQMRREGVRPNHFTYSTILTA---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSK 439

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
            G  N+A +I   +      A  A L G  Q+
Sbjct: 440 IGDANEAAKIFELIDEKDIVAWSAMLSGYAQM 471



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 3/228 (1%)

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
           H+  LF  T ++ +   N +L  ++  D  +E+  LF  + RSG   +  +++ +L +C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            + +   GK+ HC  + +  F E + +  SLV+MY ++  V + + VFD M  ++ V++T
Sbjct: 104 CLFDRIVGKQVHCQCI-KCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           SL+AGY   G    ALKLF +M    IKP+  T  AVL   +  G V +G  Q   M   
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKG-VQVHTMVIK 221

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G+   +     MV++Y ++ +++ AK +   M     +  W +++  
Sbjct: 222 SGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAG 268


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 197/646 (30%), Positives = 352/646 (54%), Gaps = 39/646 (6%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q HA  +  G + +  +  KL+  Y++++ +N+A  ++++        ++ LI    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVH 212
            +++++ V+ +M S  +  D    P++ K C E+     G+ +H  +C+    +   FV 
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGL-DMDAFVQ 154

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
            +L  MY + G++  AR++FD+M E+D V+ + ++  YA KG  +E  ++  EM++ G+E
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            N+++WN I  G  R+G  K  + +  +M       D V     L +      L +G++I
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274

Query: 333 HG--------------SAVRGCYG-------------EYE----NVRNALITMYSRCKDL 361
           HG              SA+   YG             E+E     V NA IT  SR   +
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 362 RHAYILFKMTAEK----SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
             A  +F +  E+    ++++W S+++G        E+  LFREM  +GV+PN VTI S+
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP C  +A L HG+  H + +R  + ++ + + ++L++MYA+ G++  ++ VF++M  ++
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDD-VHVGSALIDMYAKCGRIKMSQIVFNMMPTKN 453

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V + SL+ GY + G+ +  + +FE + + ++KPD ++  ++LSAC   GL  EG K F 
Sbjct: 454 LVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFN 513

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
            M+  YGI P+LEH++CMV+L GRAG L +A ++I ++P+ P S +W  LL +C++  N 
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNV 573

Query: 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDA 657
            + E AA+KL    PEN G YVL++N+YAA G W ++  +R  M  LG++K PGC+W+  
Sbjct: 574 DLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 658 GNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
            N     L  D S+ Q  +I   +  ++E M+ +G+    +F  ++
Sbjct: 634 KNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQD 679



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 217/465 (46%), Gaps = 57/465 (12%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGL----- 105
            S++   F+R+     SH ++ D+    ++   C ++ A   GKQ+H  A   GL     
Sbjct: 97  FSQSIGVFSRM----FSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAF 152

Query: 106 --------------------------EKNPVLVPKLVTFYASFSLYNNACFLV---ENSN 136
                                     EK+ V    L+  YA          ++   E S 
Sbjct: 153 VQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSG 212

Query: 137 IRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           I   +  WN ++S + R G++ EA+ ++++M       D  T  SVL + G+  +++ GR
Sbjct: 213 IEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGR 272

Query: 196 VVHSCI-------DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
            +H  +       D C      V +A++ MYGK G V    +LFD+    +    N  I+
Sbjct: 273 QIHGYVIKQGLLKDKC------VISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYIT 326

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
             +  GL  +A ++F   +E+ +E+NV++W +I  GC + G     LEL   M+      
Sbjct: 327 GLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKP 386

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           + V     L AC ++ AL  G+  HG AVR    +  +V +ALI MY++C  ++ + I+F
Sbjct: 387 NRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVF 446

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
            M   K+++ WNS+++GY+    A+E   +F  + R+ ++P++++  S+L  C +V    
Sbjct: 447 NMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
            G ++   +         L  ++ +V +  R+GK+ EA   +DL+
Sbjct: 507 EGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA---YDLI 548



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 123/304 (40%), Gaps = 49/304 (16%)

Query: 11  NGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAG---RGNLSKAFEAFTRIRITA 67
           NGL    LE F        +  E  M +N++      AG    G   +A E F  +++  
Sbjct: 331 NGLVDKALEMF-------GLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAG 383

Query: 68  ASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127
              + V  +   ++  CG + AL  G+  H  A+ + L  +  +   L+  YA       
Sbjct: 384 VKPNRV--TIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKM 441

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
           +  +      +  + WN L++ Y   G   E + +++ +   R++ D  ++ S+L ACG+
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501

Query: 188 MMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWN 244
           +   D G    + +   +  +  L  ++ +V++ G+ G++  A  L  ++  E D+  W 
Sbjct: 502 VGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWG 561

Query: 245 TMISA----------------------------------YASKGLWKEAFQLFVEMQEEG 270
            ++++                                  YA+KG+W E   +  +M+  G
Sbjct: 562 ALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLG 621

Query: 271 VEVN 274
           ++ N
Sbjct: 622 LKKN 625


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 210/657 (31%), Positives = 338/657 (51%), Gaps = 49/657 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  FA  G+  K    F R+  T +  +    + + ++  C     L  G+ +H+ AI +
Sbjct: 302 LNGFAQMGDAEKVLNLFCRM--TGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRI 359

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFL---VENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           G E +  +   LV  Y+   L  +A  +   +E+ ++   + W+ +I+   + G   EA 
Sbjct: 360 GCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDV---VSWSAIITCLDQKGQSREAA 416

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH---EWSLFVHNALVS 217
            V+K+M+   +  + FT  S++ A  ++ D+ +G  +H+C+  C    E+   V NALV+
Sbjct: 417 EVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACV--CKYGFEYDNTVCNALVT 474

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY K G V    R+F+    RD +SWN ++S +          ++F +M  EG   N+ T
Sbjct: 475 MYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYT 534

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           + +I                                   L +CS +  + LGK++H   V
Sbjct: 535 FISI-----------------------------------LRSCSSLSDVDLGKQVHAQIV 559

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           +      + V  AL+ MY++ + L  A  +F    ++ +  W  +++GY      E++  
Sbjct: 560 KNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVK 619

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
            F +M R GV+PN  T+AS L  C+R+A L  G++ H   ++     + + + ++LV+MY
Sbjct: 620 CFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGD-MFVASALVDMY 678

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           A+ G V +A+ VFD +  RD V++ ++I GY   G+G  ALK FE M      PD VT +
Sbjct: 679 AKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFI 738

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
            VLSACSH GL+ EG+K F  ++ IYGI P +EH+ACMVD+ GRAG  ++ +  I +M  
Sbjct: 739 GVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL 798

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637
           T    +W T+LGAC++H N   GE AA KL E  PE    Y+L++NM+AA G WD +  V
Sbjct: 799 TSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNV 858

Query: 638 RTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           R  M   GV+K PGC+WV+       FL  D S+ + +EI+  L  L + +   GY 
Sbjct: 859 RALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYT 915



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 137/546 (25%), Positives = 257/546 (47%), Gaps = 52/546 (9%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
           L  ++ ++  C     L +GK +H   I  G+  +  L   LV  YA     N AC +  
Sbjct: 128 LRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 187

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
               R  + W  LI+ +V +G+ + A+ ++ +M+   +  + FTY + LKAC   +D++F
Sbjct: 188 EIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEF 247

Query: 194 GRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G+ VH+      ++S LFV +ALV +Y K G++ +A R+F  M +++AVSWN +++ +A 
Sbjct: 248 GKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQ 307

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G  ++   LF  M    +  +  T +T+  GC  +GN                      
Sbjct: 308 MGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGN---------------------- 345

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                        L+ G+ +H  A+R GC  + E +   L+ MYS+C     A  +F   
Sbjct: 346 -------------LRAGQIVHSLAIRIGCELD-EFISCCLVDMYSKCGLAGDALKVFVRI 391

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            +  +++W+++++       + E+A +F+ M  SGV PN  T+AS++     + +L +G+
Sbjct: 392 EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGE 451

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
             H  + +   F     + N+LV MY + G V +   VF+  + RD +++ +L++G+   
Sbjct: 452 SIHACVCKYG-FEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDN 510

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM--TSIYGIFPQL 549
                 L++F +M      P+  T +++L +CS    V  G++   ++   S+ G     
Sbjct: 511 ETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDG----- 565

Query: 550 EHF--ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
             F    +VD+Y +   L  A+ I  ++      A W  ++     +   G GE A +  
Sbjct: 566 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA-WTVIVAG---YAQDGQGEKAVKCF 621

Query: 608 LETRPE 613
           ++ + E
Sbjct: 622 IQMQRE 627


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 209/661 (31%), Positives = 346/661 (52%), Gaps = 17/661 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +AG  + +KAF+ F R+  T A+ +    +F  I+  C     L +G+++H    A+G+E
Sbjct: 132 YAGNNHPAKAFDTFERM--TDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGME 189

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L+T Y+     + AC +      R  + W  +I    +     EA  +Y+QM
Sbjct: 190 TDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQM 249

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQV 225
               I  +  T+ S+L +C     ++ GR +HS I +   E  + V NAL++MY K   V
Sbjct: 250 LQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSV 309

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGL-----WKEAFQLFVEMQEEGVEVNVITWNT 280
             AR +FD+M +RD +SW+ MI+ YA  G        E FQL   M+ EGV  N +T+ +
Sbjct: 310 QEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMS 369

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           I   C   G  +   ++ + +      LD           +  G++   +++        
Sbjct: 370 ILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMAN-- 427

Query: 341 YGEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
               +NV    + ++MY +C DL  A  +F     +++++WN M++GY       +   L
Sbjct: 428 ----KNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFEL 483

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
              M   G +P+ VT+ +IL  C  +A L+ GK  H   ++  + ++  ++  SL+ MY+
Sbjct: 484 LSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESD-TVVATSLIGMYS 542

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           + G+V EA++VFD MS RD V + +++AGYG  G+G  A+ LF+ M K ++ P+ +T+ A
Sbjct: 543 KCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTA 602

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           V+SACS +GLV EG++ F  M   + + P+ +H+ CMVDL GRAG L +A+E I  MP  
Sbjct: 603 VISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCE 662

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638
           P  ++W  LLGAC+ H N  + E AA  +LE  P  +  Y+ ++N+YA  G WD   KVR
Sbjct: 663 PDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVR 722

Query: 639 TCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
             M D G++K  G + ++       F+ +D ++ +   I+  L  LT+ MK+AGY     
Sbjct: 723 RVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMR 782

Query: 699 F 699
           F
Sbjct: 783 F 783



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 147/555 (26%), Positives = 249/555 (44%), Gaps = 74/555 (13%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +++  +I  C K +    GK +H     LG+E +  L   L+ FY+ F    +A  +   
Sbjct: 57  NTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRR 116

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             +R  + W+ +I+ Y  +   A+A   +++M    I  +  T+ S+LKAC     ++ G
Sbjct: 117 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKG 176

Query: 195 RVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H+ + A   E  + V  AL++MY K G++ VA  +F KM ER+ VSW  +I A A  
Sbjct: 177 RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQH 236

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
               EAF+L+ +M + G+  N +T+ ++                                
Sbjct: 237 RKLNEAFELYEQMLQAGISPNAVTFVSL-------------------------------- 264

Query: 314 VIGLGACSHVGALKLGKEIHGS-AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
              L +C+   AL  G+ IH   + RG   +   V NALITMY +C  ++ A  +F   +
Sbjct: 265 ---LNSCNTPEALNRGRRIHSHISERGLETDM-IVANALITMYCKCNSVQEAREIFDRMS 320

Query: 373 EKSIITWNSML-----SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           ++ +I+W++M+     SGY   +  +E   L   M R GV PN VT  SIL  C     L
Sbjct: 321 KRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGAL 380

Query: 428 QHGKEFHCYI----------LRRAMF--------------------NEHLLLWNSLVEMY 457
           + G++ H  +          L+ A+F                    N++++ W S + MY
Sbjct: 381 EQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMY 440

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
            + G +  A+ VF  M  R+ V++  +IAGY   G+     +L   M     +PD VT++
Sbjct: 441 IKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVI 500

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
            +L AC     +  G+        + G+         ++ +Y + G + +A+ +  KM  
Sbjct: 501 TILEACGALAGLERGKLVHAEAVKL-GLESDTVVATSLIGMYSKCGQVAEARTVFDKMSN 559

Query: 578 TPTSAMWATLLGACQ 592
             T A  A L G  Q
Sbjct: 560 RDTVAWNAMLAGYGQ 574



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 219/444 (49%), Gaps = 46/444 (10%)

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLF 210
           + G   EA+ +   ++ R +  ++ TY  V++ C +    + G++VH  +D    E  ++
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + N+L++ Y KF  V  A ++F +M  RD V+W++MI+AYA      +AF  F  M +  
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           +E N IT+ +I                                   L AC++   L+ G+
Sbjct: 153 IEPNRITFLSI-----------------------------------LKACNNYSILEKGR 177

Query: 331 EIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +IH + V+    E +  V  ALITMYS+C ++  A  +F    E+++++W +++      
Sbjct: 178 KIH-TIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQH 236

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
               E+  L+ +M ++G+ PN VT  S+L  C     L  G+  H +I  R +  + +++
Sbjct: 237 RKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETD-MIV 295

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV-----ALKLFEEM 504
            N+L+ MY +   V EA+ +FD MS+RD ++++++IAGY   G           +L E M
Sbjct: 296 ANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERM 355

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            +  + P+ VT +++L AC+  G + +G +Q     S  G          + ++Y + G 
Sbjct: 356 RREGVFPNKVTFMSILRACTAHGALEQG-RQIHAELSKVGFELDRSLQTAIFNMYAKCGS 414

Query: 565 LNKAKEIITKMPYTPTSAMWATLL 588
           + +A+++ +KM      A W + L
Sbjct: 415 IYEAEQVFSKMANKNVVA-WTSFL 437


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 231/772 (29%), Positives = 372/772 (48%), Gaps = 89/772 (11%)

Query: 7   RLILNGLSVSQLE-----KFIPKKWKQPINNEHIMRINLLETLK--DFAGRGNLSKAFEA 59
           +L+ +GL V + E      F    +   +  +  M + L  + K  +F   G+L  A E 
Sbjct: 80  QLLESGLKVKEYELFSKLSFSSLAYAPALETKSYMDVELDSSRKIVEFCEVGDLKNAMEL 139

Query: 60  FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
                 ++ + +  L ++  I+  C + K++  G+++ +   + G+  + +L  KLV  Y
Sbjct: 140 LC----SSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMY 195

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYP 179
                      + +  +      WNL+IS Y   G Y E++ ++KQM    I+ +++T+ 
Sbjct: 196 VKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFS 255

Query: 180 SVLKACGEMMDVDFGRVVHSCI--------------------------------DACHEW 207
           S+LK    +  V+ GR VH  I                                D   + 
Sbjct: 256 SILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDR 315

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKML------------------------------- 236
            +   N+++S Y K G  D    +F KML                               
Sbjct: 316 DVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLH 375

Query: 237 ---------ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
                    +R+    NT++  Y+  G    A ++F  M E+     V++W ++  G +R
Sbjct: 376 SYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEK----TVVSWTSMITGYVR 431

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
            G   G ++L   M+++    D  A    L AC+  G LK GK +H             V
Sbjct: 432 EGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFV 491

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            NAL  MY++C  ++ A+ +F    +K +I+WN+M+ GYT      E+  LF EM R   
Sbjct: 492 SNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES- 550

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           +P+  T+A ILP CA +A L  G+E H Y LR   ++E   + N++V+MY + G +  A+
Sbjct: 551 KPDGTTVACILPACASLAALDKGREIHGYALRNG-YSEDKYVTNAVVDMYVKCGLLVLAR 609

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           S+FD++  +D V++T +IAGYG+ G G  A+  F +M    I+PD V+ +++L ACSHSG
Sbjct: 610 SLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSG 669

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           L+ EG K F  M     I P LEH+ACMVDL  R G L KA + I  MP  P + +W  L
Sbjct: 670 LLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGAL 729

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L  C+IH +  + E  AE++ E  PEN+GYYVL+AN+YA    W+++ K+R  +   G++
Sbjct: 730 LCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLK 789

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           K PGC+W++     + F+  D S  QA++I  LL  L   MK+ GY  K  +
Sbjct: 790 KNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAY 841


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 193/642 (30%), Positives = 351/642 (54%), Gaps = 39/642 (6%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q HA  +  G + +  +  KL+  Y++++ +N+A  ++++        ++ LI    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVH 212
            + +++ V+ +M S  +  D+   P++ K C E+     G+ +H  SC+    +   FV 
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGL-DMDAFVQ 154

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
            ++  MY + G++  AR++FD+M ++D V+ + ++ AYA KG  +E  ++  EM+  G+E
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            N+++WN I  G  R+G  K  + +  ++       D V     L +      L +G+ I
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLR-----------------HAYI--------- 366
           HG  ++    + + V +A+I MY +   +                  +AYI         
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 367 --------LFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
                   LFK  T E ++++W S+++G        E+  LFREM  +GV+PN+VTI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP C  +A L HG+  H + +R  +  +++ + ++L++MYA+ G++  ++ VF++M  ++
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLL-DNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V + SL+ G+ + G+ +  + +FE + + ++KPD ++  ++LSAC   GL  EG K F+
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
            M+  YGI P+LEH++CMV+L GRAG L +A ++I +MP+ P S +W  LL +C++  N 
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDA 657
            + E AAEKL    PEN G YVL++N+YAA G W ++  +R  M  LG++K PGC+W+  
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 658 GNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            N     L  D S+ Q  +I   +  +++ M+ +G+    +F
Sbjct: 634 KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDF 675



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 217/465 (46%), Gaps = 57/465 (12%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGL----- 105
            +++   F+R+     SH ++ DS    ++   C ++ A   GKQ+H  +   GL     
Sbjct: 97  FTQSIGVFSRM----FSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 106 --------------------------EKNPVLVPKLVTFYASFSLYNNACFLV---ENSN 136
                                     +K+ V    L+  YA          ++   E+S 
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 137 IRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           I   +  WN ++S + R G++ EA+ +++++       D  T  SVL + G+   ++ GR
Sbjct: 213 IEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272

Query: 196 VVHSCI-------DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           ++H  +       D C      V +A++ MYGK G V     LF++    +A   N  I+
Sbjct: 273 LIHGYVIKQGLLKDKC------VISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYIT 326

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
             +  GL  +A ++F   +E+ +E+NV++W +I  GC + G     LEL   M+      
Sbjct: 327 GLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKP 386

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           + V     L AC ++ AL  G+  HG AVR    +  +V +ALI MY++C  +  + I+F
Sbjct: 387 NHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVF 446

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
            M   K+++ WNS+++G++    A+E   +F  + R+ ++P++++  S+L  C +V    
Sbjct: 447 NMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
            G ++   +         L  ++ +V +  R+GK+ EA   +DL+
Sbjct: 507 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA---YDLI 548



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 123/304 (40%), Gaps = 49/304 (16%)

Query: 11  NGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAG---RGNLSKAFEAFTRIRITA 67
           NGL    LE F        +  E  M +N++      AG    G   +A E F  +++  
Sbjct: 331 NGLVDKALEMF-------ELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAG 383

Query: 68  ASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127
              + V  +   ++  CG + AL  G+  H  A+ + L  N  +   L+  YA     N 
Sbjct: 384 VKPNHV--TIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINL 441

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
           +  +      +  + WN L++ +   G   E + +++ +   R++ D  ++ S+L ACG+
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501

Query: 188 MMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWN 244
           +   D G      +   +  +  L  ++ +V++ G+ G++  A  L  +M  E D+  W 
Sbjct: 502 VGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWG 561

Query: 245 TMISA----------------------------------YASKGLWKEAFQLFVEMQEEG 270
            ++++                                  YA+KG+W E   +  +M+  G
Sbjct: 562 ALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLG 621

Query: 271 VEVN 274
           ++ N
Sbjct: 622 LKKN 625


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 225/695 (32%), Positives = 351/695 (50%), Gaps = 77/695 (11%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           K K    GK +HA  I  GL     L+  L+ FYA      +A  + +   ++    WN+
Sbjct: 25  KFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNI 84

Query: 146 LISLYVRDGFYAEA-------------------------------LCVYKQMQSRRIRGD 174
           ++S Y + G   EA                               + ++++M S  +   
Sbjct: 85  ILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPT 144

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF--VHNALVSMYGKFGQVDVARRLF 232
            FT  +VL +C  +  +  GR VHS +   H  S +  V N+L++MY K G    A+ +F
Sbjct: 145 QFTLTNVLASCAAVECLGIGRKVHSFV-VKHGLSSYISVANSLLNMYAKSGDPVTAKIVF 203

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D+M  +   SWNTMIS++   GL   A   F +M    +E +V++WN +  G  + G  +
Sbjct: 204 DRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQM----IERDVVSWNAMISGYNQHGFDR 259

Query: 293 GVLELLSRM-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
             L++ S+M     +  D       L AC+++  LKLGK+IH   +R  +  +  V NAL
Sbjct: 260 EALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNAL 319

Query: 352 ITMYSRCK---------------------------------DLRHAYILFKMTAEKSIIT 378
           I+MYS+                                   D+  A  +F     + ++ 
Sbjct: 320 ISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVA 379

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W +M+ GY      +++  LFR M + G +PN  T+A++L + + +A+L HG++ H    
Sbjct: 380 WTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASAT 439

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVA 497
           R    +  + + N+L+ MYA+SG + +A+ VF+L+  +RD +T+TS+I      G G  A
Sbjct: 440 RSGNASS-VSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEA 498

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L LFE M +N IKPDH+T V VLSAC+H GLV +G+  +  M + + I P   H+ACM+D
Sbjct: 499 LTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMID 558

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L+GRAGLL +A   I  MP  P    W +LL +C++H+N  + E AAE+LL   PENSG 
Sbjct: 559 LFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGA 618

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           Y  +AN+Y+A G W+  A +R  M+D GV+K  G +WV   N    F VDD  + Q   I
Sbjct: 619 YSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAI 678

Query: 678 YPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
           Y ++  + + +K  G+V   E      EEE+ E+I
Sbjct: 679 YEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQI 713



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 228/511 (44%), Gaps = 80/511 (15%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y S L+   +  D   G+ +H+  I A     +F+ N L++ Y K G +  A R+FD+M 
Sbjct: 16  YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMP 75

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            +   SWN ++S YA  G  +EA ++F EM E     + ++W  +  G  + G F+  + 
Sbjct: 76  VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEP----DSVSWTAMIVGYNQMGQFENAIG 131

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
           +   M + +           L +C+ V  L +G+++H   V+     Y +V N+L+ MY+
Sbjct: 132 MFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYA 191

Query: 357 RCKDLRHAYILFKMTAEKSIITWNS-------------------------------MLSG 385
           +  D   A I+F     KS  +WN+                               M+SG
Sbjct: 192 KSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISG 251

Query: 386 YTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           Y       E+  +F +M   S  +P+  T+AS L  CA + NL+ GK+ H +I+R   F+
Sbjct: 252 YNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTE-FD 310

Query: 445 EHLLLWNSLVEMYARSGKVP---------------------------------EAKSVFD 471
               + N+L+ MY++SG V                                   A+ +FD
Sbjct: 311 TFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFD 370

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +  RD V +T++I GY   G  + A++LF  M K   KP++ T+ A + + S S   ++
Sbjct: 371 SLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTL-ATMLSVSSSLASLD 429

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
             +Q     +  G    +     ++ +Y ++G +N A+ +   + +   +  W +++ A 
Sbjct: 430 HGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIAL 489

Query: 592 QIHRNTGIGEWAA---EKLLET--RPENSGY 617
             H   G+GE A    E++LE   +P++  Y
Sbjct: 490 AQH---GLGEEALTLFERMLENGIKPDHITY 517



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 183/424 (43%), Gaps = 101/424 (23%)

Query: 55  KAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAI--------ALG 104
           +A + F+++ + ++S     D F  A  +  C  ++ L  GKQ+HA  I        A+G
Sbjct: 260 EALDIFSKMLMDSSSKP---DKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVG 316

Query: 105 -------------------LEKNPVLVPKLVTFYASFSLY------NNACFLVENSNIRY 139
                              +E++ +    ++ F A    Y      N A  + ++  +R 
Sbjct: 317 NALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRD 376

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH- 198
            + W  +I  YV++GF  +A+ +++ M     + +N+T  ++L     +  +D GR +H 
Sbjct: 377 VVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHA 436

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWK 257
           S   + +  S+ V NAL++MY K G ++ AR +F+ +  +RD ++W +MI A A  GL +
Sbjct: 437 SATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGE 496

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           EA  LF  M E G++ + IT             + GV                      L
Sbjct: 497 EALTLFERMLENGIKPDHIT-------------YVGV----------------------L 521

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRN---------ALITMYSRCKDLRHAYILF 368
            AC+HVG ++ G        R  Y   +N             +I ++ R   L+ A+   
Sbjct: 522 SACTHVGLVEQG--------RSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFI 573

Query: 369 K-MTAEKSIITWNSMLSG---YTHLDCAEESA--FLFREMFRSGVEPNYVTIASILPLCA 422
           + M  E  +I W S+L+    + +++ AE +A   L  E   SG    Y  +A++   C 
Sbjct: 574 ENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGA---YSALANVYSACG 630

Query: 423 RVAN 426
           +  N
Sbjct: 631 QWEN 634


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 198/621 (31%), Positives = 321/621 (51%), Gaps = 63/621 (10%)

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
           +ENSN      WN ++  Y++     +AL +YK M    +  DN+TYP V++AC   +  
Sbjct: 101 IENSN---GFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLE 157

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ +H   +    +  ++V N L++MY   G +  AR+LFD+    D+VSWN++++ Y
Sbjct: 158 FGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGY 217

Query: 251 ASKGLWKEAFQLFVEMQEEGV---------------------------EVNVITWNTIAG 283
             KG  +EA  +F +M +  +                           E ++++W+ +  
Sbjct: 218 VKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALIS 277

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G  + G ++  L +   M      LD V  V  L AC+H+  +K GK IHG  +R     
Sbjct: 278 GYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIES 337

Query: 344 YENVRNALITMYS-------------------------------RCKDLRHAYILFKMTA 372
           Y N++NALI MYS                               +C  +  A  LF +  
Sbjct: 338 YVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMP 397

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           EK I++W++++SGY   DC  E+  LF EM    + P+   + S++  C  +A L  GK 
Sbjct: 398 EKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKW 457

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H YI R+     +++L  +L++MY + G V  A  VF+ M  +   ++ +LI G  + G
Sbjct: 458 VHAYI-RKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNG 516

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               +L +F EM  N + P+ +T + VL AC H GLV EG+  F  M   +GI P ++H+
Sbjct: 517 LVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHY 576

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CMVDL GRAGLLN+A+++I  MP  P  A W  LLGAC+ H +T +GE    KL+E +P
Sbjct: 577 GCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQP 636

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           ++ G++VL++N++A+ G W+ + +VR  M+  GV K PGC+ ++A  V   FL  D ++ 
Sbjct: 637 DHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHP 696

Query: 673 QAQEIYPLLGGLTELMKDAGY 693
              ++  +L  + + +K  GY
Sbjct: 697 WINKVEGMLNEMAKRLKMEGY 717



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 32/242 (13%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYNNA---- 128
           ++  C  +  +  GK +H   I +G+E    L   L+  Y+       +  L+N +    
Sbjct: 310 VLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLD 369

Query: 129 -------------CFLVENSNIRYP-------LPWNLLISLYVRDGFYAEALCVYKQMQS 168
                        C  VE +   +        + W+ +IS Y +   ++E L ++ +MQ 
Sbjct: 370 QISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQL 429

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDV 227
            +IR D     SV+ AC  +  +D G+ VH+ I     + ++ +   L+ MY K G V+ 
Sbjct: 430 GQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVEN 489

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A  +F+ M E+   SWN +I   A  GL + +  +F EM+  GV  N IT+  + G C  
Sbjct: 490 ALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRH 549

Query: 288 TG 289
            G
Sbjct: 550 MG 551



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 10/231 (4%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C  + AL QGK +HA     GL+ N +L   L+  Y       NA  +      + 
Sbjct: 442 VISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKG 501

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
              WN LI     +G    +L ++ +M++  +  +  T+  VL AC  M  VD GR   +
Sbjct: 502 VSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFA 561

Query: 200 CIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKG-- 254
            +   H  E ++  +  +V + G+ G ++ A +L + M +  D  +W  ++ A    G  
Sbjct: 562 SMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDT 621

Query: 255 -LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            + +   +  +E+Q +    +V+  N  A      G+++ VLE+   M+ Q
Sbjct: 622 EMGERVGRKLIELQPDHDGFHVLLSNIFAS----KGDWEDVLEVRGMMKQQ 668


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 212/634 (33%), Positives = 335/634 (52%), Gaps = 46/634 (7%)

Query: 70  HDVVLD-------SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           HD+VL        S + +I  C  ++   QG+++H   I LG + +      LV  YA  
Sbjct: 100 HDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKV 159

Query: 123 SLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
            +  +A  + +       + WN +I+  V   ++  AL + ++M    +  + FT  S L
Sbjct: 160 GILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSAL 219

Query: 183 KACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
           KAC  M   + GR +HS +      S  F+   L+ MY K   +D AR +F  M ERD +
Sbjct: 220 KACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMI 279

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           +WN +IS ++     +EA  LF  M  EG+  N  T +T+                    
Sbjct: 280 AWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTV-------------------- 319

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKD 360
                 L S+A +     C  + AL L              E++N V N+LI  Y +C  
Sbjct: 320 ------LKSIAALQANYMCRQIHALSLKSGF----------EFDNYVVNSLIDTYGKCGH 363

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           +  A  +F+ +    ++ + S+++ Y      EE+  L+ EM   G++P+    +S+L  
Sbjct: 364 VEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNA 423

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           CA ++  + GK+ H +IL+   F   +   NSLV MYA+ G + +A   F  +  R  V+
Sbjct: 424 CASLSAYEQGKQVHVHILKFG-FMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVS 482

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           ++++I G    G G+ AL+LF++M K  + P+H+T+V+VL AC+H+GLV E +  F  M 
Sbjct: 483 WSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMK 542

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
            ++GI P  EH+ACM+DL GRAG L  A E++ KMP+   + +W  LLGA +IH+N  +G
Sbjct: 543 ILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLG 602

Query: 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           E AAE LL   PE SG +VL+AN+YA+ G WDK+A+VR  M+D  V+K PG +W++  + 
Sbjct: 603 EQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDK 662

Query: 661 FSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
              F+V D S+ ++ EIY  L  L++L+K AGYV
Sbjct: 663 VYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYV 696



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 241/521 (46%), Gaps = 41/521 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C   K L  GKQ+H   +  G + +  +   LV  YA    + +A  L +  
Sbjct: 12  AFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAI 71

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN L S YV    + EA+ ++  M    IR + F+  S++  C  + D   GR
Sbjct: 72  PDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGR 131

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   I   ++   F  NALV MY K G ++ A  +FD++ + D VSWN +I+      
Sbjct: 132 KIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHE 191

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A +L  EM + G+  N+ T ++                                  
Sbjct: 192 YHHRALELLREMNKSGMCPNMFTLSS---------------------------------- 217

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +   +LG+++H S ++   G    +   LI MYS+C  +  A ++FK+  E+
Sbjct: 218 -ALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPER 276

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +I WN+++SG++  +  EE+A LF  M   G+  N  T++++L   A +      ++ H
Sbjct: 277 DMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIH 336

Query: 435 CYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
              L+    F+ +++  NSL++ Y + G V +A  VF+     D V +TSL+  Y   G+
Sbjct: 337 ALSLKSGFEFDNYVV--NSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQ 394

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  AL+L+ EM    IKPD     ++L+AC+      +G KQ       +G    +    
Sbjct: 395 GEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQG-KQVHVHILKFGFMSDIFAGN 453

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            +V++Y + G +  A    +++P     + W+ ++G    H
Sbjct: 454 SLVNMYAKCGSIEDASCAFSRIPVRGIVS-WSAMIGGLAQH 493



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 209/447 (46%), Gaps = 52/447 (11%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVAR 229
           I+ + F +PSVLKAC    D+  G+ VH  +     +   FV N+LV +Y K G    AR
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            LFD + +R  VSWN + S Y    +  EA  LF +M   G+  N  + +++   C  TG
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVC--TG 123

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                LE            DSV                 G++IHG  ++  Y       N
Sbjct: 124 -----LE------------DSVQ----------------GRKIHGYLIKLGYDSDAFSAN 150

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ MY++   L  A  +F   A+  I++WN++++G    +    +  L REM +SG+ P
Sbjct: 151 ALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCP 210

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T++S L  CA +A  + G++ H  +++  M ++   L   L++MY++   + +A+ V
Sbjct: 211 NMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDS-FLGVGLIDMYSKCNSMDDARLV 269

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F LM  RD + + ++I+G+    E   A  LF  M+   I  +  T+  VL + +     
Sbjct: 270 FKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIA----A 325

Query: 530 VEGQ---KQFERMTSIYGIFPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           ++     +Q   ++   G   + +++    ++D YG+ G +  A  +  + P      ++
Sbjct: 326 LQANYMCRQIHALSLKSGF--EFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDL-VLF 382

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETR 611
            +L+ A   +   G GE A    LE +
Sbjct: 383 TSLVTA---YAQDGQGEEALRLYLEMQ 406



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 98/199 (49%), Gaps = 21/199 (10%)

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G++ N     S+L  C    +L  GK+ H  ++    F+    + NSLV +YA+ G   +
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTG-FDSDEFVANSLVILYAKCGGFGD 63

Query: 466 AKSVFDLMSRRDEVTYTSLIAGY---GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           A+S+FD +  R  V++ +L + Y    + GE   A+ LF +M  + I+P+  ++ ++++ 
Sbjct: 64  ARSLFDAIPDRSVVSWNALFSCYVHSDMHGE---AVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEIITKMP 576
           C+     V+G+K       I+G   +L + +       +VD+Y + G+L  A  +  ++ 
Sbjct: 121 CTGLEDSVQGRK-------IHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA 173

Query: 577 YTPTSAMWATLLGACQIHR 595
             P    W  ++  C +H 
Sbjct: 174 -KPDIVSWNAIIAGCVLHE 191


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 199/644 (30%), Positives = 333/644 (51%), Gaps = 39/644 (6%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+   A E F  ++ +  S D V  + + ++  C  +  L +G QLH+     G+  + +
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCV--TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI 280

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  Y        A  +  +S+    + WNL++  + +    A++  ++ QMQ+  
Sbjct: 281 MEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG 340

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           IR + FTYP +L+ C    ++D G  +HS  +    E  ++V   L+ MY K+G ++ AR
Sbjct: 341 IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+ + + E+D                                   V++W ++  G ++  
Sbjct: 401 RVLEMLKEKD-----------------------------------VVSWTSMIAGYVQHE 425

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
             K  L     M+    + D++     +  C+ + A++ G +IH       Y    ++ N
Sbjct: 426 CCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWN 485

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ +Y+RC  +R A+  F+    K  IT N ++SG+      EE+  +F  M +SGV+ 
Sbjct: 486 ALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKH 545

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T  S L   A +A ++ GK+ H  +++     E   + N+L+ +Y + G   +AK  
Sbjct: 546 NVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKME 604

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F  MS R+EV++ ++I      G G  AL LF++M K  IKP+ VT + VL+ACSH GLV
Sbjct: 605 FSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLV 664

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG   F+ M+  YGI P+ +H+AC++D++GRAG L++AK+ I +MP    + +W TLL 
Sbjct: 665 EEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLS 724

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++H+N  +GE+AA+ LLE  P +S  YVL++N YA T  W    +VR  MRD GVRK 
Sbjct: 725 ACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKE 784

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           PG +W++  NV   F V D  +  A++IY  L  + + +   GY
Sbjct: 785 PGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 828



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 244/519 (47%), Gaps = 39/519 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            + ++  C K +  AQG+ +HA     G      +   ++T Y     +  A  +  +  
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP 205

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + +N LIS + + G    AL ++++MQ   +  D  T  S+L AC  + D+  G  
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 197 VHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +HS +  A       +  +L+ +Y K G V+ A  +F+     + V WN M+ A+     
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             ++F+LF +MQ  G+  N  T+  I    LRT                           
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCI----LRT--------------------------- 354

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
               C+    + LG++IH  +V+  +     V   LI MYS+   L  A  + +M  EK 
Sbjct: 355 ----CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKD 410

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W SM++GY   +C +++   F+EM + G+ P+ + +AS +  CA +  ++ G + H 
Sbjct: 411 VVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHA 470

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I     ++  + +WN+LV +YAR G++ EA S F+ M  +D +T   L++G+   G   
Sbjct: 471 RIYVSG-YSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHE 529

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            ALK+F  M+++ +K +  T V+ LSA ++   + +G++   R+      F + E    +
Sbjct: 530 EALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF-ETEVGNAL 588

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           + LYG+ G    AK   ++M        W T++ +C  H
Sbjct: 589 ISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQH 626



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 231/477 (48%), Gaps = 42/477 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA A+  GL K  ++   L+  Y+   L   A  + E  + R  + W  ++S Y ++G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC---IDACHEWSLFV 211
              EAL +Y+QM    +    +   SVL +C +      GR++H+       C E  +FV
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE--IFV 180

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            NA++++Y + G   +A R+F  M  RD V++NT+IS +A  G  + A ++F EMQ  G+
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             + +T +++                                   L AC+ +G L+ G +
Sbjct: 241 SPDCVTISSL-----------------------------------LAACASLGDLQKGTQ 265

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H    +        +  +L+ +Y +C D+  A ++F  +   +++ WN ML  +  ++ 
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             +S  LF +M  +G+ PN  T   IL  C     +  G++ H   ++   F   + +  
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTG-FESDMYVSG 384

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            L++MY++ G + +A+ V +++  +D V++TS+IAGY      + AL  F+EM K  I P
Sbjct: 385 VLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP 444

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           D++ + + +S C+    + +G +   R+  + G    +  +  +V+LY R G + +A
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIY-VSGYSGDVSIWNALVNLYARCGRIREA 500



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 177/381 (46%), Gaps = 38/381 (9%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            V N L+ +Y K G V  ARR+F+++  RD VSW  M+S YA  GL +EA  L+ +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           GV       +++                                   L +C+       G
Sbjct: 138 GVVPTPYVLSSV-----------------------------------LSSCTKAELFAQG 162

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           + IH    +  +     V NA+IT+Y RC   R A  +F     +  +T+N+++SG+   
Sbjct: 163 RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC 222

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              E +  +F EM  SG+ P+ VTI+S+L  CA + +LQ G + H Y+ +  + +++ ++
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDY-IM 281

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
             SL+++Y + G V  A  +F+   R + V +  ++  +G   +   + +LF +M    I
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +P+  T   +L  C+ +  +  G+ Q   ++   G    +     ++D+Y + G L KA+
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGE-QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 570 EIITKMPYTPTSAMWATLLGA 590
            ++ +M        W +++  
Sbjct: 401 RVL-EMLKEKDVVSWTSMIAG 420



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGAL-KLGKEIHGSAVRGCYGEYENVRNALI 352
           VL L +    Q   L  +     L AC   G   ++  EIH  AV    G+Y  V N LI
Sbjct: 25  VLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLI 84

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            +YS+   +  A  +F+  + +  ++W +MLSGY      EE+  L+R+M R+GV P   
Sbjct: 85  DLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPY 144

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
            ++S+L  C +      G+  H    +    +E + + N+++ +Y R G    A+ VF  
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE-IFVGNAVITLYLRCGSFRLAERVFCD 203

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  RD VT+ +LI+G+   G G  AL++FEEM  + + PD VT+ ++L+AC+  G + +G
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             Q        GI         ++DLY + G +  A  I      T    +W  +L A
Sbjct: 264 -TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNV-VLWNLMLVA 319



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 5/206 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G   +A + F R+  +   H+V   +F   +     +  + QGKQ+HA  I  G  
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVF--TFVSALSASANLAEIKQGKQIHARVIKTGHS 579

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               +   L++ Y     + +A       + R  + WN +I+   + G   EAL ++ QM
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQM 639

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNA-LVSMYGKFGQ 224
           +   I+ ++ T+  VL AC  +  V+ G     S  D         H A ++ ++G+ GQ
Sbjct: 640 KKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQ 699

Query: 225 VDVARRLFDKM-LERDAVSWNTMISA 249
           +D A++  ++M +  DA+ W T++SA
Sbjct: 700 LDRAKKFIEEMPIAADAMVWRTLLSA 725


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/648 (30%), Positives = 348/648 (53%), Gaps = 43/648 (6%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +AF+ F  +R+          +   ++  C  +  +  G+ +H   +  G E N  +V  
Sbjct: 145 EAFDLFRSMRLEGWKASQF--TLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTG 202

Query: 115 LVTFYASFSLYNNACFLVENSNI--RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
           LV  YA     + A FL +      +  + W  +++ Y ++G   +A+  ++ M ++ + 
Sbjct: 203 LVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVE 262

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRL 231
            + +T+P++L AC  ++   FG  VH  I  +    +++V +ALV MY K G +  A+ +
Sbjct: 263 CNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNM 322

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
            + M + D                                   V++WN++  G +R G  
Sbjct: 323 LETMEDDD-----------------------------------VVSWNSLMVGFVRHGLE 347

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
           +  L L   M  +   +D   T   +  C  VG++   K +HG  ++  +  Y+ V NAL
Sbjct: 348 EEALRLFKNMHGRNMKIDDY-TFPSVLNCCVVGSIN-PKSVHGLIIKTGFENYKLVSNAL 405

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           + MY++  D+  AY +F+   EK +I+W S+++GY   +  EES  +F +M  +GV P+ 
Sbjct: 406 VDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQ 465

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
             +ASIL  CA +  L+ GK+ H   ++  +      ++NSLV MYA+ G + +A ++F 
Sbjct: 466 FIVASILSACAELTLLEFGKQVHLDFIKSGL-RWSQSVYNSLVAMYAKCGCLDDADAIFV 524

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            M  +D +T+T++I GY   G+GR +LK ++ M  +  +PD +T + +L ACSH+GLV E
Sbjct: 525 SMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDE 584

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G+K F++M  +YGI P  EH+ACM+DL+GR+G L++AK+++ +M   P + +W +LL AC
Sbjct: 585 GRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSAC 644

Query: 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
           ++H N  + E AA  L E  P N+  YV+++NMY+A+  W+ +AK+R  M+  G+ K PG
Sbjct: 645 RVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPG 704

Query: 652 CAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           C+W++  +  + F+ DD  + +  EIY  +  +   +K+AGYV    F
Sbjct: 705 CSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSF 752



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 207/447 (46%), Gaps = 44/447 (9%)

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           Y + G   EA  +++ M+    +   FT  SVL+ C  +  +  G ++H   +    E +
Sbjct: 137 YCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGN 196

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDA---VSWNTMISAYASKGLWKEAFQLFVE 265
           +FV   LV MY K   V  A  LF K LE D    V W  M++ YA  G   +A + F  
Sbjct: 197 VFVVTGLVDMYAKCKCVSEAEFLF-KGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRY 255

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           M  +GVE N  T+ TI                                   L ACS V A
Sbjct: 256 MHAQGVECNQYTFPTI-----------------------------------LTACSSVLA 280

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
              G+++HG  V+  +G    V++AL+ MY++C DL++A  + +   +  +++WNS++ G
Sbjct: 281 RCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVG 340

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           +      EE+  LF+ M    ++ +  T  S+L  C  V    + K  H  I++   F  
Sbjct: 341 FVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC--VVGSINPKSVHGLIIKTG-FEN 397

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           + L+ N+LV+MYA++G +  A +VF+ M  +D +++TSL+ GY        +LK+F +M 
Sbjct: 398 YKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMR 457

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
              + PD   + ++LSAC+   L+  G KQ        G+      +  +V +Y + G L
Sbjct: 458 VTGVNPDQFIVASILSACAELTLLEFG-KQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCL 516

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQ 592
           + A  I   M         A ++G  Q
Sbjct: 517 DDADAIFVSMQVKDVITWTAIIVGYAQ 543



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 208/461 (45%), Gaps = 43/461 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G+  KA E F  +       +    +F  I+  C  V A   G+Q+H   +  G  
Sbjct: 240 YAQNGDGYKAVEFFRYMHAQGVECNQY--TFPTILTACSSVLARCFGEQVHGFIVKSGFG 297

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   LV  YA      NA  ++E       + WN L+  +VR G   EAL ++K M
Sbjct: 298 SNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNM 357

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
             R ++ D++T+PSVL  C  +  ++   V    I    E    V NALV MY K G +D
Sbjct: 358 HGRNMKIDDYTFPSVLNCC-VVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMD 416

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A  +F+KMLE+D +SW ++++ YA     +E+ ++F +M+  GV  +            
Sbjct: 417 CAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFI--------- 467

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                   VA++  L AC+ +  L+ GK++H   ++      ++
Sbjct: 468 ------------------------VASI--LSACAELTLLEFGKQVHLDFIKSGLRWSQS 501

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V N+L+ MY++C  L  A  +F     K +ITW +++ GY        S   +  M  SG
Sbjct: 502 VYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSG 561

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
             P+++T   +L  C+    +  G+++   + +          +  +++++ RSGK+ EA
Sbjct: 562 TRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEA 621

Query: 467 KSVFDLMS-RRDEVTYTSLIAG----YGIQGEGRVALKLFE 502
           K + D M  + D   + SL++       ++   R A  LFE
Sbjct: 622 KQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFE 662



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 197/394 (50%), Gaps = 29/394 (7%)

Query: 193 FGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           F R +H+   A +E S++  N L++   K GQV+ AR+LFDKM ++D  SWNTMIS+Y +
Sbjct: 50  FLRSIHTTTAASYE-SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVN 108

Query: 253 KGLWKEAFQLFVEMQEEGVEVN-VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
            G   EA +LF     +G      ITW++I  G  + G      +L   MR +       
Sbjct: 109 VGRLVEARELF-----DGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQF 163

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                L  CS +G ++ G+ IHG  V+  +     V   L+ MY++CK +  A  LFK  
Sbjct: 164 TLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGL 223

Query: 372 A--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
               K+ + W +M++GY       ++   FR M   GVE N  T  +IL  C+ V     
Sbjct: 224 EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCF 283

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G++ H +I++   F  ++ + ++LV+MYA+ G +  AK++ + M   D V++ SL+ G+ 
Sbjct: 284 GEQVHGFIVKSG-FGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFV 342

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC--------SHSGLVVEGQKQFERMTS 541
             G    AL+LF+ M+   +K D  T  +VL+ C        S  GL+++   +  ++ S
Sbjct: 343 RHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVS 402

Query: 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
                        +VD+Y + G ++ A  +  KM
Sbjct: 403 -----------NALVDMYAKTGDMDCAYTVFEKM 425


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 207/606 (34%), Positives = 319/606 (52%), Gaps = 83/606 (13%)

Query: 130 FLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLK 183
           FL E  ++   +P      WN ++S + +     EALC +  M       + +++ SVL 
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160

Query: 184 ACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS 242
           AC  + D++ G  VHS I      S +++ +ALV MY K G V+ A+R+FD+M +R+ VS
Sbjct: 161 ACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVS 220

Query: 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           WN++I+ +   G   EA  +F  M E                              SR+ 
Sbjct: 221 WNSLITCFEQNGPAVEALDVFQMMLE------------------------------SRVE 250

Query: 303 TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN---VRNALITMYSRCK 359
             E  L SV     + AC+ + A+K+G+E+HG  V+    +  N   + NA + MY++C 
Sbjct: 251 PDEVTLASV-----ISACASLSAIKVGQEVHGRVVKN--DKLRNDIILSNAFVDMYAKCS 303

Query: 360 DLRHAY-------------------------------ILFKMTAEKSIITWNSMLSGYTH 388
            ++ A                                ++F   AE+++++WN++++GYT 
Sbjct: 304 RIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQ 363

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF----- 443
               EE+  LF  + R  V P + + A+IL  CA +A L  G + H ++L+         
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGE 423

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
            + + + NSL++MY + G V E   VF  M  RD V++ ++I G+   G G  AL+LF E
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFRE 483

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M ++  KPDH+TM+ VLSAC H+G V EG+  F  MT  +G+ P  +H+ CMVDL GRAG
Sbjct: 484 MLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAG 543

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
            L +AK +I +MP  P S +W +LL AC++HRN  +G++ AEKLLE  P NSG YVL++N
Sbjct: 544 FLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSN 603

Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGG 683
           MYA  G W+ +  VR  MR  GV K PGC+W+        F+V D S+ + ++I+ LL  
Sbjct: 604 MYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDI 663

Query: 684 LTELMK 689
           L   M+
Sbjct: 664 LIAEMR 669



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 206/424 (48%), Gaps = 19/424 (4%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SFA ++  C  +  + +G Q+H+         +  +   LV  Y+     N+A  + +  
Sbjct: 154 SFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM 213

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN LI+ + ++G   EAL V++ M   R+  D  T  SV+ AC  +  +  G+
Sbjct: 214 GDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQ 273

Query: 196 VVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            VH  +    +    + + NA V MY K  ++  AR +FD M  R+ ++  +MIS YA  
Sbjct: 274 EVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMA 333

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
              K A  +F +M E     NV++WN +  G  + G  +  L L   ++ +       + 
Sbjct: 334 ASTKAARLMFTKMAER----NVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSF 389

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCY----GEYEN--VRNALITMYSRCKDLRHAYIL 367
              L AC+ +  L LG + H   ++  +    GE ++  V N+LI MY +C  +   Y++
Sbjct: 390 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLV 449

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F+   E+  ++WN+M+ G+       E+  LFREM  SG +P+++T+  +L  C     +
Sbjct: 450 FRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFV 509

Query: 428 QHGKEFHCYILRR---AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTS 483
           + G+ +   + R    A   +H   +  +V++  R+G + EAKS+ + M  + D V + S
Sbjct: 510 EEGRHYFSSMTRDFGVAPLRDH---YTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGS 566

Query: 484 LIAG 487
           L+A 
Sbjct: 567 LLAA 570



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 187/384 (48%), Gaps = 37/384 (9%)

Query: 174 DNFTYPSVLKAC-GEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
           D+  +  +L +C    +   + R VH S I +     +F+ N L+  Y K G ++  R++
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           FDKM +R+  +WN++++     G   EA  LF  M E     +  TWN++  G  +    
Sbjct: 78  FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER----DQCTWNSMVSGFAQHDRC 133

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
           +  L   + M  +   L+  +    L ACS +  +  G ++H    +  +     + +AL
Sbjct: 134 EEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSAL 193

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           + MYS+C ++  A  +F    ++++++WNS+++ +     A E+  +F+ M  S VEP+ 
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDE 253

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           VT+AS++  CA ++ ++ G+E H  +++       ++L N+ V+MYA+  ++ EA+ +FD
Sbjct: 254 VTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFD 313

Query: 472 -------------------------------LMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
                                           M+ R+ V++ +LIAGY   GE   AL L
Sbjct: 314 SMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSL 373

Query: 501 FEEMNKNQIKPDHVTMVAVLSACS 524
           F  + +  + P H +   +L AC+
Sbjct: 374 FCLLKRESVCPTHYSFANILKACA 397



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 135/261 (51%), Gaps = 7/261 (2%)

Query: 317 LGACSHVGALKLGKEIHGS-AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
           + A S  G+L+ G+++      R  Y       N+++T  ++   L  A  LF+   E+ 
Sbjct: 62  IDAYSKCGSLEDGRQVFDKMPQRNIY-----TWNSVVTGLTKLGFLDEADSLFRSMPERD 116

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
             TWNSM+SG+   D  EE+   F  M + G   N  + AS+L  C+ + ++  G + H 
Sbjct: 117 QCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHS 176

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I +    ++ + + ++LV+MY++ G V +A+ VFD M  R+ V++ SLI  +   G   
Sbjct: 177 LIAKSPFLSD-VYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAV 235

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL +F+ M +++++PD VT+ +V+SAC+    +  GQ+   R+     +   +      
Sbjct: 236 EALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAF 295

Query: 556 VDLYGRAGLLNKAKEIITKMP 576
           VD+Y +   + +A+ I   MP
Sbjct: 296 VDMYAKCSRIKEARFIFDSMP 316


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 221/655 (33%), Positives = 347/655 (52%), Gaps = 39/655 (5%)

Query: 78  AHIIFCCGKVKALAQGKQLHACAI-------------------ALGLEKNPVLV------ 112
           A + FCC + +  AQ K+LH   I                    LG  KN   V      
Sbjct: 10  AALKFCC-EARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ 68

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQM 166
           P L ++    S Y+   +L +   +   +P      WN L+S Y  +G  +E++ VY  M
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMM 128

Query: 167 -QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQ 224
            +   +  +  T+ ++L        VD GR +H  I    ++  LFV + LV MY K G 
Sbjct: 129 LKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGF 188

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           ++ A R+F+++ E++ V +NTMI+         EA QLF  M E+    + I+W TI  G
Sbjct: 189 INDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEK----DSISWTTIITG 244

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
             + G FK  ++    M  +   +D       L AC    AL  GK+IH   +R  Y + 
Sbjct: 245 LTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDN 304

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V +AL+ MY +C+++++A  +F+    K++I+W +ML GY     +EE+  +F +M R
Sbjct: 305 IFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQR 364

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           + + P+  T+ S++  CA +A+L+ G +FH   L   +    + + N+L+ +Y + G + 
Sbjct: 365 NEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLIC-FVTVSNALITLYGKCGSLE 423

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A  +F  M  RDEV++T+L++GY   G+    + LFE M  + I PD VT V VLSACS
Sbjct: 424 HAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACS 483

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
            +GLV +G   FE M   + I P  +H+ CM+DL  RAG L +AK  I +MP++P +  W
Sbjct: 484 RAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGW 543

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
           ATLL +C+++ N  IG+WAAE L +  P+N   Y+L++++YAA G WD +AK+R  MR++
Sbjct: 544 ATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREM 603

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           GV+K PG +W+   N    F  DD S+  + +IY  L  L   M + GYV    F
Sbjct: 604 GVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSF 658



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 212/451 (47%), Gaps = 39/451 (8%)

Query: 178 YPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y + LK C E  +    + +H   I        F++N L++ YGK G +  AR +FD + 
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           + +  SWNT++SAY+  G  ++  ++F  M       +V++WN++  G    G     + 
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNH----DVVSWNSLLSGYAGNGLISESVR 123

Query: 297 LLSRM-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           + + M +     L+ +     L   S+ G + LG++IHG   +  Y  Y  V + L+ MY
Sbjct: 124 VYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMY 183

Query: 356 S-------------------------------RCKDLRHAYILFKMTAEKSIITWNSMLS 384
           +                               RC+ +  A  LF    EK  I+W ++++
Sbjct: 184 AKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIIT 243

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           G T     +E+   F+EM   G   +  T  S+L  C     L  GK+ H YI+R   + 
Sbjct: 244 GLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTD-YQ 302

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
           +++ + ++L++MY +   V  A++VF  M  ++ +++T+++ GYG  G    A+++F +M
Sbjct: 303 DNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDM 362

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            +N+I PD  T+ +V+S+C++   + EG  QF       G+   +     ++ LYG+ G 
Sbjct: 363 QRNEIHPDDFTLGSVISSCANLASLEEG-AQFHGQALASGLICFVTVSNALITLYGKCGS 421

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           L  A ++  +M      +  A + G  Q  +
Sbjct: 422 LEHAHQLFHEMKIRDEVSWTALVSGYAQFGK 452



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 120/518 (23%), Positives = 227/518 (43%), Gaps = 83/518 (16%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +AG G +S++   +  + +   S ++   +F+ ++        +  G+Q+H      
Sbjct: 109 LSGYAGNGLISESVRVYNMM-LKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKF 167

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNA------------------------C-FLVENSNIR 138
           G +    +   LV  YA     N+A                        C F+VE   + 
Sbjct: 168 GYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLF 227

Query: 139 YPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
             +P      W  +I+   ++G + EA+  +K+M       D FT+ SVL ACG  + +D
Sbjct: 228 DNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALD 287

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G+ +H+  I   ++ ++FV +AL+ MY K   V  A  +F KM  ++ +SW  M+  Y 
Sbjct: 288 EGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYG 347

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G  +EA ++F +MQ   +  +  T  ++                              
Sbjct: 348 QNGYSEEAVRIFCDMQRNEIHPDDFTLGSV------------------------------ 377

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                + +C+++ +L+ G + HG A+      +  V NALIT+Y +C  L HA+ LF   
Sbjct: 378 -----ISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEM 432

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             +  ++W +++SGY     A E+  LF  M   G+ P+ VT   +L  C+R   ++ G 
Sbjct: 433 KIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGY 492

Query: 432 E-FHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSL 484
             F C      M  EH +      +  ++++ +R+G++ EAK+  + M    D + + +L
Sbjct: 493 HYFEC------MVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATL 546

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           ++   + G   +     E ++K  ++P +     +LS+
Sbjct: 547 LSSCRLNGNLEIGKWAAESLHK--LEPQNPASYILLSS 582



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 36/199 (18%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS- 468
           NY T A  L  C    N    K+ HC I+R  + N    L+N+L+  Y + G +  A++ 
Sbjct: 6   NYYTAA--LKFCCEARNRAQVKKLHCRIIR-TLTNPETFLYNNLINTYGKLGDLKNARNV 62

Query: 469 ------------------------------VFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
                                         VFD M   D V++ SL++GY   G    ++
Sbjct: 63  FDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESV 122

Query: 499 KLFEEMNKN-QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           +++  M K+  +  + +T   +L   S+ G V  G +Q       +G    L   + +VD
Sbjct: 123 RVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLG-RQIHGQIFKFGYQSYLFVGSPLVD 181

Query: 558 LYGRAGLLNKAKEIITKMP 576
           +Y + G +N A  I  ++P
Sbjct: 182 MYAKTGFINDANRIFEEIP 200


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 220/703 (31%), Positives = 353/703 (50%), Gaps = 75/703 (10%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           FAHI+    ++K    G+ +H   I  GL     L+  L+TFYA       A  + +   
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 137 IRYPLPWNLLISLYVRDG-------------------------------FYAEALCVYKQ 165
           ++    WN LIS Y + G                                +  A+ ++ +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQ 224
           M S R+    FT  +VL +C     +D GR +HS +      S + V  +L++MY K G 
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
             +A+ +FD+M  ++  +WN +IS Y   G ++ A   F +M +     ++++WN++  G
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR----DIVSWNSMISG 248

Query: 285 CLRTGNFKGVLELLSRMRTQETYL-DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
             + G     L + S+M  + +   D+      L AC+++  L +GK+IH   +R     
Sbjct: 249 YSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETET 308

Query: 344 YENVRNALITMYSRCK---------------------------------DLRHAYILFKM 370
              V NALI+MY++                                   +++ A  +F  
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             ++ ++ W +M+ GY       ++  LFR M   G EPN  T+A++L + + +  L+HG
Sbjct: 369 LRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHG 428

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE-VTYTSLIAGYG 489
           K+ H   ++ A  +    + N+L+ MYA++G +  AK VFDL + + E V++TS+I    
Sbjct: 429 KQIHASAIK-AGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALA 487

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G+ A+ LFE M    +KPDH+T V VLSAC+H GLV +G+K +  MT ++ I P L
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
            H+ACM+DLYGRAGLL +A   I  MP  P +  W +LL +C+IH+N  + + AAE+LL 
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLL 607

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             P NSG Y+ +AN+Y+A G W+  A+ R  M+D GVRK  G +W+   N    F V+D 
Sbjct: 608 IDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDV 667

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
            + Q  EIY L+  + E +K  G++   E      EEE+ E+I
Sbjct: 668 IHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQI 710



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 4/178 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++     +  L  GKQ+HA AI  G    P +   L+  YA     N A  + +  
Sbjct: 411 TLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLP 470

Query: 136 NIRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           N +  +  W  +I    + G   EA+ ++++M S  ++ D+ TY  VL AC  +  V+ G
Sbjct: 471 NGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQG 530

Query: 195 RVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
           R  ++ +   HE   +L  +  ++ +YG+ G +  A    + M +E D ++W +++++
Sbjct: 531 RKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLAS 588


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/623 (32%), Positives = 342/623 (54%), Gaps = 52/623 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL-PWNLL 146
           K L++GK++H+  +  G   +P+ +  L+  Y+  +  N A  +  +      +  +N +
Sbjct: 51  KNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAI 110

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACH 205
           IS ++ +GF  E    Y++M++  +  D FT+P  +KAC +++++   + +H  +     
Sbjct: 111 ISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGL 167

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           E  +F+ +ALV+ Y KFG ++ A+  F+++  RD                          
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRD-------------------------- 201

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVG 324
                    V+ WN +  G  + G F+ VLE   RM   E+ + S  TV G L   + +G
Sbjct: 202 ---------VVLWNAMVNGYAQIGQFEMVLETFRRM-NDESVVPSRFTVTGVLSVFAVMG 251

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L  G+ IHG A++  Y     V N+LI MY +CK +  A  +F+M  EK I +WNS++S
Sbjct: 252 DLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVS 311

Query: 385 GYTHLDCAEESAFL--FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
              H  C +    L     M  +G++P+ VT+ ++LP C+ +A L HG+E H Y++   +
Sbjct: 312 --VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGL 369

Query: 443 FNE-----HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
             +      +LL N++++MYA+ G + +A  VF+ MS +D  ++  +I GYG+ G G  A
Sbjct: 370 GKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEA 429

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L++F  M + Q+KPD VT V VLSACSH+G V +G+    +M S Y + P +EH+ C++D
Sbjct: 430 LEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVID 489

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           + GRAG L++A E+   MP      +W  LL AC++H++  + E AA+++ E  PE+ G 
Sbjct: 490 MLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGS 549

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           YVL++N+Y A G ++++ +VR  MR   VRK PGC+W++  N    F+  D ++ +A  I
Sbjct: 550 YVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSI 609

Query: 678 YPLLGGLTELMKDAGYVVKEEFC 700
           Y  L  LT  +++ GY V + FC
Sbjct: 610 YAGLNSLTARLREHGY-VPDVFC 631



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 10/187 (5%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T  + L   A   NL  GKE H Y+L     N  L +  SL+ MY++  ++  A S+
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSI-TSLINMYSKCNQMNFALSI 94

Query: 470 F-DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           F D     +   + ++I+G+   G      + +++M    + PD  T    + AC    L
Sbjct: 95  FSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC----L 150

Query: 529 VVEGQKQFERMTSIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
            V   K+   +   +G+  +L+ F  + +V+ Y + GL+  A+    ++P        A 
Sbjct: 151 DVLEIKKIHGLLFKFGL--ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAM 208

Query: 587 LLGACQI 593
           + G  QI
Sbjct: 209 VNGYAQI 215


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/609 (32%), Positives = 328/609 (53%), Gaps = 36/609 (5%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           AQ KQ+HA  + LGL+ +  L+ KL+   +SF     A  + ++       PWN +I  Y
Sbjct: 35  AQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY 94

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSL 209
            R+  + +AL +Y  MQ  R+  D+FT+P +LKAC  +  +  GR VH+ +     +  +
Sbjct: 95  SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           FV N L+++Y K  ++  AR +F                         E   L       
Sbjct: 155 FVQNGLIALYAKCRRLGSARTVF-------------------------EGLPL------- 182

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
             E  +++W  I     + G     LE+ S+MR  +   D VA V  L A + +  LK G
Sbjct: 183 -PERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           + IH S V+       ++  +L TMY++C  +  A ILF      ++I WN+M+SGY   
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
             A E+  +F EM    V P+ ++I S +  CA+V +L+  +  + Y+  R+ + + + +
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV-GRSDYRDDVFI 360

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            ++L++M+A+ G V  A+ VFD    RD V ++++I GYG+ G  R A+ L+  M +  +
Sbjct: 361 SSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGV 420

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            P+ VT + +L AC+HSG+V EG   F RM   + I PQ +H+AC++DL GRAG L++A 
Sbjct: 421 HPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAY 479

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           E+I  MP  P   +W  LL AC+ HR+  +GE+AA++L    P N+G+YV ++N+YAA  
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            WD++A+VR  M++ G+ K  GC+WV+       F V D S+ + +EI   +  +   +K
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLK 599

Query: 690 DAGYVVKEE 698
           + G+V  ++
Sbjct: 600 EGGFVANKD 608



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 126/541 (23%), Positives = 226/541 (41%), Gaps = 89/541 (16%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ ++   +   A   ++ +++   S D    +F H++  C  +  L  G+ +HA    L
Sbjct: 91  IRGYSRNNHFQDALLMYSNMQLARVSPDSF--TFPHLLKACSGLSHLQMGRFVHAQVFRL 148

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYA 157
           G + +  +   L+  YA      +A  + E      PLP      W  ++S Y ++G   
Sbjct: 149 GFDADVFVQNGLIALYAKCRRLGSARTVFEG----LPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH---EWSLFVHNA 214
           EAL ++ QM+   ++ D     SVL A   + D+  GR +H+ +       E  L +  +
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI--S 262

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L +MY K GQV  A+ LFDKM   + + WN MIS YA  G  +EA  +F EM  + V  +
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
            I+  +                                    + AC+ VG+L+  + ++ 
Sbjct: 323 TISITS-----------------------------------AISACAQVGSLEQARSMYE 347

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
              R  Y +   + +ALI M+++C  +  A ++F  T ++ ++ W++M+ GY     A E
Sbjct: 348 YVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRARE 407

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  L+R M R GV PN VT   +L  C     ++ G  F   +    + N     +  ++
Sbjct: 408 AISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKI-NPQQQHYACVI 466

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           ++  R+G + +A  V   M                                   ++P   
Sbjct: 467 DLLGRAGHLDQAYEVIKCMP----------------------------------VQPGVT 492

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
              A+LSAC     V  G+   +++ SI        H+  + +LY  A L ++  E+  +
Sbjct: 493 VWGALLSACKKHRHVELGEYAAQQLFSIDP--SNTGHYVQLSNLYAAARLWDRVAEVRVR 550

Query: 575 M 575
           M
Sbjct: 551 M 551


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 220/703 (31%), Positives = 353/703 (50%), Gaps = 75/703 (10%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           FAHI+    ++K    G+ +H   I  GL     L+  L+TFYA       A  + +   
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 137 IRYPLPWNLLISLYVRDG-------------------------------FYAEALCVYKQ 165
           ++    WN LIS Y + G                                +  A+ ++ +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQ 224
           M S R+    FT  +VL +C     +D GR +HS +      S + V  +L++MY K G 
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
             +A+ +FD+M  ++  +WN +IS Y   G ++ A   F +M +     ++++WN++  G
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR----DIVSWNSMISG 248

Query: 285 CLRTGNFKGVLELLSRMRTQETYL-DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
             + G     L + S+M  + +   D+      L AC+++  L +GK+IH   +R     
Sbjct: 249 YSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETET 308

Query: 344 YENVRNALITMYSRCK---------------------------------DLRHAYILFKM 370
              V NALI+MY++                                   +++ A  +F  
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             ++ ++ W +M+ GY       ++  LFR M   G EPN  T+A++L + + +  L+HG
Sbjct: 369 LRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHG 428

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE-VTYTSLIAGYG 489
           K+ H   ++ A  +    + N+L+ MYA++G +  AK VFDL + + E V++TS+I    
Sbjct: 429 KQIHASAIK-AGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALA 487

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G+ A+ LFE M    +KPDH+T V VLSAC+H GLV +G+K +  MT ++ I P L
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
            H+ACM+DLYGRAGLL +A   I  MP  P +  W +LL +C+IH+N  + + AAE+LL 
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLL 607

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             P NSG Y+ +AN+Y+A G W+  A+ R  M+D GVRK  G +W+   N    F V+D 
Sbjct: 608 IDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDV 667

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
            + Q  EIY L+  + E +K  G++   E      EEE+ E+I
Sbjct: 668 IHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQI 710



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 4/178 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++     +  L  GKQ+HA AI  G    P +   L+  YA     N A  + +  
Sbjct: 411 TLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLP 470

Query: 136 NIRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           N +  +  W  +I    + G   EA+ ++++M S  ++ D+ TY  VL AC  +  V+ G
Sbjct: 471 NGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQG 530

Query: 195 RVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
           R  ++ +   HE   +L  +  ++ +YG+ G +  A    + M +E D ++W +++++
Sbjct: 531 RKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLAS 588


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 229/688 (33%), Positives = 364/688 (52%), Gaps = 53/688 (7%)

Query: 33  EHIMRINLLE---TLKDFAGRGNLSKAFEAFTRI-RITAASHDVVLDSFAHIIFCCGKVK 88
           +HI R N+      +  +  RG    + +  T +  ++    D    +F  ++  C    
Sbjct: 107 KHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFY--TFPPVLKAC---L 161

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           +LA G+++H   + +G E +  +   L+  Y+ F     A  +  +  +R    WN +IS
Sbjct: 162 SLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMIS 221

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEW 207
            + ++G  AEAL V  +M++  ++ D  T  S+L  C +  DV  G +VH   I    E 
Sbjct: 222 GFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLES 281

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            +FV NAL++MY KFG++  A+R+FD M  RD VSWN++I+AY        A   F EM 
Sbjct: 282 DVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEML 341

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
             G+  +++T                              + S+A++ G      +   +
Sbjct: 342 FVGMRPDLLT------------------------------VVSLASIFG-----QLSDRR 366

Query: 328 LGKEIHGSAVRGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           +G+ +HG  VR  + E + V  NAL+ MY++   +  A  +F+    + +I+WN++++GY
Sbjct: 367 IGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGY 426

Query: 387 THLDCAEES--AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
                A E+  A+   E  R+ V PN  T  SILP  + V  LQ G + H  +++  +F 
Sbjct: 427 AQNGLASEAIDAYNMMEEGRTIV-PNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFL 485

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
           + + +   L++MY + G++ +A S+F  + +   V + ++I+  GI G G  AL+LF++M
Sbjct: 486 D-VFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDM 544

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
             + +K DH+T V++LSACSHSGLV E Q  F+ M   Y I P L+H+ CMVDL+GRAG 
Sbjct: 545 RADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGY 604

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L KA  +++ MP    +++W TLL AC+IH N  +G +A+++LLE   EN GYYVL++N+
Sbjct: 605 LEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNI 664

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA  G W+   KVR+  RD G+RK PG + V  G+V   F   + S+ Q  EIY  L  L
Sbjct: 665 YANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVL 724

Query: 685 TELMKDAGYVVKEEFC---SEEEIVEEI 709
              MK  GYV    F     EE+  EEI
Sbjct: 725 NAKMKSLGYVPDYSFVLQDVEEDEKEEI 752



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 151/527 (28%), Positives = 264/527 (50%), Gaps = 52/527 (9%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYAS---FSLYNNACFLVENSNIRYPLPWNLLISL 149
            KQLHA  + LG  ++ VL+ +LVT YA+    SL +     ++  NI     WN ++S 
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNI---FSWNSMVSA 123

Query: 150 YVRDGFYAEAL-CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
           YVR G Y +++ CV + +    +R D +T+P VLKAC  + D   G  +H   +    E 
Sbjct: 124 YVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEH 180

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            ++V  +L+ +Y +FG V+VA ++F  M  RD  SWN MIS +   G   EA ++   M+
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMK 240

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
            E V+++ +T +++   C ++ +  G                        G   H+  +K
Sbjct: 241 TEEVKMDTVTVSSMLPICAQSNDVVG------------------------GVLVHLYVIK 276

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G E   S V         V NALI MYS+   L+ A  +F     + +++WNS+++ Y 
Sbjct: 277 HGLE---SDVF--------VSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYE 325

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
             D    +   F+EM   G+ P+ +T+ S+  +  ++++ + G+  H +++R       +
Sbjct: 326 QNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDI 385

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
           ++ N+LV MYA+ G +  A++VF+ +  RD +++ +LI GY   G    A+  +  M + 
Sbjct: 386 VIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEG 445

Query: 508 Q-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
           + I P+  T V++L A SH G + +G K   R+     +F  +    C++D+YG+ G L 
Sbjct: 446 RTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIK-NCLFLDVFVATCLIDMYGKCGRLE 504

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
            A  +  ++P   TS  W  ++ +  IH   G GE A +   + R +
Sbjct: 505 DAMSLFYEIP-QETSVPWNAIISSLGIH---GHGEKALQLFKDMRAD 547



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/456 (23%), Positives = 206/456 (45%), Gaps = 72/456 (15%)

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE-EGVEV 273
           LV++Y   G + ++   F  +  ++  SWN+M+SAY  +G ++++     E+    GV  
Sbjct: 89  LVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRP 148

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           +  T+  +   CL   +                           G   H   LK+G E  
Sbjct: 149 DFYTFPPVLKACLSLAD---------------------------GEKMHCWVLKMGFE-- 179

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
                  +  Y  V  +LI +YSR   +  A+ +F     + + +WN+M+SG+       
Sbjct: 180 -------HDVY--VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  +   M    V+ + VT++S+LP+CA+  ++  G   H Y+++  + ++ + + N+L
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESD-VFVSNAL 289

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MY++ G++ +A+ VFD M  RD V++ S+IA Y    +   AL  F+EM    ++PD 
Sbjct: 290 INMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDL 349

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERM-TSIYGIFPQLEHFA-------CMVDLYGRAGLL 565
           +T+V++ S        + GQ    R+  +++G   +             +V++Y + G +
Sbjct: 350 LTVVSLAS--------IFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSI 401

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA--AEKLLE---TRPENSGYYVL 620
           + A+ +  ++P     + W TL+     +   G+   A  A  ++E   T   N G +V 
Sbjct: 402 DCARAVFEQLPSRDVIS-WNTLITG---YAQNGLASEAIDAYNMMEEGRTIVPNQGTWVS 457

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
           I   Y+  G   +  K+         R I  C ++D
Sbjct: 458 ILPAYSHVGALQQGMKIHG-------RLIKNCLFLD 486


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 195/619 (31%), Positives = 343/619 (55%), Gaps = 42/619 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  CG +     GK +H C +  GL  + V+   LV  YA  + +  A +L    
Sbjct: 108 TYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEM 167

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +    WN +IS Y + G + EAL  +  M+      ++ T  + + +C  ++D++ G 
Sbjct: 168 PEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGM 227

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   I++      F+ +ALV MYGK G +++A  +F++M ++                
Sbjct: 228 EIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKK---------------- 271

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ--ETYLDSVA 312
                               V+ WN++  G    G+    ++L  RM  +  +  L +++
Sbjct: 272 -------------------TVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLS 312

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
           ++I +  CS    L  GK +HG  +R        + ++L+ +Y +C  +  A  +FK+  
Sbjct: 313 SLIMV--CSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIP 370

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +  +++WN M+SGY       E+  LF EM +S VEP+ +T  S+L  C+++A L+ G+E
Sbjct: 371 KSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEE 430

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  I+ + + N  +++  +L++MYA+ G V EA SVF  + +RD V++TS+I  YG  G
Sbjct: 431 IHNLIIEKKLDNNEVVM-GALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHG 489

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
           +  VAL+LF EM ++ +KPD VT +A+LSAC H+GLV EG   F +M ++YGI P++EH+
Sbjct: 490 QAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHY 549

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +C++DL GRAG L++A EI+ + P       + +TL  AC++HRN  +G   A  L++  
Sbjct: 550 SCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKD 609

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P++S  Y+L++NMYA+   WD++  VR+ M++LG++K PGC+W++      PF V+D S+
Sbjct: 610 PDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSH 669

Query: 672 VQAQEIYPLLGGLTELMKD 690
           +  + ++  L  L++ M+D
Sbjct: 670 LHLELVFKCLSYLSDHMED 688



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/517 (28%), Positives = 260/517 (50%), Gaps = 47/517 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA-CFLVENSNIRYPLP 142
           C   K+L QGK +H   + LGL+ +  L   L+  Y S  LY++A C      N      
Sbjct: 13  CMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISL 72

Query: 143 WNLLISLYVRDGFYAEALCVY-KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           WN L++ Y ++  Y EAL ++ K +    ++ D++TYPSVLKACG +     G+++H+C 
Sbjct: 73  WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTC- 131

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                                        L    L  D V  ++++  YA    +++A  
Sbjct: 132 -----------------------------LVKTGLMMDIVVGSSLVGMYAKCNAFEKAIW 162

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF EM E+    +V  WNT+     ++GNFK  LE    MR      +SV     + +C+
Sbjct: 163 LFNEMPEK----DVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCA 218

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            +  L  G EIH   +   +     + +AL+ MY +C  L  A  +F+   +K+++ WNS
Sbjct: 219 RLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNS 278

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+SGY     +     LF+ M+  GV+P   T++S++ +C+R A L  GK  H Y +R  
Sbjct: 279 MISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNR 338

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           + ++ + + +SL+++Y + GKV  A+++F L+ +   V++  +I+GY  +G+   AL LF
Sbjct: 339 IQSD-VFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLF 397

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH----FACMVD 557
            EM K+ ++PD +T  +VL+ACS    + +G++    +     I  +L++       ++D
Sbjct: 398 SEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLI-----IEKKLDNNEVVMGALLD 452

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           +Y + G +++A  +   +P     + W +++ A   H
Sbjct: 453 MYAKCGAVDEAFSVFKCLPKRDLVS-WTSMITAYGSH 488



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 7/220 (3%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY---ASFSLYNNACF 130
           L + + +I  C +   L +GK +H   I   ++ +  +   L+  Y       L  N   
Sbjct: 308 LTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFK 367

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           L+  S +   + WN++IS YV +G   EAL ++ +M+   +  D  T+ SVL AC ++  
Sbjct: 368 LIPKSKV---VSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAA 424

Query: 191 VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           ++ G  +H+  I+   + +  V  AL+ MY K G VD A  +F  + +RD VSW +MI+A
Sbjct: 425 LEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITA 484

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           Y S G    A +LF EM +  ++ + +T+  I   C   G
Sbjct: 485 YGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAG 524


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/613 (32%), Positives = 329/613 (53%), Gaps = 44/613 (7%)

Query: 86  KVKALAQGKQLHACAI-ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWN 144
           ++K+ +Q KQLHA  I    L      +  +++ Y +  L + A  + +       L W 
Sbjct: 17  RIKSKSQAKQLHAQFIRTQSLSHTSASI--VISIYTNLKLLHEALLVFKTLESPPVLAWK 74

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DA 203
            +I  +     ++ AL  + +M++     D+  +PSVLK+C  MMD+ FG  VH  I   
Sbjct: 75  SVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRL 134

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             +  L+  NAL++MY K   +D  R++F+ M  +D                        
Sbjct: 135 GMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKD------------------------ 170

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD--SVATVIGLGACS 321
                      V+++NT+  G  ++G ++  L ++  M T +   D  ++++V+ + +  
Sbjct: 171 -----------VVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFS-E 218

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
           +V  LK GKEIHG  +R        + ++L+ MY++   +  +  +F     +  I+WNS
Sbjct: 219 YVDVLK-GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNS 277

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           +++GY       E+  LFR+M  + V P  V  +S++P CA +A L  GK+ H Y+LR  
Sbjct: 278 LVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 337

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            F  ++ + ++LV+MY++ G +  A+ +FD M+  DEV++T++I G+ + G G  A+ LF
Sbjct: 338 -FGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLF 396

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           EEM +  +KP+ V  VAVL+ACSH GLV E    F  MT +YG+  +LEH+A + DL GR
Sbjct: 397 EEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGR 456

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG L +A + I+KM   PT ++W+TLL +C +H+N  + E  AEK+     EN G YVL+
Sbjct: 457 AGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLM 516

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
            NMYA+ G W ++AK+R  +R  G+RK P C+W++  N    F+  D S+     I   L
Sbjct: 517 CNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFL 576

Query: 682 GGLTELMKDAGYV 694
             + E M+  GYV
Sbjct: 577 KAVMEQMEKEGYV 589



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 97/233 (41%), Gaps = 37/233 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ +I  C  +  L  GKQLH   +  G  +N  +   LV  Y+       A  + +  
Sbjct: 309 AFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRM 368

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           N+   + W  +I  +   G   EA+ ++++M+ + ++ +   + +VL AC  +  VD   
Sbjct: 369 NLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAW 428

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
              + +   +     L  + A+  + G+ G+++ A     KM +E     W+T++S+   
Sbjct: 429 GYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSV 488

Query: 250 -------------------------------YASKGLWKEAFQLFVEMQEEGV 271
                                          YAS G WKE  +L + ++++G+
Sbjct: 489 HKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGL 541


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 197/658 (29%), Positives = 335/658 (50%), Gaps = 39/658 (5%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R+     +   A  G+   A + F  ++++    D V  + A ++  C  V  L +GKQL
Sbjct: 210 RVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCV--TVASLLAACASVGDLQKGKQL 267

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H+  +  G+  + +    L+  Y        A  +    +    + WNL++  Y +    
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDL 327

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNAL 215
           A++  ++ QMQ+  I  + FTYP +L+ C     ++ G  +HS  I    E  ++V   L
Sbjct: 328 AKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVL 387

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MY K+G +D AR++ + + +RD VSW +MI+ Y      +EA                
Sbjct: 388 IDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA---------------- 431

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
                              L     M+    + D++       AC+ + A++ G +IH  
Sbjct: 432 -------------------LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
                Y    ++ N L+ +Y+RC     A+ LF+    K  ITWN ++SG+      +++
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQA 532

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             +F +M ++G + N  T  S +   A +A+++ GK+ H   ++    +E  +  N+L+ 
Sbjct: 533 LMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA-NALIS 591

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           +Y + G + +AK +F  MS R+EV++ ++I      G G  AL LF++M +  +KP+ VT
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVT 651

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            + VL+ACSH GLV EG   F+ M+++YG+ P  +H+AC+VD+ GRAG L++A+  + +M
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEM 711

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P T  + +W TLL AC++H+N  IGE AA+ LLE  P +S  YVL++N YA TG W    
Sbjct: 712 PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRD 771

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           +VR  M+D G+RK PG +W++  N    F V D  +  + +IY  L  L + +   GY
Sbjct: 772 QVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGY 829



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 144/559 (25%), Positives = 259/559 (46%), Gaps = 43/559 (7%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAA-SHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           ++ +  L  +A  G   +AF  ++++  TA      VL S   ++  C K K  AQG+ +
Sbjct: 110 VSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSS---VLSACTKGKLFAQGRMI 166

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           HA            +   L+  Y  F  +  A  +  +      + +N LIS + + G  
Sbjct: 167 HAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHG 226

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNAL 215
             AL ++ +MQ   +R D  T  S+L AC  + D+  G+ +HS  + A   +      +L
Sbjct: 227 ECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSL 286

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + +Y K G ++ A  +F+     + V WN M+ AY       ++F++F +MQ  G+  N 
Sbjct: 287 LDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQ 346

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            T+  I    LRT                               C+  G ++LG++IH  
Sbjct: 347 FTYPCI----LRT-------------------------------CTCTGQIELGEQIHSL 371

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           +++  +     V   LI MYS+   L  A  + +M  ++ +++W SM++GY   D  EE+
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
              F+EM   GV P+ + +AS    CA +  ++ G + H  +     +   + +WN+LV 
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSG-YAADISIWNTLVN 490

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           +YAR G+  EA S+F  +  +DE+T+  LI+G+G     + AL +F +M +   K +  T
Sbjct: 491 LYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFT 550

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            ++ +SA ++   + +G++   R     G   + E    ++ LYG+ G +  AK I ++M
Sbjct: 551 FISAISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISLYGKCGSIEDAKMIFSEM 609

Query: 576 PYTPTSAMWATLLGACQIH 594
                   W T++ +C  H
Sbjct: 610 SLR-NEVSWNTIITSCSQH 627



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 222/486 (45%), Gaps = 42/486 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA ++  GL  + ++   L+  YA   L   A  + +  + R  + W  ++S Y + G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA---CHEWSLFV 211
              EA  +Y QM    +    +   SVL AC +      GR++H+ +     C E   FV
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSE--TFV 181

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            NAL+++Y  FG   +A R+F  ML  D                                
Sbjct: 182 GNALIALYLGFGSFKLAERVFCDMLFCDR------------------------------- 210

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
               +T+NT+  G  + G+ +  L++   M+      D V     L AC+ VG L+ GK+
Sbjct: 211 ----VTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQ 266

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H   ++           +L+ +Y +C D+  A+ +F +    +++ WN ML  Y  +  
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             +S  +F +M  +G+ PN  T   IL  C     ++ G++ H   ++   F   + +  
Sbjct: 327 LAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNG-FESDMYVSG 385

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            L++MY++ G + +A+ + +++ +RD V++TS+IAGY        AL  F+EM    + P
Sbjct: 386 VLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP 445

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D++ + +  SAC+    + +G +   R+  + G    +  +  +V+LY R G   +A  +
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYARCGRSEEAFSL 504

Query: 572 ITKMPY 577
             ++ +
Sbjct: 505 FREIEH 510


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 196/656 (29%), Positives = 349/656 (53%), Gaps = 52/656 (7%)

Query: 33  EHIMRINLLE---TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           EH+   NL+     +  F+  G L ++F AF  + +   S    + +   ++  C   + 
Sbjct: 160 EHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEED 219

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           + +G  +H  A+ LGL +  ++   L+  Y+     + A  L + ++ +  + WN +I  
Sbjct: 220 IEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGG 279

Query: 150 YVRDGFYAEALCVYKQMQSR--RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW 207
           Y R+        + ++MQ+   +++ D FT  +VL  C E  ++   + +H      + W
Sbjct: 280 YAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHG-----YSW 334

Query: 208 ------SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                 +  V NA ++ Y + G +  + R+FD M  +   SWN ++  YA     ++A  
Sbjct: 335 RHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALD 394

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           L+++M + G++ +   W TI    L                                ACS
Sbjct: 395 LYLQMTDSGLDPD---WFTIGSLLL--------------------------------ACS 419

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            + +L  G+EIHG A+R        +  +L+++Y  C     A +LF     +S+++WN 
Sbjct: 420 RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNV 479

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M++GY+     +E+  LFR+M   G++P  + I  +   C++++ L+ GKE HC+ L+ A
Sbjct: 480 MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALK-A 538

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
              E + + +S+++MYA+ G +  ++ +FD +  +D  ++  +IAGYGI G G+ AL+LF
Sbjct: 539 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELF 598

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           E+M +  +KPD  T   +L ACSH+GLV +G + F +M +++ I P+LEH+ C+VD+ GR
Sbjct: 599 EKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGR 658

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG ++ A  +I +MP  P S +W++LL +C+IH N G+GE  A KLLE  PE    YVLI
Sbjct: 659 AGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLI 718

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           +N++A +G WD + +VR  M+D+G++K  GC+W++ G     FL+ D    + +E+
Sbjct: 719 SNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEV 774



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 231/447 (51%), Gaps = 41/447 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNP-VLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           CG+ K +  G++LH    A     N  VL  +++T Y+     +++  + +    +    
Sbjct: 8   CGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQ 67

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           WN ++S Y R+  + +A+ ++ ++ S    + DNFT P V+KAC  ++D+  G+++H   
Sbjct: 68  WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 127

Query: 202 DACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
                 S +FV NAL++MYGK G V+ A ++F+ M ER+ VSWN++I  ++  G  +E+F
Sbjct: 128 TKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESF 187

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGA 319
             F EM                                  +  +E+++  VAT++  L  
Sbjct: 188 NAFREM----------------------------------LVGEESFVPDVATLVTVLPV 213

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+    ++ G  +HG AV+    E   V N+LI MYS+C+ L  A +LF    +K+I++W
Sbjct: 214 CAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSW 273

Query: 380 NSMLSGYTHLDCAEESAFLFREMF--RSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           NSM+ GY   +    + +L ++M    + ++ +  TI ++LP+C   + LQ  KE H Y 
Sbjct: 274 NSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYS 333

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
            R  + +  L+  N+ +  Y R G +  ++ VFDLM  +   ++ +L+ GY    + R A
Sbjct: 334 WRHGLQSNELVA-NAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKA 392

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACS 524
           L L+ +M  + + PD  T+ ++L ACS
Sbjct: 393 LDLYLQMTDSGLDPDWFTIGSLLLACS 419



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 133/531 (25%), Positives = 235/531 (44%), Gaps = 46/531 (8%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C  +  L  G+ +H  A  + L  +  +   L+  Y    L   A  + E+   R 
Sbjct: 107 VIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERN 166

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
            + WN +I  +  +GF  E+   +++M         D  T  +VL  C    D++ G  V
Sbjct: 167 LVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAV 226

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H   +       L V+N+L+ MY K   +  A+ LFDK  ++                  
Sbjct: 227 HGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKK------------------ 268

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL--DSVATV 314
                            N+++WN++ GG  R  +      LL +M+T++  +  D    +
Sbjct: 269 -----------------NIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTIL 311

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L  C     L+  KE+HG + R      E V NA I  Y+RC  L  +  +F +   K
Sbjct: 312 NVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTK 371

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++ +WN++L GY       ++  L+ +M  SG++P++ TI S+L  C+R+ +L +G+E H
Sbjct: 372 TVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIH 431

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            + LR  +  +   +  SL+ +Y   GK   A+ +FD M  R  V++  +IAGY   G  
Sbjct: 432 GFALRNGLAVDP-FIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLP 490

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             A+ LF +M  + I+P  + ++ V  ACS    +  G K+         +   +   + 
Sbjct: 491 DEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG-KELHCFALKAHLTEDIFVSSS 549

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
           ++D+Y + G +  ++ I  ++      A W  ++    IH   G G+ A E
Sbjct: 550 IIDMYAKGGCIGLSQRIFDRLREKDV-ASWNVIIAGYGIH---GRGKEALE 596



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 196/414 (47%), Gaps = 43/414 (10%)

Query: 181 VLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHNA-LVSMYGKFGQVDVARRLFDKMLER 238
           +L+ACG+  D++ GR +H  + A  ++ + FV N  +++MY   G    +R +FDK+  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           +   WN ++SAY    L+++A  +F E+                                
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSEL-------------------------------- 91

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
             +   E   D+      + AC+ +  L LG+ IHG A +        V NALI MY +C
Sbjct: 92  --ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKC 149

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF--RSGVEPNYVTIAS 416
             +  A  +F+   E+++++WNS++ G++     +ES   FREM        P+  T+ +
Sbjct: 150 GLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVT 209

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +LP+CA   +++ G   H   ++  + NE L++ NSL++MY++   + EA+ +FD   ++
Sbjct: 210 VLPVCAGEEDIEKGMAVHGLAVKLGL-NEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKK 268

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN--QIKPDHVTMVAVLSACSHSGLVVEGQK 534
           + V++ S+I GY  + +      L ++M     ++K D  T++ VL  C      ++  K
Sbjct: 269 NIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERS-ELQSLK 327

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           +    +  +G+          +  Y R G L  ++ +   M  T T + W  LL
Sbjct: 328 ELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMD-TKTVSSWNALL 380



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 141/286 (49%), Gaps = 23/286 (8%)

Query: 317 LGACSHVGALKLGKEIH---GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           L AC     +++G+ +H    ++ + C     N R  +ITMYS C     + ++F     
Sbjct: 5   LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTR--IITMYSMCGSPSDSRMVFDKLRR 62

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKE 432
           K++  WN+++S YT  +  E++  +F E+   +  +P+  T+  ++  CA + +L  G+ 
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H    +  + ++ + + N+L+ MY + G V EA  VF+ M  R+ V++ S+I G+   G
Sbjct: 123 IHGMATKMDLVSD-VFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENG 181

Query: 493 EGRVALKLFEEM--NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL- 549
             + +   F EM   +    PD  T+V VL  C+       G++  E+  +++G+  +L 
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLPVCA-------GEEDIEKGMAVHGLAVKLG 234

Query: 550 --EHFAC---MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             E       ++D+Y +   L++A+ +  K       + W +++G 
Sbjct: 235 LNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS-WNSMIGG 279


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 206/686 (30%), Positives = 350/686 (51%), Gaps = 69/686 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C   + + +G++L+   +  G + +  +   L+  +       +A  + +N 
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +I+   R G + +A  ++++M+   ++ D   + S+L+AC     ++ G+
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGK 332

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+ + +   +  ++V  A++SMY K G ++ A  +FD +  R+ VSW  MI+ +A  G
Sbjct: 333 KVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHG 392

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGC--------------------------LRT 288
              EAF  F +M E G+E N +T+ +I G C                          +RT
Sbjct: 393 RIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRT 452

Query: 289 ---------GNFKGVLELLSRMRTQ---------------ETYLDSVATVIGL------- 317
                    G+ K    +  ++  Q               E Y +++AT   L       
Sbjct: 453 ALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP 512

Query: 318 ---------GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                      C    +L+LGK +H   ++       +V NAL++M+  C DL  A  LF
Sbjct: 513 NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               ++ +++WN++++G+      + +   F+ M  SG++P+ +T   +L  CA    L 
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALT 632

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G+  H  I   A F+  +L+   L+ MY + G + +A  VF  + +++  ++TS+IAGY
Sbjct: 633 EGRRLHALITE-AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGY 691

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G G+ AL+LF +M +  +KPD +T V  LSAC+H+GL+ EG   F+ M   + I P+
Sbjct: 692 AQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPR 750

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH+ CMVDL+GRAGLLN+A E I KM   P S +W  LLGACQ+H N  + E AA+K L
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKL 810

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P ++G +V+++N+YAA G W ++AK+R  M D GV K PG +W++       F  DD
Sbjct: 811 ELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDD 870

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYV 694
            ++ Q +EI+  L  L   M+  GYV
Sbjct: 871 KTHPQTEEIHAELERLHMEMRQLGYV 896



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/553 (26%), Positives = 266/553 (48%), Gaps = 43/553 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASH-DVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           L   +  G  ++A +   R+    +SH  +   +++ ++  C K K L  G++++     
Sbjct: 82  LNRLSKAGQFNEAMQVLERVD---SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            G++ +  +   L+  YA      +A  + ++   +    WNLL+  YV+ G Y EA  +
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGK 221
           ++QM    ++ D  T+ S+L AC +  +VD GR +++ I  A  +  LFV  AL++M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  A ++FD +  RD V+W +MI+  A  G +K+A  LF  M+EEGV+         
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP-------- 310

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                      D VA V  L AC+H  AL+ GK++H       +
Sbjct: 311 ---------------------------DKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V  A+++MY++C  +  A  +F +   +++++W +M++G+      +E+   F +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG+EPN VT  SIL  C+  + L+ G++   +I+  A +     +  +L+ MYA+ G
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII-EAGYGSDDRVRTALLSMYAKCG 462

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + +A  VF+ +S+++ V + ++I  Y    +   AL  F+ + K  IKP+  T  ++L+
Sbjct: 463 SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILN 522

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
            C  S  +  G K    +    G+   L     +V ++   G L  AK +   MP     
Sbjct: 523 VCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLV 581

Query: 582 AMWATLLGACQIH 594
           + W T++     H
Sbjct: 582 S-WNTIIAGFVQH 593



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 234/493 (47%), Gaps = 42/493 (8%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           ++I+     N +++   + G + EA+ V +++ S  I+    TY ++L+ C +  ++  G
Sbjct: 70  ADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDG 129

Query: 195 RVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             +++ I     +  +F+ N L++MY K G    A+++FD M E+D  SWN ++  Y   
Sbjct: 130 ERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           GL++EAF+L  +M ++ V+ +  T+ ++                                
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSM-------------------------------- 217

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC+    +  G+E++   ++  +     V  ALI M+ +C D+  A  +F     
Sbjct: 218 ---LNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPT 274

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + ++TW SM++G       +++  LF+ M   GV+P+ V   S+L  C     L+ GK+ 
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H   ++   ++  + +  +++ MY + G + +A  VFDL+  R+ V++T++IAG+   G 
Sbjct: 335 HAR-MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGR 393

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK-QFERMTSIYGIFPQLEHF 552
              A   F +M ++ I+P+ VT +++L ACS    +  GQ+ Q   + + YG   ++   
Sbjct: 394 IDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR-- 451

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL-ETR 611
             ++ +Y + G L  A  +  K+      A W  ++ A   H          + LL E  
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVA-WNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 612 PENSGYYVLIANM 624
             NS  +  I N+
Sbjct: 511 KPNSSTFTSILNV 523


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 214/670 (31%), Positives = 346/670 (51%), Gaps = 45/670 (6%)

Query: 28  QPINNEHIMRINLL--ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCG 85
           +PI+     ++N+L    LK FA   +L KA + F R+R      + V+ +F +++  CG
Sbjct: 93  EPIDK----KLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEV--EPVVYNFTYLLKVCG 146

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
               L  GK++H   +  G   +   +  L   YA     + A  + +    R  + WN 
Sbjct: 147 DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNT 206

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           +++ Y ++G    AL +   M    ++    T  SVL A   +  +  G+ +H   + A 
Sbjct: 207 IVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAG 266

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            +  + +  ALV MY K G +  AR LFD MLER                          
Sbjct: 267 FDSLVNIATALVDMYAKCGSLKTARLLFDGMLER-------------------------- 300

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
                    NV++WN++    ++  N K  + +  +M  +      V+ +  L AC+ +G
Sbjct: 301 ---------NVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLG 351

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L+ G+ IH  +V        +V N+LI+MY +CK++  A  +F     ++I++WN+M+ 
Sbjct: 352 DLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMIL 411

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           G+       E+   F +M    V+P+  T  S++   A ++   H K  H  ++R  + +
Sbjct: 412 GFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCL-D 470

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
           +++ +  +LV+MYA+ G +  A+ +FD+MS R   T+ ++I GYG  G G+ AL+LFEEM
Sbjct: 471 KNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEM 530

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            K  I+P+ VT ++V+SACSHSGLV  G K F  M   Y I P ++H+  MVDL GRAG 
Sbjct: 531 QKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGR 590

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           LN+A + I +MP  P   ++  +LGACQIH+N    E  AE+L E  PE+ GY+VL+AN+
Sbjct: 591 LNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANI 650

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           Y A   W+K+ +VR  M   G+RK PGC+ V+  N    F    T++  +++IY  L  L
Sbjct: 651 YRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKL 710

Query: 685 TELMKDAGYV 694
              +K+AGYV
Sbjct: 711 ICQIKEAGYV 720



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/525 (24%), Positives = 245/525 (46%), Gaps = 47/525 (8%)

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL +  +   KLV+ +  +   + A  + E  + +  + +  ++  + +     +AL  +
Sbjct: 64  GLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFF 123

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            +M+   +    + +  +LK CG+  ++  G+ +H   + +     LF    L +MY K 
Sbjct: 124 VRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC 183

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            QV  AR++FD+M ERD VSWNT+++ Y+  G+ + A ++   M EE ++ + IT  ++ 
Sbjct: 184 RQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSV- 242

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L A S +  +++GKEIHG A+R  + 
Sbjct: 243 ----------------------------------LPAVSALRLIRIGKEIHGYAMRAGFD 268

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
              N+  AL+ MY++C  L+ A +LF    E+++++WNSM+  Y   +  +E+  +F++M
Sbjct: 269 SLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKM 328

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              GV+P  V++   L  CA + +L+ G+  H   +   + + ++ + NSL+ MY +  +
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELEL-DRNVSVVNSLISMYCKCKE 387

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           V  A S+F  +  R  V++ ++I G+   G    AL  F +M    +KPD  T V+V++A
Sbjct: 388 VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITA 447

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
            +    +    K    +     +   +     +VD+Y + G +  A+ I   M     + 
Sbjct: 448 IAELS-ITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLE-----TRPENSGYYVLIA 622
            W  ++     H   GIG+ A E   E      RP    +  +I+
Sbjct: 507 -WNAMIDGYGTH---GIGKAALELFEEMQKGTIRPNGVTFLSVIS 547



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 9/191 (4%)

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           A +L  C+ +  L+H       I +  ++ EHL     LV ++ R G V EA  VF+ + 
Sbjct: 41  ALLLERCSSLKELRHILPL---IFKNGLYQEHLF-QTKLVSLFCRYGSVDEAARVFEPID 96

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           ++  V Y +++ G+    +   ALK F  M  ++++P       +L  C     +  G K
Sbjct: 97  KKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVG-K 155

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           +   +    G    L     + ++Y +   +++A+++  +MP     + W T++     +
Sbjct: 156 EIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVS-WNTIVAG---Y 211

Query: 595 RNTGIGEWAAE 605
              G+   A E
Sbjct: 212 SQNGMARMALE 222


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 204/618 (33%), Positives = 334/618 (54%), Gaps = 16/618 (2%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---SFSLYNNACFLVENSNIRYPLPWN 144
           K+  QG Q+HA  I  GL      + +L++F++   S    +++  L    +      WN
Sbjct: 20  KSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWN 79

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRG-DNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
            +I  Y R     EA+ +Y  M ++ I   +NFT+P +L +C  +  ++ G  VHS  I 
Sbjct: 80  TMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIK 139

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              E  LFV NAL+ +Y  FG +++AR LFD+ L RD VS+NTMI  YA     + A  L
Sbjct: 140 HGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCL 199

Query: 263 FVEMQEEGVEVNVITWNTIAGGC--LRTGNFKGVL--ELLSRMRTQETYLDSVATVIGLG 318
           F EMQ  G+  +  T+  +   C  L   N    +  ++   +R+ ++ +   + ++ + 
Sbjct: 200 FGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMY 259

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           A    G + + + +  +       +     ++++  Y+RC ++  A  LF    E+ +I+
Sbjct: 260 A--KCGLINIAERVFSTMGTS---KSAAAWSSMVCGYARCGEINVARKLFNHMHERDVIS 314

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W +M+SGY+      E+  LF+EM   G++P+ VT+ ++L  CAR+     GK  +   +
Sbjct: 315 WTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYI 374

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--RDEVTYTSLIAGYGIQGEGRV 496
              +FN++ +L  ++++MYA+ G +  A  +F  + +  +    + S+IAG    G G  
Sbjct: 375 ENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGET 434

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A+ +F E+    +KPD VT V VL AC HSGL+ EG+K FE M + YGI PQ+EH+ CMV
Sbjct: 435 AITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMV 494

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GR G L +A +++ KMP+   S +W  LL AC+ H N  IGE A +KLLE   ++  
Sbjct: 495 DLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGA 554

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YVL++N+ A    W++  +VR  M D G+RK PG ++++ G     F+  D S+ Q +E
Sbjct: 555 RYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKE 614

Query: 677 IYPLLGGLTELMKDAGYV 694
           I  +L  +   +K AGYV
Sbjct: 615 IELMLKDMAMRLKSAGYV 632



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 210/439 (47%), Gaps = 30/439 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C ++ +L  G ++H+  I  G E +  +   L+  Y+ F   N A  L + S
Sbjct: 113 TFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDES 172

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R  + +N +I  Y        ALC++ +MQ+  I  D FT+ ++   C  + + + G+
Sbjct: 173 LVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGK 232

Query: 196 VVHS-------CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMI 247
            +H+        ID+    ++ + +A+V MY K G +++A R+F  M   + A +W++M+
Sbjct: 233 QIHAQVYKNLRSIDS----NILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV 288

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
             YA  G    A +LF  M E     +VI+W  +  G  + G     LEL   M      
Sbjct: 289 CGYARCGEINVARKLFNHMHER----DVISWTAMISGYSQAGQCSEALELFKEMEALGIK 344

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYI 366
            D V  V  L AC+ +GA  LGK ++   +  G + +   +  A++ MY++C  +  A  
Sbjct: 345 PDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALE 404

Query: 367 LFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
           +F+   +  K+   +NSM++G       E +  +FRE+  +G++P+ VT   +L  C   
Sbjct: 405 IFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHS 464

Query: 425 ANLQHGKE-----FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDE 478
             ++ GK+     F+ Y ++  M  EH   +  +V++  R G + EA  +   M    + 
Sbjct: 465 GLIEEGKKLFESMFNAYGIKPQM--EH---YGCMVDLLGRYGCLEEAYDLVQKMPFEANS 519

Query: 479 VTYTSLIAGYGIQGEGRVA 497
           V + +L++     G  ++ 
Sbjct: 520 VIWRALLSACRTHGNVKIG 538


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 210/637 (32%), Positives = 345/637 (54%), Gaps = 46/637 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  I+  C    +L  GK++H C   +G E +  +   LV  Y+ + + + A  +  + 
Sbjct: 126 TFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDM 182

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            ++    WN +IS + ++G  A AL V  +M+   ++ D  T  S+L  C +  DV  G 
Sbjct: 183 PVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV 242

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ++H   +    +  +FV NAL++MY KFG++  A+ +FD+M  RD VSWN++I+AY    
Sbjct: 243 LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNN 302

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A + F  MQ  G+  +++T  ++               + S++  Q          
Sbjct: 303 DPSTALRFFKGMQLGGIRPDLLTVVSLT-------------SIFSQLSDQ---------- 339

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAE 373
                       ++ + I G  +R  + + + V  NAL+ MY++   +  A+ +F     
Sbjct: 340 ------------RISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPR 387

Query: 374 KSIITWNSMLSGYTHLDCAEES--AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           K  I+WN++++GYT    A E+  A+   E  R  + PN  T  SI+P  + V  LQ G 
Sbjct: 388 KDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PNQGTWVSIIPAYSHVGALQQGM 446

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  +++ +++ + + +   L+++Y + G++ +A S+F  + R   V + ++IA  GI 
Sbjct: 447 KIHAKLIKNSLYLD-VFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIH 505

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G  AL+LF++M   ++K DH+T V++LSACSHSGLV EGQK F+ M   YGI P L+H
Sbjct: 506 GRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKH 565

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + CMVDL GRAG L KA E++  MP  P +++W  LL AC+I+ N  +G  A+++LLE  
Sbjct: 566 YGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVD 625

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
            EN GYYVL++N+YA T  W+ + KVR+  RD G+RK PG + V  G+    F   + ++
Sbjct: 626 SENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTH 685

Query: 672 VQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
            +  EIY  L  L+  MK  GYV    F  ++  +EE
Sbjct: 686 PKYTEIYKELKVLSAKMKSLGYVPDYSFVYQD--IEE 720



 Score =  212 bits (540), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 161/567 (28%), Positives = 274/567 (48%), Gaps = 69/567 (12%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           +L K+   F +   T+   D     F  +   C  V A    K+LHA  +  G  +N VL
Sbjct: 3   SLLKSVSKFYKSATTSLHKDA---DFNALFNSCVNVNAT---KKLHALLLVFGKSQNIVL 56

Query: 112 VPKLVTFYAS---FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             KL+  Y +    SL  +    +   NI     WN +IS YVR G Y EA+    Q+ S
Sbjct: 57  STKLINLYVTHGDISLSRSTFDYIHKKNI---FSWNSIISAYVRFGKYHEAMNCVNQLFS 113

Query: 169 R----RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
                 +R D +T+P +LKAC  ++D   G+ VH C+     E  +FV  +LV +Y ++G
Sbjct: 114 MCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +DVA ++F  M  +D  SWN MIS +   G    A  +   M+ EGV+++ IT  +I  
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
            C ++ +                       VI  G   H+  LK G +   S V      
Sbjct: 231 VCAQSDD-----------------------VIN-GVLIHLHVLKHGLD---SDVF----- 258

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V NALI MYS+   L+ A ++F     + +++WNS+++ Y   +    +   F+ M 
Sbjct: 259 ---VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
             G+ P+ +T+ S+  + +++++ +  +    +++RR   ++ +++ N+LV MYA+ G +
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYM 375

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQIKPDHVTMVAVLSA 522
             A +VFD + R+D +++ +L+ GY   G    A+  +  M +     P+  T V+++ A
Sbjct: 376 NCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPA 435

Query: 523 CSHSGLVVEGQKQFERM--TSIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYT 578
            SH G + +G K   ++   S+Y     L+ F   C++DLYG+ G L  A  +  ++P  
Sbjct: 436 YSHVGALQQGMKIHAKLIKNSLY-----LDVFVATCLIDLYGKCGRLEDAMSLFYEIP-R 489

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAE 605
            TS  W  ++ +  IH   G GE A +
Sbjct: 490 DTSVPWNAIIASLGIH---GRGEEALQ 513



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/456 (23%), Positives = 195/456 (42%), Gaps = 43/456 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   GN + A     R++      D +  + A I+  C +   +  G  +H   +  GL+
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTI--TVASILPVCAQSDDVINGVLIHLHVLKHGLD 254

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L+  Y+ F    +A  + +   +R  + WN +I+ Y ++   + AL  +K M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW---SLFVHNALVSMYGKFG 223
           Q   IR D  T  S+     ++ D    R +   +    EW    + + NALV+MY K G
Sbjct: 315 QLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFV-IRREWLDKDVVIGNALVNMYAKLG 373

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE-EGVEVNVITWNTIA 282
            ++ A  +FD++  +D +SWNT+++ Y   GL  EA   +  M+E      N  TW +I 
Sbjct: 374 YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSI- 432

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             + A SHVGAL+ G +IH   ++    
Sbjct: 433 ----------------------------------IPAYSHVGALQQGMKIHAKLIKNSLY 458

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V   LI +Y +C  L  A  LF      + + WN++++        EE+  LF++M
Sbjct: 459 LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
               V+ +++T  S+L  C+    +  G++    + +       L  +  +V++  R+G 
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGY 578

Query: 463 VPEA-KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           + +A + V ++  + D   + +L++   I G   + 
Sbjct: 579 LEKAYELVRNMPIQPDASIWGALLSACKIYGNAELG 614


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 206/658 (31%), Positives = 339/658 (51%), Gaps = 43/658 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +A  G+  K  + F +++           + + ++  C    +L +GK LHA A+  
Sbjct: 23  LNGYAQLGDGKKVLKLFCKMKECETKFSKF--TLSTVLKGCANTGSLREGKVLHALALRS 80

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISLYVRDGFYAEALC 161
           G E +  L   LV  Y+      +A  L   + IR P  + W+ +I+   + G   EA  
Sbjct: 81  GCEIDEFLGCSLVDMYSKCGTVYDA--LKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAE 138

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYG 220
           ++  M+ +  R + FT  S++     M D+ +G+ +H CI     E    V N L+ MY 
Sbjct: 139 LFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYM 198

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K   V+   ++F+ M   D VSWN ++S +          ++F +M  EG + N+ T+ +
Sbjct: 199 KSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFIS 258

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +                                   L +CS +   + GK++H   ++  
Sbjct: 259 V-----------------------------------LRSCSSLLDPEFGKQVHAHIIKNS 283

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
             + + V  AL+ MY++ + L  A + F     + I +W  ++SGY   D AE++   FR
Sbjct: 284 SDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFR 343

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M R G++PN  T+AS L  C+ +A L++G++ H   ++   F + + + ++LV++Y + 
Sbjct: 344 QMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGD-IFVGSALVDLYGKC 402

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G +  A+++F  +  RD V++ ++I+GY   G+G  AL+ F  M    I PD  T + VL
Sbjct: 403 GCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVL 462

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           SACS  GLV EG+K+F+ M+ IYGI P +EH+ACMVD+ GRAG  N+ K  I +M  TP 
Sbjct: 463 SACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPY 522

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           S +W T+LGAC++H N   GE AA+KL E  P     Y+L++N++A+ G WD +  +R  
Sbjct: 523 SLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRAL 582

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
           M   G++K PGC+WV+       FL  D S+ + +EIY  L  L + +   GYV K E
Sbjct: 583 MTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTE 640



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 220/466 (47%), Gaps = 42/466 (9%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN L++ Y + G   + L ++ +M+    +   FT  +VLK C     +  G+V+H+ 
Sbjct: 17  VSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHAL 76

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            + +  E   F+  +LV MY K G V  A ++F K+   D V+W+ MI+    +G  +EA
Sbjct: 77  ALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEA 136

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF  M+ +G   N  T +++                            S AT      
Sbjct: 137 AELFHLMRRKGARPNQFTLSSLV---------------------------STAT------ 163

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
             ++G L+ G+ IHG   +  +     V N LI MY + + +     +F+      +++W
Sbjct: 164 --NMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSW 221

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N++LSG+           +F +M   G +PN  T  S+L  C+ + + + GK+ H +I++
Sbjct: 222 NALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIK 281

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
            +  ++   +  +LV+MYA++  + +A   FD +  RD  ++T +I+GY    +   A+K
Sbjct: 282 NSS-DDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVK 340

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            F +M +  IKP+  T+ + LS CSH    +E  +Q   +    G F  +   + +VDLY
Sbjct: 341 YFRQMQREGIKPNEYTLASCLSGCSHMA-TLENGRQLHAVAVKAGHFGDIFVGSALVDLY 399

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
           G+ G +  A E I K   +     W T++     H   G GE A E
Sbjct: 400 GKCGCMEHA-EAIFKGLISRDIVSWNTIISGYSQH---GQGEKALE 441



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 163/347 (46%), Gaps = 43/347 (12%)

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +++A RLF  M E++ VSWN +++ YA  G  K+  +LF +M+E   + +  T +T+  G
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           C  TG+ +                         G   H  AL+ G EI      GC    
Sbjct: 61  CANTGSLRE------------------------GKVLHALALRSGCEI--DEFLGC---- 90

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
                +L+ MYS+C  +  A  +F       ++ W++M++G       +E+A LF  M R
Sbjct: 91  -----SLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRR 145

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G  PN  T++S++     + +L++G+  H  I +   F    L+ N L+ MY +S  V 
Sbjct: 146 KGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYG-FESDNLVSNPLIMMYMKSRCVE 204

Query: 465 EAKSVFDLMSRRDEVTYTSLIAG-YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           +   VF+ M+  D V++ +L++G Y  Q  GR   ++F +M     KP+  T ++VL +C
Sbjct: 205 DGNKVFEAMTNPDLVSWNALLSGFYDSQTCGR-GPRIFYQMLLEGFKPNMFTFISVLRSC 263

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHF--ACMVDLYGRAGLLNKA 568
           S S L  E  KQ      I       + F    +VD+Y +A  L  A
Sbjct: 264 S-SLLDPEFGKQVH--AHIIKNSSDDDDFVGTALVDMYAKARCLEDA 307



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 11/171 (6%)

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ +F  M  ++ V++ +L+ GY   G+G+  LKLF +M + + K    T+  VL  C++
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           +G + EG K    +    G   +++ F    +VD+Y + G +  A ++ TK+   P    
Sbjct: 64  TGSLREG-KVLHALALRSGC--EIDEFLGCSLVDMYSKCGTVYDALKVFTKI-RNPDVVA 119

Query: 584 WATLLGACQIHRNTGIGEWAAE--KLLETRPENSGYYVLIANMYAATGCWD 632
           W+ ++         G G+ AAE   L+  +      + L + +  AT   D
Sbjct: 120 WSAMITGLD---QQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGD 167


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 215/678 (31%), Positives = 350/678 (51%), Gaps = 46/678 (6%)

Query: 51   GNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108
            G+L    E F  +        VV DS  ++  +  C +V  +  G ++H C I  G + +
Sbjct: 653  GSLHIVLEVFKELH----GKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLD 708

Query: 109  PVLVPKLVTFYASFSLYNNACFLVENSNIRY---PLP----WNLLISLYVRDGFYAEALC 161
              L   L+ FY         C+ +E +N  +   P P    WN  I L ++     + + 
Sbjct: 709  VYLRCALMNFYGR-------CWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVE 761

Query: 162  VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYG 220
            ++++MQ   ++ +  T   VL+ACG+M  ++  + +H  +     +  + + N L+SMY 
Sbjct: 762  LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYS 821

Query: 221  KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
            K G++++ARR+FD M  R+  SWN+MIS+YA+ G   +A+ LF E++   ++ +++TWN 
Sbjct: 822  KNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNC 881

Query: 281  IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
            +  G    G  + VL +L RM+ +    +S +    L A S +G L +GKE HG  +R  
Sbjct: 882  LLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNG 941

Query: 341  YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
            +     V  +LI MY +   L  A  +F     ++I  WNS++SGY+     E++  L  
Sbjct: 942  FDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLN 1001

Query: 401  EMFRSGVEPNYVT------------------------IASILPLCARVANLQHGKEFHCY 436
            +M + G++P+ VT                        I  +L  CA ++ LQ GKE HC 
Sbjct: 1002 QMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCL 1061

Query: 437  ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
             +R   F E + +  +L++MY++S  +  A  VF  +  +   ++  +I G+ I G G+ 
Sbjct: 1062 SIRNG-FIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKE 1120

Query: 497  ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
            A+ +F EM K  + PD +T  A+LSAC +SGL+ EG K F+ M + Y I P+LEH+ CMV
Sbjct: 1121 AISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMV 1180

Query: 557  DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
            DL GRAG L++A ++I  MP  P + +W  LLG+C+IH+N    E AA+ L +  P NS 
Sbjct: 1181 DLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSA 1240

Query: 617  YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
             Y+L+ N+Y+    W+ +  +R  M   GVR     +W+        F  D+  +  A +
Sbjct: 1241 NYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGK 1300

Query: 677  IYPLLGGLTELMKDAGYV 694
            IY  L  L   MK  GYV
Sbjct: 1301 IYFELYQLVSEMKKLGYV 1318


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 210/637 (32%), Positives = 345/637 (54%), Gaps = 46/637 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  I+  C    +L  GK++H C   +G E +  +   LV  Y+ + + + A  +  + 
Sbjct: 126 TFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDM 182

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            ++    WN +IS + ++G  A AL V  +M+   ++ D  T  S+L  C +  DV  G 
Sbjct: 183 PVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV 242

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ++H   +    +  +FV NAL++MY KFG++  A+ +FD+M  RD VSWN++I+AY    
Sbjct: 243 LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNN 302

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A + F  MQ  G+  +++T  ++               + S++  Q          
Sbjct: 303 DPSTALRFFKGMQLGGIRPDLLTVVSLTS-------------IFSQLSDQ---------- 339

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAE 373
                       ++ + I G  +R  + + + V  NAL+ MY++   +  A+ +F     
Sbjct: 340 ------------RISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPR 387

Query: 374 KSIITWNSMLSGYTHLDCAEES--AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           K  I+WN++++GYT    A E+  A+   E  R  + PN  T  SI+P  + V  LQ G 
Sbjct: 388 KDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PNQGTWVSIIPAYSHVGALQQGM 446

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  +++ +++ + + +   L+++Y + G++ +A S+F  + R   V + ++IA  GI 
Sbjct: 447 KIHAKLIKNSLYLD-VFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIH 505

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G  AL+LF++M   ++K DH+T V++LSACSHSGLV EGQK F+ M   YGI P L+H
Sbjct: 506 GRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKH 565

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + CMVDL GRAG L KA E++  MP  P +++W  LL AC+I+ N  +G  A+++LLE  
Sbjct: 566 YGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVD 625

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
            EN GYYVL++N+YA T  W+ + KVR+  RD G+RK PG + V  G+    F   + ++
Sbjct: 626 SENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTH 685

Query: 672 VQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
            +  EIY  L  L+  MK  GYV    F  ++  +EE
Sbjct: 686 PKYTEIYKELKVLSAKMKSLGYVPDYSFVYQD--IEE 720



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 161/567 (28%), Positives = 274/567 (48%), Gaps = 69/567 (12%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           +L K+   F +   T+   D     F  +   C  V A    K+LHA  +  G  +N VL
Sbjct: 3   SLLKSVSKFYKSATTSLHKDA---DFNALFNSCVNVNAT---KKLHALLLVFGKSQNIVL 56

Query: 112 VPKLVTFYAS---FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             KL+  Y +    SL  +    +   NI     WN +IS YVR G Y EA+    Q+ S
Sbjct: 57  STKLINLYVTHGDISLSRSTFDYIHKKNI---FSWNSIISAYVRFGKYHEAMNCVNQLFS 113

Query: 169 R----RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
                 +R D +T+P +LKAC  ++D   G+ VH C+     E  +FV  +LV +Y ++G
Sbjct: 114 MCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +DVA ++F  M  +D  SWN MIS +   G    A  +   M+ EGV+++ IT  +I  
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
            C ++ +                       VI  G   H+  LK G +   S V      
Sbjct: 231 VCAQSDD-----------------------VIN-GVLIHLHVLKHGLD---SDVF----- 258

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V NALI MYS+   L+ A ++F     + +++WNS+++ Y   +    +   F+ M 
Sbjct: 259 ---VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
             G+ P+ +T+ S+  + +++++ +  +    +++RR   ++ +++ N+LV MYA+ G +
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYM 375

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQIKPDHVTMVAVLSA 522
             A +VFD + R+D +++ +L+ GY   G    A+  +  M +     P+  T V+++ A
Sbjct: 376 NCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPA 435

Query: 523 CSHSGLVVEGQKQFERM--TSIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYT 578
            SH G + +G K   ++   S+Y     L+ F   C++DLYG+ G L  A  +  ++P  
Sbjct: 436 YSHVGALQQGMKIHAKLIKNSLY-----LDVFVATCLIDLYGKCGRLEDAMSLFYEIP-R 489

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAE 605
            TS  W  ++ +  IH   G GE A +
Sbjct: 490 DTSVPWNAIIASLGIH---GRGEEALQ 513



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/456 (23%), Positives = 195/456 (42%), Gaps = 43/456 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   GN + A     R++      D +  + A I+  C +   +  G  +H   +  GL+
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTI--TVASILPVCAQSDDVINGVLIHLHVLKHGLD 254

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L+  Y+ F    +A  + +   +R  + WN +I+ Y ++   + AL  +K M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW---SLFVHNALVSMYGKFG 223
           Q   IR D  T  S+     ++ D    R +   +    EW    + + NALV+MY K G
Sbjct: 315 QLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFV-IRREWLDKDVVIGNALVNMYAKLG 373

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE-EGVEVNVITWNTIA 282
            ++ A  +FD++  +D +SWNT+++ Y   GL  EA   +  M+E      N  TW +I 
Sbjct: 374 YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSI- 432

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             + A SHVGAL+ G +IH   ++    
Sbjct: 433 ----------------------------------IPAYSHVGALQQGMKIHAKLIKNSLY 458

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V   LI +Y +C  L  A  LF      + + WN++++        EE+  LF++M
Sbjct: 459 LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
               V+ +++T  S+L  C+    +  G++    + +       L  +  +V++  R+G 
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGY 578

Query: 463 VPEA-KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           + +A + V ++  + D   + +L++   I G   + 
Sbjct: 579 LEKAYELVRNMPIQPDASIWGALLSACKIYGNAELG 614


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 220/698 (31%), Positives = 345/698 (49%), Gaps = 88/698 (12%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF---- 130
           D FA ++         + G+ +HA A+  GL  +  L   L+++YA   +    CF    
Sbjct: 26  DHFARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGV-GRGCFHEAR 84

Query: 131 -LVENSNI--RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR----------------- 170
            L ++     R    WN L+S+Y + G  A+A  V+ QM  R                  
Sbjct: 85  RLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRF 144

Query: 171 --------------IRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-----DACHEWSLFV 211
                         +    F   +VL +C        GR VHS +      +C    + V
Sbjct: 145 WDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSC----VPV 200

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N+++ MYGK G  + AR +F++M  R   SWN M+S Y  +G    A  +F  M+E   
Sbjct: 201 ANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEER-- 258

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGK 330
             ++++WN I  G  + G     L+  SRM T  +      TV   L AC+++  LK+GK
Sbjct: 259 --SIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGK 316

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCK------------------------------- 359
           ++H   +R        + NALI+ Y++                                 
Sbjct: 317 QMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVK 376

Query: 360 --DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
             D + A  +F +   + +I W +M+ GY      +E+  LFR M RSG EPN  T+A++
Sbjct: 377 LGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAV 436

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RR 476
           L  CA +A L +GK+ HC  +R ++  + + + N+++ +YARSG VP A+ VFD +  R+
Sbjct: 437 LSACASLAYLGYGKQIHCRAIR-SLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRK 495

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           + VT+TS+I      G G  A+ LFEEM +  +KPD VT + V SAC+H+G + +G++ +
Sbjct: 496 ETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYY 555

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           E+M + +GI P++ H+ACMVDL  RAGLL +A E I +MP  P + +W +LL AC++ +N
Sbjct: 556 EQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKN 615

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             + E AAEKLL   P+NSG Y  +AN+Y+A G W+  A++    +D  V+K  G +W  
Sbjct: 616 ADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTH 675

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             +    F  DD  + Q   I      + E +K AG+V
Sbjct: 676 VQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFV 713


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 225/622 (36%), Positives = 327/622 (52%), Gaps = 46/622 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV--PKLVTFYASFSLYNNACFLVE 133
           SF   +  C  +K L   KQ+HA  I      +  L    +L    A     +    L  
Sbjct: 24  SFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSL 80

Query: 134 NSNIRYP-LP-WNLLI-SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
            + +R P LP +N +I  L   +    E L VYKQM S+ I  DN+T P VLKAC E   
Sbjct: 81  LAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRA 140

Query: 191 VDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           V  G  VH   I       ++V N L+ MY     +  AR++FD   +RD VSW TMI  
Sbjct: 141 VREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMI-- 198

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
                      Q +V+M                 G  R G     + L   M  +    D
Sbjct: 199 -----------QGYVKM-----------------GFAREG-----VGLFFEMCGENLQAD 225

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKDLRHAYILF 368
            +  VI L +C+ +G L+LG+++H   +R      +  V NAL+ MY +C D   A  +F
Sbjct: 226 GMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVF 285

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
           +    K++++WNSM+SG       +ES ++FR+M R GV+P+ VT+ ++L  CA +  L+
Sbjct: 286 QEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLE 345

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GK  H Y L R        + N+LV+MYA+ G + +A  VF  M+R+D  +YT++I G 
Sbjct: 346 LGKWVHAY-LDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGL 404

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            + G+G  AL LF EM K  I+PD VT V VL+ACSH GLV EG+K FE M++IY + PQ
Sbjct: 405 AMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQ 464

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           LEH+ CMVDL GRAGL+N+A+E I  MP  P + +   LLGAC+IH    +GE   +K+ 
Sbjct: 465 LEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIE 524

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           +  P   G YVL++N+Y++   W    K+R  M++  + K PGC+ ++   V   F   D
Sbjct: 525 KIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGD 584

Query: 669 TSNVQAQEIYPLLGGLTELMKD 690
            S+ + +EIY LL  +   +K+
Sbjct: 585 KSHPKIKEIYKLLDEIMSHLKN 606



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 222/469 (47%), Gaps = 52/469 (11%)

Query: 69  SHDVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN 126
           S  +V D++    ++  C + +A+ +G+++H  AI +GL  +  +   L+  YA   +  
Sbjct: 118 SKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIR 177

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
           +A  + + S  R  + W  +I  YV+ GF  E + ++ +M    ++ D  T   VL +C 
Sbjct: 178 SARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCA 237

Query: 187 EMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
            + D+  GR +H  I  ++     +FV NALV MY K G  + AR++F +M  ++ VSWN
Sbjct: 238 RLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWN 297

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           +MIS  A KG +KE+  +F +MQ  GV+                                
Sbjct: 298 SMISGLAQKGQFKESLYMFRKMQRLGVKP------------------------------- 326

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
               D V  V  L +C+++G L+LGK +H    R        + NAL+ MY++C  +  A
Sbjct: 327 ----DDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQA 382

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F+    K + ++ +M+ G        ++  LF EM + G+EP+ VT   +L  C+ V
Sbjct: 383 CWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHV 442

Query: 425 ANLQHGKEFH-----CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDE 478
             ++ G+++       Y LR  +  EH   +  +V++  R+G + EA+     M    D 
Sbjct: 443 GLVEEGRKYFEDMSTIYNLRPQL--EH---YGCMVDLLGRAGLINEAEEFIRNMPIEPDA 497

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSH 525
               +L+    I G+  +   + +++ K + + D  +V M  + S+ + 
Sbjct: 498 FVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANR 546



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 97/264 (36%), Gaps = 41/264 (15%)

Query: 47  FAGRGNLSKAFEAFTRI-RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
            A +G   ++   F ++ R+     DV L     ++  C  +  L  GK +HA      +
Sbjct: 303 LAQKGQFKESLYMFRKMQRLGVKPDDVTL---VAVLNSCANLGVLELGKWVHAYLDRNQI 359

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             +  +   LV  YA     + AC++ +  N +    +  +I      G   +AL ++ +
Sbjct: 360 RADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSE 419

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFG 223
           M    I  D  T+  VL AC  +  V+ GR     +   +     L  +  +V + G+ G
Sbjct: 420 MPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAG 479

Query: 224 QVDVARRLFDKM-LERDAVSWNTMISA--------------------------------- 249
            ++ A      M +E DA     ++ A                                 
Sbjct: 480 LINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSN 539

Query: 250 -YASKGLWKEAFQLFVEMQEEGVE 272
            Y+S   W++A +L   M+E  +E
Sbjct: 540 IYSSANRWRDALKLRKTMKERNLE 563


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  355 bits (910), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 198/606 (32%), Positives = 338/606 (55%), Gaps = 37/606 (6%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L   K +HA  + LGL+++  L+ K++ F  +F   N +  +++ +       +N +I  
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
            V +  + E++ +Y  M+   +  D+FT+P VLKAC  ++D + G  +HS  + A  E  
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
            FV  +L+++Y K G +D A ++FD + +++  SW   IS Y   G  +EA  +F  + E
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLE 202

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
            G+  +  +   +   C RTG+          +R+ E ++D   T  G+           
Sbjct: 203 MGLRPDSFSLVEVLSACKRTGD----------LRSGE-WIDEYITENGM----------- 240

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
                   VR  +     V  AL+  Y +C ++  A  +F    EK+I++W+SM+ GY  
Sbjct: 241 --------VRNVF-----VATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYAS 287

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               +E+  LF +M   G++P+   +  +L  CAR+  L+ G ++   ++    F ++ +
Sbjct: 288 NGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELG-DWASNLINGNEFLDNSV 346

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           L  +L++MYA+ G++  A  VF  M ++D V + + I+G  + G  + AL LF +M K+ 
Sbjct: 347 LGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSG 406

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           IKPD  T V +L AC+H+GLV EG++ F  M  ++ + P++EH+ CMVDL GRAG L++A
Sbjct: 407 IKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEA 466

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
            ++I  MP    + +W  LLG C++HR+T + E   +KL+   P +SG YVL++N+YAA+
Sbjct: 467 HQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAAS 526

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
             W++ AK+R+ M + GV+KIPG +W++   V   FLV DTS+  +++IY  LG L + +
Sbjct: 527 HKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDL 586

Query: 689 KDAGYV 694
           K AGYV
Sbjct: 587 KAAGYV 592



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 196/437 (44%), Gaps = 39/437 (8%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112
             ++ E +  +R    S D    +F  ++  C +V     G ++H+  +  G E +  + 
Sbjct: 89  FQESIEIYHSMRKEGLSPDSF--TFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVK 146

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
             L+  Y      +NA  + ++   +    W   IS YV  G   EA+ +++++    +R
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRL 231
            D+F+   VL AC    D+  G  +   I +     ++FV  ALV  YGK G ++ AR +
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSV 266

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           FD MLE++ VSW++MI  YAS GL KEA  LF +M  EG++                   
Sbjct: 267 FDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKP------------------ 308

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
                            D  A V  L +C+ +GAL+LG           + +   +  AL
Sbjct: 309 -----------------DCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTAL 351

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           I MY++C  +  A+ +F+   +K  + WN+ +SG       +++  LF +M +SG++P+ 
Sbjct: 352 IDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDR 411

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            T   +L  C     ++ G+ +   +         +  +  +V++  R+G + EA  +  
Sbjct: 412 NTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIK 471

Query: 472 LMS-RRDEVTYTSLIAG 487
            M    + + + +L+ G
Sbjct: 472 SMPMEANAIVWGALLGG 488


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 200/596 (33%), Positives = 318/596 (53%), Gaps = 41/596 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S   ++  CG  +    G  +HA A+ +GL     L   LV  Y  F     +  + +  
Sbjct: 43  SLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGM 102

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN  I  ++  GFY + L ++++M    +   + T  S+L A  E+   D GR
Sbjct: 103 LEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGR 162

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   I    +  +FV N+LV MY KFG ++                            
Sbjct: 163 EVHGYSIKRAMDLDIFVANSLVDMYAKFGSLE---------------------------- 194

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              +A  +F +M++     NV++WN +    ++ G       L++ M+      +S+  V
Sbjct: 195 ---KASTIFEQMKDR----NVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLV 247

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ + +LK+GK+IH  ++R        + NALI MYS+C  L  A  +F+  +EK
Sbjct: 248 NVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFE-RSEK 306

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             +++N+++ GY+      ES  LF++M   G++ + V+    L  C  ++  +HGKE H
Sbjct: 307 DDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIH 366

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
           C ++RR + + H  L NSL+++Y + G +  A  +F+ ++++D  ++ ++I GYG+ G+ 
Sbjct: 367 CVLVRR-LLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQI 425

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
            +A +LFE M  + +  DHV+ +AVL+ACSH GLV +G+K F +M +   I PQ  H+AC
Sbjct: 426 DIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVA-QNIEPQQMHYAC 484

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL GRAG L+K  EII  MP+   S +W  LLGAC+IH N  + +WAAE L E +PE+
Sbjct: 485 MVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEH 544

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV--DAGNVFSPFLVDD 668
           SGYY L+ NMYA TG W++  K+R  M+   V+K P  +WV    GN    FLV D
Sbjct: 545 SGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 600



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 163/340 (47%), Gaps = 37/340 (10%)

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M ERD VSWN+++SA+   G++ +A +  V M   G  +NV                   
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVA------------------ 42

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
                          S+ +V+   AC      K G  IH  AV+       N+ NAL+ M
Sbjct: 43  ---------------SLVSVV--PACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDM 85

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +  D+  +  +F    E++ ++WNS +  + +     +   +FR+M    V P  +T+
Sbjct: 86  YGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITL 145

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           +S+LP    + +   G+E H Y ++RAM +  + + NSLV+MYA+ G + +A ++F+ M 
Sbjct: 146 SSLLPALVELGSFDLGREVHGYSIKRAM-DLDIFVANSLVDMYAKFGSLEKASTIFEQMK 204

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            R+ V++ ++IA     G    A +L  +M K+   P+ +T+V VL AC+    +  G K
Sbjct: 205 DRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMG-K 263

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           Q    +   G+   L     ++D+Y + G L+ A+ I  +
Sbjct: 264 QIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER 303


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 190/576 (32%), Positives = 317/576 (55%), Gaps = 39/576 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           CG +  L+ G+ LH  A+  G+    ++V  L + Y+   +  +AC L      +  + W
Sbjct: 231 CGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSW 290

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-D 202
             LI  Y R G   EA+ ++++M+   ++ D      VL   G   +V+ G+  H+ I  
Sbjct: 291 TGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIR 350

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                S+ + N+L+SMYGKF  VDVA  +F  + +RD  SW+ M++ Y   GL  +  +L
Sbjct: 351 RNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLEL 410

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL-DSVATVIGLGACS 321
           + +MQ                                  R  + +L D  + V  + +CS
Sbjct: 411 YRQMQ---------------------------------CRDHDEFLCDITSLVSAISSCS 437

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA-EKSIITWN 380
            +G L+LG+ +H  +++ C  +  ++ N+LI MY RC +   A  +F +    + ++TWN
Sbjct: 438 RLGRLRLGQSVHCYSIK-CLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWN 496

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           +++S Y+H+  + ++  L+ +M    V+PN  T+ +++  CA +A L+HG+  H Y+ + 
Sbjct: 497 ALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYV-KN 555

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
                 + +  +LV+MY + G++  A+ +FD M +RD VT+  +I+GYG+ GE   ALKL
Sbjct: 556 MGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKL 615

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F EM    IKP+ +T +A+LSAC H+GLV EG+K F RM   Y + P L+H+ACMVDL G
Sbjct: 616 FSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLFIRMGG-YRLEPNLKHYACMVDLLG 674

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           ++GLL +A++++  MP  P   +W TLL AC++H N  +G   A+K   + P N GYY+L
Sbjct: 675 KSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSSDPRNDGYYIL 734

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
           ++N Y +   WD++ K+R  M++ GV K  G + VD
Sbjct: 735 MSNSYGSAEKWDEIEKLRDTMKNYGVEKGVGWSAVD 770



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 144/535 (26%), Positives = 239/535 (44%), Gaps = 42/535 (7%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           +LHA A   GL   P    KLV+ Y+S  L   A      S       WN L+  +    
Sbjct: 33  RLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCAS 92

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNA 214
            +  AL  +++M++   R   FT P    A  E+  +  G  VHS            ++ 
Sbjct: 93  DFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHS------------YSV 140

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
              +    G V V+               ++++  YA  G   +A +LF EM    VE +
Sbjct: 141 KFGLLAGDGSVAVS---------------SSLVYMYARCGSLGDAVKLFDEM----VERD 181

Query: 275 VITWNTIAGGCLRTGNF-KGVLELLSRMR---TQETYLDSVATVIGLGACSHVGALKLGK 330
           V+ W  +  GC+R G   KG+  L+  +R         +S     GL AC  +G L  G+
Sbjct: 182 VVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGR 241

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
            +HG AV+    +   V +AL +MYS+C     A ILF    EK +++W  ++  Y    
Sbjct: 242 CLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRG 301

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
            A E+  LF+EM +SG++P+ V ++ +L      AN+  GK FH  I+RR  F + +L+ 
Sbjct: 302 LAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRN-FGDSVLIA 360

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM---NKN 507
           NSL+ MY +   V  A +VF ++ +RD+ +++ ++AGY   G     L+L+ +M   + +
Sbjct: 361 NSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHD 420

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
           +   D  ++V+ +S+CS  G +  GQ       SI  +  +      ++ +YGR G    
Sbjct: 421 EFLCDITSLVSAISSCSRLGRLRLGQSV--HCYSIKCLLDENSITNSLIGMYGRCGNFEL 478

Query: 568 AKEIITKMPYTPTSAMWATLLGA-CQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           A +I            W  L+ +   + R+        + L E    NS   + +
Sbjct: 479 ACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITV 533



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 41/217 (18%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C  + AL  G+ LH+    +GLE +  +   LV  Y        A  + ++   R 
Sbjct: 533 VISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRD 592

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN++IS Y   G   +AL ++ +M++  I+ ++ T+ ++L AC              
Sbjct: 593 VVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSAC-------------- 638

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM----LERDAVSWNTMISAYASKGL 255
               CH                 G VD  R+LF +M    LE +   +  M+      GL
Sbjct: 639 ----CHA----------------GLVDEGRKLFIRMGGYRLEPNLKHYACMVDLLGKSGL 678

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
            +EA  L + M    ++ +   W T+   C    NF+
Sbjct: 679 LQEAEDLVLAMP---IKPDGGVWGTLLSACKVHDNFE 712


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 205/686 (29%), Positives = 349/686 (50%), Gaps = 69/686 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C   + + +G++L+   +  G + +  +   L+  +       +A  + +N 
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +I+   R G + +A  ++++M+   ++ D   + S+L+AC     ++ G+
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGK 332

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+ + +   +  ++V  A++SMY K G ++ A  +FD +  R+ VSW  MI+ +A  G
Sbjct: 333 KVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHG 392

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGC--------------------------LRT 288
              EAF  F +M E G+E N +T+ +I G C                          +RT
Sbjct: 393 RIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRT 452

Query: 289 ---------GNFKGVLELLSRMRTQ---------------ETYLDSVATVIGL------- 317
                    G+ K    +  ++  Q               E Y +++AT   L       
Sbjct: 453 ALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP 512

Query: 318 ---------GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                      C    +L+LGK +H   ++       +V NAL++M+  C DL  A  LF
Sbjct: 513 NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               ++ +++WN++++G+      + +   F+ M  SG++P+ +T   +L  CA    L 
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALT 632

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G+  H  I   A F+  +L+   L+ MY + G + +A  VF  + +++  ++TS+I GY
Sbjct: 633 EGRRLHALITE-AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGY 691

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G G+ AL+LF +M +  +KPD +T V  LSAC+H+GL+ EG   F+ M   + I P+
Sbjct: 692 AQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPR 750

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH+ CMVDL+GRAGLLN+A E I KM   P S +W  LLGACQ+H N  + E AA+K L
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKL 810

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P ++G +V+++N+YAA G W ++AK+R  M D GV K PG +W++       F  DD
Sbjct: 811 ELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDD 870

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYV 694
            ++ Q +EI+  L  L   M+  GYV
Sbjct: 871 KTHPQTEEIHAELERLHMEMRQLGYV 896



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/553 (26%), Positives = 266/553 (48%), Gaps = 43/553 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASH-DVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           L   +  G  ++A +   R+    +SH  +   +++ ++  C K K L  G++++     
Sbjct: 82  LNRLSKAGQFNEAMQVLERVD---SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            G++ +  +   L+  YA      +A  + ++   +    WNLL+  YV+ G Y EA  +
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGK 221
           ++QM    ++ D  T+ S+L AC +  +VD GR +++ I  A  +  LFV  AL++M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  A ++FD +  RD V+W +MI+  A  G +K+A  LF  M+EEGV+         
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP-------- 310

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                      D VA V  L AC+H  AL+ GK++H       +
Sbjct: 311 ---------------------------DKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V  A+++MY++C  +  A  +F +   +++++W +M++G+      +E+   F +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG+EPN VT  SIL  C+  + L+ G++   +I+  A +     +  +L+ MYA+ G
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII-EAGYGSDDRVRTALLSMYAKCG 462

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + +A  VF+ +S+++ V + ++I  Y    +   AL  F+ + K  IKP+  T  ++L+
Sbjct: 463 SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILN 522

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
            C  S  +  G K    +    G+   L     +V ++   G L  AK +   MP     
Sbjct: 523 VCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLV 581

Query: 582 AMWATLLGACQIH 594
           + W T++     H
Sbjct: 582 S-WNTIIAGFVQH 593



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 234/493 (47%), Gaps = 42/493 (8%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           ++I+     N +++   + G + EA+ V +++ S  I+    TY ++L+ C +  ++  G
Sbjct: 70  ADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDG 129

Query: 195 RVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             +++ I     +  +F+ N L++MY K G    A+++FD M E+D  SWN ++  Y   
Sbjct: 130 ERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           GL++EAF+L  +M ++ V+ +  T+ ++                                
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSM-------------------------------- 217

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC+    +  G+E++   ++  +     V  ALI M+ +C D+  A  +F     
Sbjct: 218 ---LNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPT 274

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + ++TW SM++G       +++  LF+ M   GV+P+ V   S+L  C     L+ GK+ 
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H   ++   ++  + +  +++ MY + G + +A  VFDL+  R+ V++T++IAG+   G 
Sbjct: 335 HAR-MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGR 393

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK-QFERMTSIYGIFPQLEHF 552
              A   F +M ++ I+P+ VT +++L ACS    +  GQ+ Q   + + YG   ++   
Sbjct: 394 IDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR-- 451

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL-ETR 611
             ++ +Y + G L  A  +  K+      A W  ++ A   H          + LL E  
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVA-WNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 612 PENSGYYVLIANM 624
             NS  +  I N+
Sbjct: 511 KPNSSTFTSILNV 523


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 197/658 (29%), Positives = 334/658 (50%), Gaps = 39/658 (5%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R+     +   A  G+   A + F  ++++    D V  + A ++  C  V  L +GKQL
Sbjct: 210 RVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCV--TVASLLAACASVGDLQKGKQL 267

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H+  +  G+  + +    L+  Y        A  +    +    + WNL++  Y +    
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDL 327

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNAL 215
           A++  ++ QMQ+  I  + FTYP +L+ C     ++ G  +HS  I    E  ++V   L
Sbjct: 328 AKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVL 387

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MY K+  +D AR++ + + +RD VSW +MI+ Y      +EA                
Sbjct: 388 IDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA---------------- 431

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
                              L     M+    + D++       AC+ + A++ G +IH  
Sbjct: 432 -------------------LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
                Y    ++ N L+ +Y+RC     A+ LF+    K  ITWN ++SG+      E++
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQA 532

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             +F +M ++G + N  T  S +   A +A+++ GK+ H   ++    +E  +  N+L+ 
Sbjct: 533 LMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA-NALIS 591

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           +Y + G + +AK +F  MS R+EV++ ++I      G G  AL LF++M +  +KP+ VT
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVT 651

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            + VL+ACSH GLV EG   F+ M+++YG+ P  +H+AC+VD+ GRAG L++A+  + +M
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEM 711

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P T  + +W TLL AC++H+N  IGE AA+ LLE  P +S  YVL++N YA TG W    
Sbjct: 712 PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRD 771

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           +VR  M+D G+RK PG +W++  N    F V D  +  + +IY  L  L + +   GY
Sbjct: 772 QVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGY 829



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 145/559 (25%), Positives = 261/559 (46%), Gaps = 43/559 (7%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAA-SHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           ++ +  L  +A RG   +AF  ++++  TA      VL S   ++  C K K  AQG+ +
Sbjct: 110 VSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSS---VLSACTKGKLFAQGRMI 166

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           HA            +   L+  Y  F  +  A  +  +      + +N LIS + + G  
Sbjct: 167 HAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHG 226

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNAL 215
             AL ++ +MQ   +R D  T  S+L AC  + D+  G+ +HS  + A   +      +L
Sbjct: 227 ECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSL 286

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + +Y K G ++ A  +F+     + V WN M+ AY       ++F++F +MQ  G+  N 
Sbjct: 287 LDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNK 346

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            T+  I    LRT                               C+  G ++LG++IH  
Sbjct: 347 FTYPCI----LRT-------------------------------CTCTGQIELGEQIHSL 371

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           +++  +     V   LI MYS+ + L  A  + +M  ++ +++W SM++GY   D  EE+
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
              F+EM   GV P+ + +AS    CA +  ++ G + H  +     +   + +WN+LV 
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSG-YAADISIWNTLVN 490

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           +YAR G+  EA S+F  +  +DE+T+  LI+G+G       AL +F +M++   K +  T
Sbjct: 491 LYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFT 550

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            ++ +SA ++   + +G++   R     G   + E    ++ LYG+ G +  AK I ++M
Sbjct: 551 FISAISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISLYGKCGSIEDAKMIFSEM 609

Query: 576 PYTPTSAMWATLLGACQIH 594
                   W T++ +C  H
Sbjct: 610 SLR-NEVSWNTIITSCSQH 627



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 221/486 (45%), Gaps = 42/486 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA ++  GL  + ++   L+  YA   L   A  + +  + R  + W  ++S Y + G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA---CHEWSLFV 211
              EA  +Y QM    +    +   SVL AC +      GR++H+ +     C E   FV
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSE--TFV 181

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            NAL+++Y  FG   +A R+F  ML  D V                              
Sbjct: 182 GNALIALYLGFGSFKLAERVFCDMLFCDRV------------------------------ 211

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
                T+NT+  G  + G+ +  L++   M+      D V     L AC+ VG L+ GK+
Sbjct: 212 -----TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQ 266

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H   ++           +L+ +Y +C D+  A+ +F +    +++ WN ML  Y  +  
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             +S  +F +M  +G+ PN  T   IL  C     ++ G++ H   ++   F   + +  
Sbjct: 327 LAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNG-FESDMYVSG 385

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            L++MY++   + +A+ + +++ +RD V++TS+IAGY        AL  F+EM    + P
Sbjct: 386 VLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP 445

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D++ + +  SAC+    + +G +   R+  + G    +  +  +V+LY R G   +A  +
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYARCGRSEEAFSL 504

Query: 572 ITKMPY 577
             ++ +
Sbjct: 505 FREIDH 510


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 219/652 (33%), Positives = 347/652 (53%), Gaps = 39/652 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L+ +   G+   A   F  +R + +  + V  ++  I+  C        G QLH   I  
Sbjct: 185 LRGYVKSGDFDNAIGTFCEMRTSYSMVNSV--TYTCILSICATRGNFCAGTQLHGLVIGS 242

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G E +P +   LV  Y+       A  L         + WN LI+ YV++GF  EA  ++
Sbjct: 243 GFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLF 302

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
             M S  ++ D+ T+ S L +  E   +   + VHS I      + +++ +AL+ +Y K 
Sbjct: 303 NAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKG 362

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G V++AR++F + +  D      MIS Y   GL  +A   F  + +EG+  N +T  ++ 
Sbjct: 363 GDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASV- 421

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L AC+ V ALK GKE+H   ++    
Sbjct: 422 ----------------------------------LPACAAVAALKPGKELHCHILKKRLE 447

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
              NV +A+  MY++C  L  AY  F+  +++  + WNSM+S ++     E +  LFR+M
Sbjct: 448 NIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQM 507

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             SG + + V+++S L   A +  L +GKE H Y++R A F+    + ++L++MY++ G 
Sbjct: 508 GMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNA-FSSDTFVASTLIDMYSKCGN 566

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  VF+LM  ++EV++ S+IA YG  G  R  L L+ EM +  I PDHVT + ++SA
Sbjct: 567 LALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISA 626

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C H+GLV EG   F  MT  YGI  ++EH+ACMVDLYGRAG +++A + I  MP+TP + 
Sbjct: 627 CGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAG 686

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W TLLGAC++H N  + + A+  LLE  P+NSGYYVL++N++A  G W  + KVR+ M+
Sbjct: 687 VWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMK 746

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           + GV+KIPG +W+D       F   D ++ ++ EIY +L  L   ++  GYV
Sbjct: 747 EKGVQKIPGYSWIDVNGGTHMFSAADGNHPESVEIYLILKSLLLELRKQGYV 798



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/513 (26%), Positives = 234/513 (45%), Gaps = 49/513 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C     + Q +Q+H   I  G+        +++  Y     + +A  L     +RY LPW
Sbjct: 21  CSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYALPW 80

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I      G++  AL  Y +M    +  D +T+P V+KACG + +V    VVH     
Sbjct: 81  NWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVH----- 135

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
                                 D AR L       D  + + +I  YA  G  ++A ++F
Sbjct: 136 ----------------------DTARSL---GFHVDLFAGSALIKLYADNGYIRDARRVF 170

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            E+       + I WN +  G +++G+F   +     MRT  + ++SV     L  C+  
Sbjct: 171 DELPLR----DTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATR 226

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           G    G ++HG  +   +     V N L+ MYS+C +L +A  LF    +   +TWN ++
Sbjct: 227 GNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLI 286

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR-RAM 442
           +GY      +E+A LF  M  +GV+P+ VT AS LP      +L+H KE H YI+R R  
Sbjct: 287 AGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVP 346

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F+ +L   ++L+++Y + G V  A+ +F      D    T++I+GY + G    A+  F 
Sbjct: 347 FDVYLK--SALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFR 404

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF-----ERMTSIYGIFPQLEHFACMVD 557
            + +  +  + +TM +VL AC+    +  G++       +R+ +I  +       + + D
Sbjct: 405 WLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNV------GSAITD 458

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +Y + G L+ A E   +M     S  W +++ +
Sbjct: 459 MYAKCGRLDLAYEFFRRMS-DRDSVCWNSMISS 490



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 208/440 (47%), Gaps = 37/440 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F ++I  CG +  +     +H  A +LG   +      L+  YA      +A  + +  
Sbjct: 114 TFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDEL 173

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R  + WN+++  YV+ G +  A+  + +M++     ++ TY  +L  C    +   G 
Sbjct: 174 PLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGT 233

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   I +  E+   V N LV+MY K G +  AR+LF+ M + D V+WN +I+ Y   G
Sbjct: 234 QLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNG 293

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF  M   GV+ + +T+ +     L +                          
Sbjct: 294 FTDEAAPLFNAMISAGVKPDSVTFASFLPSILES-------------------------- 327

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
                    G+L+  KE+H   VR        +++ALI +Y +  D+  A  +F+     
Sbjct: 328 ---------GSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILV 378

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +    +M+SGY       ++   FR + + G+  N +T+AS+LP CA VA L+ GKE H
Sbjct: 379 DVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELH 438

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
           C+IL++ + N  + + +++ +MYA+ G++  A   F  MS RD V + S+I+ +   G+ 
Sbjct: 439 CHILKKRLENI-VNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKP 497

Query: 495 RVALKLFEEMNKNQIKPDHV 514
            +A+ LF +M  +  K D V
Sbjct: 498 EIAIDLFRQMGMSGAKFDSV 517



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 8/293 (2%)

Query: 301 MRTQETYLDSVATVIG--LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
           M   ET LDS+ T +     ACS    ++  +++H   + G  G+     + ++ +Y  C
Sbjct: 1   MAKPET-LDSLTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLC 59

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
              R A  LF     +  + WN M+ G   L   + +   + +M  S V P+  T   ++
Sbjct: 60  GRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVI 119

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
             C  + N+      H    R   F+  L   ++L+++YA +G + +A+ VFD +  RD 
Sbjct: 120 KACGGLNNVPLCMVVH-DTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDT 178

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG-QKQFE 537
           + +  ++ GY   G+   A+  F EM  +    + VT   +LS C+  G    G Q    
Sbjct: 179 ILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGL 238

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            + S +   PQ+ +   +V +Y + G L  A+++   MP T T   W  L+  
Sbjct: 239 VIGSGFEFDPQVAN--TLVAMYSKCGNLLYARKLFNTMPQTDT-VTWNGLIAG 288


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 210/670 (31%), Positives = 338/670 (50%), Gaps = 69/670 (10%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-ENSNIRYPLPWNLLISLYV 151
           G Q+HA A+A G   +  +   LV  Y  F   ++A  +  E  + R  + WN L+S YV
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
           ++    +A+ V+ +M    I+   F +  V+ AC    +++ GR VH+  +   ++  +F
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVF 238

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
             NALV MY K G+VD+A  +F+KM + D VSWN +IS     G    A +L ++M+  G
Sbjct: 239 TANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLEL------------------LSRMRTQETYLDSVA 312
           +  NV T ++I   C   G F    ++                  L  M  +  +LD   
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 313 TVIG-------------LGACSHVG----------------------------------- 324
            V               +  CSH G                                   
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           A    +++H  AV+  +    +V N LI  Y +C  L  A  +F+  +   II   SM++
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
             +  D  E +  LF EM R G+EP+   ++S+L  CA ++  + GK+ H ++++R  F 
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR-QFM 537

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
                 N+LV  YA+ G + +A+  F  +  R  V+++++I G    G G+ AL+LF  M
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
               I P+H+TM +VL AC+H+GLV E ++ F  M  ++GI    EH++CM+DL GRAG 
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L+ A E++  MP+   +++W  LLGA ++H++  +G+ AAEKL    PE SG +VL+AN 
Sbjct: 658 LDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANT 717

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA+ G W+++AKVR  M+D  ++K P  +W++  +    F+V D S+   +EIY  L  L
Sbjct: 718 YASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVEL 777

Query: 685 TELMKDAGYV 694
            +LM  AG+V
Sbjct: 778 GDLMSKAGFV 787



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 218/488 (44%), Gaps = 48/488 (9%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNL 145
           +AL  G  LHA  +  G   +      L++FY+        C       I  P  + W+ 
Sbjct: 18  QALLPGAHLHASLLKSGSLAS--FRNHLISFYSK--CRRPCCARRVFDEIPDPCHVSWSS 73

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
           L++ Y  +G    A+  +  M++  +  + F  P VLK    + D   G  VH+   A  
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATG 130

Query: 206 EWS-LFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQLF 263
             S +FV NALV+MYG FG +D ARR+F++   ER+AVSWN ++SAY       +A Q+F
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            EM   G++     ++ +   C  + N                                 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRN--------------------------------- 217

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             ++ G+++H   VR  Y +     NAL+ MY +   +  A ++F+   +  +++WN+++
Sbjct: 218 --IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           SG         +  L  +M  SG+ PN  T++SIL  C+       G++ H +++ +A  
Sbjct: 276 SGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMI-KANA 334

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           +    +   LV+MYA++  + +A+ VFD M  RD +   +LI+G    G    AL LF E
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYE 394

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           + K  +  +  T+ AVL + + S       +Q   +    G          ++D Y +  
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTA-SLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCS 453

Query: 564 LLNKAKEI 571
            L+ A  +
Sbjct: 454 CLSDANRV 461



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 175/370 (47%), Gaps = 53/370 (14%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L+S Y K  +   ARR+FD++ +   VSW+++++AY++ GL + A Q F  M+ EGV 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV- 99

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
                       C        VL+ +   R                         LG ++
Sbjct: 100 ------------CCNEFALPVVLKCVPDAR-------------------------LGAQV 122

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDC 391
           H  A+   +G    V NAL+ MY     +  A  +F +  +E++ ++WN ++S Y   D 
Sbjct: 123 HAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQ 182

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             ++  +F EM  SG++P     + ++  C    N++ G++ H  ++R   +++ +   N
Sbjct: 183 CGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG-YDKDVFTAN 241

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +LV+MY + G+V  A  +F+ M   D V++ +LI+G  + G    A++L  +M  + + P
Sbjct: 242 ALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVP 301

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLL 565
           +  T+ ++L ACS +G        F+    I+G   +    +       +VD+Y +   L
Sbjct: 302 NVFTLSSILKACSGAG-------AFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 566 NKAKEIITKM 575
           + A+++   M
Sbjct: 355 DDARKVFDWM 364



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/429 (20%), Positives = 184/429 (42%), Gaps = 48/429 (11%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  +A E   +++ +    +V   + + I+  C    A   G+Q+H   I    + +  
Sbjct: 282 GHDHRAIELLLQMKYSGLVPNVF--TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   LV  YA     ++A  + +    R  +  N LIS     G + EAL ++ +++   
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG 399

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +  +  T  +VLK+   +      R VH+  +     +   V N L+  Y K   +  A 
Sbjct: 400 LGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDAN 459

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+F++    D ++  +MI+A +     + A +LF+EM  +G+E +    +++        
Sbjct: 460 RVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL-------- 511

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                                      L AC+ + A + GK++H   ++  +       N
Sbjct: 512 ---------------------------LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 544

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+  Y++C  +  A + F    E+ +++W++M+ G       + +  LF  M   G+ P
Sbjct: 545 ALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFN-----EHLLLWNSLVEMYARSGKVP 464
           N++T+ S+L  C     +   K +  +   + MF      EH   ++ ++++  R+GK+ 
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRY--FNSMKEMFGIDRTEEH---YSCMIDLLGRAGKLD 659

Query: 465 EAKSVFDLM 473
           +A  + + M
Sbjct: 660 DAMELVNSM 668



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 17/302 (5%)

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           AL  G  +H S ++   G   + RN LI+ YS+C+    A  +F    +   ++W+S+++
Sbjct: 19  ALLPGAHLHASLLKS--GSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
            Y++      +   F  M   GV  N   +  +L     V + + G + H   +    F 
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATG-FG 132

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
             + + N+LV MY   G + +A+ VF+   S R+ V++  L++ Y    +   A+++F E
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M  + I+P       V++AC+ S   +E  +Q   M    G    +     +VD+Y + G
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGS-RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG 251

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
            ++ A  I  KMP +   + W  L+  C ++   G    A E LL+ +     Y  L+ N
Sbjct: 252 RVDIASVIFEKMPDSDVVS-WNALISGCVLN---GHDHRAIELLLQMK-----YSGLVPN 302

Query: 624 MY 625
           ++
Sbjct: 303 VF 304


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 210/670 (31%), Positives = 338/670 (50%), Gaps = 69/670 (10%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-ENSNIRYPLPWNLLISLYV 151
           G Q+HA A+A G   +  +   LV  Y  F   ++A  +  E  + R  + WN L+S YV
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
           ++    +A+ V+ +M    I+   F +  V+ AC    +++ GR VH+  +   ++  +F
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVF 238

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
             NALV MY K G+VD+A  +F+KM + D VSWN +IS     G    A +L ++M+  G
Sbjct: 239 TANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLEL------------------LSRMRTQETYLDSVA 312
           +  NV T ++I   C   G F    ++                  L  M  +  +LD   
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 313 TVIG-------------LGACSHVG----------------------------------- 324
            V               +  CSH G                                   
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           A    +++H  AV+  +    +V N LI  Y +C  L  A  +F+  +   II   SM++
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
             +  D  E +  LF EM R G+EP+   ++S+L  CA ++  + GK+ H ++++R  F 
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR-QFM 537

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
                 N+LV  YA+ G + +A+  F  +  R  V+++++I G    G G+ AL+LF  M
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
               I P+H+TM +VL AC+H+GLV E ++ F  M  ++GI    EH++CM+DL GRAG 
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L+ A E++  MP+   +++W  LLGA ++H++  +G+ AAEKL    PE SG +VL+AN 
Sbjct: 658 LDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANT 717

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA+ G W+++AKVR  M+D  ++K P  +W++  +    F+V D S+   +EIY  L  L
Sbjct: 718 YASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVEL 777

Query: 685 TELMKDAGYV 694
            +LM  AG+V
Sbjct: 778 GDLMSKAGFV 787



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 218/488 (44%), Gaps = 48/488 (9%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNL 145
           +AL  G  LHA  +  G   +      L++FY+        C       I  P  + W+ 
Sbjct: 18  QALLPGAHLHASLLKSGSLAS--FRNHLISFYSK--CRRPCCARRFFDEIPDPCHVSWSS 73

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
           L++ Y  +G    A+  +  M++  +  + F  P VLK    + D   G  VH+   A  
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATG 130

Query: 206 EWS-LFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQLF 263
             S +FV NALV+MYG FG +D ARR+F++   ER+AVSWN ++SAY       +A Q+F
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            EM   G++     ++ +   C  + N                                 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRN--------------------------------- 217

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             ++ G+++H   VR  Y +     NAL+ MY +   +  A ++F+   +  +++WN+++
Sbjct: 218 --IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           SG         +  L  +M  SG+ PN  T++SIL  C+       G++ H +++ +A  
Sbjct: 276 SGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMI-KANA 334

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           +    +   LV+MYA++  + +A+ VFD M  RD +   +LI+G    G    AL LF E
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYE 394

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           + K  +  +  T+ AVL + + S       +Q   +    G          ++D Y +  
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTA-SLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCS 453

Query: 564 LLNKAKEI 571
            L+ A  +
Sbjct: 454 CLSDANRV 461



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 174/370 (47%), Gaps = 53/370 (14%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L+S Y K  +   ARR FD++ +   VSW+++++AY++ GL + A Q F  M+ EGV 
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV- 99

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
                       C        VL+ +   R                         LG ++
Sbjct: 100 ------------CCNEFALPVVLKCVPDAR-------------------------LGAQV 122

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDC 391
           H  A+   +G    V NAL+ MY     +  A  +F +  +E++ ++WN ++S Y   D 
Sbjct: 123 HAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQ 182

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             ++  +F EM  SG++P     + ++  C    N++ G++ H  ++R   +++ +   N
Sbjct: 183 CGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG-YDKDVFTAN 241

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +LV+MY + G+V  A  +F+ M   D V++ +LI+G  + G    A++L  +M  + + P
Sbjct: 242 ALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVP 301

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLL 565
           +  T+ ++L ACS +G        F+    I+G   +    +       +VD+Y +   L
Sbjct: 302 NVFTLSSILKACSGAG-------AFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 566 NKAKEIITKM 575
           + A+++   M
Sbjct: 355 DDARKVFDWM 364



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/429 (20%), Positives = 184/429 (42%), Gaps = 48/429 (11%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  +A E   +++ +    +V   + + I+  C    A   G+Q+H   I    + +  
Sbjct: 282 GHDHRAIELLLQMKYSGLVPNVF--TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   LV  YA     ++A  + +    R  +  N LIS     G + EAL ++ +++   
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG 399

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +  +  T  +VLK+   +      R VH+  +     +   V N L+  Y K   +  A 
Sbjct: 400 LGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDAN 459

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+F++    D ++  +MI+A +     + A +LF+EM  +G+E +    +++        
Sbjct: 460 RVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL-------- 511

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                                      L AC+ + A + GK++H   ++  +       N
Sbjct: 512 ---------------------------LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 544

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+  Y++C  +  A + F    E+ +++W++M+ G       + +  LF  M   G+ P
Sbjct: 545 ALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFN-----EHLLLWNSLVEMYARSGKVP 464
           N++T+ S+L  C     +   K +  +   + MF      EH   ++ ++++  R+GK+ 
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRY--FNSMKEMFGIDRTEEH---YSCMIDLLGRAGKLD 659

Query: 465 EAKSVFDLM 473
           +A  + + M
Sbjct: 660 DAMELVNSM 668



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 17/302 (5%)

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           AL  G  +H S ++   G   + RN LI+ YS+C+    A   F    +   ++W+S+++
Sbjct: 19  ALLPGAHLHASLLKS--GSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVT 76

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
            Y++      +   F  M   GV  N   +  +L  C   A L  G + H   +    F 
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVPDARL--GAQVHAMAMATG-FG 132

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
             + + N+LV MY   G + +A+ VF+   S R+ V++  L++ Y    +   A+++F E
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M  + I+P       V++AC+ S   +E  +Q   M    G    +     +VD+Y + G
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGS-RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG 251

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
            ++ A  I  KMP +   + W  L+  C ++   G    A E LL+ +     Y  L+ N
Sbjct: 252 RVDIASVIFEKMPDSDVVS-WNALISGCVLN---GHDHRAIELLLQMK-----YSGLVPN 302

Query: 624 MY 625
           ++
Sbjct: 303 VF 304


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 218/674 (32%), Positives = 342/674 (50%), Gaps = 52/674 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCC-----GKVKALAQGKQLHA 98
           + + A  G+ S +   F ++     S  V +DS+    F C       ++++  G+QLH 
Sbjct: 167 MNELAKSGDFSGSIGLFKKM----MSSGVEMDSYT---FSCVSKSFSSLRSVHGGEQLHG 219

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
             +  G  +   +   LV FY      ++A  + +    R  + WN +I+ YV +G   +
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVS 217
            L V+ QM    I  D  T  SV   C +   +  GR VHS  + AC        N L+ 
Sbjct: 280 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 339

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY K G +D A+ +F +M +R  VS+ +MI+ YA +GL  EA +LF EM+EEG+  +V T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
              +                                   L  C+    L  GK +H    
Sbjct: 400 VTAV-----------------------------------LNCCARYRLLDEGKRVHEWIK 424

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
               G    V NAL+ MY++C  ++ A ++F     K II+WN+++ GY+    A E+  
Sbjct: 425 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 484

Query: 398 LFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
           LF  +       P+  T+A +LP CA ++    G+E H YI+R   F++  +  NSLV+M
Sbjct: 485 LFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA-NSLVDM 543

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G +  A  +FD ++ +D V++T +IAGYG+ G G+ A+ LF +M +  I+ D ++ 
Sbjct: 544 YAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISF 603

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           V++L ACSHSGLV EG + F  M     I P +EH+AC+VD+  R G L KA   I  MP
Sbjct: 604 VSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMP 663

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             P + +W  LL  C+IH +  + E  AEK+ E  PEN+GYYVL+AN+YA    W+++ +
Sbjct: 664 IPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKR 723

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY--V 694
           +R  +   G+RK PGC+W++     + F+  D+SN + + I   L  +   M + GY  +
Sbjct: 724 LRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPL 783

Query: 695 VKEEFCSEEEIVEE 708
            K      EE+ +E
Sbjct: 784 TKYALIDAEEMEKE 797



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 148/568 (26%), Positives = 265/568 (46%), Gaps = 59/568 (10%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L+ F   GNL  A     ++   +   D+   +   ++  C   K+L  GK++       
Sbjct: 68  LRRFCESGNLENA----VKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGN 123

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   +  L  KL   Y +      A  + +   I   L WN+L++   + G ++ ++ ++
Sbjct: 124 GFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLF 183

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
           K+M S  +  D++T+  V K+   +  V  G  +H  I  +       V N+LV+ Y K 
Sbjct: 184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            +VD AR++FD+M ERD +SWN++I+ Y S GL ++   +FV+M   G+E+++ T  ++ 
Sbjct: 244 QRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVF 303

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            GC             SR+                        + LG+ +H   V+ C+ 
Sbjct: 304 AGCAD-----------SRL------------------------ISLGRAVHSIGVKACFS 328

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
             +   N L+ MYS+C DL  A  +F+  +++S++++ SM++GY     A E+  LF EM
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              G+ P+  T+ ++L  CAR   L  GK  H +I +       + + N+L++MYA+ G 
Sbjct: 389 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWI-KENDLGFDIFVSNALMDMYAKCGS 447

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE-EMNKNQIKPDHVTMVAVLS 521
           + EA+ VF  M  +D +++ ++I GY        AL LF   + + +  PD  T+  VL 
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 507

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEIITKM 575
           AC+           F++   I+G   +  +F+       +VD+Y + G L  A  +   +
Sbjct: 508 ACA-------SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 560

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWA 603
             +     W  ++    +H   G G+ A
Sbjct: 561 A-SKDLVSWTVMIAGYGMH---GFGKEA 584


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 218/674 (32%), Positives = 342/674 (50%), Gaps = 52/674 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCC-----GKVKALAQGKQLHA 98
           + + A  G+ S +   F ++     S  V +DS+    F C       ++++  G+QLH 
Sbjct: 16  MNELAKSGDFSGSIGLFKKM----MSSGVEMDSYT---FSCVSKSFSSLRSVHGGEQLHG 68

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
             +  G  +   +   LV FY      ++A  + +    R  + WN +I+ YV +G   +
Sbjct: 69  FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 128

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVS 217
            L V+ QM    I  D  T  SV   C +   +  GR VHS  + AC        N L+ 
Sbjct: 129 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 188

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY K G +D A+ +F +M +R  VS+ +MI+ YA +GL  EA +LF EM+EEG+  +V T
Sbjct: 189 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 248

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
              +                                   L  C+    L  GK +H    
Sbjct: 249 VTAV-----------------------------------LNCCARYRLLDEGKRVHEWIK 273

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
               G    V NAL+ MY++C  ++ A ++F     K II+WN+++ GY+    A E+  
Sbjct: 274 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 333

Query: 398 LFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
           LF  +       P+  T+A +LP CA ++    G+E H YI+R   F++  +  NSLV+M
Sbjct: 334 LFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA-NSLVDM 392

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G +  A  +FD ++ +D V++T +IAGYG+ G G+ A+ LF +M +  I+ D ++ 
Sbjct: 393 YAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISF 452

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           V++L ACSHSGLV EG + F  M     I P +EH+AC+VD+  R G L KA   I  MP
Sbjct: 453 VSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMP 512

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             P + +W  LL  C+IH +  + E  AEK+ E  PEN+GYYVL+AN+YA    W+++ +
Sbjct: 513 IPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKR 572

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY--V 694
           +R  +   G+RK PGC+W++     + F+  D+SN + + I   L  +   M + GY  +
Sbjct: 573 LRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPL 632

Query: 695 VKEEFCSEEEIVEE 708
            K      EE+ +E
Sbjct: 633 TKYALIDAEEMEKE 646



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 228/466 (48%), Gaps = 52/466 (11%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           I   L WN+L++   + G ++ ++ ++K+M S  +  D++T+  V K+   +  V  G  
Sbjct: 6   IEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ 65

Query: 197 VHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H  I  +       V N+LV+ Y K  +VD AR++FD+M ERD +SWN++I+ Y S GL
Sbjct: 66  LHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGL 125

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
            ++   +FV+M   G+E+++ T  ++  GC             SR+              
Sbjct: 126 AEKGLSVFVQMLVSGIEIDLATIVSVFAGCAD-----------SRL-------------- 160

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
                     + LG+ +H   V+ C+   +   N L+ MYS+C DL  A  +F+  +++S
Sbjct: 161 ----------ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 210

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++++ SM++GY     A E+  LF EM   G+ P+  T+ ++L  CAR   L  GK  H 
Sbjct: 211 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 270

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           +I +       + + N+L++MYA+ G + EA+ VF  M  +D +++ ++I GY       
Sbjct: 271 WI-KENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 329

Query: 496 VALKLFE-EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA- 553
            AL LF   + + +  PD  T+  VL AC+           F++   I+G   +  +F+ 
Sbjct: 330 EALSLFNLLLEEKRFSPDERTVACVLPACA-------SLSAFDKGREIHGYIMRNGYFSD 382

Query: 554 -----CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
                 +VD+Y + G L  A  +   +  +     W  ++    +H
Sbjct: 383 RHVANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMH 427


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 205/664 (30%), Positives = 345/664 (51%), Gaps = 41/664 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +  E F ++++     + V  S         +   L +GK++H CA+   ++
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKV--SAVSAFLAAAETIDLEKGKEIHGCALQQRID 361

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + ++   L+  YA       A  L      R  + W+ +I+  V+ G+  EAL ++++M
Sbjct: 362 SDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEM 421

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q+++++ +  T  S+L AC ++  +  G+ +H   + A  +  L    ALVSMY K G  
Sbjct: 422 QNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFF 481

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A   F++M  R                                   +++TWN++  G 
Sbjct: 482 TAALTTFNRMSSR-----------------------------------DIVTWNSLINGY 506

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
            + G+    +++  ++R      D+   V  + AC+ +  L  G  IHG  V+  +    
Sbjct: 507 AQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDC 566

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTA-EKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           +V+NALI MY++C  L  A  LF  T   K  +TWN +++ Y     A+E+   F +M  
Sbjct: 567 HVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRL 626

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
               PN VT  S+LP  A +A  + G  FH  I++   F  + L+ NSL++MYA+ G++ 
Sbjct: 627 ENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG-FLSNTLVGNSLIDMYAKCGQLD 685

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            ++ +F+ M  +D V++ ++++GY + G G  A+ LF  M ++Q++ D V+ V+VLSAC 
Sbjct: 686 YSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACR 745

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H+GLV EG+K F  M+  Y I P LEH+ACMVDL GRAGL ++    I  MP  P + +W
Sbjct: 746 HAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVW 805

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LLG+C++H N  +GE A + L++  P N  ++V+++++YA +G W    K R+ M DL
Sbjct: 806 GALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDL 865

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
           G++K PGC+WV+  N    F V D S+ Q + ++ L   L E M+  GY V +  C  + 
Sbjct: 866 GLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGY-VPDRSCVLQN 924

Query: 705 IVEE 708
           + EE
Sbjct: 925 VEEE 928



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 146/545 (26%), Positives = 251/545 (46%), Gaps = 53/545 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C     L +G   H      GLE++  +   LV  Y+       A  + +  
Sbjct: 131 TFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 190

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+   +     EA+  ++ MQ   +   + +  ++     ++ +++  R
Sbjct: 191 PKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR 250

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            +H  +    ++S  V N L+ +Y K G VDVARR+FD+M+++D VSW TM++ YA  G 
Sbjct: 251 SIHGYVFR-RDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGC 309

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
           + E  +LF +M+   V +N                                    V+ V 
Sbjct: 310 FVEVLELFDKMKLGNVRIN-----------------------------------KVSAVS 334

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
              A +    L+ GKEIHG A++        V   L+ MY++C +   A  LF     + 
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++ W+++++        EE+  LF+EM    ++PN VT+ SILP CA ++ L+ GK  HC
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC 454

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           + ++  M +  L    +LV MYA+ G    A + F+ MS RD VT+ SLI GY   G+  
Sbjct: 455 FTVKADM-DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPY 513

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-- 553
            A+ +F ++  + I PD  TMV V+ AC+    + +G       T I+G+  +L   +  
Sbjct: 514 NAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-------TCIHGLIVKLGFESDC 566

Query: 554 ----CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
                ++D+Y + G L  A+ +  K  +T     W  ++ A   +   G  + A     +
Sbjct: 567 HVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA---YMQNGHAKEAISSFHQ 623

Query: 610 TRPEN 614
            R EN
Sbjct: 624 MRLEN 628



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 170/362 (46%), Gaps = 49/362 (13%)

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+++Y  F + D+AR +FD       + WN+MI AY     + EA +++  M E+G+E +
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
             T+  +                                   L AC+    L+ G   HG
Sbjct: 129 KYTFTFV-----------------------------------LKACTGALNLQEGVWFHG 153

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
              R        +   L+ MYS+  DL+ A  +F    ++ ++ WN+M++G +  +   E
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +   FR M   GVEP+ V++ ++ P   +++N++  +  H Y+ RR   +    + N L+
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA---VSNGLI 270

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           ++Y++ G V  A+ VFD M  +D+V++ +++AGY   G     L+LF++M    ++ + V
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330

Query: 515 TMVAVLSACSHS-----GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           + V+   A + +     G  + G    +R+ S   +   L     MV +Y + G   KAK
Sbjct: 331 SAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPL-----MV-MYAKCGETEKAK 384

Query: 570 EI 571
           ++
Sbjct: 385 QL 386



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 126/279 (45%), Gaps = 19/279 (6%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L +C H+  L    +IH   +   +  + ++ + LI +YS       A  +F  T   S 
Sbjct: 39  LSSCKHLNPLL---QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           I WNSM+  YT      E+  ++  M   G+EP+  T   +L  C    NLQ G  FH  
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGE 154

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           I RR +    + +   LV+MY++ G +  A+ VFD M +RD V + ++IAG     +   
Sbjct: 155 IDRRGL-ERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSA-CSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC- 554
           A+  F  M    ++P  V+++ +    C  S +        E   SI+G   + +  +  
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI--------ELCRSIHGYVFRRDFSSAV 265

Query: 555 ---MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
              ++DLY + G ++ A+ +  +M        W T++  
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAG 303



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 12/191 (6%)

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           S    NY+    +L  C  +  L    + H  I+     + H +    L+ +Y+   K  
Sbjct: 26  SSTYTNYLHYPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSI--THLINLYSLFHKCD 80

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A+SVFD       + + S+I  Y    +   AL+++  M +  ++PD  T   VL AC+
Sbjct: 81  LARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT 140

Query: 525 HSGLVVEG---QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
            +  + EG     + +R      +F      A +VD+Y + G L +A+E+  KMP     
Sbjct: 141 GALNLQEGVWFHGEIDRRGLERDVFIG----AGLVDMYSKMGDLKRAREVFDKMPKRDVV 196

Query: 582 AMWATLLGACQ 592
           A  A + G  Q
Sbjct: 197 AWNAMIAGLSQ 207


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 203/626 (32%), Positives = 328/626 (52%), Gaps = 53/626 (8%)

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           N + + + +  +    L  NA  + E  N      WN++I  Y  +G + EA+  Y +M+
Sbjct: 57  NDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRME 116

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVD 226
              IR DNFT+P V+KACGE++ +  G+ VH   I    +  ++V N L+ MY K G ++
Sbjct: 117 CEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIE 176

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG-- 284
           +A ++FD+M  RD VSWN+M+S Y   G    +   F EM   G + +     +  G   
Sbjct: 177 LAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACS 236

Query: 285 ---CLRTGN------FKGVLEL-------------------------------------- 297
              CLR+G        +  LEL                                      
Sbjct: 237 IEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNA 296

Query: 298 -LSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            +  M+  +  +  V T+I  L +CS  GAL  GK IHG A+R  +  Y  +  AL+ MY
Sbjct: 297 MIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMY 356

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
            +C +L+ A  +F    EK++++WN+M++ Y   +  +E+  +F+ +    ++P+ +TIA
Sbjct: 357 GKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIA 416

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           S+LP  A +A+   GK+ H YI++  +   +  + N++V MYA+ G +  A+  FD M  
Sbjct: 417 SVLPAVAELASRSEGKQIHSYIMKLGL-GSNTFISNAIVYMYAKCGDLQTAREFFDGMVC 475

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           +D V++ ++I  Y I G GR +++ F EM     KP+  T V++L+ACS SGL+ EG   
Sbjct: 476 KDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGF 535

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  M   YGI P +EH+ CM+DL GR G L++AK  I +MP  PT+ +W +LL A + H 
Sbjct: 536 FNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHN 595

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           +  + E AA  +L  + +N+G YVL++NMYA  G W+ + +++  M++ G+ K  GC+ V
Sbjct: 596 DVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMV 655

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLL 681
           D       F+  D S+     IY +L
Sbjct: 656 DINGRSESFINQDRSHAHTNLIYDVL 681


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 349/667 (52%), Gaps = 50/667 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G+  +A + F ++ +          +F  ++  C   + L  G+++H     LG +
Sbjct: 149 YVRNGHFREAIDCFYQL-LLVTKFQADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQ 204

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L+  Y+ F     A  L ++   R    WN +IS  +++G  A+AL V  +M
Sbjct: 205 WDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 264

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQV 225
           +   I  D+ T  S+L  C ++ D+    ++H   I    E+ LFV NAL++MY KFG +
Sbjct: 265 RLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNL 324

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A+++F +M  RD VSWN++I+AY        A   F +MQ  G+E +++T  ++A   
Sbjct: 325 GDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIA 384

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEY 344
            ++ ++K                                     + +HG  +R G   E 
Sbjct: 385 AQSRDYKN-----------------------------------SRSVHGFIMRRGWLMEA 409

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             + NA++ MY++   +  A+ +F +   K +++WN+++SGYT    A E+  ++R M  
Sbjct: 410 VVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEE 469

Query: 405 -SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL--LLWNSLVEMYARSG 461
              ++ N  T  SIL   A V  LQ G   H ++++    N HL   +   L+++Y + G
Sbjct: 470 CREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKT---NLHLDVFVGTCLIDLYGKCG 526

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           ++ +A  +F  + R   V + ++I+ +GI G G  ALKLF EM    +KPDHVT +++LS
Sbjct: 527 RLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLS 586

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSHSGLV EG+  F  M   YGI P L+H+ CMVDL GRAG L  A + I  MP  P +
Sbjct: 587 ACSHSGLVDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDA 645

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           ++W  LLGAC+IH N  +G++A+++L E   EN GYYVL++N+YA  G W+ + KVR+  
Sbjct: 646 SIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLA 705

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCS 701
           R+ G++K PG + ++       F   + S+ + +EIY  L  LT  MK  GY+    F  
Sbjct: 706 RERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVL 765

Query: 702 EEEIVEE 708
           ++  VEE
Sbjct: 766 QD--VEE 770



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 151/526 (28%), Positives = 265/526 (50%), Gaps = 50/526 (9%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
            K+LHA  +  G  ++  +  +LV  YAS    + +    +    +    WN +IS YVR
Sbjct: 92  AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVR 151

Query: 153 DGFYAEAL-CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLF 210
           +G + EA+ C Y+ +   + + D +T+P VLKAC  ++D   GR +H  +     +W +F
Sbjct: 152 NGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVF 208

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V  +L+ MY +FG V +AR LFD M  RD  SWN MIS     G   +A  +  EM+ EG
Sbjct: 209 VAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 268

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           + ++ +T  +I   C + G+                   S AT+I      H+  +K G 
Sbjct: 269 INMDSVTVASILPVCAQLGDI------------------STATLI------HLYVIKHGL 304

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           E               V NALI MY++  +L  A  +F+    + +++WNS+++ Y   D
Sbjct: 305 EFE-----------LFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQND 353

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
               +   F +M  +G+EP+ +T+ S+  + A+  + ++ +  H +I+RR    E +++ 
Sbjct: 354 DPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIG 413

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQI 509
           N++++MYA+ G +  A  VF+L+  +D V++ +LI+GY   G    A++++  M +  +I
Sbjct: 414 NAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREI 473

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF--ACMVDLYGRAGLLNK 567
           K +  T V++L+A +H G + +G +    +         L+ F   C++DLYG+ G L  
Sbjct: 474 KLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTN---LHLDVFVGTCLIDLYGKCGRLVD 530

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           A  +  ++P   +S  W  ++    IH   G GE A +   E + E
Sbjct: 531 AMCLFYQVP-RESSVPWNAIISCHGIH---GHGEKALKLFREMQDE 572



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 220/495 (44%), Gaps = 78/495 (15%)

Query: 164 KQMQSRRIRGDNFTY----PSVLKACGEMMDVDFGRVVHSCIDACHEWSL---------- 209
           +Q+Q  +  GDN  +    P   +   +  ++DF  +  SC        L          
Sbjct: 46  RQIQMEQSSGDNGWFNGQIPFHWRQPAKNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKI 105

Query: 210 ---FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
              F+   LV++Y   G V ++R  FD++  +D  +WN+MISAY   G ++EA   F + 
Sbjct: 106 QSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQ- 164

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
                                       L L+++ +        V     L AC     L
Sbjct: 165 ----------------------------LLLVTKFQADFYTFPPV-----LKACQ---TL 188

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
             G++IH    +  +     V  +LI MYSR   +  A  LF     + + +WN+M+SG 
Sbjct: 189 VDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGL 248

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                A ++  +  EM   G+  + VT+ASILP+CA++ ++      H Y+++  +  E 
Sbjct: 249 IQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFE- 307

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           L + N+L+ MYA+ G + +A+ VF  M  RD V++ S+IA Y    +   A   F +M  
Sbjct: 308 LFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQL 367

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFA---CMVDLY 559
           N ++PD +T+V++ S  + S       + ++   S++G   +    +E       ++D+Y
Sbjct: 368 NGLEPDLLTLVSLASIAAQS-------RDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMY 420

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE--KLLETRPE---N 614
            + G+++ A ++   +P     + W TL+     +   G+   A E  +++E   E   N
Sbjct: 421 AKLGVIDSAHKVFNLIPVKDVVS-WNTLISG---YTQNGLASEAIEVYRMMEECREIKLN 476

Query: 615 SGYYVLIANMYAATG 629
            G +V I   YA  G
Sbjct: 477 QGTWVSILAAYAHVG 491


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/514 (37%), Positives = 299/514 (58%), Gaps = 26/514 (5%)

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
            FV NALV MY K G+++ A ++F++M  +D V+WN M++ Y+  G +++A  LF +M+E
Sbjct: 74  FFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMRE 133

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           E +E++V+TW+++  G  + G     +++  +M       + V  +  L AC+ VGAL  
Sbjct: 134 EKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLH 193

Query: 329 GKEIHGSAVRGCY-GEYEN------VRNALITMYSRCKDLRHAYILFK--MTAEKSIITW 379
           GKE H  +V+    GE+ +      V NALI MY++CK L  A  +F      ++ ++TW
Sbjct: 194 GKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTW 253

Query: 380 NSMLSGYTHLDCAEESAFLFREMFR--SGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
             M+ GY     A  +  LF EMF+  + + PN  TI+ +L  CAR+A L+ GK+ H Y+
Sbjct: 254 TVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYV 313

Query: 438 LRRAMFNEHLL-LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           LRR+  +  +L + N L++MY++SG V  A+ VFD MS+R+ V++TSL+ GYG+ G   V
Sbjct: 314 LRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGAALV 373

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
                          D +T + VL ACSHSG+V  G   F RM+  + + P +EH+ACM 
Sbjct: 374 L--------------DGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMA 419

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL+GRAG L +A  +I  M   PT  +W  LL AC+ H N  + E+AA+KLLE + +N G
Sbjct: 420 DLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADNDG 479

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            Y L++N+YA    W  +A++R  M+  G++K PG +WV        F V D +++Q+Q+
Sbjct: 480 TYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFYVGDRTHLQSQK 539

Query: 677 IYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEIG 710
           IY  L  L + +K  GYV +  F   +   EE G
Sbjct: 540 IYETLADLIKRIKAIGYVPQTNFSLHDVDDEEKG 573



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 166/407 (40%), Gaps = 94/407 (23%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV  YA      +A  + E    +  + WN +++ Y ++G + +AL ++ +M+  +I  D
Sbjct: 80  LVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELD 139

Query: 175 NFTYPSVLKACG------EMMDV------------------------DFGRVVHSCIDAC 204
             T+ SV+          E MDV                          G ++H     C
Sbjct: 140 VVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHC 199

Query: 205 HEW-------------SLFVHNALVSMYGKFGQVDVARRLFDKML--ERDAVSWNTMISA 249
           +                L V NAL+ MY K   ++VAR +FD++   +RD V+W  MI  
Sbjct: 200 YSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGG 259

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           YA  G    A QLF EM +     N I  N     C+                       
Sbjct: 260 YAQHGDANHALQLFSEMFKID---NCIVPNDFTISCV----------------------- 293

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYIL 367
                  L AC+ + ALK GK+IH   +R    + +   V N LI MYS+  D+  A ++
Sbjct: 294 -------LMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVV 346

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F   ++++ ++W S+L+GY               M  + +  + +T   +L  C+    +
Sbjct: 347 FDSMSKRNAVSWTSLLTGYG--------------MHGAALVLDGITFLVVLYACSHSGMV 392

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
             G +    + +  + +  +  +  + +++ R+G++ EA  + + MS
Sbjct: 393 DRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMS 439



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 34/246 (13%)

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANL-------- 427
           ++WNS++S Y+H     ++ FLFREM    G+ P+ V + +ILP+   +           
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFLGFFVGNALVDM 83

Query: 428 --QHGK-EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR----DEVT 480
             + GK E    +  R  F + ++ WN++V  Y+++G+  +A S+F  M       D VT
Sbjct: 84  YAKCGKMEDASKVFERMRFKD-VVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVT 142

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           ++S+I+GY  +G G  A+ +F +M   + +P+ VT++++LSAC+  G ++ G++     T
Sbjct: 143 WSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKE-----T 197

Query: 541 SIYGI-----------FPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLL 588
             Y +              L     ++D+Y +   L  A+ +  ++ P       W  ++
Sbjct: 198 HCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMI 257

Query: 589 GACQIH 594
           G    H
Sbjct: 258 GGYAQH 263



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 26/227 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A RG   +A + F ++       +VV  +   ++  C  V AL  GK+ H  ++   L+
Sbjct: 150 YAQRGFGCEAMDVFRQMCGCRCRPNVV--TLMSLLSACASVGALLHGKETHCYSVKFILK 207

Query: 107 -------KNPVLVPKLVTFYA-------SFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
                   +  ++  L+  YA       + ++++  C        R  + W ++I  Y +
Sbjct: 208 GEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEIC-----PKDRDVVTWTVMIGGYAQ 262

Query: 153 DGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEW 207
            G    AL ++ +M      I  ++FT   VL AC  +  + FG+ +H+ +         
Sbjct: 263 HGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSD 322

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            LFV N L+ MY K G VD A+ +FD M +R+AVSW ++++ Y   G
Sbjct: 323 VLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHG 369


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 236/736 (32%), Positives = 368/736 (50%), Gaps = 81/736 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G    A E +  +R    S D    +F  ++  CG V+ L  G ++H  AI  G +
Sbjct: 33  YVSNGEALGALEMYREMRHLGVSFDSY--TFPVLLKACGIVEDLFCGAEIHGLAIKYGCD 90

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL-PWNLLISLYVRDGFYAEALCVYKQ 165
               +V  LV  YA  +  N A  L +   +R  +  WN +IS Y  +G   EALC++ +
Sbjct: 91  SFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSE 150

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSM---YGK 221
           M    +  + +T+ + L+AC +   +  G  +H+ I  +     ++V NALV+M   +GK
Sbjct: 151 MLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGK 210

Query: 222 -------FGQVD--------------VARRLFDKMLE-----------RDAVSWNTMISA 249
                  FG ++              +   L+ + LE            D VS  ++I A
Sbjct: 211 MPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVA 270

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNV-------------------------------ITW 278
               G      ++     + G + N+                               I+W
Sbjct: 271 SGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISW 330

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG--LGACSHVGALKLGKEIHGSA 336
            T A G  +   +   LELL +++ +   +D  AT+IG  L AC  +  L   KEIHG  
Sbjct: 331 TTAAAGYAQNKCYLQALELLRQLQMEG--MDVDATMIGSILLACRGLNCLGKIKEIHGYT 388

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           +RG   +   ++N +I +Y  C  + +A  +F+    K +++W SM+S Y H   A ++ 
Sbjct: 389 IRGGLSD-PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKAL 447

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            +F  M  +G+EP+YVT+ SIL     ++ L+ GKE H +I+R+    E  +  N+LV+M
Sbjct: 448 EVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSIS-NTLVDM 506

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YAR G V +A  +F     R+ + +T++I+ YG+ G G  A++LF  M   +I PDH+T 
Sbjct: 507 YARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITF 566

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           +A+L ACSHSGLV EG+   E M   Y + P  EH+ C+VDL GR   L +A +I+  M 
Sbjct: 567 LALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQ 626

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             PT  +W  LLGAC+IH N  IGE AAEKLLE   +N G YVL++N++AA G W  + +
Sbjct: 627 NEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEE 686

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE-LMKDAGYVV 695
           VR  M+  G+ K PGC+W++ GN    FL  D  + +  +IY  L  +TE L ++ GYV 
Sbjct: 687 VRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVA 746

Query: 696 KEEF----CSEEEIVE 707
           + +F      EEE V+
Sbjct: 747 QTKFVLHNVGEEEKVQ 762



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 230/461 (49%), Gaps = 46/461 (9%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R    WN ++  YV +G    AL +Y++M+   +  D++T+P +LKACG + D+  G  +
Sbjct: 21  RSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEI 80

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGL 255
           H   I    +  +FV N+LV++Y K   ++ AR+LFD+M  R D VSWN++ISAY+  G+
Sbjct: 81  HGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGM 140

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EA  LF EM + GV  N  T+                                     
Sbjct: 141 CTEALCLFSEMLKAGVVTNTYTFAA----------------------------------- 165

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L AC     +KLG +IH + ++        V NAL+ MY R   +  A ++F     K 
Sbjct: 166 ALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKD 225

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           I+TWNSML+G+       E+   F ++  + ++P+ V+I SI+    R+  L +GKE H 
Sbjct: 226 IVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHA 285

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y ++   F+ ++L+ N+L++MYA+   +      FDLM+ +D +++T+  AGY       
Sbjct: 286 YAIKNG-FDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYL 344

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF--PQLEHFA 553
            AL+L  ++    +  D   + ++L AC   GL   G+ +     +I G    P L++  
Sbjct: 345 QALELLRQLQMEGMDVDATMIGSILLAC--RGLNCLGKIKEIHGYTIRGGLSDPVLQN-- 400

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            ++D+YG  G+++ A  I   +      + W +++ +C +H
Sbjct: 401 TIIDVYGECGIIDYAVRIFESIECKDVVS-WTSMI-SCYVH 439



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 154/318 (48%), Gaps = 37/318 (11%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MYGK G V  A  +FDKM ER                                   ++ T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSER-----------------------------------SIFT 25

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           WN + GG +  G   G LE+   MR      DS    + L AC  V  L  G EIHG A+
Sbjct: 26  WNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAI 85

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESA 396
           +     +  V N+L+ +Y++C D+  A  LF +M     +++WNS++S Y+      E+ 
Sbjct: 86  KYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEAL 145

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF EM ++GV  N  T A+ L  C   + ++ G + H  IL+     + + + N+LV M
Sbjct: 146 CLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLD-VYVANALVAM 204

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y R GK+PEA  +F  +  +D VT+ S++ G+   G    AL+ F ++    +KPD V++
Sbjct: 205 YVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSI 264

Query: 517 VAVLSACSHSGLVVEGQK 534
           ++++ A    G ++ G++
Sbjct: 265 ISIIVASGRLGYLLNGKE 282


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/609 (32%), Positives = 326/609 (53%), Gaps = 36/609 (5%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           AQ KQ+HA  + LGL+ +  L+ KL+   +SF     A  + ++       PWN +I  Y
Sbjct: 35  AQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY 94

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSL 209
            R+  + +AL +Y  MQ  R+  D+FT+P +LKAC  +  +  GR VH+ +     +  +
Sbjct: 95  SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           FV N L+++Y K  ++  AR +F                         E   L       
Sbjct: 155 FVQNGLIALYAKCRRLGSARTVF-------------------------EGLPL------- 182

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
             E  +++W  I     + G     LE+ S MR  +   D VA V  L A + +  LK G
Sbjct: 183 -PERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           + IH S V+       ++  +L TMY++C  +  A ILF      ++I WN+M+SGY   
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
             A E+  +F EM    V P+ ++I S +  CA+V +L+  +  + Y+  R+ + + + +
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV-GRSDYRDDVFI 360

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            ++L++M+A+ G V  A+ VFD    RD V ++++I GYG+ G  R A+ L+  M +  +
Sbjct: 361 SSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGV 420

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            P+ VT + +L AC+HSG+V EG   F  M   + I PQ +H+AC++DL GRAG L++A 
Sbjct: 421 HPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAY 479

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           E+I  MP  P   +W  LL AC+ HR+  +GE+AA++L    P N+G+YV ++N+YAA  
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            WD++A+VR  M++ G+ K  GC+WV+       F V D S+ + +EI   +  +   +K
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLK 599

Query: 690 DAGYVVKEE 698
           + G+V  ++
Sbjct: 600 EGGFVANKD 608



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/541 (23%), Positives = 225/541 (41%), Gaps = 89/541 (16%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ ++   +   A   ++ +++   S D    +F H++  C  +  L  G+ +HA    L
Sbjct: 91  IRGYSRNNHFQDALLMYSNMQLARVSPDSF--TFPHLLKACSGLSHLQMGRFVHAQVFRL 148

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYA 157
           G + +  +   L+  YA      +A  + E      PLP      W  ++S Y ++G   
Sbjct: 149 GFDADVFVQNGLIALYAKCRRLGSARTVFEG----LPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH---EWSLFVHNA 214
           EAL ++  M+   ++ D     SVL A   + D+  GR +H+ +       E  L +  +
Sbjct: 205 EALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI--S 262

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L +MY K GQV  A+ LFDKM   + + WN MIS YA  G  +EA  +F EM  + V  +
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
            I+  +                                    + AC+ VG+L+  + ++ 
Sbjct: 323 TISITS-----------------------------------AISACAQVGSLEQARSMYE 347

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
              R  Y +   + +ALI M+++C  +  A ++F  T ++ ++ W++M+ GY     A E
Sbjct: 348 YVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRARE 407

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  L+R M R GV PN VT   +L  C     ++ G  F   ++     N     +  ++
Sbjct: 408 AISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF-NLMADHKINPQQQHYACVI 466

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           ++  R+G + +A  V   M                                   ++P   
Sbjct: 467 DLLGRAGHLDQAYEVIKCMP----------------------------------VQPGVT 492

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
              A+LSAC     V  G+   +++ SI        H+  + +LY  A L ++  E+  +
Sbjct: 493 VWGALLSACKKHRHVELGEYAAQQLFSIDP--SNTGHYVQLSNLYAAARLWDRVAEVRVR 550

Query: 575 M 575
           M
Sbjct: 551 M 551


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/686 (30%), Positives = 344/686 (50%), Gaps = 69/686 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F +++  C   K + +G +L +  +  G + +  +   L+  +      ++A  +  N 
Sbjct: 207 TFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNL 266

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +I+   R   + +A  +++ M+   ++ D   + S+LKAC     ++ G+
Sbjct: 267 PRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGK 326

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+ + +   +  ++V  AL+SMY K G ++ A  +F+ +  R+ VSW  MI+ +A  G
Sbjct: 327 RVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHG 386

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK---------------------- 292
             +EAF  F +M E G+E N +T+ +I G C R    K                      
Sbjct: 387 RMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRT 446

Query: 293 ----------------GVLELLSRMRT------------QETYLDSVATVIGL------- 317
                            V E +S+                E Y ++VAT   L       
Sbjct: 447 ALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKP 506

Query: 318 ---------GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                      C    AL+LGK +    +R  +    ++RNAL++M+  C DL  A  LF
Sbjct: 507 DSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLF 566

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               E+ +++WN++++G+      + +   F+ M  SGV+P+ +T   +L  CA    L 
Sbjct: 567 NDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALT 626

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G+  H  I   A+ +  +++   L+ MY + G + +A  VF  + +++  ++TS+I GY
Sbjct: 627 EGRRLHALITEAAL-DCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGY 685

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G G+ AL+LF +M +  +KPD +T V  LSAC+H+GL+ EG   FE M   + I P+
Sbjct: 686 AQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPR 744

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH+ CMVDL+GRAGLL++A E I KM   P S +W  LLGACQ+H +  + E  A+K L
Sbjct: 745 MEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKL 804

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P + G YV+++N+YAA G W ++ K+R  M D GV K PG +W++       F  DD
Sbjct: 805 ELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDD 864

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYV 694
            ++ Q +EI+  LG L   MK  GYV
Sbjct: 865 KTHPQIEEIHAELGRLHMEMKKLGYV 890



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 141/552 (25%), Positives = 254/552 (46%), Gaps = 41/552 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L   +  G LS+A      + + +    +   +++ ++  C K K L  G+++H      
Sbjct: 76  LNRLSKAGQLSEAM--LVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFS 133

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            ++ +  +   L++ YA     N+A  + +    +    WNLL+  YV+   Y EA  ++
Sbjct: 134 KIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLH 193

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
           +QM    ++ D +T+  +L AC +  +VD G  + S I +A  +  LFV  AL++M+ K 
Sbjct: 194 EQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKC 253

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G VD A ++F+ +  RD                                   +ITW ++ 
Sbjct: 254 GGVDDALKVFNNLPRRD-----------------------------------LITWTSMI 278

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G  R   FK    L   M  +    D VA V  L AC+H  AL+ GK +H         
Sbjct: 279 TGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD 338

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V  AL++MY++C  +  A  +F +   +++++W +M++G+      EE+   F +M
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKM 398

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             SG+EPN VT  SIL  C+R + L+ G++ H  I++     +  +   +L+ MYA+ G 
Sbjct: 399 IESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR-TALLSMYAKCGS 457

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + +A++VF+ +S+++ V + ++I  Y    +   A+  F+ + K  IKPD  T  ++L+ 
Sbjct: 458 LMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNV 517

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C  S   +E  K  + +    G    L     +V ++   G L  A  +   MP     +
Sbjct: 518 CK-SPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVS 576

Query: 583 MWATLLGACQIH 594
            W T++     H
Sbjct: 577 -WNTIIAGFVQH 587



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/527 (23%), Positives = 239/527 (45%), Gaps = 46/527 (8%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N  ++   + G  +EA+ V   + S  I+    TY S+L+ C +  ++  G  +H+ I  
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 204 CH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              +  +F+ N L+SMY K G  + A+++FD+M ++D  SWN ++  Y     ++EAF+L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
             +M ++GV+ +  T+                                   V  L AC+ 
Sbjct: 193 HEQMVQDGVKPDKYTF-----------------------------------VYMLNACAD 217

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
              +  G E+    +   +     V  ALI M+ +C  +  A  +F     + +ITW SM
Sbjct: 218 AKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSM 277

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++G       +++  LF+ M   GV+P+ V   S+L  C     L+ GK  H   ++   
Sbjct: 278 ITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHAR-MKEVG 336

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            +  + +  +L+ MY + G + +A  VF+L+  R+ V++T++IAG+   G    A   F 
Sbjct: 337 LDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFN 396

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M ++ I+P+ VT +++L ACS    + +G++  +R+    G          ++ +Y + 
Sbjct: 397 KMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKA-GYITDDRVRTALLSMYAKC 455

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE--TRPENSGYYVL 620
           G L  A+ +  ++      A W  ++ A   H          + LL+   +P++S +  +
Sbjct: 456 GSLMDARNVFERISKQNVVA-WNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSI 514

Query: 621 IANMYAAT----GCWDKLAKVRTCMR-DLGVRKIPGCAWVDAGNVFS 662
           +    +      G W +   +R     DL +R      +V+ G++ S
Sbjct: 515 LNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMS 561



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 38/261 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   G    AF+ F  ++ +    D +  +F  ++  C   +AL +G++LHA      L+
Sbjct: 584 FVQHGENQFAFDYFKMMQESGVKPDQI--TFTGLLNACASPEALTEGRRLHALITEAALD 641

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + V+   L++ Y      ++A  +  N   +    W  +I+ Y + G   EAL ++ QM
Sbjct: 642 CDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQM 701

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           Q   ++ D  T+   L AC     +  G     S  D   E  +  +  +V ++G+ G +
Sbjct: 702 QQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLL 761

Query: 226 DVARRLFDKM-LERDAVSWNTMISA----------------------------------Y 250
             A    +KM ++ D+  W  ++ A                                  Y
Sbjct: 762 HEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIY 821

Query: 251 ASKGLWKEAFQLFVEMQEEGV 271
           A+ G+WKE  ++   M + GV
Sbjct: 822 AAAGMWKEVTKMRKVMLDRGV 842


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 217/685 (31%), Positives = 343/685 (50%), Gaps = 102/685 (14%)

Query: 66  TAASH------DVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVT 117
           TAA H      D  +DS  +A ++  C   + L  GKQ+HA  +  G   +  +  KL+ 
Sbjct: 46  TAAHHTHLSLLDKQIDSSTYASLLESC---RTLNLGKQVHAHTLKTGFHGHEFVETKLLQ 102

Query: 118 FYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFT 177
            Y  F   ++A  +      R    W  ++S++V  G++ EAL +++++Q   I  + F 
Sbjct: 103 MYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFV 162

Query: 178 YPSVLKACGEMMDVDFGRVVHS-----CIDACHEWSLFV---------HNALVSMYGKFG 223
           +P VLK CG +  ++ GR +H      C D      +F          +N ++  Y + G
Sbjct: 163 FPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENG 222

Query: 224 QVDVARRLFDKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEM-QEEGVEVNVITWNT 280
            V+ A+ LFD+M  + +D +SWN+MIS YA   L+ EA  +F ++  EEG+E +  T  +
Sbjct: 223 NVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGS 282

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV-RG 339
           +                                   L AC+ + +L+ GKE+H  AV RG
Sbjct: 283 V-----------------------------------LAACADMASLRRGKEVHAQAVVRG 307

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT------------ 387
            +     V  AL+ MYS+C+DL+ A + F    E+   TWN ++SGY             
Sbjct: 308 LHWN-TFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLI 366

Query: 388 ---------------------HLDCA--EESAFLFREMFRSGVEPNYVTIASILPLCARV 424
                                H++    E +  LF EM  S + P+  T+  ILP CAR+
Sbjct: 367 QKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARL 426

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
           A +  GK+ H + +R+  +   + +  +LV+MYA+ G +  A  V++ +S  + V+  ++
Sbjct: 427 ATIARGKQVHAHSIRQG-YELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAM 485

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           +  Y + G G   + LF  M  N  +PDHVT ++VLS+C H+G V  G + F+ MT  Y 
Sbjct: 486 LTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMT-YYN 544

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           + P L+H+ C+VDL  RAG L++A E++ K+P  P S MW  LLG C I  N  +GE AA
Sbjct: 545 VTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAA 604

Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
           E L+E  P N+G YVL+AN+YA  G W  L + R  ++D G+ K PGC+W++       F
Sbjct: 605 ESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVF 664

Query: 665 LVDDTSNVQAQEIYPLLGGLTELMK 689
           L  D S+ + ++IY  L  L   M+
Sbjct: 665 LSCDKSHEKTEDIYTTLDNLNTHMR 689



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 231/488 (47%), Gaps = 40/488 (8%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEK 107
            G   +A   F ++++     D+ L+ F    ++  CG ++ L  G+QLH   I     K
Sbjct: 138 HGYFEEALSLFEKLQLD----DIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVI-----K 188

Query: 108 NPVLVPKLVTFYASFSLYNNACF------LVENSNI--------------RYPLPWNLLI 147
               +   +  ++ FS+ N   +        EN N+              +  + WN +I
Sbjct: 189 RCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMI 248

Query: 148 SLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS--CIDAC 204
           S Y  +  + EAL +++ +     I  D+FT  SVL AC +M  +  G+ VH+   +   
Sbjct: 249 SGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGL 308

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           H W+ FV  ALV MY K   +  A+  FD + ERD  +WN +IS YA     +    L  
Sbjct: 309 H-WNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQ 367

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           +M+ +G E NV TWN I  G +  G+ +  L L + M+T     D     I L AC+ + 
Sbjct: 368 KMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLA 427

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            +  GK++H  ++R  Y    ++  AL+ MY++C  ++HA  ++   +  ++++ N+ML+
Sbjct: 428 TIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLT 487

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
            Y      +E   LFR M  +G  P++VT  S+L  C     ++ G EF   ++      
Sbjct: 488 AYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFF-DLMTYYNVT 546

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGE---GRVALKL 500
             L  +  +V++ +R+G++ EA  +   + R+ D V + +L+ G  I G    G +A + 
Sbjct: 547 PSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAES 606

Query: 501 FEEMNKNQ 508
             E+  N 
Sbjct: 607 LIELEPNN 614


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 210/652 (32%), Positives = 348/652 (53%), Gaps = 45/652 (6%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           +L    E F  ++   A   V   +FA +   C  + AL  G QLH  A+      + V+
Sbjct: 255 DLRGGLELFKEMQ--KAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVI 312

Query: 112 VPKLVTFYASFSLYNNACFL---VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
               +  Y   +  ++A  L   + N N++    +N +I  Y R     EAL +++ +Q 
Sbjct: 313 GTATLDMYMKCNNLSDAQKLFNSLPNHNLQ---SYNAIIVGYARSDKGIEALGMFRLLQK 369

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
             +  D  +     +AC  +     G  VH   + +  + ++ V NA++ MYGK G +  
Sbjct: 370 SGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVE 429

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A  +F++M+ RDAVSWN +I+A+   G  ++   LFV M + G+E +  T+ ++      
Sbjct: 430 ACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSV------ 483

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        L AC+   AL  G EIH   ++   G    V
Sbjct: 484 -----------------------------LKACAGWQALNCGMEIHNRIIKSRLGLDSFV 514

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
             ALI MYS+C  +  A  L    AE+++++WN+++SG++    +EE+   F +M   GV
Sbjct: 515 GIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGV 574

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           +P+  T A+IL  CA +  ++ GK+ H  I+++ + ++   + ++LV+MY++ G + + +
Sbjct: 575 DPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD-AYISSTLVDMYSKCGNMQDFQ 633

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            +F+    RD VT+ +++ GY   G G  ALK+FE M    +KP+H T +AVL AC H G
Sbjct: 634 LIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMG 693

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV +G   F  M S YG+ PQLEH++C+VD+ GR+G ++KA E+I  MP+   + +W TL
Sbjct: 694 LVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTL 753

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L  C+IH N  + E AA  +L+  PE+S  YVL++N+YA  G W+++ K+R  MR  G++
Sbjct: 754 LSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLK 813

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           K PGC+W++  +    FLV D ++ +++EIY  L  LT+ MK  GY+   +F
Sbjct: 814 KEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDF 865



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 136/587 (23%), Positives = 260/587 (44%), Gaps = 86/587 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYN-- 126
           +F+HI   C   KAL  GKQ HA  I    +    +   L+  Y        +F +++  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 127 --------NACF--------------LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
                   NA                L +    R  + WN LIS Y+ +G + + + V+ 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           QM       D  T+  VLK+C  + D   G  +H   +    +  +   +AL+ MY K  
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++D + + F  M E++ VSW+ +I+        +   +LF EMQ+ GV V+  T+ ++  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASV-- 281

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                              +C+ + AL+LG ++HG A++  +G 
Sbjct: 282 ---------------------------------FRSCAGLSALRLGSQLHGHALKTDFGT 308

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              +  A + MY +C +L  A  LF      ++ ++N+++ GY   D   E+  +FR + 
Sbjct: 309 DVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQ 368

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           +SG+  + V+++     CA +     G + H   + +++   ++ + N++++MY + G +
Sbjct: 369 KSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSM-KSLCQSNICVANAILDMYGKCGAL 427

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            EA  VF+ M  RD V++ ++IA +   G     L LF  M ++ ++PD  T  +VL AC
Sbjct: 428 VEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC 487

Query: 524 S-----HSGLVVEGQKQFER--MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           +     + G+ +  +    R  + S  GI         ++D+Y + G++ KA+++  ++ 
Sbjct: 488 AGWQALNCGMEIHNRIIKSRLGLDSFVGI--------ALIDMYSKCGMMEKAEKLHDRLA 539

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE--TRPENSGYYVLI 621
              T   W  ++    + + +   +    K+LE    P+N  Y  ++
Sbjct: 540 -EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATIL 585



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 122/577 (21%), Positives = 251/577 (43%), Gaps = 49/577 (8%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  K  + F ++       D    +FA ++  C  ++    G Q+H  A+ +G + + V
Sbjct: 153 GDHRKVIDVFLQMGRMGTVFDRT--TFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVV 210

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
               L+  YA     + +     +   +  + W+ +I+  V++      L ++K+MQ   
Sbjct: 211 TGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAG 270

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +     T+ SV ++C  +  +  G  +H   +       + +  A + MY K   +  A+
Sbjct: 271 VGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQ 330

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +LF+ +   +  S+N +I  YA      EA  +F  +Q+ G+                  
Sbjct: 331 KLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLG----------------- 373

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                             LD V+      AC+ +     G ++HG +++        V N
Sbjct: 374 ------------------LDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVAN 415

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           A++ MY +C  L  A ++F+    +  ++WN++++ +      E++  LF  M +SG+EP
Sbjct: 416 AILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEP 475

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           +  T  S+L  CA    L  G E H  I++  +  +   +  +L++MY++ G + +A+ +
Sbjct: 476 DEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDS-FVGIALIDMYSKCGMMEKAEKL 534

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
            D ++ +  V++ ++I+G+ +Q +   A K F +M +  + PD+ T   +L  C++  + 
Sbjct: 535 HDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANL-VT 593

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           VE  KQ         +       + +VD+Y + G +   + I  K P        A + G
Sbjct: 594 VELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCG 653

Query: 590 ACQIHRNTGIGEWAAE-----KLLETRPENSGYYVLI 621
             Q     G+GE A +     +L   +P ++ +  ++
Sbjct: 654 YAQ----HGLGEEALKIFEYMQLENVKPNHATFLAVL 686



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 121/515 (23%), Positives = 218/515 (42%), Gaps = 66/515 (12%)

Query: 158 EALCVYKQMQSRRI----RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN 213
           +ALC  KQ  +R I    +   F    +++   +  D++F   V    D   +      N
Sbjct: 56  KALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKV---FDGMPQRDTVSWN 112

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           A++  Y   G + VA++LFD M ERD VSWN++IS Y   G  ++   +F++M   G   
Sbjct: 113 AMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMG--- 169

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                                           T  D     + L +CS +     G +IH
Sbjct: 170 --------------------------------TVFDRTTFAVVLKSCSSLEDHGGGIQIH 197

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G AV+  +       +AL+ MY++CK L  +   F    EK+ ++W+++++G    D   
Sbjct: 198 GLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLR 257

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
               LF+EM ++GV  +  T AS+   CA ++ L+ G + H + L+   F   +++  + 
Sbjct: 258 GGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTD-FGTDVVIGTAT 316

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MY +   + +A+ +F+ +   +  +Y ++I GY    +G  AL +F  + K+ +  D 
Sbjct: 317 LDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDE 376

Query: 514 VTMVAVLSACS-----HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           V++     AC+       GL V G        S   +   +      +D+YG+ G L +A
Sbjct: 377 VSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAI------LDMYGKCGALVEA 430

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGE-------WAAEKLLETRPENSGYYVLI 621
             +  +M  +  +  W  ++ A   H   G  E       W  +  +E      G  +  
Sbjct: 431 CLVFEEM-VSRDAVSWNAIIAA---HEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKA 486

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
              + A  C  ++   R     LG+    G A +D
Sbjct: 487 CAGWQALNCGMEIHN-RIIKSRLGLDSFVGIALID 520


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 205/664 (30%), Positives = 344/664 (51%), Gaps = 41/664 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +  E F ++++     + V  S         +   L +GK++H CA+   ++
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKV--SAVSAFLAAAETIDLEKGKEIHGCALQQRID 361

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + ++   L+  YA       A  L      R  + W+ +I+  V+ G+  EAL ++++M
Sbjct: 362 SDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEM 421

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q+++++ +  T  S+L AC ++  +  G+ +H   + A  +  L    ALVSMY K G  
Sbjct: 422 QNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFF 481

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A   F++M  R                                   +++TWN++  G 
Sbjct: 482 TAALTTFNRMSSR-----------------------------------DIVTWNSLINGY 506

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
            + G+    +++  ++R      D+   V  + AC+ +  L  G  IHG  V+  +    
Sbjct: 507 AQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDC 566

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTA-EKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           +V+NALI MY++C  L  A  LF  T   K  +TWN +++ Y     A+E+   F +M  
Sbjct: 567 HVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRL 626

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
               PN VT  S+LP  A +A  + G  FH  I++   F  + L+ NSL++MYA+ G++ 
Sbjct: 627 ENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG-FLSNTLVGNSLIDMYAKCGQLX 685

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            ++ +F+ M  +D V++ ++++GY + G G  A+ LF  M ++Q++ D V+ V+VLSAC 
Sbjct: 686 YSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACR 745

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV EG+K F  M+  Y I P LEH+ACMVDL GRAGL ++    I  MP  P + +W
Sbjct: 746 HXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVW 805

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LLG+C++H N  +GE A + L++  P N  ++V+++++YA +G W    K R+ M DL
Sbjct: 806 GALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDL 865

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
           G++K PGC+WV+  N    F V D S+ Q + ++ L   L E M+  GY V +  C  + 
Sbjct: 866 GLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGY-VPDRSCVLQN 924

Query: 705 IVEE 708
           + EE
Sbjct: 925 VEEE 928



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 146/545 (26%), Positives = 251/545 (46%), Gaps = 53/545 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C     L +G   H      GLE++  +   LV  Y+       A  + +  
Sbjct: 131 TFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 190

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+   +     EA+  ++ MQ   +   + +  ++     ++ +++  R
Sbjct: 191 PKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR 250

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            +H  +    ++S  V N L+ +Y K G VDVARR+FD+M+++D VSW TM++ YA  G 
Sbjct: 251 SIHGYVFR-RDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGC 309

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
           + E  +LF +M+   V +N                                    V+ V 
Sbjct: 310 FVEVLELFDKMKLGNVRIN-----------------------------------KVSAVS 334

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
              A +    L+ GKEIHG A++        V   L+ MY++C +   A  LF     + 
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++ W+++++        EE+  LF+EM    ++PN VT+ SILP CA ++ L+ GK  HC
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC 454

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           + ++  M +  L    +LV MYA+ G    A + F+ MS RD VT+ SLI GY   G+  
Sbjct: 455 FTVKADM-DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPY 513

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-- 553
            A+ +F ++  + I PD  TMV V+ AC+    + +G       T I+G+  +L   +  
Sbjct: 514 NAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-------TCIHGLIVKLGFESDC 566

Query: 554 ----CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
                ++D+Y + G L  A+ +  K  +T     W  ++ A   +   G  + A     +
Sbjct: 567 HVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA---YMQNGHAKEAISSFHQ 623

Query: 610 TRPEN 614
            R EN
Sbjct: 624 MRLEN 628



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 170/362 (46%), Gaps = 49/362 (13%)

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+++Y  F + D+AR +FD       + WN+MI AY     + EA +++  M E+G+E +
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
             T+  +                                   L AC+    L+ G   HG
Sbjct: 129 KYTFTFV-----------------------------------LKACTGALNLQEGVWFHG 153

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
              R        +   L+ MYS+  DL+ A  +F    ++ ++ WN+M++G +  +   E
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +   FR M   GVEP+ V++ ++ P   +++N++  +  H Y+ RR   +    + N L+
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA---VSNGLI 270

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           ++Y++ G V  A+ VFD M  +D+V++ +++AGY   G     L+LF++M    ++ + V
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330

Query: 515 TMVAVLSACSHS-----GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           + V+   A + +     G  + G    +R+ S   +   L     MV +Y + G   KAK
Sbjct: 331 SAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPL-----MV-MYAKCGETEKAK 384

Query: 570 EI 571
           ++
Sbjct: 385 QL 386



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 126/279 (45%), Gaps = 19/279 (6%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L +C H+  L    +IH   +   +  + ++ + LI +YS       A  +F  T   S 
Sbjct: 39  LSSCKHLNPLL---QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           I WNSM+  YT      E+  ++  M   G+EP+  T   +L  C    NLQ G  FH  
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGE 154

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           I RR +    + +   LV+MY++ G +  A+ VFD M +RD V + ++IAG     +   
Sbjct: 155 IDRRGL-ERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSA-CSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC- 554
           A+  F  M    ++P  V+++ +    C  S +        E   SI+G   + +  +  
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI--------ELCRSIHGYVFRRDFSSAV 265

Query: 555 ---MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
              ++DLY + G ++ A+ +  +M        W T++  
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAG 303



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 12/191 (6%)

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           S    NY+    +L  C  +  L    + H  I+     + H +    L+ +Y+   K  
Sbjct: 26  SSTYTNYLHYPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSI--THLINLYSLFHKCD 80

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A+SVFD       + + S+I  Y    +   AL+++  M +  ++PD  T   VL AC+
Sbjct: 81  LARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT 140

Query: 525 HSGLVVEG---QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
            +  + EG     + +R      +F      A +VD+Y + G L +A+E+  KMP     
Sbjct: 141 GALNLQEGVWFHGEIDRRGLERDVFIG----AGLVDMYSKMGDLKRAREVFDKMPKRDVV 196

Query: 582 AMWATLLGACQ 592
           A  A + G  Q
Sbjct: 197 AWNAMIAGLSQ 207


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/636 (32%), Positives = 339/636 (53%), Gaps = 39/636 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S + ++  C  ++    G ++H   I LG + +P     L+  YA       A  +    
Sbjct: 190 SLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEI 249

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + WN +I+  V       AL +  +M S R+    FT  S LKAC  +  V  GR
Sbjct: 250 PKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGR 309

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS +     E   FV   L+ MY K G +  AR +FD M  +D + WN++IS Y++ G
Sbjct: 310 QLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCG 369

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF  M +EG+E N  T +TI                          L S A  
Sbjct: 370 YDIEAMSLFTNMYKEGLEFNQTTLSTI--------------------------LKSTAGS 403

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
              G C         +++H  +++  Y     V N+L+  Y +C  L  A  +F++   +
Sbjct: 404 QANGFC---------EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAE 454

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            ++ + SM++ Y+     EE+  ++  M    ++P+    +S+   CA ++  + GK+ H
Sbjct: 455 DLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIH 514

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            ++L+  + ++ +   NSLV MYA+ G + +A  +F+ +S R  V+++++I G    G G
Sbjct: 515 VHVLKCGLLSD-VFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHG 573

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           R AL+LF +M KN I P+H+T+V+VLSAC+H+GLV E ++ F  M  ++GI P  EH+AC
Sbjct: 574 RKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYAC 633

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVD+ GR G L++A  ++ +MP+  ++A+W  LLGA +IH+N  +G  AAE LL   PE 
Sbjct: 634 MVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEK 693

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           SG ++L+AN+YA+TG WD +AKVR  M++  V+K PG +W++  +    F+V D S+ ++
Sbjct: 694 SGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRS 753

Query: 675 QEIYPLLGGLTELMKDAGYV--VKEEFCSEEEIVEE 708
           +EIY  L  L E +  AGYV  ++ +    E+I +E
Sbjct: 754 KEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKE 789



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/489 (26%), Positives = 232/489 (47%), Gaps = 17/489 (3%)

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           V  Y+    +  A  LV +S+    + W+ LIS YV++G   EAL  Y +M     +G+ 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 176 FTYPSVLKACGEMMDVDFGRVVH---------SCIDACHEWSL-FVHNALVSMYGKFGQV 225
           FT+ SVLK C    +++ G+ +H         S   + +E+SL  V NA   +  +   +
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            V   L     + D  S N ++  YA  G  + A  +F E+ +     ++++WN +  GC
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKP----DIVSWNAVIAGC 264

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
           +        L+LL +M +             L AC+ +G +KLG+++H + ++       
Sbjct: 265 VLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDS 324

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V   LI MYS+C  L+ A ++F +   K +I WNS++SGY++     E+  LF  M++ 
Sbjct: 325 FVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKE 384

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G+E N  T+++IL   A        ++ H   ++   +     + NSL++ Y +   + +
Sbjct: 385 GLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSG-YQYDGYVANSLLDSYGKCCLLED 443

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A  VF++    D V YTS+I  Y   G G  ALK++  M    IKPD     ++ +AC++
Sbjct: 444 AAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACAN 503

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
                +G KQ        G+   +     +V++Y + G ++ A  I  ++ +    + W+
Sbjct: 504 LSAYEQG-KQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVS-WS 561

Query: 586 TLLGACQIH 594
            ++G    H
Sbjct: 562 AMIGGLAQH 570



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 207/447 (46%), Gaps = 23/447 (5%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           YP +L       DV  G  +H+ I       L + N LV++Y K     VAR+L     E
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARI--IRLGLLGLRNRLVNLYSKCQCFRVARKLVIDSSE 110

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK----- 292
            D VSW+ +IS Y   G  +EA   + EM   G + N  T++++  GC  T N +     
Sbjct: 111 PDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQI 170

Query: 293 ----GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                V E++S   +   +  S++TV  L AC+ +     G ++HG  ++  Y       
Sbjct: 171 HRVALVTEMISTGISPNEF--SLSTV--LNACAGLEDENYGMKVHGYLIKLGYDSDPFSA 226

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           NAL+ MY++      A  +F    +  I++WN++++G    +  + +  L  +M    V 
Sbjct: 227 NALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVA 286

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+  T++S L  CA +  ++ G++ H  +++  M  +   +   L++MY++ G + +A+ 
Sbjct: 287 PSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDS-FVGVGLIDMYSKCGLLQDARM 345

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VFDLM  +D + + S+I+GY   G    A+ LF  M K  ++ +  T+  +L   S +G 
Sbjct: 346 VFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILK--STAGS 403

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
              G  +     SI   +    + A  ++D YG+  LL  A ++    P     A  + +
Sbjct: 404 QANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMI 463

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPEN 614
               Q     G+GE A +  L  +  +
Sbjct: 464 TAYSQY----GLGEEALKMYLRMQDRD 486


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 233/729 (31%), Positives = 362/729 (49%), Gaps = 91/729 (12%)

Query: 62  RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA-------LGLEKNPVLVPK 114
           R R++     V+L+S       C + K+L +GK +H   +          L    V   K
Sbjct: 4   RTRLSLEYCTVLLES-------CIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEK 56

Query: 115 LVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
           LV  Y + S    A  + +    R    + WNLLI  Y  +G Y EA+ +Y +M    I 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRL 231
            + FT+P VLKAC  + +   GR +H  I     E +++V  ALV  Y K G +D A+ +
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176

Query: 232 FDKMLERDAVSWNTMISAYA-SKGLWKEAFQLFVEMQEE---------GVEVNVITWNT- 280
           FDKM +RD V+WN+MIS ++  +G + E  +L V+MQ +         GV   V   N+ 
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSL 236

Query: 281 -----IAGGCLRTGNFKG-----------------------VLELLSRMRTQETY----- 307
                I G C+R G F G                       + +++  ++ + T+     
Sbjct: 237 RHGKEIHGFCVRRG-FVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVG 295

Query: 308 ---------------------------LDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                                      L +V     +  C+++  L  G  +H  A++  
Sbjct: 296 AYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG 355

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +     V N L++MY++C  +  A   F     +  +++ +++SGY     +EE   +F 
Sbjct: 356 FVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFL 415

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           EM  SG+ P   T+AS+LP CA +A L +G   HCY +    F    ++ N+L++MYA+ 
Sbjct: 416 EMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICG-FTADTMICNALIDMYAKC 474

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           GK+  A+ VFD M +R  V++ ++I  YGI G G  AL LF+ M    +KPD VT + ++
Sbjct: 475 GKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLI 534

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           SACSHSGLV EG+  F  MT  +GI P++EH+ACMVDL  RAGL  +    I KMP  P 
Sbjct: 535 SACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPD 594

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
             +W  LL AC++++N  +GE  ++K+ +  PE++G +VL++NMY+A G WD  A+VR  
Sbjct: 595 VRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFT 654

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDD-TSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            ++ G  K PGC+W++   V   FL     S+ Q  +I   L  L   MK  GY  +  +
Sbjct: 655 QKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSY 714

Query: 700 CSEEEIVEE 708
             ++   EE
Sbjct: 715 VFQDVEEEE 723



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDS---FAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           + +A E F ++ +     DV++ S    A +I  C  +  L+ G  LH  AI  G   + 
Sbjct: 303 MREALELFCQLLML--KDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDL 360

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           ++   L++ YA   + N A       ++R  + +  +IS YV++G   E L ++ +MQ  
Sbjct: 361 MVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLS 420

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVA 228
            I  +  T  SVL AC  +  + +G   H     C       + NAL+ MY K G++D A
Sbjct: 421 GINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTA 480

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           R++FD+M +R  VSWNTMI AY   G+  EA  LF  MQ EG++ + +T+  +   C  +
Sbjct: 481 RKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHS 540

Query: 289 G 289
           G
Sbjct: 541 G 541



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 111/302 (36%), Gaps = 62/302 (20%)

Query: 32  NEHIMR--INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           NE  +R  ++    +  +   GN  +    F  ++++  + +    + A ++  C  +  
Sbjct: 384 NEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKA--TLASVLPACAHLAG 441

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L  G   H  AI  G   + ++   L+  YA     + A  + +  + R  + WN +I  
Sbjct: 442 LHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIA 501

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE------------MMDVDFGRVV 197
           Y   G   EAL ++  MQS  ++ D+ T+  ++ AC               M  DFG + 
Sbjct: 502 YGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIP 561

Query: 198 HSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA------- 249
                AC          +V +  + G         +KM LE D   W  ++SA       
Sbjct: 562 RMEHYAC----------MVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNV 611

Query: 250 ---------------------------YASKGLWKEAFQLFVEMQEEGVEVNV-ITWNTI 281
                                      Y++ G W +A Q+    +E+G E +   +W  I
Sbjct: 612 ELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEI 671

Query: 282 AG 283
           +G
Sbjct: 672 SG 673


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 216/651 (33%), Positives = 335/651 (51%), Gaps = 39/651 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G   +A   + RI       DV   +F  ++  C     L +G+++HA  +    +
Sbjct: 110 YTKAGFFDEALCLYHRILWAGIRPDVY--TFPSVLRSCAGAMDLVRGREVHAHVVRFDFD 167

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +V  L+T Y       +A  L +    R  + WN +IS Y  +    E L ++ +M
Sbjct: 168 MDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRM 227

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
           +   I  D  T  SV+ AC  + D   G  +HS                           
Sbjct: 228 RELSIDPDLMTMTSVISACELLGDERLGTQLHSY-------------------------- 261

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
           V R  +D  +      +N++I  Y S G WKEA  +F  M+      +V++W TI  GC+
Sbjct: 262 VVRTAYDGNIS----VYNSLIQMYLSVGHWKEAESVFSGMECR----DVVSWTTIISGCV 313

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                   LE    M    T  D V     L AC+ +G L +G ++H  A R  +  Y  
Sbjct: 314 DNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVV 373

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V N+LI MYS+CK +  A  +F    +K +I+W S+++G    +   E+   FR+M    
Sbjct: 374 VANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS 433

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
            +PN VT+ S L  CARV  L  GKE H + L+  M  +  L  N+++++Y R G++  A
Sbjct: 434 -KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLP-NAILDLYVRCGRMRTA 491

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
            + F+L + +D   +  L+ GY  +G+G + ++LF+ M +++I PD VT +++L ACS S
Sbjct: 492 LNQFNL-NEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRS 550

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G+V EG + F+RM   Y I P L+H+AC+VDL GRAG LN+A E I +MP  P  A+W  
Sbjct: 551 GMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGA 610

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           LL AC+IHR+  +GE AA+ + +   E+ GYY+L+ N+YA +G WD++AKVR  M++ G+
Sbjct: 611 LLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGL 670

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKE 697
              PGC+WV+       FL  D  + Q QEI  +L G  E MK +G+  +E
Sbjct: 671 IVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQE 721



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 144/524 (27%), Positives = 248/524 (47%), Gaps = 50/524 (9%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           GNL +A +    ++       V  D F  +I  C   +  ++G+ +    ++  +    V
Sbjct: 12  GNLEQALKHLASMQEVKIP--VEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSV 69

Query: 111 -LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            L   L++ +  F    NA  +      R    WN+L+  Y + GF+ EALC+Y ++   
Sbjct: 70  RLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWA 129

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
            IR D +T+PSVL++C   MD+  GR VH+  +    +  + V NAL++MY K G V  A
Sbjct: 130 GIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSA 189

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           R LFDKM  RD +SWN MIS Y       E  +LF  M+E  ++ +++T  ++       
Sbjct: 190 RMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSV------- 242

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                                       + AC  +G  +LG ++H   VR  Y    +V 
Sbjct: 243 ----------------------------ISACELLGDERLGTQLHSYVVRTAYDGNISVY 274

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N+LI MY      + A  +F     + +++W +++SG       +++   ++ M  +G  
Sbjct: 275 NSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTM 334

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+ VTIAS+L  CA +  L  G + H  +  R     ++++ NSL++MY++  ++ +A  
Sbjct: 335 PDEVTIASVLSACASLGQLDMGMKLH-ELAERTGHILYVVVANSLIDMYSKCKRIEKALE 393

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           +F  +  +D +++TS+I G  I      AL  F +M     KP+ VT+++ LSAC+  G 
Sbjct: 394 IFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGA 452

Query: 529 VVEGQK----QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           ++ G++      +      G  P       ++DLY R G +  A
Sbjct: 453 LMCGKEIHAHALKAGMGFDGFLPN-----AILDLYVRCGRMRTA 491



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 185/387 (47%), Gaps = 38/387 (9%)

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           S+ + NAL+SM+ +FG V  A  +F +M ERD                            
Sbjct: 68  SVRLGNALLSMFVRFGDVGNAWNVFGRMGERD---------------------------- 99

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                  + +WN + GG  + G F   L L  R+       D       L +C+    L 
Sbjct: 100 -------LFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLV 152

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G+E+H   VR  +    +V NALITMY +C D+  A +LF     +  I+WN+M+SGY 
Sbjct: 153 RGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYF 212

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
             D   E   LF  M    ++P+ +T+ S++  C  + + + G + H Y++R A ++ ++
Sbjct: 213 ENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTA-YDGNI 271

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            ++NSL++MY   G   EA+SVF  M  RD V++T++I+G         AL+ ++ M   
Sbjct: 272 SVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEIT 331

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
              PD VT+ +VLSAC+  G +  G K  E +    G    +     ++D+Y +   + K
Sbjct: 332 GTMPDEVTIASVLSACASLGQLDMGMKLHE-LAERTGHILYVVVANSLIDMYSKCKRIEK 390

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIH 594
           A EI  ++P     + W +++   +I+
Sbjct: 391 ALEIFHQIPDKDVIS-WTSVINGLRIN 416


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 214/657 (32%), Positives = 347/657 (52%), Gaps = 48/657 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L +F+      +A   F  +R + +  D    S + ++  CG +     GKQ+H   I  
Sbjct: 64  LFEFSRNDQNKEALNLFLGLRRSGSPTDG--SSLSCVLKVCGCLFDRIVGKQVHCQCIKC 121

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G  ++  +   LV  Y       +   + +   ++  + W  L++ Y ++G   +AL ++
Sbjct: 122 GFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLF 181

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            QMQ   I+ + FT+ +VL        V+ G  VH+  I +  + ++FV N++V+MY K 
Sbjct: 182 SQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKS 241

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V  A+ +FD M  R                                   N ++WN++ 
Sbjct: 242 LMVSDAKAVFDSMENR-----------------------------------NAVSWNSMI 266

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSV--ATVIGLGACSHVGALKLGKEIHGSAVRGC 340
            G +  G      EL  RMR +   L     ATVI L  C+++  +   K++H   ++  
Sbjct: 267 AGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKL--CANIKEMSFAKQLHCQVIKNG 324

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                N++ AL+  YS+C ++  A+ LF  M   +++++W +++SGY      + +  LF
Sbjct: 325 SDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLF 384

Query: 400 REMFRS-GVEPNYVTIASILPLCAR-VANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEM 456
            +M R  GVEPN  T +S+L  CA   A+++ GK+FH C I  ++ F+  L + ++LV M
Sbjct: 385 CQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSI--KSGFSNALCVSSALVTM 442

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G +  A  VF     RD V++ S+I+GY   G G+ +LK+FEEM    ++ D +T 
Sbjct: 443 YAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITF 502

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           + V+SAC+H+GLV EGQ+ F+ M   Y I P +EH++CMVDLY RAG+L KA ++I KMP
Sbjct: 503 IGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMP 562

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           +   + +W TLL AC++H N  +GE AAEKL+  +P++S  YVL++N+YA  G W + AK
Sbjct: 563 FPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAK 622

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           VR  M    V+K  G +W++  N    F+  D S+ Q+  IY  L  L+  +KDAGY
Sbjct: 623 VRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGY 679



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 211/474 (44%), Gaps = 43/474 (9%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCID 202
           N L+  + R+    EAL ++  ++      D  +   VLK CG + D   G+ VH  CI 
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                 + V  +LV MY K   V+   R+FD+M  +                        
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVK------------------------ 156

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
                      NV++W ++  G  + G  +  L+L S+M+ +    +       LG  + 
Sbjct: 157 -----------NVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAA 205

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            GA++ G ++H   ++        V N+++ MYS+   +  A  +F     ++ ++WNSM
Sbjct: 206 DGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSM 265

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++G+       E+  LF  M   GV+      A+++ LCA +  +   K+ HC +++   
Sbjct: 266 IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGS 325

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            +  L +  +L+  Y++  ++ +A  +F +M   ++ V++T++I+GY   G    A+ LF
Sbjct: 326 -DFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLF 384

Query: 502 EEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
            +M + + ++P+  T  +VL+AC+     VE  KQF   +   G    L   + +V +Y 
Sbjct: 385 CQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYA 444

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           + G +  A E+  K         W +++     H   G G+ + +   E R +N
Sbjct: 445 KRGNIESANEVF-KRQVDRDLVSWNSMISGYAQH---GCGKKSLKIFEEMRSKN 494



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 3/228 (1%)

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
           H+  LF  T ++ +   N +L  ++  D  +E+  LF  + RSG   +  +++ +L +C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            + +   GK+ HC  + +  F E + +  SLV+MY ++  V + + VFD M  ++ V++T
Sbjct: 104 CLFDRIVGKQVHCQCI-KCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           SL+AGY   G    ALKLF +M    IKP+  T  AVL   +  G V +G  Q   M   
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKG-VQVHTMVIK 221

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G+   +     MV++Y ++ +++ AK +   M     +  W +++  
Sbjct: 222 SGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAG 268


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 192/629 (30%), Positives = 326/629 (51%), Gaps = 41/629 (6%)

Query: 71  DVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA 128
           D  +D+F    ++  C  + +   G+++H   +  G   +  +   L+  Y+       A
Sbjct: 119 DTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALA 178

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             L +    +  + W+ +I  Y R G   EAL + + M   R++       S+     E+
Sbjct: 179 RLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAEL 238

Query: 189 MDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
            D+  G+ +H+ +     C +  + +  AL+ MY K   +  ARR+FD + +   +SW  
Sbjct: 239 ADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTA 298

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           MI+AY       E  +LFV+M  EG+  N IT                   +LS ++   
Sbjct: 299 MIAAYIHCNNLNEGVRLFVKMLGEGMFPNEIT-------------------MLSLVKE-- 337

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
                         C   GAL+LGK +H   +R  +     +  A I MY +C D+R A 
Sbjct: 338 --------------CGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSAR 383

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F     K ++ W++M+S Y   +C +E+  +F  M   G+ PN  T+ S+L +CA+  
Sbjct: 384 SVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAG 443

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
           +L+ GK  H YI ++ +  + ++L  S V+MYA  G +  A  +F   + RD   + ++I
Sbjct: 444 SLEMGKWIHSYIDKQGIKGD-MILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMI 502

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
           +G+ + G G  AL+LFEEM    + P+ +T +  L ACSHSGL+ EG++ F +M   +G 
Sbjct: 503 SGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGF 562

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
            P++EH+ CMVDL GRAGLL++A E+I  MP  P  A++ + L AC++H+N  +GEWAA+
Sbjct: 563 TPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAK 622

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
           + L   P  SGY VL++N+YA+   W  +A +R  M+D G+ K PG + ++   +   F+
Sbjct: 623 QFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFI 682

Query: 666 VDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           + D  +  A+++Y ++  + E ++DAGY 
Sbjct: 683 MGDREHPDAKKVYEMIDEMREKLEDAGYT 711



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 226/492 (45%), Gaps = 57/492 (11%)

Query: 130 FLVENSNIRYPLPW-------------NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
           F+  +SN  Y +P              + LI+ Y+++   A+A  +Y  M+      DNF
Sbjct: 66  FIKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNF 125

Query: 177 TYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
             PSVLKAC  +     G+ VH   +       +FV NAL+ MY + G + +AR LFDK+
Sbjct: 126 VIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKI 185

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             +D VSW+TMI +Y   GL  EA  L  +M                             
Sbjct: 186 ENKDVVSWSTMIRSYDRSGLLDEALDLLRDMH---------------------------- 217

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG--CYGEYENVRNALIT 353
             + R++  E  + S+  V+     + +  LKLGK +H   +R   C      +  ALI 
Sbjct: 218 --VMRVKPSEIGMISITHVL-----AELADLKLGKAMHAYVMRNGKCGKSGVPLCTALID 270

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY +C++L +A  +F   ++ SII+W +M++ Y H +   E   LF +M   G+ PN +T
Sbjct: 271 MYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEIT 330

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           + S++  C     L+ GK  H + LR   F   L+L  + ++MY + G V  A+SVFD  
Sbjct: 331 MLSLVKECGTAGALELGKLLHAFTLRNG-FTLSLVLATAFIDMYGKCGDVRSARSVFDSF 389

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             +D + ++++I+ Y        A  +F  M    I+P+  TMV++L  C+ +G  +E  
Sbjct: 390 KSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAG-SLEMG 448

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           K         GI   +      VD+Y   G ++ A  +  +      S MW  ++    +
Sbjct: 449 KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDIS-MWNAMISGFAM 507

Query: 594 HRNTGIGEWAAE 605
           H   G GE A E
Sbjct: 508 H---GHGEAALE 516


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 199/626 (31%), Positives = 331/626 (52%), Gaps = 60/626 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-ENSNIRYPLP 142
           C   + L +GKQLH+  I  G   +P  +  L+  Y+       A  +  +  + R    
Sbjct: 21  CADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFA 80

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           +N +IS +V +G  ++    YK+M+   +  D +T+P V++ C E+M+V   + +H C+ 
Sbjct: 81  YNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHGCLL 137

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               E  +FV +ALV+ Y K G ++ A+++F ++  RD                      
Sbjct: 138 KMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRD---------------------- 175

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGAC 320
                        V+ WN +  G  + G     LE+  RM  +     S  T+ G L   
Sbjct: 176 -------------VVLWNAMINGYAKIGCLDEALEVFRRMHVKGV-APSRFTITGILSVF 221

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           +  G L  GK +HG  ++  Y    +V NALI MY +CK +  A I+F+M  EK I +WN
Sbjct: 222 ASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWN 281

Query: 381 SMLSGYTHLDCAEESAFL--FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           S++S   H  C +    L  F +M  SG+ P+ VTI ++LP C+ +A L HG+E H Y++
Sbjct: 282 SIIS--VHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMI 339

Query: 439 RRAMFNE-------HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
              +  +       +LL+ N++++MYA+ G +  A  +FD MS++D  ++  +I GYG+ 
Sbjct: 340 INGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMH 399

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G    AL +F +M + + KP+ VT+V VLSAC+H+G V  G+    +M S +G+ P +EH
Sbjct: 400 GYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEH 459

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + C++D+ GRAG L  A EI+ KMP      +W  LLGAC++H N  + E AA ++L+  
Sbjct: 460 YTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLE 519

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           PE+ G YVL++N+Y   G ++++ +VR  M++  V+K PGC+W++  +    F   D ++
Sbjct: 520 PEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELKDGVHVFRTGDRTH 579

Query: 672 VQAQEIYPLLGGLTELMKDAGYVVKE 697
            +       L  LT  + D G+++ E
Sbjct: 580 SE-------LNALTNQLCDIGFILDE 598



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 136/289 (47%), Gaps = 22/289 (7%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKS 375
           L +C+    L  GK++H   +   +        +LI MYS+C  +  A ++F     E++
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +  +N+++SG+     A +    +++M   GV P+  T   ++  C  V  +   K+ H 
Sbjct: 78  VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHG 134

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            +L+  +    + + ++LV  Y ++G + +A+ VF  +S RD V + ++I GY   G   
Sbjct: 135 CLLKMGL-ELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLD 193

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-- 553
            AL++F  M+   + P   T+  +LS  +  G +  G+       +++GI  ++ + +  
Sbjct: 194 EALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGK-------TVHGIVMKMGYDSGV 246

Query: 554 ----CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
                ++D+YG+   +  A  II +M        W +++    +H   G
Sbjct: 247 SVSNALIDMYGKCKHIGDAL-IIFEMINEKDIFSWNSII---SVHEQCG 291



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N     + L  CA   NL  GK+ H  ++    F+       SL+ MY++ G++ EA  V
Sbjct: 10  NVTKCVAFLQSCADHQNLNKGKQLHSLMITYG-FSPSPPSITSLINMYSKCGQMGEAILV 68

Query: 470 F-DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           F D    R+   Y ++I+G+   G      + +++M    + PD  T   V+  C
Sbjct: 69  FYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTC 123


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 195/644 (30%), Positives = 336/644 (52%), Gaps = 39/644 (6%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  +A   F  ++++  S D V  + A ++  C  V  L +GKQLH+  +  G+  + +
Sbjct: 223 GHGDRALGIFDEMQLSGLSPDSV--TIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYI 280

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  Y        A  + ++ +    + WNL++  Y +    A++  ++ +M +  
Sbjct: 281 MEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAG 340

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +R + FTYP +L+ C    ++  G  +HS  I    +  ++V   L+ MY K+G +D A+
Sbjct: 341 VRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQ 400

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+ D + E+D                                   V++W ++  G ++  
Sbjct: 401 RILDMIEEKD-----------------------------------VVSWTSMIAGYVQHE 425

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
             K  LE    M+    + D++     + AC+ + A+  G +IH       Y    ++ N
Sbjct: 426 FCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWN 485

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
            L+ +Y+RC   + A+  F+    K  ITWN ++SG+      EE+  +F +M ++G + 
Sbjct: 486 GLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKY 545

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T  S +   A +A+++ GK+ H  +++    +E   + N+L+ +Y + G + +AK  
Sbjct: 546 NVFTFVSSISASANLADIKQGKQIHARVIKTGYTSE-TEISNALISLYGKCGSIEDAKMD 604

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F  M++R+EV++ ++I      G G  AL LF++M +  +KP  VT V VL+ACSH GLV
Sbjct: 605 FFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLV 664

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG   F+ M++ +GI P+ +H+AC+VD+ GRAG L++AK  + +MP    S +W TLL 
Sbjct: 665 EEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLS 724

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++H+N  IGE+AA+ LLE  P +S  YVL++N YA TG W    ++R  M+D GVRK 
Sbjct: 725 ACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKE 784

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           PG +W++  NV   F V D  +  A +IY  L  L + +   GY
Sbjct: 785 PGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGY 828



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 224/475 (47%), Gaps = 38/475 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA AI  GL    ++   L+  YA       A  + E  ++R  + W  ++S Y ++G
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHN 213
              EA+ +Y++M    +    +   S+L AC +      GR++H  +     +S  FV N
Sbjct: 123 LGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGN 182

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           AL+S+Y +     +A R+F  ML  D+V++NT+IS +A  G    A  +F EMQ  G+  
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           + +T  ++                                   L ACS VG L+ GK++H
Sbjct: 243 DSVTIASL-----------------------------------LAACSAVGDLRKGKQLH 267

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              ++        +  +L+ +Y +  D+  A  +F      +++ WN ML  Y  +D   
Sbjct: 268 SYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLA 327

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           +S  +F  M  +GV PN  T   +L  C     +  G++ H   ++   F   + +   L
Sbjct: 328 KSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNG-FQSDMYVSGVL 386

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MY++ G + +A+ + D++  +D V++TS+IAGY      + AL+ F+EM    I PD+
Sbjct: 387 IDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDN 446

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + + + +SAC+    V +G +   R+  + G    +  +  +V LY R G+  +A
Sbjct: 447 IGLASAISACAGIKAVHQGSQIHARVY-VSGYSADVSIWNGLVYLYARCGISKEA 500



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 187/399 (46%), Gaps = 54/399 (13%)

Query: 191 VDFGRVVHSCIDACHEWSL-----------------FVHNALVSMYGKFGQVDVARRLFD 233
           VDF   + +C  +   W L                  + N L+ +Y K G V  ARR+F+
Sbjct: 42  VDFACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFE 101

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           ++  RD VSW  ++S YA  GL +EA +L+ EM   GV       ++I            
Sbjct: 102 ELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSI------------ 149

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                                  L AC+     +LG+ IH    +  +     V NALI+
Sbjct: 150 -----------------------LSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALIS 186

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           +Y RC+  R A  +F        +T+N+++SG+      + +  +F EM  SG+ P+ VT
Sbjct: 187 LYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVT 246

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           IAS+L  C+ V +L+ GK+ H Y+L+  M  ++++   SL+++Y +SG + EA  +FD  
Sbjct: 247 IASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIME-GSLLDLYVKSGDIEEALQIFDSG 305

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            R + V +  ++  YG   +   +  +F  M    ++P+  T   +L  C+H+G +  G+
Sbjct: 306 DRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGE 365

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            Q   +T   G    +     ++D+Y + G L+KA+ I+
Sbjct: 366 -QIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRIL 403



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 4/315 (1%)

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA-LKLGKEIHGS 335
           ++N    G L   + + +L L +    Q   L +V     L AC   G    L  EIH  
Sbjct: 8   SFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPEIHAK 67

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           A+      Y  + N LI +Y++   +R A  +F+  + +  ++W ++LSGY      EE+
Sbjct: 68  AIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEA 127

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             L+REM RSGV P    ++SIL  C +    Q G+  H  + ++  F+E   + N+L+ 
Sbjct: 128 VRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSE-TFVGNALIS 186

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           +Y R      A  VF  M   D VT+ +LI+G+   G G  AL +F+EM  + + PD VT
Sbjct: 187 LYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVT 246

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           + ++L+ACS  G + +G KQ        G+         ++DLY ++G + +A +I    
Sbjct: 247 IASLLAACSAVGDLRKG-KQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSG 305

Query: 576 PYTPTSAMWATLLGA 590
             T    +W  +L A
Sbjct: 306 DRTNV-VLWNLMLVA 319


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 221/701 (31%), Positives = 358/701 (51%), Gaps = 78/701 (11%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN---ACFL 131
           D F  ++  C   +A  +G ++++ A++     N + V     F A F  + N   A ++
Sbjct: 95  DVFVALVRLCEWKRAHEEGSKVYSVALS---SMNSLSVELGNAFLAMFVRFGNLVDAWYV 151

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMD 190
               + R    WN+L+  Y + G++ EA+C+Y +M     ++ D +T+P VL+ CG + D
Sbjct: 152 FGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPD 211

Query: 191 VDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +  GR VH   +   +E  + V NAL++MY K G V  AR LFD+M  RD +SWN MIS 
Sbjct: 212 LARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISG 271

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC------------------------ 285
           Y   G+  E  +LF  M+   V+ +++T  ++   C                        
Sbjct: 272 YFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVD 331

Query: 286 -----------LRTGNFKGVLELLSRM----------------------RTQETYL---- 308
                      L  G+++   +L SRM                      +  +TY     
Sbjct: 332 ISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQ 391

Query: 309 -----DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
                D +     L AC+ +G L  G E+H  A++     Y  V N LI MYS+CK +  
Sbjct: 392 DSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDK 451

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           A  +F     K++I+W S+++G    +   E+   FR+M +  ++PN +T+ + L  CAR
Sbjct: 452 ALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM-KMTLQPNAITLTAALAACAR 510

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           +  L  GKE H ++LR  +  +  L  N+L++MY R G++  A + F+   ++D  ++  
Sbjct: 511 IGALMCGKEIHAHVLRTGVGLDDFLP-NALLDMYVRCGRMNIAWNQFN-SQKKDVSSWNI 568

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           L+ GY  +G+G V ++LF+ M K +++PD +T +++L  C  S +V +G   F +M   Y
Sbjct: 569 LLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEE-Y 627

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           G+ P L+H+AC+VDL GRAG L +A + I KMP TP  A+W  LL AC+IH N  +GE +
Sbjct: 628 GVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELS 687

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
           A+++ E    + GYY+L+ N+YA  G W ++AKVR  M++ G+    GC+WV+       
Sbjct: 688 AQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHA 747

Query: 664 FLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
           FL DD  + Q +EI  +L G  E M + G     E  S +E
Sbjct: 748 FLSDDKYHPQTKEINTVLDGFYEKMSEVGLTTSSESSSMDE 788



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 151/312 (48%), Gaps = 12/312 (3%)

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G    G  +  ++LL+ M+     +D    V  +  C    A + G +++  A+      
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSL 127

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF-REM 402
              + NA + M+ R  +L  A+ +F   +E+++ +WN ++ GY      +E+  L+ R +
Sbjct: 128 SVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRML 187

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
           +  GV+P+  T   +L  C  + +L  G+E H +++R   +   + + N+L+ MY + G 
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYG-YELDIDVVNALITMYVKCGD 246

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           V  A+ +FD M RRD +++ ++I+GY   G G   LKLF  M    + PD +T+ +V+SA
Sbjct: 247 VKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISA 306

Query: 523 CSHSGLVVEGQKQFERMTSIY----GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           C      + G ++  R    Y    G    +     +  +Y  AG   +A+++ ++M   
Sbjct: 307 CE-----LLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCK 361

Query: 579 PTSAMWATLLGA 590
              + W T++  
Sbjct: 362 DIVS-WTTMISG 372


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 202/624 (32%), Positives = 335/624 (53%), Gaps = 47/624 (7%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           AG G   + +    RI +    H     +F  ++  C     + +G+++H   + LG E 
Sbjct: 20  AGVGGGLEVYNQMVRIGVRPDDH-----TFPFVLKACADAFEVRKGREVHGSVVKLGFES 74

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF-YAEALCVYKQM 166
           +  +   L++FY +     +A  + +    +  + WN +I ++  +G+ Y +AL +++ M
Sbjct: 75  DVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLM 134

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQV 225
               ++ ++ T  S L    E+     GR VH S I    E  +F+ N+L+ MY K G  
Sbjct: 135 IDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHS 194

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A  +F K+  ++ VSWN MI+ +A       A  L  +MQ+ G   N +T+  +    
Sbjct: 195 TEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNV---- 250

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEY 344
                                          L AC+ +G ++ GKEIH  ++  GC  + 
Sbjct: 251 -------------------------------LPACARMGLVRPGKEIHARSIHMGCAFDL 279

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V NAL  MY++   L+ A  +F  T+ +  +++N ++ G++      ES  LF EM  
Sbjct: 280 -FVSNALTDMYAKSGHLKLARNVFD-TSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQL 337

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G++ + V+    L  CA +  ++ GKE H ++LR+ +F+ HL + NSL++ Y + G++ 
Sbjct: 338 MGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRK-LFHIHLFVANSLLDFYTKCGRIG 396

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A+++FD M+ +D  ++ ++I GYG+ GE   A+ LFE M K+ ++ D V+ +AVLSACS
Sbjct: 397 LARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACS 456

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GL+ +G+K F+ + +  GI P   H+ACMVDL GRAGL+ +A E+I  +P  P + +W
Sbjct: 457 HGGLLEKGRKYFDELKA-RGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIW 515

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LLGAC+I+ N  +  WAAE L E +PE+SGYY L++NMYA TG WD+  ++R  M+  
Sbjct: 516 GALLGACRIYGNLELAAWAAEHLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSR 575

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDD 668
           GV+K PGC+WV  G     F+V +
Sbjct: 576 GVKKSPGCSWVQIGEQAHAFVVGE 599



 Score = 42.4 bits (98), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           R     + +LI GY I G G   L+++ +M +  ++PD  T   VL AC+ +  V +G++
Sbjct: 4   RTTAFLWNTLIRGYSIAGVGG-GLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGRE 62

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
               +  + G    +     ++  YG  G L  A  +  +MP     + W T++G   ++
Sbjct: 63  VHGSVVKL-GFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVS-WNTMIGVFSVN 120


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 214/653 (32%), Positives = 332/653 (50%), Gaps = 39/653 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L+  A R +L  A  AF  +   A+    VL +F  ++  C     LA G+ +HA   A 
Sbjct: 196 LRAAASRSDLRGALAAFAAMS-PASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAAR 254

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL    +    L   YA      +A  + +    R  + WN L++ Y R+G    A+ + 
Sbjct: 255 GLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMV 314

Query: 164 KQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
            +MQ     R D  T  SVL AC +   +   R VH+  +    +  + V  A++ +Y K
Sbjct: 315 VRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCK 374

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G VD AR++FD M +R                                   N ++WN +
Sbjct: 375 CGAVDSARKVFDGMQDR-----------------------------------NSVSWNAM 399

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
             G    G+    L L  RM  +   +  V+ +  L AC  +G L  G+ +H   VR   
Sbjct: 400 IKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGL 459

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               NV NALITMY +CK    A  +F     K+ ++WN+M+ G T    +E++  LF  
Sbjct: 460 ESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSR 519

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M    V+P+  T+ SI+P  A +++    +  H Y +R  + ++ + +  +L++MYA+ G
Sbjct: 520 MQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHL-DQDVYVLTALIDMYAKCG 578

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           +V  A+S+F+    R  +T+ ++I GYG  G G+VA++LFEEM  +   P+  T ++VLS
Sbjct: 579 RVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLS 638

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSH+GLV EGQ+ F  M   YG+ P +EH+  MVDL GRAG L++A   I KMP  P  
Sbjct: 639 ACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGI 698

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           +++  +LGAC++H+N  + E +A+++ E  PE   Y+VL+AN+YA    W  +A+VRT M
Sbjct: 699 SVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAM 758

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
              G++K PG + V   N    F    T++ QA++IY  L  L E +K  GYV
Sbjct: 759 EKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYV 811


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 219/655 (33%), Positives = 336/655 (51%), Gaps = 43/655 (6%)

Query: 44   LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
            ++ +A  G   K  E F  ++  ++ +++   +F  ++  C     L  G Q H+  I  
Sbjct: 400  IRGYAHNGESHKVMELFMDMK--SSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK 457

Query: 104  GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
             L KN  +   LV  YA      +A  + E    R  + WN +I  YV+D   +EA  ++
Sbjct: 458  KLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLF 517

Query: 164  KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
            K+M    I  D     S LKAC  +  +  G+ VH     C  +  L   ++L+ MY K 
Sbjct: 518  KRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKC 577

Query: 223  GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            G +  AR++F  + E   VS N +I+ Y+   L +EA  LF EM   GV  + IT+ TI 
Sbjct: 578  GIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATI- 635

Query: 283  GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV-RGCY 341
                                              + AC    +L LG + HG    RG  
Sbjct: 636  ----------------------------------VEACHKPESLTLGTQFHGQITKRGFS 661

Query: 342  GEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
             E E +  +L+ MY   + +  A  LF ++++ KSI+ W  M+SG++     EE+   ++
Sbjct: 662  SEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYK 721

Query: 401  EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            EM   GV P+  T  ++L +C+ +++L+ G+  H  I   A  +   L  N+L++MYA+ 
Sbjct: 722  EMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLA-HDLDELTSNTLIDMYAKC 780

Query: 461  GKVPEAKSVFDLMSRRDEV-TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  +  VFD M RR  V ++ SLI GY   G    ALK+F+ M ++ I PD +T + V
Sbjct: 781  GDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGV 840

Query: 520  LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
            L+ACSH+G V +G+K FE M   YGI  +++H ACMVDL GR G L +A + I      P
Sbjct: 841  LTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKP 900

Query: 580  TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
             + +W++LLGAC+IH +   GE +AEKL+E  P+NS  YVL++N+YA+ GCW+K   +R 
Sbjct: 901  DARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRK 960

Query: 640  CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             MRD GV+K+PG +W+D       F   D S+ +  +I   L  L +LMKD   V
Sbjct: 961  VMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMFLEDLYDLMKDDAVV 1015



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 161/612 (26%), Positives = 283/612 (46%), Gaps = 88/612 (14%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHII------------FCCGKVK------------- 88
           S  F++F+ +R  + S D+    + H++             C G+ K             
Sbjct: 11  SAMFDSFSFVRRLSYSPDLGRRIYGHVLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQ 70

Query: 89  ----ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL--- 141
               AL  GK +H+ ++ LG++    L   +V  YA        C  V  +  ++     
Sbjct: 71  RLALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAK-------CAQVSYAEKQFDFLEK 123

Query: 142 ---PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
               WN ++S+Y   G   + L  +  +   +I  + FT+  VL  C    +V+FGR +H
Sbjct: 124 DVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIH 183

Query: 199 -SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            S I    E + +   ALV MY K  ++  ARR+F+ +++ + V W  + S Y   GL +
Sbjct: 184 CSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPE 243

Query: 258 EAFQLFVEMQEEG--------VEV-----------------------NVITWNTIAGGCL 286
           EA  +F  M++EG        V V                       +V+ WN +  G  
Sbjct: 244 EAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHG 303

Query: 287 RTGNFKGVLELLSRMR-----TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
           + G     +E    MR     +  + L SV + IG+     V  L LG  +H  A++   
Sbjct: 304 KRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGI-----VANLDLGLVVHAEAIKLGL 358

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V ++L++MYS+C+ +  A  +F+   EK+ + WN+M+ GY H   + +   LF +
Sbjct: 359 ASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMD 418

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG   +  T  S+L  CA   +L+ G +FH  I+++ +  ++L + N+LV+MYA+ G
Sbjct: 419 MKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKL-AKNLFVGNALVDMYAKCG 477

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV-ALKLFEEMNKNQIKPDHVTMVAVL 520
            + +A+ +F+ M  RD VT+ ++I  Y +Q E    A  LF+ MN   I  D   + + L
Sbjct: 478 ALEDARQIFERMCDRDNVTWNTIIGSY-VQDENESEAFDLFKRMNLCGIVSDGACLASTL 536

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
            AC+H   + +G KQ   ++   G+   L   + ++D+Y + G++  A+++ + +P    
Sbjct: 537 KACTHVHGLYQG-KQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSV 595

Query: 581 SAMWATLLGACQ 592
            +M A + G  Q
Sbjct: 596 VSMNALIAGYSQ 607



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/475 (23%), Positives = 211/475 (44%), Gaps = 43/475 (9%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN++IS + + G    A+  +  M+   ++    T  SVL A G + ++D G VVH+ 
Sbjct: 293 VAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAE 352

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            I      +++V ++LVSMY K  +++ A ++F+ + E+                     
Sbjct: 353 AIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEK--------------------- 391

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
                         N + WN +  G    G    V+EL   M++    +D       L  
Sbjct: 392 --------------NDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+    L++G + H   ++    +   V NAL+ MY++C  L  A  +F+   ++  +TW
Sbjct: 438 CAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTW 497

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+++  Y   +   E+  LF+ M   G+  +   +AS L  C  V  L  GK+ HC  ++
Sbjct: 498 NTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVK 557

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             + +  L   +SL++MY++ G + +A+ VF  +     V+  +LIAGY  Q     A+ 
Sbjct: 558 CGL-DRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYS-QNNLEEAVV 615

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDL 558
           LF+EM    + P  +T   ++ AC     +  G  QF    +  G   + E+    ++ +
Sbjct: 616 LFQEMLTRGVNPSEITFATIVEACHKPESLTLGT-QFHGQITKRGFSSEGEYLGISLLGM 674

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           Y  +  + +A  + +++    +  +W  ++     H   G  E A +   E R +
Sbjct: 675 YMNSRGMTEACALFSELSSPKSIVLWTGMMSG---HSQNGFYEEALKFYKEMRHD 726


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 193/530 (36%), Positives = 296/530 (55%), Gaps = 16/530 (3%)

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL------FVHNALVSMYGKFG 223
           R+R    T   ++ A   + D   GR VH     C    L      F  + LV MY K G
Sbjct: 144 RVRPSRITMSGMVMAASALGDRALGRQVH-----CQIMRLGFGAYAFTWSPLVDMYAKMG 198

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +  A+R+FD+M+ ++ V +NTMI+      + +EA  +F  M    V+ + ITW T+  
Sbjct: 199 LIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAM----VDRDSITWTTMVT 254

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G  + G     L++  RMR +   +D       L AC  + A + GK+IH   +R  Y  
Sbjct: 255 GLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDG 314

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V +AL+ MYS+C+ +R A  +F+    K+II+W +M+ GY    C EE+  +F EM 
Sbjct: 315 NIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQ 374

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
             G++PN  T+ S++  CA +A+L+ G +FHC  L   +   ++ + ++LV +Y + G +
Sbjct: 375 TDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGL-RPYITVSSALVTLYGKCGSI 433

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A  +FD M   D+V+YT+L++GY   G+ +  + LFE+M    +KP+ VT + VLSAC
Sbjct: 434 EDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSAC 493

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           S SGLV +G   F  M   +GI    +H+ CM+DLY R+G L +A+E I +MP  P +  
Sbjct: 494 SRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIG 553

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           WATLL AC++  +  IG+WAAE LL+T P+N   YVL+ +M+A+ G W ++A +R  MRD
Sbjct: 554 WATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRD 613

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
             V+K PGC+W+   N    F  DD S+  +  IY  L  L   M + GY
Sbjct: 614 RQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGY 663



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 224/467 (47%), Gaps = 44/467 (9%)

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           H    +V N L++ Y + G++ +ARRLFD M + +  + N ++SA A   L  +  +LF 
Sbjct: 41  HPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFA 100

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD------SVATVIGL- 317
            M +     + +++N +  G    G           +  +E  +D      S  T+ G+ 
Sbjct: 101 SMPQR----DAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMV 156

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS--------------------- 356
            A S +G   LG+++H   +R  +G Y    + L+ MY+                     
Sbjct: 157 MAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVV 216

Query: 357 ----------RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
                     RCK +  A  +F+   ++  ITW +M++G T      E+  +FR M   G
Sbjct: 217 MYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEG 276

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           V  +  T  SIL  C  +A  + GK+ H Y + R +++ ++ + ++LV+MY++   +  A
Sbjct: 277 VGIDQYTFGSILTACGALAASEEGKQIHAYTI-RTLYDGNIFVGSALVDMYSKCRSIRLA 335

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           ++VF  M+ ++ +++T++I GYG  G G  A+++F EM  + IKP+  T+ +V+S+C++ 
Sbjct: 336 EAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANL 395

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
             + EG  QF  M  + G+ P +   + +V LYG+ G +  A  +  +MP+    +  A 
Sbjct: 396 ASLEEG-AQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTAL 454

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
           + G  Q  +     +   + LL+    N   ++ + +  + +G  +K
Sbjct: 455 VSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEK 501



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 207/426 (48%), Gaps = 53/426 (12%)

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN V+   ++T      +   A  + E    R  + W  +++   ++G  +EAL V+++M
Sbjct: 213 KNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRM 272

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           ++  +  D +T+ S+L ACG +   + G+ +H+  I   ++ ++FV +ALV MY K   +
Sbjct: 273 RAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSI 332

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            +A  +F +M  ++ +SW  MI  Y   G  +EA ++F EMQ +G++ N  T  ++    
Sbjct: 333 RLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSV---- 388

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          + +C+++ +L+ G + H  A+      Y 
Sbjct: 389 -------------------------------ISSCANLASLEEGAQFHCMALVSGLRPYI 417

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V +AL+T+Y +C  +  A+ LF        +++ +++SGY     A+E+  LF +M   
Sbjct: 418 TVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLK 477

Query: 406 GVEPNYVTIASILPLCARVANLQHG-KEFHCYILRRAMFNEHLLL-----WNSLVEMYAR 459
           GV+PN VT   +L  C+R   ++ G   FH      +M  +H ++     +  ++++Y+R
Sbjct: 478 GVKPNGVTFIGVLSACSRSGLVEKGCSYFH------SMQQDHGIVLLDDHYTCMIDLYSR 531

Query: 460 SGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           SG++ EA+     M R  D + + +L++   ++G+    +++ +   +N +K D     +
Sbjct: 532 SGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGD----MEIGKWAAENLLKTDPQNPAS 587

Query: 519 VLSACS 524
            +  CS
Sbjct: 588 YVLLCS 593



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 122/241 (50%), Gaps = 5/241 (2%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G  S+A + F R+R      D    +F  I+  CG + A  +GKQ+HA  I    + N  
Sbjct: 260 GLQSEALDVFRRMRAEGVGIDQY--TFGSILTACGALAASEEGKQIHAYTIRTLYDGNIF 317

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   LV  Y+       A  +      +  + W  +I  Y ++G   EA+ V+ +MQ+  
Sbjct: 318 VGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDG 377

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVHNALVSMYGKFGQVDVA 228
           I+ ++FT  SV+ +C  +  ++ G   H  + +     + + V +ALV++YGK G ++ A
Sbjct: 378 IKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPY-ITVSSALVTLYGKCGSIEDA 436

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            RLFD+M   D VS+  ++S YA  G  KE   LF +M  +GV+ N +T+  +   C R+
Sbjct: 437 HRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRS 496

Query: 289 G 289
           G
Sbjct: 497 G 497



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 3/182 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C  + +L +G Q H  A+  GL     +   LVT Y       +A  L +  
Sbjct: 384 TLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEM 443

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + +  L+S Y + G   E + ++++M  + ++ +  T+  VL AC     V+ G 
Sbjct: 444 PFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGC 503

Query: 196 VVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYAS 252
                +   H   L    +  ++ +Y + G++  A     +M    DA+ W T++SA   
Sbjct: 504 SYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRL 563

Query: 253 KG 254
           +G
Sbjct: 564 RG 565


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/586 (33%), Positives = 296/586 (50%), Gaps = 70/586 (11%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN +I+ Y +      AL VY Q++      DNF  PSVLKACG++     G+ +H   +
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               +  +FV NAL+ MYG+   V+ AR +FDKM+ERD                      
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD---------------------- 189

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                        V++W+T+     R   F   LEL+  M   +     VA V  +   +
Sbjct: 190 -------------VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFA 236

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENV--RNALITMYSRC--------------------- 358
               +++GK +H   +R    E+  V    AL+ MY++C                     
Sbjct: 237 DTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSW 296

Query: 359 ----------KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
                       L  A  LF  T  + ++ W +MLS Y   +C +++  LF +M  SGV 
Sbjct: 297 TAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 356

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P  VTI S+L LCA    L  GK  H YI  +       +L  +LV+MYA+ G +  A  
Sbjct: 357 PTKVTIVSLLSLCAVAGALDLGKWVHSYI-DKERVEVDCILNTALVDMYAKCGDINAAGR 415

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           +F     RD   + ++I G+ + G G  AL +F EM +  +KP+ +T + +L ACSH+GL
Sbjct: 416 LFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL 475

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           V EG+K FE+M   +G+ PQ+EH+ CMVDL GRAGLL++A E+I  MP  P + +W  L+
Sbjct: 476 VTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 535

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
            AC++H+N  +GE AA +LLE  PEN GY VL++N+YAA   W   A VR  M+ +G++K
Sbjct: 536 AACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKK 595

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            PG + ++       FL+ D S+ Q + I  +L  +   + +AGYV
Sbjct: 596 EPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYV 641



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 199/451 (44%), Gaps = 16/451 (3%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAI 101
           +  +  R     A   + ++R      D  +D+F    ++  CG+V     GK++H   +
Sbjct: 96  ITSYTKRNQPRNALNVYAQLR----KMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
             GL+++  +   L+  Y   +    A  + +    R  + W+ +I    R+  +  AL 
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSM 218
           + ++M   ++R       S++    +  ++  G+ +H+ +          +    AL+ M
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G + +AR+LF+ + ++  VSW  MI+        +EA  LF   Q      +V+ W
Sbjct: 272 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNR----DVMIW 327

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
             +     +         L  +MRT       V  V  L  C+  GAL LGK +H S + 
Sbjct: 328 TAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVH-SYID 386

Query: 339 GCYGEYENVRN-ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
               E + + N AL+ MY++C D+  A  LF     + I  WN++++G+      EE+  
Sbjct: 387 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALD 446

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           +F EM R GV+PN +T   +L  C+    +  GK+    ++        +  +  +V++ 
Sbjct: 447 IFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLL 506

Query: 458 ARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
            R+G + EA  +   M  + + + + +L+A 
Sbjct: 507 GRAGLLDEAHEMIKSMPIKPNTIVWGALVAA 537



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 109/249 (43%), Gaps = 12/249 (4%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +A    + +AF  F ++R +      V  +   ++  C    AL  GK +H+     
Sbjct: 331 LSAYAQANCIDQAFNLFDQMRTSGVRPTKV--TIVSLLSLCAVAGALDLGKWVHSYIDKE 388

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            +E + +L   LV  YA     N A  L   +  R    WN +I+ +   G+  EAL ++
Sbjct: 389 RVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIF 448

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV----HNALVSMY 219
            +M+ + ++ ++ T+  +L AC     V  G+ +   +   H + L      +  +V + 
Sbjct: 449 AEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKM--VHTFGLVPQIEHYGCMVDLL 506

Query: 220 GKFGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNV 275
           G+ G +D A  +   M ++ + + W  +++A   + +  L + A    +E++ E    NV
Sbjct: 507 GRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNV 566

Query: 276 ITWNTIAGG 284
           +  N  A  
Sbjct: 567 LMSNIYAAA 575


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 218/630 (34%), Positives = 326/630 (51%), Gaps = 44/630 (6%)

Query: 88  KALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           K+L Q  QLHA     G L +N  L  KL   YA       A  + +   ++    WN +
Sbjct: 36  KSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSM 95

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH 205
           I  Y  +   + AL +Y +M     + DNFTYP VLKACG+++  + GR VH+  +    
Sbjct: 96  IRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGL 155

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           E  ++V N+++SMY KFG V+ AR +FD+ML RD  SW                      
Sbjct: 156 EEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSW---------------------- 193

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
                        NT+  G ++ G  +G  E+   MR      D    +  L AC  V  
Sbjct: 194 -------------NTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMD 240

Query: 326 LKLGKEIHGSAVR-GCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           LK+GKEIHG  VR G  G   N  + N++I MY  C+ +  A  LF+    K +++WNS+
Sbjct: 241 LKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSL 300

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SGY     A ++  LF  M   G  P+ VT+ S+L  C +++ L+ G     Y+++R  
Sbjct: 301 ISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRG- 359

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           +  ++++  +L+ MYA  G +  A  VFD M  ++    T ++ G+GI G GR A+ +F 
Sbjct: 360 YVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFY 419

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           EM    + PD     AVLSACSHSGLV EG++ F +MT  Y + P+  H++C+VDL GRA
Sbjct: 420 EMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRA 479

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G L++A  +I  M   P   +W  LL AC++HRN  +   +A+KL E  P+    YV ++
Sbjct: 480 GYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLS 539

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+YAA   W+ +  VR  +    +RK P  ++V+   +   F V DTS+ Q+ +IY  L 
Sbjct: 540 NIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLK 599

Query: 683 GLTELMKDAGYVVKEE---FCSEEEIVEEI 709
            L E +K AGY        +  EEEI E++
Sbjct: 600 DLNEQLKKAGYKPDTSLVLYDVEEEIKEKM 629



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 204/455 (44%), Gaps = 50/455 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  CG +     G+++HA  +  GLE++  +   +++ Y  F     A  + +  
Sbjct: 126 TYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRM 185

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R    WN ++S +V++G    A  V+  M+     GD  T  ++L ACG++MD+  G+
Sbjct: 186 LVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGK 245

Query: 196 VVHSCI----DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            +H  +    ++    + F+ N+++ MY     V  AR+LF+ +  +D VSWN++IS Y 
Sbjct: 246 EIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYE 305

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G   +AFQ                                 LEL  RM       D V
Sbjct: 306 KCG---DAFQ--------------------------------ALELFGRMVVVGAVPDEV 330

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
             +  L AC+ + AL+LG  +    V+  Y     V  ALI MY+ C  L  A  +F   
Sbjct: 331 TVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEM 390

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            EK++     M++G+       E+  +F EM   GV P+     ++L  C+    +  GK
Sbjct: 391 PEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGK 450

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGI 490
           E    + R          ++ LV++  R+G + EA +V + M  + +E  +T+L++   +
Sbjct: 451 EIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRL 510

Query: 491 QGEGRVAL----KLFEEMNKNQIKPDHVTMVAVLS 521
               ++A+    KLFE      + PD V+    LS
Sbjct: 511 HRNVKLAVISAQKLFE------LNPDGVSGYVCLS 539


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 223/703 (31%), Positives = 351/703 (49%), Gaps = 91/703 (12%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   GNL +A E   +    +   D+ L ++  ++  C  +K++  G+++H+   +  +E
Sbjct: 78  FCELGNLRRAMELINQ----SPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVE 133

Query: 107 KNPVLVPKLVTFYA--------------------------------------SFSLYN-- 126
            + VL  KLV  Y                                       S SL+   
Sbjct: 134 VDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRM 193

Query: 127 ---------NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFT 177
                    +A  L +    R  + WN +IS YV +G   + L +++QM    I  D  T
Sbjct: 194 RELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLAT 253

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
             SV+  C     +  GR +H   I A     L ++N L+ MY K G ++ A ++F+ M 
Sbjct: 254 MVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG 313

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           ER  VSW +MI+ YA +GL   + +LF EM++EG+  ++ T  TI               
Sbjct: 314 ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTI--------------- 358

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                               L AC+  G L+ GK++H             V NAL+ MY+
Sbjct: 359 --------------------LHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYA 398

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +C  +  A+ +F     K I++WN+M+ GY+      E+  LF EM +   +PN +T+A 
Sbjct: 399 KCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMAC 457

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           ILP CA +A L+ G+E H +ILR   F+    + N+LV+MY + G +  A+ +FD++  +
Sbjct: 458 ILPACASLAALERGQEIHGHILRNG-FSLDRHVANALVDMYLKCGALGLARLLFDMIPEK 516

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D V++T +IAGYG+ G G  A+  F EM  + I+PD V+ +++L ACSHSGL+ EG   F
Sbjct: 517 DLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFF 576

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
             M +   I P+ EH+AC+VDL  RAG L+KA + I  MP  P + +W  LL  C+I+ +
Sbjct: 577 NMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHD 636

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             + E  AE + E  PEN+GYYVL+AN+YA    W+++ K+R  +   G+RK PGC+W++
Sbjct: 637 VKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIE 696

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
                  F+  D+S+  A +I  LL      MK+ G+  K  +
Sbjct: 697 IKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRY 739



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 215/480 (44%), Gaps = 42/480 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G   K  + F ++ +   + D  L +   ++  C     L  G+ LH  AI  
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTD--LATMVSVVAGCSNTGMLLLGRALHGYAIKA 280

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
              K   L   L+  Y+     N+A  + E    R  + W  +I+ Y R+G    ++ ++
Sbjct: 281 SFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLF 340

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKF 222
            +M+   I  D FT  ++L AC     ++ G+ VH+ I      S LFV NAL+ MY K 
Sbjct: 341 HEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKC 400

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +  A  +F +M  +D VSWNTMI  Y+   L  EA  LFVEMQ           N+I 
Sbjct: 401 GSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKP------NSIT 454

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
             C+                              L AC+ + AL+ G+EIHG  +R  + 
Sbjct: 455 MACI------------------------------LPACASLAALERGQEIHGHILRNGFS 484

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
              +V NAL+ MY +C  L  A +LF M  EK +++W  M++GY       E+   F EM
Sbjct: 485 LDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEM 544

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             SG+EP+ V+  SIL  C+    L  G  F   +            +  +V++ AR+G 
Sbjct: 545 RNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGN 604

Query: 463 VPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           + +A     +M    D   + +L+ G  I  + ++A K+ E +   +++P++     +L+
Sbjct: 605 LSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHV--FELEPENTGYYVLLA 662


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 207/635 (32%), Positives = 327/635 (51%), Gaps = 50/635 (7%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L+  +  HA  +   +     L+  LV+ YA      +A  + +   +R    +N L+S 
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 150 YVRDGFYAEALCVYKQMQ--------------SRRIRG--------------DNF----- 176
           Y R G   EA  +++ +               +R  RG              D+F     
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAY 152

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           ++ S L AC    D   G  VH  +  + H   + + +ALV MY K  + + ARR+FD M
Sbjct: 153 SFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
            ER+ VSWN++I+ Y   G   EA  LFVEM   G   + +T +++   C      +   
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGR 272

Query: 296 ELLSRM----RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
           ++ + M    R ++  + + A V     C      +   +   S  R    E      ++
Sbjct: 273 QVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPS--RSIVSE-----TSI 325

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           +T Y++  ++  A ++F    EK++I WN +++ Y      EE+  LF ++ R  + P +
Sbjct: 326 LTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTH 385

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAM-FN----EHLLLWNSLVEMYARSGKVPEA 466
            T  ++L  C  +A+LQ G++ H ++L+    F+      + + NSLV+MY ++G + + 
Sbjct: 386 YTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDG 445

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
             VF+ M+ RD V++ ++I GY   G  + AL LFE M  +   PD VTM+ VLSAC HS
Sbjct: 446 AKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHS 505

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           GLV EG++ F  MT  +GI P  +H+ CMVDL GRAG L +A+E+I  MP  P S +WA+
Sbjct: 506 GLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWAS 565

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           LLGAC++H+N  +GEW A +L E  P+NSG YVL++NMYA  G W ++ +VR  M+D GV
Sbjct: 566 LLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGV 625

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
            K PGC+W++ G   + FL  D  +    EI+  L
Sbjct: 626 SKQPGCSWIEIGRKMNVFLARDKRHPCRNEIHNTL 660



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 202/452 (44%), Gaps = 23/452 (5%)

Query: 49  GRGNLSKAFEAFTRIRITAASH--DVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
           GRG+ + A      +R  AA H  D VL+  SFA  +  C   K    G+Q+H       
Sbjct: 128 GRGHAADA------LRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSP 181

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   LV  YA      +A  + +    R  + WN LI+ Y ++G   EAL ++ 
Sbjct: 182 HADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFV 241

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M +     D  T  SV+ AC  +     GR VH+ +  C      + ++NALV MY K 
Sbjct: 242 EMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKC 301

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+   AR +FD M  R  VS  ++++ YA     ++A  +F +M    VE NVI WN + 
Sbjct: 302 GRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQM----VEKNVIAWNVLI 357

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH----GSAVR 338
               + G  +  + L  +++    +         L AC ++  L+LG++ H        R
Sbjct: 358 AAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFR 417

Query: 339 GCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
             +G   +  V N+L+ MY +   +     +F+  A +  ++WN+M+ GY     A+++ 
Sbjct: 418 FDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDAL 477

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF  M  S   P+ VT+  +L  C     +  G+ +   +            +  +V++
Sbjct: 478 HLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDL 537

Query: 457 YARSGKVPEAKSVF-DLMSRRDEVTYTSLIAG 487
             R+G + EA+ +  D+    D V + SL+  
Sbjct: 538 LGRAGHLKEAEELINDMPMEPDSVLWASLLGA 569


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 204/671 (30%), Positives = 350/671 (52%), Gaps = 42/671 (6%)

Query: 24  KKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFC 83
           +K    I N+ +   NLL  + ++A  GN  ++   F +++      +    +F  ++ C
Sbjct: 149 RKIFDKIMNDKVFLWNLL--MSEYAKIGNFRESVSLFKKMQKLGVVGNCY--TFTCVLKC 204

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
              +  + + K++H   + LG   N  +V  L+  Y  F    +A  L +  +    + W
Sbjct: 205 FAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSW 264

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-ID 202
           N +I+  V +GF    L ++ QM    +  D  T  SVL AC  + ++  GR +H   + 
Sbjct: 265 NSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVK 324

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           AC    +   N L+ MY K G ++ A                                ++
Sbjct: 325 ACFSEEVVFSNTLLDMYSKCGNLNGAT-------------------------------EV 353

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           FV+M +      +++W +I    +R G +   + L   M+++    D       + AC+ 
Sbjct: 354 FVKMGD----TTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACAC 409

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
             +L  G+++H   ++   G    V NALI MY++C  +  A ++F     K I++WN+M
Sbjct: 410 SSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTM 469

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           + GY+      E+  LF +M +   +P+ +T+A +LP CA +A L  G+E H +ILRR  
Sbjct: 470 IGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGY 528

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F++ L +  +LV+MYA+ G +  A+ +FD++ ++D +++T +IAGYG+ G G  A+  F 
Sbjct: 529 FSD-LHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFN 587

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           EM    I+PD  +  A+L+ACSHSGL+ EG K F  M +  G+ P+LEH+AC+VDL  R 
Sbjct: 588 EMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARM 647

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G L+KA + I  MP  P + +W  LL  C+IH +  + E  AE + E  P+N+ YYV++A
Sbjct: 648 GNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLA 707

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+YA    W+++ K+R  M+  G ++ PGC+W++ G  F+ F+  ++ + QA++I  LL 
Sbjct: 708 NVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLS 767

Query: 683 GLTELMKDAGY 693
            LT  M++  Y
Sbjct: 768 KLTMQMQNEDY 778



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 177/623 (28%), Positives = 304/623 (48%), Gaps = 61/623 (9%)

Query: 31  NNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKAL 90
           N  H +  N    +  F   G+L  A E  T+    + S+++ L+S+  ++  C + K+L
Sbjct: 55  NTTHSVTQNQNAKINKFCEMGDLRNAIELLTK----SKSYELGLNSYCSVLQLCAEKKSL 110

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WN 144
             GK++H+  I+ G+  +  L  KLV  Y       N   LV+   I   +       WN
Sbjct: 111 EDGKRVHSVIISNGISVDEALGAKLVFMYV------NCGDLVQGRKIFDKIMNDKVFLWN 164

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
           LL+S Y + G + E++ ++K+MQ   + G+ +T+  VLK    +  V   + VH   +  
Sbjct: 165 LLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKL 224

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
               +  V N+L++ Y KFG V+ A  LFD++ E D VSWN+MI+     G      ++F
Sbjct: 225 GFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIF 284

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           ++M   GVEV++ T  ++                                   L AC+++
Sbjct: 285 IQMLILGVEVDLTTLVSV-----------------------------------LVACANI 309

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           G L LG+ +HG  V+ C+ E     N L+ MYS+C +L  A  +F    + +I++W S++
Sbjct: 310 GNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSII 369

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           + Y       ++  LF EM   GV P+  T+ SI+  CA  ++L  G++ H Y+++  M 
Sbjct: 370 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGM- 428

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
             +L + N+L+ MYA+ G V EA+ VF  +  +D V++ ++I GY        AL+LF +
Sbjct: 429 GSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLD 488

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC-MVDLYGRA 562
           M K Q KPD +TM  VL AC+    + +G++    +    G F  L H AC +VD+Y + 
Sbjct: 489 MQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILR-RGYFSDL-HVACALVDMYAKC 545

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIH--RNTGIGEWAAEKLLETRPENSGYYVL 620
           GLL  A+ +   +P     + W  ++    +H   N  I  +   ++    P+ S +  +
Sbjct: 546 GLLVLAQLLFDMIPKKDLIS-WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAI 604

Query: 621 IANMYAATGCWDKLAKVRTCMRD 643
           + N  + +G  ++  K    MR+
Sbjct: 605 L-NACSHSGLLNEGWKFFNSMRN 626


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 223/650 (34%), Positives = 330/650 (50%), Gaps = 77/650 (11%)

Query: 57  FEAFTRIRITAASHDVVLD---SFAHIIFCCGKV----KALAQGKQLHACAIALGLEKNP 109
           F  F   ++T++   + LD   S     F  G+V      L   + +H+  I+  L  N 
Sbjct: 16  FRKFQTRKVTSSVPKLELDQKNSPKETAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNS 75

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            L  KL+  YAS      A  + +    R  +  N++I  YV +GFY E + V+  M S 
Sbjct: 76  SLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSC 135

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVA 228
            ++ D++T+P VLKAC    ++  G+ +H S        +LFV N LVSMYGK G +  A
Sbjct: 136 HVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 195

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           R + D+M  RD                                   V++WN++  G  + 
Sbjct: 196 RLVLDEMSRRD-----------------------------------VVSWNSLVAGYAQN 220

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
             F   LE+   M + +   D+      L A S+                      ENV 
Sbjct: 221 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTT-------------------ENV- 260

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
                MY   KD+      FKM  +KS+++WN M+  Y       E+  L+  M   G E
Sbjct: 261 -----MY--VKDM-----FFKM-GKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFE 307

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+ V+I S+LP C   + L  GK+ H YI R+ +   +LLL N+L++MYA+ G +  A+ 
Sbjct: 308 PDAVSITSVLPACGDTSALSLGKKIHGYIERKKLI-PNLLLENALIDMYAKCGCLDRARD 366

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VF+ M  RD V++T++I+ YG  G G  A+ LF +M  + + PD +  V  L+ACSH+GL
Sbjct: 367 VFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGL 426

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           + EG+  F+ MT  Y I P+LEH ACMVDL GRAG + +A + I +MP  P   +W  LL
Sbjct: 427 LEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALL 486

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
           GAC++H NT IG  AA+KL +  PE SGYYVL++N+YA  G W+++  +R  M+  G++K
Sbjct: 487 GACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKK 546

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
            PG + V+   +   FLV D S+ Q+ EIY  L  L + MK+ GYV   E
Sbjct: 547 NPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSE 596



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 5/198 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A E ++ +       D V  S   ++  CG   AL+ GK++H       L  N +L   
Sbjct: 293 EAVELYSGMEADGFEPDAV--SITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 350

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  YA     + A  + EN   R  + W  +IS Y   G   +A+ ++ +MQ   +  D
Sbjct: 351 LIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPD 410

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLF 232
           +  + + L AC     ++ GR     +   ++ +  + +   +V + G+ G+V  A +  
Sbjct: 411 SIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFI 470

Query: 233 DKM-LERDAVSWNTMISA 249
            +M +E +   W  ++ A
Sbjct: 471 QEMPMEPNERVWGALLGA 488


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 215/650 (33%), Positives = 339/650 (52%), Gaps = 39/650 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G+++ A   F  +R  A+  D    + A  +  C     L  G QLH  A+  
Sbjct: 220 MDGYVKAGDVASAVGLFRVMR--ASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKY 277

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE    +   LV+ YA       A  L         + WN +IS  V++G   +AL ++
Sbjct: 278 GLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLF 337

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
             MQ   ++ D+ T  S+L A  E+     G+ +H  I   C    +F+ +ALV +Y K 
Sbjct: 338 CDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKC 397

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V +A+ +FD     D V  +TMIS Y    + + A ++F  +   G++ N +      
Sbjct: 398 RDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVM----- 452

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                       VA+   L AC+ + A+++G+E+HG  ++  Y 
Sbjct: 453 ----------------------------VAST--LPACASMAAMRIGQELHGYVLKNAYE 482

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V +AL+ MYS+C  L  ++ +F   + K  +TWNSM+S +      EE+  LFR+M
Sbjct: 483 GRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQM 542

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              GV+ N VTI+SIL  CA +  + +GKE H  I++  +    L   ++L++MY + G 
Sbjct: 543 IMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPI-RADLFAESALIDMYGKCGN 601

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  VF+ M  ++EV++ S+I+ YG  G  + ++ L   M +   K DHVT +A++SA
Sbjct: 602 LELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISA 661

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C+H+G V EG + F  MT  Y I PQ+EH +CMVDLY RAG L+KA + I  MP+ P + 
Sbjct: 662 CAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAG 721

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W  LL AC++HRN  + E A+++L +  P N GYYVL++N+ A  G WD ++K+R  M+
Sbjct: 722 IWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMK 781

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAG 692
           D  V+KIPG +WVD  N    F+  D ++  ++EIY  L  L   +K  G
Sbjct: 782 DKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSEEIYMSLKSLIIELKQEG 831



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/520 (28%), Positives = 257/520 (49%), Gaps = 39/520 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +  +++  C  + AL  G+ +H    ALGL+++  +   L+  YA   L + A  + +  
Sbjct: 149 TLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGM 208

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  + WN+++  YV+ G  A A+ +++ M++     +  T    L  C    D+  G 
Sbjct: 209 DERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGV 268

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+  +    E  + V N LVSMY K   ++ A RLF  M   D V+WN MIS     G
Sbjct: 269 QLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNG 328

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L  +A +LF +MQ+ G++ + +T  ++                                 
Sbjct: 329 LVDDALRLFCDMQKSGLQPDSVTLASL--------------------------------- 355

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L A + +   K GKEIHG  VR C      + +AL+ +Y +C+D+R A  +F  T   
Sbjct: 356 --LPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSI 413

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            ++  ++M+SGY     +E +  +FR +   G++PN V +AS LP CA +A ++ G+E H
Sbjct: 414 DVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELH 473

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            Y+L+ A +     + ++L++MY++ G++  +  +F  MS +DEVT+ S+I+ +   GE 
Sbjct: 474 GYVLKNA-YEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEP 532

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL LF +M    +K ++VT+ ++LSAC+    +  G K+   +     I   L   + 
Sbjct: 533 EEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYG-KEIHGIIIKGPIRADLFAESA 591

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           ++D+YG+ G L  A  +   MP       W +++ A   H
Sbjct: 592 LIDMYGKCGNLELALRVFEHMP-EKNEVSWNSIISAYGAH 630



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 223/503 (44%), Gaps = 48/503 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGL-----EKNPVLVPKLVTFYASFSLYNNACFL---VENS 135
           C     L  G ++HA A+  GL          L  +LV  Y     + +A  +   +  +
Sbjct: 46  CVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRA 105

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDF 193
                LPWN LI  +   G +  A+  Y +M       R D  T P V+K+C  +  +  
Sbjct: 106 AAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHL 165

Query: 194 GRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           GR+VH    A                                L+RD    + +I  YA  
Sbjct: 166 GRLVHRTTRALG------------------------------LDRDMYVGSALIKMYADA 195

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           GL   A ++F  M E     + + WN +  G ++ G+    + L   MR      +    
Sbjct: 196 GLLDGAREVFDGMDER----DCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATL 251

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L  C+    L  G ++H  AV+        V N L++MY++C+ L  A+ LF +   
Sbjct: 252 ACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPR 311

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
             ++TWN M+SG       +++  LF +M +SG++P+ VT+AS+LP    +   + GKE 
Sbjct: 312 DDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEI 371

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H YI+R     + + L ++LV++Y +   V  A++VFD     D V  +++I+GY +   
Sbjct: 372 HGYIVRNCAHVD-VFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRM 430

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK-QFERMTSIYGIFPQLEHF 552
              A+K+F  +    IKP+ V + + L AC+    +  GQ+     + + Y     +E  
Sbjct: 431 SEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVE-- 488

Query: 553 ACMVDLYGRAGLLNKAKEIITKM 575
           + ++D+Y + G L+ +  + +KM
Sbjct: 489 SALMDMYSKCGRLDLSHYMFSKM 511


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 217/675 (32%), Positives = 338/675 (50%), Gaps = 81/675 (12%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP-----KLVTFYASFSLYNNACFL 131
           FA   F   K   L+ G +      A+     P  +P     +L+    +   +N A  L
Sbjct: 61  FAKTSFPVLKRFELSNGAEFLLSTEAMVPPSLPTNIPSHLGLRLIRVALNVGDFNRARQL 120

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +N     P   + LIS     G   EA+ +Y  +Q R I+ D   + +  KAC    D 
Sbjct: 121 FDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDA 180

Query: 192 DFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
              + VH     C   S +FV NAL+  YGK   V+ ARR+FD ++ RD VSW ++ S Y
Sbjct: 181 LRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCY 240

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
              G  ++   +F EM   GV+ N +T ++I                             
Sbjct: 241 VKCGFPRKGMDVFREMGWSGVKPNPMTVSSI----------------------------- 271

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYILF 368
                 L AC+ +  LK GKEIHG AVR  +G   N  V +AL+++Y++C  +R A ++F
Sbjct: 272 ------LPACAELKDLKSGKEIHGFAVR--HGMVVNLFVCSALVSLYAKCLSVREARMVF 323

Query: 369 KMTAEKSIITWNSMLSGY--------------------THLDCA---------------E 393
            +   + +++WN +L+ Y                       D A               E
Sbjct: 324 DLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSE 383

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  +FR+M + G +PN +TI+SILP C+   NL+ GKE HCY+ R     + L    +L
Sbjct: 384 EAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGD-LTSTTAL 442

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MYA+ G +  +++VFD+M R+D V + ++I    + G G+ AL LF++M  ++++P+ 
Sbjct: 443 LYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNS 502

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VT   VLS CSHS LV EG + F  M   + + P   H++C+VD+Y RAG LN+A + I 
Sbjct: 503 VTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQ 562

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
            MP  PT++ W  LL AC++++N  + + +A+KL E  P N G YV + N+      W +
Sbjct: 563 GMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSE 622

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
            ++VR  M++ G+ K PGC+W+  GN    F+V D SN+++ +IY  L  L E MK AGY
Sbjct: 623 ASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGY 682

Query: 694 VVKEEFCSEEEIVEE 708
               ++  ++   EE
Sbjct: 683 KPDTDYVLQDIDQEE 697


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 213/648 (32%), Positives = 329/648 (50%), Gaps = 43/648 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +A + + R+       DV   +F  ++  CG +  L +G+++H   I  G E
Sbjct: 182 YAKAGLFDEALDLYHRMLWVGVKPDVY--TFPCVLRTCGGMPNLVRGREIHVHVIRYGFE 239

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +V  L+T Y      N A  + +    R  + WN +IS Y  +G   E L ++  M
Sbjct: 240 SDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMM 299

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               +  D  T  SV+ AC  + D   GR +H   +         +HN+L+ MY   G +
Sbjct: 300 IKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLI 359

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + A  +F +   RD VSW  MIS Y +  + ++A + +  M+ EG+              
Sbjct: 360 EEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGI-------------- 405

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                  D +   I L ACS +  L +G  +H  A +     Y 
Sbjct: 406 ---------------------MPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYS 444

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V N+LI MY++CK +  A  +F  T EK+I++W S++ G    +   E+ F FREM R 
Sbjct: 445 IVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR 504

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            ++PN VT+  +L  CAR+  L  GKE H + LR  +  +  +  N++++MY R G++  
Sbjct: 505 -LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMP-NAILDMYVRCGRMEY 562

Query: 466 AKSVFDLMSRRDEVT-YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           A   F   S   EVT +  L+ GY  +G+G  A +LF+ M ++ + P+ VT +++L ACS
Sbjct: 563 AWKQF--FSVDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACS 620

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
            SG+V EG + F  M   Y I P L+H+AC+VDL GR+G L +A E I KMP  P  A+W
Sbjct: 621 RSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVW 680

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LL +C+IH +  +GE AAE + +    + GYY+L++N+YA  G WDK+A+VR  MR  
Sbjct: 681 GALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQN 740

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAG 692
           G+   PGC+WV+       FL  D  + Q +EI  LL    + MK+AG
Sbjct: 741 GLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAG 788



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 155/565 (27%), Positives = 269/565 (47%), Gaps = 66/565 (11%)

Query: 32  NEHIMRINLLETLKDFAGRGNLSKA---FEAFTRIRITAASHDVVLDSFAHIIFCCGKVK 88
           N HI ++ LL         GNL +A    ++   +RI         D++  +I  C   +
Sbjct: 75  NSHIYQLCLL---------GNLDRAMSYLDSMHELRIPVED-----DAYVALIRLCEWKR 120

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           A  +G ++++         +  L   L++ +  F    +A ++      R    WN+L+ 
Sbjct: 121 ARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVG 180

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEW 207
            Y + G + EAL +Y +M    ++ D +T+P VL+ CG M ++  GR +H   I    E 
Sbjct: 181 GYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFES 240

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            + V NAL++MY K G V+ AR +FDKM  RD +SWN MIS Y   G+  E  +LF  M 
Sbjct: 241 DVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMI 300

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           +  V+ +++T  ++                                   + AC  +G  +
Sbjct: 301 KYPVDPDLMTMTSV-----------------------------------ITACELLGDDR 325

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
           LG++IHG  +R  +G   ++ N+LI MYS    +  A  +F  T  + +++W +M+SGY 
Sbjct: 326 LGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYE 385

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
           +    +++   ++ M   G+ P+ +TIA +L  C+ + NL  G   H  + ++     + 
Sbjct: 386 NCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLH-EVAKQKGLVSYS 444

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
           ++ NSL++MYA+   + +A  +F     ++ V++TS+I G  I      AL  F EM + 
Sbjct: 445 IVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR- 503

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQK----QFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           ++KP+ VT+V VLSAC+  G +  G++          S  G  P       ++D+Y R G
Sbjct: 504 RLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPN-----AILDMYVRCG 558

Query: 564 LLNKAKEIITKMPYTPTSAMWATLL 588
            +  A +    + +  TS  W  LL
Sbjct: 559 RMEYAWKQFFSVDHEVTS--WNILL 581


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 213/638 (33%), Positives = 341/638 (53%), Gaps = 49/638 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  CG    L  G+++H  A  LG + N  +   L+  Y+ F     A  L ++ 
Sbjct: 220 TFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM 276

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN +IS  +++G  A+AL V  +M+   I+ +  T  S+L  C ++ D+    
Sbjct: 277 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM 336

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ++H   I    E+ LFV NAL++MY KFG ++ AR+ F +M   D VSWN++I+AY    
Sbjct: 337 LIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQND 396

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A   FV+MQ  G + +++T                              L S+A++
Sbjct: 397 DPVTAHGFFVKMQLNGFQPDLLT------------------------------LVSLASI 426

Query: 315 IGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           +     +     K  + +HG  +R G   E   + NA++ MY++   L  A+ +F++   
Sbjct: 427 V-----AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPV 481

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKE 432
           K +I+WN++++GY     A E+  +++ M     + PN  T  SILP  A V  LQ G +
Sbjct: 482 KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMK 541

Query: 433 FHCYILRRAMFNEHL--LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
            H  +++    N HL   +   L+++Y + G++ +A S+F  + +   VT+ ++I+ +GI
Sbjct: 542 IHGRVIKT---NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI 598

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G     LKLF EM    +KPDHVT V++LSACSHSG V EG+  F R+   YGI P L+
Sbjct: 599 HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLK 657

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL GRAG L  A + I  MP  P +++W  LLGAC+IH N  +G++A+++L E 
Sbjct: 658 HYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEV 717

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
             +N GYYVL++N+YA  G W+ + KVR+  R+ G++K PG + ++       F   + S
Sbjct: 718 DSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQS 777

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           + + +EIY  L  LT  MK  GY+    F  ++  VEE
Sbjct: 778 HPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQD--VEE 813



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 145/509 (28%), Positives = 256/509 (50%), Gaps = 51/509 (10%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
            K LHA  +  G  ++  +  +LV  YA+    + +    +    +    WN +IS YV 
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 153 DGFYAEAL-CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
           +G + EA+ C Y+ +    IR D +T+P VLKACG ++D   GR +H        +W++F
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVF 251

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V  +L+ MY +FG   +AR LFD M  RD  SWN MIS     G   +A  +  EM+ EG
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           +++N +T  +I   C + G+                   S A +I      H+  +K G 
Sbjct: 312 IKMNFVTVVSILPVCPQLGDI------------------STAMLI------HLYVIKHGL 347

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           E               V NALI MY++  +L  A   F+      +++WNS+++ Y   D
Sbjct: 348 EFD-----------LFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQND 396

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
               +   F +M  +G +P+ +T+ S+  + A+  + ++ +  H +I+RR    E +++ 
Sbjct: 397 DPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG 456

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQI 509
           N++V+MYA+ G +  A  VF+++  +D +++ +LI GY   G    A+++++ M +  +I
Sbjct: 457 NAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 516

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERM--TSIYGIFPQLEHF--ACMVDLYGRAGLL 565
            P+  T V++L A +H G + +G K   R+  T+++     L+ F   C++D+YG+ G L
Sbjct: 517 IPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLH-----LDVFVATCLIDVYGKCGRL 571

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIH 594
             A  +  ++P   +S  W  ++    IH
Sbjct: 572 VDAMSLFYQVP-QESSVTWNAIISCHGIH 599


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 205/613 (33%), Positives = 317/613 (51%), Gaps = 78/613 (12%)

Query: 136 NIRYPLPW--NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           NI  P P   + LIS +   G   EA+ +Y  +++R I+  N  + +V KACG   D   
Sbjct: 91  NIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASR 150

Query: 194 GRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
            + VH     C   S  F+ NAL+  YGK   V+ ARR+FD ++ +D VSW +M S Y +
Sbjct: 151 VKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVN 210

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            GL +    +F EM   GV+ N +T ++I                               
Sbjct: 211 CGLPRLGLAVFCEMGWNGVKPNSVTLSSI------------------------------- 239

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKM 370
               L ACS +  LK G+ IHG AVR  +G  ENV   +AL+++Y+RC  ++ A ++F +
Sbjct: 240 ----LPACSELKDLKSGRAIHGFAVR--HGMIENVFVCSALVSLYARCLSVKQARLVFDL 293

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE---------------------- 408
              + +++WN +L+ Y      ++   LF +M   GVE                      
Sbjct: 294 MPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKA 353

Query: 409 -------------PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
                        PN +TI+S LP C+ + +L+ GKE HCY+ R  +  + L    +LV 
Sbjct: 354 VEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGD-LTTMTALVY 412

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+ G +  +++VFD++ R+D V + ++I    + G GR  L LFE M ++ IKP+ VT
Sbjct: 413 MYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVT 472

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
              VLS CSHS LV EG + F  M   + + P   H+ACMVD++ RAG L++A E I +M
Sbjct: 473 FTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRM 532

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P  PT++ W  LLGAC++++N  + + +A KL E  P N G YV + N+      W + +
Sbjct: 533 PMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEAS 592

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
           + R  M++ G+ K PGC+W+  G+    F+V D +N+++ +IY  L  L E MK AGY  
Sbjct: 593 EARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKP 652

Query: 696 KEEFCSEEEIVEE 708
             ++  ++   EE
Sbjct: 653 DTDYVLQDIDQEE 665



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 204/422 (48%), Gaps = 5/422 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITA-ASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           F  RG  ++A   +  +R      H+ V   F  +   CG     ++ K++H  AI  G+
Sbjct: 107 FTTRGLPNEAIRLYASLRARGIKPHNSV---FLTVAKACGASGDASRVKEVHDDAIRCGM 163

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             +  L   L+  Y        A  + ++  ++  + W  + S YV  G     L V+ +
Sbjct: 164 MSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCE 223

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           M    ++ ++ T  S+L AC E+ D+  GR +H   +      ++FV +ALVS+Y +   
Sbjct: 224 MGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLS 283

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           V  AR +FD M  RD VSWN +++AY +   + +   LF +M  +GVE +  TWN + GG
Sbjct: 284 VKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGG 343

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           C+  G  +  +E+L +M+      + +     L ACS + +L++GKE+H    R      
Sbjct: 344 CMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGD 403

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
                AL+ MY++C DL  +  +F M   K ++ WN+M+          E   LF  M +
Sbjct: 404 LTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQ 463

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           SG++PN VT   +L  C+    ++ G +    + R  +       +  +V++++R+G++ 
Sbjct: 464 SGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLH 523

Query: 465 EA 466
           EA
Sbjct: 524 EA 525



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 155/320 (48%), Gaps = 36/320 (11%)

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G    A++LFD + + D  + +T+ISA+ ++GL  EA +L+  ++  G++ +   + T+A
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
             C  +G+   V                                   KE+H  A+R    
Sbjct: 140 KACGASGDASRV-----------------------------------KEVHDDAIRCGMM 164

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               + NALI  Y +CK +  A  +F     K +++W SM S Y +         +F EM
Sbjct: 165 SDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEM 224

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             +GV+PN VT++SILP C+ + +L+ G+  H + +R  M  E++ + ++LV +YAR   
Sbjct: 225 GWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMI-ENVFVCSALVSLYARCLS 283

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           V +A+ VFDLM  RD V++  ++  Y    E    L LF +M+   ++ D  T  AV+  
Sbjct: 284 VKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGG 343

Query: 523 CSHSGLVVEGQKQFERMTSI 542
           C  +G   +  +   +M ++
Sbjct: 344 CMENGQTEKAVEMLRKMQNL 363



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 3/231 (1%)

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
           D R A  LF    +    T ++++S +T      E+  L+  +   G++P+     ++  
Sbjct: 81  DFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAK 140

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
            C    +    KE H   +R  M ++   L N+L+  Y +   V  A+ VFD +  +D V
Sbjct: 141 ACGASGDASRVKEVHDDAIRCGMMSD-AFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           ++TS+ + Y   G  R+ L +F EM  N +KP+ VT+ ++L ACS    +  G +     
Sbjct: 200 SWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSG-RAIHGF 258

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
              +G+   +   + +V LY R   + +A+ +   MP+    + W  +L A
Sbjct: 259 AVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVS-WNGVLTA 308


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 212/603 (35%), Positives = 313/603 (51%), Gaps = 39/603 (6%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G  LHA A+  G + N  +   LV  Y  FS    A  + +    R  + WN +I+  VR
Sbjct: 122 GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVR 181

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFV 211
           +  Y +++ V+K M ++ +R D+ T  +VL A  EM +V  G  +    +     +  +V
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
              L+S++ K   VD AR LF  + + D VS+N +IS ++  G  + A + F E+   G 
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSHVGALKLGK 330
            V                                    S +T++GL    S  G L L  
Sbjct: 302 RV------------------------------------SSSTMVGLIPVSSPFGHLHLAC 325

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
            I G  V+       +V  AL T+YSR  ++  A  LF  ++EK++  WN+M+SGY    
Sbjct: 326 CIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSG 385

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             E +  LF+EM  +   PN VTI SIL  CA++  L  GK  H  +++     +++ + 
Sbjct: 386 LTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVH-QLIKSKNLEQNIYVS 444

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            +L++MYA+ G + EA  +FDL S ++ VT+ ++I GYG+ G G  ALKLF EM     +
Sbjct: 445 TALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQ 504

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           P  VT ++VL ACSH+GLV EG + F  M + Y I P  EH+ACMVD+ GRAG L KA E
Sbjct: 505 PSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALE 564

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
            I KMP  P  A+W TLLGAC IH++T +   A+E+L E  P N GYYVL++N+Y+    
Sbjct: 565 FIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERN 624

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           + K A VR  ++   + K PGC  ++       F+  D S+ Q   IY  L  LT  M++
Sbjct: 625 FPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMRE 684

Query: 691 AGY 693
            GY
Sbjct: 685 MGY 687



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/471 (23%), Positives = 219/471 (46%), Gaps = 53/471 (11%)

Query: 140 PLPWNLLISLYVRDGFY----AEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           P P   L ++ ++ GF     A ++  Y  + ++  +  DNFTY   + A     D + G
Sbjct: 67  PKPDIFLFNVLIK-GFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASP---DDNLG 122

Query: 195 RVVHS--CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
             +H+   +D   + +LFV +ALV +Y KF +V  AR++FDKM +RD V           
Sbjct: 123 MCLHAHAVVDG-FDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTV----------- 170

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                                    WNT+  G +R   +   +++   M  Q   LDS  
Sbjct: 171 ------------------------LWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTT 206

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               L A + +  +K+G  I   A++  +   + V   LI+++S+C+D+  A +LF M  
Sbjct: 207 VATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIR 266

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +  ++++N+++SG++     E +   FRE+  SG   +  T+  ++P+ +   +L     
Sbjct: 267 KPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACC 326

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
              + ++     +   +  +L  +Y+R  ++  A+ +FD  S +    + ++I+GY   G
Sbjct: 327 IQGFCVKSGTILQP-SVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSG 385

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
              +A+ LF+EM   +  P+ VT+ ++LSAC+  G +  G K   ++     +   +   
Sbjct: 386 LTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFG-KSVHQLIKSKNLEQNIYVS 444

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
             ++D+Y + G +++A ++   +     +  W T++    +H   G G+ A
Sbjct: 445 TALIDMYAKCGNISEASQLF-DLTSEKNTVTWNTMIFGYGLH---GYGDEA 491


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  348 bits (894), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 218/702 (31%), Positives = 359/702 (51%), Gaps = 80/702 (11%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIA----LGLEKNPVLVPKLVTFYASFSLYNNACF 130
           D F  ++  C   +A  +G ++++ A++    LG+E    L    +  +  F    +A +
Sbjct: 95  DVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVE----LGNAFLAMFVRFGNLVDAWY 150

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMM 189
           +    + R    WN+L+  Y + G++ EA+C+Y +M     ++ D +T+P VL+ CG + 
Sbjct: 151 VFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIP 210

Query: 190 DVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           D+  G+ VH   +   +E  + V NAL++MY K G V  AR LFD+M  RD +SWN MIS
Sbjct: 211 DLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC----------------------- 285
            Y   G+  E  +LF  M+   V+ +++T  ++   C                       
Sbjct: 271 GYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330

Query: 286 ------------LRTGNFKGVLELLSRMRTQE----------------------TYL--- 308
                       L  G+++   +L SRM  ++                      TY    
Sbjct: 331 DISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMD 390

Query: 309 ------DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLR 362
                 D +     L AC+ +G L  G E+H  A++     Y  V N LI MYS+CK + 
Sbjct: 391 QDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCID 450

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
            A  +F     K++I+W S+++G    +   E+    R+M +  ++PN +T+ + L  CA
Sbjct: 451 KALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQM-KMTLQPNAITLTAALAACA 509

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
           R+  L  GKE H ++LR  +  +  L  N+L++MY R G++  A S F+   ++D  ++ 
Sbjct: 510 RIGALMCGKEIHAHVLRTGVGLDDFLP-NALLDMYVRCGRMNTAWSQFN-SQKKDVTSWN 567

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
            L+ GY  +G+G + ++LF+ M K++++PD +T +++L  CS S +V +G   F +M   
Sbjct: 568 ILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMED- 626

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602
           YG+ P L+H+AC+VDL GRAG L +A + I KMP TP  A+W  LL AC+IH    +GE 
Sbjct: 627 YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGEL 686

Query: 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFS 662
           +A+ + E   ++ GYY+L+ N+YA  G W ++AKVR  M++ G+    GC+WV+      
Sbjct: 687 SAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVH 746

Query: 663 PFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
            FL DD  + Q +EI  +L G  E M + G     E  S +E
Sbjct: 747 AFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDE 788



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 150/312 (48%), Gaps = 12/312 (3%)

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G    G  +  ++LL+ M+     +D    V  +  C    A + G +++  A+      
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSL 127

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF-REM 402
              + NA + M+ R  +L  A+ +F   +E+++ +WN ++ GY      +E+  L+ R +
Sbjct: 128 GVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRML 187

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
           +  GV+P+  T   +L  C  + +L  GKE H +++R   +   + + N+L+ MY + G 
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYG-YELDIDVVNALITMYVKCGD 246

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           V  A+ +FD M RRD +++ ++I+GY   G     L+LF  M    + PD +T+ +V+SA
Sbjct: 247 VKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISA 306

Query: 523 CSHSGLVVEGQKQFERMTSIY----GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           C      + G ++  R    Y    G    +     +  +Y  AG   +A+++ ++M   
Sbjct: 307 CE-----LLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERK 361

Query: 579 PTSAMWATLLGA 590
              + W T++  
Sbjct: 362 DIVS-WTTMISG 372



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 188/474 (39%), Gaps = 75/474 (15%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   +  E F  +R  +   D++  +   +I  C  +     G+ +HA  I  G   +  
Sbjct: 276 GMCHEGLELFFAMRGLSVDPDLM--TLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS 333

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L   Y +   +  A  L      +  + W  +IS Y  +    +A+  Y+ M    
Sbjct: 334 VCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDS 393

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           ++ D  T  +VL AC  + D+D G  +H   I A     + V N L++MY K   +D A 
Sbjct: 394 VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKAL 453

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +F  +  ++ +SW ++I+         EA  +F+   +  ++ N IT       C R  
Sbjct: 454 DIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALAACAR-- 510

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                                            +GAL  GKEIH   +R   G  + + N
Sbjct: 511 ---------------------------------IGALMCGKEIHAHVLRTGVGLDDFLPN 537

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ MY RC  +  A+  F  + +K + +WN +L+GY+          LF  M +S V P
Sbjct: 538 ALLDMYVRCGRMNTAWSQFN-SQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRP 596

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + +T  S+L  C++   ++ G                 L++ S +E Y  +  +     V
Sbjct: 597 DEITFISLLCGCSKSQMVRQG-----------------LMYFSKMEDYGVTPNLKHYACV 639

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            DL+ R                GE + A K  ++M    + PD     A+L+AC
Sbjct: 640 VDLLGR---------------AGELQEAHKFIQKM---PVTPDPAVWGALLNAC 675


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 193/619 (31%), Positives = 337/619 (54%), Gaps = 42/619 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  +   CG +     GK +H C I  GL  + V+   LV  Y   + +  A +L    
Sbjct: 108 TYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEM 167

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +    WN +IS Y + G + +AL  +  M+      ++ T  + + +C  ++D++ G 
Sbjct: 168 PEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGM 227

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   I++      F+ +ALV MYGK G +++A  +F++M ++                
Sbjct: 228 EIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKK---------------- 271

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ--ETYLDSVA 312
                               V+ WN++  G    G+    ++L  RM  +  +  L +++
Sbjct: 272 -------------------TVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLS 312

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
           ++I +  CS    L  GK +HG  +R        V ++L+ +Y +C  +  A  +FK+  
Sbjct: 313 SLIMV--CSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIP 370

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +  +++WN M+SGY       E+  LF EM +S VE + +T  S+L  C+++A L+ GKE
Sbjct: 371 KSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKE 430

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  I+ + + N  +++  +L++MYA+ G V EA SVF  + +RD V++TS+I  YG  G
Sbjct: 431 IHNLIIEKKLDNNEVVM-GALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHG 489

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               AL+LF EM ++ +KPD V  +A+LSAC H+GLV EG   F +M ++YGI P++EH+
Sbjct: 490 HAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHY 549

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +C++DL GRAG L++A EI+ + P       + +TL  AC++HRN  +G   A  L++  
Sbjct: 550 SCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKD 609

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P++S  Y+L++NMYA+   WD++  VR+ M++LG++K PGC+W++      PF V+D S+
Sbjct: 610 PDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSH 669

Query: 672 VQAQEIYPLLGGLTELMKD 690
           +  + ++  L  L++ M+D
Sbjct: 670 LHLELVFKCLSYLSDHMED 688



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 153/548 (27%), Positives = 270/548 (49%), Gaps = 51/548 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP- 142
           C   K+L QGK +H   + LGL+ +  L   L+  Y S  LY++A  + +N      +  
Sbjct: 13  CMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISL 72

Query: 143 WNLLISLYVRDGFYAEALCVY-KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC- 200
           WN L++ Y ++  Y EAL ++ K +    ++ D++TYPSV KACG +     G+++H+C 
Sbjct: 73  WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCL 132

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           I       + V ++LV MYGK    +                          K +W    
Sbjct: 133 IKTGLMMDIVVGSSLVGMYGKCNAFE--------------------------KAIW---- 162

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            LF EM E+    +V  WNT+     ++GNFK  LE    MR      +SV     + +C
Sbjct: 163 -LFNEMPEK----DVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSC 217

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           + +  L  G EIH   +   +     + +AL+ MY +C  L  A  +F+   +K+++ WN
Sbjct: 218 ARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWN 277

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           SM+SGY           LF+ M+  GV+P   T++S++ +C+R A L  GK  H Y +R 
Sbjct: 278 SMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRN 337

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            +    + + +SL+++Y + GKV  A+ +F L+ +   V++  +I+GY  +G+   AL L
Sbjct: 338 RI-QPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGL 396

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH----FACMV 556
           F EM K+ ++ D +T  +VL+ACS    + +G++    +     I  +L++       ++
Sbjct: 397 FSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLI-----IEKKLDNNEVVMGALL 451

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT-GIGEWAAEKLLE-TRPEN 614
           D+Y + G +++A  +   +P     + W +++ A   H +  G  E  AE L    +P+ 
Sbjct: 452 DMYAKCGAVDEAFSVFKCLPKRDLVS-WTSMITAYGSHGHAYGALELFAEMLQSNVKPDR 510

Query: 615 SGYYVLIA 622
             +  +++
Sbjct: 511 VAFLAILS 518



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 9/244 (3%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           +G++    + F R+          L + + +I  C +   L +GK +H   I   ++ + 
Sbjct: 286 KGDIISCIQLFKRMYNEGVKP--TLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDV 343

Query: 110 VLVPKLVTFY---ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +   L+  Y       L      L+  S +   + WN++IS YV +G   EAL ++ +M
Sbjct: 344 FVNSSLMDLYFKCGKVELAEKIFKLIPKSKV---VSWNVMISGYVAEGKLFEALGLFSEM 400

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           +   +  D  T+ SVL AC ++  ++ G+ +H+  I+   + +  V  AL+ MY K G V
Sbjct: 401 RKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAV 460

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D A  +F  + +RD VSW +MI+AY S G    A +LF EM +  V+ + + +  I   C
Sbjct: 461 DEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSAC 520

Query: 286 LRTG 289
              G
Sbjct: 521 GHAG 524


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 307/565 (54%), Gaps = 16/565 (2%)

Query: 146 LISLYVRDGFYAEA---LCVYK------QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           L+    +D  + EA   LC  K      Q+     R    TY ++L+ C ++  +D G  
Sbjct: 51  LVKRLCKDNNFKEAIDILCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMK 110

Query: 197 VHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           VH+          + + N ++ MY K   +  A+RLFD+M ERD  SWN MIS YA  G 
Sbjct: 111 VHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGR 170

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATV 314
            +EA +LF +M E     +  +W  +  G +R    +  LEL   M+  E +  +     
Sbjct: 171 LQEARKLFDQMTER----DNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMS 226

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L A + + +L LGKEIHG  +R        V +AL  MY +C  +  A  +F  T ++
Sbjct: 227 SALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDR 286

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +++W +M+  Y      EE   LF ++ +SG+ PN  T + +L  CA  A  + GK+ H
Sbjct: 287 DVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVH 346

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            Y+ R   F+      ++LV MY + G +  A+ VF+ M R D V++TSLI+GY   G+ 
Sbjct: 347 GYMTRIG-FDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQP 405

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL+ FE + K+  +PDH+T V VLSAC+H+GLV +G + F+ +   +G+    +H+AC
Sbjct: 406 DEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYAC 465

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           ++DL  R+G L +A++II KMP  P   +WA+LLG C+IH N  + + AAE L E  PEN
Sbjct: 466 LIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPEN 525

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
              Y  +AN+YA  G W  +A+VR  M   GV K PG +W++       FLV DTS+ ++
Sbjct: 526 PATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKS 585

Query: 675 QEIYPLLGGLTELMKDAGYVVKEEF 699
           +EI+  LG L++ MK+ GYV    F
Sbjct: 586 KEIHEFLGKLSKRMKEEGYVPDTNF 610



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 134/559 (23%), Positives = 235/559 (42%), Gaps = 83/559 (14%)

Query: 4   SSSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAF--- 60
           S  R I +  + SQ     P+  K PI+N         E +K      N  +A +     
Sbjct: 17  SPRRAICSSSTTSQ-----PQLSKPPIHNTFFKSGAKDELVKRLCKDNNFKEAIDILCEQ 71

Query: 61  TRIRITAASHDVV----LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
            R+R      D V      +++ ++  C +++AL +G ++HA     G     V+  +++
Sbjct: 72  KRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRIL 131

Query: 117 TFYASFSLYNNACFLVENSNIRYPLPWNLLI----------------------------- 147
             Y   +   NA  L +    R    WN++I                             
Sbjct: 132 DMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTA 191

Query: 148 --SLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DA 203
             S YVR   + EAL +++ MQ     + + FT  S L A   +  +  G+ +H  I   
Sbjct: 192 MTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRI 251

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             +    V +AL  MYGK G +  AR +FDK ++RD VSW  MI  Y  +G  +E F LF
Sbjct: 252 GLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALF 311

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            ++ + G+  N  T             F GV                      L AC+  
Sbjct: 312 SDLLKSGIWPNEFT-------------FSGV----------------------LNACADH 336

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
            A +LGK++HG   R  +       + L+ MY++C ++++A  +F       +++W S++
Sbjct: 337 AAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLI 396

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           SGY      +E+   F  + +SG +P+++T   +L  C     +  G E+   I  +   
Sbjct: 397 SGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGL 456

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFE 502
                 +  L+++ +RSG++ EA+ + D M    D+  + SL+ G  I G  ++A +  E
Sbjct: 457 THTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAE 516

Query: 503 EMNKNQIKPDHVTMVAVLS 521
            +   +I+P++      L+
Sbjct: 517 AL--FEIEPENPATYTTLA 533



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 142/340 (41%), Gaps = 48/340 (14%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           +++L  GK++H   + +GL+ + V+   L   Y        A  + + +  R  + W  +
Sbjct: 235 IQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAM 294

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-H 205
           I  Y ++G   E   ++  +    I  + FT+  VL AC +    + G+ VH  +     
Sbjct: 295 IDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGF 354

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           + S F  + LV MY K G +  ARR+F+ M   D VSW ++IS YA  G   EA Q F  
Sbjct: 355 DPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFEL 414

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           + + G + + IT+  +   C   G     LE          Y DS+    GL        
Sbjct: 415 LLKSGTQPDHITFVGVLSACTHAGLVDKGLE----------YFDSIKEKHGL-------- 456

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY-ILFKMTAEKSIITWNSMLS 384
                  H +    C          LI + SR   L+ A  I+ KM  E     W S+L 
Sbjct: 457 ------THTADHYAC----------LIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLG 500

Query: 385 G---YTHLDCAEESAFLFREMFRSGVEP----NYVTIASI 417
           G   + +L  A+ +A    E     +EP     Y T+A+I
Sbjct: 501 GCRIHGNLKLAKRAAEALFE-----IEPENPATYTTLANI 535


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 208/670 (31%), Positives = 333/670 (49%), Gaps = 76/670 (11%)

Query: 68  ASHDVVLD-------SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA 120
           A H +V D        FA ++  C + ++    + +HA  +         +  +L+  Y 
Sbjct: 2   AKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYG 61

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL-----------CVYKQMQSR 169
                ++A  L +    R    WN LIS+  + GF  EA            C +  M S 
Sbjct: 62  KCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSG 121

Query: 170 RIRGDNF--------------------TYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWS 208
             + D F                    ++ S L AC  +MD++ G  VH+ +    +   
Sbjct: 122 FAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTD 181

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +++ +AL+ MY K G V  A  +F  M+ER+ V+WN++I+ Y   G   EA ++FV M +
Sbjct: 182 VYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD 241

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV----ATVIGLGACSHVG 324
            G+E + +T  ++   C      K  L++ +R+     + D +    A V     CS V 
Sbjct: 242 SGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVN 301

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
             +  +     ++R    E      ++++ Y+R   ++ A  +F    ++++++WN++++
Sbjct: 302 EAR--RVFDRMSIRNVVSE-----TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIA 354

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GYT     EE+  LFR + R  + P + T  ++L                          
Sbjct: 355 GYTQNGENEEALRLFRLLKRESIWPTHYTFGNLL-------------------------K 389

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             + + NSL++MY + G + +   VF+ M  RD V++ ++I GY   G G  AL++F +M
Sbjct: 390 SDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM 449

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
                KPDHVTM+ VL ACSH+GLV EG+  F  M   +G+ P  +H+ CMVDL GRAG 
Sbjct: 450 LVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGC 508

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           LN+AK +I  MP  P + +W +LL AC++H N  +G+ AAEKLLE  P NSG YVL++NM
Sbjct: 509 LNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNM 568

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA  G W  + +VR  MR  GV K PGC+W++  +    FLV D S+   ++IY +L  L
Sbjct: 569 YAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKML 628

Query: 685 TELMKDAGYV 694
           TE MK  GY+
Sbjct: 629 TEQMKRVGYI 638



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 206/453 (45%), Gaps = 42/453 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
           FA      ++ E F ++       D +L+  SF   +  C  +  L  G Q+HA      
Sbjct: 122 FAQHDRFEESLEYFVKMH----REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSR 177

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   L+  Y+       A  +      R  + WN LI+ Y ++G  +EAL V+ 
Sbjct: 178 YSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFV 237

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M    +  D  T  SV+ AC  +  +  G  +H+ +   +++   L + NALV MY K 
Sbjct: 238 RMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKC 297

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            +V+ ARR+FD+M  R+ VS  +M+S YA     K A  +F +M +     NV++WN + 
Sbjct: 298 SKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQR----NVVSWNALI 353

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G  + G  +  L L  R+  +E+   +  T   L          L  +I          
Sbjct: 354 AGYTQNGENEEALRLF-RLLKRESIWPTHYTFGNL----------LKSDIF--------- 393

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V N+LI MY +C  +     +F+   E+  ++WN+++ GY       E+  +FR+M
Sbjct: 394 ----VGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM 449

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM--FNEHLLLWNSLVEMYARS 460
              G +P++VT+  +L  C+    ++ G+ +   +    +    +H   +  +V++  R+
Sbjct: 450 LVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDH---YTCMVDLLGRA 506

Query: 461 GKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQG 492
           G + EAK++ + M    D V + SL+A   + G
Sbjct: 507 GCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 539


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  348 bits (893), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 322/602 (53%), Gaps = 43/602 (7%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV  Y+     N+A  L+  +  R  + W  LI+  V++G +  AL  +  M+   I+ +
Sbjct: 48  LVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPN 107

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           +FT+P   KA G +     G+ VH+  + A     +FV  +   MY K G  + AR++FD
Sbjct: 108 DFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFD 167

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           +M ER+  +WN  +S    +G + +A   F+E + EG E N+IT+               
Sbjct: 168 EMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAF------------ 215

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                                  L AC+    L+LG+++HG  ++  +    +V N LI 
Sbjct: 216 -----------------------LNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLID 252

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
            Y +C  +  + I+F   ++ + ++W SM+  Y   D  E++  +F    + G+EP    
Sbjct: 253 FYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFM 312

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           ++S+L  CA ++ L+ GK  H   ++  +   ++ + ++LV+MY + G + +A+  FD M
Sbjct: 313 VSSVLSACAGLSVLEVGKSVHTLAVKACVVG-NIFVGSALVDMYGKCGSIEDAERAFDEM 371

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN--KNQIKPDHVTMVAVLSACSHSGLVVE 531
             R+ VT+ ++I GY  QG+  +A+ LF+EM    +++ P++VT V VLSACS +G V  
Sbjct: 372 PERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNV 431

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G + FE M   YGI P  EH+AC+VDL GRAG++ +A + I KMP  PT ++W  LLGA 
Sbjct: 432 GMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGAS 491

Query: 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
           ++   + +G+ AA+ L E  P +SG +VL++NM+AA G W++   VR  M+D+G++K  G
Sbjct: 492 KMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAG 551

Query: 652 CAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC----SEEEIVE 707
           C+W+ AGN    F   DTS+ +  EI  +L  L   M+ AGY+    F      EEE   
Sbjct: 552 CSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAM 611

Query: 708 EI 709
           E+
Sbjct: 612 EV 613



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 182/426 (42%), Gaps = 43/426 (10%)

Query: 85  GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWN 144
           G +++   GKQ+HA A+  G   +  +       Y+   L   A  + +    R    WN
Sbjct: 119 GSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWN 178

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
             +S  V +G Y +AL  + + +      +  T+ + L AC     +  GR +H   + +
Sbjct: 179 AYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQS 238

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             E  + V N L+  YGK  QV  +  +F  + + + VSW +MI +Y      ++A  +F
Sbjct: 239 GFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVF 298

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           +  ++EG+E      +++                                   L AC+ +
Sbjct: 299 LRARKEGIEPTDFMVSSV-----------------------------------LSACAGL 323

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L++GK +H  AV+ C      V +AL+ MY +C  +  A   F    E++++TWN+M+
Sbjct: 324 SVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMI 383

Query: 384 SGYTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
            GY H   A+ +  LF EM      V PNYVT   +L  C+R  ++  G E    +  R 
Sbjct: 384 GGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRY 443

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG----YGIQGEGRVA 497
                   +  +V++  R+G V +A      M  R  V+    + G    +G    G+VA
Sbjct: 444 GIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVA 503

Query: 498 L-KLFE 502
              LFE
Sbjct: 504 ADNLFE 509



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 171/401 (42%), Gaps = 42/401 (10%)

Query: 193 FGRVVHSCIDACHEWSL--FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
            GR  H+ I    +  L  F++N LV+MY K  + + A+ L      R  V+W  +I+  
Sbjct: 24  LGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGS 83

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
              G +  A   F  M+ + ++ N  T+            FK    L S +         
Sbjct: 84  VQNGRFTSALFHFSNMRRDSIQPNDFTFPCA---------FKASGSLRSPL--------- 125

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                            +GK++H  AV+        V  +   MYS+      A  +F  
Sbjct: 126 -----------------VGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDE 168

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             E++I TWN+ LS        +++   F E    G EPN +T  + L  CA  + L+ G
Sbjct: 169 MPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLG 228

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           ++ H ++L+   F   + + N L++ Y +  +V  ++ +F  +S+ ++V++ S+I  Y  
Sbjct: 229 RQLHGFVLQSG-FEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQ 287

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL-VVEGQKQFERMTSIYGIFPQL 549
             E   A  +F    K  I+P    + +VLSAC  +GL V+E  K    +     +   +
Sbjct: 288 NDEEEKACLVFLRARKEGIEPTDFMVSSVLSAC--AGLSVLEVGKSVHTLAVKACVVGNI 345

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
              + +VD+YG+ G +  A+    +MP       W  ++G 
Sbjct: 346 FVGSALVDMYGKCGSIEDAERAFDEMPER-NLVTWNAMIGG 385



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 120/257 (46%), Gaps = 9/257 (3%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G    A  AF   R      +++  +F   +  C     L  G+QLH   +  G E +  
Sbjct: 188 GRYDDALTAFIEFRHEGWEPNLI--TFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVS 245

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQS 168
           +   L+ FY     +   C  +  S I  P  + W  +I  YV++    +A  V+ + + 
Sbjct: 246 VANGLIDFYG--KCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARK 303

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
             I   +F   SVL AC  +  ++ G+ VH+  + AC   ++FV +ALV MYGK G ++ 
Sbjct: 304 EGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIED 363

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ--EEGVEVNVITWNTIAGGC 285
           A R FD+M ER+ V+WN MI  YA +G    A  LF EM      V  N +T+  +   C
Sbjct: 364 AERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSAC 423

Query: 286 LRTGNFKGVLELLSRMR 302
            R G+    +E+   MR
Sbjct: 424 SRAGSVNVGMEIFESMR 440



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 116/263 (44%), Gaps = 4/263 (1%)

Query: 327 KLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           +LG+  H   ++       + + N L+ MYS+      A +L  +T  +S++TW ++++G
Sbjct: 23  RLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAG 82

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
                    + F F  M R  ++PN  T          + +   GK+ H   ++    ++
Sbjct: 83  SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISD 142

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
            + +  S  +MY+++G   EA+ +FD M  R+  T+ + ++   ++G    AL  F E  
Sbjct: 143 -VFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFR 201

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
               +P+ +T  A L+AC+ +  +  G +Q        G    +     ++D YG+   +
Sbjct: 202 HEGWEPNLITFCAFLNACAGASYLRLG-RQLHGFVLQSGFEADVSVANGLIDFYGKCHQV 260

Query: 566 NKAKEIITKMPYTPTSAMWATLL 588
               EII      P    W +++
Sbjct: 261 G-CSEIIFSGISKPNDVSWCSMI 282


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 201/619 (32%), Positives = 322/619 (52%), Gaps = 37/619 (5%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+ ++  C   + +  G+Q+HA  + +G EK+      LV  Y      + A  + E   
Sbjct: 112 FSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP 171

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
               + WN LIS  V +G    A+ +  QM+S  +  + F   S+LKAC      D GR 
Sbjct: 172 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ 231

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H   I A  +   ++   LV MY K   +D A ++FD M  RD + WN +IS  +  G 
Sbjct: 232 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGR 291

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EAF +F  +++EG+ VN  T   +                          L S A++ 
Sbjct: 292 HDEAFSIFYGLRKEGLGVNRTTLAAV--------------------------LKSTASLE 325

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
              A          +++H  A +  +    +V N LI  Y +C  L  A  +F+  +   
Sbjct: 326 AASAT---------RQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGD 376

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           II   SM++  +  D  E +  LF EM R G+EP+   ++S+L  CA ++  + GK+ H 
Sbjct: 377 IIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA 436

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           ++++R  F       N+LV  YA+ G + +A+  F  +  R  V+++++I G    G G+
Sbjct: 437 HLIKR-QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 495

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL+LF  M    I P+H+TM +VL AC+H+GLV E ++ F  M  ++GI    EH++CM
Sbjct: 496 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 555

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           +DL GRAG L+ A E++  MP+   +++W  LLGA ++H++  +G+ AAEKL    PE S
Sbjct: 556 IDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKS 615

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G +VL+AN YA++G W+++AKVR  M+D  ++K P  +WV+  +    F+V D S+   +
Sbjct: 616 GTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTK 675

Query: 676 EIYPLLGGLTELMKDAGYV 694
           EIY  L  L +LM  AGY+
Sbjct: 676 EIYSKLDELGDLMSKAGYI 694



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 235/505 (46%), Gaps = 42/505 (8%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-ENSNIRYPLPWNLLISLYV 151
           G Q+HA A+A G   +  +   LV  Y  F   ++A  +  E  + R  + WN L+S YV
Sbjct: 26  GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 85

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
           ++    +A+ V+ +M    I+   F +  V+ AC    ++D GR VH+  +   +E  +F
Sbjct: 86  KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVF 145

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
             NALV MY K G+VD+A  +F+KM + D VSWN +IS     G    A +L ++M+  G
Sbjct: 146 TANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSG 205

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           +  NV   ++I                                   L AC+  GA  LG+
Sbjct: 206 LVPNVFMLSSI-----------------------------------LKACAGAGAFDLGR 230

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           +IHG  ++      + +   L+ MY++   L  A  +F   + + +I WN+++SG +H  
Sbjct: 231 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGG 290

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA-MFNEHLLL 449
             +E+  +F  + + G+  N  T+A++L   A +      ++ H    +   +F+ H++ 
Sbjct: 291 RHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV- 349

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N L++ Y +   + +A  VF+  S  D +  TS+I        G  A+KLF EM +  +
Sbjct: 350 -NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGL 408

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +PD   + ++L+AC+      +G++    +     +       A +V  Y + G +  A+
Sbjct: 409 EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAKCGSIEDAE 467

Query: 570 EIITKMPYTPTSAMWATLLGACQIH 594
              + +P     + W+ ++G    H
Sbjct: 468 LAFSSLPERGVVS-WSAMIGGLAQH 491



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 16/273 (5%)

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSG 385
           +LG ++H  A+   +G    V NAL+ MY     +  A  +F +  +E++ ++WN ++S 
Sbjct: 24  QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 83

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           Y   D   ++  +F EM  SG++P     + ++  C    N+  G++ H  ++R   + +
Sbjct: 84  YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMG-YEK 142

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
            +   N+LV+MY + G+V  A  +F+ M   D V++ +LI+G  + G    A++L  +M 
Sbjct: 143 DVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK 202

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLY 559
            + + P+   + ++L AC+ +G        F+    I+G   +    +       +VD+Y
Sbjct: 203 SSGLVPNVFMLSSILKACAGAG-------AFDLGRQIHGFMIKANADSDDYIGVGLVDMY 255

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            +   L+ A ++   M +     +W  L+  C 
Sbjct: 256 AKNHFLDDAMKVFDWMSHRDL-ILWNALISGCS 287


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 201/660 (30%), Positives = 344/660 (52%), Gaps = 45/660 (6%)

Query: 44  LKDFAGRGNLSKAFEAF-TRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           L  +A RG+++   + F + + +    ++  L +   ++  C   K L QG+ +H+  I 
Sbjct: 286 LNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTT---VLKGCANSKNLKQGQVIHSLIIK 342

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISLYVRDGFYAEAL 160
            G E N  +   LV  Y+   L  +A  + +   I+ P  + W+ LI+   + G   E++
Sbjct: 343 CGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKT--IKKPDIVVWSALITCLDQQGQSEESI 400

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMY 219
            ++  M+      + +T  S+L A     ++ +G+ +H+C+     E  + V NALV+MY
Sbjct: 401 KLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMY 460

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G V    +L++ M++RD +SWN  +S     G++     +F  M EEG   N+ T+ 
Sbjct: 461 MKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFI 520

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           +I                                   LG+CS +  +  G+++H   ++ 
Sbjct: 521 SI-----------------------------------LGSCSCLFDVHYGRQVHAHIIKN 545

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
              +   V  ALI MY++C  L  A + F   + + + TW  +++ Y   +  E++   F
Sbjct: 546 QLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYF 605

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R+M + GV+PN  T+A  L  C+ +A+L+ G++ H  + +    ++ + + ++LV+MYA+
Sbjct: 606 RQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSD-MFVGSALVDMYAK 664

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G + EA+++F+ + RRD + + ++I GY   G+G  AL  F  M    I PD VT   +
Sbjct: 665 CGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGI 724

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           LSACSH GLV EG++ F  M   +GI P ++H ACMVD+ GR G  ++ ++ I KM  + 
Sbjct: 725 LSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQ 784

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
            + +W T+LGA ++H N  +GE AA KL E +PE    Y+L++N++A  G WD + +VR+
Sbjct: 785 NALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRS 844

Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            M   GV+K PGC+WV+A      F+  D S+ Q QEI+  L  L   +    YV K E+
Sbjct: 845 LMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEY 904



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 221/497 (44%), Gaps = 46/497 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C   ++L   K +H   +   +  +  L   LV  YA       A  ++     R  + W
Sbjct: 122 CASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSW 181

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
             LI   V +GF  +++ ++++MQ+  I  + FT  + LKAC   M +D G+ +H+    
Sbjct: 182 TALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFK 241

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                 LFV +ALV +Y K G++++A ++F  M E++ V+WN +++ YA +G      +L
Sbjct: 242 LGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKL 301

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M E  V+ N  T  T+  GC  + N                                
Sbjct: 302 FCSMMELDVKCNEFTLTTVLKGCANSKN-------------------------------- 329

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
              LK G+ IH   ++  Y   E +   L+ MYS+C     A  +FK   +  I+ W+++
Sbjct: 330 ---LKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSAL 386

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++       +EES  LF  M      PN  TI S+L       NLQ+G+  H  + +   
Sbjct: 387 ITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG- 445

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F   + + N+LV MY ++G V +   +++ M  RD +++ + ++G    G     L +F 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE--HFAC--MVDL 558
            M +    P+  T +++L +CS    V      + R    + I  QL+  +F C  ++D+
Sbjct: 506 HMLEEGFIPNMYTFISILGSCSCLFDV-----HYGRQVHAHIIKNQLDDNNFVCTALIDM 560

Query: 559 YGRAGLLNKAKEIITKM 575
           Y +   L  A     ++
Sbjct: 561 YAKCMYLEDADVAFNRL 577



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 139/273 (50%), Gaps = 5/273 (1%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  C+   +L + K IHG  V+       ++  +L+ +Y++C+   +A ++     ++ +
Sbjct: 119 LRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDV 178

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W +++ G      A +S +LF+EM   G+ PN  T+A+ L  C+    L  GK+ H  
Sbjct: 179 VSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQ 238

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
             +  +  + L + ++LV++YA+ G++  A  +F  M  +++VT+  L+ GY  +G+   
Sbjct: 239 AFKLGLLLD-LFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTG 297

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC-M 555
            LKLF  M +  +K +  T+  VL  C++S  + +GQ     +  I   +   E   C +
Sbjct: 298 VLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLI--IKCGYEGNEFIGCGL 355

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           VD+Y + GL   A  +  K    P   +W+ L+
Sbjct: 356 VDMYSKCGLAIDAIGVF-KTIKKPDIVVWSALI 387


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 219/675 (32%), Positives = 348/675 (51%), Gaps = 35/675 (5%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAAS----HDVVLDS-FAHIIF-------CCG 85
           + L   L  F      +K  ++  +++++A      H  V+ S F++ +F          
Sbjct: 7   LKLAGDLSSFTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYA 66

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           K  +L  G+QL         ++N      +VT        + A  L  +   R    WN 
Sbjct: 67  KCGSLEDGRQL----FDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNS 122

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
           ++S + +     EAL  +  M       + +T+ S L AC  + D++ G  +HS I    
Sbjct: 123 MVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSP 182

Query: 206 EWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
             S +++ +ALV MY K G V+ A+++FD+M +R+ VSWN++I+ Y   G   EA ++F 
Sbjct: 183 CLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQ 242

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM----RTQETYLDSVATVIGLGAC 320
            M E  VE + +T  ++   C      K   E+ +R+    + +   + S A V     C
Sbjct: 243 VMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKC 302

Query: 321 SHVGALKLGKEIHGS-AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           S +   K  + I  S  +R    E      ++++ Y+     + A ++F   AE+++++W
Sbjct: 303 SRI---KEARFIFDSMPIRNVIAE-----TSMVSGYAMAASTKAARLMFTKMAERNVVSW 354

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N++++GYT     EE+  LF  + R  V P + T A+IL  CA +A+L  G + H ++L+
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLK 414

Query: 440 RAMF-----NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
                     + + + NSL++MY + G V E   VF  M  RD V++ ++I G+   G G
Sbjct: 415 HGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYG 474

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL+LF EM  +  KPDH+TM+ VLSAC H+G V EG+  F  MT  +G+ P  +H+ C
Sbjct: 475 NEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTC 534

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL GRAG L +AK II +MP  P S +W +LL AC++HRN  +G++ AEKL E    N
Sbjct: 535 MVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSN 594

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           SG YVL++NMYA  G W     VR  MR  GV K PGC+W+        F+V D S+ + 
Sbjct: 595 SGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRK 654

Query: 675 QEIYPLLGGLTELMK 689
           ++I+ LL  L   M+
Sbjct: 655 KQIHSLLDILIAEMR 669


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 208/633 (32%), Positives = 325/633 (51%), Gaps = 76/633 (12%)

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
           +L+    +   +N A  L +N     P   + LIS     G   EA+ +Y  +Q R I+ 
Sbjct: 17  RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 76

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLF 232
           D   + +  KAC    D    + VH     C   S +FV NAL+  YGK   V+ ARR+F
Sbjct: 77  DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D ++ RD VSW ++ S Y   G  ++   +F EM   GV+ N +T ++I           
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSI----------- 185

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN--VRNA 350
                                   L AC+ +  LK GKEIHG AVR  +G   N  V +A
Sbjct: 186 ------------------------LPACAELKDLKSGKEIHGFAVR--HGMVVNLFVCSA 219

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY--------------------THLD 390
           L+++Y++C  +R A ++F +   + +++WN +L+ Y                       D
Sbjct: 220 LVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 279

Query: 391 CA---------------EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
            A               EE+  +FR+M + G +PN +TI+SILP C+   NL+ GKE HC
Sbjct: 280 EATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHC 339

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y+ R     + L    +L+ MYA+ G +  +++VFD+M R+D V + ++I    + G G+
Sbjct: 340 YVFRHWKVGD-LTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGK 398

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL LF++M  ++++P+ VT   VLS CSHS LV EG + F  M   + + P   H++C+
Sbjct: 399 EALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCV 458

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VD+Y RAG LN+A + I  MP  PT++ W  LL AC++++N  + + +A+KL E  P N 
Sbjct: 459 VDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNP 518

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G YV + N+      W + ++VR  M++ G+ K PGC+W+  GN    F+V D SN+++ 
Sbjct: 519 GNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESD 578

Query: 676 EIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           +IY  L  L E MK AGY    ++  ++   EE
Sbjct: 579 KIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEE 611



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 189/374 (50%), Gaps = 1/374 (0%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           K++H  A   G+  +  +   L+  Y        A  + ++  +R  + W  L S YV+ 
Sbjct: 98  KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC 157

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVH 212
           GF  + + V+++M    ++ +  T  S+L AC E+ D+  G+ +H   +      +LFV 
Sbjct: 158 GFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVC 217

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           +ALVS+Y K   V  AR +FD M  RD VSWN +++AY     +++ F LF++M  +GV 
Sbjct: 218 SALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVR 277

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            +  TWN + GGC+  G  +  +E+  +M+      + +     L ACS    L++GKEI
Sbjct: 278 ADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEI 337

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           H    R           AL+ MY++C DL  +  +F M   K ++ WN+M+         
Sbjct: 338 HCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNG 397

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           +E+ FLF +M  S V+PN VT   +L  C+    ++ G +    + R  +       ++ 
Sbjct: 398 KEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSC 457

Query: 453 LVEMYARSGKVPEA 466
           +V++Y+R+G++ EA
Sbjct: 458 VVDIYSRAGRLNEA 471



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 165/390 (42%), Gaps = 89/390 (22%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + + I+  C ++K L  GK++H  A+  G+  N  +   LV+ YA       A  + +  
Sbjct: 181 TVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLM 240

Query: 136 NIRYPLPWNLLISLYV----------------RDGFYA-------------------EAL 160
             R  + WN +++ Y                 RDG  A                   EA+
Sbjct: 241 PHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAV 300

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW---SLFVHNALVS 217
            ++++MQ    + +  T  S+L AC    ++  G+ +H  +     W    L    AL+ 
Sbjct: 301 EMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYV--FRHWKVGDLTSTTALLY 358

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY K G ++++R +FD M  +D V+WNTMI A A  G  KEA  LF +M    V+ N +T
Sbjct: 359 MYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVT 418

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
                        F GVL                        CSH   ++ G +I  S  
Sbjct: 419 -------------FTGVLS----------------------GCSHSRLVEEGVQIFNSMG 443

Query: 338 RGCYGEYE-NVRNALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSG---YTHLDCA 392
           R    E + N  + ++ +YSR   L  AY   + M  E +   W ++L+    Y +++ A
Sbjct: 444 RDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELA 503

Query: 393 EESAFLFREMFRSGVEP----NYVTIASIL 418
           + SA   +++F   +EP    NYV++ +IL
Sbjct: 504 KISA---KKLFE--IEPNNPGNYVSLFNIL 528


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 215/653 (32%), Positives = 338/653 (51%), Gaps = 41/653 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +A   + R+       DV   +F  ++  CG +  LA+G+++H   I  G E
Sbjct: 170 YAKAGYFDEALNLYHRMLWVGIRPDVY--TFPCVLRTCGGLPDLARGREVHLHVIRYGFE 227

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +V  L+T Y       +A  + +    R  + WN +IS Y  +    E L ++  M
Sbjct: 228 SDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMM 287

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           +   +  D  T  SV+ AC  + D   GR VH   I       + V+N+L+ M+   G  
Sbjct: 288 REFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCW 347

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D A  +F KM  +D VSW  MIS Y   GL ++A + +  M+ EGV  + IT        
Sbjct: 348 DEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEIT-------- 399

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                    +A+V  L AC+ +G L  G  +H  A R     Y 
Sbjct: 400 -------------------------IASV--LSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V N+LI MYS+C+ +  A  +F     K++I+W S++ G      + E+ F F++M  S
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS 492

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            ++PN VT+ S+L  CAR+  L  GKE H + LR  +  +  L  N+L++MY R G++  
Sbjct: 493 -LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP-NALLDMYVRCGRMEP 550

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A + F+    +D  ++  L+ GY  QG+G +A++LF +M ++ + PD +T  ++L ACS 
Sbjct: 551 AWNQFN-SCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSR 609

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           SG+V +G + FE M   + I P L+H+A +VDL GRAG L  A E I KMP  P  A+W 
Sbjct: 610 SGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWG 669

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LL AC+I++N  +GE AA+ + E   ++ GYY+L+ N+YA +G WD++A+VR  MR+  
Sbjct: 670 ALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENR 729

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
           +   PGC+WV+       FL  D  + Q +EI  +L G  E M+  G  + ++
Sbjct: 730 LTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKD 782



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/524 (27%), Positives = 251/524 (47%), Gaps = 49/524 (9%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           +G+L KA      ++    S  V  +++  ++  C   +A ++G ++H+           
Sbjct: 72  KGDLEKALIHLDSMQELQVS--VEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGV 129

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            L   L++ +  F     A ++      R    WN+L+  Y + G++ EAL +Y +M   
Sbjct: 130 RLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWV 189

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVA 228
            IR D +T+P VL+ CG + D+  GR VH   I    E  + V NAL++MY K G +  A
Sbjct: 190 GIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSA 249

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           R +FD+M  RD +SWN MIS Y    +  E  +LF  M+E  V+ +++T  ++       
Sbjct: 250 RLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSV------- 302

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                                       + AC  +G  +LG+E+HG  ++  +    +V 
Sbjct: 303 ----------------------------ISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N+LI M+S       A ++F     K +++W +M+SGY      E++   +  M   GV 
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVV 394

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+ +TIAS+L  CA +  L  G   H +  R  +   ++++ NSL++MY++   + +A  
Sbjct: 395 PDEITIASVLSACAGLGLLDKGIMLHEFADRTGL-TSYVIVANSLIDMYSKCRCIDKALE 453

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VF  +  ++ +++TS+I G  +      AL  F++M  + +KP+ VT+V+VLSAC+  G 
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGA 512

Query: 529 VVEGQK----QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           +  G++             G  P       ++D+Y R G +  A
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPN-----ALLDMYVRCGRMEPA 551



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 213/456 (46%), Gaps = 39/456 (8%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           S+I    P +L++ L ++ G   +AL     MQ  ++  +  TY ++L+ C        G
Sbjct: 55  SSITAQNPNSLILELCLK-GDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEG 113

Query: 195 RVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             VHS +        + + NAL+SM+ +FG +  A  +F KM ER               
Sbjct: 114 SRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAER--------------- 158

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                               ++ +WN + GG  + G F   L L  RM       D    
Sbjct: 159 --------------------DLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTF 198

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L  C  +  L  G+E+H   +R  +    +V NALITMY +C D+  A ++F     
Sbjct: 199 PCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPR 258

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +  I+WN+M+SGY   D   E   LF  M    V+P+ +T+ S++  C  + + + G+E 
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H Y+++     E + + NSL++M++  G   EA+ VF  M  +D V++T++I+GY   G 
Sbjct: 319 HGYVIKTGFVAE-VSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGL 377

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A++ +  M    + PD +T+ +VLSAC+  GL+ +G    E      G+   +    
Sbjct: 378 PEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE-FADRTGLTSYVIVAN 436

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            ++D+Y +   ++KA E+  ++P     +  + +LG
Sbjct: 437 SLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILG 472


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 215/653 (32%), Positives = 338/653 (51%), Gaps = 41/653 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +A   + R+       DV   +F  ++  CG +  LA+G+++H   I  G E
Sbjct: 170 YAKAGYFDEALNLYHRMLWVGIRPDVY--TFPCVLRTCGGLPDLARGREVHLHVIRYGFE 227

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +V  L+T Y       +A  + +    R  + WN +IS Y  +    E L ++  M
Sbjct: 228 SDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMM 287

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           +   +  D  T  SV+ AC  + D   GR VH   I       + V+N+L+ M+   G  
Sbjct: 288 REFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCW 347

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D A  +F KM  +D VSW  MIS Y   GL ++A + +  M+ EGV  + IT        
Sbjct: 348 DEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEIT-------- 399

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                    +A+V  L AC+ +G L  G  +H  A R     Y 
Sbjct: 400 -------------------------IASV--LSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V N+LI MYS+C+ +  A  +F     K++I+W S++ G      + E+ F F++M  S
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS 492

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            ++PN VT+ S+L  CAR+  L  GKE H + LR  +  +  L  N+L++MY R G++  
Sbjct: 493 -LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP-NALLDMYVRCGRMEP 550

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A + F+    +D  ++  L+ GY  QG+G +A++LF +M ++ + PD +T  ++L ACS 
Sbjct: 551 AWNQFN-SCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSR 609

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           SG+V +G + FE M   + I P L+H+A +VDL GRAG L  A E I KMP  P  A+W 
Sbjct: 610 SGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWG 669

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LL AC+I++N  +GE AA+ + E   ++ GYY+L+ N+YA +G WD++A+VR  MR+  
Sbjct: 670 ALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENR 729

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
           +   PGC+WV+       FL  D  + Q +EI  +L G  E M+  G  + ++
Sbjct: 730 LTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKD 782



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 143/524 (27%), Positives = 251/524 (47%), Gaps = 49/524 (9%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           +G+L KA      ++    S  V  +++  ++  C   +A ++G ++H+           
Sbjct: 72  KGDLEKALIHLDSMQELQVS--VEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGV 129

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            L   L++ +  F     A ++      R    WN+L+  Y + G++ EAL +Y +M   
Sbjct: 130 RLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWV 189

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVA 228
            IR D +T+P VL+ CG + D+  GR VH   I    E  + V NAL++MY K G +  A
Sbjct: 190 GIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSA 249

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           R +FD+M  RD +SWN MIS Y    +  E  +LF  M+E  V+ +++T  ++       
Sbjct: 250 RLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSV------- 302

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                                       + AC  +G  +LG+E+HG  ++  +    +V 
Sbjct: 303 ----------------------------ISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N+LI M+S       A ++F     K +++W +M+SGY      E++   +  M   GV 
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVV 394

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+ +TIAS+L  CA +  L  G   H +  R  +   ++++ NSL++MY++   + +A  
Sbjct: 395 PDEITIASVLSACAGLGLLDKGIMLHEFADRTGL-TSYVIVANSLIDMYSKCRCIDKALE 453

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VF  +  ++ +++TS+I G  +      AL  F++M  + +KP+ VT+V+VLSAC+  G 
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGA 512

Query: 529 VVEGQK----QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           +  G++             G  P       ++D+Y R G +  A
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPN-----ALLDMYVRCGRMEPA 551



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 213/456 (46%), Gaps = 39/456 (8%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           S+I    P +L++ L ++ G   +AL     MQ  ++  +  TY ++L+ C        G
Sbjct: 55  SSITAQNPNSLILELCLK-GDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEG 113

Query: 195 RVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             VHS +        + + NAL+SM+ +FG +  A  +F KM ER               
Sbjct: 114 SRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAER--------------- 158

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                               ++ +WN + GG  + G F   L L  RM       D    
Sbjct: 159 --------------------DLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTF 198

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L  C  +  L  G+E+H   +R  +    +V NALITMY +C D+  A ++F     
Sbjct: 199 PCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPR 258

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +  I+WN+M+SGY   D   E   LF  M    V+P+ +T+ S++  C  + + + G+E 
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H Y+++     E + + NSL++M++  G   EA+ VF  M  +D V++T++I+GY   G 
Sbjct: 319 HGYVIKTGFVAE-VSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGL 377

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A++ +  M    + PD +T+ +VLSAC+  GL+ +G    E      G+   +    
Sbjct: 378 PEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE-FADRTGLTSYVIVAN 436

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            ++D+Y +   ++KA E+  ++P     +  + +LG
Sbjct: 437 SLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILG 472


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 206/616 (33%), Positives = 333/616 (54%), Gaps = 14/616 (2%)

Query: 86  KVKALAQGKQLHACAI-ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWN 144
           ++K+ +Q KQLHA  I    L      +  +++ Y +  L + A  L +       L W 
Sbjct: 17  RIKSKSQAKQLHAQFIRTQSLSHTSASI--VISIYTNLKLLHEALLLFKTLKSPPVLAWK 74

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DA 203
            +I  +     +++AL  + +M++     D+  +PSVLK+C  MMD+ FG  VH  I   
Sbjct: 75  SVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRL 134

Query: 204 CHEWSLFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWNTMISAYASKGLW--KE 258
             +  L+  NAL++MY K    G       +FD+M +R + S +  + A      +    
Sbjct: 135 GMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDS 194

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
             ++F  M  +    +V+++NTI  G  ++G ++  L ++  M T +   DS      L 
Sbjct: 195 VRRVFEVMPRK----DVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLP 250

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
             S    +  GKEIHG  +R        + ++L+ MY++   +  +  +F     +  I+
Sbjct: 251 IFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS 310

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WNS+++GY       E+  LFR+M  + V+P  V  +S++P CA +A L  GK+ H Y+L
Sbjct: 311 WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVL 370

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R   F  ++ + ++LV+MY++ G +  A+ +FD M+  DEV++T++I G+ + G G  A+
Sbjct: 371 RGG-FGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAV 429

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LFEEM +  +KP+ V  VAVL+ACSH GLV E    F  MT +YG+  +LEH+A + DL
Sbjct: 430 SLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADL 489

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L +A   I+KM   PT ++W+TLL +C +H+N  + E  AEK+     EN G Y
Sbjct: 490 LGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAY 549

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL+ NMYA+ G W ++AK+R  MR  G+RK P C+W++  N    F+  D S+    +I 
Sbjct: 550 VLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKIN 609

Query: 679 PLLGGLTELMKDAGYV 694
             L  + E M+  GYV
Sbjct: 610 EFLKAVMEQMEKEGYV 625



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 37/233 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ +I  C  +  L  GKQLH   +  G   N  +   LV  Y+       A  + +  
Sbjct: 345 AFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRM 404

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           N+   + W  +I  +   G   EA+ ++++M+ + ++ +   + +VL AC  +  VD   
Sbjct: 405 NVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAW 464

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
              + +   +     L  + A+  + G+ G+++ A     KM +E     W+T++S+   
Sbjct: 465 GYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSV 524

Query: 250 -------------------------------YASKGLWKEAFQLFVEMQEEGV 271
                                          YAS G WKE  +L + M+++G+
Sbjct: 525 HKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGL 577


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 201/619 (32%), Positives = 322/619 (52%), Gaps = 37/619 (5%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+ ++  C   + +  G+Q+HA  + +G EK+      LV  Y      + A  + E   
Sbjct: 205 FSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP 264

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
               + WN LIS  V +G    A+ +  QM+S  +  + F   S+LKAC      D GR 
Sbjct: 265 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ 324

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H   I A  +   ++   LV MY K   +D A ++FD M  RD + WN +IS  +  G 
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGR 384

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EAF +F  +++EG+ VN  T   +                          L S A++ 
Sbjct: 385 HDEAFSIFYGLRKEGLGVNRTTLAAV--------------------------LKSTASLE 418

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
              A          +++H  A +  +    +V N LI  Y +C  L  A  +F+  +   
Sbjct: 419 AASAT---------RQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGD 469

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           II   SM++  +  D  E +  LF EM R G+EP+   ++S+L  CA ++  + GK+ H 
Sbjct: 470 IIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           ++++R  F       N+LV  YA+ G + +A+  F  +  R  V+++++I G    G G+
Sbjct: 530 HLIKR-QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL+LF  M    I P+H+TM +VL AC+H+GLV E ++ F  M  ++GI    EH++CM
Sbjct: 589 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 648

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           +DL GRAG L+ A E++  MP+   +++W  LLGA ++H++  +G+ AAEKL    PE S
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G +VL+AN YA++G W+++AKVR  M+D  ++K P  +WV+  +    F+V D S+   +
Sbjct: 709 GTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTK 768

Query: 676 EIYPLLGGLTELMKDAGYV 694
           EIY  L  L +LM  AGY+
Sbjct: 769 EIYSKLDELGDLMSKAGYI 787



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 240/516 (46%), Gaps = 45/516 (8%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-ENSNIRYPLPWNLLISLYV 151
           G Q+HA A+A G   +  +   LV  Y  F   ++A  +  E  + R  + WN L+S YV
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 178

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
           ++    +A+ V+ +M    I+   F +  V+ AC    ++D GR VH+  +   +E  +F
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVF 238

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
             NALV MY K G+VD+A  +F+KM + D VSWN +IS     G    A +L ++M+  G
Sbjct: 239 TANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSG 298

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           +  NV   ++I                                   L AC+  GA  LG+
Sbjct: 299 LVPNVFMLSSI-----------------------------------LKACAGAGAFDLGR 323

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           +IHG  ++      + +   L+ MY++   L  A  +F   + + +I WN+++SG +H  
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGG 383

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA-MFNEHLLL 449
             +E+  +F  + + G+  N  T+A++L   A +      ++ H    +   +F+ H++ 
Sbjct: 384 RHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV- 442

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N L++ Y +   + +A  VF+  S  D +  TS+I        G  A+KLF EM +  +
Sbjct: 443 -NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGL 501

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +PD   + ++L+AC+      +G++    +     +       A +V  Y + G +  A+
Sbjct: 502 EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAKCGSIEDAE 560

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
              + +P     + W+ ++G    H   G G+ A E
Sbjct: 561 LAFSSLPERGVVS-WSAMIGGLAQH---GHGKRALE 592



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 178/389 (45%), Gaps = 54/389 (13%)

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + N L+S Y K  +   ARR+FD++ +   VSW+++++AY++ GL + A Q F  M+ EG
Sbjct: 39  LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG 98

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           V             C        VL+                          V   +LG 
Sbjct: 99  V-------------CCNEFALPVVLKC-------------------------VPDAQLGA 120

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHL 389
           ++H  A+   +G    V NAL+ MY     +  A  +F +  +E++ ++WN ++S Y   
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 180

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
           D   ++  +F EM  SG++P     + ++  C    N+  G++ H  ++R   + + +  
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMG-YEKDVFT 239

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N+LV+MY + G+V  A  +F+ M   D V++ +LI+G  + G    A++L  +M  + +
Sbjct: 240 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 299

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAG 563
            P+   + ++L AC+ +G        F+    I+G   +    +       +VD+Y +  
Sbjct: 300 VPNVFMLSSILKACAGAG-------AFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            L+ A ++   M +     +W  L+  C 
Sbjct: 353 FLDDAMKVFDWMSHRDL-ILWNALISGCS 380



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 12/288 (4%)

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           AL  G  +H + ++   G   ++RN LI+ YS+C+    A  +F    +   ++W+S+++
Sbjct: 19  ALLPGAHLHANLLKS--GFLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
            Y++      +   F  M   GV  N   +  +L     V + Q G + H   +    F 
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATG-FG 132

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
             + + N+LV MY   G + +A+ VFD   S R+ V++  L++ Y    +   A+++F E
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M  + I+P       V++AC+ S  +  G +Q   M    G    +     +VD+Y + G
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIDAG-RQVHAMVVRMGYEKDVFTANALVDMYVKMG 251

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
            ++ A  I  KMP +   + W  L+  C ++   G    A E LL+ +
Sbjct: 252 RVDIASVIFEKMPDSDVVS-WNALISGCVLN---GHDHRAIELLLQMK 295


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 201/660 (30%), Positives = 344/660 (52%), Gaps = 45/660 (6%)

Query: 44  LKDFAGRGNLSKAFEAF-TRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           L  +A RG+++   + F + + +    ++  L +   ++  C   K L QG+ +H+  I 
Sbjct: 286 LNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTT---VLKGCANSKNLKQGQVIHSLIIK 342

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISLYVRDGFYAEAL 160
            G E N  +   LV  Y+   L  +A  + +   I+ P  + W+ LI+   + G   E++
Sbjct: 343 CGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKT--IKKPDIVVWSALITCLDQQGQSEESI 400

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMY 219
            ++  M+      + +T  S+L A     ++ +G+ +H+C+     E  + V NALV+MY
Sbjct: 401 KLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMY 460

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G V    +L++ M++RD +SWN  +S     G++     +F  M EEG   N+ T+ 
Sbjct: 461 MKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFI 520

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           +I                                   LG+CS +  +  G+++H   ++ 
Sbjct: 521 SI-----------------------------------LGSCSCLFDVHYGRQVHAHIIKN 545

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
              +   V  ALI MY++C  L  A + F   + + + TW  +++ Y   +  E++   F
Sbjct: 546 QLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYF 605

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R+M + GV+PN  T+A  L  C+ +A+L+ G++ H  + +    ++ + + ++LV+MYA+
Sbjct: 606 RQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSD-MFVGSALVDMYAK 664

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G + EA+++F+ + RRD + + ++I GY   G+G  AL  F  M    I PD VT   +
Sbjct: 665 CGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGI 724

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           LSACSH GLV EG++ F  M   +GI P ++H ACMVD+ GR G  ++ ++ I KM  + 
Sbjct: 725 LSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQ 784

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
            + +W T+LGA ++H N  +GE AA KL E +PE    Y+L++N++A  G WD + +VR+
Sbjct: 785 NALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRS 844

Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            M   GV+K PGC+WV+A      F+  D S+ Q QEI+  L  L   +    YV K E+
Sbjct: 845 LMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEY 904



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 221/497 (44%), Gaps = 46/497 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C   ++L   K +H   +   +  +  L   LV  YA       A  ++     R  + W
Sbjct: 122 CASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSW 181

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
             LI   V +GF  +++ ++++MQ+  I  + FT  + LKAC   M +D G+ +H+    
Sbjct: 182 TALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFK 241

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                 LFV +ALV +Y K G++++A ++F  M E++ V+WN +++ YA +G      +L
Sbjct: 242 LGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKL 301

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M E  V+ N  T  T+  GC  + N                                
Sbjct: 302 FCSMMELDVKCNEFTLTTVLKGCANSKN-------------------------------- 329

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
              LK G+ IH   ++  Y   E +   L+ MYS+C     A  +FK   +  I+ W+++
Sbjct: 330 ---LKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSAL 386

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++       +EES  LF  M      PN  TI S+L       NLQ+G+  H  + +   
Sbjct: 387 ITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG- 445

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F   + + N+LV MY ++G V +   +++ M  RD +++ + ++G    G     L +F 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE--HFAC--MVDL 558
            M +    P+  T +++L +CS    V      + R    + I  QL+  +F C  ++D+
Sbjct: 506 HMLEEGFIPNMYTFISILGSCSCLFDV-----HYGRQVHAHIIKNQLDDNNFVCTALIDM 560

Query: 559 YGRAGLLNKAKEIITKM 575
           Y +   L  A     ++
Sbjct: 561 YAKCMYLEDADVAFNRL 577



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 139/273 (50%), Gaps = 5/273 (1%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  C+   +L + K IHG  V+       ++  +L+ +Y++C+   +A ++     ++ +
Sbjct: 119 LRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDV 178

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W +++ G      A +S +LF+EM   G+ PN  T+A+ L  C+    L  GK+ H  
Sbjct: 179 VSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQ 238

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
             +  +  + L + ++LV++YA+ G++  A  +F  M  +++VT+  L+ GY  +G+   
Sbjct: 239 AFKLGLLLD-LFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTG 297

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC-M 555
            LKLF  M +  +K +  T+  VL  C++S  + +GQ     +  I   +   E   C +
Sbjct: 298 VLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLI--IKCGYEGNEFIGCGL 355

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           VD+Y + GL   A  +  K    P   +W+ L+
Sbjct: 356 VDMYSKCGLAIDAIGVF-KTIKKPDIVVWSALI 387


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 217/650 (33%), Positives = 347/650 (53%), Gaps = 47/650 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALG 104
           ++  G LS   E F  + I+   H    D F +  I+  C   + L  G+QLH+  I   
Sbjct: 293 YSQNGFLSNVMELFLDM-ISCGIHP---DEFTYTSILSTCACFEYLEVGRQLHSAIIKKR 348

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              N  +   L+  YA       A    E+   R  + WN +I  YV++   A A  +++
Sbjct: 349 FTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFR 408

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M    I  D  +  S+L ACG +  ++ G+  H   +    E +LF  ++L+ MY K G
Sbjct: 409 RMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCG 468

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +  A + +  M ER  VS N +I+ YA K   KE+  L  EMQ  G++ + IT+ ++  
Sbjct: 469 DIKDAHKTYSSMPERSVVSVNALIAGYALKNT-KESINLLHEMQILGLKPSEITFASLID 527

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV-RGCYG 342
            C      KG  +++                             LG +IH + V RG   
Sbjct: 528 VC------KGSAKVI-----------------------------LGLQIHCAIVKRGLLC 552

Query: 343 EYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
             E +  +L+ MY   + L  A ILF + ++ KSI+ W +++SG+   +C++ +  L+RE
Sbjct: 553 GSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYRE 612

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  + + P+  T  ++L  CA +++L  G+E H  I     F+   L  ++LV+MYA+ G
Sbjct: 613 MRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTG-FDLDELTSSALVDMYAKCG 671

Query: 462 KVPEAKSVFD-LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
            V  +  VF+ L +++D +++ S+I G+   G  + ALK+F+EM ++ I PD VT + VL
Sbjct: 672 DVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVL 731

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           +ACSH+G V EG++ F+ M + YGI P+++H+ACMVDL GR G L +A+E I K+   P 
Sbjct: 732 TACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPN 791

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           + +WA LLGAC+IH +   G+ AA+KL+E  P++S  YVL++NMYAA+G WD+   +R  
Sbjct: 792 AMIWANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRT 851

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           M    ++KIPGC+W+  G   + F+  D S+    EI   L  LT L+KD
Sbjct: 852 MIKKDIQKIPGCSWIVVGQETNLFVAGDISHSSYDEISKALKHLTALIKD 901



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 146/518 (28%), Positives = 254/518 (49%), Gaps = 45/518 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++     + AL  G  +HA AI  G E +  +   L+  Y    + ++A  + +  
Sbjct: 219 TLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAI 278

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + WN ++ +Y ++GF +  + ++  M S  I  D FTY S+L  C     ++ GR
Sbjct: 279 SQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGR 338

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS I      S LFV+NAL+ MY K G +  A + F+ M  RD +SWN +I  Y  + 
Sbjct: 339 QLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEE 398

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           +   AF LF  M  +G+  + ++  +I   C   GN K                     V
Sbjct: 399 VEAGAFSLFRRMILDGIVPDEVSLASILSAC---GNIK---------------------V 434

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
           +  G   H  ++KLG E +  A            ++LI MYS+C D++ A+  +    E+
Sbjct: 435 LEAGQQFHCLSVKLGLETNLFA-----------GSSLIDMYSKCGDIKDAHKTYSSMPER 483

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           S+++ N++++GY  L   +ES  L  EM   G++P+ +T AS++ +C   A +  G + H
Sbjct: 484 SVVSVNALIAGYA-LKNTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIH 542

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGYGIQGE 493
           C I++R +      L  SL+ MY  S ++ +A  +F +  S +  V +T+LI+G+ IQ E
Sbjct: 543 CAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGH-IQNE 601

Query: 494 -GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
              VAL L+ EM  N I PD  T V VL AC+    + +G+   E  + I+     L+  
Sbjct: 602 CSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGR---EIHSLIFHTGFDLDEL 658

Query: 553 --ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
             + +VD+Y + G +  + ++  ++        W +++
Sbjct: 659 TSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMI 696



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 226/485 (46%), Gaps = 41/485 (8%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           D FT+   L AC ++ ++  GR VHSC I +  E + F   AL+ +Y K   +  AR +F
Sbjct: 46  DQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIF 105

Query: 233 DK--MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE------------------ 272
                     VSW  +IS Y   GL  EA  +F +M+   V                   
Sbjct: 106 ASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVALVTVLNAYISLGKL 165

Query: 273 --------------VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ--ETYLDSVATVIG 316
                          NV+ WN +  G  +T +++  L    +M     ++   ++A+V  
Sbjct: 166 DDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASV-- 223

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L A + + AL  G  +H  A++  +     V ++LI MY +C+    A  +F   ++K++
Sbjct: 224 LSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNM 283

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           I WN+ML  Y+          LF +M   G+ P+  T  SIL  CA    L+ G++ H  
Sbjct: 284 IVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSA 343

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           I+++  F  +L + N+L++MYA++G + EA   F+ M+ RD +++ ++I GY  +     
Sbjct: 344 IIKK-RFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAG 402

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A  LF  M  + I PD V++ ++LSAC +   V+E  +QF  ++   G+   L   + ++
Sbjct: 403 AFSLFRRMILDGIVPDEVSLASILSACGNIK-VLEAGQQFHCLSVKLGLETNLFAGSSLI 461

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           D+Y + G +  A +  + MP     ++ A + G    +    I      ++L  +P    
Sbjct: 462 DMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNTKESINLLHEMQILGLKPSEIT 521

Query: 617 YYVLI 621
           +  LI
Sbjct: 522 FASLI 526



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 209/428 (48%), Gaps = 40/428 (9%)

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNI--RYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           + V +  ++  Y S    ++AC L +   I  R  + WN++IS + +   Y EAL  + Q
Sbjct: 148 DQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQ 207

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           M    ++    T  SVL A   +  ++ G +VH+  I    E S++V ++L++MYGK   
Sbjct: 208 MSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQM 267

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
            D AR++FD + +++ + WN M+  Y+  G      +LF++M   G+  +  T+ +I   
Sbjct: 268 PDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSI--- 324

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           L  C+    L++G+++H + ++  +   
Sbjct: 325 --------------------------------LSTCACFEYLEVGRQLHSAIIKKRFTSN 352

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V NALI MY++   L+ A   F+    +  I+WN+++ GY   +    +  LFR M  
Sbjct: 353 LFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMIL 412

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G+ P+ V++ASIL  C  +  L+ G++FHC  ++  +   +L   +SL++MY++ G + 
Sbjct: 413 DGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGL-ETNLFAGSSLIDMYSKCGDIK 471

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           +A   +  M  R  V+  +LIAGY ++   + ++ L  EM    +KP  +T  +++  C 
Sbjct: 472 DAHKTYSSMPERSVVSVNALIAGYALKNT-KESINLLHEMQILGLKPSEITFASLIDVCK 530

Query: 525 HSGLVVEG 532
            S  V+ G
Sbjct: 531 GSAKVILG 538


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 211/685 (30%), Positives = 345/685 (50%), Gaps = 65/685 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +AG  + +KAF+ F R++      + +  +F  I+  C     L + +++H    A G+E
Sbjct: 154 YAGNNHPAKAFDTFERMKDANIEPNRI--TFLSILKACNNYSMLEKAREIHTVVKASGME 211

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L+T Y+     + AC + +    R  + W  +I    +     EA  +Y++M
Sbjct: 212 TDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKM 271

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQV 225
               I  +  T+ S+L +C     ++ GR +HS I +   E  + V NAL++MY K   +
Sbjct: 272 LQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCI 331

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR  FD+M +RD +SW+ MI+ YA  G     +Q    + E                 
Sbjct: 332 QDARETFDRMSKRDVISWSAMIAGYAQSG-----YQDKESLDE----------------- 369

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG----------- 334
                   V +LL RMR +  + + V  +  L ACS  GAL+ G++IH            
Sbjct: 370 --------VFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDR 421

Query: 335 ---SAVRGCYGEYENVRNA-----------------LITMYSRCKDLRHAYILFKMTAEK 374
              +A+   Y +  ++  A                 L+TMY +C DL  A  +F   + +
Sbjct: 422 SLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTR 481

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++++WN M++GY       +   L   M   G +P+ VTI SIL  C  ++ L+ GK  H
Sbjct: 482 NVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVH 541

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              ++  + ++ ++   SL+ MY++ G+V EA++VFD +S RD V + +++AGYG  G G
Sbjct: 542 AEAVKLGLESDTVVA-TSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIG 600

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             A+ LF+ M K ++ P+ +T  AV+SAC  +GLV EG++ F  M   + + P  +H+ C
Sbjct: 601 PEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGC 660

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL GRAG L +A+E I +MP  P  ++W  LLGAC+ H N  + EWAA  +L   P N
Sbjct: 661 MVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSN 720

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           +  YV ++N+YA  G WD   KVR  M D G++K  G + ++       F+ +D ++ + 
Sbjct: 721 ASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEI 780

Query: 675 QEIYPLLGGLTELMKDAGYVVKEEF 699
             I+  L  LT+ MK+AGY     F
Sbjct: 781 DSIHAELEMLTKEMKEAGYTPDMRF 805



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 225/444 (50%), Gaps = 46/444 (10%)

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLF 210
           + G   EA+ +   ++ R +  ++ TY  +++ C ++   + G++VH  +D       ++
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + N+L++ Y KFG V    ++F +M  RD V+W++MI+AYA      +AF  F  M++  
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           +E N IT+ +I                                   L AC++   L+  +
Sbjct: 175 IEPNRITFLSI-----------------------------------LKACNNYSMLEKAR 199

Query: 331 EIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           EIH + V+    E +  V  ALITMYS+C ++  A  +F+   E+++++W +++      
Sbjct: 200 EIH-TVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQH 258

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
               E+  L+ +M ++G+ PN VT  S+L  C     L  G+  H +I  R +  + +++
Sbjct: 259 RKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETD-VVV 317

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG-EGRVAL----KLFEEM 504
            N+L+ MY +   + +A+  FD MS+RD ++++++IAGY   G + + +L    +L E M
Sbjct: 318 ANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERM 377

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            +  + P+ VT +++L ACS  G + +G +Q     S  G          + ++Y + G 
Sbjct: 378 RREGVFPNKVTFMSILKACSVHGALEQG-RQIHAEISKVGFESDRSLQTAIFNMYAKCGS 436

Query: 565 LNKAKEIITKMPYTPTSAMWATLL 588
           + +A+++ +KM      A WA+LL
Sbjct: 437 IYEAEQVFSKMENKNVVA-WASLL 459



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 30  INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           ++  +++  NL+  +  +A  G+++K FE  + +++     D V  +   I+  CG + A
Sbjct: 478 MSTRNVVSWNLM--IAGYAQSGDIAKVFELLSSMKVEGFQPDRV--TIISILEACGALSA 533

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L +GK +HA A+ LGLE + V+   L+  Y+       A  + +  + R  + WN +++ 
Sbjct: 534 LERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAG 593

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEW 207
           Y + G   EA+ ++K+M   R+  +  T+ +V+ ACG    V  GR +   +  D   + 
Sbjct: 594 YGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKP 653

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYAS 252
               +  +V + G+ G++  A     +M  E D   W+ ++ A  S
Sbjct: 654 GKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKS 699


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 219/670 (32%), Positives = 350/670 (52%), Gaps = 70/670 (10%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFA--HIIFCC---GKVKALAQGKQLHACAIALGLEKNP 109
           +A EAF  +++     ++ L SF    +   C   G +  L  GKQLH  ++ +G +K  
Sbjct: 177 QALEAFRAMQM----ENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKT- 231

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
                L+  YA     +++  L E+   R  + WN +IS + +   ++EAL  ++ M   
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDV 227
            +  D  T  SVL AC  +  +D G+ +H+ +   ++   + FV +ALV MY    QV+ 
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVES 351

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
            RR+FD +L R    WN MIS YA  GL ++A  LF+EM    ++V  +  NT       
Sbjct: 352 GRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEM----IKVAGLLPNT------- 400

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                             T + SV     + AC H  A    + IHG AV+  + E   V
Sbjct: 401 ------------------TTMASV-----MPACVHCEAFSNKESIHGYAVKLGFKEDRYV 437

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR--- 404
           +NAL+ MYSR   +  +  +F     +  ++WN+M++GY        +  L  EM R   
Sbjct: 438 QNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMEN 497

Query: 405 --------------SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
                            +PN +T+ ++LP CA +A +  GKE H Y +R  M    + + 
Sbjct: 498 TKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRN-MLASDITVG 556

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-----N 505
           ++LV+MYA+ G +  ++ VF+ M  ++ +T+  LI   G+ G+G  AL+LF+ M      
Sbjct: 557 SALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGR 616

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
             + KP+ VT + V +ACSHSGL+ EG   F RM   +G+ P  +H+AC+VDL GRAG L
Sbjct: 617 GGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQL 676

Query: 566 NKAKEIITKMPYT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
            +A E++  MP        W++LLGAC+IH+N  +GE AA+ LL   P  + +YVL++N+
Sbjct: 677 EEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNI 736

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           Y++ G W+K  +VR  MR +GV+K PGC+W++  +    F+  D S+ Q+++++  L  L
Sbjct: 737 YSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETL 796

Query: 685 TELMKDAGYV 694
           +E M+  GYV
Sbjct: 797 SEKMRKEGYV 806



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 170/627 (27%), Positives = 285/627 (45%), Gaps = 74/627 (11%)

Query: 2   PPSSSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFT 61
           PP S    +   + S L    P K   P  +      + ++ L+      +  +A   + 
Sbjct: 30  PPPS----IQKPTASPLTSKTPPKPTSPSRST----ASWVDALRSRTRSNDFREAISTYI 81

Query: 62  RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYA 120
            + ++ A  D    +F  ++     ++ L  G+Q+HA A+  G   + V V   LV  Y 
Sbjct: 82  EMTVSGARPDNF--AFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYG 139

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
                 + C + +    R  + WN  I+   R   + +AL  ++ MQ   +   +FT  S
Sbjct: 140 KCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVS 199

Query: 181 VLKAC---GEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           V  AC   G M  +  G+ +H       +   F +NAL++MY K G+VD ++ LF+  ++
Sbjct: 200 VALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVD 259

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           RD VSWNTMIS+++    + EA   F  M  EGVE++ +T                    
Sbjct: 260 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVT-------------------- 299

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC-YGEYENVRNALITMYS 356
                        +A+V  L ACSH+  L +GKEIH   +R     E   V +AL+ MY 
Sbjct: 300 -------------IASV--LPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYC 344

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIA 415
            C+ +     +F     + I  WN+M+SGY      E++  LF EM + +G+ PN  T+A
Sbjct: 345 NCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMA 404

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           S++P C       + +  H Y ++   F E   + N+L++MY+R GK+  ++++FD M  
Sbjct: 405 SVMPACVHCEAFSNKESIHGYAVKLG-FKEDRYVQNALMDMYSRMGKMDISETIFDSMEV 463

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-----------------IKPDHVTMVA 518
           RD V++ ++I GY + G    AL L  EM + +                  KP+ +T++ 
Sbjct: 464 RDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMT 523

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           VL  C+    + +G K+         +   +   + +VD+Y + G LN ++ +  +MP  
Sbjct: 524 VLPGCAALAAIAKG-KEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-N 581

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAE 605
                W  L+ AC +H   G GE A E
Sbjct: 582 KNVITWNVLIMACGMH---GKGEEALE 605



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 123/511 (24%), Positives = 217/511 (42%), Gaps = 38/511 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  F+     S+A   F  + +     D V  + A ++  C  ++ L  GK++HA  +  
Sbjct: 269 ISSFSQSDRFSEALAFFRLMVLEGVELDGV--TIASVLPACSHLERLDVGKEIHAYVLRN 326

Query: 104 G-LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
             L +N  +   LV  Y +     +   + ++   R    WN +IS Y R+G   +AL +
Sbjct: 327 NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALIL 386

Query: 163 YKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           + +M +   +  +  T  SV+ AC           +H   +    +   +V NAL+ MY 
Sbjct: 387 FIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYS 446

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ--EEGVEVNVITW 278
           + G++D++  +FD M  RD VSWNTMI+ Y   G +  A  L  EMQ  E   +V     
Sbjct: 447 RMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDN 506

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
           +   GG  +                     +++  +  L  C+ + A+  GKEIH  A+R
Sbjct: 507 DDEKGGPYKP--------------------NAITLMTVLPGCAALAAIAKGKEIHAYAIR 546

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
                   V +AL+ MY++C  L  +  +F     K++ITWN ++         EE+  L
Sbjct: 547 NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALEL 606

Query: 399 FREMF----RSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           F+ M     R G  +PN VT  ++   C+    +  G      +            +  +
Sbjct: 607 FKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACV 666

Query: 454 VEMYARSGKVPEAKSVFDLMSRR-DEV-TYTSLIAGYGIQGE---GRVALKLFEEMNKNQ 508
           V++  R+G++ EA  + + M    D+V  ++SL+    I      G VA K    +  N 
Sbjct: 667 VDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPN- 725

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           +   +V +  + S+       +E +K   +M
Sbjct: 726 VASHYVLLSNIYSSAGLWNKAMEVRKNMRQM 756


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/521 (37%), Positives = 287/521 (55%), Gaps = 38/521 (7%)

Query: 180 SVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER 238
           S+L+AC    DV  GR VH S + AC  W     N L+ MY K G +D A  +FD M  R
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
             V+W ++I+AYA +GL  EA +LF EM  EGV  ++ T  T+                 
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTV----------------- 105

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
                             L AC+  G+L+ GK++H             V NAL+ MY++C
Sbjct: 106 ------------------LHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKC 147

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
             +  A  +F     K II+WN+M+ GY+      E+  LF +M    ++P+  T+A IL
Sbjct: 148 GSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACIL 206

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
           P CA +A+L  GKE H +ILR   F++  +  N+LV+MY + G    A+ +FD++  +D 
Sbjct: 207 PACASLASLDRGKEVHGHILRNGFFSDQQVA-NALVDMYVKCGVPVLARLLFDMIPTKDL 265

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           +T+T +IAGYG+ G G  A+  F EM +  I+PD V+ +++L ACSHSGL+ EG + F  
Sbjct: 266 ITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNV 325

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
           M     + P+LEH+AC+VDL  R+G L  A + I  MP  P + +W  LL  C+IH +  
Sbjct: 326 MQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVK 385

Query: 599 IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
           + E  AE + E  PEN+GYYVL+AN YA    W+++ K+R  +   G++K PGC+W++  
Sbjct: 386 LAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVK 445

Query: 659 NVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           +    FL  ++S+ QA++I  LL  L   MK+ GY  K  +
Sbjct: 446 SKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRY 486



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 198/427 (46%), Gaps = 38/427 (8%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+  C     ++ G+ +H   +   +         L+  YA   + + A  + +  ++R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  LI+ Y R+G   EA+ ++ +M    +  D FT  +VL AC     ++ G+ VH+
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 200 CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I +   + ++FV NAL+ MY K G ++ A  +F +M  +D +SWNTMI  Y+   L  E
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  LF +M                           VLE    M+   T L  +     L 
Sbjct: 184 ALSLFGDM---------------------------VLE----MKPDGTTLACI-----LP 207

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ + +L  GKE+HG  +R  +   + V NAL+ MY +C     A +LF M   K +IT
Sbjct: 208 ACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLIT 267

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W  M++GY        +   F EM ++G+EP+ V+  SIL  C+    L  G  F   + 
Sbjct: 268 WTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQ 327

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
                   L  +  +V++ ARSGK+  A K +  +    D   + +L++G  I  + ++A
Sbjct: 328 DECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLA 387

Query: 498 LKLFEEM 504
            K+ E +
Sbjct: 388 EKVAEHV 394



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 4/244 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +A   F  +     S D+   +   ++  C    +L  GK +H       ++
Sbjct: 74  YAREGLSDEAIRLFHEMDREGVSPDIF--TITTVLHACACNGSLENGKDVHNYIRENDMQ 131

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   L+  YA      +A  +     ++  + WN +I  Y ++    EAL ++  M
Sbjct: 132 SNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM 191

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQV 225
               ++ D  T   +L AC  +  +D G+ VH  I     +S   V NALV MY K G  
Sbjct: 192 -VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVP 250

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            +AR LFD +  +D ++W  MI+ Y   G    A   F EM++ G+E + +++ +I   C
Sbjct: 251 VLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYAC 310

Query: 286 LRTG 289
             +G
Sbjct: 311 SHSG 314



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 6/213 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A I+  C  + +L +GK++H   +  G   +  +   LV  Y    +   A  L +  
Sbjct: 201 TLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMI 260

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG- 194
             +  + W ++I+ Y   GF   A+  + +M+   I  D  ++ S+L AC     +D G 
Sbjct: 261 PTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGW 320

Query: 195 RVVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
           R  +   D C+      H A +V +  + G++ +A +    M +E DA  W  ++S    
Sbjct: 321 RFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRI 380

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           +    L ++  +   E++ E     V+  NT A
Sbjct: 381 HHDVKLAEKVAEHVFELEPENTGYYVLLANTYA 413


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 205/616 (33%), Positives = 327/616 (53%), Gaps = 43/616 (6%)

Query: 58  EAFTRIRITAASHDVV---LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           EA    R+  A+   +   L +   ++  C + +     + +H  A+ +GL    V V  
Sbjct: 221 EALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGN 280

Query: 115 -LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            LV  Y        +  + +  + R  + WN +I+ +   G Y +AL V++ M    +R 
Sbjct: 281 ALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRP 340

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           ++ T  S+L   GE+     G  VH   +    E  +F+ N+L+ MY K G   +A  +F
Sbjct: 341 NSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIF 400

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           +KM  R+ VSWN MI+ +A   L  EA +L  +MQ +G   N +T+  +           
Sbjct: 401 NKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNV----------- 449

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                                   L AC+ +G L +GKEIH   +R        V NAL 
Sbjct: 450 ------------------------LPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALT 485

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MYS+C  L  A  +F ++    + ++N ++ GY+  + + ES  LF EM   G+ P+ V
Sbjct: 486 DMYSKCGCLNLAQNVFNISVRDEV-SYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIV 544

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           +   ++  CA +A ++ GKE H  ++R+ +F+ HL + NSL+++Y R G++  A  VF  
Sbjct: 545 SFMGVVSACANLAFIRQGKEIHGLLVRK-LFHTHLFVANSLLDLYTRCGRIDLATKVFYC 603

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           +  +D  ++ ++I GYG++GE   A+ LFE M ++ ++ D V+ VAVLSACSH GL+ +G
Sbjct: 604 IQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKG 663

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           +K F+ M  +  I P   H+ACMVDL GRAGL+ +A ++I  +   P + +W  LLGAC+
Sbjct: 664 RKYFKMMCDL-NIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACR 722

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           IH N  +G WAAE L E +P++ GYY+L++NMYA    WD+  KVR  M+  G +K PGC
Sbjct: 723 IHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGC 782

Query: 653 AWVDAGNVFSPFLVDD 668
           +WV  G++   FLV +
Sbjct: 783 SWVQVGDLVHAFLVGE 798



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 150/528 (28%), Positives = 262/528 (49%), Gaps = 65/528 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C     + +G+++H  A  LG + +  +   L+ FY +  L+ +A  + +  
Sbjct: 139 TYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEM 198

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR--IRGDNFTYPSVLKACGEMMDVDF 193
             R  + WN +I L    GFY EAL  ++ M + +  I+ D  T  SVL  C E  D   
Sbjct: 199 PERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVM 258

Query: 194 GRVVHSCIDACHEWSLF-------VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
            R+VH     C+   +        V NALV +YGK G    ++++FD++ ER+ +SWN +
Sbjct: 259 ARIVH-----CYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAI 313

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           I++++ +G + +A  +F  M +EG+  N +T                             
Sbjct: 314 ITSFSFRGKYMDALDVFRLMIDEGMRPNSVT----------------------------- 344

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
            + S+  V+G      +G  KLG E+HG +++        + N+LI MY++    R A  
Sbjct: 345 -ISSMLPVLG-----ELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIAST 398

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           +F     ++I++WN+M++ +       E+  L R+M   G  PN VT  ++LP CAR+  
Sbjct: 399 IFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGF 458

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L  GKE H  I+R    +  L + N+L +MY++ G +  A++VF++ S RDEV+Y  LI 
Sbjct: 459 LNVGKEIHARIIRVGS-SLDLFVSNALTDMYSKCGCLNLAQNVFNI-SVRDEVSYNILII 516

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           GY    +   +L+LF EM    ++PD V+ + V+SAC++   + +G++       I+G+ 
Sbjct: 517 GYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKE-------IHGLL 569

Query: 547 -PQLEHFACMV-----DLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
             +L H    V     DLY R G ++ A ++   +      A W T++
Sbjct: 570 VRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQ-NKDVASWNTMI 616



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 244/494 (49%), Gaps = 43/494 (8%)

Query: 84  CGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENSNI--RYP 140
           C     L+Q KQ+HA ++  G L ++  L   L+  YASF   +N+  L ++S    R  
Sbjct: 44  CTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSA 103

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
             WN LI      G + +    Y  M    ++ D  TYP VLK C + ++V  GR VH  
Sbjct: 104 FLWNTLIRANSIAGVF-DGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGV 162

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
                 +  +FV N L++ YG  G    A ++FD+M ERD VSWNT+I   +  G ++EA
Sbjct: 163 AFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEA 222

Query: 260 FQLFVEM--QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
              F  M   + G++ +++T  ++   C  T +     ++++R+                
Sbjct: 223 LGFFRVMVAAKPGIQPDLVTVVSVLPVCAETED-----KVMARI---------------- 261

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
               H  ALK+          G  G +  V NAL+ +Y +C   + +  +F    E+++I
Sbjct: 262 ---VHCYALKV----------GLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVI 308

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +WN++++ ++      ++  +FR M   G+ PN VTI+S+LP+   +   + G E H + 
Sbjct: 309 SWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFS 368

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           L+ A+ ++ + + NSL++MYA+SG    A ++F+ M  R+ V++ ++IA +        A
Sbjct: 369 LKMAIESD-VFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEA 427

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           ++L  +M      P++VT   VL AC+  G +  G++   R+  + G    L     + D
Sbjct: 428 VELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRV-GSSLDLFVSNALTD 486

Query: 558 LYGRAGLLNKAKEI 571
           +Y + G LN A+ +
Sbjct: 487 MYSKCGCLNLAQNV 500



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 232/502 (46%), Gaps = 49/502 (9%)

Query: 24  KKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAA--SHDVVLDSFAHII 81
           KK    I+  +++  N + T   F+ RG    A + F R+ I      + V + S   ++
Sbjct: 296 KKVFDEIDERNVISWNAIIT--SFSFRGKYMDALDVF-RLMIDEGMRPNSVTISSMLPVL 352

Query: 82  FCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL 141
              G++     G ++H  ++ + +E +  +   L+  YA       A  +     +R  +
Sbjct: 353 ---GELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIV 409

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-C 200
            WN +I+ + R+    EA+ + +QMQ++    +N T+ +VL AC  +  ++ G+ +H+  
Sbjct: 410 SWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARI 469

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           I       LFV NAL  MY K G +++A+ +F+  + RD VS+N +I  Y+      E+ 
Sbjct: 470 IRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISV-RDEVSYNILIIGYSRTNDSLESL 528

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
           +LF EM+  G+  ++++             F GV+                       AC
Sbjct: 529 RLFSEMRLLGMRPDIVS-------------FMGVVS----------------------AC 553

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           +++  ++ GKEIHG  VR  +  +  V N+L+ +Y+RC  +  A  +F     K + +WN
Sbjct: 554 ANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWN 613

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           +M+ GY      + +  LF  M   GVE + V+  ++L  C+    ++ G+++   +   
Sbjct: 614 TMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDL 673

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALK 499
            +   H   +  +V++  R+G + EA  +   +S   D   + +L+    I G   + L 
Sbjct: 674 NIEPTH-THYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGN--IELG 730

Query: 500 LFEEMNKNQIKPDHVTMVAVLS 521
           L+   +  ++KP H     +LS
Sbjct: 731 LWAAEHLFELKPQHCGYYILLS 752



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 160/366 (43%), Gaps = 41/366 (11%)

Query: 214 ALVSMYGKFGQVDVARRLFDKML--ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
           +L+  Y  FG    +  LF   +   R A  WNT+I A +  G++ + F  +  M   GV
Sbjct: 75  SLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVF-DGFGTYNTMVRAGV 133

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
           + +  T+  +                                   L  CS    ++ G+E
Sbjct: 134 KPDECTYPFV-----------------------------------LKVCSDFVEVRKGRE 158

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +HG A +  +     V N L+  Y  C     A  +F    E+  ++WN+++   +    
Sbjct: 159 VHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGF 218

Query: 392 AEESAFLFREMF--RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
            EE+   FR M   + G++P+ VT+ S+LP+CA   +    +  HCY L+  +   H+ +
Sbjct: 219 YEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKV 278

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N+LV++Y + G    +K VFD +  R+ +++ ++I  +  +G+   AL +F  M    +
Sbjct: 279 GNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGM 338

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +P+ VT+ ++L      GL   G  +    +    I   +     ++D+Y ++G    A 
Sbjct: 339 RPNSVTISSMLPVLGELGLFKLGM-EVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIAS 397

Query: 570 EIITKM 575
            I  KM
Sbjct: 398 TIFNKM 403



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 27/236 (11%)

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
           H++++ K+ +  + +T N+  S +            F    ++   PN      +L LC 
Sbjct: 4   HSHVVNKLPSITTPLTKNTHFSSF------------FSTSLQTSNPPN------LLQLCT 45

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF--DLMSRRDEVT 480
               L   K+ H Y L        + L  SL+  YA  G    +  +F   +   R    
Sbjct: 46  LCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFL 105

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           + +LI    I G        +  M +  +KPD  T   VL  CS     VE +K  E   
Sbjct: 106 WNTLIRANSIAGVFD-GFGTYNTMVRAGVKPDECTYPFVLKVCSD---FVEVRKGREVHG 161

Query: 541 SIYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
             + +    + F    ++  YG  GL   A ++  +MP     + W T++G C +H
Sbjct: 162 VAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVS-WNTVIGLCSLH 216


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 211/668 (31%), Positives = 339/668 (50%), Gaps = 85/668 (12%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP- 142
           C + K L   KQ+HA  +  GL  +P    +L+T  A+ S + +  +  +  + + P P 
Sbjct: 45  CSETKQL---KQIHAQMLRTGLFFDPFSASRLIT-AAALSPFPSLDYAQQVFD-QIPHPN 99

Query: 143 ---WNLLISLYVRDGFYAEALCVYKQMQSRRIR-GDNFTYPSVLKACGEMMDVDFGRVVH 198
              WN LI  Y       ++L ++ +M  +     D FT+P ++KA  E+ ++  G+  H
Sbjct: 100 LYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFH 159

Query: 199 S-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
              I       +F+ N+L+  Y K G++ +  R+F  +  RD VSWN+MI+A+       
Sbjct: 160 GMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAF------- 212

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                                  + GGC         LEL   M TQ    + +  V  L
Sbjct: 213 -----------------------VQGGCPEEA-----LELFQEMETQNVKPNGITMVGVL 244

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+     + G+ +H    R   GE   + NA++ MY++C  +  A  LF    EK I+
Sbjct: 245 SACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIV 304

Query: 378 TWNSMLSGYTHL---DCAE----------------------------ESAFLFREM-FRS 405
           +W +ML GY  +   D A+                            E+  LF E+    
Sbjct: 305 SWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSK 364

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVP 464
             +P+ VT+ S L  CA++  +  G   H YI ++ M  N HL    SL++MY + G + 
Sbjct: 365 TAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLT--TSLIDMYCKCGDLQ 422

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           +A  VF  + R+D   ++++IAG  + G G+ A+ LF +M ++++KP+ VT   +L ACS
Sbjct: 423 KALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACS 482

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV EG+  F +M  +YG+ P ++H+ACMVD+ GRAGLL +A E+I KMP  P +++W
Sbjct: 483 HVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVW 542

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LLGAC IH N  + E A  +L+E  P N G YVL++N+YA  G WD+++ +R  MRD+
Sbjct: 543 GALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDV 602

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKE----EFC 700
           G++K PGC+ ++   +   FLV D S+  A++IY  L  +   ++  GYV  +    +  
Sbjct: 603 GLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLV 662

Query: 701 SEEEIVEE 708
            EE++ E+
Sbjct: 663 EEEDVKEQ 670


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 214/659 (32%), Positives = 337/659 (51%), Gaps = 73/659 (11%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHA-CAIALGLEKNPV 110
           N  + F + TRIR      +V       +I    +   +    +LH+   I   L  +P 
Sbjct: 15  NKFRGFVSLTRIRFDRLKVEVFSKEACEVIL--DQYPGIKTLNKLHSKIVINEHLRIDPT 72

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L  KL+  Y++    + A ++ + S  +  + +N++I  YV +  Y EAL +++ M S  
Sbjct: 73  LAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA 132

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVAR 229
              D++T+P VLKAC  + ++  G  VH  I     + +LF+ NALV+MYGK G +  AR
Sbjct: 133 FNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREAR 192

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           ++ D+M  RD                                   V++WN++  G  ++G
Sbjct: 193 KVLDQMPYRD-----------------------------------VVSWNSMVAGYAQSG 217

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
            F   LE+   M +     D+  T+  L                      CY   ENV+ 
Sbjct: 218 QFDDALEICKEMDSLNLNHDA-GTMASLSPVV------------------CYTSLENVQ- 257

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
                        + + +F+   +K++I+WN M++ Y +     E+  LF +M   G++P
Sbjct: 258 -------------YIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKP 304

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + VTIAS+LP C  ++ L  G+  H YI  +     +LLL N+L++MYA+ G + EA+ V
Sbjct: 305 DAVTIASLLPACGDLSALFLGRRLHKYI-EKGNLQPNLLLENALLDMYAKCGCLEEARDV 363

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           FD M  RD V++TS+++ YG  G+G  A+ LF +M  +   PD +  V+VLSACSH+GL+
Sbjct: 364 FDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLL 423

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            +G+  F  MT  YGI P++EHFACMVDL+GRAG + +A   I +MP  P   +W  LL 
Sbjct: 424 DQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLS 483

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++H    IG  AA+ L +  P+ SGYYVL++N+YA  G W  +  VR  M+ +G++K+
Sbjct: 484 ACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKV 543

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           PG + V+       FL  D  + QA+ IY  L  L   MK+ GY+ + E    +  VE+
Sbjct: 544 PGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVED 602


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 209/644 (32%), Positives = 330/644 (51%), Gaps = 78/644 (12%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTF-----YASFSLYNNACFLVENSNIRYPLP 142
           +++ Q +Q+H  AI  GL  NPVL  +++TF     Y  F         +   N+     
Sbjct: 29  ESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNL---FI 85

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN +I  Y R  F    + +Y +M  R ++ D +T+P + K     + +++GR +H   +
Sbjct: 86  WNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVL 145

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               ++++FVH ALV MY   GQ+D AR +FD   + D                      
Sbjct: 146 KHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD---------------------- 183

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                        VITWN I     + G F+    L   M  ++    +V  V+ L ACS
Sbjct: 184 -------------VITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 230

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
            +  L+ GK++H S V+ C  E   V  NA+I MY+ C ++  A  +F+    + II+W 
Sbjct: 231 KLKDLRTGKKVH-SYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWT 289

Query: 381 SMLSGYTHL---DCA----------------------------EESAFLFREMFRSGVEP 409
           +++SG+T+L   D A                            +E+  LFR M  + V+P
Sbjct: 290 TIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKP 349

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           +  T+ S+L  CA +  L+ G+    YI R  + N+ L + N+L++MY + G V +A+S+
Sbjct: 350 DEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKND-LFVRNALIDMYFKCGDVDKAESI 408

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F  MS+RD+ T+T++I G  + G G  AL +F  M K  I PD +T + VLSAC+H+GLV
Sbjct: 409 FREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 468

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            +G+K F RMTS +GI P + H+ C+VDL  RAG L +A E+I  MP    S +W  LL 
Sbjct: 469 DKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 528

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
            C+++R + + E   +++LE  P+N   YVL+ N+YAA   W+ L ++R  M D G++K 
Sbjct: 529 GCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKT 588

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           PGC+ ++       F+  D S+ Q + I   L  +T+ +K AGY
Sbjct: 589 PGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGY 632


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 218/664 (32%), Positives = 342/664 (51%), Gaps = 84/664 (12%)

Query: 50  RGNLSKAFEAFTRIRITAASHD---VVLDSFAHIIFCCGKVKALAQGKQLHA-CAIALGL 105
           RG +S     F R+++   S +   V+LD +  I       K L    +LH+   I   L
Sbjct: 18  RGIVSSTRIRFDRLKVEVFSKEACEVILDQYPGI-------KTL---NKLHSKIVINEHL 67

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             +P L  KL+  Y++    + A ++ + S  +  + +N++I  YV +  Y EAL +++ 
Sbjct: 68  RIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQV 127

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQ 224
           M S     D++T+P VLKAC  + ++  G  VH  I     + +LF+ NALV+MYGK G 
Sbjct: 128 MLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGC 187

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  AR++ D+M  RD                                   V++WN++  G
Sbjct: 188 LREARKVLDQMPYRD-----------------------------------VVSWNSMVAG 212

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
             ++G F   LE+   M +     D+  T+  L                      CY   
Sbjct: 213 YAQSGQFDDALEICKEMDSLNLNHDA-GTMASLSPVV------------------CYTSL 253

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           ENV+              + + +F+   +K++I+WN M++ Y +     E+  LF +M  
Sbjct: 254 ENVQ--------------YIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEE 299

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G++P+ VTIAS+LP C  ++ L  G+  H YI  +     +LLL N+L++MYA+ G + 
Sbjct: 300 CGMKPDAVTIASLLPACGDLSALFLGRRLHKYI-EKGNLRPNLLLENALLDMYAKCGCLE 358

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           EA+ VFD M  RD V++TS+++ YG  G+G  A+ LF +M  +   PD +  V+VLSACS
Sbjct: 359 EARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACS 418

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H+GL+ +G+  F  MT  YGI P++EHFACMVDL+GRAG + +A   I +MP  P   +W
Sbjct: 419 HTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVW 478

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LL AC++H    IG  AA+ L +  P+ SGYYVL++N+YA  G W  +  VR  M+ +
Sbjct: 479 GALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKI 538

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
           G++K+PG + V+       FL  D  + QA+ IY  L  L   MK+ GY+ + E    + 
Sbjct: 539 GIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDV 598

Query: 705 IVEE 708
            VE+
Sbjct: 599 EVED 602


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 213/638 (33%), Positives = 339/638 (53%), Gaps = 49/638 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  CG    L  G+++H  A  LG + N  +   L+  Y+ F     A  L ++ 
Sbjct: 220 TFPPVLKACG---TLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM 276

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN +IS  +++G  A+AL V  +M+   I+ +  T  S+L  C ++ D+    
Sbjct: 277 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM 336

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ++H   I    E+ LFV NAL++MY KFG ++ AR+ F +M   D VSWN++I+AY    
Sbjct: 337 LIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQND 396

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A   FV+MQ  G + +++T                              L S+A++
Sbjct: 397 DPVTAHGFFVKMQLNGFQPDLLT------------------------------LVSLASI 426

Query: 315 IGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           +     +     K  + +HG  +R G   E   + NA++ MY++   L  A+ +F++   
Sbjct: 427 V-----AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILV 481

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKE 432
           K +I+WN++++GY     A E+  +++ M     + PN  T  SILP  A V  LQ G  
Sbjct: 482 KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMR 541

Query: 433 FHCYILRRAMFNEHL--LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
            H  +++    N HL   +   L+++Y + G++ +A S+F  + +   VT+ ++I+ +GI
Sbjct: 542 IHGRVIKT---NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI 598

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G     LKLF EM    +KPDHVT V++LSACSHSG V EG+  F R+   YGI P L+
Sbjct: 599 HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLK 657

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL GRAG L  A   I  MP  P +++W  LLGAC+IH N  +G++A+++L E 
Sbjct: 658 HYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEV 717

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
             +N GYYVL++N+YA  G W+ + KVR+  R+ G++K PG + ++       F   + S
Sbjct: 718 DSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQS 777

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           + + +EIY  L  LT  MK  GY+    F  ++  VEE
Sbjct: 778 HPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQD--VEE 813



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/509 (28%), Positives = 256/509 (50%), Gaps = 51/509 (10%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
            K LHA  +  G  ++  +  +LV  YA+    + +    +    +    WN +IS YV 
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 153 DGFYAEAL-CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
           +G + EA+ C Y+ +    IR D +T+P VLKACG ++D   GR +H        +W++F
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVF 251

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V  +L+ MY +FG   +AR LFD M  RD  SWN MIS     G   +A  +  EM+ EG
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           +++N +T  +I   C + G+                   S A +I      H+  +K G 
Sbjct: 312 IKMNFVTVVSILPVCPQLGDI------------------STAMLI------HLYVIKHGL 347

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           E               V NALI MY++  +L  A   F+      +++WNS+++ Y   D
Sbjct: 348 EFD-----------LFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQND 396

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
               +   F +M  +G +P+ +T+ S+  + A+  + ++ +  H +I+RR    E +++ 
Sbjct: 397 DPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG 456

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQI 509
           N++V+MYA+ G +  A  VF+++  +D +++ +LI GY   G    A+++++ M +  +I
Sbjct: 457 NAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 516

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERM--TSIYGIFPQLEHF--ACMVDLYGRAGLL 565
            P+  T V++L A +H G + +G +   R+  T+++     L+ F   C++D+YG+ G L
Sbjct: 517 IPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLH-----LDVFVATCLIDVYGKCGRL 571

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIH 594
             A  +  ++P   +S  W  ++    IH
Sbjct: 572 VDAMSLFYQVP-QESSVTWNAIISCHGIH 599


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 209/644 (32%), Positives = 330/644 (51%), Gaps = 78/644 (12%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTF-----YASFSLYNNACFLVENSNIRYPLP 142
           +++ Q +Q+H  AI  GL  NPVL  +++TF     Y  F         +   N+     
Sbjct: 50  ESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNL---FI 106

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN +I  Y R  F    + +Y +M  R ++ D +T+P + K     + +++GR +H   +
Sbjct: 107 WNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVL 166

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               ++++FVH ALV MY   GQ+D AR +FD   + D                      
Sbjct: 167 KHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD---------------------- 204

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                        VITWN I     + G F+    L   M  ++    +V  V+ L ACS
Sbjct: 205 -------------VITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 251

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
            +  L+ GK++H S V+ C  E   V  NA+I MY+ C ++  A  +F+    + II+W 
Sbjct: 252 KLKDLRTGKKVH-SYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWT 310

Query: 381 SMLSGYTHL---DCA----------------------------EESAFLFREMFRSGVEP 409
           +++SG+T+L   D A                            +E+  LFR M  + V+P
Sbjct: 311 TIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKP 370

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           +  T+ S+L  CA +  L+ G+    YI R  + N+ L + N+L++MY + G V +A+S+
Sbjct: 371 DEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKND-LFVRNALIDMYFKCGDVDKAESI 429

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F  MS+RD+ T+T++I G  + G G  AL +F  M K  I PD +T + VLSAC+H+GLV
Sbjct: 430 FREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 489

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            +G+K F RMTS +GI P + H+ C+VDL  RAG L +A E+I  MP    S +W  LL 
Sbjct: 490 DKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 549

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
            C+++R + + E   +++LE  P+N   YVL+ N+YAA   W+ L ++R  M D G++K 
Sbjct: 550 GCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKX 609

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           PGC+ ++       F+  D S+ Q + I   L  +T+ +K AGY
Sbjct: 610 PGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGY 653


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 330/623 (52%), Gaps = 70/623 (11%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           +L SF  +     +   +   K+LH     L   +NP L  KL+  YA+         + 
Sbjct: 17  ILTSFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVF 76

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +  + R  + +N++I  YV +  Y + L V+++M +   R DN+TYP VLKAC    ++ 
Sbjct: 77  DEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLR 136

Query: 193 FGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
           +G ++H   +    +++LFV N L++MYGK G +  ARR+FD+M+               
Sbjct: 137 YGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMI--------------- 181

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
               WK+                V++WN++  G      F   LE+   M          
Sbjct: 182 ----WKD----------------VVSWNSMVAGYAHNMRFDDALEICREM---------- 211

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                              E +G    GC     ++  A+    S  +++ +   +F   
Sbjct: 212 -------------------EDYGQKPDGC--TMASLMPAVANTSS--ENVLYVEKIFVNL 248

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             K++I+WN M+  Y       ++  L+ +M +  VEP+ +T AS+LP C  ++ L  G+
Sbjct: 249 ERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGR 308

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
             H Y+ ++ +   +LLL NSL++MYAR G + +AK VFD M  RD  ++TSLI+ YG+ 
Sbjct: 309 RIHEYVEKKKLC-PNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMT 367

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G+G  A+ LF EM  +   PD +  VA+LSACSHSGL+ EG+  F++MT  Y I P++EH
Sbjct: 368 GQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEH 427

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +AC+VDL GRAG +++A  II +MP  P   +WATLL +C++  N  IG  AA+ LL+  
Sbjct: 428 YACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLA 487

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           PE SGYYVL++N+YA  G W ++ ++R+ M+   +RK PG + V+  N    FL  DTS+
Sbjct: 488 PEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSH 547

Query: 672 VQAQEIYPLLGGLTELMKDAGYV 694
            Q++EIY  LG L   MK+ GYV
Sbjct: 548 PQSKEIYEELGVLVAKMKELGYV 570


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 201/611 (32%), Positives = 333/611 (54%), Gaps = 38/611 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+  C  ++ L +G+Q+H   I  G +++  +   L++ Y+       A  +  N   + 
Sbjct: 185 ILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKD 244

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
               N +IS Y + G   +A+ V+  +    +  +++T+ +V+ AC   +DV+  RV+H 
Sbjct: 245 VRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHG 304

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            CI       + V NA+VS+Y K G ++ A + F  M ER+ VSW  ++S Y   G  K+
Sbjct: 305 MCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKK 364

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A + F ++ E GV  +   + T+  GC    N                            
Sbjct: 365 ALEGFSQILELGVGFDSCCFATLLDGCSECKN---------------------------- 396

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
                  L LG +IHG  V+  Y    +V  ALI +Y++C+ LR A ++F    +K+I++
Sbjct: 397 -------LGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVS 449

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           +N++LSGY   D  E++  LF ++  + ++P+ VT A +L L A  A L  GK  H YI+
Sbjct: 450 FNAILSGYIGAD-EEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYII 508

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   F  +  + N+++ MYA+ G + +A  +F  M+  D +++ ++I+ Y + G+GR AL
Sbjct: 509 KTG-FEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKAL 567

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LFEEM K +  PD +T+++VL ACS+SGL+ EG   F  M S YGI P++EHFACMVDL
Sbjct: 568 ILFEEMKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDL 627

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L++A   I + P++ +  +W TL+  C++H +   G+ A++ LL+  PE +G Y
Sbjct: 628 LGRAGYLSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSY 687

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           +L++N+YA  G  ++ A+VRT M DL V K  G +W++  N    F+  D  + +++EIY
Sbjct: 688 ILVSNLYAGGGMLNEAARVRTVMNDLKVSKEAGSSWIEIDNKVHQFVASDKDHPESKEIY 747

Query: 679 PLLGGLTELMK 689
             L  L   MK
Sbjct: 748 AKLDLLKSEMK 758



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/506 (21%), Positives = 224/506 (44%), Gaps = 40/506 (7%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L  G+ +HA    LG + +      LV  Y  F+   +A  + +   +R  + W  LI  
Sbjct: 94  LMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKG 153

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           +++         + ++M       +  T   +L+AC  + ++  G  +H   I    +  
Sbjct: 154 HLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDED 213

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +FV  +L+SMY + G +  A +++  +  +D    N MIS Y   G  ++A  +F+ +  
Sbjct: 214 VFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLG 273

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
            G+E N  T+  +   C   G+    +E+L                              
Sbjct: 274 SGLEPNDYTFTNVISAC--NGDID--VEVL------------------------------ 299

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
            + +HG  ++   G+  +V NA++++Y +   L  A   F    E+++++W ++LSGY  
Sbjct: 300 -RVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVK 358

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               +++   F ++   GV  +    A++L  C+   NL  G + H ++++    ++ + 
Sbjct: 359 NGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHD-VS 417

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           +  +L+++YA+  K+  A+ VF  +  ++ V++ ++++GY I  +   A+ LF ++    
Sbjct: 418 VGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGY-IGADEEDAMALFSQLRLAD 476

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           IKPD VT   +LS  +    +V+G K         G          ++ +Y + G +  A
Sbjct: 477 IKPDSVTFARLLSLSADQACLVKG-KCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDA 535

Query: 569 KEIITKMPYTPTSAMWATLLGACQIH 594
            ++   M Y   S  W  ++ A  +H
Sbjct: 536 CQLFYSMNYL-DSISWNAVISAYALH 560



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 201/453 (44%), Gaps = 52/453 (11%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           +P +L+      D+  G+ +H+ +    ++   F  N LV++YGKF ++  A+ +FD+ML
Sbjct: 81  WPQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEML 140

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            R                                   N ITW T+  G L+  + + V  
Sbjct: 141 VR-----------------------------------NTITWTTLIKGHLQVNDVESVFR 165

Query: 297 LLSRMR-TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           +   M    E + +   +VI L AC  +  L  G++IHG  ++  + E   V  +LI+MY
Sbjct: 166 IAREMYWVGEEFNEHTCSVI-LQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMY 224

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           SRC DL  A  ++   A K +   N M+S Y    C E++  +F  +  SG+EPN  T  
Sbjct: 225 SRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFT 284

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           +++  C    +++  +  H   ++    +E + + N++V +Y + G + EA+  F  M  
Sbjct: 285 NVISACNGDIDVEVLRVLHGMCIKCGCGDE-ISVGNAIVSVYVKHGMLEEAEKSFCGMGE 343

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           R+ V++T+L++GY   G G+ AL+ F ++ +  +  D      +L  CS         K 
Sbjct: 344 RNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSEC-------KN 396

Query: 536 FERMTSIYGIFPQLEHF------ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
                 I+G   +L +         ++DLY +   L  A+ +   +      +  A L G
Sbjct: 397 LGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSG 456

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
                    +  ++  +L + +P++  +  L++
Sbjct: 457 YIGADEEDAMALFSQLRLADIKPDSVTFARLLS 489



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 125/262 (47%), Gaps = 4/262 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +   GN  KA E F++I       D     FA ++  C + K L  G Q+H   + L
Sbjct: 353 LSGYVKNGNGKKALEGFSQILELGVGFDSC--CFATLLDGCSECKNLGLGLQIHGFVVKL 410

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   +  +   L+  YA      +A  +  +   +  + +N ++S Y+      +A+ ++
Sbjct: 411 GYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYI-GADEEDAMALF 469

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            Q++   I+ D+ T+  +L    +   +  G+ +H+  I    E +  V NA+++MY K 
Sbjct: 470 SQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKC 529

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +  A +LF  M   D++SWN +ISAYA  G  ++A  LF EM++E    + IT  ++ 
Sbjct: 530 GSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEMKKEEFVPDEITILSVL 589

Query: 283 GGCLRTGNFKGVLELLSRMRTQ 304
             C  +G  +    L + M ++
Sbjct: 590 QACSYSGLLEEGFCLFNDMESK 611


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1028

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 216/655 (32%), Positives = 338/655 (51%), Gaps = 43/655 (6%)

Query: 44   LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
            ++ +A  G   K  E F  ++  ++ +++   +F  ++  C     L  G Q H+  I  
Sbjct: 400  IRGYAHNGESHKVMELFMDMK--SSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKK 457

Query: 104  GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
             L KN  +   LV  YA      +A  + E+   R  + WN +I  YV+D   +EA  ++
Sbjct: 458  KLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLF 517

Query: 164  KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
             +M S  I  D     S LKAC  +  +  G+ VH     C  +  L   ++L+ MY K 
Sbjct: 518  MRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKC 577

Query: 223  GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            G ++ AR++F  M E   VS N +I+ Y+   L +EA  LF EM  +GV  + IT+ TI 
Sbjct: 578  GIIEDARKVFSSMPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATI- 635

Query: 283  GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCY 341
                                              + AC    +L LG + HG  ++ G  
Sbjct: 636  ----------------------------------VEACHKPESLTLGTQFHGQIIKWGFS 661

Query: 342  GEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
             E E +  +L+ +Y   + +  A  LF ++++ KSI+ W  M+SG++     EE+   ++
Sbjct: 662  SEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYK 721

Query: 401  EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            EM   G  P+  T  ++L +C+ +++L+ G+  H  I   A  +   L  N+L++MYA+ 
Sbjct: 722  EMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLA-HDLDELTSNTLIDMYAKC 780

Query: 461  GKVPEAKSVFDLMSRRDEV-TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  +  VFD M RR  V ++ SLI GY   G    ALK+F+ M ++ I PD +T + V
Sbjct: 781  GDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGV 840

Query: 520  LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
            L+ACSH+G V +G+K FE M   YGI  +++H ACMVDL GR G L +A + I      P
Sbjct: 841  LTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKP 900

Query: 580  TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
             + +W++LLGAC+IH +   GE AAE+L+E  P+NS  YVL++N+YA+ G W++   +R 
Sbjct: 901  DARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALRK 960

Query: 640  CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             MRD GV+K+PG +W+D G     F   D S+    +I   L  L +LMKD   V
Sbjct: 961  AMRDRGVKKVPGYSWIDVGQRRHIFAAGDQSHSDIGKIEMFLEDLYDLMKDDAVV 1015



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 155/547 (28%), Positives = 256/547 (46%), Gaps = 53/547 (9%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           RG    A E F  +R ++        +   ++   G V  L  G  +HA AI LGL  N 
Sbjct: 305 RGCEIVAIEYFLNMRKSSVKS--TRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNI 362

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            +   LV+ Y+       A  + E    R  + WN +I  Y  +G   + + ++  M+S 
Sbjct: 363 YVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSS 422

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
               D+FT+ S+L  C    D++ G   HS  I      +LFV NALV MY K G ++ A
Sbjct: 423 GYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDA 482

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           R++F+ M +RD VSWNT+I  Y       EAF LF+ M   G+  +        G CL +
Sbjct: 483 RQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSD--------GACLAS 534

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                                       L AC++V  L  GK++H  +V+       +  
Sbjct: 535 ---------------------------TLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTG 567

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           ++LI MYS+C  +  A  +F    E S+++ N++++GY+  +  EE+  LF+EM   GV 
Sbjct: 568 SSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTKGVN 626

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+ +T A+I+  C +  +L  G +FH  I++    +E   L  SL+ +Y  S ++ EA +
Sbjct: 627 PSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACA 686

Query: 469 VF-DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           +F +L S +  V +T +++G+   G    ALK ++EM  +   PD  T V VL  CS   
Sbjct: 687 LFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLS 746

Query: 528 LVVEGQKQFERMTSIYGIFPQLEH------FACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
            + EG+       +I+ +   L H         ++D+Y + G +  + ++  +M      
Sbjct: 747 SLREGR-------AIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNV 799

Query: 582 AMWATLL 588
             W +L+
Sbjct: 800 VSWNSLI 806



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 151/544 (27%), Positives = 261/544 (47%), Gaps = 51/544 (9%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL--YNNACFLVENSNIRYPLPWNLL 146
           AL  GK +H+ ++ LG++    L   +V  YA  +   Y    F   NS  +    WN +
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQF---NSLEKDVTAWNSM 131

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACH 205
           +S+Y   G   + L  +  +    I  + FT+  VL       +V+FGR +H S I    
Sbjct: 132 LSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGL 191

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           E + +   ALV MY K  ++  A+R+FD +++ + V W  + S Y   GL +EA  +F  
Sbjct: 192 ERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFER 251

Query: 266 MQEEG--------VEV-----------------------NVITWNTIAGGCLRTGNFKGV 294
           M+ EG        V V                       +V+ WN +  G  + G     
Sbjct: 252 MRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVA 311

Query: 295 LELLSRMR-----TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
           +E    MR     +  + L SV + IG+     V  L LG  +H  A++        V +
Sbjct: 312 IEYFLNMRKSSVKSTRSTLGSVLSAIGI-----VANLDLGLVVHAEAIKLGLASNIYVGS 366

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           +L++MYS+C+ +  A  +F+   E++ + WN+M+ GY H   + +   LF +M  SG   
Sbjct: 367 SLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNI 426

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           +  T  S+L  CA   +L+ G +FH  I+++ +  ++L + N+LV+MYA+ G + +A+ +
Sbjct: 427 DDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKL-TKNLFVGNALVDMYAKCGALEDARQI 485

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRV-ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           F+ M  RD V++ ++I GY +Q E    A  LF  MN   I  D   + + L AC++   
Sbjct: 486 FEHMCDRDNVSWNTIIGGY-VQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHG 544

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           + +G KQ   ++   G+   L   + ++D+Y + G++  A+++ + MP     +M A + 
Sbjct: 545 LYQG-KQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIA 603

Query: 589 GACQ 592
           G  Q
Sbjct: 604 GYSQ 607



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/477 (24%), Positives = 212/477 (44%), Gaps = 43/477 (9%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN++IS + + G    A+  +  M+   ++    T  SVL A G + ++D G VVH+ 
Sbjct: 293 VAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAE 352

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            I      +++V ++LVSMY K  +++ A ++F+ + ER                     
Sbjct: 353 AIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEER--------------------- 391

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
                         N + WN +  G    G    V+EL   M++    +D       L  
Sbjct: 392 --------------NDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+    L++G + H   ++    +   V NAL+ MY++C  L  A  +F+   ++  ++W
Sbjct: 438 CAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSW 497

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+++ GY   +   E+  LF  M   G+  +   +AS L  C  V  L  GK+ HC  ++
Sbjct: 498 NTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVK 557

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             + +  L   +SL++MY++ G + +A+ VF  M     V+  +LIAGY  Q     A+ 
Sbjct: 558 CGL-DRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYS-QNNLEEAVV 615

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDL 558
           LF+EM    + P  +T   ++ AC     +  G  QF      +G   + E+    ++ L
Sbjct: 616 LFQEMLTKGVNPSEITFATIVEACHKPESLTLG-TQFHGQIIKWGFSSEGEYLGISLLGL 674

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           Y  +  + +A  + +++    +  +W  ++     H   G  E A +   E R + +
Sbjct: 675 YMNSRRMAEACALFSELSSPKSIVLWTGMMSG---HSQNGFYEEALKFYKEMRHDGA 728



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 135/279 (48%), Gaps = 10/279 (3%)

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           AL++GK +H  ++         + NA++ +Y++C  + +A   F  + EK +  WNSMLS
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFN-SLEKDVTAWNSMLS 133

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
            Y+ +    +    F  +F + + PN  T + +L   AR  N++ G++ HC +++  +  
Sbjct: 134 MYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGL-E 192

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            +     +LV+MYA+  ++ +A+ VFD +   + V +T L +GY   G    A+ +FE M
Sbjct: 193 RNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERM 252

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
                +PDH+  V V++     G + + +  F  M S     P +  +  M+  +G+ G 
Sbjct: 253 RGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPS-----PDVVAWNVMISGHGKRGC 307

Query: 565 LNKAKEIITKMPYTPTSAMWATL---LGACQIHRNTGIG 600
              A E    M  +   +  +TL   L A  I  N  +G
Sbjct: 308 EIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLG 346


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 301/549 (54%), Gaps = 17/549 (3%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           +N +++   + G   +AL     M +     + +++ S L AC        G  VH+ + 
Sbjct: 115 YNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVT 174

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            + H   +++  ALV MY K  + + A+++FD M ER+ VSWN++I+ Y   G   EA  
Sbjct: 175 KSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALA 234

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM----RTQETYLDSVATVIGL 317
           LFV M ++G   + +T  ++   C      +   ++ +RM    R +E  + + A V   
Sbjct: 235 LFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMY 294

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
             C      K        A+R    E      ++IT Y++  ++  A  +F    EK+++
Sbjct: 295 AKCGRTWEAKC--VFDRMAIRSVVSE-----TSMITGYAKSANVGDAQAVFLQMVEKNVV 347

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            WN +++ Y H    EE+  LF  + R  V P + T  ++L  CA +ANLQ G++ H ++
Sbjct: 348 AWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHV 407

Query: 438 LRRAM-FNE----HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
           L+    F+      + + NSLV+MY ++G + +   VF+ M+ RD V++ ++I GY   G
Sbjct: 408 LKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNG 467

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
             + AL LFE M  +  +PD VTM+ VLSAC HSGLV EG++ F+ MT  +GI P  +H+
Sbjct: 468 RAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHY 527

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CM+DL GRAG L + +E+I  MP  P + +WA+LLGAC++H+N  +GEWAA KL E  P
Sbjct: 528 TCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDP 587

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           +NSG YVL++NMYA  G W  + +VR  M+  GV K PGC+W++ G   + FL  D  + 
Sbjct: 588 DNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDNIHP 647

Query: 673 QAQEIYPLL 681
              EI+  L
Sbjct: 648 CRNEIHDTL 656



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 201/422 (47%), Gaps = 40/422 (9%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+ N L+S Y + G +  ARR+FD M  R+  S+N ++SA A  G   +A  LF  + + 
Sbjct: 51  FLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDP 110

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
               +  ++N +     + G     L  L+ M   +  L++ +    L AC+   A + G
Sbjct: 111 ----DQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTG 166

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +++H    +  +G    +  AL+ MY++C+    A  +F    E++I++WNS+++ Y   
Sbjct: 167 EQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQN 226

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              +E+  LF  M + G  P+ VT+AS++  CA +A  + G++ H  +++   F E ++L
Sbjct: 227 GPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVL 286

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG----------------- 492
            N+LV+MYA+ G+  EAK VFD M+ R  V+ TS+I GY                     
Sbjct: 287 NNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNV 346

Query: 493 --------------EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
                         E   AL+LF  + +  + P H T   VL+AC++   +  GQ+    
Sbjct: 347 VAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVH 406

Query: 539 MTS---IYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           +      +   P+ + F    +VD+Y + G ++   ++  +M      +  A ++G  Q 
Sbjct: 407 VLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQN 466

Query: 594 HR 595
            R
Sbjct: 467 GR 468



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 219/482 (45%), Gaps = 39/482 (8%)

Query: 63  IRITAASH--DVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTF 118
           +R  AA H  D VL+  SFA  +  C   KA   G+Q+HA         +  +   LV  
Sbjct: 132 LRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDM 191

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           YA       A  + +    R  + WN LI+ Y ++G   EAL ++ +M       D  T 
Sbjct: 192 YAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTL 251

Query: 179 PSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKML 236
            SV+ AC  +     GR VH+ +     +   + ++NALV MY K G+   A+ +FD+M 
Sbjct: 252 ASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMA 311

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            R  VS  +MI+ YA      +A  +F++M    VE NV+ WN +          +  L 
Sbjct: 312 IRSVVSETSMITGYAKSANVGDAQAVFLQM----VEKNVVAWNVLIATYAHNSEEEEALR 367

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY----GEYEN--VRNA 350
           L  R++ +  +         L AC+++  L+LG++ H   ++  +    G   +  V N+
Sbjct: 368 LFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNS 427

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           L+ MY +   +     +F+  A +  ++WN+M+ GY     A+++  LF  M  S   P+
Sbjct: 428 LVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPD 487

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPE 465
            VT+  +L  C     ++ G+ +      ++M  +H ++     +  ++++  R+G + E
Sbjct: 488 SVTMIGVLSACGHSGLVKEGRRYF-----QSMTEDHGIIPTRDHYTCMIDLLGRAGHLKE 542

Query: 466 AKSVFDLMSRR-DEVTYTSLIAGYGIQ-----GEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            + + + M    D V + SL+    +      GE   A KLFE      + PD+     +
Sbjct: 543 VEELIENMPMEPDAVLWASLLGACRLHKNIDMGEW-AAGKLFE------LDPDNSGPYVL 595

Query: 520 LS 521
           LS
Sbjct: 596 LS 597



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F     L N+L+  YAR G + +A+ VFD M  R+  +Y +L++     G    AL LF 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSG 527
            +      PD  +  AV++A +  G
Sbjct: 106 AIP----DPDQCSYNAVVAALAQHG 126


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 202/640 (31%), Positives = 332/640 (51%), Gaps = 39/640 (6%)

Query: 56  AFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           A E F R+ I     D  +   A  +  C  +  L  G+Q+H  A     E +  ++  L
Sbjct: 205 ALELFDRMGIEGVRPDRFV--LASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVL 262

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           +  Y   S  + A  L +    R  + W  +IS Y+++ F AEA+ ++  M     + D 
Sbjct: 263 IDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDG 322

Query: 176 FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
           F   S+L +CG +  +  GR +H+  I A  E   +V NAL+ MY K   +  AR +FD 
Sbjct: 323 FACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDA 382

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           + E DA+S+N MI  Y+      EA  +F  M+   +  +++T+ ++             
Sbjct: 383 LAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSL------------- 429

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
                                 LG  S   A++L K+IHG  ++          +ALI +
Sbjct: 430 ----------------------LGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDV 467

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           YS+C  +  A  +F M   K ++ WNSM+ G+   +  EE+  LF ++  SG+ PN  T 
Sbjct: 468 YSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTF 527

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
            +++ + + +A++ HG++FH +I++  + N+  +  N+L++MYA+ G + E + +F+   
Sbjct: 528 VALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVS-NALIDMYAKCGFIKEGRMLFESTC 586

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
             D + + S+I  Y   G    AL++F  M + +++P++VT V VLSAC+H+G V EG  
Sbjct: 587 GEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLN 646

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            F  M S Y I P +EH+A +V+L+GR+G L+ AKE I +MP  P +A+W +LL AC + 
Sbjct: 647 HFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLF 706

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            N  IG +AAE  L   P +SG YVL++N+YA+ G W  +  +R  M   G  K  GC+W
Sbjct: 707 GNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSW 766

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           ++       F+V    + +A+ IY +L  LT L+K+ GYV
Sbjct: 767 IEVTKEVHTFIVRGREHPEAELIYSVLDELTSLIKNLGYV 806



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 231/518 (44%), Gaps = 43/518 (8%)

Query: 76  SFAHIIFCC---GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           S A ++  C   G  +       +HA A   G   +  L   L+  Y++     +A  L 
Sbjct: 17  SLARVLLSCLPTGGDRLRRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLF 76

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDV 191
           +    R  + W  +IS+Y + G    A+ ++   Q       N F   SVL+AC +   V
Sbjct: 77  DRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAV 136

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G  VH   +    + +++V  AL+++Y K G +D A  +F  +  R  V         
Sbjct: 137 SLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPV--------- 187

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                                     TWNT+  G  + G     LEL  RM  +    D 
Sbjct: 188 --------------------------TWNTVITGYAQIGCGGVALELFDRMGIEGVRPDR 221

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 + ACS +G L+ G++IHG A R       +V N LI +Y +C  L  A  LF  
Sbjct: 222 FVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDC 281

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              +++++W +M+SGY       E+  +F  M ++G +P+     SIL  C  +A +  G
Sbjct: 282 MEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQG 341

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           ++ H +++ +A       + N+L++MYA+   + EA++VFD ++  D ++Y ++I GY  
Sbjct: 342 RQIHAHVI-KADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSK 400

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
             +   A+ +F+ M    ++P  +T V++L   S S L +E  KQ   +    G    L 
Sbjct: 401 NRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSS-SQLAIELSKQIHGLIIKSGTSLDLY 459

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
             + ++D+Y +  L+N AK +   + Y     +W +++
Sbjct: 460 AASALIDVYSKCSLVNDAKTVFNMLHYKDM-VIWNSMI 496



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ ++   +L++A   F R+R  +    ++  +F  ++       A+   KQ+H   I  
Sbjct: 395 IEGYSKNRDLAEAVNIFQRMRFFSLRPSLL--TFVSLLGVSSSQLAIELSKQIHGLIIKS 452

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   +      L+  Y+  SL N+A  +    + +  + WN +I  + ++    EA+ ++
Sbjct: 453 GTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLF 512

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            Q+    +  + FT+ +++     +  +  G+  H+  I A  +    V NAL+ MY K 
Sbjct: 513 NQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKC 572

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +   R LF+     D + WN+MI+ YA  G  +EA Q+F  M E  VE N +T+  + 
Sbjct: 573 GFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVL 632

Query: 283 GGCLRTGNFKGVLELLSRMRTQ---ETYLDSVATVIGLGACSHVGALKLGKE 331
             C   G     L   + M++    E  ++  A+V+ L   S  G L   KE
Sbjct: 633 SACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRS--GKLHAAKE 682


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 204/587 (34%), Positives = 324/587 (55%), Gaps = 28/587 (4%)

Query: 108 NPVLV--PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           NP L     ++  Y+ +     A  L      R  + WN +IS+  + GF AE L  + +
Sbjct: 177 NPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLE 236

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKF 222
           M ++  R ++ TY SVL AC  + D+++G  +H+ I   + C +  ++    L+ MY K 
Sbjct: 237 MWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLD--VYAGCGLIDMYAKC 294

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+++ AR++FD + E +AVSW ++I   A  G  +EA  LF +M+E  V  +  T  T+ 
Sbjct: 295 GRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVL 354

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
           G CL   +     +L +   T+   LDS   V       +     + K  H         
Sbjct: 355 GVCLSQKDISIGEQLHAHTITRG--LDSSVPVANALVTMYAKCGDVWKANHAF------- 405

Query: 343 EYENVRN-----ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           E   +R+     A+IT +S+  D+  A   F    E+++I+WNSML+ Y      EE   
Sbjct: 406 ELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLK 465

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM---FNEHLLLWNSLV 454
           ++ +M R GV+ +++T ++ +  CA +A L  G +    IL +A    F+ ++ + NS+V
Sbjct: 466 VYIQMLREGVKTDWITFSTSISACADLAVLILGNQ----ILAQAEKLGFSSNVSVANSVV 521

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
            MY+R G++ EA+ +F  +  ++ V++ +++AGY   G+GR  +++FE+M      PD +
Sbjct: 522 TMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQI 581

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           + V+VLS CSHSG V EGQ  F  MT  +GI P  EHF CMVDL GRAG L +AK +I +
Sbjct: 582 SYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQ 641

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           MP+ P +A+W  LL AC+IH NT + E A + LLE   E  G Y L+AN+Y+ +G    +
Sbjct: 642 MPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGV 701

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
             VR  MRD GVRK PGC+W++  N    F VDDT++ Q ++++ +L
Sbjct: 702 TNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDVHRML 748



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 208/427 (48%), Gaps = 12/427 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A ++  C  +  L  G  LHA  + +    +      L+  YA      +A  + +  
Sbjct: 248 TYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGL 307

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + W  LI    + GF  EAL ++ QM+   +  D FT  +VL  C    D+  G 
Sbjct: 308 TEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGE 367

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+  I    + S+ V NALV+MY K G V  A   F+ M  RD +SW  MI+A++  G
Sbjct: 368 QLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAG 427

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             ++A + F +M E     NVI+WN++    ++ G ++  L++  +M  +    D +   
Sbjct: 428 DVEKAREYFDKMPER----NVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFS 483

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + AC+ +  L LG +I   A +  +    +V N+++TMYSRC  +  A  +F     K
Sbjct: 484 TSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK 543

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++++WN+M++GY       +   +F +M   G  P+ ++  S+L  C+    +  G+ + 
Sbjct: 544 NLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYF 603

Query: 435 CYILRR---AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGI 490
             + +    +  +EH +    +V++  R+G++ +AK++ + M  + +   + +L+A   I
Sbjct: 604 LSMTKDHGISPMSEHFV---CMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRI 660

Query: 491 QGEGRVA 497
            G  ++A
Sbjct: 661 HGNTKLA 667



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/543 (23%), Positives = 241/543 (44%), Gaps = 67/543 (12%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--L 141
           C  ++++   ++LHA  I +GL+ +  L   L+  Y++  L ++A  +     I +P   
Sbjct: 14  CASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVF--GGIMFPNVY 71

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRR-------IRG--DNFTYPSVLKACGEMMDVD 192
            WN +IS +   G   EA  ++++M  R        + G   N    + +KA G +  + 
Sbjct: 72  SWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLK 131

Query: 193 FGRVVHS-------CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
               +H         ID C      V  +++ MY K G +D A+++F +        WN+
Sbjct: 132 LALQLHGFAEKFDFGIDTC------VETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNS 185

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           MI  Y+  G  K+A +LF +M E     + ++WNT+     + G     L     M  Q 
Sbjct: 186 MIYGYSKYGSVKKALELFAKMPER----DTVSWNTMISILSQHGFGAETLNTFLEMWNQG 241

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVR--GCYGEYENVRNALITMYSRCKDLRH 363
              +S+     L AC+ +  L+ G  +H   VR   C   Y      LI MY++C  L  
Sbjct: 242 FRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGC--GLIDMYAKCGRLES 299

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           A  +F    E + ++W S++ G       EE+  LF +M    V  +  T+A++L +C  
Sbjct: 300 ARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLS 359

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
             ++  G++ H + + R + +  + + N+LV MYA+ G V +A   F+LM  RD +++T+
Sbjct: 360 QKDISIGEQLHAHTITRGL-DSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTA 418

Query: 484 LIAGYGIQGEGRVA-------------------------------LKLFEEMNKNQIKPD 512
           +I  +   G+   A                               LK++ +M +  +K D
Sbjct: 419 MITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTD 478

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            +T    +SAC+   +++ G +   +   + G    +     +V +Y R G + +A+++ 
Sbjct: 479 WITFSTSISACADLAVLILGNQILAQAEKL-GFSSNVSVANSVVTMYSRCGQIEEAQKMF 537

Query: 573 TKM 575
           + +
Sbjct: 538 SSI 540



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/498 (25%), Positives = 211/498 (42%), Gaps = 64/498 (12%)

Query: 182 LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           +K C  +  +   R +H+  I    + S+F+ N L++MY   G +  A R+F  ++  + 
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
            SWNTMIS +A  G  +EA +LF +M E     + ++WN++  G    G  +  ++    
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNGELEATIK---- 122

Query: 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
                             A   +G LKL  ++HG A +  +G    V  +++ MY +C  
Sbjct: 123 ------------------ASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGA 164

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR-------------------- 400
           +  A  +F  T   S+  WNSM+ GY+     +++  LF                     
Sbjct: 165 MDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQH 224

Query: 401 -----------EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
                      EM+  G  PN +T AS+L  C  + +L+ G   H  I+R     + +  
Sbjct: 225 GFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLD-VYA 283

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
              L++MYA+ G++  A+ VFD ++  + V++TSLI G    G    AL LF +M +  +
Sbjct: 284 GCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPV 343

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
             D  T+  VL  C     +  G+ Q    T   G+   +     +V +Y + G + KA 
Sbjct: 344 ASDQFTLATVLGVCLSQKDISIGE-QLHAHTITRGLDSSVPVANALVTMYAKCGDVWKAN 402

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
                MP     + W  ++ A       G  E A E   +    N   +  +   Y   G
Sbjct: 403 HAFELMPIRDIIS-WTAMITA---FSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRG 458

Query: 630 CWDKLAKVRTCMRDLGVR 647
            W++  KV   M   GV+
Sbjct: 459 YWEEGLKVYIQMLREGVK 476


>gi|356565618|ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 214/621 (34%), Positives = 326/621 (52%), Gaps = 45/621 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF  ++  C   K L Q KQLH   +  G   N   V KL+  YA  +   +A  L+   
Sbjct: 7   SFNSLLQAC---KTLNQAKQLHHRILLTGSHHNHFFVTKLIQIYADSNDLRSAVTLLHQI 63

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           +      +  ++S + R G   + +  Y +++   +  D + +P VLKAC ++     GR
Sbjct: 64  SHPNVFAFTSILSFHSRHGLGHQCIQTYAELRRNGVVPDGYVFPKVLKACAQLSRFGSGR 123

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH  +    E S L V N+++ MY K G V  AR++FD+M ERD  SWN+M+S Y   G
Sbjct: 124 GVHKDVVVFGEESNLQVRNSVLDMYSKCGDVGSARQVFDEMSERDVFSWNSMMSGYVWNG 183

Query: 255 LWKEAFQLFVEMQEEGV--EVNVITWNTIAGGCLRTGN---------------------- 290
           L  +A ++   M+++G   E +V+TWNT+     R G                       
Sbjct: 184 LPHKAVEVLGVMKKDGCGCEPDVVTWNTVMDAYCRMGQCCEASRVFGEIEDPNVISWTIL 243

Query: 291 ---FKGV------LELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGC 340
              + GV      L +  +M         V  + G L +C H+GAL  GKEIHG  ++  
Sbjct: 244 ISGYAGVGRHDVSLGIFRQMVNVGMVSPDVDALSGVLVSCRHLGALASGKEIHGYGLKIM 303

Query: 341 YGE--YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
            G+  Y +   AL+ +Y+    L  A  +F    +  ++TWN+M+ G   +   + +   
Sbjct: 304 CGDVFYRSAGAALLMLYAGWGRLDCADNVFWRMDKSDVVTWNAMIFGLVDVGLVDLALDC 363

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           FREM   GV  +  TI+SILP+C    +L+ GKE H Y+ R+  F+  + ++N+L+ MY+
Sbjct: 364 FREMQGRGVGIDGRTISSILPVC----DLRCGKEIHAYV-RKCNFSGVIPVYNALIHMYS 418

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
             G +  A SVF  M  RD V++ ++I G+G  G G+ AL+L +EM+ + ++PD VT   
Sbjct: 419 IRGCIAYAYSVFSTMVARDLVSWNTIIGGFGTHGLGQTALELLQEMSGSGVRPDLVTFSC 478

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
            LSACSHSGLV EG + F RMT  + + P  EHF+C+VD+  RAG L  A   I +MP  
Sbjct: 479 ALSACSHSGLVNEGIELFYRMTKDFSMTPAREHFSCVVDMLARAGRLEDAFHFINQMPQE 538

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638
           P + +W  LL ACQ H+N  +G+ AAEKL+   P  +G+YV ++N+Y+  G WD  A+VR
Sbjct: 539 PNNHVWGALLAACQEHQNISVGKLAAEKLISLEPHEAGHYVTLSNIYSRAGRWDDAARVR 598

Query: 639 TCMRDLGVRKIPGCAWVDAGN 659
             M   G+ K  G + V  G+
Sbjct: 599 KMMDGHGLLKPSGHSLVGTGS 619



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 124/266 (46%), Gaps = 18/266 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTR-IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHA---- 98
           +  +AG G    +   F + + +   S DV  D+ + ++  C  + ALA GK++H     
Sbjct: 244 ISGYAGVGRHDVSLGIFRQMVNVGMVSPDV--DALSGVLVSCRHLGALASGKEIHGYGLK 301

Query: 99  --CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
             C           L+  L   +      +N  + ++ S++   + WN +I   V  G  
Sbjct: 302 IMCGDVFYRSAGAALL-MLYAGWGRLDCADNVFWRMDKSDV---VTWNAMIFGLVDVGLV 357

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF-VHNAL 215
             AL  +++MQ R +  D  T  S+L  C    D+  G+ +H+ +  C+   +  V+NAL
Sbjct: 358 DLALDCFREMQGRGVGIDGRTISSILPVC----DLRCGKEIHAYVRKCNFSGVIPVYNAL 413

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MY   G +  A  +F  M+ RD VSWNT+I  + + GL + A +L  EM   GV  ++
Sbjct: 414 IHMYSIRGCIAYAYSVFSTMVARDLVSWNTIIGGFGTHGLGQTALELLQEMSGSGVRPDL 473

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRM 301
           +T++     C  +G     +EL  RM
Sbjct: 474 VTFSCALSACSHSGLVNEGIELFYRM 499


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 203/616 (32%), Positives = 330/616 (53%), Gaps = 27/616 (4%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           +K+ +Q +QLHA  +      +   +  L++ Y+  +L +++  L    +    L W  +
Sbjct: 19  IKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSV 77

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH 205
           I  Y   G   ++L  +  M +  +  D+  +PSVLK+C  +MD++ G  +H   I    
Sbjct: 78  IRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGL 137

Query: 206 EWSLFVHNALVSMYGKFGQVDVARR-------LFDKMLERDAVSWNTMISAYASKGLWKE 258
           ++ L+  NAL++MY K   ++ + R       +FD+M ER         S      L ++
Sbjct: 138 DFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTR-------SVRTVSVLSED 190

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           + +   EM  E    ++++WNTI  G  R G ++  L ++  M       DS      L 
Sbjct: 191 SVRKIFEMMPEK---DLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
             +    +  GKEIHG ++R        V ++LI MY++C  +  +  +F +  E+  I+
Sbjct: 248 LIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGIS 307

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WNS+++G       +E    FR+M  + ++P   + +SI+P CA +  L  GK+ H YI 
Sbjct: 308 WNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT 367

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R   F+E++ + +SLV+MYA+ G +  AK +FD M  RD V++T++I G  + G+   A+
Sbjct: 368 RNG-FDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAI 426

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LFE+M    IK       AVL+ACSH GLV E  K F  MT  +GI P +EH+A + DL
Sbjct: 427 ELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDL 479

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L +A + I  M   PT ++WATLL AC++H+N  + E  A ++LE  P N+G Y
Sbjct: 480 LGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAY 539

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           +L+AN+Y+A   W + AK R  MR +G+RK P C+W++  N    F+  D S+   ++I 
Sbjct: 540 ILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIR 599

Query: 679 PLLGGLTELMKDAGYV 694
             +  L ELM+  GYV
Sbjct: 600 EAMEVLVELMEKEGYV 615



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+ I+  C  +  L  GKQLH      G ++N  +   LV  YA       A  + +  
Sbjct: 342 SFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
            +R  + W  +I      G   +A+ +++QM++  I+       +VL AC     VD
Sbjct: 402 RLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVD 451


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 328/629 (52%), Gaps = 44/629 (6%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           ++ AH+I    K K L +GKQLHA  I  G      L   LV  Y+     ++A  L + 
Sbjct: 6   NALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDT 65

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD---NFTYPSVLKACGEMMDV 191
              R  + W  +IS   ++  ++EA+  +  M   RI G+    F + S ++AC  +  +
Sbjct: 66  MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGM---RICGEVPTQFAFSSAIRACASLGSI 122

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           + G+ +H   +       LFV + L  MY K G +  A ++F++M  +D VSW  MI  Y
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           +                                   + G F+  L    +M  +E  +D 
Sbjct: 183 S-----------------------------------KIGEFEEALLAFKKMIDEEVTIDQ 207

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 LGAC  + A K G+ +H S V+  +     V NAL  MYS+  D+  A  +F +
Sbjct: 208 HVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGI 267

Query: 371 TAE-KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
            +E ++++++  ++ GY   +  E+   +F E+ R G+EPN  T +S++  CA  A L+ 
Sbjct: 268 DSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQ 327

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G + H  +++   F+E   + + LV+MY + G + +A   FD +    E+ + SL++ +G
Sbjct: 328 GTQLHAQVMK-INFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFG 386

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G+ A+K+FE M    +KP+ +T +++L+ CSH+GLV EG   F  M   YG+ P  
Sbjct: 387 QHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGE 446

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH++C++DL GRAG L +AKE I +MP+ P +  W + LGAC+IH +  +G+ AAEKL++
Sbjct: 447 EHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK 506

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             P+NSG  VL++N+YA    W+ +  VR  MRD  V+K+PG +WVD G     F  +D 
Sbjct: 507 LEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDW 566

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
           S+ +   IY  L  L + +K AGYV + +
Sbjct: 567 SHPRKSAIYEKLDTLLDQIKAAGYVPRTD 595


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  345 bits (884), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 202/622 (32%), Positives = 328/622 (52%), Gaps = 37/622 (5%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-----SFSLYNNACFLVENSNIRYP 140
           K K+++Q KQ+ +  +  GL ++     +L+ F A           N  F   N N    
Sbjct: 15  KCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNT--- 71

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQ-MQSRRIRGDNFTYPSVLKACGEMMDVD-----FG 194
             WN+ I  ++      EA+ +YK+ +Q    + DN+TYP + KAC  +  +       G
Sbjct: 72  FSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILG 131

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            V+H   D+     +FV NA++ +    G +D AR++FDK   RD VSWN+MI+ Y  +G
Sbjct: 132 HVLHLGFDS----DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 187

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA   + EM+ EG++ + +T   +   C +       LE L   R    Y++     
Sbjct: 188 WAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQ-------LEDLDLGRESHCYIEENGLK 240

Query: 315 IGLGACSHV-------GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
           + +   + +       G L+  +++  S        +      ++  Y++   L  A+ L
Sbjct: 241 LTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSW----TTMVVGYAQSGLLDMAWKL 296

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F    +K ++ WN+M+ GY H +  +E+  LF EM    + P+ VT+ S L  C+++  L
Sbjct: 297 FDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGAL 356

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
             G   H YI +  + + ++ L  +L++MYA+ GK+ +A  VF  +  R+ +T+T++I+G
Sbjct: 357 DVGIWIHHYIEKHEL-SLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISG 415

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
             + G    A+  F EM  N + PD VT + +LSAC H GLV EG+K F +M+S + + P
Sbjct: 416 LALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSP 475

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
           +L+H++CMVDL GRAGLL +A+E+I  MP    + +W  L  AC+IH N  +GE AA KL
Sbjct: 476 KLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKL 535

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
           L+  P +SG YVL+ANMY     W +  K R  MR  GV K PGC+ ++   +   F+V 
Sbjct: 536 LQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVR 595

Query: 668 DTSNVQAQEIYPLLGGLTELMK 689
           D S+ Q+++IY  L  LT  ++
Sbjct: 596 DKSHPQSEQIYECLIQLTRQLE 617



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 210/426 (49%), Gaps = 12/426 (2%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C ++  +  G ++    + LG + +  +   ++    S    + A  + + S +R  + W
Sbjct: 117 CARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSW 176

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+ YVR G+  EAL  Y++M+   I+ D  T   V+ +C ++ D+D GR  H  I+ 
Sbjct: 177 NSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEE 236

Query: 204 CH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              + ++ + NAL+ MY K G ++ AR+LFD M  +  VSW TM+  YA  GL   A++L
Sbjct: 237 NGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKL 296

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F EM ++    +V+ WN + GG +     K  L L + M+      D V  V  L ACS 
Sbjct: 297 FDEMPDK----DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQ 352

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +GAL +G  IH    +        +  ALI MY++C  +  A  +F+    ++ +TW ++
Sbjct: 353 LGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAI 412

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SG      A  +   F EM  + V P+ VT   +L  C     ++ G+++   +  +  
Sbjct: 413 ISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFN 472

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSL-----IAGYGIQGEGRV 496
            +  L  ++ +V++  R+G + EA+ +   M    D V + +L     I G  + GE R 
Sbjct: 473 LSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGE-RA 531

Query: 497 ALKLFE 502
           A KL +
Sbjct: 532 ASKLLQ 537



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 36/294 (12%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +  RG   +A   +  +++     D V  +   ++  C +++ L  G++ H      
Sbjct: 180 INGYVRRGWAYEALNFYREMKVEGIKPDEV--TMIGVVSSCAQLEDLDLGRESHCYIEEN 237

Query: 104 GLE-------------------------------KNPVLVPKLVTFYASFSLYNNACFLV 132
           GL+                               K  V    +V  YA   L + A  L 
Sbjct: 238 GLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLF 297

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +    +  +PWN +I  YV      EAL ++ +MQ+  I  D  T  S L AC ++  +D
Sbjct: 298 DEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALD 357

Query: 193 FGRVVHSCIDACHEWSLFVH--NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
            G  +H  I+  HE SL V    AL+ MY K G++  A ++F ++  R++++W  +IS  
Sbjct: 358 VGIWIHHYIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGL 416

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           A  G    A   F EM +  V  + +T+  +   C   G  +   +  S+M ++
Sbjct: 417 ALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSK 470


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  345 bits (884), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 198/603 (32%), Positives = 321/603 (53%), Gaps = 47/603 (7%)

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            GL  +  L+  ++     FS  N   FL           WN +I   V +  + +A+  
Sbjct: 40  FGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEF 99

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           Y  M+S     +NFT+P VLKAC  ++D+  G  +H+  +    +  +FV  +LV +Y K
Sbjct: 100 YGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAK 159

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A ++FD + +++ VSW  +IS Y   G ++EA  +F  +    +E+N+      
Sbjct: 160 CGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRL----LEMNLAP---- 211

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                      DS   V  L AC+ +G L  G+ IH      C 
Sbjct: 212 ---------------------------DSFTIVRVLSACTQLGDLNSGEWIH-----KCI 239

Query: 342 GEYENVRN-----ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
            E   VRN     +L+ MY++C ++  A  +F    EK I++W +M+ GY      +E+ 
Sbjct: 240 MEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAI 299

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF +M R  V+P+  T+  +L  CAR+  L+ G E+   ++ R  F  + +L  +L+++
Sbjct: 300 DLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEFLYNPVLGTALIDL 358

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G +  A  VF  M  +D V + ++I+G  + G  +++  LF ++ K  IKPD  T 
Sbjct: 359 YAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTF 418

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           + +L  C+H+GLV EG++ F  M   + + P +EH+ CMVDL GRAGLL++A ++I  MP
Sbjct: 419 IGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMP 478

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
               + +W  LLGAC+IHR+T + E A ++L+E  P NSG YVL++N+Y+A   WD+ AK
Sbjct: 479 MEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAK 538

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVK 696
           VR  M +  ++K PGC+W++   +   FLV D  +  +++IY  L  LT+ MK AGYV  
Sbjct: 539 VRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPT 598

Query: 697 EEF 699
            +F
Sbjct: 599 TDF 601



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 200/425 (47%), Gaps = 39/425 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C ++  L  G ++H   +  G + +  +   LV  YA      +A  + ++ 
Sbjct: 114 TFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDI 173

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + W  +IS Y+  G + EA+ +++++    +  D+FT   VL AC ++ D++ G 
Sbjct: 174 PDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGE 233

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H CI +     ++FV  +LV MY K G ++ AR +FD M E+D VSW  MI  YA  G
Sbjct: 234 WIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNG 293

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L KEA  LF++MQ E V+ +                                      TV
Sbjct: 294 LPKEAIDLFLQMQRENVKPDCY------------------------------------TV 317

Query: 315 IG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           +G L AC+ +GAL+LG+ + G   R  +     +  ALI +Y++C  +  A+ +FK   E
Sbjct: 318 VGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKE 377

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K  + WN+++SG       + S  LF ++ + G++P+  T   +L  C     +  G+ +
Sbjct: 378 KDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRY 437

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQG 492
              + R       +  +  +V++  R+G + EA  +   M    + + + +L+    I  
Sbjct: 438 FNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHR 497

Query: 493 EGRVA 497
           + ++A
Sbjct: 498 DTQLA 502


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 305/557 (54%), Gaps = 39/557 (7%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVH- 198
           L WN ++  +V       AL  Y +M  R R   D FT+PS+LK C  +++   G+V+H 
Sbjct: 44  LTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHG 103

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +       L++   L++MY   G +  AR LF++M  R+ V W +MIS Y       E
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  L+ +M+E+G   + +T  T+   C    +    ++L S +R  +     +  V+G  
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDM---KICAVLG-- 218

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
                                         +AL+ MY++C DL+ A  +F   ++K +  
Sbjct: 219 ------------------------------SALVNMYAKCGDLKTARQVFDKLSDKDVYA 248

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           W++++ GY   + + E+  LFRE+   S + PN VTI +++  CA++ +L+ G+  H YI
Sbjct: 249 WSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI 308

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
             R      + L NSL++M+++ G +  AK +FD MS +D +++ S++ G+ + G GR A
Sbjct: 309 -TRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREA 367

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L  F  M    ++PD +T + VL+ACSH+GLV EG+K F  + ++YG+  + EH+ CMVD
Sbjct: 368 LAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVD 427

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L  RAGLL +A+E I  MP  P  A+W ++LGAC+++ N  +GE AA  LL+  P N G 
Sbjct: 428 LLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGV 487

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           Y+L++N+YA    W+++ KVR  M + G++K PGC+ V   N+   FL  D S+ +  EI
Sbjct: 488 YILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEI 547

Query: 678 YPLLGGLTELMKDAGYV 694
             +L  + E +K AGYV
Sbjct: 548 SIMLRQVREKLKLAGYV 564



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 191/404 (47%), Gaps = 45/404 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  +     GK LH   +   L  +  +   L+  YA+     +A FL E  
Sbjct: 81  TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERM 140

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +IS Y+++    EAL +YK+M+      D  T  +++ AC E+ D+  G 
Sbjct: 141 GHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGM 200

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS I +   +    + +ALV+MY K G +  AR++FDK+ ++D  +W+ +I  Y    
Sbjct: 201 KLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNN 260

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA QLF E               +AGG              S MR  E  + +V   
Sbjct: 261 RSTEALQLFRE---------------VAGG--------------SNMRPNEVTILAV--- 288

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + AC+ +G L+ G+ +H    R   G   ++ N+LI M+S+C D+  A  +F   + K
Sbjct: 289 --ISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK 346

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +I+WNSM++G+       E+   FR M  + ++P+ +T   +L  C+    +Q GK+  
Sbjct: 347 DLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLF 406

Query: 435 CYILRRAMF-----NEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             I   A++     +EH   +  +V++  R+G + EA+    +M
Sbjct: 407 YEI--EALYGVRLKSEH---YGCMVDLLCRAGLLAEAREFIRVM 445



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 190/404 (47%), Gaps = 52/404 (12%)

Query: 210 FVH-----NALVSMYGKFGQVDV--ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           F+H     N L++     G + V  A  +F    E D ++WN+M+ A+ +  + + A Q 
Sbjct: 6   FIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQS 65

Query: 263 FVEMQEEGVEV-NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           + EM E    V +  T+ ++  GC     FK                             
Sbjct: 66  YTEMLERSRNVPDRFTFPSLLKGCALLLEFK----------------------------- 96

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
                 +GK +HG  V+        +   L+ MY+ C DL+ A  LF+    ++ + W S
Sbjct: 97  ------VGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+SGY    C  E+  L+++M   G  P+ VT+A+++  CA + +L  G + H +I R  
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI-REM 209

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
                 +L ++LV MYA+ G +  A+ VFD +S +D   +++LI GY        AL+LF
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLF 269

Query: 502 EEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY-GIFPQLEHFACMVDLY 559
            E+   + ++P+ VT++AV+SAC+  G +  G+   + +T    G    L +   ++D++
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNN--SLIDMF 327

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
            + G ++ AK I   M Y    + W +++    +H   G+G  A
Sbjct: 328 SKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGFALH---GLGREA 367



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 164/352 (46%), Gaps = 49/352 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  C ++K L  G +LH+    + ++   VL   LV  YA       A  + +  
Sbjct: 182 TMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKL 241

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFG 194
           + +    W+ LI  YV++    EAL +++++     +R +  T  +V+ AC ++ D++ G
Sbjct: 242 SDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG 301

Query: 195 RVVHSCIDACHE-WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R VH  I    +  S+ ++N+L+ M+ K G +D A+R+FD M  +D +SWN+M++ +A  
Sbjct: 302 RWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALH 361

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           GL +EA   F  MQ   ++ + IT             F GVL                  
Sbjct: 362 GLGREALAQFRLMQTTDLQPDEIT-------------FIGVLT----------------- 391

Query: 314 VIGLGACSHVGALKLGKEI--HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-M 370
                ACSH G ++ GK++     A+ G   + E+    ++ +  R   L  A    + M
Sbjct: 392 -----ACSHAGLVQEGKKLFYEIEALYGVRLKSEHY-GCMVDLLCRAGLLAEAREFIRVM 445

Query: 371 TAEKSIITWNSMLSG---YTHLDCAEESA-FLFR-EMFRSGVEPNYVTIASI 417
             +     W SML     Y +L+  EE+A FL + E    GV   Y+ +++I
Sbjct: 446 PLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGV---YILLSNI 494


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 216/722 (29%), Positives = 353/722 (48%), Gaps = 105/722 (14%)

Query: 44  LKDFAGRGNLSKAFEAFT-RIRIT---AASHDVVLDSFAHIIFCCGKVKALAQGKQLHAC 99
           +  ++  G  S++FE F+  IR T     ++D    SF  ++  CG +       QLHA 
Sbjct: 114 ISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPF--SFTSVMKACGSLGDSRLAIQLHAL 171

Query: 100 AIALGLEKNPVLVPKLVTFY---ASFSLYNNACFLVENSNI------------------- 137
              LG      +   +V  Y       L     F +E  ++                   
Sbjct: 172 VSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKA 231

Query: 138 ---------RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
                    R  + WN LIS++ + GF  + L ++ +M ++    +  TY SVL AC   
Sbjct: 232 LQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACAST 291

Query: 189 MDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
            D+ +G  +H+ I    H   L   N L+ MY K G +D+A+R+F  + E D        
Sbjct: 292 SDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDH------- 344

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
                                       I+WN++  G +  G  +  L L ++MR     
Sbjct: 345 ----------------------------ISWNSLITGVVHFGLGEDALILFNQMRRSSVV 376

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
           LD       LG CS       G+ +HG  ++   G    V NA+ITMY++C D   A ++
Sbjct: 377 LDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLV 436

Query: 368 FK-------------------------------MTAEKSIITWNSMLSGYTHLDCAEESA 396
           F+                               M  E++I+TWNSMLS Y     +EE  
Sbjct: 437 FRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGL 496

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            L+  M  +GV+P+++T  + +  CA +A ++ G +   +  +  + + ++ + NS+V M
Sbjct: 497 KLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGL-SLNVSVANSIVTM 555

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y+R G + EAK+ FD +  +D +++ +++A +   G G   +  FE+M K + KP+H++ 
Sbjct: 556 YSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISY 615

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           V+VLS CSH GLV EG+  F+ MT ++GI P  EHF+CMVDL GRAGLL +AK++I  MP
Sbjct: 616 VSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMP 675

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           + P + +W+ LLG+C++H +  + E AA+KL+E   E S  YVL++NMY+ +G  D +A 
Sbjct: 676 FKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVAD 735

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVK 696
           +R  M+  G+R   GC+W++  N    F VD+TS+ Q +E+Y  L  + ++++D G  + 
Sbjct: 736 MRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGKYIT 795

Query: 697 EE 698
            E
Sbjct: 796 VE 797



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/499 (24%), Positives = 212/499 (42%), Gaps = 102/499 (20%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG----DNFTYPSVLKACGEMMDVD 192
           ++  + W  +IS Y ++GF++ +   +  M      G    D F++ SV+KACG + D  
Sbjct: 104 VKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSR 163

Query: 193 FGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVAR---------------------- 229
               +H+ +          + N++V MY K G VD+A                       
Sbjct: 164 LAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYS 223

Query: 230 ---------RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
                    ++F++M ERD VSWNT+IS ++  G   +   +FVEM  +G   N +T+ +
Sbjct: 224 QMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGS 283

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +   C  T + K    L +R+   E  LD V                             
Sbjct: 284 VLSACASTSDLKWGAHLHARILRMEHSLDLV----------------------------- 314

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +G      N LI MY++C  L  A  +FK   E   I+WNS+++G  H    E++  LF 
Sbjct: 315 FG------NGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFN 368

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR--------------------- 439
           +M RS V  +   + +IL +C+       G+  H Y ++                     
Sbjct: 369 QMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCG 428

Query: 440 ---------RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
                    R M   + + W +++  ++RSG + +A+  FD+M  R+ VT+ S+++ Y  
Sbjct: 429 DTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQ 488

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G     LKL+  M  N ++PD +T    + AC+   +V  G +     T  +G+   + 
Sbjct: 489 NGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATK-FGLSLNVS 547

Query: 551 HFACMVDLYGRAGLLNKAK 569
               +V +Y R GL+ +AK
Sbjct: 548 VANSIVTMYSRCGLIKEAK 566



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 197/470 (41%), Gaps = 53/470 (11%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV-NVI 276
           MY   G    A ++F +   R+  +WNTMI A  S     +A +LF EM    V V + +
Sbjct: 52  MYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMP---VRVKDSV 108

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQET----YLDSVATVIGLGACSHVGALKLGKEI 332
           +W T+  G  + G      E  S M           D  +    + AC  +G  +L  ++
Sbjct: 109 SWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQL 168

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL--- 389
           H    +  +G    ++N+++ MY +C D+  A  +F      S+  WNSM+ GY+ +   
Sbjct: 169 HALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGP 228

Query: 390 ----------------------DCAEESAF------LFREMFRSGVEPNYVTIASILPLC 421
                                     +  F      +F EM   G  PN++T  S+L  C
Sbjct: 229 YKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSAC 288

Query: 422 ARVANLQHGKEFHCYILRRAMFNEH---LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
           A  ++L+ G   H  ILR     EH   L+  N L++MYA+ G +  AK VF  +   D 
Sbjct: 289 ASTSDLKWGAHLHARILRM----EHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDH 344

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           +++ SLI G    G G  AL LF +M ++ +  D   +  +L  CS       G+     
Sbjct: 345 ISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGE-LLHG 403

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
            T   G+         ++ +Y + G  +KA  +   MP   T + W  ++ A    R+  
Sbjct: 404 YTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTIS-WTAMITA--FSRSGD 460

Query: 599 IGEWAAEKLLETRPE-NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           IG+  A    +  PE N   +  + + Y   G  ++  K+   MR  GV+
Sbjct: 461 IGK--ARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQ 508


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 210/650 (32%), Positives = 332/650 (51%), Gaps = 52/650 (8%)

Query: 72  VVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           V+LD  +F  +I  C K   +  G ++H   +  G  +N  L   L+  Y+        C
Sbjct: 129 VLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVC 188

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            L E    R  + WN +IS YV  G Y EAL ++ +M    +  D  T  S++  C ++ 
Sbjct: 189 QLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLK 248

Query: 190 DVDFGRVVHSCIDACHEW---SLFVHNALVSMYGKFGQVDVARRLFDKMLER--DAVSWN 244
           D++ G+ +H  I     W   SL   N LV MY K G++D A  L  +  E   D V W 
Sbjct: 249 DLEMGKRLHLYIVDNKLWIRGSLL--NCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWT 306

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           T++S Y       +A QLF +M E     ++++W T+  G ++ G +   LEL  +MR +
Sbjct: 307 TLVSGYVKSNKIDKARQLFDKMNER----SLVSWTTMMSGYVQGGYYCESLELFQQMRFE 362

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN--VRNALITMYSRCKDLR 362
               D VA V  L AC H+    LG+ +H   V   YG   +  + NAL+ +Y++C  L 
Sbjct: 363 NVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVT--YGMLVDGFLGNALLDLYAKCGKLD 420

Query: 363 HAY-------------------------------ILFKMTAEKSIITWNSMLSGYTHLDC 391
            A                                  F    EK I++WN+M++ Y   D 
Sbjct: 421 EALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDL 480

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             ES  +F +M  S V+P+  T+ S+L  CA+V  L HG   + YI +  +  +  +L  
Sbjct: 481 FNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGID-AMLGT 539

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +L++MY + G V  A  +F  +  ++   +T+++A Y ++G+   A+ L+ EM +  +KP
Sbjct: 540 ALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKP 599

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           DHVT +A+L+ACSH GLV EG K F ++ S Y I P + H+ CMVDL GR G L +  + 
Sbjct: 600 DHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKF 659

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I +MP  P  ++W++L+ AC+ H N  + E A ++L+E  P N+G +VL++N+YA  G W
Sbjct: 660 IERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRW 719

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           D ++KVRT + + GV K PG   ++   V   F+    SN+ + +I  +L
Sbjct: 720 DDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFV---ASNLVSADILCML 766



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 138/537 (25%), Positives = 248/537 (46%), Gaps = 57/537 (10%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           +HA  I   L  +P +  +++ F  S +  + A  ++  S+    + WN L+   +++G 
Sbjct: 54  IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGC 113

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNA 214
             E L  Y  M ++ +  D  T+  ++ AC +  DV  G  VH  I  C    +  ++N 
Sbjct: 114 PQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNN 173

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+ +Y K G++    +LF+KM  RD +SWNTMIS Y  KG+++EA  LF EM   GV  +
Sbjct: 174 LMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPD 233

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGK--E 331
            IT  ++   C +  +    LE+  R+      +D+   + G L  C      K GK  E
Sbjct: 234 EITMVSLVSTCAKLKD----LEMGKRLHLY--IVDNKLWIRGSLLNCLVDMYSKCGKMDE 287

Query: 332 IHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
            HG   R    E + V    L++ Y +   +  A  LF    E+S+++W +M+SGY    
Sbjct: 288 AHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGG 347

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL-- 448
              ES  LF++M    V P+ V + ++L  C  + +   G+  H +I+   M  +  L  
Sbjct: 348 YYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGN 407

Query: 449 ----------------------------LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
                                        WNS+++ + RSG V +A+  F+ +  +D V+
Sbjct: 408 ALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVS 467

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG-------Q 533
           + +++  Y        + ++F +M  + +KPD  T++++LS+C+  G +  G       +
Sbjct: 468 WNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIE 527

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           K    + ++ G          ++D+YG+ G +  A EI T++       +W  ++ A
Sbjct: 528 KNEIGIDAMLG--------TALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAA 575


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/605 (32%), Positives = 325/605 (53%), Gaps = 18/605 (2%)

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQM 166
           P L ++      Y+ A  + E  +    LP      WN+LI  Y   G    A+  Y  M
Sbjct: 70  PNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 129

Query: 167 QSRRIRGD--NFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFG 223
             R    +    T  ++LK       V  G+ +H   I    E  L V + L+ MY   G
Sbjct: 130 M-RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVG 188

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +  A+++F  + +R+ V +N+++    + G+ ++A QLF      G+E + ++W  +  
Sbjct: 189 CISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLF-----RGMEKDSVSWAAMIK 243

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G  + G  K  +E    M+ Q   +D       L AC  +GA+  GK+IH   +R  + +
Sbjct: 244 GLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQD 303

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
           +  V +ALI MY +CK L +A  +F    +K++++W +M+ GY     AEE+  +F +M 
Sbjct: 304 HIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQ 363

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           RSG++P++ T+   +  CA V++L+ G +FH   +   + + ++ + NSLV +Y + G +
Sbjct: 364 RSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIH-YVTVSNSLVTLYGKCGDI 422

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            ++  +F+ M+ RD V++T++++ Y   G     ++LF++M ++ +KPD VT+  V+SAC
Sbjct: 423 DDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISAC 482

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           S +GLV +GQ+ F+ MTS YGI P + H++CM+DL+ R+G L +A   I  MP+ P +  
Sbjct: 483 SRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIG 542

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W TLL AC+   N  IG+WAAE L+E  P +   Y L++++YA+ G WD +A++R  MR+
Sbjct: 543 WTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMRE 602

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
             V+K PG +W+        F  DD S+    +IY  L  L   + D GY     F   +
Sbjct: 603 KNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHD 662

Query: 704 EIVEE 708
             VEE
Sbjct: 663 --VEE 665



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 189/398 (47%), Gaps = 39/398 (9%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F++N +V  Y        ARR+FD++ + +  SWN ++ AY+  GL  E    F ++ + 
Sbjct: 42  FLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDR 101

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELL-SRMRTQETYLDSVATVIGLGACSHVGALKL 328
               + +TWN +  G   +G     ++   + MR     L  V  +  L   S  G + L
Sbjct: 102 ----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSL 157

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSR------------------------------- 357
           GK+IHG  ++  +  Y  V + L+ MY+                                
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           C  +  A  LF+   EK  ++W +M+ G      A+E+   FREM   G++ +     S+
Sbjct: 218 CGMIEDALQLFR-GMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSV 276

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP C  +  +  GK+ H  I+ R  F +H+ + ++L++MY +   +  AK+VFD M +++
Sbjct: 277 LPACGGLGAINEGKQIHACII-RTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKN 335

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V++T+++ GYG  G    A+K+F +M ++ I PDH T+   +SAC++   + EG  QF 
Sbjct: 336 VVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGS-QFH 394

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
                 G+   +     +V LYG+ G ++ +  +  +M
Sbjct: 395 GKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/462 (22%), Positives = 218/462 (47%), Gaps = 69/462 (14%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFS------------------LYNN------A 128
           GKQ+H   I LG E   ++   L+  YA+                    +YN+      A
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217

Query: 129 CFLVENSNIRY------PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
           C ++E++   +       + W  +I    ++G   EA+  +++M+ + ++ D + + SVL
Sbjct: 218 CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277

Query: 183 KACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
            ACG +  ++ G+ +H+CI   + +  ++V +AL+ MY K   +  A+ +FD+M +++ V
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SW  M+  Y   G  +EA ++F++MQ  G++ +  T                        
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQ--------------------- 376

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
                          + AC++V +L+ G + HG A+      Y  V N+L+T+Y +C D+
Sbjct: 377 --------------AISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDI 422

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
             +  LF     +  ++W +M+S Y     A E+  LF +M + G++P+ VT+  ++  C
Sbjct: 423 DDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISAC 482

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVT 480
           +R   ++ G+ +   +         +  ++ ++++++RSG++ EA    + M    D + 
Sbjct: 483 SRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIG 542

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +T+L++    + +G + +  +   +  ++ P H     +LS+
Sbjct: 543 WTTLLS--ACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSS 582



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 3/247 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K  A  G   +A E F  +++     D     F  ++  CG + A+ +GKQ+HAC I  
Sbjct: 242 IKGLAQNGLAKEAIECFREMKVQGLKMDQY--PFGSVLPACGGLGAINEGKQIHACIIRT 299

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
             + +  +   L+  Y      + A  + +    +  + W  ++  Y + G   EA+ ++
Sbjct: 300 NFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIF 359

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
             MQ   I  D++T    + AC  +  ++ G   H   I +     + V N+LV++YGK 
Sbjct: 360 LDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKC 419

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +D + RLF++M  RDAVSW  M+SAYA  G   E  QLF +M + G++ + +T   + 
Sbjct: 420 GDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVI 479

Query: 283 GGCLRTG 289
             C R G
Sbjct: 480 SACSRAG 486



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 3/182 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +    I  C  V +L +G Q H  AI  GL     +   LVT Y      +++  L    
Sbjct: 373 TLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           N+R  + W  ++S Y + G   E + ++ +M    ++ D  T   V+ AC     V+ G+
Sbjct: 433 NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQ 492

Query: 196 VVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYAS 252
                + + +    S+  ++ ++ ++ + G+++ A R  + M    DA+ W T++SA  +
Sbjct: 493 RYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRN 552

Query: 253 KG 254
           KG
Sbjct: 553 KG 554


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/614 (31%), Positives = 318/614 (51%), Gaps = 42/614 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G   +A + + ++       D +  +F   +  C K   L  GK +HA  ++ 
Sbjct: 219 ISSYANNGFCDEALDLYQQMDADGIQPDSI--TFTSALLACTK---LVDGKAIHARIVSS 273

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            +E + V    L+  YA     ++A    E    ++ + W  L++ YV+   Y EAL +Y
Sbjct: 274 NMESDFV-GSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLY 332

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFG 223
            +M    +  D  TY + L AC  +  +  G+ +HS +  C   SL VH AL++MY K G
Sbjct: 333 GRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCG 392

Query: 224 QVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           ++D AR +F+++ + R+   W  MISAYA  G  +EA +L+ +M  EG   N  T++ + 
Sbjct: 393 ELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNV- 451

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L ACS  G L+ G +IHG        
Sbjct: 452 ----------------------------------LAACSSSGDLEAGMKIHGHVENSELA 477

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V+NAL+TMY++C  L  A   F+ +  K +++WN+M+  Y       E+  L++ M
Sbjct: 478 SNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTM 537

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              GV P+ VTIAS L  CA   +LQ G+E H  +L+   F   L++  +LV MY R G+
Sbjct: 538 TSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGR 597

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A+S+F+ M +RD +++T++ + Y  QG     L L+ EM  + I+P+ +T  ++L  
Sbjct: 598 LETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVG 657

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSH+GL+  G + F  M S + + P  EHF CMVDL GR+G L  A+ ++  MPY P S 
Sbjct: 658 CSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSV 717

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
            W T+LG+C+ H +    + AA ++ E  PEN+  Y L+++++ A G   +  +V+  M+
Sbjct: 718 AWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMK 777

Query: 643 DLGVRKIPGCAWVD 656
           ++G++K PG + ++
Sbjct: 778 EMGLKKPPGQSLIE 791



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 161/606 (26%), Positives = 273/606 (45%), Gaps = 84/606 (13%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYPLP 142
           CG++ +LA+GK +H   +  G  +N  L   L+  Y +    + A    +N ++I+    
Sbjct: 52  CGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVAC 111

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           +N ++S Y ++G +  AL +Y +M       D  TY  VL +C  +  +   R +H+ I 
Sbjct: 112 YNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASII 171

Query: 203 ACHEW---SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
              +    +L + NALV+MYGK G V+ AR++FD +  RDAVSW +MIS+YA+ G   EA
Sbjct: 172 EAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEA 231

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             L+ +M  +G++ + IT+ +    C +                                
Sbjct: 232 LDLYQQMDADGIQPDSITFTSALLACTK-------------------------------- 259

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
                 L  GK IH   V     E + V +ALI MY+RC D+  A   F+    K ++ W
Sbjct: 260 ------LVDGKAIHARIVSSNM-ESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCW 312

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
            S+++ Y       E+  L+  M   GV  + VT  + L  CA +  L+ GK  H  +  
Sbjct: 313 TSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFE 372

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD-LMSRRDEVTYTSLIAGYGIQGEGRVAL 498
                + L++  +L+ MYA+ G++  A++VF+ +  +R+   +T++I+ Y   G  + AL
Sbjct: 373 CGF--QSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEAL 430

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF---------------ERMTSIY 543
           +L+++M     +P+  T   VL+ACS SG +  G K                   + ++Y
Sbjct: 431 ELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMY 490

Query: 544 GIFPQLE---------------HFACMVDLYGRAGLLNKAKEI---ITKMPYTPTSAMWA 585
                LE                +  M+  Y + GL  +A ++   +T     P     A
Sbjct: 491 AKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIA 550

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA--NMYAATGCWDKLAKVRTCMRD 643
           + L AC I  +  +G     ++L+ +   S   V  A  NMY   G   +L   R+   D
Sbjct: 551 SSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCG---RLETARSMFED 607

Query: 644 LGVRKI 649
           +G R +
Sbjct: 608 MGQRDV 613



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 199/431 (46%), Gaps = 47/431 (10%)

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           +Q+  RR  G    Y  +L+ CG +  +  G++VH   +   H  + F+ N L+ MYG  
Sbjct: 32  EQLDQRR-HGYVELYDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNC 90

Query: 223 GQVDVARRLFDKMLERDAVS-WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
           G++ +AR  F       AV+ +N M+SAY   GLW  A +L+  M EEG E + IT+  +
Sbjct: 91  GEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIV 150

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
            G                                   +CS VG+L+  +EIH S +    
Sbjct: 151 LG-----------------------------------SCSAVGSLREAREIHASIIEAPQ 175

Query: 342 GEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
              +N  ++NAL+ MY +C  +  A  +F     +  ++W SM+S Y +    +E+  L+
Sbjct: 176 IIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLY 235

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           ++M   G++P+ +T  S L  C ++ +   GK  H  I+   M  E   + ++L+ MYAR
Sbjct: 236 QQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNM--ESDFVGSALINMYAR 290

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G V  A+  F+ +  +  V +TSL+  Y      R AL L+  M+   +  D VT V  
Sbjct: 291 CGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTA 350

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           L AC+  G + EG+    R+      F  L     ++ +Y + G L+ A+ +  ++    
Sbjct: 351 LGACASLGALKEGKAIHSRVFECG--FQSLVVHTALLTMYAKCGELDAARAVFNRVRQKR 408

Query: 580 TSAMWATLLGA 590
               W  ++ A
Sbjct: 409 NVYCWTAMISA 419


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/582 (33%), Positives = 313/582 (53%), Gaps = 46/582 (7%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           CG +  L  G+ LH   + +G+  +P+++  L + Y+      +AC L      +  + W
Sbjct: 230 CGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSW 289

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
             LI +Y R G   EA+ +++QM    ++ D      VL   G   +V  G+  H+ I  
Sbjct: 290 TSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITK 349

Query: 204 CHEW-SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
            +   S+ + NAL+SMYGKF  VD A R+F  + +RDA SWN M+  Y            
Sbjct: 350 RNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYC----------- 398

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-----LDSVATVIGL 317
                + G +V                     LEL   M+ ++ Y      DS+ + I  
Sbjct: 399 -----KAGCDVKC-------------------LELYREMQLRDKYEFWCVADSLVSAIS- 433

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK-SI 376
            +CS +  L+LG+  H  +++    E  +V N LI MY RC    HA  +F +   K  +
Sbjct: 434 -SCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDV 492

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           +TWN+++S Y HL  +  +  L+ +M   G+ PN  T+ +++  CA +  L+ G++ H Y
Sbjct: 493 VTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSY 552

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           + +   ++  + +  +L++MYA+ G++  A+ +FD M + D V +  +I+GYG+ GE + 
Sbjct: 553 V-KEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGYGMHGEAKQ 611

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           AL+LF +M    IKP+ VT +A+LSA  HSGL+ EG+K F RM   Y + P L+H+ACMV
Sbjct: 612 ALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGK-YSLEPNLKHYACMV 670

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL G++G L +A++++  MP  P   +W TLL AC++H N  +G   A+K   + PEN G
Sbjct: 671 DLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKAFASDPENEG 730

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
           YY+LI+N Y     WD++ K+R  M++LGV+K  G + VD G
Sbjct: 731 YYILISNSYGGAKKWDEIEKLRETMKNLGVQKGVGWSAVDYG 772



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 141/564 (25%), Positives = 246/564 (43%), Gaps = 50/564 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA A+  GL + P L  KLV+ Y+S      A      S       WN LI  +    
Sbjct: 31  RVHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCAS 90

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNA 214
            +  AL  +++M +   R   FT P    A  E+  +  G  VH+    C  + L V   
Sbjct: 91  DFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHA---YCVRYGLLV--- 144

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
                G    V VA               ++++  YA  G  ++A ++F EM E     +
Sbjct: 145 -----GDGDSVAVA---------------SSLVYMYARCGNVRDAVKVFEEMPER----D 180

Query: 275 VITWNTIAGGCLRTG----NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           V+ W  +  GC+R G      + ++E++          +S     GL AC  +  L  G+
Sbjct: 181 VVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGR 240

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
            +HG  V+   G+   V +AL +MYS+C     A  LF    EK +++W S++  Y    
Sbjct: 241 CLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRG 300

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
              E+  LF++M  SG++P+ + ++ +L       N+  GK FH  I +R  F + +L+ 
Sbjct: 301 LITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRN-FGDSVLIG 359

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM---NKN 507
           N+L+ MY +   V  A  VF L+ +RD  ++  ++ GY   G     L+L+ EM   +K 
Sbjct: 360 NALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKY 419

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA----CMVDLYGRAG 563
           +      ++V+ +S+CS        + +  R    Y I   L+  +     ++ +YGR G
Sbjct: 420 EFWCVADSLVSAISSCSRL-----AELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCG 474

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLG--ACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
             + A +I            W TL+   A   H N  +  +  + L+E    NS   + +
Sbjct: 475 KFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLY-DQMLIEGLTPNSTTLITV 533

Query: 622 ANMYAATGCWDKLAKVRTCMRDLG 645
            +  A     ++  K+ + ++++G
Sbjct: 534 ISACANLVALERGEKIHSYVKEMG 557



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 2/231 (0%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           V DS    I  C ++  L  G+  H  +I   L+++  +   L+  Y     +++AC + 
Sbjct: 424 VADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIF 483

Query: 133 ENSNIRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
             + ++  +  WN LIS Y   G    A+ +Y QM    +  ++ T  +V+ AC  ++ +
Sbjct: 484 GLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVAL 543

Query: 192 DFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           + G  +HS + +   ++ + ++ AL+ MY K GQ+ +ARR+FD ML+ D V+WN MIS Y
Sbjct: 544 ERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGY 603

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
              G  K+A +LF +M+   ++ N +T+  I      +G  +   ++ +RM
Sbjct: 604 GMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRM 654


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 202/625 (32%), Positives = 324/625 (51%), Gaps = 44/625 (7%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           ++ AH+I    K K L +GKQLHA  I  G      L   LV  Y+     ++A  L + 
Sbjct: 6   NALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDT 65

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD---NFTYPSVLKACGEMMDV 191
              R  + W  +IS   ++  ++EA+  +  M   RI G+    F + S ++AC  +  +
Sbjct: 66  MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGM---RICGEVPTQFAFSSAIRACASLGSI 122

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           + G+ +H   +       LFV + L  MY K G +  A ++F++M  +D VSW  MI  Y
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           +                                   + G F+  L    +M  +E  +D 
Sbjct: 183 S-----------------------------------KIGEFEEALLAFKKMIDEEVTIDQ 207

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 LGAC  + A K G+ +H S V+  +     V NAL  MYS+  D+  A  +F +
Sbjct: 208 HVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGI 267

Query: 371 TAE-KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
            +E ++++++  ++ GY   +  E+   +F E+ R G+EPN  T +S++  CA  A L+ 
Sbjct: 268 DSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQ 327

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G + H  +++   F+E   + + LV+MY + G +  A   FD +    E+ + SL++ +G
Sbjct: 328 GTQLHAQVMK-INFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFG 386

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G+ A+K FE M    +KP+ +T +++L+ CSH+GLV EG   F  M   YG+ P  
Sbjct: 387 QHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGE 446

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH++C++DL GRAG L +AKE I +MP+ P +  W + LGAC+IH +  +G+ AAEKL++
Sbjct: 447 EHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK 506

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             P+NSG  VL++N+YA    W+ +  VR  MRD  V+K+PG +WVD G     F  +D 
Sbjct: 507 LEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDW 566

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYV 694
           S+ +   IY  L  L + +K AGYV
Sbjct: 567 SHXRKSAIYEKLDXLLDQIKAAGYV 591


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 212/645 (32%), Positives = 336/645 (52%), Gaps = 49/645 (7%)

Query: 63  IRITAASHDVVLDSFAHI-IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYA 120
           + +   S+ ++L +F    +   GK K    G ++HA  I  GL    + +   L+  YA
Sbjct: 380 VELNPNSYMIILTAFPEFHVLENGKRK----GSEVHAFLIRSGLLNAQIAIGNGLINMYA 435

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
                N+AC +    + +  + WN +I+   ++  + EA+  +++M+   +   NFT  S
Sbjct: 436 KCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMIS 495

Query: 181 VLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD 239
            L +C  +  +  G  +H   +    +  + V NAL+++YG+ G V   ++ F  ML+ D
Sbjct: 496 ALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYD 555

Query: 240 AVSWNTMISAYA-SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
            VSWN++I A A S+    EA + F+ M   G + N +T+ TI                 
Sbjct: 556 HVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITI----------------- 598

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
                             L A S +   +LGK+IH   ++        + NAL+  Y +C
Sbjct: 599 ------------------LAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKC 640

Query: 359 KDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
            D+ +   +F +M+  +  ++WNSM+SGY H +   ++  +   M + G   +  T A++
Sbjct: 641 GDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATV 700

Query: 418 LPLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           L  CA VA L+ G E H C +  RA     +++ ++LV+MYA+ G++  A   F++M  R
Sbjct: 701 LSACATVATLERGMEVHGCSV--RACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPAR 758

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           +  ++ S+I+GY   G G  +L LF +M      PDHVT V VLSACSH+GLV EG   F
Sbjct: 759 NLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHF 818

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC--QIH 594
           + M+ IYG+ P++EHF+CMVDL GR G LNK ++ + +MP  P   +W T+LGAC     
Sbjct: 819 DSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANG 878

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           RNT +G  AAE LLE  P N+  Y+L++NMYA+ G WD +AK R  MR   V+K  GC+W
Sbjct: 879 RNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSW 938

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           V   +    F+  D S+ +   IY  L  L   M+ AGY+ +  F
Sbjct: 939 VTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRF 983



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 142/546 (26%), Positives = 255/546 (46%), Gaps = 59/546 (10%)

Query: 61  TRIRITAASHDVVLDSFAHII-FCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
           +++      HD  ++S A    + CG   A    ++LH      G   +  L   L+  Y
Sbjct: 63  SQLHHNPVQHDEKIESLAQRYRYSCGSKDA----EELHLQLFKNGFVNDLFLCNTLINIY 118

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYP 179
           A      +   + +   +R  + W+ LIS Y R+    EA  ++++M S     +++ + 
Sbjct: 119 ARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFG 178

Query: 180 SVLKACGEMMD--VDFGRVVHSCIDACHEWS-LFVHNALVSMYGK-FGQVDVARRLFDKM 235
           SV++AC E  +  + FG  +H  +      + +   N L+SMYG   G VD ARR FD +
Sbjct: 179 SVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSI 238

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE----GVEVNVITWNTIAGGCLRTGNF 291
             R+ VS N+MIS Y  +G    AF +F  MQ+E    G++ N  T+ ++        N 
Sbjct: 239 WPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANS 298

Query: 292 KGVL--ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
             VL  +LL+R+  +  +L  +          +VG+                        
Sbjct: 299 GLVLLEQLLTRVE-KSGFLHDL----------YVGS------------------------ 323

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE- 408
           AL++ +++   + +A  +F+  + +++++ N ++ G       EE+  LF EM +  VE 
Sbjct: 324 ALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVEL 382

Query: 409 -PN-YVTIASILPLCARVAN-LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            PN Y+ I +  P    + N  + G E H +++R  + N  + + N L+ MYA+ G + +
Sbjct: 383 NPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAIND 442

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A  VF LM  +D VT+ S+I G     +   A+K F+EM + ++ P + TM++ LS+C+ 
Sbjct: 443 ACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCAS 502

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMW 584
            G +  G+ Q        G+   +     ++ LYG  G + + ++  + M  Y   S  W
Sbjct: 503 LGWISVGE-QLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVS--W 559

Query: 585 ATLLGA 590
            +L+GA
Sbjct: 560 NSLIGA 565



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 20/286 (6%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N LI +Y+R  DL     +F     +++++W+ ++SGYT      E+  LFR+M   G  
Sbjct: 112 NTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFM 171

Query: 409 PNYVTIASILPLCARVA--NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS-GKVPE 465
           PN+    S++  C       L+ G + H  + +    N+ +   N L+ MY  + G V  
Sbjct: 172 PNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVND-VTASNVLISMYGNALGMVDY 230

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK----NQIKPDHVTMVAVLS 521
           A+  FD +  R+ V+  S+I+ Y  +G+   A  +F  M K    + +KP+  T  +++S
Sbjct: 231 ARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLIS 290

Query: 522 A-CS--HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           A CS  +SGLV+   +Q        G    L   + +V  + +AG +  AK I  KM Y 
Sbjct: 291 ATCSLANSGLVL--LEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYR 348

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE---NSGYYVLI 621
              ++   ++G  +  R    GE A E  +E +     N   Y++I
Sbjct: 349 NVVSLNGLIIGLVRQKR----GEEAVELFMEMKDSVELNPNSYMII 390


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 196/617 (31%), Positives = 322/617 (52%), Gaps = 43/617 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I       A+A G Q+HA  + LG E   ++   L++  +   +  +A  + +N   + 
Sbjct: 209 VIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKD 268

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH- 198
            + WN +I+ +V +G   EA   +  MQ    +  + T+ SV+K+C  + ++   RV+H 
Sbjct: 269 SVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHC 328

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWK 257
             + +    +  V  AL+    K  ++D A  LF  M   +  VSW  MIS Y   G   
Sbjct: 329 KTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTD 388

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           +A  LF  M+ EGV+ N  T++TI                   +  Q     S       
Sbjct: 389 QAVNLFSLMRREGVKPNHFTYSTI-------------------LTVQHAVFIS------- 422

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
                        EIH   ++  Y +  +V  AL+  + +  ++  A  +F++   K +I
Sbjct: 423 -------------EIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVI 469

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC-ARVANLQHGKEFHCY 436
            W++ML+GY      EE+A +F ++ R G++PN  T  SI+  C A  A+++ GK+FH Y
Sbjct: 470 AWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAY 529

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            ++  + N  L + +SLV +YA+ G +  A  +F     RD V++ S+I+GY   G+ + 
Sbjct: 530 AIKLRL-NNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKK 588

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           AL++FEEM K  ++ D +T + V+SAC+H+GLV +GQ  F  M + + I P +EH++CM+
Sbjct: 589 ALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMI 648

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DLY RAG+L KA +II  MP+ P + +W  +L A ++HRN  +G+ AAEK++   P++S 
Sbjct: 649 DLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSA 708

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YVL++N+YAA G W +   VR  M    V+K PG +W++  N    FL  D S+  +  
Sbjct: 709 AYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDH 768

Query: 677 IYPLLGGLTELMKDAGY 693
           IY  L  L   ++D GY
Sbjct: 769 IYSKLSELNTRLRDVGY 785



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 134/521 (25%), Positives = 235/521 (45%), Gaps = 75/521 (14%)

Query: 108 NPVLVPKLVTFYASFSLYNN----ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           NP+L   +V   A   L ++    A  L + + +R     N L+  Y R     EAL ++
Sbjct: 31  NPLLQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLF 90

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKF 222
             +    +  D++T   VL  C    +   G  VH  C+       L V N+LV MY K 
Sbjct: 91  VSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKT 150

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G V   RR+FD+M +RD VSWN++++ Y+      + ++LF  MQ EG   +  T     
Sbjct: 151 GNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYT----- 205

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                       V+TVI   A ++ GA+ +G +IH   V+  + 
Sbjct: 206 ----------------------------VSTVI--AALANQGAVAIGMQIHALVVKLGFE 235

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFRE 401
               V N+LI+M S+   LR A ++F     K  ++WNSM++G+  ++  +  AF  F  
Sbjct: 236 TERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHV-INGQDLEAFETFNN 294

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  +G +P + T AS++  CA +  L   +  HC  L+  +     +L  +L+    +  
Sbjct: 295 MQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVL-TALMVALTKCK 353

Query: 462 KVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           ++ +A S+F LM   +  V++T++I+GY   G+   A+ LF  M +  +KP+H T   +L
Sbjct: 354 EIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL 413

Query: 521 SACSHSGLVVEGQKQ-----FERMTSI-----------------YGIFPQLEH-----FA 553
           +   H+  + E   +     +E+ +S+                   +F  +E      ++
Sbjct: 414 TV-QHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWS 472

Query: 554 CMVDLYGRAGLLNKAKEI---ITKMPYTPTSAMWATLLGAC 591
            M+  Y +AG   +A +I   +T+    P    + +++ AC
Sbjct: 473 AMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINAC 513



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 199/421 (47%), Gaps = 42/421 (9%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +AFE F  +++  A       +FA +I  C  +K L   + LH   +  GL  N  ++  
Sbjct: 287 EAFETFNNMQLAGAK--PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTA 344

Query: 115 LVTFYASFSLYNNACFLVE-NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
           L+         ++A  L      ++  + W  +IS Y+++G   +A+ ++  M+   ++ 
Sbjct: 345 LMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKP 404

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           ++FTY ++L     +    F   +H+  I   +E S  V  AL+  + K G +  A ++F
Sbjct: 405 NHFTYSTILT----VQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVF 460

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           + +  +D ++W+ M++ YA  G  +EA ++F ++  EG++ N  T+ +I   C       
Sbjct: 461 ELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINAC------- 513

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                                       +   +++ GK+ H  A++        V ++L+
Sbjct: 514 ---------------------------TAPTASVEQGKQFHAYAIKLRLNNALCVSSSLV 546

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
           T+Y++  ++  A+ +FK   E+ +++WNSM+SGY     A+++  +F EM +  +E + +
Sbjct: 547 TLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAI 606

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T   ++  CA    +  G+ +   ++     N  +  ++ ++++Y+R+G + +A  + + 
Sbjct: 607 TFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIING 666

Query: 473 M 473
           M
Sbjct: 667 M 667


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/558 (35%), Positives = 310/558 (55%), Gaps = 28/558 (5%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           WN ++S Y ++G   +A  V+ +M  +    ++ ++ ++L A      V   ++  +C+ 
Sbjct: 160 WNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAY-----VQNSKMEEACML 210

Query: 202 -DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
             +   W+L   N L+  + K  ++  AR+ FD M  RD VSWNT+I+ YA  G   EA 
Sbjct: 211 FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
           QLF    +E    +V TW  +  G ++    +   EL  +M  +    + V+    L   
Sbjct: 271 QLF----DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGY 322

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIIT 378
                +++ KE+    V  C     NV   N +IT Y++C  +  A  LF    ++  ++
Sbjct: 323 VQGERMEMAKELFD--VMPC----RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS 376

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W +M++GY+    + E+  LF +M R G   N  + +S L  CA V  L+ GK+ H  ++
Sbjct: 377 WAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 436

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   +     + N+L+ MY + G + EA  +F  M+ +D V++ ++IAGY   G G VAL
Sbjct: 437 KGG-YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVAL 495

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           + FE M +  +KPD  TMVAVLSACSH+GLV +G++ F  MT  YG+ P  +H+ACMVDL
Sbjct: 496 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDL 555

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAGLL  A  ++  MP+ P +A+W TLLGA ++H NT + E AA+K+    PENSG Y
Sbjct: 556 LGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMY 615

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+YA++G W  + K+R  MRD GV+K+PG +W++  N    F V D  + +  EI+
Sbjct: 616 VLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIF 675

Query: 679 PLLGGLTELMKDAGYVVK 696
             L  L   MK AGYV K
Sbjct: 676 AFLEELDLRMKKAGYVSK 693



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 201/448 (44%), Gaps = 45/448 (10%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           EKN V    L++ Y   S    AC L ++      + WN L+  +V+     EA   +  
Sbjct: 185 EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDS 244

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           M  R    D  ++ +++    +   +D  R +    D      +F   A+VS Y +   V
Sbjct: 245 MNVR----DVVSWNTIITGYAQSGKIDEARQL---FDESPVQDVFTWTAMVSGYIQNRMV 297

Query: 226 DVARRLFDKMLERDAVS-------------------------------WNTMISAYASKG 254
           + AR LFDKM ER+ VS                               WNTMI+ YA  G
Sbjct: 298 EEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCG 357

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF +M +     + ++W  +  G  ++G+    L L  +M  +   L+  +  
Sbjct: 358 KISEAKNLFDKMPKR----DPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFS 413

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L  C+ V AL+LGK++HG  V+G Y     V NAL+ MY +C  +  A  LFK  A K
Sbjct: 414 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK 473

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            I++WN+M++GY+     E +   F  M R G++P+  T+ ++L  C+    +  G+++ 
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE 493
             + +      +   +  +V++  R+G + +A ++   M    D   + +L+    + G 
Sbjct: 534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGN 593

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             +A    +++    ++P++  M  +LS
Sbjct: 594 TELAETAADKI--FAMEPENSGMYVLLS 619



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 127/472 (26%), Positives = 219/472 (46%), Gaps = 55/472 (11%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN+ IS Y+R G   EAL V+K+M     R  + +Y  ++   G + + +F  +     D
Sbjct: 67  WNVAISSYMRTGRCNEALRVFKRMP----RWSSVSYNGMIS--GYLRNGEF-ELARKLFD 119

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              E  L   N ++  Y +   +  AR LF+ M ERD  SWNTM+S YA  G   +A  +
Sbjct: 120 EMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSV 179

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATVIGLGACS 321
           F  M E+    N ++WN +    ++    +    L    +++E + L S   ++G     
Sbjct: 180 FDRMPEK----NDVSWNALLSAYVQNSKMEEACMLF---KSRENWALVSWNCLLG----- 227

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVR-----NALITMYSRCKDLRHAYILFKMTAEKSI 376
             G +K  K +        + +  NVR     N +IT Y++   +  A  LF  +  + +
Sbjct: 228 --GFVKKKKIVEARQ----FFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV 281

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
            TW +M+SGY      EE+    RE+F    E N V+  ++L    +   ++  KE    
Sbjct: 282 FTWTAMVSGYIQNRMVEEA----RELFDKMPERNEVSWNAMLAGYVQGERMEMAKE---- 333

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            L   M   ++  WN+++  YA+ GK+ EAK++FD M +RD V++ ++IAGY   G    
Sbjct: 334 -LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFE 392

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           AL+LF +M +   + +  +  + LS C+    +  G++   R+  + G +       C V
Sbjct: 393 ALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL--VKGGYET----GCFV 446

Query: 557 D-----LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
                 +Y + G + +A ++  +M      + W T++     H   G GE A
Sbjct: 447 GNALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRH---GFGEVA 494



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 41/236 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+  +  C  V AL  GKQLH   +  G E    +   L+  Y        A  L +  
Sbjct: 411 SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 470

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I+ Y R GF   AL  ++ M+   ++ D+ T  +VL AC     VD GR
Sbjct: 471 AGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGR 530

Query: 196 VVHSCIDACHEWSLFVHNA----LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
                +    ++ +  ++     +V + G+ G ++ A  L   M  E DA  W T++ A 
Sbjct: 531 QYFYTM--TQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGAS 588

Query: 250 ---------------------------------YASKGLWKEAFQLFVEMQEEGVE 272
                                            YAS G W +  +L V M+++GV+
Sbjct: 589 RVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 644


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 213/621 (34%), Positives = 324/621 (52%), Gaps = 60/621 (9%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF----LVENSNIRYPL 141
           K   ++Q KQ+HA  +   L  +P    K+V F A   L+++       LV N  I  P 
Sbjct: 49  KCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCA---LHDSGSLPYARLVFN-QIPNPT 104

Query: 142 PW--NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            +  N +I  Y       +A+  Y+ M  + +  D FT+PS+ K+CG + +   G+ +H 
Sbjct: 105 TFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLH- 160

Query: 200 CIDACHEWSL------FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
               CH   L      ++ N L++MY   G +  AR++FDKM+ +  VSW TMI AYA  
Sbjct: 161 ----CHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 216

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
            L  EA +LF  M+   V+ N IT   +                                
Sbjct: 217 DLPHEAIKLFRRMEIASVKPNEITLVNV-------------------------------- 244

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC+    L+  K++H        G +  + +AL+ +Y +C     A  LF    E
Sbjct: 245 ---LTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPE 301

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K++  WN M++G+      EE+  LF EM  SGV+ + VT+AS+L  C  +  L+ GK  
Sbjct: 302 KNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWL 361

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H YI  +      + L  +LV+MYA+ G +  A  VF  M  +D +T+T+LI G  + G+
Sbjct: 362 HVYI-EKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ 420

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  AL+LF EM  +++KPD +T V VL+ACSH+GLV EG   F  M + YGI P +EH+ 
Sbjct: 421 GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 480

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVD+ GRAG + +A+++I  MP  P   +   LL AC+IH N  + E AA++L+E  P+
Sbjct: 481 CMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPK 540

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N G YVL++N+Y++   W+   K+R  M +  ++K PGC+ ++ G V   F+  D S+ Q
Sbjct: 541 NGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQ 600

Query: 674 AQEIYPLLGGLTELMKDAGYV 694
           + EIY  L  +   +K AGYV
Sbjct: 601 SSEIYETLDDMMRRLKSAGYV 621



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 3/236 (1%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A + F R+ I +   + +  +  +++  C + + L   KQ+H      G+  + VL   
Sbjct: 221 EAIKLFRRMEIASVKPNEI--TLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSA 278

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  Y     Y  A  L      +    WN++I+ +V D  Y EAL ++ +MQ   ++GD
Sbjct: 279 LMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 338

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFD 233
             T  S+L AC  +  ++ G+ +H  I+    E  + +  ALV MY K G ++ A R+F 
Sbjct: 339 KVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQ 398

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +M E+D ++W  +I   A  G   +A +LF EMQ   V+ + IT+  +   C   G
Sbjct: 399 EMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAG 454



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 4/187 (2%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
            +  +A   F  ++++    D V  + A ++  C  + AL  GK LH       +E +  
Sbjct: 318 SDYEEALSLFNEMQLSGVKGDKV--TMASLLIACTHLGALELGKWLHVYIEKEKIEVDVA 375

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L   LV  YA      +A  + +    +  + W  LI      G   +AL ++ +MQ   
Sbjct: 376 LGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSE 435

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVA 228
           ++ D  T+  VL AC     V+ G    + +   +  + S+  +  +V M G+ G++  A
Sbjct: 436 VKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEA 495

Query: 229 RRLFDKM 235
             L   M
Sbjct: 496 EDLIQNM 502


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/603 (32%), Positives = 317/603 (52%), Gaps = 41/603 (6%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G Q+HA  +  G E+   +   L++ Y+   +  +A  + +   IR  + WN +I+ YVR
Sbjct: 213 GLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVR 272

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFV 211
           +G   E   ++ +MQ   ++  + T+ SV+K+C  + ++   +++    + +       V
Sbjct: 273 NGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV 332

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
             AL+    K  ++D A  LF  M                                EEG 
Sbjct: 333 ITALMVALSKCKEMDDALSLFSLM--------------------------------EEGK 360

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             NV++W  +  GCL+ G     + L S+MR +    +         A   V       E
Sbjct: 361 --NVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFT----YSAILTVHYPVFVSE 414

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H   ++  Y    +V  AL+  Y +  +   A  +F++   K ++ W++ML+GY     
Sbjct: 415 MHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGE 474

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCAR-VANLQHGKEFHCYILRRAMFNEHLLLW 450
            EE+A LF ++ + G++PN  T +S++  CA   A  + GK+FH Y ++  + N  L + 
Sbjct: 475 TEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRL-NNALCVS 533

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           ++LV MYA+ G +  A  VF     RD V++ S+I+GY   G+ + AL++F+EM K  + 
Sbjct: 534 SALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMD 593

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
            D VT + V++AC+H+GLV +GQK F  M + + I P ++H++CM+DLY RAG+L KA  
Sbjct: 594 VDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMG 653

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
           II +MP+ P + +W TLLGA ++HRN  +GE AAEKL+  +PE+S  YVL++NMYAA G 
Sbjct: 654 IINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGN 713

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           W +   VR  M    V+K PG +W++  N    FL  D ++  + +IY  L  L+  +KD
Sbjct: 714 WQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKD 773

Query: 691 AGY 693
           AGY
Sbjct: 774 AGY 776



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 181/385 (47%), Gaps = 48/385 (12%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N L+  Y RD    EAL ++  +    ++ D  T   V   C   +D   GR VH     
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHC---Q 118

Query: 204 CHEWSLFVH----NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
           C ++ L  H     +LV MY K   V+  RR+FD+M ER                     
Sbjct: 119 CVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGER--------------------- 157

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD--SVATVIGL 317
                         NV++W ++  G    G +  V EL  +M+ +    +  +V+TVI  
Sbjct: 158 --------------NVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIA- 202

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            A  + G + +G ++H   V+  + E   V N+LI++YSR   LR A  +F     +  +
Sbjct: 203 -ALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWV 261

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           TWNSM++GY       E   +F +M  +GV+P ++T AS++  CA +  L   K   C  
Sbjct: 262 TWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKA 321

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRV 496
           L+     + +++  +L+   ++  ++ +A S+F LM   ++ V++T++I+G    G    
Sbjct: 322 LKSGFTTDQIVI-TALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQ 380

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLS 521
           A+ LF +M +  +KP+H T  A+L+
Sbjct: 381 AVNLFSQMRREGVKPNHFTYSAILT 405



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 206/432 (47%), Gaps = 48/432 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G   + FE F ++++       +  +FA +I  C  ++ LA  K +   A+  G  
Sbjct: 270 YVRNGQDLEVFEIFNKMQLAGVKPTHM--TFASVIKSCASLRELALVKLMQCKALKSGFT 327

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLV----ENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            + +++  L+   +     ++A  L     E  N+   + W  +IS  +++G   +A+ +
Sbjct: 328 TDQIVITALMVALSKCKEMDDALSLFSLMEEGKNV---VSWTAMISGCLQNGGNDQAVNL 384

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           + QM+   ++ ++FTY ++L     +    F   +H+  I   +E S  V  AL+  Y K
Sbjct: 385 FSQMRREGVKPNHFTYSAILTVHYPV----FVSEMHAEVIKTNYERSSSVGTALLDAYVK 440

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G    A ++F+ +  +D ++W+ M++ YA  G  +EA +LF ++ +EG++ N  T++++
Sbjct: 441 LGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSV 500

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
              C                                   S   A + GK+ H  A++   
Sbjct: 501 INAC----------------------------------ASPTAAAEQGKQFHAYAIKMRL 526

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V +AL+TMY++  ++  A+ +FK   E+ +++WNSM+SGY+    A+++  +F E
Sbjct: 527 NNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDE 586

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M +  ++ + VT   ++  C     ++ G+++   ++     N  +  ++ ++++Y+R+G
Sbjct: 587 MQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAG 646

Query: 462 KVPEAKSVFDLM 473
            + +A  + + M
Sbjct: 647 MLEKAMGIINEM 658



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 38/300 (12%)

Query: 227 VARRLFDKMLERDAV--SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +A  LFDK+  R       N ++ +Y+     KEA  LFV +                  
Sbjct: 43  IAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSL------------------ 84

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                       L S ++  E+ L  V  +     C+     KLG+++H   V+    ++
Sbjct: 85  ------------LHSSLQPDESTLSCVFNI-----CAGSLDGKLGRQVHCQCVKFGLVDH 127

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
            +V  +L+ MY + +++     +F    E+++++W S+L+GY+          LF +M  
Sbjct: 128 VSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQY 187

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            GV PN  T+++++        +  G + H  +++   F E + ++NSL+ +Y+R G + 
Sbjct: 188 EGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHG-FEEAIPVFNSLISLYSRLGMLR 246

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           +A+ VFD M  RD VT+ S+IAGY   G+     ++F +M    +KP H+T  +V+ +C+
Sbjct: 247 DARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCA 306



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N +L  Y+     +E+  LF  +  S ++P+  T++ +  +CA   + + G++ HC  ++
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVK 121

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             +  +H+ +  SLV+MY ++  V + + VFD M  R+ V++TSL+AGY   G      +
Sbjct: 122 FGLV-DHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWE 180

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           LF +M    + P+  T+  V++A  + G+V  G  Q   M   +G    +  F  ++ LY
Sbjct: 181 LFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGL-QVHAMVVKHGFEEAIPVFNSLISLY 239

Query: 560 GRAGLLNKAKEIITKM 575
            R G+L  A+++  KM
Sbjct: 240 SRLGMLRDARDVFDKM 255



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 7/216 (3%)

Query: 76  SFAHIIFCCGKVKALA-QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +F+ +I  C    A A QGKQ HA AI + L     +   LVT YA     ++A  + + 
Sbjct: 496 TFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKR 555

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
              R  + WN +IS Y + G   +AL V+ +MQ R +  D  T+  V+ AC     V+ G
Sbjct: 556 QKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKG 615

Query: 195 -RVVHSCIDACHEWSLFVH-NALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA-- 249
            +  +S I+  H      H + ++ +Y + G ++ A  + ++M     A  W T++ A  
Sbjct: 616 QKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAAR 675

Query: 250 -YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
            + +  L + A +  + +Q E     V+  N  A  
Sbjct: 676 VHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAA 711


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/644 (30%), Positives = 330/644 (51%), Gaps = 43/644 (6%)

Query: 57   FEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
            F+   ++ IT  S+     +F+ I+ C   +  + + K++H C   LG      +V  L+
Sbjct: 541  FKKMQKLGITGNSY-----TFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLI 595

Query: 117  TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
              Y      ++A  L +    R  + WN +IS  V +GF   AL  + QM   R+  D  
Sbjct: 596  ATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLA 655

Query: 177  TYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
            T  + + AC  +  +  GR +H   + AC    +  +N L+ MY K G ++         
Sbjct: 656  TLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLN--------- 706

Query: 236  LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
                                  +A Q F +M ++     V++W ++    +R G +   +
Sbjct: 707  ----------------------DAIQAFEKMGQK----TVVSWTSLIAAYVREGLYDDAI 740

Query: 296  ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
             L   M ++    D  +    L AC+   +L  G+++H    +        V NAL+ MY
Sbjct: 741  RLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMY 800

Query: 356  SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
            ++C  +  AY++F     K I++WN+M+ GY+      E+  LF EM +    P+ +T+A
Sbjct: 801  AKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMA 859

Query: 416  SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
             +LP C  +A L+ G+  H  ILR   ++  L + N+L++MY + G +  A+ +FD++  
Sbjct: 860  CLLPACGSLAALEIGRGIHGCILRNG-YSSELHVANALIDMYVKCGSLVHARLLFDMIPE 918

Query: 476  RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            +D +T+T +I+G G+ G G  A+  F++M    IKPD +T  ++L ACSHSGL+ EG   
Sbjct: 919  KDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGF 978

Query: 536  FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
            F  M S   + P+LEH+ACMVDL  R G L+KA  +I  MP  P + +W  LL  C+IH 
Sbjct: 979  FNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHH 1038

Query: 596  NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
            +  + E  AE + E  P+N+GYYVL+AN+YA    W+++ K+R  +   G++K PGC+W+
Sbjct: 1039 DVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWI 1098

Query: 656  DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            +    F+ F+  DT++ QA+ I+ LL  L   MK+ G+  K  +
Sbjct: 1099 EVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRY 1142



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 166/582 (28%), Positives = 278/582 (47%), Gaps = 69/582 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   G+L  A E    +R++  S ++ L++++ I+  C + K L +GK +H+   + G+ 
Sbjct: 428 FCEVGDLRNAVEL---LRMSQKS-ELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIP 483

Query: 107 KNPVLVPKLVTFYASFS------------LYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
              VL  KLV  Y S              L +N  FL           WNL++S Y + G
Sbjct: 484 IEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFL-----------WNLMMSEYAKIG 532

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-FVHN 213
            Y E++ ++K+MQ   I G+++T+  +LK    +  V   + +H C+      S   V N
Sbjct: 533 DYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVN 592

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           +L++ Y K G+VD A +LFD++ +RD VSWN+MIS     G    A + FV+M       
Sbjct: 593 SLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQML------ 646

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                       LR G                  +D    V  + AC++VG+L LG+ +H
Sbjct: 647 -----------ILRVG------------------VDLATLVNSVAACANVGSLSLGRALH 677

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G  V+ C+       N L+ MYS+C +L  A   F+   +K++++W S+++ Y      +
Sbjct: 678 GQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYD 737

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           ++  LF EM   GV P+  ++ S+L  CA   +L  G++ H YI R+      L + N+L
Sbjct: 738 DAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYI-RKNNMALCLPVSNAL 796

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MYA+ G + EA  VF  +  +D V++ ++I GY        ALKLF EM K + +PD 
Sbjct: 797 MDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK-ESRPDG 855

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           +TM  +L AC  S   +E  +         G   +L     ++D+Y + G L  A+ +  
Sbjct: 856 ITMACLLPACG-SLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFD 914

Query: 574 KMPYTPTSAMWATLLGACQIH--RNTGIGEWAAEKLLETRPE 613
            +P       W  ++  C +H   N  I  +   ++   +P+
Sbjct: 915 MIPEKDL-ITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPD 955


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 195/600 (32%), Positives = 333/600 (55%), Gaps = 36/600 (6%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           +HA    LG + +  +   L+  Y+     + A  + +    +  + W  +++ Y  +  
Sbjct: 126 VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYC 185

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNA 214
           + ++L ++ QM+    R +NFT  + LK+C  +     G+ VH C +  C++  L+V  A
Sbjct: 186 HEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIA 245

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+ +Y K G++  A++ F++M + D + W+ MIS YA     KEA +LF  M++  V V 
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVV- 304

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
                          NF                  + A+V  L AC+ +  L LG +IH 
Sbjct: 305 -------------PNNF------------------TFASV--LQACASLVLLNLGNQIHS 331

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             ++        V NAL+ +Y++C ++ ++  LF  + EK+ + WN+++ GY  L   E+
Sbjct: 332 CVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEK 391

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  LF  M    ++P  VT +S+L   A +  L+ G++ H   + + M+N+  ++ NSL+
Sbjct: 392 ALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTI-KTMYNKDSVVANSLI 450

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MYA+ G++ +A+  FD M ++DEV++ +LI GY I G G  AL LF+ M ++  KP+ +
Sbjct: 451 DMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKL 510

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           T V VLSACS++GL+ +G+  F+ M   YGI P +EH+ CMV L GR+G  ++A ++I +
Sbjct: 511 TFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGE 570

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           +P+ P+  +W  LLGAC IH+N  +G+  A+++LE  P++   +VL++NMYA    WD +
Sbjct: 571 IPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNV 630

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           A VR  M+   V+K PG +WV+   V   F V DTS+   + I+ +L  L +  +DAGYV
Sbjct: 631 AYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYV 690



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 141/563 (25%), Positives = 250/563 (44%), Gaps = 50/563 (8%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           GK LH   +  G   +      L+  Y  F    +A  L +   +   + +  L   + R
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFV 211
              +  A  +  ++       + F + ++LK    M   D    VH+ +    H+   FV
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFV 141

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
             AL+  Y   G VD AR++FD +  +D VSW  M++ YA     +++  LF +M+  G 
Sbjct: 142 GTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGY 201

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             N  T +                                     L +C+ + A K+GK 
Sbjct: 202 RPNNFTISA-----------------------------------ALKSCNGLEAFKVGKS 226

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +HG A++ CY     V  AL+ +Y++  ++  A   F+   +  +I W+ M+S Y   D 
Sbjct: 227 VHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDK 286

Query: 392 AEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
           ++E+  LF  M +S  V PN  T AS+L  CA +  L  G + H  +L+  + + ++ + 
Sbjct: 287 SKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGL-DSNVFVS 345

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+L+++YA+ G++  +  +F   + ++EV + ++I GY   G+G  AL LF  M    I+
Sbjct: 346 NALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQ 405

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAK 569
           P  VT  +VL A S S + +E  +Q   +T I  ++ +    A  ++D+Y + G ++ A+
Sbjct: 406 PTEVTYSSVLRA-SASLVALEPGRQIHSLT-IKTMYNKDSVVANSLIDMYAKCGRIDDAR 463

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG----YYVLIANMY 625
               KM        W  L+    IH   G+G  A       +  NS      +V + +  
Sbjct: 464 LTFDKMD-KQDEVSWNALICGYSIH---GLGMEALNLFDMMQQSNSKPNKLTFVGVLSAC 519

Query: 626 AATGCWDK-LAKVRTCMRDLGVR 647
           +  G  DK  A  ++ ++D G+ 
Sbjct: 520 SNAGLLDKGRAHFKSMLQDYGIE 542



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 183/385 (47%), Gaps = 37/385 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  ++A   GK +H CA+ +  +++  +   L+  Y        A    E       +PW
Sbjct: 215 CNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPW 274

Query: 144 NLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           +L+IS Y +     EAL ++ +M QS  +  +NFT+ SVL+AC  ++ ++ G  +HSC+ 
Sbjct: 275 SLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVL 334

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               + ++FV NAL+ +Y K G+++ + +LF    E++ V+WNT+I  Y   G  ++A  
Sbjct: 335 KVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALN 394

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF  M    ++   +T++++                                   L A +
Sbjct: 395 LFSNMLGLDIQPTEVTYSSV-----------------------------------LRASA 419

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            + AL+ G++IH   ++  Y +   V N+LI MY++C  +  A + F    ++  ++WN+
Sbjct: 420 SLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNA 479

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++ GY+      E+  LF  M +S  +PN +T   +L  C+    L  G+     +L+  
Sbjct: 480 LICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDY 539

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEA 466
                +  +  +V +  RSG+  EA
Sbjct: 540 GIEPCIEHYTCMVWLLGRSGQFDEA 564



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 131/260 (50%), Gaps = 13/260 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
           +A      +A E F R+R ++    VV +  +FA ++  C  +  L  G Q+H+C + +G
Sbjct: 281 YAQSDKSKEALELFCRMRQSSV---VVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVG 337

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           L+ N  +   L+  YA      N+  L   S  +  + WN +I  YV+ G   +AL ++ 
Sbjct: 338 LDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFS 397

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
            M    I+    TY SVL+A   ++ ++ GR +HS  I   +     V N+L+ MY K G
Sbjct: 398 NMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCG 457

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++D AR  FDKM ++D VSWN +I  Y+  GL  EA  LF  MQ+   + N +T+  +  
Sbjct: 458 RIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLS 517

Query: 284 GCLRTG-------NFKGVLE 296
            C   G       +FK +L+
Sbjct: 518 ACSNAGLLDKGRAHFKSMLQ 537



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 196/437 (44%), Gaps = 53/437 (12%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACH------EWSLFVHNALVSMYGKFGQVDV 227
           D+ +Y ++L+      D + G+ +H     CH         LF  N L++ Y  FG ++ 
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLH-----CHILKHGASLDLFAQNILLNTYVHFGFLED 56

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A +LFD+M   + VS+ T+   ++    ++ A +L + +  EG EVN   + T+      
Sbjct: 57  ASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTL------ 110

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                  L+LL  M   +T L   A V  LG   H     +G                  
Sbjct: 111 -------LKLLVSMDLADTCLSVHAYVYKLG---HQADAFVG------------------ 142

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
             ALI  YS C ++  A  +F     K +++W  M++ Y    C E+S  LF +M   G 
Sbjct: 143 -TALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGY 201

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN  TI++ L  C  +   + GK  H   L +  ++  L +  +L+E+Y +SG++ EA+
Sbjct: 202 RPNNFTISAALKSCNGLEAFKVGKSVHGCAL-KVCYDRDLYVGIALLELYTKSGEIAEAQ 260

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHS 526
             F+ M + D + ++ +I+ Y    + + AL+LF  M ++  + P++ T  +VL AC+  
Sbjct: 261 QFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASL 320

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
            L+  G  Q        G+   +     ++D+Y + G +  + ++ T        A    
Sbjct: 321 VLLNLG-NQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTI 379

Query: 587 LLGACQIHRNTGIGEWA 603
           ++G  Q+    G GE A
Sbjct: 380 IVGYVQL----GDGEKA 392


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 303/557 (54%), Gaps = 39/557 (7%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVH- 198
           L WN ++  +V       AL  Y +M  R R   D FT+PS+LK C  +++   G+V+H 
Sbjct: 44  LTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHG 103

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +       L++   L++MY   G +  AR LF++M  R+ V W +MIS Y       E
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  L+ +M+E+G   + +T  T+   C    +    ++L S +R  +     +  V+G  
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDM---KICAVLG-- 218

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
                                         +AL+ MY++C DL+ A  +F   ++K +  
Sbjct: 219 ------------------------------SALVNMYAKCGDLKTARQVFDQLSDKDVYA 248

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           W++++ GY   + + E+  LFRE+   S + PN VTI +++  CA++ +L+ G+  H YI
Sbjct: 249 WSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI 308

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
             R      + L NSL++M+++ G +  AK +FD MS +D +++ S++ G  + G GR A
Sbjct: 309 -TRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREA 367

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L  F  M    ++PD +T + VL+ACSH+GLV EG+K F  + ++YG+  + EH+ CMVD
Sbjct: 368 LAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVD 427

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L  RAGLL +A+E I  MP  P  A+W ++LGAC+++ N  +GE AA  LLE  P N G 
Sbjct: 428 LLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGV 487

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           Y+L++N+YA    W+++ KVR  M + G++K PGC+ V   N+   FL  D S+ +  EI
Sbjct: 488 YILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEI 547

Query: 678 YPLLGGLTELMKDAGYV 694
             +L  + E +K  GYV
Sbjct: 548 SIMLRQVREKLKLVGYV 564



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 189/404 (46%), Gaps = 45/404 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  +     GK LH   +   L  +  +   L+  YA+     +A FL E  
Sbjct: 81  TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERM 140

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +IS Y+++    EAL +YK+M+      D  T  +++ AC E+ D+  G 
Sbjct: 141 GHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGM 200

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS I +   +    + +ALV+MY K G +  AR++FD++ ++D  +W+ +I  Y    
Sbjct: 201 KLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNN 260

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA QLF E               +AGG              S MR  E  + +V   
Sbjct: 261 RSTEALQLFRE---------------VAGG--------------SNMRPNEVTILAV--- 288

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + AC+ +G L+ G+ +H    R   G   ++ N+LI M+S+C D+  A  +F   + K
Sbjct: 289 --ISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK 346

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +I+WNSM++G        E+   F  M  + ++P+ +T   +L  C+    +Q GK+  
Sbjct: 347 DLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLF 406

Query: 435 CYILRRAMF-----NEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             I   A++     +EH   +  +V++  R+G + EA+    +M
Sbjct: 407 YEI--EALYGVRLKSEH---YGCMVDLLCRAGLLAEAREFIRVM 445



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 189/404 (46%), Gaps = 52/404 (12%)

Query: 210 FVH-----NALVSMYGKFGQVDV--ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           F+H     N L++     G + V  A  +F      D ++WN+M+ A+ +  + + A Q 
Sbjct: 6   FIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQS 65

Query: 263 FVEMQEEGVEV-NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           + EM E    V +  T+ ++  GC     FK                             
Sbjct: 66  YTEMLERSRNVPDRFTFPSLLKGCALLLEFK----------------------------- 96

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
                 +GK +HG  V+        +   L+ MY+ C DL+ A  LF+    ++ + W S
Sbjct: 97  ------VGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+SGY    C  E+  L+++M   G  P+ VT+A+++  CA + +L  G + H +I R  
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI-REM 209

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
                 +L ++LV MYA+ G +  A+ VFD +S +D   +++LI GY        AL+LF
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLF 269

Query: 502 EEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY-GIFPQLEHFACMVDLY 559
            E+   + ++P+ VT++AV+SAC+  G +  G+   + +T    G    L +   ++D++
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNN--SLIDMF 327

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
            + G ++ AK I   M Y    + W +++    +H   G+G  A
Sbjct: 328 SKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGLALH---GLGREA 367


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 203/656 (30%), Positives = 347/656 (52%), Gaps = 46/656 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAI 101
           L+     G+ +KA   +  +      H V  D++ +  ++  C  + AL  G+ +H    
Sbjct: 105 LRGLVAVGHFTKAIHFYHSM----LQHGVTPDNYTYPLVLKACSSLHALQLGRWVHE--T 158

Query: 102 ALGLEKNPVLVP-KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
             G  K  V V   ++  +A      +A  + E    R    W  LI   + +G   EAL
Sbjct: 159 MHGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEAL 218

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMY 219
            ++++M+S  +  D+    S+L ACG +  V  G  +  C + +  E  L+V NA++ MY
Sbjct: 219 LLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMY 278

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G    A R+F  M+  D VSW+T+I+ Y+   L++E+++L++ M   G+  N I   
Sbjct: 279 CKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAI--- 335

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
                                          VAT + L A   +  LK GKE+H   ++ 
Sbjct: 336 -------------------------------VATSV-LPALGKLELLKQGKEMHNFVLKE 363

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                  V +ALI MY+ C  ++ A  +F+ T++K I+ WNSM+ GY  +   E + F F
Sbjct: 364 GLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTF 423

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R ++ +   PN++T+ SILP+C ++  L+ GKE H Y+ +  +   ++ + NSL++MY++
Sbjct: 424 RRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGL-GLNVSVGNSLIDMYSK 482

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +   + VF  M  R+  TY ++I+  G  G+G   L  +E+M +   +P+ VT +++
Sbjct: 483 CGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISL 542

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           LSACSH+GL+  G   +  M + YGI P +EH++CMVDL GRAG L+ A + IT+MP TP
Sbjct: 543 LSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTP 602

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
            + ++ +LLGAC++H    + E  AE++L+ + ++SG+YVL++N+YA+   W+ ++KVR+
Sbjct: 603 DANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRS 662

Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
            ++D G+ K PG +W+  G+    F      +    +I   L  L  +MK   Y++
Sbjct: 663 MIKDKGLEKKPGSSWIQVGHCIYVFHATSAFHPAFAKIEETLNSLLLVMKSEDYML 718



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/541 (26%), Positives = 256/541 (47%), Gaps = 47/541 (8%)

Query: 90  LAQGKQLHACAIALGL-----EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL-PW 143
           L + + LHA  + LG        +     +LV  Y +F    +A FL   +    P+  W
Sbjct: 43  LHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHA-FLTFRALPHKPIIAW 101

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N ++   V  G + +A+  Y  M    +  DN+TYP VLKAC  +  +  GR VH  +  
Sbjct: 102 NAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHETMHG 161

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             + +++V  A++ M+ K G V+ ARR+F++M +RD  SW  +I      G   EA  LF
Sbjct: 162 KTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLF 221

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            +M+ EG+                                     DSV     L AC  +
Sbjct: 222 RKMRSEGL-----------------------------------MPDSVIVASILPACGRL 246

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
            A+KLG  +   AVR  +     V NA+I MY +C D   A+ +F       +++W++++
Sbjct: 247 EAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLI 306

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           +GY+     +ES  L+  M   G+  N +   S+LP   ++  L+ GKE H ++L+  + 
Sbjct: 307 AGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLM 366

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           ++ +++ ++L+ MYA  G + EA+S+F+  S +D + + S+I GY + G+   A   F  
Sbjct: 367 SD-VVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRR 425

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           +   + +P+ +T+V++L  C+  G + +G K+     +  G+   +     ++D+Y + G
Sbjct: 426 IWGAEHRPNFITVVSILPICTQMGALRQG-KEIHGYVTKSGLGLNVSVGNSLIDMYSKCG 484

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE--TRPENSGYYVLI 621
            L   +++  +M     +  + T++ AC  H     G    E++ E   RP    +  L+
Sbjct: 485 FLELGEKVFKQMMVRNVTT-YNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLL 543

Query: 622 A 622
           +
Sbjct: 544 S 544



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 10/185 (5%)

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS----LVEMYARSGKVP 464
           P + T+ S   L     NL   +  H  +L    F       +S    LV +Y   G + 
Sbjct: 26  PIHFTVTSFHRL-KSPPNLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQ 84

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A   F  +  +  + + +++ G    G    A+  +  M ++ + PD+ T   VL ACS
Sbjct: 85  HAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACS 144

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFAC-MVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
               +  G+   E M   +G      +  C ++D++ + G +  A+ +  +MP     A 
Sbjct: 145 SLHALQLGRWVHETM---HGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMP-DRDLAS 200

Query: 584 WATLL 588
           W  L+
Sbjct: 201 WTALI 205


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/658 (29%), Positives = 350/658 (53%), Gaps = 39/658 (5%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
           ++ +  ++ +     L +  + F+R+      H++    F  I+     V+       LH
Sbjct: 7   VSFVTLIQGYVQSFQLDEVVDLFSRVH--REGHELNPFVFTTILKLLVSVECAELAYSLH 64

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
           AC   LG E N  +   L+  YA     N+A    +    +  + W  +++ Y  +  + 
Sbjct: 65  ACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQ 124

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALV 216
           ++L ++ +M+      ++FT+  VLKAC  +     G+ VH C+   C+E  L+V   L+
Sbjct: 125 DSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLL 184

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            +Y KFG  +   R+F++M + D + W+ MIS YA     +EA +LF +M+   V  N  
Sbjct: 185 DLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQF 244

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           T+ ++                                   L +C+ +  L+LGK++H   
Sbjct: 245 TFASV-----------------------------------LQSCASIENLQLGKQVHCHV 269

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++        V NAL+ +Y++C  L ++  LF     ++ +TWN+M+ GY      +++ 
Sbjct: 270 LKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKAL 329

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            L++ M    V+ + VT +S+L  CA +A ++ G + H   L + ++++ +++ N+L++M
Sbjct: 330 SLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSL-KTIYDKDVVVGNALIDM 388

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G +  A+ VFD++S RDE+++ ++I+GY + G    ALK F+ M + +  P+ +T 
Sbjct: 389 YAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTF 448

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           V++LSACS++GL+  GQ  F+ M   YGI P +EH+ CMV L GR+G L+KA ++I ++P
Sbjct: 449 VSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIP 508

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             P   +W  LLGAC IH +  +G  +A+++L+  P++   +VL++N+YA T  W+ +A 
Sbjct: 509 LEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVAS 568

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           VR  M++ GV+K PG +W++   +   F V DTS+   + I  +L  L    + AGYV
Sbjct: 569 VRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYV 626



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 150/354 (42%), Gaps = 38/354 (10%)

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M +R+ VS+ T+I  Y       E   LF  +  EG E+N   + TI             
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTI------------- 47

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L+LL  +   E           L    H    KLG E +             V  ALI  
Sbjct: 48  LKLLVSVECAE-----------LAYSLHACIYKLGHESNAF-----------VGTALIDA 85

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y+ C  +  A   F   A K +++W  M++ Y   D  ++S  LF EM   G  PN+ T 
Sbjct: 86  YAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTF 145

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           A +L  C  +     GK  H  +L+   +   L +   L+++Y + G   +   VF+ M 
Sbjct: 146 AGVLKACIGLEAFSVGKSVHGCVLKTC-YEMDLYVGVGLLDLYTKFGDANDVLRVFEEMP 204

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           + D + ++ +I+ Y    + R A++LF +M +  + P+  T  +VL +C+    +  G K
Sbjct: 205 KHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLG-K 263

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           Q        G+   +     ++D+Y + G L+ + ++  ++P       W T++
Sbjct: 264 QVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP-NRNEVTWNTMI 316


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 317/585 (54%), Gaps = 38/585 (6%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           +  I+  C + + L QG  +H+  I  G + N  L  KL+ FY  F    NA  + +   
Sbjct: 40  YMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMP 99

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + W   IS Y ++G Y +AL V+ QM    +R + FTY SVL+AC  +  ++ G  
Sbjct: 100 ERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQ 159

Query: 197 VHSCIDACHE-WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H CI       +LFV +ALV ++ K G ++ AR LF+ M ERD VSWN +I  YA++  
Sbjct: 160 IHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDF 219

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             ++F++F  M  EGV  +  T  ++     R  N   V +                   
Sbjct: 220 NDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQ------------------- 260

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
                           IHG  ++  +G + ++  +LI  Y++ + ++ A  L+K   +K 
Sbjct: 261 ----------------IHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKD 304

Query: 376 IITWNSMLSGYTH-LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           +I++ ++++GY      + E+  LF++M    +E + VT  ++L +CA +A+L  G++ H
Sbjct: 305 VISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIH 364

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              ++    +  +   N+LV+MYA+SG++ +A   F  M  ++ +++TSLI GYG  G G
Sbjct: 365 ALAIKYKP-SYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYG 423

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             A+ L+++M    +KP+ +T +++L ACSHSGL  EG + F  M + Y I P+ EH++C
Sbjct: 424 HEAIALYKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSC 483

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           M+DL+ R G L +A  +I KM   P S++W  +LGAC I+ +  +GE AA  LL   PEN
Sbjct: 484 MIDLFARGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPEN 543

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659
           S  YV++A +YAA+G WDK  ++R  M    ++KIPG + + + N
Sbjct: 544 SANYVVLAGIYAASGSWDKACRMRNLMEYRSLKKIPGYSIIQSTN 588



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 129/255 (50%), Gaps = 9/255 (3%)

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
           T+L S   +  L  C     LK G  IH   +R  +    ++   LI  Y +  +  +A 
Sbjct: 33  THLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINAR 92

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F    E+++++W + +SGY      +++  +F +M R+GV  N  T  S+L  C  + 
Sbjct: 93  KVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLR 152

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            L+ G + H  I ++  F  +L + ++LV+++++ G + +A+ +F+ MS RD V++ ++I
Sbjct: 153 CLERGMQIHGCI-QKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVI 211

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
            GY  Q     + ++F  M    + PD  T+ +VL A S +  ++       ++  I+GI
Sbjct: 212 GGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLI-------KVCQIHGI 264

Query: 546 FPQLEHFACMVDLYG 560
             QL  F   +DL G
Sbjct: 265 IIQLG-FGSHIDLNG 278



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 32/210 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  + +L+ G+Q+HA AI      +      LV  YA      +A       
Sbjct: 343 TFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAFYEM 402

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + W  LI+ Y + G+  EA+ +YK+M+   ++ ++ T+ S+L AC          
Sbjct: 403 KEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFACS--------- 453

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
             HS +     W  F  N +++ Y               +L R A  ++ MI  +A  G 
Sbjct: 454 --HSGLTG-EGWECF--NNMITKY--------------NILPR-AEHYSCMIDLFARGGQ 493

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            +EA+ +  +M    ++ N   W  I G C
Sbjct: 494 LEEAYNMICKMN---IKPNSSLWGAILGAC 520


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 312/561 (55%), Gaps = 50/561 (8%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           +N +IS ++ +GF  E    Y++M++  +  D FT+P  +KAC +++++   + +H  + 
Sbjct: 107 FNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI---KKIHGLLF 163

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               E  +F+ +ALV+ Y KFG ++ A+  F+++  RD                      
Sbjct: 164 KFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRD---------------------- 201

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGAC 320
                        V+ WN +  G  + G F+ VLE   RM   E+ + S  TV G L   
Sbjct: 202 -------------VVLWNAMVNGYAQIGQFEMVLETFRRM-NDESVVPSRFTVTGXLSVF 247

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           + +G L  G+ IHG A++  Y     V N+LI MY +CK +  A  +F+M  EK I +WN
Sbjct: 248 AVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWN 307

Query: 381 SMLSGYTHLDCAEESAFL--FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           S++S   H  C +    L     M  +G++P+ VT+ ++LP C+ +A L HG+E H Y++
Sbjct: 308 SIVS--VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI 365

Query: 439 RRAMFNE-----HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
              +  +      +LL N++++MYA+ G + +A  VF+ MS +D  ++  +I GYG+ G 
Sbjct: 366 VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGY 425

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  AL++F  M + Q+KPD VT V VLSACSH+G V +G+    +M S Y + P +EH+ 
Sbjct: 426 GNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYT 485

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           C++D+ GRAG L++A E+   MP      +W  LL AC++H++  + E AA+++ E  PE
Sbjct: 486 CVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPE 545

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           + G YVL++N+Y A G ++++ +VR  MR   VRK PGC+W++  N    F+  D ++ +
Sbjct: 546 HCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPE 605

Query: 674 AQEIYPLLGGLTELMKDAGYV 694
           A  IY  L  LT  + + GYV
Sbjct: 606 AXSIYAGLNSLTARLXEHGYV 626



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 207/466 (44%), Gaps = 56/466 (12%)

Query: 14  SVSQLEKFIPKKWKQPINNEHIMRINLLE---TLKDFAGRGNLSKAFEAFTRIRITAASH 70
           S  QLE  +P    +   N+    IN+      +  F   G   + FE + ++R    + 
Sbjct: 78  SFVQLEIELPSNTLKAGENDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMR----NE 133

Query: 71  DVVLDSFAHIIFCCGKVKA---LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127
            V+ D F    F C  +KA   + + K++H      GLE +  +   LV  Y  F L  +
Sbjct: 134 GVMPDKFT---FPCA-IKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEH 189

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
           A    E   IR  + WN +++ Y + G +   L  +++M    +    FT    L     
Sbjct: 190 AQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAV 249

Query: 188 MMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
           M D++ GR++H   +   ++  + V N+L+ MYGK   ++ A  +F+ M E+D  SWN++
Sbjct: 250 MGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSI 309

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           +S +   G      +L   M   G++ +++T  T+                         
Sbjct: 310 VSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTV------------------------- 344

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG----EYENV--RNALITMYSRCKD 360
                     L ACSH+ AL  G+EIHG  +    G    + ++V  +NA+I MY++C  
Sbjct: 345 ----------LPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGS 394

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           +R A+++F+  + K + +WN M+ GY       E+  +F  M    ++P+ VT   +L  
Sbjct: 395 MRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSA 454

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           C+    +  G+ F   +  +      +  +  +++M  R+G++ EA
Sbjct: 455 CSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 500


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 195/563 (34%), Positives = 307/563 (54%), Gaps = 42/563 (7%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSC--IDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
           D    PS LK+C         R +H+   +    E   FV ++L+  Y + G    AR +
Sbjct: 19  DPHLLPSALKSCPAQ---PLARALHAAAVVSGLAE-DPFVASSLLHSYIRLGATGAARSV 74

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           FD+M E++ V W+ +I+ Y+++G  + A+ L  +M+  GVE NVITWN +  G  R+G  
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRA 134

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GC---------- 340
              +  L RM ++  + D+      L A   V  + +GK++HG  V+ GC          
Sbjct: 135 LDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTAL 194

Query: 341 ---YGEY----ENVR-------------NALITMYSRCKDLRHAYILFK----MTAEKSI 376
              YG+     E VR             NAL+   SR   +  A +LF+       E ++
Sbjct: 195 IDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNV 254

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W S+++         E+  LFR M   GVEPN VTI  +LP  A VA L HG+  HC+
Sbjct: 255 VSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCF 314

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            LR+   ++ + + ++LV+MYA+ GK   A+++FD M  R+ V++ ++I GY + G+   
Sbjct: 315 SLRKGFLHD-VYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAAN 373

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A++LF  M K + KPD VT   VL ACS +GL  EG++ F  M   +GI P++EH+ACMV
Sbjct: 374 AVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMV 433

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
            L GR+G L++A ++I +MP+ P S +W +LLG+C+++ N  + E AAEKL +  P N+G
Sbjct: 434 TLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAG 493

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YVL++N+YA+   WD + +VR  M+++G++K  GC+W++  N     L  D S+     
Sbjct: 494 NYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTA 553

Query: 677 IYPLLGGLTELMKDAGYVVKEEF 699
           I   L  LT  M   G+    +F
Sbjct: 554 ITEKLNQLTIEMNRLGFAPSRDF 576



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 205/471 (43%), Gaps = 51/471 (10%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFY-------ASFSLYNN------------------- 127
           + LHA A+  GL ++P +   L+  Y       A+ S+++                    
Sbjct: 37  RALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSAR 96

Query: 128 -----ACFLVENSNIRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
                A  L+E        P    WN L+S   R G   +A+    +M S     D    
Sbjct: 97  GDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGV 156

Query: 179 PSVLKACGEMMDVDFGRVVHSCI-------DACHEWSLFVHNALVSMYGKFGQVDVARRL 231
              L A G++ +V  G+ VH  +       DAC      V  AL+ MYGK G+ D   R+
Sbjct: 157 SCALSAVGDVKEVSVGKQVHGYVVKAGCRLDAC------VVTALIDMYGKCGRADEIVRV 210

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           F +    D  S N +++  +      EA  LF E    GVE+NV++W +I   C++ G  
Sbjct: 211 FHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRD 270

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
              ++L   M++     +SV     L A ++V AL  G+  H  ++R  +     V +AL
Sbjct: 271 LEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSAL 330

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           + MY++C   RHA  +F     +++++WN+M+ GY     A  +  LF  M +   +P+ 
Sbjct: 331 VDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDL 390

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           VT   +L  C++    + G+ +   + +    +  +  +  +V +  RSGK+ EA  + +
Sbjct: 391 VTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLIN 450

Query: 472 LMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            M    D   + SL+    + G   +A    E++   Q++P +     +LS
Sbjct: 451 EMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKL--FQLEPGNAGNYVLLS 499



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 38/242 (15%)

Query: 85  GKVKALAQGKQLHACAIALGLEKNPVLVPKLV--------------TFYASFSLYNNAC- 129
           G VK ++ GKQ+H   +  G   +  +V  L+               F+ S  +   +C 
Sbjct: 164 GDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCN 223

Query: 130 ----FLVENSNIRYPL----------------PWNLLISLYVRDGFYAEALCVYKQMQSR 169
                L  N+ +   L                 W  +++  V++G   EA+ +++ MQS 
Sbjct: 224 ALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSI 283

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDV 227
            +  ++ T P VL A   +  +  GR  H C      +   ++V +ALV MY K G+   
Sbjct: 284 GVEPNSVTIPCVLPAFANVAALMHGRSAH-CFSLRKGFLHDVYVGSALVDMYAKCGKARH 342

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR +FD M  R+ VSWN MI  YA  G    A QLF  MQ+   + +++T+  + G C +
Sbjct: 343 ARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQ 402

Query: 288 TG 289
            G
Sbjct: 403 AG 404



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           VL +FA+       V AL  G+  H  ++  G   +  +   LV  YA      +A  + 
Sbjct: 295 VLPAFAN-------VAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIF 347

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +    R  + WN +I  Y   G  A A+ ++  MQ  + + D  T+  VL AC +    +
Sbjct: 348 DAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTE 407

Query: 193 FGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            GR   + +   H  S  + +   +V++ G+ G++D A  L ++M  E D+  W +++ +
Sbjct: 408 EGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGS 467


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  342 bits (878), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 196/609 (32%), Positives = 329/609 (54%), Gaps = 41/609 (6%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           + Q KQ+HA +I   L     ++ K++  + S +  + A  +   +       +N +I  
Sbjct: 19  IQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRA 78

Query: 150 YVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEW 207
           Y        A+ +Y +M++ + I GD +TYP V KAC     V+ G+ VH  I    +E 
Sbjct: 79  YSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYEL 138

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
             F+ ++L++ Y   G++  A+++FD+   +D V WN +I+ YA +G+  ++F +F EM 
Sbjct: 139 DGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMV 198

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSHVGAL 326
           E                             +  +R  E       T++GL  AC     L
Sbjct: 199 E-----------------------------VKEVRPNE------GTMMGLIVACIESKNL 223

Query: 327 KLGKEIHGSAVRG-CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           KLG+ IHG  ++     E   +  ALI +Y +C  L  A  LF    EK+ + WNS++ G
Sbjct: 224 KLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICG 283

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           Y  +    E   L REM  S ++P+  T++ +L  CA++     G   H +  ++ +++ 
Sbjct: 284 YCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWD- 342

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
            + +  +L++MYA+ G +  A+ VFD M+ R+  T+ ++++GY   G+   A++LF EM 
Sbjct: 343 -VFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMR 401

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           ++  +PD +T +AVL AC+HSGLV  G++ F+ M   Y I P++EH+ CMVDL GRAGLL
Sbjct: 402 ESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLL 461

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
            +A+E+I  M   P   +W  LL AC IH N  IGEWAA  +++    + G YV++AN+Y
Sbjct: 462 QEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLY 521

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           A+   ++++  VR  M + G+ K  GC+ ++ G+V   F+V D  + +++EIY +L  L+
Sbjct: 522 ASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELS 581

Query: 686 ELMKDAGYV 694
           + +K AGYV
Sbjct: 582 KKLKMAGYV 590



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 210/444 (47%), Gaps = 47/444 (10%)

Query: 56  AFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           A   + ++R   A  +++ D + +  +   C    A+ +GK++H   + +G E +  L  
Sbjct: 88  AISIYNKMR---ACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQS 144

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIR 172
            L+ FY       NA  + +  + +  + WN LI+ Y R G   ++  V+K+M + + +R
Sbjct: 145 SLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVR 204

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARR 230
            +  T   ++ AC E  ++  GR +H  +  D      + +  AL+++Y K G +D AR+
Sbjct: 205 PNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARK 264

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LFD++ E++ V WN++I  Y   G   E  +L  EM                        
Sbjct: 265 LFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMH----------------------- 301

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA-VRGCYGEYENVRN 349
                  LS ++     +  V     L AC+ +GA  LG  +H  A  +G +  +  +  
Sbjct: 302 -------LSNLKPDRFTVSGV-----LSACAQMGAFNLGNWVHRFAEKKGIWDVF--IGT 347

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           ALI MY++C  +  A  +F    E+++ TWN++LSGY     AE +  LF EM  SG  P
Sbjct: 348 ALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARP 407

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + +T  ++L  CA    +++GK++   +L+       +  +  +V++  R+G + EA+ +
Sbjct: 408 DSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEAREL 467

Query: 470 FDLM-SRRDEVTYTSLIAGYGIQG 492
             +M    + V + +L++   I G
Sbjct: 468 IKMMVVEPNVVVWGALLSACSIHG 491


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/609 (31%), Positives = 327/609 (53%), Gaps = 18/609 (2%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWN----L 145
           + Q KQ+ A  I   L   P+ + +L+   ASF  Y    F       + P P       
Sbjct: 15  INQLKQIQALIIIKYLSLTPLFIRRLLN--ASFIQYARQVF------DQIPHPDQGVHCS 66

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
            I+ Y R     EAL  +  M    +R   FT P + K+C  ++ +D G+ VHS  I   
Sbjct: 67  FITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYG 126

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
              S+F  NAL++ Y K   +  A  +FD +L +D +++N +ISAY+  G    A +LF 
Sbjct: 127 FHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFD 186

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           +M++     ++++WN +     + G++     +  RM+ +    + +     L  C+ +G
Sbjct: 187 KMRDR----SIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLG 242

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L++G  I         G    V  A++ MY +C  +    ++F   A + ++TW++M++
Sbjct: 243 DLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIA 302

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY     + E+  LF  M  + ++PN VT+ S+L  CA++ +++ G+    Y+  R + +
Sbjct: 303 GYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLIS 362

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            ++ + ++L+ MY++ G + +A+ +FD + +RD VT+ S+I G  I G    A+ L+  M
Sbjct: 363 -NVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRM 421

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            + ++KP+++T V +++AC+H+G V  G + F  M S + I P +EHFAC+VDL+ R+G 
Sbjct: 422 KEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGR 481

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L  A E I +M   P   +W TLL A +IH N  + E A +KLLE  P+NSG YV+++N+
Sbjct: 482 LIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNI 541

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA+ G W +  KVR  M+D  V+K    +WV+  +    FLV DTS+ ++ E+Y  + GL
Sbjct: 542 YASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEVYSTIDGL 601

Query: 685 TELMKDAGY 693
             L    GY
Sbjct: 602 ALLSTWVGY 610



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 185/422 (43%), Gaps = 81/422 (19%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  + A+  GKQ+H+  I  G   +      L+ FYA  +   +A  + +   ++  + +
Sbjct: 106 CASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAY 165

Query: 144 NLLISLYVR-------------------------------DGFYAEALCVYKQMQSRRIR 172
           N LIS Y R                               +G Y +   ++++MQ     
Sbjct: 166 NCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCE 225

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRL 231
            +  T  +VL  C ++ D++ G  +    D  +  S + V  A++ MY K G VD  R +
Sbjct: 226 PNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 285

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           FD M  RD V+W+ MI+ YA  G   EA +LF  M+   ++ N +T  ++          
Sbjct: 286 FDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSV---------- 335

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV--RGCYGEYENVRN 349
                                    L AC+ +G+++ G+ I GS V  RG       V +
Sbjct: 336 -------------------------LSACAQLGSVETGERI-GSYVESRGLISNVY-VAS 368

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ MYS+C ++  A  +F    ++  +TWNSM+ G      AE++  L+  M    V+P
Sbjct: 369 ALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKP 428

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN-----SLVEMYARSGKVP 464
           N +T   ++  C    +++ G EF      R+M ++H +  N      +V+++ RSG++ 
Sbjct: 429 NNITFVGLMTACTHAGHVELGLEFF-----RSMRSDHNISPNIEHFACIVDLFCRSGRLI 483

Query: 465 EA 466
           +A
Sbjct: 484 DA 485



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 178/386 (46%), Gaps = 50/386 (12%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G+  K +  F R++      + +  + A ++  C K+  L  G ++        L 
Sbjct: 203 YAQNGDYHKGWIIFQRMQDEMCEPNEI--TLATVLSICAKLGDLEMGLRIKKLNDNKNLG 260

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N ++   ++  Y      ++   + ++   R  + W+ +I+ Y ++G   EAL +++ M
Sbjct: 261 SNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENM 320

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQV 225
           +S +I+ ++ T  SVL AC ++  V+ G  + S +++    S ++V +AL+ MY K G +
Sbjct: 321 KSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNI 380

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR++FDK+ +RD V+WN+MI   A  G  ++A  L+  M+E  V+ N IT+  +   C
Sbjct: 381 IKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTAC 440

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
              G+ +  LE    MR+      +++  I   AC                         
Sbjct: 441 THAGHVELGLEFFRSMRSDH----NISPNIEHFAC------------------------- 471

Query: 346 NVRNALITMYSRCKDLRHAY-ILFKMTAEKSIITWNSMLSG---YTHLDCAEESAFLFRE 401
                ++ ++ R   L  AY  + +M  E +++ W ++LS    + +++ AE +     E
Sbjct: 472 -----IVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLE 526

Query: 402 MFRSGVEP----NYVTIASILPLCAR 423
           +     EP    NYV +++I     R
Sbjct: 527 L-----EPDNSGNYVILSNIYASAGR 547


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 201/654 (30%), Positives = 353/654 (53%), Gaps = 42/654 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +A  G L    + F+ +R+   S + V  +F  ++  C     +  G QLH   +  
Sbjct: 211 LNGYAKCGALDSVIKGFSVMRMDQISPNAV--TFDCVLSVCASKLLIDLGVQLHGLVVVS 268

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G++    +   L++ Y+    +++A  L    +    + WN +IS YV+ G   E+L  +
Sbjct: 269 GVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFF 328

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL--FVHNALVSMYGK 221
            +M S  +  D  T+ S+L +  +  ++++ + +H C    H  SL  F+ +AL+  Y K
Sbjct: 329 YEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIH-CYIMRHSISLDIFLTSALIDAYFK 387

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
              V +A+ +F +    D V +  MIS Y   GL+ ++ ++F  + +  +  N IT    
Sbjct: 388 CRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEIT---- 443

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                     L S+  VIG+     + ALKLG+E+HG  ++  +
Sbjct: 444 --------------------------LVSILPVIGI-----LLALKLGRELHGFIIKKGF 472

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               N+  A+I MY++C  +  AY +F+  +++ I++WNSM++     D    +  +FR+
Sbjct: 473 DNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQ 532

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG+  + V+I++ L  CA + +   GK  H ++++ ++ ++ +   ++L++MYA+ G
Sbjct: 533 MGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASD-VYSESTLIDMYAKCG 591

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVL 520
            +  A +VF  M  ++ V++ S+IA  G  G+ + +L LF EM  K+ I+PD +T + ++
Sbjct: 592 NLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEII 651

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           S+C H G V EG + F  MT  YGI PQ EH+AC+VDL+GRAG L +A E +  MP+ P 
Sbjct: 652 SSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPD 711

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           + +W TLLGAC++H+N  + E A+ KL++  P NSGYYVLI+N +A    W+ + KVR+ 
Sbjct: 712 AGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSL 771

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           M++  V+KIPG +W++       F+  D ++ ++  IY LL  L   ++  GY+
Sbjct: 772 MKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYI 825



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 143/522 (27%), Positives = 256/522 (49%), Gaps = 53/522 (10%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---SFSLYNNACFLVE--NSNIR 138
           C     L QGKQ+HA  I   +  +     +++  YA   SFS      + ++   S+IR
Sbjct: 45  CSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIR 104

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD---VDF-G 194
              PWN +IS +VR+G   +AL  Y +M    +  D  T+P ++KAC  + +   +DF  
Sbjct: 105 ---PWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLS 161

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
             V S    C+E   FV ++L+  Y ++G++DV  +LFD++L++D V WN M++ YA  G
Sbjct: 162 DTVSSLGMDCNE---FVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                 + F  M+ + +  N +T++ +                                 
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCV--------------------------------- 245

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L  C+    + LG ++HG  V        +++N+L++MYS+C     A  LF+M +  
Sbjct: 246 --LSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRA 303

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             +TWN M+SGY      EES   F EM  SGV P+ +T +S+LP  ++  NL++ K+ H
Sbjct: 304 DTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIH 363

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
           CYI+R ++ +  + L ++L++ Y +   V  A+++F   +  D V +T++I+GY   G  
Sbjct: 364 CYIMRHSI-SLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLY 422

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             +L++F  + K +I P+ +T+V++L       L ++  ++        G   +      
Sbjct: 423 IDSLEMFRWLVKVKISPNEITLVSILPVIGIL-LALKLGRELHGFIIKKGFDNRCNIGCA 481

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           ++D+Y + G +N A EI  ++      + W +++  C    N
Sbjct: 482 VIDMYAKCGRMNLAYEIFERLSKRDIVS-WNSMITRCAQSDN 522



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/552 (23%), Positives = 249/552 (45%), Gaps = 41/552 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  F   G L++A   + ++     S DV   +F  ++  C  +K       L     +L
Sbjct: 110 ISSFVRNGLLNQALAFYFKMLCFGVSPDV--STFPCLVKACVALKNFKGIDFLSDTVSSL 167

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G++ N  +   L+  Y  +   +    L +    +  + WN++++ Y + G     +  +
Sbjct: 168 GMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGF 227

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
             M+  +I  +  T+  VL  C   + +D G  +H  +     ++   + N+L+SMY K 
Sbjct: 228 SVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKC 287

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+ D A +LF  M   D V+WN MIS Y   GL +E+   F EM   GV  + IT++++ 
Sbjct: 288 GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSL- 346

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                    L SV+    L  C         K+IH   +R    
Sbjct: 347 -------------------------LPSVSKFENLEYC---------KQIHCYIMRHSIS 372

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               + +ALI  Y +C+ +  A  +F       ++ + +M+SGY H     +S  +FR +
Sbjct: 373 LDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWL 432

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            +  + PN +T+ SILP+   +  L+ G+E H +I+++  F+    +  ++++MYA+ G+
Sbjct: 433 VKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKG-FDNRCNIGCAVIDMYAKCGR 491

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  +F+ +S+RD V++ S+I           A+ +F +M  + I  D V++ A LSA
Sbjct: 492 MNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSA 551

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C++      G+     M   + +   +   + ++D+Y + G L  A  +   M      +
Sbjct: 552 CANLPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVS 610

Query: 583 MWATLLGACQIH 594
            W +++ AC  H
Sbjct: 611 -WNSIIAACGNH 621


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 203/632 (32%), Positives = 329/632 (52%), Gaps = 47/632 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C   + +  G ++H  A+  G   +  +   L+  Y  +    NA  L +  
Sbjct: 155 TFPSVLKAC---RNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEM 211

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN +IS Y + G   EAL +   +++     D+ T  S+L AC E  D + G 
Sbjct: 212 PTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM----DSVTVVSLLSACTEAGDFNRGV 267

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS  I    E  LFV N L+ +Y +FG +   +++FD+M  RD +SWN++I AY    
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A  LF EM+                              LSR++     L S+A++
Sbjct: 328 QPLRAILLFQEMR------------------------------LSRIQPDCLTLISLASI 357

Query: 315 IGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           +     S +G ++  + + G  +R G + E   + NA++ MY++   +  A  +F     
Sbjct: 358 L-----SQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPN 412

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGK 431
           K +I+WN+++SGY     A E+  ++  M   G  +  N  T  S+LP C++   L+ G 
Sbjct: 413 KDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGM 472

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  +L+  ++ + + +  SL +MY + G++ +A S+F  + R + V + +LIA +G  
Sbjct: 473 KLHGRLLKNGLYLD-VFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFH 531

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G  A+ LF+EM    +KPDH+T V +LSACSHSGLV EG+  FE M + YGI P L+H
Sbjct: 532 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKH 591

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + CMVDLYGRAG L  A   I  MP  P +++W  LL AC++H N  +G+ A+E L E  
Sbjct: 592 YGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE 651

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           PE+ GY+VL++NMYA+ G W+ + ++R+     G+RK PG + ++  N    F   + ++
Sbjct: 652 PEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTH 711

Query: 672 VQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
              +E+Y  L  L E +K  GYV    F  ++
Sbjct: 712 PMYEEMYRELTALHEKLKMVGYVPDHRFVLQD 743



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 149/542 (27%), Positives = 257/542 (47%), Gaps = 56/542 (10%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L   K LHA  +     +N  +  KLV  Y        A +  ++ + R    WNL+IS 
Sbjct: 67  LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126

Query: 150 YVRDGFYAEAL-CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
           Y R G+ +E + C    M S  ++ D  T+PSVLKAC  + D   G  +H   +     W
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMW 183

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            ++V  +L+ +Y ++G V  AR LFD+M  RD  SWN MIS Y   G  KEA  L     
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL----- 238

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
            +G+                                    +DSV  V  L AC+  G   
Sbjct: 239 SDGLRA----------------------------------MDSVTVVSLLSACTEAGDFN 264

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G  IH  +++        V N LI +Y+    L+    +F     + +I+WNS++  Y 
Sbjct: 265 RGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYE 324

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
             +    +  LF+EM  S ++P+ +T+ S+  + +++  ++  +    + LR+  F E +
Sbjct: 325 LNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDI 384

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK- 506
            + N++V MYA+ G V  A++VF+ +  +D +++ ++I+GY   G    A++++  M + 
Sbjct: 385 TIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEE 444

Query: 507 -NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
             +I  +  T V+VL ACS +G + +G K   R+    G++  +     + D+YG+ G L
Sbjct: 445 GGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVGTSLADMYGKCGRL 503

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA---EKLLE--TRPENSGYYVL 620
           + A  +  ++P    S  W TL+ AC  H   G GE A    +++L+   +P++  +  L
Sbjct: 504 DDALSLFYQIPRV-NSVPWNTLI-AC--HGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 559

Query: 621 IA 622
           ++
Sbjct: 560 LS 561



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           SA   ++ +++G E     I  +  L     NLQ  K  H  ++      +++ +   LV
Sbjct: 37  SANALQDCWKNGNESK--EIDDVHTLFRYCTNLQSAKCLHARLVVSNAI-QNVCISAKLV 93

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE-MNKNQIKPDH 513
            +Y   G V  A+  FD +  RD   +  +I+GYG  G     ++ F   M  + ++PD+
Sbjct: 94  NLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDY 153

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
            T  +VL AC +   V +G K    +   +G    +   A ++ LY R G +  A+ +  
Sbjct: 154 RTFPSVLKACRN---VTDGNK-IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFD 209

Query: 574 KMPYTPTSAMWATLLGACQ 592
           +MP     +  A + G CQ
Sbjct: 210 EMPTRDMGSWNAMISGYCQ 228


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 196/623 (31%), Positives = 315/623 (50%), Gaps = 37/623 (5%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+ ++  C   + L  G+++HA  I  G +K+      LV  Y+       A  +     
Sbjct: 205 FSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP 264

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
               + WN  IS  V  G    AL +  QM+S  +  + FT  S+LKAC      + GR 
Sbjct: 265 ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQ 324

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H   + A  +   ++   LV MY K G +D A+++FD + +RD                
Sbjct: 325 IHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRD---------------- 368

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                              ++ WN +  GC         L L  RMR +   ++      
Sbjct: 369 -------------------LVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAA 409

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L + + + A+   +++H  A +  +    +V N LI  Y +C  L +AY +F+      
Sbjct: 410 VLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYD 469

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           II + SM++  +  D  E++  LF EM R G++P+   ++S+L  CA ++  + GK+ H 
Sbjct: 470 IIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           ++++R  F   +   N+LV  YA+ G + +A   F  +  +  V+++++I G    G G+
Sbjct: 530 HLIKR-QFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGK 588

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL +F  M    I P+H+TM +VL AC+H+GLV E ++ F  M  ++GI    EH+ACM
Sbjct: 589 RALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACM 648

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           +DL GRAG L+ A E++  MP+   +A+W  LL A ++HR+  +G  AAEKL    PE S
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKS 708

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G +VL+AN YA+ G WD +AKVR  M+D  V+K P  +WV+  +    F+V D S+ +A+
Sbjct: 709 GTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRAR 768

Query: 676 EIYPLLGGLTELMKDAGYVVKEE 698
           +IY  L  L +LM  AGYV   E
Sbjct: 769 DIYAKLDELGDLMTKAGYVPNVE 791



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 229/490 (46%), Gaps = 44/490 (8%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
            ++L QG  +HA  +  GL    V    L++FY+   L  +A  + +       + W+ L
Sbjct: 17  TQSLLQGAHIHAHLLKSGL--FAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSL 74

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH- 205
           ++ Y  +    +AL  ++ M+S  +R + F  P VLK C    D  FG  +H+   A   
Sbjct: 75  VTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CAP--DAGFGTQLHALAMATGL 131

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQLFV 264
              +FV NALV+MYG FG VD AR +FD+   ER+ VSWN ++SAY        A ++F 
Sbjct: 132 GGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFG 191

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           EM   GV+ N   ++ +                                   + AC+   
Sbjct: 192 EMVWGGVQPNEFGFSCV-----------------------------------VNACTGSR 216

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L+ G+++H   +R  Y +     NAL+ MYS+  D+R A ++F    E  +++WN+ +S
Sbjct: 217 DLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFIS 276

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           G       + +  L  +M  SG+ PN  T++SIL  CA       G++ H ++++    +
Sbjct: 277 GCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADS 336

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
           ++ + +  LV+MYA+ G + +AK VFD + +RD V + +LI+G     +   AL LF  M
Sbjct: 337 DNYIAFG-LVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRM 395

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            K     +  T+ AVL + + S   +   +Q   +    G          ++D Y +   
Sbjct: 396 RKEGFDVNRTTLAAVLKSTA-SLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDC 454

Query: 565 LNKAKEIITK 574
           LN A  +  K
Sbjct: 455 LNYAYRVFEK 464



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 12/288 (4%)

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           +L  G  IH   ++   G +   RN L++ YS+C+    A  +F    +   ++W+S+++
Sbjct: 19  SLLQGAHIHAHLLKS--GLFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVT 76

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
            Y++     ++   FR M    V  N   +  +L  CA  A    G + H   +   +  
Sbjct: 77  AYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CAPDAGF--GTQLHALAMATGLGG 133

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           + + + N+LV MY   G V EA+ VFD     R+ V++  L++ Y        A+K+F E
Sbjct: 134 D-IFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGE 192

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M    ++P+      V++AC+ S  +  G+K    M    G    +     +VD+Y + G
Sbjct: 193 MVWGGVQPNEFGFSCVVNACTGSRDLEAGRK-VHAMVIRTGYDKDVFTANALVDMYSKLG 251

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
            +  A  +  K+P T   + W   +  C +H   G  + A E LL+ +
Sbjct: 252 DIRMAAVVFGKVPETDVVS-WNAFISGCVLH---GHDQHALELLLQMK 295



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 114/262 (43%), Gaps = 10/262 (3%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           ++A   F R+R      DV   + A ++     ++A++  +Q+HA A  LG   +  +V 
Sbjct: 386 AEALSLFCRMR--KEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVN 443

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            L+  Y      N A  + E       + +  +I+   +     +A+ ++ +M  + +  
Sbjct: 444 GLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDP 503

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           D F   S+L AC  +   + G+ VH+  I       +F  NALV  Y K G ++ A   F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAF 563

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG--- 289
             + E+  VSW+ MI   A  G  K A  +F  M +E +  N IT  ++   C   G   
Sbjct: 564 SGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVD 623

Query: 290 ----NFKGVLELLSRMRTQETY 307
                F  + E+    RT+E Y
Sbjct: 624 EAKRYFNSMKEMFGIERTEEHY 645


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 190/578 (32%), Positives = 311/578 (53%), Gaps = 41/578 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+  +  C +V+ L  GK++H C I      + V++  L+  YA      ++  + E+  
Sbjct: 157 FSKALKACTEVQDLDNGKKIH-CQIVKVPSFDNVVLTGLLDMYAKCGEIKSSYKVFEDIT 215

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           +R  + W  +I+ YV++  Y E L ++ +M+   + G+ +TY +++ AC ++  +  G+ 
Sbjct: 216 LRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKW 275

Query: 197 VHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            H C I +  E S  +  +L+ MY K G +  ARR+F++    D V W  MI  Y   G 
Sbjct: 276 FHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGS 335

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EA  LF +M   G++ N +T  ++  GC                              
Sbjct: 336 VNEALSLFQKMSGVGIKPNCVTIASVLSGC------------------------------ 365

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMTAEK 374
           GL     VG L+LG+ IHG +++   G ++ NV NAL+ MY++C   R A  +F+M +EK
Sbjct: 366 GL-----VGNLELGRSIHGLSIK--VGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEK 418

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            I+ WNS++SG++      E+ FLF  M    V PN VT+AS+   CA + +L  G   H
Sbjct: 419 DIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLH 478

Query: 435 CYILRRAMF-NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
            Y ++     +  + +  +L++ YA+ G    A+ +FD +  ++ +T++++I GYG QG+
Sbjct: 479 AYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGD 538

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
            + +L+LFEEM K Q KP+  T  +VLSACSH+G+V EG+K F  M   Y   P  +H+ 
Sbjct: 539 TKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYT 598

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVD+  RAG L +A +II KMP  P    +   L  C +H    +GE   +K+L+  P+
Sbjct: 599 CMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPD 658

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
           ++ YYVL++N+YA+ G W +  +VR  M+  G+ KI G
Sbjct: 659 DASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKIAG 696



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 211/453 (46%), Gaps = 48/453 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-EN 134
           ++  ++  C K++AL QGK  H C I  G+E +  LV  L+  Y      +NA  +  E+
Sbjct: 256 TYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEH 315

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           S++   + W  +I  Y  +G   EAL ++++M    I+ +  T  SVL  CG + +++ G
Sbjct: 316 SHVDLVM-WTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELG 374

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           R +H        W   V NALV MY K  Q   A+ +F+   E+D V+WN++IS ++  G
Sbjct: 375 RSIHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNG 434

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF  M  E V  N +T                V  L S               
Sbjct: 435 SIHEALFLFHRMNTESVMPNGVT----------------VASLFS--------------- 463

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTA 372
               AC+ +G+L +G  +H  +V+  +    +V    AL+  Y++C D   A ++F    
Sbjct: 464 ----ACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIE 519

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           EK+ ITW++M+ GY      + S  LF EM +   +PN  T  S+L  C+    +  GK+
Sbjct: 520 EKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKK 579

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV-TYTSLIAGYGIQ 491
           +   + +   F      +  +V+M AR+G++ +A  + + M  + +V  + + + G G+ 
Sbjct: 580 YFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMH 639

Query: 492 GE---GRVALKLFEEMNKNQIKPDHVTMVAVLS 521
                G + +K   +++     PD  +   ++S
Sbjct: 640 SRFDLGEIVIKKMLDLH-----PDDASYYVLVS 667



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 150/330 (45%), Gaps = 13/330 (3%)

Query: 264 VEMQEEGVEVNVITWNTIAGGC-LRTGNFKGVLELLSRMRTQETYLDSVAT---VIGLGA 319
           VE +   +E++V+  + ++    +R   F  + EL       E+ L+  A+    + L  
Sbjct: 6   VESECSKLEIDVVVMDYLSAVMRMRCFTFTTIQELNLPEDNDESSLNYAASRPCFLLLSK 65

Query: 320 CSHVGALKLGKEIHGSAV-RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           C+++ +L+   + HG     G  G+  ++   L+++Y      + A ++F    E     
Sbjct: 66  CTNIDSLR---QAHGVLTGNGLMGDI-SIATKLVSLYGSFGYTKDARLVFDQIPEPDFYL 121

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W  +L  Y   + + E    +  + + G   + +  +  L  C  V +L +GK+ HC I+
Sbjct: 122 WKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIV 181

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   F+  +L    L++MYA+ G++  +  VF+ ++ R+ V +TS+IAGY         L
Sbjct: 182 KVPSFDNVVL--TGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGL 239

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LF  M +N +  +  T   ++ AC+    + +G K F       GI         ++D+
Sbjct: 240 VLFNRMRENSVLGNEYTYGTLVMACTKLRALHQG-KWFHGCLIKSGIELSSCLVTSLLDM 298

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           Y + G ++ A+ +  +  +     MW  ++
Sbjct: 299 YVKCGDISNARRVFNEHSHVDL-VMWTAMI 327


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 211/637 (33%), Positives = 325/637 (51%), Gaps = 40/637 (6%)

Query: 79  HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL--VENSN 136
           H++    + ++L    Q+H   I       P L   L+  YA     N A  L  + + +
Sbjct: 147 HLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHH 206

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            +  + W  LI+       + +AL ++ QM+      + FT+ S+L A    M V  G+ 
Sbjct: 207 FKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQ 266

Query: 197 VHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +HS I     + ++FV  ALV MY K   +  A R+FD+M ER+ VSWN+MI  +    L
Sbjct: 267 LHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNL 326

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
           +  A                             G FK VL      R +    + V+   
Sbjct: 327 YDRA----------------------------VGVFKDVL------REKTVIPNEVSVSS 352

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L AC+++G L  G+++HG  V+        V N+L+ MY +C+       LF+   ++ 
Sbjct: 353 VLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRD 412

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++TWN ++ G+   D  EE+   F  M R G+ P+  + +++L   A +A L  G   H 
Sbjct: 413 VVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHD 472

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I++   + +++ +  SL+ MYA+ G + +A  VF+ +   + +++T++I+ Y + G   
Sbjct: 473 QIIKLG-YVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCAN 531

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
             ++LFE M    I+P HVT V VLSACSH+G V EG   F  M  I+ + P  EH+ACM
Sbjct: 532 QVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACM 591

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VDL GRAG L++AK  I  MP  PT ++W  LLGAC+ + N  +G  AAE+L E  P N 
Sbjct: 592 VDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNP 651

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G YVL+ANM   +G  ++  +VR  M   GVRK PGC+W+D  N+   F   D S+  + 
Sbjct: 652 GNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSD 711

Query: 676 EIYPLLGGLTELMKDAGYVVKEEFCSE--EEIVEEIG 710
           EIY +L  L +L+K  GYV + EF +   EE  EE G
Sbjct: 712 EIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQG 748



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 209/476 (43%), Gaps = 46/476 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ I+        +  G+QLH+     G + N  +   LV  YA  +  ++A  + +  
Sbjct: 247 TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQM 306

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQ-MQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             R  + WN +I  +  +  Y  A+ V+K  ++ + +  +  +  SVL AC  M  ++FG
Sbjct: 307 PERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG 366

Query: 195 RVVHSCIDACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R VH  +       L +V N+L+ MY K    D   +LF  + +RD V+WN ++  +   
Sbjct: 367 RQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQN 426

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
             ++EA   F  M+ EG+  +  +++T+                                
Sbjct: 427 DKFEEACNYFWVMRREGILPDEASFSTV-------------------------------- 454

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L + + + AL  G  IH   ++  Y +   +  +LITMY++C  L  AY +F+   +
Sbjct: 455 ---LHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIED 511

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
            ++I+W +M+S Y    CA +   LF  M   G+EP++VT   +L  C+    ++ G   
Sbjct: 512 HNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAH 571

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG----YG 489
              + +    N     +  +V++  R+G + EAK   + M  +   +    + G    YG
Sbjct: 572 FNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYG 631

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
               GR A +   EM      P +  ++A  + C+ SG + E   +  R+  + G+
Sbjct: 632 NLKMGREAAERLFEMEP--YNPGNYVLLA--NMCTRSGRLEEAN-EVRRLMGVNGV 682


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 209/678 (30%), Positives = 349/678 (51%), Gaps = 51/678 (7%)

Query: 30  INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAA-SHDVVLDSFAHIIFCCGKVK 88
           I N  +   NL+  +  +   GN S+    F+   +++  + D    +F  ++  C   +
Sbjct: 112 IQNRDVYAWNLM--ISGYGRAGNSSEVIRCFSLFMLSSGLTPD--YRTFPSVLKAC---R 164

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
            +  G ++H  A+  G   +  +   L+  Y+ +    NA  L +   +R    WN +IS
Sbjct: 165 TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 224

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
            Y + G   EAL +   +++     D+ T  S+L AC E  D + G  +HS  I    E 
Sbjct: 225 GYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLES 280

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            LFV N L+ +Y +FG++   +++FD+M  RD +SWN++I AY        A  LF EM+
Sbjct: 281 ELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMR 340

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                                         LSR++     L S+A+++     S +G ++
Sbjct: 341 ------------------------------LSRIQPDCLTLISLASIL-----SQLGDIR 365

Query: 328 LGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
             + + G  +R G + E   + NA++ MY++   +  A  +F       +I+WN+++SGY
Sbjct: 366 ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGY 425

Query: 387 THLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
                A E+  ++  M   G +  N  T  S+LP C++   L+ G + H  +L+  ++ +
Sbjct: 426 AQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLD 485

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
            + +  SL +MY + G++ +A S+F  + R + V + +LIA +G  G G  A+ LF+EM 
Sbjct: 486 -VFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML 544

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
              +KPDH+T V +LSACSHSGLV EGQ  FE M + YGI P L+H+ CMVD+YGRAG L
Sbjct: 545 DEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQL 604

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
             A + I  M   P +++W  LL AC++H N  +G+ A+E L E  PE+ GY+VL++NMY
Sbjct: 605 ETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMY 664

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           A+ G W+ + ++R+     G+RK PG + ++  N    F   + ++   +E+Y  L  L 
Sbjct: 665 ASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQ 724

Query: 686 ELMKDAGYVVKEEFCSEE 703
             +K  GYV    F  ++
Sbjct: 725 AKLKMIGYVPDHRFVLQD 742



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 175/380 (46%), Gaps = 55/380 (14%)

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           LV++Y   G V +AR  FD +  RD  +WN MIS Y   G   E  + F           
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM------- 144

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
                      L +G       L    RT  + L +  TVI             G +IH 
Sbjct: 145 -----------LSSG-------LTPDYRTFPSVLKACRTVID------------GNKIHC 174

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            A++  +     V  +LI +YSR K + +A ILF     + + +WN+M+SGY     A+E
Sbjct: 175 LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKE 234

Query: 395 SAFL---FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
           +  L    R M       + VT+ S+L  C    +   G   H Y ++  + +E L + N
Sbjct: 235 ALTLSNGLRAM-------DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESE-LFVSN 286

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            L+++YA  G++ + + VFD M  RD +++ S+I  Y +  +   A+ LF+EM  ++I+P
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP 346

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA---CMVDLYGRAGLLNKA 568
           D +T++++ S  S  G  +   +  +  T   G F  LE       +V +Y + GL++ A
Sbjct: 347 DCLTLISLASILSQLG-DIRACRSVQGFTLRKGWF--LEDITIGNAVVVMYAKLGLVDSA 403

Query: 569 KEIITKMPYTPTSAMWATLL 588
           + +   +P T   + W T++
Sbjct: 404 RAVFNWLPNTDVIS-WNTII 422



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 25/252 (9%)

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE-MFRSGVEP 409
           L+ +Y    ++  A   F     + +  WN M+SGY     + E    F   M  SG+ P
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           +Y T  S+L  C  V +   G + HC  L+   F   + +  SL+ +Y+R   V  A+ +
Sbjct: 152 DYRTFPSVLKACRTVID---GNKIHCLALKFG-FMWDVYVAASLIHLYSRYKAVGNARIL 207

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGL 528
           FD M  RD  ++ ++I+GY   G  + AL L      N ++  D VT+V++LSAC+ +G 
Sbjct: 208 FDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAG- 261

Query: 529 VVEGQKQFERMTSI------YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
                  F R  +I      +G+  +L     ++DLY   G L   +++  +M Y     
Sbjct: 262 ------DFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM-YVRDLI 314

Query: 583 MWATLLGACQIH 594
            W +++ A +++
Sbjct: 315 SWNSIIKAYELN 326



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 8/199 (4%)

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           SA   ++ +++G E     I  +  L     NLQ  K  H  ++      +++ +   LV
Sbjct: 37  SANALQDCWKNGNESK--EIDDVHTLFRYCTNLQSAKCLHARLVVSKQI-QNVCISAKLV 93

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE-MNKNQIKPDH 513
            +Y   G V  A+  FD +  RD   +  +I+GYG  G     ++ F   M  + + PD+
Sbjct: 94  NLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDY 153

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
            T  +VL AC     V++G K    +   +G    +   A ++ LY R   +  A+ +  
Sbjct: 154 RTFPSVLKACR---TVIDGNK-IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFD 209

Query: 574 KMPYTPTSAMWATLLGACQ 592
           +MP     +  A + G CQ
Sbjct: 210 EMPVRDMGSWNAMISGYCQ 228


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 208/665 (31%), Positives = 340/665 (51%), Gaps = 59/665 (8%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           +K+ +Q +QLHA  +         L   L++ Y+  +L +++  L    +    L W  +
Sbjct: 21  IKSRSQAQQLHAQVLKFQASSLCNLS-LLLSIYSHINLLHDSLRLFNTLHFPPALAWKSV 79

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH 205
           I  Y   G   ++L  +  M +  +  D+  +PSVLKAC  +MD++ G  +H   I    
Sbjct: 80  IRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGL 139

Query: 206 EWSLFVHNALVSMYGKFG-------QVDVARRLFDKMLER-------------------D 239
           ++ L+  NAL++MY K         Q   A ++ D+M ER                   D
Sbjct: 140 DFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSD 199

Query: 240 AVSWNTMISA-------------YASKGLWKEAFQLFVEMQEEGV--------------- 271
             ++N  +S              Y  +  ++E     +  Q + +               
Sbjct: 200 IEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEM 259

Query: 272 --EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
             E ++++WNTI  G  R G +   L ++  M       DS      L   +    +  G
Sbjct: 260 MPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG 319

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           KEIHG ++R        V ++LI MY++C  +  +Y +F +  E+  I+WNS+++G    
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQN 379

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              +E    FR+M  + ++P   + +SI+P CA +  L  GK+ H YI R   F+E++ +
Sbjct: 380 GLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG-FDENIFI 438

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            +SLV+MYA+ G +  A+ +FD M  RD V++T++I G  + G    A++LFE+M    I
Sbjct: 439 ASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGI 498

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +P++V  +AVL+ACSH+GLV E  K F  MT  +GI P +EH+A + DL GRAG L +A 
Sbjct: 499 EPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAY 558

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           + I  MP  PT ++WATLL AC++H+N  + E  A ++LE  P+N+G Y+L+AN+Y+A  
Sbjct: 559 DFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAAR 618

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W + AK R  +R  G+RK P C+W++  N    F+  D S+   ++I   +  L ELM+
Sbjct: 619 RWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELME 678

Query: 690 DAGYV 694
             GYV
Sbjct: 679 KEGYV 683



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+ I+  C  +  L  GKQLH      G ++N  +   LV  YA       A  + +  
Sbjct: 403 SFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRM 462

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
            +R  + W  +I      G   +A+ +++QM++  I  +   + +VL AC     VD
Sbjct: 463 RLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVD 519


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  342 bits (877), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 204/618 (33%), Positives = 326/618 (52%), Gaps = 41/618 (6%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+ +H  A+  G +   +L   +V  Y  F    +A  + +    +  + WN +IS Y +
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 153 DGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-F 210
           +  Y E++ V++ + +    R D  T   +L A  E+ ++  G  +HS       +S  +
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY 257

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V    +S+Y K G++ +   LF +  + D V++N MI  Y S G  + +  LF E+   G
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
                                       +R+R+        +T++ L   S  G L L  
Sbjct: 318 ----------------------------ARLRS--------STLVSLVPVS--GHLMLIY 339

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
            IHG  ++  +  + +V  AL T+YS+  ++  A  LF  + EKS+ +WN+M+SGYT   
Sbjct: 340 AIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             E++  LFREM +S   PN VTI  IL  CA++  L  GK  H  ++R   F   + + 
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHD-LVRSTDFESSIYVS 458

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            +L+ MYA+ G + EA+ +FDLM++++EVT+ ++I+GYG+ G+G+ AL +F EM  + I 
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGIT 518

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           P  VT + VL ACSH+GLV EG + F  M   YG  P ++H+ACMVD+ GRAG L +A +
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQ 578

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
            I  M   P S++W TLLGAC+IH++T +    +EKL E  P+N GY+VL++N+++A   
Sbjct: 579 FIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRN 638

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           + + A VR   +   + K PG   ++ G     F   D S+ Q +EIY  L  L   M++
Sbjct: 639 YPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMRE 698

Query: 691 AGYVVKEEFCSEEEIVEE 708
           AGY  + E    +   EE
Sbjct: 699 AGYQPETELALHDVEEEE 716



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 129/522 (24%), Positives = 241/522 (46%), Gaps = 64/522 (12%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS--LYNNACFL-VENSNIRYPLP 142
           +  +++   Q HA  I  G   +  L+ KL    +      Y    FL V+  ++     
Sbjct: 29  RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDV---FL 85

Query: 143 WNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--S 199
           +N+L+  +  +     +L V+  + +S  ++ ++ TY   + A     D   GRV+H  +
Sbjct: 86  FNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQA 145

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +D C +  L + + +V MY KF +V+ AR++FD+M E+D + WNTMIS Y    ++ E+
Sbjct: 146 VVDGC-DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVES 204

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            Q+F ++  E               C R                    LD+   +  L A
Sbjct: 205 IQVFRDLINE--------------SCTR--------------------LDTTTLLDILPA 230

Query: 320 CSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
            + +  L+LG +IH  A + GCY  ++ V    I++YS+C  ++    LF+   +  I+ 
Sbjct: 231 VAELQELRLGMQIHSLATKTGCYS-HDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVA 289

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           +N+M+ GYT     E S  LF+E+  SG      T+ S++P+   +  +      H Y L
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIY---AIHGYCL 346

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
            ++ F  H  +  +L  +Y++  ++  A+ +FD    +   ++ ++I+GY   G    A+
Sbjct: 347 -KSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ------KQFERMTSIYGIFPQLEHF 552
            LF EM K++  P+ VT+  +LSAC+  G +  G+      +  +  +SIY         
Sbjct: 406 SLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV-------S 458

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
             ++ +Y + G + +A+ +   M        W T++    +H
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLH 499



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 193/444 (43%), Gaps = 42/444 (9%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+    +++ L  G Q+H+ A   G   +  ++   ++ Y+          L        
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPD 286

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + +N +I  Y  +G    +L ++K++     R  + T  S++   G +M +     +H 
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI---YAIHG 343

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            C+ +       V  AL ++Y K  +++ AR+LFD+  E+   SWN MIS Y   GL ++
Sbjct: 344 YCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTED 403

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  LF EMQ+     N +T   I                                   L 
Sbjct: 404 AISLFREMQKSEFSPNPVTITCI-----------------------------------LS 428

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ +GAL LGK +H       +     V  ALI MY++C  +  A  LF +  +K+ +T
Sbjct: 429 ACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT 488

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M+SGY      +E+  +F EM  SG+ P  VT   +L  C+    ++ G E    ++
Sbjct: 489 WNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMI 548

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVA 497
            R  F   +  +  +V++  R+G +  A    + MS       + +L+    I  +  +A
Sbjct: 549 HRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLA 608

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLS 521
             + E++   ++ PD+V    +LS
Sbjct: 609 RTVSEKL--FELDPDNVGYHVLLS 630


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 197/556 (35%), Positives = 311/556 (55%), Gaps = 25/556 (4%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV--VH 198
           + WN ++S + ++GF  EA  ++ QM  +    +  ++  +L A      V  GR+    
Sbjct: 154 VSWNAMLSGFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAY-----VQNGRIEDAR 204

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
              D+  +W +   N L+  Y +  ++D AR LFD+M  RD +SWN MI+ YA  GL  E
Sbjct: 205 RLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSE 264

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A +LF E+       +V  W  +  G ++ G    +L+  +R+  +    + V+    + 
Sbjct: 265 ARRLFEELPIR----DVFAWTAMVSGFVQNG----MLDEATRIFEEMPEKNEVSWNAMIA 316

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
                  ++  +E+           +    N ++T Y++C ++  A ILF    ++  I+
Sbjct: 317 GYVQSQQIEKARELFDQMPSRNTSSW----NTMVTGYAQCGNIDQAKILFDEMPQRDCIS 372

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W +M+SGY     +EE+  LF +M R G   N   +A  L  CA +A L+ GK+ H  ++
Sbjct: 373 WAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV 432

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           + A F    +  N+L+ MY + G + EA  VF+ ++ +D V++ ++IAGY   G G+ AL
Sbjct: 433 K-AGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEAL 491

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LFE M K  IKPD VT+V VLSACSH+GLV +G + F  M   YGI    +H+ CM+DL
Sbjct: 492 ALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDL 550

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L++A  ++  MP+ P +A W  LLGA +IH +T +GE AAEK+ E  P+NSG Y
Sbjct: 551 LGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMY 610

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+YAA+G W ++ ++R+ MRD GV+K+PG +WV+  N    F V D S+ +A+ IY
Sbjct: 611 VLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIY 670

Query: 679 PLLGGLTELMKDAGYV 694
             L  L   +K  G+V
Sbjct: 671 AYLEELDLELKKDGFV 686



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/508 (24%), Positives = 229/508 (45%), Gaps = 52/508 (10%)

Query: 44  LKDFAGRGNLSKAFEAFTRI-RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           L  +   GNLS A   F ++      S + +L  FA   F     K   Q          
Sbjct: 129 LSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM--------- 179

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
             L KN +    L++ Y       +A  L ++      + WN L+  YVR     +A  +
Sbjct: 180 --LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSL 237

Query: 163 YKQM----------------------QSRR------IRGDNFTYPSVLKACGEMMDVDFG 194
           + +M                      ++RR      IR D F + +++    +   +D  
Sbjct: 238 FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR-DVFAWTAMVSGFVQNGMLDEA 296

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
             +   +   +E S    NA+++ Y +  Q++ AR LFD+M  R+  SWNTM++ YA  G
Sbjct: 297 TRIFEEMPEKNEVSW---NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG 353

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              +A  LF EM +     + I+W  +  G  ++G  +  L L  +M+     L+  A  
Sbjct: 354 NIDQAKILFDEMPQR----DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALA 409

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L +C+ + AL+LGK++HG  V+  +       NAL+ MY +C  +  A+ +F+   EK
Sbjct: 410 CALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK 469

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            I++WN+M++GY      +E+  LF  M +  ++P+ VT+  +L  C+    +  G E+ 
Sbjct: 470 DIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYF 528

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE 493
             + +      +   +  ++++  R+G++ EA ++   M    D  T+ +L+    I G+
Sbjct: 529 NSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGD 588

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             +  K  E++   +++PD+  M  +LS
Sbjct: 589 TELGEKAAEKV--FEMEPDNSGMYVLLS 614



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 200/482 (41%), Gaps = 86/482 (17%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + WN  IS Y+R G    AL V+  M+ R                               
Sbjct: 61  VKWNRKISAYMRKGQCESALSVFNGMRRR------------------------------- 89

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
                  S   +NA++S Y    + D AR++F+KM +RD +SWN M+S Y   G    A 
Sbjct: 90  -------STVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAAR 142

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            LF +M E+    +V++WN +  G  + G  +   ++  +M  +    + ++    L A 
Sbjct: 143 ALFNQMPEK----DVVSWNAMLSGFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAY 194

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYILFKMTAEKSIITW 379
              G ++  + +  S +     ++E V  N L+  Y R K L  A  LF     +  I+W
Sbjct: 195 VQNGRIEDARRLFDSKM-----DWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISW 249

Query: 380 NSMLSGYTHLDCAEESAFLFREM---------------------------FRSGVEPNYV 412
           N M++GY       E+  LF E+                           F    E N V
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV 309

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           +  +++    +   ++  +E     L   M + +   WN++V  YA+ G + +AK +FD 
Sbjct: 310 SWNAMIAGYVQSQQIEKARE-----LFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDE 364

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M +RD +++ ++I+GY   G+   AL LF +M ++    +   +   LS+C+    +  G
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELG 424

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           ++   R+    G          ++ +YG+ G + +A ++   +      + W T++    
Sbjct: 425 KQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS-WNTMIAGYA 482

Query: 593 IH 594
            H
Sbjct: 483 RH 484



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 155/354 (43%), Gaps = 62/354 (17%)

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           +++ D V WN  ISAY  KG  + A  +F  M+      + +T+N +  G L    F   
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMISGYLSNNKFDCA 110

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
            ++  +M  ++                                           N +++ 
Sbjct: 111 RKVFEKMPDRDLI---------------------------------------SWNVMLSG 131

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +  +L  A  LF    EK +++WN+MLSG+      EE+  +F +M    +  N ++ 
Sbjct: 132 YVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISW 187

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
             +L      A +Q+G+      L  +  +  ++ WN L+  Y R  ++ +A+S+FD M 
Sbjct: 188 NGLLS-----AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP 242

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            RD++++  +I GY   G    A +LFEE+    I+ D     A++S    +G++ E  +
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRLFEEL---PIR-DVFAWTAMVSGFVQNGMLDEATR 298

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            FE M     +      +  M+  Y ++  + KA+E+  +MP   TS+ W T++
Sbjct: 299 IFEEMPEKNEV-----SWNAMIAGYVQSQQIEKARELFDQMPSRNTSS-WNTMV 346



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 32/266 (12%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C ++ AL  GKQLH   +  G +   +    L+  Y        A  + E+   +  + W
Sbjct: 415 CAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSW 474

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-- 201
           N +I+ Y R GF  EAL +++ M+   I+ D+ T   VL AC     VD G    + +  
Sbjct: 475 NTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQ 533

Query: 202 ------DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKG 254
                 +A H      +  ++ + G+ G++D A  L   M    DA +W  ++ A    G
Sbjct: 534 NYGITANAKH------YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHG 587

Query: 255 ---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY---- 307
              L ++A +   EM+ +   + V+  N  A     +G ++ V E+ S+MR +       
Sbjct: 588 DTELGEKAAEKVFEMEPDNSGMYVLLSNLYAA----SGRWREVREMRSKMRDKGVKKVPG 643

Query: 308 -----LDSVATVIGLGACSHVGALKL 328
                + +   +  +G CSH  A ++
Sbjct: 644 YSWVEIQNKTHIFTVGDCSHPEAERI 669



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           + +  ++ WN  +  Y R G+   A SVF+ M RR  VTY ++I+GY    +   A K+F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           E+M       D ++   +LS    +G +   +  F +M         +  +  M+  + +
Sbjct: 115 EKMPDR----DLISWNVMLSGYVKNGNLSAARALFNQMPE-----KDVVSWNAMLSGFAQ 165

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G + +A++I  +M        W  LL A
Sbjct: 166 NGFVEEARKIFDQM-LVKNEISWNGLLSA 193


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 224/692 (32%), Positives = 339/692 (48%), Gaps = 79/692 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  I+       AL   K++H+ A+  GL  +  +   LV  YA     ++A  + +  
Sbjct: 133 TYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGM 192

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG--EMMDVDF 193
             R    W ++I    + G   EA  ++ QM+      +  TY S+L A        +++
Sbjct: 193 VERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEW 252

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN-------- 244
            + VH     A     L V NAL+ MY K G +D AR +FD M +RD +SWN        
Sbjct: 253 VKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQ 312

Query: 245 ---------------------------TMISAYASKGLWKEAFQLFVEMQEEGVEV---- 273
                                      ++++ + S G W    +   E+ +  VEV    
Sbjct: 313 NGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAW----EWVKEVHKHAVEVGLVS 368

Query: 274 -------------------------------NVITWNTIAGGCLRTGNFKGVLELLSRMR 302
                                          NV TWN + GG  +    +  L L  +MR
Sbjct: 369 DLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMR 428

Query: 303 TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLR 362
            +  + D+   V  L A     AL+  KE+H  A+     +   V NAL+ MY++C +  
Sbjct: 429 REGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLR-VGNALVHMYAKCGNTM 487

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
           +A  +F    E+++ TW  M+SG     C  E+  LF +M R G+ P+  T  SIL  CA
Sbjct: 488 YAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACA 547

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
               L+  KE H + +   + ++ L + N+LV MYA+ G V +A+ VFD M  RD  ++T
Sbjct: 548 STGALEWVKEVHSHAVNAGLVSD-LRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWT 606

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
            +I G    G G  AL LF +M     KP+  + VAVLSACSH+GLV EG++QF  +T  
Sbjct: 607 VMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQD 666

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602
           YGI P +EH+ CMVDL GRAG L +AK  I  MP  P  A W  LLGAC  + N  + E+
Sbjct: 667 YGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEF 726

Query: 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFS 662
           AA++ L+ +P+++  YVL++N+YAATG W++   VR+ M+  G+RK PG +W++  N   
Sbjct: 727 AAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIH 786

Query: 663 PFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            F+V DTS+ +++EIY  L  L + +K  GYV
Sbjct: 787 SFVVGDTSHPESKEIYAKLKDLIKRLKAEGYV 818



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 162/608 (26%), Positives = 273/608 (44%), Gaps = 53/608 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G    A + ++++R      + +  ++  I+  C    +L  GK++HA  I  G +
Sbjct: 5   YAEYGYAEDAMKVYSQMRREGGQPNEI--TYLSILKACCSPVSLKWGKKIHAHIIQSGFQ 62

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LV  Y      ++A  + +    R  + W ++I      G   EA   + QM
Sbjct: 63  SDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQM 122

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q      +++TY S+L A      +++ + VHS  ++A     L V NALV MY K G +
Sbjct: 123 QREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSI 182

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D AR +FD M+ERD  SW  MI   A  G  +EAF LF++M+               GGC
Sbjct: 183 DDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMER--------------GGC 228

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
           L                   TYL    +++   A +  GAL+  KE+H  A +  +    
Sbjct: 229 L---------------PNLTTYL----SILNASAITSTGALEWVKEVHKHAGKAGFISDL 269

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NALI MY++C  +  A ++F    ++ +I+WN+M+ G     C  E+  +F +M + 
Sbjct: 270 RVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQE 329

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G  P+  T  S+L         +  KE H + +   + ++ L + ++ V MY R G + +
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSD-LRVGSAFVHMYIRCGSIDD 388

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ +FD ++ R+  T+ ++I G   Q  GR AL LF +M +    PD  T V +LSA   
Sbjct: 389 AQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSAN-- 446

Query: 526 SGLVVEGQKQFERMTSIYGI---FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
              V E   ++ +    Y I      L     +V +Y + G    AK++   M     + 
Sbjct: 447 ---VGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTT 503

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPE----NSGYYVLIANMYAATGCWDKLAKVR 638
            W  ++     H   G G  A    L+   E    ++  YV I +  A+TG  + + +V 
Sbjct: 504 -WTVMISGLAQH---GCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVH 559

Query: 639 TCMRDLGV 646
           +   + G+
Sbjct: 560 SHAVNAGL 567



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 205/448 (45%), Gaps = 41/448 (9%)

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           +I  Y   G+  +A+ VY QM+    + +  TY S+LKAC   + + +G+ +H+  I + 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            +  + V  ALV+MY K G +D A+ +FDKM+ER                          
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVER-------------------------- 94

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
                    NVI+W  + GG    G  +       +M+ +    +S   V  L A +  G
Sbjct: 95  ---------NVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAG 145

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           AL+  KE+H  AV         V NAL+ MY++   +  A ++F    E+ I +W  M+ 
Sbjct: 146 ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIG 205

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN--LQHGKEFHCYILRRAM 442
           G       +E+  LF +M R G  PN  T  SIL   A  +   L+  KE H +   +A 
Sbjct: 206 GLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHA-GKAG 264

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F   L + N+L+ MYA+ G + +A+ VFD M  RD +++ ++I G    G G  A  +F 
Sbjct: 265 FISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFL 324

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M +    PD  T +++L+    +G   E  K+  +     G+   L   +  V +Y R 
Sbjct: 325 KMQQEGFVPDSTTYLSLLNTHVSTG-AWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRC 383

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGA 590
           G ++ A+ I  K+     +  W  ++G 
Sbjct: 384 GSIDDAQLIFDKLAVRNVTT-WNAMIGG 410



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 184/406 (45%), Gaps = 45/406 (11%)

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           MI  YA  G  ++A +++ +M+ EG + N IT+ +I   C                    
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKAC-------------------- 40

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
                         CS V +LK GK+IH   ++  +     V  AL+ MY +C  +  A 
Sbjct: 41  --------------CSPV-SLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQ 85

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
           ++F    E+++I+W  M+ G  H    +E+   F +M R G  PN  T  SIL   A   
Sbjct: 86  LIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAG 145

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            L+  KE H + +   +  + L + N+LV MYA+SG + +A+ VFD M  RD  ++T +I
Sbjct: 146 ALEWVKEVHSHAVNAGLALD-LRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMI 204

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS-HSGLVVEGQKQFERMTSIYG 544
            G    G G+ A  LF +M +    P+  T +++L+A +  S   +E  K+  +     G
Sbjct: 205 GGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAG 264

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
               L     ++ +Y + G ++ A+ +   M      + W  ++G        G G  A 
Sbjct: 265 FISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVIS-WNAMIGGLA---QNGCGHEAF 320

Query: 605 EKLLETRPE----NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
              L+ + E    +S  Y+ + N + +TG W+ + +V     ++G+
Sbjct: 321 TIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGL 366


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 189/575 (32%), Positives = 312/575 (54%), Gaps = 36/575 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           CG +  L  G+ LH  A+ +G+  +P+++  L + Y+      +AC L      +  + W
Sbjct: 229 CGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSW 288

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-D 202
             LI +Y   G   EA+ ++++M    ++ D+     +L   G   +V  G+  H+ I  
Sbjct: 289 TSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMK 348

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                ++ V NAL+SMYGKF  VD A R+F  + +RDA SWN MI  Y   G   +  +L
Sbjct: 349 RNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLEL 408

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           + EMQ                       F+   E L          D+ + V  + +CS 
Sbjct: 409 YREMQ-----------------------FRDTYEFLC---------DANSLVSAISSCSR 436

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK-SIITWNS 381
           +  L+LG+  H  +++    E  +V N LI MY RC    HA  +F +   K  ++TWN+
Sbjct: 437 LVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNT 496

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++S Y HL  +  +  L+ +M   G+ PN  T+ +++  CA +  L+ G++ H Y+ +  
Sbjct: 497 LISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYV-KEM 555

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            ++  + +  +L++MYA+ G++  A+ +FD M + D V +  +I+GYG+ GE + AL+LF
Sbjct: 556 GWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELF 615

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
            +M    IKP+ VT +A+LSAC HSGL+ EG++ F RM   Y + P L+H+ACMVDL G+
Sbjct: 616 GKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGK-YSLEPNLKHYACMVDLLGK 674

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           +G L +A++++  MP  P   +W TLL AC++H +  +G   A+K   +  EN GYY+LI
Sbjct: 675 SGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAFASDAENEGYYILI 734

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
           +N Y +   WD++ K+R  M++ GV+K  G + VD
Sbjct: 735 SNSYGSAKKWDEIEKLREAMKNHGVQKGAGWSAVD 769



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 146/564 (25%), Positives = 253/564 (44%), Gaps = 50/564 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA A+  GL + P +V KLV+ Y+S      A              WN LI  +    
Sbjct: 30  RVHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCAS 89

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNA 214
            +  AL  +++M +   R   FT P    A  E+  +  G  VH+    C  + L   + 
Sbjct: 90  DFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHA---YCVRYGLLAVDG 146

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
                   G V V                ++++  YA  G+ ++A +LF EM+E     +
Sbjct: 147 --------GSVAVP---------------SSLVYMYARCGVVRDAVKLFEEMRER----D 179

Query: 275 VITWNTIAGGCLRTG----NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           V+ W  +  GC+R G      + ++E++      +   +S     GL AC  +  L  G+
Sbjct: 180 VVAWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGR 239

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
            +HG AV+   G+   V +AL +MYS+C     A  LF    EK +++W S++  Y    
Sbjct: 240 CLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRG 299

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
              E+  LF+EM  SG++P+ V ++ +L       N+  GK FH  I++R  F +++L+ 
Sbjct: 300 LIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRN-FGDNVLVG 358

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM---NKN 507
           N+L+ MY +   V  A  VF L+ +RD  ++  +I GY   G     L+L+ EM   +  
Sbjct: 359 NALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTY 418

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA----CMVDLYGRAG 563
           +   D  ++V+ +S+CS   LV   + +  R    Y I   L+  +     ++ +YGR G
Sbjct: 419 EFLCDANSLVSAISSCSR--LV---ELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCG 473

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLG--ACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
             + A +I            W TL+   A   H NT +  +  + L E    NS   + +
Sbjct: 474 KFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLY-DQMLTEGLTPNSTTLITV 532

Query: 622 ANMYAATGCWDKLAKVRTCMRDLG 645
            +  A     ++  K+ + ++++G
Sbjct: 533 ISACANLVALERGEKIHSYVKEMG 556



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 2/229 (0%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +S    I  C ++  L  G+  H  +I   L+++  +   L+  Y     +++AC +   
Sbjct: 425 NSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGL 484

Query: 135 SNIRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           + ++  +  WN LIS Y   G    A+ +Y QM +  +  ++ T  +V+ AC  ++ ++ 
Sbjct: 485 AKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALER 544

Query: 194 GRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +HS + +   ++ + ++ AL+ MY K GQ+  ARR+FD ML+ D V+WN MIS Y  
Sbjct: 545 GEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGM 604

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
            G  K+A +LF +M+   ++ N +T+  I   C  +G  +   +L +RM
Sbjct: 605 HGEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRM 653


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 211/695 (30%), Positives = 343/695 (49%), Gaps = 82/695 (11%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           D +A ++  C        G+ +HA A+  GL  +  L   L+++Y   +    A  L + 
Sbjct: 27  DHYARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETA--GGAGGLRDA 84

Query: 135 SNIRYPLP--------WNLLISLYVRDGFYAEALCVYKQMQSRR-------IRGDN---- 175
             +   +P        WN L+S++ + G  A+A  V+ +M  R        + G N    
Sbjct: 85  RRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144

Query: 176 --------------------FTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF-VHNA 214
                               FT  +VL +C        GR VHS +      S   V N+
Sbjct: 145 FGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANS 204

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           +++MYGK G  + A  +F++M  R   SWN M+S     G    A  LF  M +     +
Sbjct: 205 VLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDR----S 260

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIH 333
           +++WN +  G  + G     L+L SRM  + +      T+   L AC+++G +++GK++H
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 334 GSAVRGCYGEYENVRNALITMYSRCK---------------------------------D 360
              +R        V NALI+ Y++                                   D
Sbjct: 321 AYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGD 380

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           +  A  +F +   + ++ W +M+ GY      +E+  LFR M   G EPN  T+A++L +
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEV 479
           CA +A L +GK+ HC  +R ++  +   + N+++ MYARSG  P A+ +FD +  R++ +
Sbjct: 441 CASLACLDYGKQIHCRAIR-SLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETI 499

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           T+TS+I      G+G  A+ LFEEM +  ++PD +T V VLSACSH+G V EG++ ++++
Sbjct: 500 TWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQI 559

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGI 599
            + + I P++ H+ACMVDL  RAGL ++A+E I +MP  P +  W +LL AC++H+N  +
Sbjct: 560 KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAEL 619

Query: 600 GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659
            E AAEKLL   P NSG Y  IAN+Y+A G W   A++    ++  VRK  G +W    +
Sbjct: 620 AELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRS 679

Query: 660 VFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
               F  DD  + Q   +Y +   + E +K AG+V
Sbjct: 680 KIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFV 714


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 205/651 (31%), Positives = 347/651 (53%), Gaps = 44/651 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASH--DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG 104
           ++ +G   +A   F  ++  +  H  + VL   A +I  C ++  + +G QLH   +  G
Sbjct: 125 YSQQGYSEEALMVFVDLQRKSGEHPNEFVL---ASVIRACTQLGVVEKGAQLHGFVVRSG 181

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
            +++  +   L+ FY+       A  + +  + +  + W  +I+ Y + G  A +L ++ 
Sbjct: 182 FDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFA 241

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           QM+   +  D +   SVL AC  +  ++ G+ +H+  +    E  + V N L+  Y K  
Sbjct: 242 QMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCN 301

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +V   R+LFD+M+ ++ +SW TMIS Y       EA +LF        E+N + W     
Sbjct: 302 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFG-------EMNRLGWKP--- 351

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                    D  A    L +C    AL+ G+++H   ++     
Sbjct: 352 -------------------------DGFACTSVLTSCGSREALEQGRQVHAYTIKANLES 386

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
            E V+N LI MY++   L  A  +F + AE+++I++N+M+ GY+  +   E+  LF EM 
Sbjct: 387 DEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR 446

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
               +PN  T A+++   + +A+L+HG++FH  +++  + +    + N+LV+MYA+ G +
Sbjct: 447 VRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGL-DFCPFVTNALVDMYAKCGSI 505

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            EA+ +F+    RD V + S+I+ +   GE   AL +F EM K  I+P++VT VAVLSAC
Sbjct: 506 EEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSAC 565

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           SH+G V +G   F  M   +GI P  EH+AC+V L GR+G L +AKE I KMP  P + +
Sbjct: 566 SHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIV 624

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W +LL AC+I  N  +G++AAE  + T P++SG Y+L++N++A+ G W  + KVR  M  
Sbjct: 625 WRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDS 684

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             V K PG +W++  N  + F+  DT++ +A +I  +L  L + +K AGYV
Sbjct: 685 SEVVKEPGRSWIEVNNKVNVFIARDTTHREA-DIGSVLDILIQHIKGAGYV 734



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/481 (27%), Positives = 241/481 (50%), Gaps = 41/481 (8%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           K +H   I  GL+ +  L   L+   +     +NA  + +    +  + W+ ++S+Y + 
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 154 GFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFV 211
           G+  EAL V+  +Q +     N F   SV++AC ++  V+ G  +H   + +  +  ++V
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
             +L+  Y K G ++ AR +FD++ E+ AV+W T+I+ Y   G    + +LF +M+E  V
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
                                            + Y+  V++V  L ACS +  L+ GK+
Sbjct: 249 -------------------------------VPDRYV--VSSV--LSACSMLEFLEGGKQ 273

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IH   +R       +V N LI  Y++C  ++    LF     K+II+W +M+SGY     
Sbjct: 274 IHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSF 333

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             E+  LF EM R G +P+     S+L  C     L+ G++ H Y ++  + ++  +  N
Sbjct: 334 DWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVK-N 392

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            L++MYA+S  + +AK VFD+M+ ++ ++Y ++I GY  Q +   AL+LF EM     KP
Sbjct: 393 GLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKP 452

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF-PQLEHFACMVDLYGRAGLLNKAKE 570
           +  T  A+++A S+   +  GQ+   ++  +   F P + +   +VD+Y + G + +A++
Sbjct: 453 NEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARK 510

Query: 571 I 571
           +
Sbjct: 511 M 511



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 138/262 (52%), Gaps = 4/262 (1%)

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           K IHG  +         + N LI + S+   + +A ++F     K++ITW+SM+S Y+  
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 390 DCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
             +EE+  +F ++ R SG  PN   +AS++  C ++  ++ G + H +++R   F++ + 
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSG-FDQDVY 187

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           +  SL++ Y+++G + EA+ VFD +S +  VT+T++IAGY   G   V+L+LF +M +  
Sbjct: 188 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN 247

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + PD   + +VLSACS     +EG KQ        G    +     ++D Y +   +   
Sbjct: 248 VVPDRYVVSSVLSACSMLEF-LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAG 306

Query: 569 KEIITKMPYTPTSAMWATLLGA 590
           +++  +M        W T++  
Sbjct: 307 RKLFDQM-VVKNIISWTTMISG 327


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 186/526 (35%), Positives = 295/526 (56%), Gaps = 11/526 (2%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWNLLISLY 150
           + +HA  I  GL      + KL+ F      ++   + +     I+ P  L WN +   +
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSL 209
                   AL +Y  M S  +  + +T+P +LK+C +      G+ +H   +   ++  L
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           +VH +L+SMY + G+++ AR++FD+   RD VS+  +I  YAS+G  + A +LF E+  +
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK 183

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
               +V++WN +  G   TGN+K  LEL   M       D    V  + AC+  G+++LG
Sbjct: 184 ----DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 239

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +++H       +G    + NALI +YS+C ++  A  LF+  + K +I+WN+++ GYTH+
Sbjct: 240 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 299

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR--AMFNEHL 447
           +  +E+  LF+EM RSG  PN VT+ SILP CA +  +  G+  H YI +R   + N   
Sbjct: 300 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASS 359

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
           LL  SL++MYA+ G +  AK VFD M  R   ++ ++I G+ + G+   A  LF +M KN
Sbjct: 360 LL-TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKN 418

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            I PD +T V +LSACSHSG++  G+  F  M+  Y I P+LEH+ CM+DL G  GL  +
Sbjct: 419 GIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKE 478

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           AKE+I  MP  P   +W +LL AC++H N  +GE  A+ L++  PE
Sbjct: 479 AKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPE 524



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 205/471 (43%), Gaps = 76/471 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE----------------------------- 106
           +F  ++  C K KA  +G+Q+H   + LG +                             
Sbjct: 90  TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 149

Query: 107 --KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
             ++ V    L+  YAS     NA  L +   ++  + WN +IS Y   G Y EAL ++K
Sbjct: 150 SHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 209

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
            M    +R D  T  +V+ AC +   ++ GR VH  ID  H +  +L + NAL+ +Y K 
Sbjct: 210 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD-HGFGSNLKIVNALIDLYSKC 268

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+V+ A  LF+ +  +D +SWNT+I  Y    L+KEA  LF EM   G   N +T  +I 
Sbjct: 269 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI- 327

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L AC+H+GA+ +G+ IH    +   G
Sbjct: 328 ----------------------------------LPACAHLGAIDIGRWIHVYINKRLKG 353

Query: 343 --EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                ++  +LI MY++C D+  A  +F     +S+ +WN+M+ G+     A  +  LF 
Sbjct: 354 VTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFS 413

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M ++G++P+ +T   +L  C+    L  G+     + +       L  +  ++++    
Sbjct: 414 KMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHC 473

Query: 461 GKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           G   EAK +   M    D V + SL+    +       ++L E   +N IK
Sbjct: 474 GLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNN----VELGESYAQNLIK 520



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 14/294 (4%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  GN  +A E F  +  T    D    +   ++  C +  ++  G+Q+H      G  
Sbjct: 195 YAETGNYKEALELFKDMMKTNVRPDE--STMVTVVSACAQSGSIELGRQVHLWIDDHGFG 252

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +V  L+  Y+       AC L E  + +  + WN LI  Y     Y EAL ++++M
Sbjct: 253 SNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 312

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-----ACHEWSLFVHNALVSMYGK 221
                  ++ T  S+L AC  +  +D GR +H  I+       +  SL    +L+ MY K
Sbjct: 313 LRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT--SLIDMYAK 370

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A+++FD ML R   SWN MI  +A  G    AF LF +M++ G++ + IT+  +
Sbjct: 371 CGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGL 430

Query: 282 AGGCLRTGNF---KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
              C  +G     + +   +S+       L+    +I L    H G  K  KE+
Sbjct: 431 LSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDL--LGHCGLFKEAKEM 482


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 200/614 (32%), Positives = 331/614 (53%), Gaps = 38/614 (6%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL-PWNLL 146
           KA     QLH  A+      + V+    +  Y   +  ++    + NS   + L  +N +
Sbjct: 225 KAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAI 284

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH 205
           I  Y R     EAL +++ +Q   +  D  +     +AC  +     G  VH   + +  
Sbjct: 285 IVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLC 344

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           + ++ V NA++ MYGK G +  A  +F++M+ RDAVSWN +I+A+   G  ++   LFV 
Sbjct: 345 QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVW 404

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           M + G+E +  T+ ++                                   L AC+   A
Sbjct: 405 MLQSGMEPDEFTYGSV-----------------------------------LKACAGWQA 429

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           L  G EIH   ++   G    V  ALI MYS+C  +  A  L    AE+++++WN+++SG
Sbjct: 430 LNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG 489

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           ++    +EE+   F +M   GV+P+  T A+IL  CA +  ++ GK+ H  I+++ + ++
Sbjct: 490 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 549

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
              + ++LV+MY++ G + + + +F+    RD VT+ +++ GY   G G  ALK+FE M 
Sbjct: 550 -AYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQ 608

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
              +KP+H T +AVL AC H GLV +G   F  M S YG+ PQLEH++C+VD+ GR+G +
Sbjct: 609 LENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQV 668

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
           +KA E+I  MP+   + +W TLL  C+IH N  + E AA  +L+  PE+S  YVL++N+Y
Sbjct: 669 SKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIY 728

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           A  G W+++ K+R  MR  G++K PGC+W++  +    FLV D ++ +++EIY  L  LT
Sbjct: 729 ANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLT 788

Query: 686 ELMKDAGYVVKEEF 699
           + MK  GY+   +F
Sbjct: 789 DEMKWVGYMPDTDF 802



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 206/455 (45%), Gaps = 40/455 (8%)

Query: 49  GRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           G     K  EA    R+   S  + LD  S +     C  +K   +G Q+H  ++    +
Sbjct: 287 GYARSDKGIEALGMFRLLQKS-GLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQ 345

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   ++  Y        AC + E    R  + WN +I+ + ++G   + L ++  M
Sbjct: 346 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWM 405

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               +  D FTY SVLKAC     ++ G  +H+  I +      FV  AL+ MY K G +
Sbjct: 406 LQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMM 465

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + A +L D++ E+  VSWN +IS ++ +   +EA + F +M E GV+ +  T+ TI    
Sbjct: 466 EKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATI---- 521

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          L  C+++  ++LGK+IH   ++       
Sbjct: 522 -------------------------------LDTCANLVTVELGKQIHAQIIKKELQSDA 550

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            + + L+ MYS+C +++   ++F+    +  +TWN+M+ GY      EE+  +F  M   
Sbjct: 551 YISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLE 610

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            V+PN+ T  ++L  C  +  ++ G  +   +L     +  L  ++ +V++  RSG+V +
Sbjct: 611 NVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSK 670

Query: 466 AKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALK 499
           A  + + M    D V + +L++   I G   VA K
Sbjct: 671 ALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEK 705



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 128/594 (21%), Positives = 249/594 (41%), Gaps = 107/594 (18%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLD-------------SFAHIIFCCGKVKALAQG 93
           +AGRG++  A + F  +  T      + D             +FA ++  C  ++    G
Sbjct: 118 YAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGG 177

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
            Q+H  A+ +G + +      +VT  A   +Y   C  V+N ++R  L            
Sbjct: 178 IQIHGLAVKMGFDCD------VVTGSALLDMYAKCC--VQNDDLRGGLE----------- 218

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN 213
                   ++K+MQ   +          L+  G  +  DFG  V             +  
Sbjct: 219 --------LFKEMQKAGV--------GALQLHGHALKTDFGTDV------------VIGT 250

Query: 214 ALVSMYGKFGQV-DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           A + MY K   + D + +LF+ +   +  S+N +I  YA      EA  +F  +Q+ G+ 
Sbjct: 251 ATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLG 310

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
           ++ +   +++G        KG LE                                G ++
Sbjct: 311 LDEV---SLSGAXRACAVIKGDLE--------------------------------GLQV 335

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           HG +++        V NA++ MY +C  L  A ++F+    +  ++WN++++ +      
Sbjct: 336 HGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNE 395

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           E++  LF  M +SG+EP+  T  S+L  CA    L  G E H  I++  M  +   +  +
Sbjct: 396 EKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDS-FVGIA 454

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L++MY++ G + +A+ + D ++ +  V++ ++I+G+ +Q +   A K F +M +  + PD
Sbjct: 455 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPD 514

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
           + T   +L  C++  + VE  KQ         +       + +VD+Y + G +   + I 
Sbjct: 515 NFTYATILDTCANL-VTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIF 573

Query: 573 TKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE-----KLLETRPENSGYYVLI 621
            K P        A + G  Q     G+GE A +     +L   +P ++ +  ++
Sbjct: 574 EKAPNRDFVTWNAMVCGYAQ----HGLGEEALKIFEYMQLENVKPNHATFLAVL 623



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 119/549 (21%), Positives = 234/549 (42%), Gaps = 98/549 (17%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R+  P     +   +  F    +  +   Q+   +   F++  + + C +   +  G+  
Sbjct: 7   RHLFPIRFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSH--IFQECSDRKALCPGKQA 64

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H+  I    + ++FV N L+ MY K   +  A ++FD M +RD VSWN M+  YA +G  
Sbjct: 65  HARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDI 124

Query: 257 KEAFQLFVEMQ------------------------------------------------- 267
             A +LF  M                                                  
Sbjct: 125 GVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLA 184

Query: 268 -EEGVEVNVITWNTI----AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
            + G + +V+T + +    A  C++  + +G LEL   M+                  + 
Sbjct: 185 VKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQK-----------------AG 227

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH-AYILFKMTAEKSIITWNS 381
           VGAL+L    HG A++  +G    +  A + MY +C +L   +  LF      ++ ++N+
Sbjct: 228 VGALQL----HGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNA 283

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++ GY   D   E+  +FR + +SG+  + V+++     CA +     G + H   + ++
Sbjct: 284 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSM-KS 342

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           +   ++ + N++++MY + G + EA  VF+ M  RD V++ ++IA +   G     L LF
Sbjct: 343 LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF 402

Query: 502 EEMNKNQIKPDHVTMVAVLSACS-----HSGLVVEGQKQFERM--TSIYGIFPQLEHFAC 554
             M ++ ++PD  T  +VL AC+     + G+ +  +    RM   S  GI         
Sbjct: 403 VWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGI--------A 454

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE--TRP 612
           ++D+Y + G++ KA+++  ++    T   W  ++    + + +   +    K+LE    P
Sbjct: 455 LIDMYSKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDP 513

Query: 613 ENSGYYVLI 621
           +N  Y  ++
Sbjct: 514 DNFTYATIL 522


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  341 bits (875), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 191/549 (34%), Positives = 301/549 (54%), Gaps = 17/549 (3%)

Query: 143  WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
            +N +I+   +    A+AL     M +     + +++ S L AC    D   G  VH+ + 
Sbjct: 860  YNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVS 919

Query: 203  -ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
             + H   +++ +AL+ MY K    + ARR+F+ M ER+ VSWN++I+ Y   G   EA  
Sbjct: 920  KSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALV 979

Query: 262  LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM----RTQETYLDSVATVIGL 317
            LFV M + G   + +T  ++   C      +   ++ +R+    R +E  + S A V   
Sbjct: 980  LFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMY 1039

Query: 318  GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
              C    A +   +   S  R    E      +LIT Y+R  ++  A ++F    EK++I
Sbjct: 1040 AKCGRTRAARCVFDRMAS--RSVVSE-----TSLITGYARSANVEDAQMVFSQMVEKNVI 1092

Query: 378  TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
             WN +++ Y      EE+  LF  + R  V P + T  ++L  C  VA+LQ G++ H ++
Sbjct: 1093 AWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHV 1152

Query: 438  LRRAM-FN----EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            L+    F+      + + NSLV+MY ++G + +   VF+ M+ RD V++ ++I G+   G
Sbjct: 1153 LKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNG 1212

Query: 493  EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
              + AL LFE M  ++  PD VTM+ VLSAC HSGLV EG++ F  MT  +GI P  +H+
Sbjct: 1213 RAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHY 1272

Query: 553  ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
             CM+DL GRAG L + +E+I +M   P + +WA+LLG+C++H+N  +GEWAA KL E  P
Sbjct: 1273 TCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDP 1332

Query: 613  ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
             NSG YVL++NMYA  G W  + +VR+ M+  GV K PGC+W++ G   S FL  D  + 
Sbjct: 1333 RNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSVFLARDNGHP 1392

Query: 673  QAQEIYPLL 681
               EI+ +L
Sbjct: 1393 CKNEIHAIL 1401



 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 159/547 (29%), Positives = 285/547 (52%), Gaps = 24/547 (4%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++ CC +   L   +QLH        + N +L   LV  Y +       CFL+ ++
Sbjct: 153 TMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGN-------CFLLADA 205

Query: 136 -----NIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
                +I  P  + WN+++  Y   G    A+ ++ +M S  +R   +T    + AC + 
Sbjct: 206 RRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDN 265

Query: 189 MDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
             ++ GR +H+  +   +E  + V +++V MY K G +D A+ LF+    +D V   +++
Sbjct: 266 NALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIV 325

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           S  AS G   +A ++F  M+E     N+++WN +  G +R+ +  G L L  +MR +   
Sbjct: 326 SGLASCGRIADAKRVFEGMKER----NLVSWNAMLTGYIRSMDLTGALLLFQQMRQETRE 381

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA--Y 365
            D++     L AC+ +  +  G+E+H  A++  +     ++NAL+ MYS+C  LR A   
Sbjct: 382 FDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERL 441

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
           +LF+M +E+   +WNS++SGY     +E + +   +M +S V PN  T +S L  CA + 
Sbjct: 442 LLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIF 500

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            L+ G + H Y++R+  +    +L + L++MY +  +   +  +F+    RD + + S+I
Sbjct: 501 LLKQGMQIHAYMIRKG-YEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMI 559

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
            G    G+G   L LF+EM K  IK D VT +  L +C   G V  G+  F  M     I
Sbjct: 560 FGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMD-ESI 618

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
            P++EH+ CM++L G+ G + + ++ +  MP+ PT+AMW  +   C+ + N  +GE AA+
Sbjct: 619 IPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAK 678

Query: 606 KLLETRP 612
            + ++ P
Sbjct: 679 CINDSNP 685



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 201/422 (47%), Gaps = 40/422 (9%)

Query: 210  FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            F+ N LVS Y + G++  ARR+FD++   +  S+N ++SA+A  G   +A  LF  + + 
Sbjct: 796  FLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDP 855

Query: 270  GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
                +  ++N +     +       L  L+ M   +  L++ +    L AC+     + G
Sbjct: 856  ----DQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTG 911

Query: 330  KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
             ++H    +  + +   + +AL+ MY++C+    A  +F+   E++I++WNS+++ Y   
Sbjct: 912  VQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQN 971

Query: 390  DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
                E+  LF  M ++G  P+ VT+AS++  CA +A  + G++ H  +++   F E ++L
Sbjct: 972  GPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVL 1031

Query: 450  WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG---------------------- 487
             N+LV+MYA+ G+   A+ VFD M+ R  V+ TSLI G                      
Sbjct: 1032 SNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNV 1091

Query: 488  ---------YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
                     Y   GE   AL+LF  + +  + P H T   VL+AC +   +  GQ+    
Sbjct: 1092 IAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVH 1151

Query: 539  MTS---IYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
            +      +   P+ + F    +VD+Y + G ++   ++  +M      +  A ++G  Q 
Sbjct: 1152 VLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQN 1211

Query: 594  HR 595
             R
Sbjct: 1212 GR 1213



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 199/437 (45%), Gaps = 27/437 (6%)

Query: 67   AASH--DVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
            AA H  D VL+  SFA  +  C   K    G Q+HA        K+  +   L+  YA  
Sbjct: 881  AAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKC 940

Query: 123  SLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
                 A  + E    R  + WN LI+ Y ++G   EAL ++  M       D  T  SV+
Sbjct: 941  EWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVM 1000

Query: 183  KACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
             AC  +     GR VH+ +     +   + + NALV MY K G+   AR +FD+M  R  
Sbjct: 1001 SACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSV 1060

Query: 241  VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
            VS  ++I+ YA     ++A  +F +M    VE NVI WN +     + G  +  L L  R
Sbjct: 1061 VSETSLITGYARSANVEDAQMVFSQM----VEKNVIAWNVLIAAYAQNGEEEEALRLFVR 1116

Query: 301  MRTQETYLDSVATVIGLGACSHVGALKLGKEIH----GSAVRGCYGEYEN--VRNALITM 354
            ++ +  +         L AC +V  L+LG++ H        R  +G   +  V N+L+ M
Sbjct: 1117 LKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDM 1176

Query: 355  YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
            Y +   +     +F+  A +  ++WN+M+ G+     A+++  LF  M  S   P+ VT+
Sbjct: 1177 YLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTM 1236

Query: 415  ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSV 469
              +L  C     ++ G+ +      R+M  +H ++     +  ++++  R+G + E + +
Sbjct: 1237 IGVLSACGHSGLVEEGRRYF-----RSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEEL 1291

Query: 470  FDLMSRR-DEVTYTSLI 485
               MS   D V + SL+
Sbjct: 1292 IKEMSMEPDAVLWASLL 1308



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 226/506 (44%), Gaps = 78/506 (15%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           WN +I+   R G  +EAL ++  M S  IR  + T  SVL  C E +D+   R +H  I 
Sbjct: 119 WNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIA 178

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               + ++ +  ALV +YG    +  ARR FD +LE +A+SWN ++  Y   G+   A  
Sbjct: 179 KRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVD 238

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F  M   GV        T++   L                                AC 
Sbjct: 239 MFFRMLSAGVRP---LGYTVSHAVL--------------------------------ACR 263

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA--------- 372
              AL+ G+ IH   +R  Y  + +VR++++ MY++C  +  A  LF +           
Sbjct: 264 DNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTS 323

Query: 373 ----------------------EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
                                 E+++++WN+ML+GY        +  LF++M +   E +
Sbjct: 324 IVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFD 383

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS-- 468
            +T+ S+L  C  + ++  G+E H + ++   F+  +L  N+LV MY++ G +  A+   
Sbjct: 384 AITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILK-NALVRMYSKCGCLRSAERLL 442

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           +F++ S RD  ++ SLI+GY        AL    +M ++++ P+  T  + L+AC++  L
Sbjct: 443 LFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFL 501

Query: 529 VVEGQKQFERMTSI-YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           + +G +    M    Y I   L   + ++D+Y +    + +  I    P +    +W ++
Sbjct: 502 LKQGMQIHAYMIRKGYEIDDILR--SVLIDMYCKCRQFDYSIRIFEARP-SRDVILWNSM 558

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPE 613
           +  C     +G GE+  +   E + +
Sbjct: 559 IFGCAY---SGKGEYGLDLFDEMQKQ 581



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 184/447 (41%), Gaps = 72/447 (16%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+ N  +      G V  AR LFD M  RD  SWN +I+A +  G   EA  LF  M   
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G+                              R ++  + SV     L  C+    L   
Sbjct: 146 GI------------------------------RPKDATMASV-----LSCCAECLDLCGA 170

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +++HG   +  +     +  AL+ +Y  C  L  A   F    E + I+WN ++  Y   
Sbjct: 171 RQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLA 230

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              + +  +F  M  +GV P   T++  +  C     L+ G+  H ++LR   +  H+ +
Sbjct: 231 GMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHG-YEHHVHV 289

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG----IQGEGRV--------- 496
            +S+V+MYA+ G +  A+S+F+L   +D V  TS+++G      I    RV         
Sbjct: 290 RSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNL 349

Query: 497 ------------------ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
                             AL LF++M +   + D +T+ +VLSAC  +G++  G+ +   
Sbjct: 350 VSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSAC--TGILDIGKGEEVH 407

Query: 539 MTSIY-GIFPQLEHFACMVDLYGRAGLLNKAKEIIT-KMPYTPTSAMWATLLGACQIHRN 596
             +I  G F        +V +Y + G L  A+ ++  +M     S  W +L+   + H  
Sbjct: 408 AFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSM 467

Query: 597 TGIGEWAAEKLL-ETRPENSGYYVLIA 622
           +    +A  K+  E  P  S +   +A
Sbjct: 468 SEAALYALTKMQSEVTPNQSTFSSALA 494



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            L+N  +E  A  G V +A+ +FDLM  RD  ++ ++I      G    AL LF  MN  
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            I+P   TM +VLS C+   L + G +Q     +       +     +VD+YG   LL  
Sbjct: 146 GIRPKDATMASVLSCCAEC-LDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE---KLLETRPENSGYYVLIANM 624
           A+     +   P +  W  ++   + +   G+G+ A +   ++L       GY V     
Sbjct: 205 ARRAFDDI-LEPNAISWNVIV---RRYHLAGMGDMAVDMFFRMLSAGVRPLGYTV----S 256

Query: 625 YAATGCWDKLA 635
           +A   C D  A
Sbjct: 257 HAVLACRDNNA 267



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 28/187 (14%)

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
           ++ F     L N+LV  YAR G++P+A+ VFD +   +  +Y +L++ +   G    A  
Sbjct: 788 KSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARA 847

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSG------LVVEGQKQFERMTSIYGIFPQLEHFA 553
           LF  +      PD  +  AV++A +         L +      + + + Y     L   A
Sbjct: 848 LFHAIP----DPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALS--A 901

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL---GACQIHRNTGIGEWAAE--KLL 608
           C  +   R G+  +   +++K P+     + + LL     C         EW  E  ++ 
Sbjct: 902 CAAEKDSRTGV--QVHALVSKSPHAKDVYIGSALLDMYAKC---------EWPEEARRVF 950

Query: 609 ETRPENS 615
           E  PE +
Sbjct: 951 EAMPERN 957


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  341 bits (875), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 210/652 (32%), Positives = 328/652 (50%), Gaps = 41/652 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  F   G+ +KA + ++ + I     D V  +   +I  C +   L  G QLH  AI  
Sbjct: 234 ITGFLNVGDCAKALKLYSSMLIEGIKFDAV--TMLVVIQACAEYGCLRLGMQLHQLAIKF 291

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            L  +  ++  L+  Y+      ++  L           WN +IS Y+  GF+AEA+ ++
Sbjct: 292 NLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALF 351

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVD-FGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
            +M+  RI+ D  T   +L  C ++ D   +GR +H+  + +  E   ++ NAL+SMY K
Sbjct: 352 IKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVK 411

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
             Q+  A+ +F+KM                 +GL                  +VI+WNT+
Sbjct: 412 HNQITAAQYVFEKM-----------------RGL------------------DVISWNTM 436

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                ++       EL   M   E   +S   V  L  C     L  G+ IHG A++   
Sbjct: 437 ISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGL 496

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               ++  +L  MY  C D R A  +F    ++ +++WNS++S Y   D A ++  LF  
Sbjct: 497 EINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNH 556

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE-HLLLWNSLVEMYARS 460
           M  S +EPN VTI +IL  C ++A+L  G+  H Y  RR +  E    L N+ + MYAR 
Sbjct: 557 MI-SELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARC 615

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           GK+  A+ +F  +  R  V++ ++I GYG+ G GR A   F +M  +  KP++V+  +VL
Sbjct: 616 GKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVL 675

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           SACSHSGL V G + F  M   +GI PQL H+ CMVDL GR G  ++A   I  MP  P 
Sbjct: 676 SACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPD 735

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           +++W  LL +CQI  N  + E    KL+E  P N G ++L++N+YAA G W ++ ++R  
Sbjct: 736 ASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKW 795

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAG 692
           +R+ G+ K PG +W+  GN    F   D  + Q++ IY  L  LT L++D G
Sbjct: 796 LRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 847



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 40/458 (8%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  CG++ A+  G ++H+    L L  +  +   LV FY    L   A  +      R 
Sbjct: 66  VLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERD 125

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN LIS YV    Y EA+ ++ +M+   +  ++ T  ++L ACGEM+++  G+ +H 
Sbjct: 126 LVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHG 185

Query: 200 -CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            C+ +   +   +V  ALV  Y +F  V ++ R+F  ML R                   
Sbjct: 186 YCLRNGLFDMDAYVGTALVGFYMRFDAV-LSHRVFSLMLVR------------------- 225

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                           N+++WN I  G L  G+    L+L S M  +    D+V  ++ +
Sbjct: 226 ----------------NIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVI 269

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+  G L+LG ++H  A++        + NAL+ MYS    L  ++ LF         
Sbjct: 270 QACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAA 329

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ-HGKEFHCY 436
            WNSM+S Y       E+  LF +M    ++ +  TIA +L LC  + +    G+  H +
Sbjct: 330 LWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAH 389

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            ++  +      L N+L+ MY +  ++  A+ VF+ M   D +++ ++I+ +        
Sbjct: 390 AMKSGI-ELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAK 448

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           A +LF  M +++IK +  T+V++L+ C     +V G+ 
Sbjct: 449 AFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRS 486



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 196/390 (50%), Gaps = 51/390 (13%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           WN +I  + +       L  Y QM+S  I  D+ T P VLKACG +  +  G  +HS I 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 202 --DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
             D  ++  + V  ALV  Y K G V  A ++F +M ERD VSWN +IS Y     +KEA
Sbjct: 88  GLDLIND--VRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEA 145

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             LFVEM++ G+                T N + V+ LL                    A
Sbjct: 146 VLLFVEMKKAGL----------------TPNSRTVVALLL-------------------A 170

Query: 320 CSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           C  +  L+LG+EIHG  +R G +     V  AL+  Y R  D   ++ +F +   ++I++
Sbjct: 171 CGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVS 229

Query: 379 WNSMLSGYTHL-DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           WN++++G+ ++ DCA ++  L+  M   G++ + VT+  ++  CA    L+ G + H   
Sbjct: 230 WNAIITGFLNVGDCA-KALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLA 288

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA---GYGIQGEG 494
           ++  + N+ L + N+L+ MY+ +G +  + ++F+ +   D   + S+I+   G+G   E 
Sbjct: 289 IKFNLIND-LFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAE- 346

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
             A+ LF +M   +IK D  T+  +LS C+
Sbjct: 347 --AIALFIKMRLERIKEDVRTIAIMLSLCN 374



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 158/315 (50%), Gaps = 7/315 (2%)

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           WN+I     +  N   +L   ++M +     DS    + L AC  + A+  G  IH S +
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIH-SFI 86

Query: 338 RGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           RG      +VR   AL+  Y +C  +  A  +F    E+ +++WN+++SGY    C +E+
Sbjct: 87  RG-LDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEA 145

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             LF EM ++G+ PN  T+ ++L  C  +  L+ G+E H Y LR  +F+    +  +LV 
Sbjct: 146 VLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVG 205

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
            Y R   V   + VF LM  R+ V++ ++I G+   G+   ALKL+  M    IK D VT
Sbjct: 206 FYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVT 264

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           M+ V+ AC+  G +  G  Q  ++   + +   L     ++++Y   G L  +  +   +
Sbjct: 265 MLVVIQACAEYGCLRLGM-QLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAV 323

Query: 576 PYTPTSAMWATLLGA 590
           P T  +A+W +++ +
Sbjct: 324 P-TSDAALWNSMISS 337


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 204/634 (32%), Positives = 337/634 (53%), Gaps = 44/634 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C ++  L  G++LHA  +  G E N +    L+  YA     ++A  +      + 
Sbjct: 271 VLQVCAELAQLNHGRELHAALLKCGTEFN-IQCNALLVMYARCGWVDSALRVFREIGDKD 329

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN ++S YV++  YAEA+  + +M       D+    S+L A G +  +  GR VH+
Sbjct: 330 YISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHA 389

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +    +  L + N L+ MY K   V+ + R+FD+M  +D VSW T+I+ YA    + E
Sbjct: 390 YAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSE 449

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A   F   Q+EG++V+ +   +I                                   L 
Sbjct: 450 AIGKFRTAQKEGIKVDPMMMGSI-----------------------------------LE 474

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           ACS + ++ L K++H  A+R    +   ++N +I +Y  C ++ +A  +F+M  +K I+T
Sbjct: 475 ACSGLKSISLLKQVHSYAIRNGLLDL-ILKNRIIDIYGECGEVCYALNIFEMLDKKDIVT 533

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W SM++ +       E+  LF +M  +G++P+ V +  IL   A +++L  GKE H +++
Sbjct: 534 WTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLI 593

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R     E  ++ +SLV+MY+  G +  A  VFD    +D V +T++I   G+ G G+ A+
Sbjct: 594 RGKFPVEGAVV-SSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAI 652

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            +F+ M +  + PDHV+ +A+L ACSHS LV EG+   + M S Y + P  EH+AC+VDL
Sbjct: 653 YIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDL 712

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GR+G   +A + I  MP  P S +W  LLGAC+IH+N  +   A +KLLE  P+N G Y
Sbjct: 713 LGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNY 772

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N++A  G W+ + ++RT M + G+RK P C+W++ GN    F   D S+  +Q I+
Sbjct: 773 VLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIH 832

Query: 679 PLLGGLTELMKDAG-YVVKEEF----CSEEEIVE 707
             L  +TE ++  G YV    F     SEEE ++
Sbjct: 833 LKLAEITEKLRREGQYVEDTSFVLHDVSEEEKID 866



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 166/544 (30%), Positives = 252/544 (46%), Gaps = 78/544 (14%)

Query: 88  KALAQGKQLHACAIA---LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWN 144
           +A+++G+QLHA A+A   LG +    L  KL+  Y       +A  L +    R    WN
Sbjct: 69  RAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWN 128

Query: 145 LLISLYVRDGFYAEALCVYKQMQ-SRRIRG---DNFTYPSVLKACGEMMDVDFGRVVHS- 199
            LI   +  G   EA+ VY+ M+ S  + G   D  T  SVLKACG   D   G  VH  
Sbjct: 129 ALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGL 188

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKE 258
            + +  + S  V NALV MY K G +D A R+F+ M + RD  SWN+ IS     G++ E
Sbjct: 189 AVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLE 248

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  LF  MQ +G  +N  ++ T+           GVL++                     
Sbjct: 249 ALDLFRRMQSDGFSMN--SYTTV-----------GVLQV--------------------- 274

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
            C+ +  L  G+E+H + ++ C  E+    NAL+ MY+RC  +  A  +F+   +K  I+
Sbjct: 275 -CAELAQLNHGRELHAALLK-CGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYIS 332

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WNSMLS Y       E+   F EM ++G  P++  I S+L     +  L +G+E H Y +
Sbjct: 333 WNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAV 392

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           ++ + +  L + N+L++MY +   V  +  VFD M  +D V++T++IA Y        A+
Sbjct: 393 KQRL-DSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAI 451

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACS-----------HSGLVVEGQKQF---ERMTSIYG 544
             F    K  IK D + M ++L ACS           HS  +  G        R+  IYG
Sbjct: 452 GKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYG 511

Query: 545 ----------IFPQLEH-----FACMVDLYGRAGLLNKAKEIITKM---PYTPTSAMWAT 586
                     IF  L+      +  MV+ +   GLL++A  +  KM      P S     
Sbjct: 512 ECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVG 571

Query: 587 LLGA 590
           +LGA
Sbjct: 572 ILGA 575



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 178/394 (45%), Gaps = 49/394 (12%)

Query: 152 RDGFYAEALCVYKQMQSRRIRG------DNFTYPSVLKACGEMMDVDFGRVVHSCIDAC- 204
           +DG   EAL   +Q+ +R  RG      D++ +  VL        V  GR +H+   A  
Sbjct: 31  KDGDLREAL---RQLAARSARGRAPPPTDHYGW--VLDLVAVRRAVSEGRQLHAHAVATG 85

Query: 205 ---HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               + + F+   L+ MYGK G++  A RLFD M  R   SWN +I A  S G   EA  
Sbjct: 86  ALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVG 145

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           ++  M+             +AG          VL+                      AC 
Sbjct: 146 VYRAMRAS---------EPVAGAAPDGCTLASVLK----------------------ACG 174

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-MTAEKSIITWN 380
             G  + G E+HG AV+        V NAL+ MY++C  L  A  +F+ M   + + +WN
Sbjct: 175 AEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWN 234

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           S +SG        E+  LFR M   G   N  T   +L +CA +A L HG+E H  +L+ 
Sbjct: 235 SAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKC 294

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
               E  +  N+L+ MYAR G V  A  VF  +  +D +++ S+++ Y        A+  
Sbjct: 295 G--TEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDF 352

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           F EM +N   PDH  +V++LSA  H G ++ G++
Sbjct: 353 FGEMVQNGFNPDHACIVSLLSAVGHLGRLINGRE 386



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMF--NEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           +L L A    +  G++ H + +       ++   L   L+ MY + G++P+A  +FD M 
Sbjct: 61  VLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMP 120

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ----IKPDHVTMVAVLSACSHSGLVV 530
            R   ++ +LI      G    A+ ++  M  ++      PD  T+ +VL AC   G   
Sbjct: 121 ARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEG--- 177

Query: 531 EGQ--KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           +G+   +   +    G+         +V +Y + GLL+ A  +   M      A W + +
Sbjct: 178 DGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAI 237

Query: 589 GAC 591
             C
Sbjct: 238 SGC 240


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 210/652 (32%), Positives = 328/652 (50%), Gaps = 41/652 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  F   G+ +KA + ++ + I     D V  +   +I  C +   L  G QLH  AI  
Sbjct: 234 ITGFLNVGDCAKALKLYSSMLIEGIKFDAV--TMLVVIQACAEYGCLRLGMQLHQLAIKF 291

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            L  +  ++  L+  Y+      ++  L           WN +IS Y+  GF+AEA+ ++
Sbjct: 292 NLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALF 351

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVD-FGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
            +M+  RI+ D  T   +L  C ++ D   +GR +H+  + +  E   ++ NAL+SMY K
Sbjct: 352 IKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVK 411

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
             Q+  A+ +F+KM                 +GL                  +VI+WNT+
Sbjct: 412 HNQITAAQYVFEKM-----------------RGL------------------DVISWNTM 436

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                ++       EL   M   E   +S   V  L  C     L  G+ IHG A++   
Sbjct: 437 ISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGL 496

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               ++  +L  MY  C D R A  +F    ++ +++WNS++S Y   D A ++  LF  
Sbjct: 497 EINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNH 556

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE-HLLLWNSLVEMYARS 460
           M  S +EPN VTI +IL  C ++A+L  G+  H Y  RR +  E    L N+ + MYAR 
Sbjct: 557 MI-SELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARC 615

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           GK+  A+ +F  +  R  V++ ++I GYG+ G GR A   F +M  +  KP++V+  +VL
Sbjct: 616 GKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVL 675

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           SACSHSGL V G + F  M   +GI PQL H+ CMVDL GR G  ++A   I  MP  P 
Sbjct: 676 SACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPD 735

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           +++W  LL +CQI  N  + E    KL+E  P N G ++L++N+YAA G W ++ ++R  
Sbjct: 736 ASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKW 795

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAG 692
           +R+ G+ K PG +W+  GN    F   D  + Q++ IY  L  LT L++D G
Sbjct: 796 LRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 847



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 213/458 (46%), Gaps = 40/458 (8%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  CG++ A+  G ++H+C   L L  +  +   LV FY    L   A  +      R 
Sbjct: 66  VLKACGRLNAIGNGVRIHSCIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERD 125

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN LIS YV    Y EA+ ++ +M+   +  ++ T  ++L ACGEM+++  G+ +H 
Sbjct: 126 LVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHG 185

Query: 200 -CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            C+ +   +   +V  ALV  Y +F  V ++ R+F  ML R                   
Sbjct: 186 YCLRNGLFDMDAYVGTALVGFYMRFDAV-LSHRVFSLMLVR------------------- 225

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                           N+++WN I  G L  G+    L+L S M  +    D+V  ++ +
Sbjct: 226 ----------------NIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVI 269

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+  G L+LG ++H  A++        + NAL+ MYS    L  ++ LF         
Sbjct: 270 QACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAA 329

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ-HGKEFHCY 436
            WNSM+S Y       E+  LF +M    ++ +  TIA +L LC  + +    G+  H +
Sbjct: 330 LWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAH 389

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            ++  +      L N+L+ MY +  ++  A+ VF+ M   D +++ ++I+ +        
Sbjct: 390 AMKSGI-ELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAK 448

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           A +LF  M +++IK +  T+V++L+ C     +V G+ 
Sbjct: 449 AFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRS 486



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 197/390 (50%), Gaps = 51/390 (13%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           WN +I  + +       L  Y QM+S  I  D+ T P VLKACG +  +  G  +HSCI 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 202 --DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
             D  ++  + V  ALV  Y K G V  A ++F +M ERD VSWN +IS Y     +KEA
Sbjct: 88  GLDLIND--VRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEA 145

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             LFVEM++ G+                T N + V+ LL                    A
Sbjct: 146 VLLFVEMKKAGL----------------TPNSRTVVALLL-------------------A 170

Query: 320 CSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           C  +  L+LG+EIHG  +R G +     V  AL+  Y R  D   ++ +F +   ++I++
Sbjct: 171 CGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVS 229

Query: 379 WNSMLSGYTHL-DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           WN++++G+ ++ DCA ++  L+  M   G++ + VT+  ++  CA    L+ G + H   
Sbjct: 230 WNAIITGFLNVGDCA-KALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLA 288

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA---GYGIQGEG 494
           ++  + N+ L + N+L+ MY+ +G +  + ++F+ +   D   + S+I+   G+G   E 
Sbjct: 289 IKFNLIND-LFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAE- 346

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
             A+ LF +M   +IK D  T+  +LS C+
Sbjct: 347 --AIALFIKMRLERIKEDVRTIAIMLSLCN 374



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 158/315 (50%), Gaps = 7/315 (2%)

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           WN+I     +  N   +L   ++M +     DS    + L AC  + A+  G  IH S +
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIH-SCI 86

Query: 338 RGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           RG      +VR   AL+  Y +C  +  A  +F    E+ +++WN+++SGY    C +E+
Sbjct: 87  RG-LDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEA 145

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             LF EM ++G+ PN  T+ ++L  C  +  L+ G+E H Y LR  +F+    +  +LV 
Sbjct: 146 VLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVG 205

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
            Y R   V   + VF LM  R+ V++ ++I G+   G+   ALKL+  M    IK D VT
Sbjct: 206 FYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVT 264

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           M+ V+ AC+  G +  G  Q  ++   + +   L     ++++Y   G L  +  +   +
Sbjct: 265 MLVVIQACAEYGCLRLGM-QLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAV 323

Query: 576 PYTPTSAMWATLLGA 590
           P T  +A+W +++ +
Sbjct: 324 P-TSDAALWNSMISS 337


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 207/645 (32%), Positives = 333/645 (51%), Gaps = 79/645 (12%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL----YNNACF-LVENS 135
           I C    K++ Q KQ+ +    +GLE +   + KL+ F A  SL    Y    F  V++ 
Sbjct: 147 IECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDP 206

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           ++     +N+++ +Y + G   + L +++Q++   +  D FTYP VLKA G + DV  G 
Sbjct: 207 SL---FVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGE 263

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            V   I     +   +V+N+L+ MY +   V+ A++LFD+M  RD+VSWN MIS Y    
Sbjct: 264 KVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCR 323

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
            +++A   F EMQ+EG E                                    D    V
Sbjct: 324 RFEDAINTFREMQQEGNEKP----------------------------------DEATVV 349

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR----------------- 357
             L AC+ +  L+LG EIH + VR   G    + NAL+ MY++                 
Sbjct: 350 STLSACTALKNLELGDEIH-NYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMK 408

Query: 358 --------------CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
                         C DLR A  LF  +  + ++ W +M++GY      +++  LFREM 
Sbjct: 409 NVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 468

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
              V+P+  T+ ++L  CA++  L+ GK  H Y L        +++  +L+EMY++ G V
Sbjct: 469 IQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGY-LDENRITMDVVVGTALIEMYSKCGCV 527

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            ++  +F  +  +D  ++TS+I G  + G+   AL+LF EM +   KPD +T + VLSAC
Sbjct: 528 DKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSAC 587

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS-- 581
           SH GLV EG++ F  M  ++ I P++EH+ C++DL GRAGLL++A+E+I ++P       
Sbjct: 588 SHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIV 647

Query: 582 -AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
             ++  LL AC+IH N  +GE  A+KL      +S  + L+AN+YA+   W+   KVR  
Sbjct: 648 VPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRK 707

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           M++LGV+K+PGC+ ++   +   FLV D S+ +  EI  +L  +T
Sbjct: 708 MKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMMEICSMLNRVT 752



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 204/428 (47%), Gaps = 7/428 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K +A RG L K    F ++R      D    ++  ++   G ++ + QG+++    +  
Sbjct: 215 VKMYAKRGILRKVLLLFQQLREDGLWPDGF--TYPFVLKAIGCLRDVRQGEKVRGFIVKT 272

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G++ +  +   L+  Y   S   NA  L +    R  + WN++IS YVR   + +A+  +
Sbjct: 273 GMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 332

Query: 164 KQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222
           ++MQ     + D  T  S L AC  + +++ G  +H+ +     ++  + NAL+ MY K 
Sbjct: 333 REMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKC 392

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +++AR +FD+M  ++ + W +MIS Y + G  +EA  LF    ++    +V+ W  + 
Sbjct: 393 GCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLF----DKSPVRDVVLWTAMI 448

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G ++  +F   + L   M+ Q    D    V  L  C+ +GAL+ GK IHG        
Sbjct: 449 NGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIT 508

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V  ALI MYS+C  +  +  +F    +K   +W S++ G        E+  LF EM
Sbjct: 509 MDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEM 568

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            R G +P+ +T   +L  C+    ++ G+ F   + +       +  +  ++++  R+G 
Sbjct: 569 ERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGL 628

Query: 463 VPEAKSVF 470
           + EA+ + 
Sbjct: 629 LDEAEELI 636


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/654 (29%), Positives = 332/654 (50%), Gaps = 41/654 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G    A + + + R+T    D    + + ++  CG + A+ +G  +H     +G+ 
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCF--TMSSVLLACGSLMAVKEGVAVHGVIEKIGIA 254

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + ++   L++ Y  F     A  +     ++  + WN +I  Y + G +  ++ ++  M
Sbjct: 255 GDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM 314

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               +  D  +  S ++ACG+  D+  G+ VH   I +  E      N L+ MY K G +
Sbjct: 315 IDGFVP-DMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDL 373

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A+ +FD    +D+V                                   TWN++  G 
Sbjct: 374 LAAQEVFDTTKCKDSV-----------------------------------TWNSLINGY 398

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
            ++G +K  LE    M+  E   DSV  V+ L   S +  +  G+ IH   ++  +    
Sbjct: 399 TQSGYYKEGLESFKMMK-MERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAEL 457

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            + N+L+ +Y++C ++     +F   +   II+WN++++   H D       +  EM   
Sbjct: 458 IIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTE 517

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G+ P+  T+  ILP+C+ +A  + GKE H YI +   F  ++ + N+L+EMY++ G +  
Sbjct: 518 GLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSG-FESNVPIGNALIEMYSKCGSLEN 576

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
              VF  M  +D VT+T+LI+ +G+ GEG+ ALK F++M  + + PD V  +A + ACSH
Sbjct: 577 CIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSH 636

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           SG+V EG + F+RM + Y + P++EH+AC+VDL  R+GLL +A+E I  MP  P +++W 
Sbjct: 637 SGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWG 696

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LL AC+   NT I +  ++K+LE   +++GYYVL++N+YA  G WD++  VR  M+  G
Sbjct: 697 ALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKG 756

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           ++K PG +W++       F   D S  Q  ++  LL  L  LM   GYV   +F
Sbjct: 757 LKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQF 810



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 165/599 (27%), Positives = 285/599 (47%), Gaps = 57/599 (9%)

Query: 6   SRLILNGLSVSQL--EKFIPK--KWKQPINNEHIMR-------INLLETL-KDFAGRGNL 53
           S +I +GLS+S +   K I K  + K PI++  + R       + L  ++ +     G  
Sbjct: 43  SLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLF 102

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           ++A   +T +R      D    +F  +I  C ++  L  G  +H  A+ +G E +  +  
Sbjct: 103 TQALGYYTEMREKKLQPDAF--TFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGN 160

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            L+  Y+ F   +NA ++ E  + R  + WN LIS Y  +GF+ +AL +Y + +   +  
Sbjct: 161 ALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVP 220

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLF 232
           D FT  SVL ACG +M V  G  VH  I+       + + N L+SMY KF ++  ARR+F
Sbjct: 221 DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVF 280

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
            KM  +D+V+WNTMI  YA  G  + + +LF++M +                    G   
Sbjct: 281 SKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID--------------------GFVP 320

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR-NAL 351
            +L + S +R                AC   G L++GK +H   + G   E + V  N L
Sbjct: 321 DMLSITSTIR----------------ACGQSGDLQVGKFVHKYLI-GSGFECDTVACNIL 363

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           I MY++C DL  A  +F  T  K  +TWNS+++GYT     +E    F+ M +   +P+ 
Sbjct: 364 IDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFK-MMKMERKPDS 422

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           VT   +L + +++A++  G+  HC +++   F   L++ NSL+++YA+ G++ +   VF 
Sbjct: 423 VTFVLLLSIFSQLADINQGRGIHCDVIKFG-FEAELIIGNSLLDVYAKCGEMDDLLKVFS 481

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            MS  D +++ ++IA      +  V  ++  EM    + PD  T++ +L  CS   +  +
Sbjct: 482 YMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQ 541

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           G K+        G    +     ++++Y + G L    ++   M        W  L+ A
Sbjct: 542 G-KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDV-VTWTALISA 598



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 178/353 (50%), Gaps = 11/353 (3%)

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           NV  WN+I       G F   L   + MR ++   D+      + +C+ +  L+LG  +H
Sbjct: 85  NVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVH 144

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
             A+   +     + NALI MYSR  DL +A  +F+  + +  ++WNS++SGY      E
Sbjct: 145 EHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWE 204

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           ++  ++ +   +G+ P+  T++S+L  C  +  ++ G   H  I +  +  + +++ N L
Sbjct: 205 DALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGD-VIIGNGL 263

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MY +  ++ EA+ VF  M+ +D VT+ ++I GY   G    ++KLF +M    + PD 
Sbjct: 264 LSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PDM 322

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC--MVDLYGRAGLLNKAKEI 571
           +++ + + AC  SG +  G+   + +    G   + +  AC  ++D+Y + G L  A+E+
Sbjct: 323 LSITSTIRACGQSGDLQVGKFVHKYLI---GSGFECDTVACNILIDMYAKCGDLLAAQEV 379

Query: 572 ITKMPYTPTSAMWATLL-GACQI-HRNTGIGEWAAEKLLETRPENSGYYVLIA 622
                    S  W +L+ G  Q  +   G+  +   K +E +P++  + +L++
Sbjct: 380 FDTTK-CKDSVTWNSLINGYTQSGYYKEGLESFKMMK-MERKPDSVTFVLLLS 430


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 326/629 (51%), Gaps = 42/629 (6%)

Query: 72  VVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           ++ D FA+  II  C  + +L  GK +HA  +  G   +  +   L+  YA      ++ 
Sbjct: 217 ILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY 276

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
           ++         + WN +IS    +G + EA  ++ +M++     + +T  SV KA G+++
Sbjct: 277 WVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLV 336

Query: 190 DVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS--WNTM 246
           DV+ G+ V +C      E ++ V  AL+ MY K G +  AR +FD       V+  WN M
Sbjct: 337 DVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAM 396

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           IS Y+  G  +EA +L+V+M + G+  ++ T+ ++                         
Sbjct: 397 ISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSV------------------------- 431

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAY 365
                       A +   +L+ G+ +HG  ++ G      +V NA+   YS+C  L    
Sbjct: 432 ----------FNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVR 481

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F    E+ I++W ++++ Y+     EE+   F  M   G  PN  T +S+L  CA + 
Sbjct: 482 KVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLC 541

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            L++G++ H  +L +A  +    + ++L++MYA+ G + EA  VFD +S  D V++T++I
Sbjct: 542 FLEYGRQVHG-LLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAII 600

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
           +GY   G    AL+LF  M  + IK + VT++ VL ACSH G+V EG   F++M   YG+
Sbjct: 601 SGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGV 660

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
            P++EH+AC++DL GR G L+ A E I KMP  P   +W TLLG C++H N  +GE AA 
Sbjct: 661 VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAAR 720

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
           K+L  RPE S  YVL++N Y  TG ++    +R  M+D GV+K PG +W+        F 
Sbjct: 721 KILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFY 780

Query: 666 VDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             D  + Q +EIY  L  L E +K  GYV
Sbjct: 781 SGDQQHPQKKEIYVKLEELREKIKAMGYV 809



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/541 (24%), Positives = 239/541 (44%), Gaps = 50/541 (9%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP--VLVPKLVTFYA 120
           I I+       +     ++  C +  ++ + K +H   +    E     VL       Y+
Sbjct: 107 IGISETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYS 166

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
             S +  AC + +    R    W ++I      G + +    + +M +  I  D F Y +
Sbjct: 167 KCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSA 226

Query: 181 VLKACGEMMDVDFGRVVHSCID----ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           ++++C  +  ++ G++VH+ I     A H   +FV  +L++MY K G ++ +  +F+ M 
Sbjct: 227 IIQSCIGLDSLELGKMVHAQIVMRGFATH---IFVSTSLLNMYAKLGSIEDSYWVFNMMT 283

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           E + VSWN MIS   S GL  EAF LFV M+      N+ T                   
Sbjct: 284 EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYT------------------- 324

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMY 355
                      L SV+  +G      +  + +GKE+   A   G  G    V  ALI MY
Sbjct: 325 -----------LVSVSKAVG-----KLVDVNMGKEVQNCASELGIEGNVL-VGTALIDMY 367

Query: 356 SRCKDLRHAYILFKMTAEKSIIT--WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           S+C  L  A  +F        +   WN+M+SGY+   C++E+  L+ +M ++G+  +  T
Sbjct: 368 SKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYT 427

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S+    A   +LQ G+  H  +L+  +    + + N++ + Y++ G + + + VFD M
Sbjct: 428 YCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRM 487

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             RD V++T+L+  Y     G  AL  F  M +    P+  T  +VL +C+ S   +E  
Sbjct: 488 EERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCA-SLCFLEYG 546

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           +Q   +    G+  +    + ++D+Y + G + +A ++  K+   P    W  ++     
Sbjct: 547 RQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYAQ 605

Query: 594 H 594
           H
Sbjct: 606 H 606



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 219/472 (46%), Gaps = 44/472 (9%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +AF+ F R++  A + ++   +   +    GK+  +  GK++  CA  LG+E N ++   
Sbjct: 305 EAFDLFVRMKNGACTPNMY--TLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTA 362

Query: 115 LVTFYASFSLYNNACFLVENS--NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
           L+  Y+     ++A  + + +  N     PWN +IS Y + G   EAL +Y QM    I 
Sbjct: 363 LIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGIT 422

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC--HEWSLFVHNALVSMYGKFGQVDVARR 230
            D +TY SV  A      + FGRVVH  +  C      + V+NA+   Y K G ++  R+
Sbjct: 423 SDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRK 482

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +FD+M ERD VSW T+++AY+   L +EA   F  M+EEG   N  T++++         
Sbjct: 483 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSV--------- 533

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                                     L +C+ +  L+ G+++HG   +      + + +A
Sbjct: 534 --------------------------LISCASLCFLEYGRQVHGLLCKAGLDTEKCIESA 567

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI MY++C  +  A  +F   +   I++W +++SGY      E++  LFR M  SG++ N
Sbjct: 568 LIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKAN 627

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            VT+  +L  C+    ++ G  +   +         +  +  ++++  R G++ +A    
Sbjct: 628 AVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFI 687

Query: 471 DLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             M    +E+ + +L+ G  +   G V L          I+P++     +LS
Sbjct: 688 RKMPMEPNEMVWQTLLGGCRVH--GNVELGEIAARKILSIRPEYSATYVLLS 737



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 190/445 (42%), Gaps = 59/445 (13%)

Query: 181 VLKACGEMMDVDFGRVVHSCI-----DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           VL+ C E   +   + VH  +     +      LF H A V  Y K  +   A  +FD+M
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHV--YSKCSEFRAACGVFDEM 181

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
            +R+  SW  MI      GL+ + F+ F EM   G+  +   ++ I   C          
Sbjct: 182 PQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC---------- 231

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                              IGL +      L+LGK +H   V   +  +  V  +L+ MY
Sbjct: 232 -------------------IGLDS------LELGKMVHAQIVMRGFATHIFVSTSLLNMY 266

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++   +  +Y +F M  E + ++WN+M+SG T      E+  LF  M      PN  T+ 
Sbjct: 267 AKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLV 326

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD--LM 473
           S+     ++ ++  GKE         +   ++L+  +L++MY++ G + +A+SVFD   +
Sbjct: 327 SVSKAVGKLVDVNMGKEVQNCASELGI-EGNVLVGTALIDMYSKCGSLHDARSVFDTNFI 385

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           +      + ++I+GY   G  + AL+L+ +M +N I  D  T  +V +A + S  +    
Sbjct: 386 NCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSL---- 441

Query: 534 KQFERMTSIYGIFPQLEHFACMV-----DLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            QF R+     +   L+     V     D Y + G L   +++  +M      + W TL+
Sbjct: 442 -QFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVS-WTTLV 499

Query: 589 GACQIHRNTGIGEWAAEKLLETRPE 613
            A   +  + +GE A       R E
Sbjct: 500 TA---YSQSSLGEEALATFCLMREE 521



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 4/248 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  ++  G   +A E + ++     + D  L ++  +       K+L  G+ +H   +  
Sbjct: 397 ISGYSQSGCSQEALELYVQMCQNGITSD--LYTYCSVFNAIAASKSLQFGRVVHGMVLKC 454

Query: 104 GLEKNPVLVPKLVT-FYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           GL+   V V   +   Y+      +   + +    R  + W  L++ Y +     EAL  
Sbjct: 455 GLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALAT 514

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGK 221
           +  M+      + FT+ SVL +C  +  +++GR VH  +  A  +    + +AL+ MY K
Sbjct: 515 FCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAK 574

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  A ++FDK+   D VSW  +IS YA  GL ++A QLF  M+  G++ N +T   +
Sbjct: 575 CGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCV 634

Query: 282 AGGCLRTG 289
              C   G
Sbjct: 635 LFACSHGG 642


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 199/558 (35%), Positives = 309/558 (55%), Gaps = 28/558 (5%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           WN ++S Y ++G   +A  V+ +M  +    ++ ++ ++L A      V   ++  +C+ 
Sbjct: 155 WNTILSGYAQNGCVDDARRVFDRMPEK----NDVSWNALLSAY-----VQNSKLEEACVL 205

Query: 202 -DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
             +   W+L   N L+  + K  ++  AR+ FD M  RD VSWNT+I+ YA  G   EA 
Sbjct: 206 FGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEAR 265

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
           QLF    +E    +V TW  +  G ++    +   EL  RM  +    + V+    L   
Sbjct: 266 QLF----DESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGY 317

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIIT 378
                +++ KE+    V  C     NV   N +IT Y++C  +  A  LF    ++  ++
Sbjct: 318 VQGERVEMAKELFD--VMPC----RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS 371

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W +M++GY+    + E+  LF  M R G   N  + +S L  CA V  L+ GK+ H  ++
Sbjct: 372 WAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 431

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   +     + N+L+ MY + G + EA  +F  M+ +D V++ ++IAGY   G G  AL
Sbjct: 432 K-GGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEAL 490

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           + FE M +  +KPD  TMVAVLSACSH+GLV +G++ F  MT  YG+ P  +H+ACMVDL
Sbjct: 491 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDL 550

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAGLL +A  ++  MP+ P +A+W TLLGA ++H NT + E AA+K+    PENSG Y
Sbjct: 551 LGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMY 610

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+YA++G W  + K+R  MRD GV+K+PG +W++  N    F V D  + +  EI+
Sbjct: 611 VLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIF 670

Query: 679 PLLGGLTELMKDAGYVVK 696
             L  L   MK AGYV K
Sbjct: 671 AFLEDLDLRMKKAGYVSK 688



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 202/448 (45%), Gaps = 45/448 (10%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           EKN V    L++ Y   S    AC L  +      + WN L+  +V+     EA   +  
Sbjct: 180 EKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDS 239

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           M+ R    D  ++ +++    +  ++D  R +    D      +F   A+VS Y +   V
Sbjct: 240 MKVR----DVVSWNTIITGYAQNGEIDEARQL---FDESPVHDVFTWTAMVSGYIQNRMV 292

Query: 226 DVARRLFDKMLERDAVS-------------------------------WNTMISAYASKG 254
           + AR LFD+M ER+ VS                               WNTMI+ YA  G
Sbjct: 293 EEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCG 352

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF +M +     + ++W  +  G  ++G+    L L   M  +   L+  +  
Sbjct: 353 KISEAKNLFDKMPKR----DPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFS 408

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L  C+ V AL+LGK++HG  V+G Y     V NAL+ MY +C  +  A  LFK  A K
Sbjct: 409 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK 468

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            I++WN+M++GY+     EE+   F  M R G++P+  T+ ++L  C+    +  G+++ 
Sbjct: 469 DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 528

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE 493
             + +      +   +  +V++  R+G + EA ++   M    D   + +L+    + G 
Sbjct: 529 HTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGN 588

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             +A    +++    ++P++  M  +LS
Sbjct: 589 TELAETAADKI--FAMEPENSGMYVLLS 614



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/552 (25%), Positives = 233/552 (42%), Gaps = 107/552 (19%)

Query: 140 PLP---------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           PLP         WN+ IS Y+R G  +EAL V+K+M                        
Sbjct: 50  PLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMP----------------------- 86

Query: 191 VDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
                           WS   +NA++S Y + G+ ++AR LFD+M ERD VSWN MI  Y
Sbjct: 87  ---------------RWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGY 131

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR-------- 302
                  +A +LF  M E     +V +WNTI  G  + G       +  RM         
Sbjct: 132 VRNRNLGKARELFERMPER----DVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWN 187

Query: 303 ------TQETYLDSVATVIGLGA--------CSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                  Q + L+    + G           C   G +K  K +            + V 
Sbjct: 188 ALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVS 247

Query: 349 -NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            N +IT Y++  ++  A  LF  +    + TW +M+SGY      EE+    RE+F    
Sbjct: 248 WNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEA----RELFDRMP 303

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           E N V+  ++L    +   ++  KE     L   M   ++  WN+++  YA+ GK+ EAK
Sbjct: 304 ERNEVSWNAMLAGYVQGERVEMAKE-----LFDVMPCRNVSTWNTMITGYAQCGKISEAK 358

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           ++FD M +RD V++ ++IAGY   G    AL+LF  M +   + +  +  + LS C+   
Sbjct: 359 NLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVV 418

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVD-----LYGRAGLLNKAKEIITKMPYTPTSA 582
            +  G++   R+  + G +       C V      +Y + G + +A ++  +M      +
Sbjct: 419 ALELGKQLHGRL--VKGGYET----GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 472

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLET------RPENSGYYVLIANMYAATGCWDKLAK 636
            W T++     H   G GE  A +  E+      +P+++   V + +  + TG  DK  +
Sbjct: 473 -WNTMIAGYSRH---GFGE-EALRFFESMKREGLKPDDA-TMVAVLSACSHTGLVDKGRQ 526

Query: 637 -VRTCMRDLGVR 647
              T  +D GVR
Sbjct: 527 YFHTMTQDYGVR 538



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 94/234 (40%), Gaps = 37/234 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+  +  C  V AL  GKQLH   +  G E    +   L+  Y        A  L +  
Sbjct: 406 SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 465

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I+ Y R GF  EAL  ++ M+   ++ D+ T  +VL AC     VD GR
Sbjct: 466 AGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGR 525

Query: 196 -VVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
              H+            H A +V + G+ G ++ A  L   M  E DA  W T++ A   
Sbjct: 526 QYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRV 585

Query: 250 -------------------------------YASKGLWKEAFQLFVEMQEEGVE 272
                                          YAS G W +  +L V M+++GV+
Sbjct: 586 HGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 639


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 203/622 (32%), Positives = 328/622 (52%), Gaps = 52/622 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           + L  GKQ+HA  +  G E N  ++  LV  Y       ++  L+ +   R  + WN ++
Sbjct: 129 EGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 187

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS--CIDACH 205
           S   ++    EAL   ++M    +  D FT  SVL AC  +  +  G+ +H+    +   
Sbjct: 188 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 247

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           + + FV +ALV MY    QV   RR+FD M +R    WN MI+ Y+     KEA  LF+ 
Sbjct: 248 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 307

Query: 266 MQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           M+E  G+  N  T   +   C+R+G F       SR                        
Sbjct: 308 MEESAGLLANSTTMAGVVPACVRSGAF-------SRKEA--------------------- 339

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
                  IHG  V+        V+N L+ MYSR   +  A  +F    ++ ++TWN+M++
Sbjct: 340 -------IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 392

Query: 385 GYTHLDCAEESAFLFREM-----------FRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           GY   +  E++  L  +M            R  ++PN +T+ +ILP CA ++ L  GKE 
Sbjct: 393 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 452

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H Y ++  +  + + + ++LV+MYA+ G +  ++ VFD + +++ +T+  +I  YG+ G 
Sbjct: 453 HAYAIKNNLATD-VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGN 511

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G+ A+ L   M    +KP+ VT ++V +ACSHSG+V EG + F  M   YG+ P  +H+A
Sbjct: 512 GQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA 571

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           C+VDL GRAG + +A +++  MP     A  W++LLGA +IH N  IGE AA+ L++  P
Sbjct: 572 CVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 631

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
             + +YVL+AN+Y++ G WDK  +VR  M++ GVRK PGC+W++ G+    F+  D+S+ 
Sbjct: 632 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 691

Query: 673 QAQEIYPLLGGLTELMKDAGYV 694
           Q++++   L  L E M+  GYV
Sbjct: 692 QSEKLSGYLETLWERMRKEGYV 713



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/538 (25%), Positives = 243/538 (45%), Gaps = 55/538 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVEN 134
           +F  ++     ++ +  GKQ+HA     G   + V V   LV  Y     +     + + 
Sbjct: 12  AFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 71

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM---MDV 191
            + R  + WN LIS       +  AL  ++ M    +   +FT  SV+ AC  +     +
Sbjct: 72  ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGL 131

Query: 192 DFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
             G+ VH+      E + F+ N LV+MYGK G++  ++ L      RD V+WNT++S+  
Sbjct: 132 MMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 191

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                 EA +   EM  EGVE +  T +++                              
Sbjct: 192 QNEQLLEALEYLREMVLEGVEPDEFTISSV------------------------------ 221

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                L ACSH+  L+ GKE+H  A++ G   E   V +AL+ MY  CK +     +F  
Sbjct: 222 -----LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 276

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQH 429
             ++ I  WN+M++GY+  +  +E+  LF  M  S G+  N  T+A ++P C R      
Sbjct: 277 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 336

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
            +  H ++++R + +    + N+L++MY+R GK+  A  +F  M  RD VT+ ++I GY 
Sbjct: 337 KEAIHGFVVKRGL-DRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 395

Query: 490 IQGEGRVALKLFEEM-----------NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
                  AL L  +M           ++  +KP+ +T++ +L +C+    + +G K+   
Sbjct: 396 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHA 454

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
                 +   +   + +VD+Y + G L  ++++  ++P       W  ++ A  +H N
Sbjct: 455 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 511



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 201/420 (47%), Gaps = 61/420 (14%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-------SLFVHNALVSMYGKFG 223
           I+ DN+ +P++LKA  ++ D++ G+ +H+     H +       S+ V N LV++Y K G
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHA-----HVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
                 ++FD++ ER+ VSWN++IS+  S   W+ A + F  M +E VE +  T  ++  
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
            C             S +   E                    L +GK++H   +R   GE
Sbjct: 121 AC-------------SNLPMPE-------------------GLMMGKQVHAYGLRK--GE 146

Query: 344 YEN-VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
             + + N L+ MY +   L  + +L      + ++TWN++LS     +   E+    REM
Sbjct: 147 LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 206

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              GVEP+  TI+S+LP C+ +  L+ GKE H Y L+    +E+  + ++LV+MY    +
Sbjct: 207 VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQ 266

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLS 521
           V   + VFD M  R    + ++IAGY      + AL LF  M ++  +  +  TM  V+ 
Sbjct: 267 VLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVP 326

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFA--CMVDLYGRAGLLNKAKEIITKM 575
           AC  SG        F R  +I+G   +     + F    ++D+Y R G ++ A  I  KM
Sbjct: 327 ACVRSG-------AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 379



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 124/257 (48%), Gaps = 15/257 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  C +  A ++ + +H   +  GL+++  +   L+  Y+     + A  +    
Sbjct: 320 TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 379

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS--RRI---------RGDNFTYPSVLKA 184
             R  + WN +I+ YV    + +AL +  +MQ+  R++         + ++ T  ++L +
Sbjct: 380 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPS 439

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           C  +  +  G+ +H+  I       + V +ALV MY K G + ++R++FD++ +++ ++W
Sbjct: 440 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 499

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           N +I AY   G  +EA  L   M  +GV+ N +T+ ++   C  +G     L +   M+ 
Sbjct: 500 NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKP 559

Query: 304 Q---ETYLDSVATVIGL 317
               E   D  A V+ L
Sbjct: 560 DYGVEPSSDHYACVVDL 576



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 103/212 (48%), Gaps = 7/212 (3%)

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   G++P+     ++L   A + +++ GK+ H ++ +     + + + N+LV +Y + G
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
                  VFD +S R++V++ SLI+      +  +AL+ F  M    ++P   T+V+V++
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFA--CMVDLYGRAGLLNKAKEIITKMPYT 578
           ACS+  L +       +    YG+   +L  F    +V +YG+ G L  +K ++      
Sbjct: 121 ACSN--LPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 178

Query: 579 PTSAMWATLLGA-CQIHRNTGIGEWAAEKLLE 609
                W T+L + CQ  +     E+  E +LE
Sbjct: 179 DL-VTWNTVLSSLCQNEQLLEALEYLREMVLE 209


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 195/657 (29%), Positives = 344/657 (52%), Gaps = 39/657 (5%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
           ++ +  +  +A      +AFE F R+      H++    F  ++     ++    G+ +H
Sbjct: 12  VSFVTLIHGYAQSNKFIEAFELFARLH--GEGHELNPFVFTTVLKLLVSMEWAELGRIVH 69

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
            C + +G   N  +   L+  Y+     + A  + +  + +  + W  +I+ Y  +  ++
Sbjct: 70  GCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFS 129

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALV 216
           EAL  + QM+    + +NFT+  VLKAC  + + D G+ VH S +   +E  L+V   L+
Sbjct: 130 EALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLL 189

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            +Y + G  D A R F  M + D + W+ MIS +A  G  ++A ++F +M+   V  N  
Sbjct: 190 ELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQF 249

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           T++++                                   L A + + +L L K IHG A
Sbjct: 250 TFSSV-----------------------------------LQASADIESLDLSKTIHGHA 274

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++        V NAL+  Y++C  +  +  LF+  ++++ ++WN+++  Y  L   E + 
Sbjct: 275 LKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERAL 334

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF  M R  V+   VT +SIL  CA +A L+ G + HC +  + ++ + + + N+L++M
Sbjct: 335 SLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHC-LTAKTIYGQDVAVGNALIDM 393

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G + +A+ +FD++  RD+V++ ++I GY + G G  A+K+F  M + + KPD +T 
Sbjct: 394 YAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTF 453

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           V VLSACS++G + EG++ F  M   YGI P +EH+ CMV L GR+G L++A + I  +P
Sbjct: 454 VGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIP 513

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           + P+  +W  LLGAC IH +  +G  +A+++LE  P +   +VL++N+YA    W  +A 
Sbjct: 514 FEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAY 573

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           VR  M+  GV+K PG +W++       F V DTS+   + I  +L  L    + AGY
Sbjct: 574 VRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGY 630



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 36/292 (12%)

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +FD+M ER+ VS+ T+I  YA    + EAF+LF  +  EG E+N   + T          
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTT---------- 51

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
              VL+LL  M   E                      LG+ +HG  ++  YG    +  A
Sbjct: 52  ---VLKLLVSMEWAE----------------------LGRIVHGCVLKVGYGSNTFIGTA 86

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI  YS    +  A  +F   + K +++W  M++ Y   DC  E+   F +M  +G +PN
Sbjct: 87  LIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPN 146

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             T A +L  C  + N   GK  HC +L +  +   L +   L+E+Y R G   +A   F
Sbjct: 147 NFTFAGVLKACLGLQNFDAGKTVHCSVL-KTNYERDLYVGVGLLELYTRCGDNDDAWRAF 205

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
             M + D + ++ +I+ +   G+   AL++F +M +  + P+  T  +VL A
Sbjct: 206 GDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQA 257


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/654 (29%), Positives = 332/654 (50%), Gaps = 41/654 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G    A + + + R+T    D    + + ++  CG + A+ +G  +H     +G+ 
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCF--TMSSVLLACGSLMAVKEGVAVHGVIEKIGIA 254

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + ++   L++ Y  F     A  +     ++  + WN +I  Y + G +  ++ ++  M
Sbjct: 255 GDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM 314

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               +  D  +  S ++ACG+  D+  G+ VH   I +  E      N L+ MY K G +
Sbjct: 315 IDGFVP-DMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDL 373

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A+ +FD    +D+V                                   TWN++  G 
Sbjct: 374 LAAQEVFDTTKCKDSV-----------------------------------TWNSLINGY 398

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
            ++G +K  LE    M+  E   DSV  V+ L   S +  +  G+ IH   ++  +    
Sbjct: 399 TQSGYYKEGLESFKMMK-MERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAEL 457

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            + N+L+ +Y++C ++     +F   +   II+WN++++   H D       +  EM   
Sbjct: 458 IIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTE 517

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G+ P+  T+  ILP+C+ +A  + GKE H YI +   F  ++ + N+L+EMY++ G +  
Sbjct: 518 GLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSG-FESNVPIGNALIEMYSKCGSLEN 576

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
              VF  M  +D VT+T+LI+ +G+ GEG+ ALK F++M  + + PD V  +A + ACSH
Sbjct: 577 CIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSH 636

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           SG+V EG + F+RM + Y + P++EH+AC+VDL  R+GLL +A+E I  MP  P +++W 
Sbjct: 637 SGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWG 696

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LL AC+   NT I +  ++K+LE   +++GYYVL++N+YA  G WD++  VR  M+  G
Sbjct: 697 ALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKG 756

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           ++K PG +W++       F   D S  Q  ++  LL  L  LM   GYV   +F
Sbjct: 757 LKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQF 810



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 165/599 (27%), Positives = 285/599 (47%), Gaps = 57/599 (9%)

Query: 6   SRLILNGLSVSQL--EKFIPK--KWKQPINNEHIMR-------INLLETL-KDFAGRGNL 53
           S +I +GLS+S +   K I K  + K PI++  + R       + L  ++ +     G  
Sbjct: 43  SLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLF 102

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           ++A   +T +R      D    +F  +I  C ++  L  G  +H  A+ +G E +  +  
Sbjct: 103 TQALGYYTEMREKKLQPDAF--TFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGN 160

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            L+  Y+ F   +NA ++ E  + R  + WN LIS Y  +GF+ +AL +Y + +   +  
Sbjct: 161 ALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVP 220

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLF 232
           D FT  SVL ACG +M V  G  VH  I+       + + N L+SMY KF ++  ARR+F
Sbjct: 221 DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVF 280

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
            KM  +D+V+WNTMI  YA  G  + + +LF++M +                    G   
Sbjct: 281 SKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID--------------------GFVP 320

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR-NAL 351
            +L + S +R                AC   G L++GK +H   + G   E + V  N L
Sbjct: 321 DMLSITSTIR----------------ACGQSGDLQVGKFVHKYLI-GSGFECDTVACNIL 363

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           I MY++C DL  A  +F  T  K  +TWNS+++GYT     +E    F+ M +   +P+ 
Sbjct: 364 IDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFK-MMKMERKPDS 422

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           VT   +L + +++A++  G+  HC +++   F   L++ NSL+++YA+ G++ +   VF 
Sbjct: 423 VTFVLLLSIFSQLADINQGRGIHCDVIKFG-FEAELIIGNSLLDVYAKCGEMDDLLKVFS 481

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            MS  D +++ ++IA      +  V  ++  EM    + PD  T++ +L  CS   +  +
Sbjct: 482 YMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQ 541

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           G K+        G    +     ++++Y + G L    ++   M        W  L+ A
Sbjct: 542 G-KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDV-VTWTALISA 598



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 178/353 (50%), Gaps = 11/353 (3%)

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           NV  WN+I       G F   L   + MR ++   D+      + +C+ +  L+LG  +H
Sbjct: 85  NVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVH 144

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
             A+   +     + NALI MYSR  DL +A  +F+  + +  ++WNS++SGY      E
Sbjct: 145 EHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWE 204

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           ++  ++ +   +G+ P+  T++S+L  C  +  ++ G   H  I +  +  + +++ N L
Sbjct: 205 DALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGD-VIIGNGL 263

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MY +  ++ EA+ VF  M+ +D VT+ ++I GY   G    ++KLF +M    + PD 
Sbjct: 264 LSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PDM 322

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC--MVDLYGRAGLLNKAKEI 571
           +++ + + AC  SG +  G+   + +    G   + +  AC  ++D+Y + G L  A+E+
Sbjct: 323 LSITSTIRACGQSGDLQVGKFVHKYLI---GSGFECDTVACNILIDMYAKCGDLLAAQEV 379

Query: 572 ITKMPYTPTSAMWATLL-GACQI-HRNTGIGEWAAEKLLETRPENSGYYVLIA 622
                    S  W +L+ G  Q  +   G+  +   K +E +P++  + +L++
Sbjct: 380 FDTTK-CKDSVTWNSLINGYTQSGYYKEGLESFKMMK-MERKPDSVTFVLLLS 430


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/556 (35%), Positives = 310/556 (55%), Gaps = 25/556 (4%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV--VH 198
           + WN ++S + ++GF  EA  ++ QM  +    +  ++  +L A      V  GR+    
Sbjct: 154 VSWNAMLSGFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAY-----VQNGRIEDAR 204

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
              D+  +W +   N L+  Y +  ++D AR LFD+M  RD +SWN MI+ YA  GL  E
Sbjct: 205 RLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSE 264

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A +LF E+       +V  W  +  G ++ G    +L+  +R+  +    + V+    + 
Sbjct: 265 ARRLFEELPIR----DVFAWTAMVSGFVQNG----MLDEATRIFEEMPEKNEVSWNAMIA 316

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
                  ++  +E+           +    N ++T Y++C ++  A ILF    ++  I+
Sbjct: 317 GYVQSQQIEKARELFDQMPSRNTSSW----NTMVTGYAQCGNIDQAKILFDEMPQRDCIS 372

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W +M+SGY     +EE+  LF +M R G   N   +A  L  CA +A L+ GK+ H  ++
Sbjct: 373 WAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV 432

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           + A F    +  N+L+ MY + G + EA  VF+ ++ +D V++ ++IAGY   G G+ AL
Sbjct: 433 K-AGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEAL 491

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LFE M K  IKPD VT+V VLSACSH+G V +G + F  M   YGI    +H+ CM+DL
Sbjct: 492 ALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDL 550

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L++A  ++  MP+ P +A W  LLGA +IH +T +GE AAEK+ E  P+NSG Y
Sbjct: 551 LGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMY 610

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+YAA+G W ++ ++R+ MRD GV+K+PG +WV+  N    F V D S+ +A+ IY
Sbjct: 611 VLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIY 670

Query: 679 PLLGGLTELMKDAGYV 694
             L  L   +K  G+V
Sbjct: 671 AYLEELDLELKKDGFV 686



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/508 (24%), Positives = 229/508 (45%), Gaps = 52/508 (10%)

Query: 44  LKDFAGRGNLSKAFEAFTRI-RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           L  +   GNLS A   F ++      S + +L  FA   F     K   Q          
Sbjct: 129 LSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM--------- 179

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
             L KN +    L++ Y       +A  L ++      + WN L+  YVR     +A  +
Sbjct: 180 --LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSL 237

Query: 163 YKQM----------------------QSRR------IRGDNFTYPSVLKACGEMMDVDFG 194
           + +M                      ++RR      IR D F + +++    +   +D  
Sbjct: 238 FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR-DVFAWTAMVSGFVQNGMLDEA 296

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
             +   +   +E S    NA+++ Y +  Q++ AR LFD+M  R+  SWNTM++ YA  G
Sbjct: 297 TRIFEEMPEKNEVSW---NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG 353

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              +A  LF EM +     + I+W  +  G  ++G  +  L L  +M+     L+  A  
Sbjct: 354 NIDQAKILFDEMPQR----DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALA 409

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L +C+ + AL+LGK++HG  V+  +       NAL+ MY +C  +  A+ +F+   EK
Sbjct: 410 CALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK 469

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            I++WN+M++GY      +E+  LF  M +  ++P+ VT+  +L  C+    +  G E+ 
Sbjct: 470 DIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYF 528

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE 493
             + +      +   +  ++++  R+G++ EA ++   M    D  T+ +L+    I G+
Sbjct: 529 NSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGD 588

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             +  K  E++   +++PD+  M  +LS
Sbjct: 589 TELGEKAAEKV--FEMEPDNSGMYVLLS 614



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 200/482 (41%), Gaps = 86/482 (17%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + WN  IS Y+R G    AL V+  M+ R                               
Sbjct: 61  VKWNRKISAYMRKGQCESALSVFNGMRRR------------------------------- 89

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
                  S   +NA++S Y    + D AR++F+KM +RD +SWN M+S Y   G    A 
Sbjct: 90  -------STVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAAR 142

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            LF +M E+    +V++WN +  G  + G  +   ++  +M  +    + ++    L A 
Sbjct: 143 ALFNQMPEK----DVVSWNAMLSGFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAY 194

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYILFKMTAEKSIITW 379
              G ++  + +  S +     ++E V  N L+  Y R K L  A  LF     +  I+W
Sbjct: 195 VQNGRIEDARRLFDSKM-----DWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISW 249

Query: 380 NSMLSGYTHLDCAEESAFLFREM---------------------------FRSGVEPNYV 412
           N M++GY       E+  LF E+                           F    E N V
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV 309

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           +  +++    +   ++  +E     L   M + +   WN++V  YA+ G + +AK +FD 
Sbjct: 310 SWNAMIAGYVQSQQIEKARE-----LFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDE 364

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M +RD +++ ++I+GY   G+   AL LF +M ++    +   +   LS+C+    +  G
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELG 424

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           ++   R+    G          ++ +YG+ G + +A ++   +      + W T++    
Sbjct: 425 KQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS-WNTMIAGYA 482

Query: 593 IH 594
            H
Sbjct: 483 RH 484



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 155/354 (43%), Gaps = 62/354 (17%)

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           +++ D V WN  ISAY  KG  + A  +F  M+      + +T+N +  G L    F   
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMISGYLSNNKFDCA 110

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
            ++  +M  ++                                           N +++ 
Sbjct: 111 RKVFEKMPDRDLI---------------------------------------SWNVMLSG 131

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +  +L  A  LF    EK +++WN+MLSG+      EE+  +F +M    +  N ++ 
Sbjct: 132 YVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISW 187

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
             +L      A +Q+G+      L  +  +  ++ WN L+  Y R  ++ +A+S+FD M 
Sbjct: 188 NGLLS-----AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP 242

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            RD++++  +I GY   G    A +LFEE+    I+ D     A++S    +G++ E  +
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRLFEEL---PIR-DVFAWTAMVSGFVQNGMLDEATR 298

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            FE M     +      +  M+  Y ++  + KA+E+  +MP   TS+ W T++
Sbjct: 299 IFEEMPEKNEV-----SWNAMIAGYVQSQQIEKARELFDQMPSRNTSS-WNTMV 346



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 32/266 (12%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C ++ AL  GKQLH   +  G +   +    L+  Y        A  + E+   +  + W
Sbjct: 415 CAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSW 474

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-- 201
           N +I+ Y R GF  EAL +++ M+   I+ D+ T   VL AC     VD G    + +  
Sbjct: 475 NTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQ 533

Query: 202 ------DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKG 254
                 +A H      +  ++ + G+ G++D A  L   M    DA +W  ++ A    G
Sbjct: 534 NYGITANAKH------YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHG 587

Query: 255 ---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY---- 307
              L ++A +   EM+ +   + V+  N  A     +G ++ V E+ S+MR +       
Sbjct: 588 DTELGEKAAEKVFEMEPDNSGMYVLLSNLYAA----SGRWREVREMRSKMRDKGVKKVPG 643

Query: 308 -----LDSVATVIGLGACSHVGALKL 328
                + +   +  +G CSH  A ++
Sbjct: 644 YSWVEIQNKTHIFTVGDCSHPEAERI 669



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           + +  ++ WN  +  Y R G+   A SVF+ M RR  VTY ++I+GY    +   A K+F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           E+M       D ++   +LS    +G +   +  F +M         +  +  M+  + +
Sbjct: 115 EKMPDR----DLISWNVMLSGYVKNGNLSAARALFNQMPE-----KDVVSWNAMLSGFAQ 165

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G + +A++I  +M        W  LL A
Sbjct: 166 NGFVEEARKIFDQM-LVKNEISWNGLLSA 193


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 181/520 (34%), Positives = 295/520 (56%), Gaps = 39/520 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y SVL  C     +  G+ VH+  I  C+E  +++   L+ +Y K   +  ARR+ D+M 
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           ER+ VSW  MIS Y+ +G   EA  LFVEM   G   N  T+ T+               
Sbjct: 73  ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATV--------------- 117

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                               L +C+     +LG++IH   ++  +  +  V ++L+ MY+
Sbjct: 118 --------------------LTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYA 157

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +   +  A  +F    E+ +++  +++SGY  L   EE+  LFR + R G+  NYVT AS
Sbjct: 158 KAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYAS 217

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L   + +A L HG++ H ++LR A    +++L NSL++MY++ G +  ++ +FD M  R
Sbjct: 218 VLTALSGLAALDHGRQVHSHVLR-AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER 276

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
             +++ +++ GY   G GR A++LF+ M + N++KPD VT +AVLS CSH G+   G + 
Sbjct: 277 TVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEI 336

Query: 536 FERMTSIY-GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           F  M +   G  P++EH+ C+VDL+GRAG + +A E I KMP+ PT+A+W +LLGAC++H
Sbjct: 337 FYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 396

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           +N  IGE+ A +LLE   EN+G YV+++N+YA+ G WD +  VR  M++  V K PG +W
Sbjct: 397 QNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSW 456

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           ++       F   D S+ + +E++  +  L+  +K+AGYV
Sbjct: 457 IELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYV 496



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 192/399 (48%), Gaps = 38/399 (9%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           +V    +  ++  C    A+ +G+++HA  I    E    L  +L+  Y       +A  
Sbjct: 7   EVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARR 66

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           +++    R  + W  +IS Y + G+ +EAL ++ +M       + FT+ +VL +C     
Sbjct: 67  VLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSG 126

Query: 191 VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
              GR +HS  I    E  +FV ++L+ MY K G++  ARR+FD + ERD VS   +IS 
Sbjct: 127 FQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISG 186

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           YA  GL +EA  LF  +Q EG+  N +T+ ++                            
Sbjct: 187 YAQLGLDEEALDLFRRLQREGMRSNYVTYASV---------------------------- 218

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
                  L A S + AL  G+++H   +R     Y  ++N+LI MYS+C  L ++  +F 
Sbjct: 219 -------LTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFD 271

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQ 428
              E+++I+WN+ML GY+      E+  LF+ M     V+P+ VT  ++L  C+      
Sbjct: 272 SMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMED 331

Query: 429 HGKE-FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
            G E F+  + ++  F   +  +  +V+++ R+G+V EA
Sbjct: 332 RGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEA 370



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 130/264 (49%), Gaps = 4/264 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  ++ RG  S+A   F  + ++  + +    +FA ++  C        G+Q+H+  I  
Sbjct: 83  ISGYSQRGYASEALHLFVEMLMSGTAPNEF--TFATVLTSCTSSSGFQLGRQIHSLVIKT 140

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
             E +  +   L+  YA       A  + +    R  +    +IS Y + G   EAL ++
Sbjct: 141 SFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLF 200

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           +++Q   +R +  TY SVL A   +  +D GR VHS  + A   + + + N+L+ MY K 
Sbjct: 201 RRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKC 260

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG-VEVNVITWNTI 281
           G +  +RR+FD M ER  +SWN M+  Y+  GL +EA +LF  M+EE  V+ + +T+  +
Sbjct: 261 GSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAV 320

Query: 282 AGGCLRTGNFKGVLELLSRMRTQE 305
             GC   G     LE+   M  Q+
Sbjct: 321 LSGCSHGGMEDRGLEIFYEMVNQK 344


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 201/656 (30%), Positives = 335/656 (51%), Gaps = 38/656 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G+L +    F ++       D    + + ++ C   + ++  G+ +H     L
Sbjct: 168 MSGYAKAGDLREGVLLFRKMHCCGVRPDAY--TISCVLKCIAGLGSIEDGEVVHGLLEKL 225

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G      +   L+ FYA  +   +A  + +    R  + WN +IS    +G Y +A+ ++
Sbjct: 226 GFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELF 285

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFG 223
            +M       D+ T  SVL AC E+  +  GRVVH            V    +S      
Sbjct: 286 VRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHG---------YSVKTGFIS------ 330

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           Q  +A               N ++  Y++   W+   ++F  M    V+ NV++W  +  
Sbjct: 331 QTSLA---------------NVLLDMYSNCSDWRSTNKIFRNM----VQKNVVSWTAMIT 371

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
              R G +  V  L   M  + T  D  A    L A +    LK GK +HG A+R    +
Sbjct: 372 SYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEK 431

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V NAL+ MY +C ++  A ++F     K +I+WN+++ GY+  + A E+  LF EM 
Sbjct: 432 VLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML 491

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
              + PN VT+  ILP  A +++L+ G+E H Y LRR    +  +  N+L++MY + G +
Sbjct: 492 LQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVA-NALIDMYVKCGAL 549

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
             A+ +FD +S ++ +++T ++AGYG+ G GR A+ LFE+M  + I PD  +  A+L AC
Sbjct: 550 LLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYAC 609

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           SHSGL  EG + F+ M   + I P+L+H+ CMVDL    G L +A E I  MP  P S++
Sbjct: 610 SHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSI 669

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W +LL  C+IHRN  + E  AE++ E  PEN+GYYVL+AN+YA    W+ + K++  +  
Sbjct: 670 WVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGG 729

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            G+R+  GC+W++A      F+ D+ ++ Q   I   L  + + M++ G+  K+++
Sbjct: 730 RGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKY 785



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 148/508 (29%), Positives = 240/508 (47%), Gaps = 49/508 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKN---PVLVPKLVTFYASFSLYNNACFLV 132
           S+  ++  C +V++L  GK+ H    A  L ++    VL  KLV  Y       NA  + 
Sbjct: 93  SYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVF 152

Query: 133 EN----SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
           +     S++R    W  L+S Y + G   E + ++++M    +R D +T   VLK    +
Sbjct: 153 DEMPQVSDVRV---WTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGL 209

Query: 189 MDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
             ++ G VVH  ++     S   V NAL++ Y K  +   A  +FD M  RD +SWN+MI
Sbjct: 210 GSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMI 269

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           S   S GL+ +A +LFV M  EG E                                   
Sbjct: 270 SGCTSNGLYDKAIELFVRMWLEGEE----------------------------------- 294

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
           LDS   +  L AC+ +  L LG+ +HG +V+  +    ++ N L+ MYS C D R    +
Sbjct: 295 LDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKI 354

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F+   +K++++W +M++ YT     ++ A LF+EM   G  P+   I S L   A    L
Sbjct: 355 FRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELL 414

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
           +HGK  H Y +R  M  + L + N+L+EMY + G + EAK +FD +  +D +++ +LI G
Sbjct: 415 KHGKSVHGYAIRNGM-EKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGG 473

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           Y        A  LF EM   Q++P+ VTM  +L A + S   +E  ++        G   
Sbjct: 474 YSRNNLANEAFSLFTEM-LLQLRPNAVTMTCILPAAA-SLSSLERGREMHAYALRRGYLE 531

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKM 575
                  ++D+Y + G L  A+ +  ++
Sbjct: 532 DDFVANALIDMYVKCGALLLARRLFDRL 559



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 134/529 (25%), Positives = 224/529 (42%), Gaps = 79/529 (14%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
            G+ L A A   G EK+P  VP                     S++      NL I    
Sbjct: 39  SGQALEAAASPRGAEKSPDWVP--------------------TSDV------NLHIQRLC 72

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV 211
           R G   EAL +   + S  +  D+ +Y +VL+ C E+  ++ G+  H  + A       +
Sbjct: 73  RSGDLEEALGL---LGSDGV--DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGM 127

Query: 212 HNAL----VSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEM 266
            N L    V MY K G ++ ARR+FD+M +  D   W  ++S YA  G  +E   LF +M
Sbjct: 128 DNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM 187

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
              GV  +  T + +                                   L   + +G++
Sbjct: 188 HCCGVRPDAYTISCV-----------------------------------LKCIAGLGSI 212

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           + G+ +HG   +  +G    V NAL+  Y++    + A ++F     + +I+WNSM+SG 
Sbjct: 213 EDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGC 272

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
           T     +++  LF  M+  G E +  T+ S+LP CA +  L  G+  H Y ++   F   
Sbjct: 273 TSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTG-FISQ 331

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
             L N L++MY+          +F  M +++ V++T++I  Y   G       LF+EM  
Sbjct: 332 TSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGL 391

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
              +PD   + + L A + + L+  G K         G+   L     ++++Y + G + 
Sbjct: 392 EGTRPDIFAITSALHAFAGNELLKHG-KSVHGYAIRNGMEKVLAVTNALMEMYVKCGNME 450

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA---EKLLETRP 612
           +AK I   +  +     W TL+G     RN    E  +   E LL+ RP
Sbjct: 451 EAKLIFDGV-VSKDMISWNTLIGG--YSRNNLANEAFSLFTEMLLQLRP 496


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 211/695 (30%), Positives = 341/695 (49%), Gaps = 82/695 (11%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           D +A ++  C        G+ +HA A+  GL  +  L   L+++Y   +    A  L + 
Sbjct: 27  DHYARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETA--GGAGGLRDA 84

Query: 135 SNIRYPLP--------WNLLISLYVRDGFYAEALCVYKQMQSRR-------IRGDN---- 175
             +   +P        WN L+S++ + G  A+A  V+ +M  R        + G N    
Sbjct: 85  RRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144

Query: 176 --------------------FTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF-VHNA 214
                               FT  +VL +C        GR VHS +      S   V N+
Sbjct: 145 FGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANS 204

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           +++MYGK G  + A  +F++M  R   SWN M+S     G    A  LF  M       +
Sbjct: 205 VLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGR----S 260

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIH 333
           +++WN +  G  + G     L+L SRM  + +      T+   L AC+++G +++GK++H
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 334 GSAVRGCYGEYENVRNALITMYSRCK---------------------------------D 360
              +R        V NALI+ Y++                                   D
Sbjct: 321 AYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGD 380

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           +  A  +F +   + ++ W +M+ GY      +E+  LFR M   G EPN  T+A++L +
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEV 479
           CA +A L +GK+ HC  +R ++      + N+++ MYARSG  P A+ +FD +  R++ +
Sbjct: 441 CASLACLDYGKQIHCRAIR-SLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETI 499

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           T+TS+I      G+G  A+ LFEEM +  ++PD +T V VLSACSH+G V EG++ ++++
Sbjct: 500 TWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQI 559

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGI 599
            + + I P++ H+ACMVDL  RAGL ++A+E I +MP  P +  W +LL AC++H+N  +
Sbjct: 560 KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAEL 619

Query: 600 GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659
            E AAEKLL   P NSG Y  IAN+Y+A G W   A++    ++  VRK  G +W    +
Sbjct: 620 AELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRS 679

Query: 660 VFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
               F  DD  + Q   +Y +   + E +K AG+V
Sbjct: 680 KIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFV 714


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 305/584 (52%), Gaps = 76/584 (13%)

Query: 136 NIRYP--LPWNLLISLYVRDGFYAEALCVYKQ-MQSRRIRGDNFTYPSVLKACGEMMDVD 192
           N R P    WN+ I  ++      EA+ +YK+ +Q    + DN+TYP + KAC  +  + 
Sbjct: 37  NTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIR 96

Query: 193 -----FGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
                 G V+H   D+     +FV NA++ +    G +D AR++FDK   RD VSWN+MI
Sbjct: 97  MGSEILGHVLHLGFDS----DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMI 152

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           + Y  +G   EA   + EM+ EG++                                   
Sbjct: 153 NGYVRRGWAYEALNFYREMKVEGIKP---------------------------------- 178

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR------NALITMYSRCKDL 361
            D V  +  + +C+ +  L LG+E H      CY E   ++      NAL+ MY +C +L
Sbjct: 179 -DEVTMIGVVSSCAQLEDLDLGRESH------CYIEENGLKLTVPLANALMDMYMKCGNL 231

Query: 362 RHA----------------YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
             A                 +LF    +K ++ WN+M+ GY H +  +E+  LF EM   
Sbjct: 232 ESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAM 291

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            + P+ VT+ S L  C+++  L  G   H YI +  + + ++ L  +L++MYA+ GK+ +
Sbjct: 292 NINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL-SLNVALGTALIDMYAKCGKITK 350

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A  VF  +  R+ +T+T++I+G  + G    A+  F EM  N + PD VT + +LSAC H
Sbjct: 351 AIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCH 410

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
            GLV EG+K F +M+S + + P+L+H++CMVDL GRAGLL +A+E+I  MP    + +W 
Sbjct: 411 GGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWG 470

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            L  AC+IH N  +GE AA KLL+  P +SG YVL+ANMY     W +  K R  MR  G
Sbjct: 471 ALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRG 530

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
           V K PGC+ ++   +   F+V D S+ Q+++IY  L  LT  ++
Sbjct: 531 VEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLE 574



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 202/426 (47%), Gaps = 27/426 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C ++  +  G ++    + LG + +  +   ++    S    + A  + + S +R  + W
Sbjct: 89  CARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSW 148

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+ YVR G+  EAL  Y++M+   I+ D  T   V+ +C ++ D+D GR  H  I+ 
Sbjct: 149 NSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEE 208

Query: 204 CH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              + ++ + NAL+ MY K G ++ AR+LFD M  +  VSW TM               L
Sbjct: 209 NGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM---------------L 253

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F EM ++    +V+ WN + GG +     K  L L + M+      D V  V  L ACS 
Sbjct: 254 FDEMPDK----DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQ 309

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +GAL +G  IH    +        +  ALI MY++C  +  A  +F+    ++ +TW ++
Sbjct: 310 LGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAI 369

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SG      A  +   F EM  + V P+ VT   +L  C     ++ G+++   +  +  
Sbjct: 370 ISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFN 429

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSL-----IAGYGIQGEGRV 496
            +  L  ++ +V++  R+G + EA+ +   M    D V + +L     I G  + GE R 
Sbjct: 430 LSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGE-RA 488

Query: 497 ALKLFE 502
           A KL +
Sbjct: 489 ASKLLQ 494



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 124/279 (44%), Gaps = 21/279 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +  RG   +A   +  +++     D V  +   ++  C +++ L  G++ H      
Sbjct: 152 INGYVRRGWAYEALNFYREMKVEGIKPDEV--TMIGVVSSCAQLEDLDLGRESHCYIEEN 209

Query: 104 GLEKNPVLVPKLVTFY-------ASFSLYNN---------ACFLVENSNIRYPLPWNLLI 147
           GL+    L   L+  Y       ++  L+++            L +    +  +PWN +I
Sbjct: 210 GLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMI 269

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW 207
             YV      EAL ++ +MQ+  I  D  T  S L AC ++  +D G  +H  I+  HE 
Sbjct: 270 GGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK-HEL 328

Query: 208 SLFVH--NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           SL V    AL+ MY K G++  A ++F ++  R++++W  +IS  A  G    A   F E
Sbjct: 329 SLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSE 388

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           M +  V  + +T+  +   C   G  +   +  S+M ++
Sbjct: 389 MIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSK 427


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 181/520 (34%), Positives = 295/520 (56%), Gaps = 39/520 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y SVL  C     +  G+ VH+  I  C+E  +++   L+ +Y K   +  ARR+ D+M 
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           ER+ VSW  MIS Y+ +G   EA  LFVEM   G   N  T+ T+               
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATV--------------- 584

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                               L +C+     +LG++IH   ++  +  +  V ++L+ MY+
Sbjct: 585 --------------------LTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYA 624

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +   +  A  +F    E+ +++  +++SGY  L   EE+  LFR + R G+  NYVT AS
Sbjct: 625 KAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYAS 684

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L   + +A L HG++ H ++LR A    +++L NSL++MY++ G +  ++ +FD M  R
Sbjct: 685 VLTALSGLAALDHGRQVHSHVLR-AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER 743

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
             +++ +++ GY   G GR A++LF+ M + N++KPD VT +AVLS CSH G+   G + 
Sbjct: 744 TVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEI 803

Query: 536 FERMTSIY-GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           F  M +   G  P++EH+ C+VDL+GRAG + +A E I KMP+ PT+A+W +LLGAC++H
Sbjct: 804 FYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 863

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           +N  IGE+ A +LLE   EN+G YV+++N+YA+ G WD +  VR  M++  V K PG +W
Sbjct: 864 QNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSW 923

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           ++       F   D S+ + +E++  +  L+  +K+AGYV
Sbjct: 924 IELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYV 963



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 220/484 (45%), Gaps = 62/484 (12%)

Query: 3   PSSSRLILNGLSVSQLEKFI----------PKKWKQPINNEHIMRINLLET-------LK 45
           PS+ +   N LSV   EK I          PK+    I+N    +  LL T       LK
Sbjct: 396 PSTLKTFFNQLSVE--EKMIWKITSLIFHRPKQVLSSISNPFSRQRILLSTFPANSPDLK 453

Query: 46  DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
                  L +A      + +     +V    +  ++  C    A+ +G+++HA  I    
Sbjct: 454 TLCSNRQLKEAL-----LEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCY 508

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E    L  +L+  Y       +A  +++    R  + W  +IS Y + G+ +EAL ++ +
Sbjct: 509 EPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVE 568

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           M       + FT+ +VL +C        GR +HS  I    E  +FV ++L+ MY K G+
Sbjct: 569 MLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGK 628

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  ARR+FD + ERD VS   +IS YA  GL +EA  LF  +Q EG+  N +T+ ++   
Sbjct: 629 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASV--- 685

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           L A S + AL  G+++H   +R     Y
Sbjct: 686 --------------------------------LTALSGLAALDHGRQVHSHVLRAKLPFY 713

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             ++N+LI MYS+C  L ++  +F    E+++I+WN+ML GY+      E+  LF+ M  
Sbjct: 714 VVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKE 773

Query: 405 SG-VEPNYVTIASILPLCARVANLQHGKE-FHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              V+P+ VT  ++L  C+       G E F+  + ++  F   +  +  +V+++ R+G+
Sbjct: 774 ENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGR 833

Query: 463 VPEA 466
           V EA
Sbjct: 834 VEEA 837



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 8/231 (3%)

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           EM   G+E  +    S+L  C     ++ G+  H +++ +  +   + L   L+ +Y + 
Sbjct: 467 EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMI-KTCYEPPVYLRTRLIVLYNKC 525

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
             + +A+ V D M  R+ V++T++I+GY  +G    AL LF EM  +   P+  T   VL
Sbjct: 526 RCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVL 585

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           ++C+ S     G +Q   +         +   + ++D+Y +AG + +A+ +   +P    
Sbjct: 586 TSCTSSSGFQLG-RQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDV 644

Query: 581 SAMWATLLGACQIHRNTGIGEWAAE--KLLETRPENSGYYVLIANMYAATG 629
            +  A + G  Q+    G+ E A +  + L+     S Y    + + A +G
Sbjct: 645 VSCTAIISGYAQL----GLDEEALDLFRRLQREGMRSNYVTYASVLTALSG 691


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/618 (32%), Positives = 326/618 (52%), Gaps = 50/618 (8%)

Query: 92   QGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
            +G+++HA     GL    + +   LV  Y   +  +NAC + +    +  + WN +IS  
Sbjct: 473  KGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGL 532

Query: 151  VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL- 209
              +  + EA+  +  M+   +   NF+  S L +C  +  +  GR +H       +W L 
Sbjct: 533  DHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHG---EGFKWGLD 589

Query: 210  ---FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS-KGLWKEAFQLFVE 265
                V NAL+++Y +   ++  +++F +M E D VSWN+ I A A  +    +A + F+E
Sbjct: 590  LDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLE 649

Query: 266  MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
            M + G   N +T+  I                                   L A S    
Sbjct: 650  MMQAGWRPNRVTFINI-----------------------------------LAAVSSFSV 674

Query: 326  LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLS 384
            L LG +IH   ++    +   + NAL+  Y +C+ +    I+F +M+  +  ++WNSM+S
Sbjct: 675  LGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMIS 734

Query: 385  GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH-CYILRRAMF 443
            GY H     ++  L   M + G + +  T A++L  CA VA L+ G E H C +  RA  
Sbjct: 735  GYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAV--RACL 792

Query: 444  NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
               +++ ++LV+MYA+ GK+  A   F+LM  R+  ++ S+I+GY   G G+ ALK+F  
Sbjct: 793  ESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTR 852

Query: 504  MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
            M ++   PDHVT V VLSACSH GLV EG K F+ M  +YG+ P++EHF+CMVDL GRAG
Sbjct: 853  MKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAG 912

Query: 564  LLNKAKEIITKMPYTPTSAMWATLLGAC--QIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
             + K ++ I  MP  P   +W T+LGAC     RNT +G+ AA+ L+E  P+N+  YVL+
Sbjct: 913  DVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLL 972

Query: 622  ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
            +NM+AA G W+ + + R  MR   V+K  GC+WV+  +    F+  D ++ + ++IY  L
Sbjct: 973  SNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKL 1032

Query: 682  GGLTELMKDAGYVVKEEF 699
              L   ++DAGYV + ++
Sbjct: 1033 KELMNKIRDAGYVPETKY 1050



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 135/514 (26%), Positives = 235/514 (45%), Gaps = 48/514 (9%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           +L     LH      G   +      L+  Y       +A  L +    +  + W+ LIS
Sbjct: 155 SLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLIS 214

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE--MMDVDFGRVVHS--CIDAC 204
            Y ++    EA  ++K + S  +  ++F   S L+AC +     +  G  +H+  C   C
Sbjct: 215 GYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPC 274

Query: 205 HEWSLFVHNALVSMYGK-FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
               + + N L+SMY    G +D A R+FD++  R++V+WN++IS Y  +G    AF+LF
Sbjct: 275 VS-DMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLF 333

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV-IGLGACSH 322
             MQ EGVE+N                          +R  E  L S+ T    L  C  
Sbjct: 334 SVMQMEGVELN--------------------------LRPNEYTLCSLVTAACSLADCGL 367

Query: 323 VGALKLGKEIHGSA-VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
           V   ++   I  S  +R  Y     V +AL+  ++R   +  A ++FK   +++ +T N 
Sbjct: 368 VLLEQMLTRIEKSGFLRDLY-----VGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNG 422

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK----EFHCYI 437
           ++ G       EE+A +F+EM +  VE N  ++  +L      +NL+ GK    E H Y+
Sbjct: 423 LMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYL 481

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
            R  + +  + + N+LV MY +   +  A SVF LM  +D V++ S+I+G         A
Sbjct: 482 FRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEA 541

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           +  F  M +N + P + ++++ LS+CS  G +  G +Q       +G+   +     ++ 
Sbjct: 542 VSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLG-RQIHGEGFKWGLDLDVSVSNALLT 600

Query: 558 LYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGA 590
           LY     +N+ +++  +MP Y   S  W + +GA
Sbjct: 601 LYAETDSINECQKVFFQMPEYDQVS--WNSFIGA 632



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 182/424 (42%), Gaps = 56/424 (13%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP- 142
           C  +  L  G+Q+H      GL+ +  +   L+T YA     N      E   + + +P 
Sbjct: 567 CSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSIN------ECQKVFFQMPE 620

Query: 143 -----WNLLISLYVR-DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
                WN  I    + +    +AL  + +M     R +  T+ ++L A      +  G  
Sbjct: 621 YDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ 680

Query: 197 VHSCIDACHEWSL----FVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYA 251
           +H+ I    ++S+     + NAL++ YGK  Q++    +F +M E RD VSWN+MIS Y 
Sbjct: 681 IHALI---LKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYL 737

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G+  +A  L   M + G +++  T+ T+                              
Sbjct: 738 HSGILHKAMDLVWPMMQRGQKLDGFTFATV------------------------------ 767

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                L AC+ V  L+ G E+H  AVR C      V +AL+ MY++C  + +A   F++ 
Sbjct: 768 -----LSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELM 822

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             ++I +WNSM+SGY      +++  +F  M + G  P++VT   +L  C+ V  +  G 
Sbjct: 823 PVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGY 882

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           +    +      +  +  ++ +V++  R+G V + +     M     +     + G   +
Sbjct: 883 KHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCR 942

Query: 492 GEGR 495
             GR
Sbjct: 943 ANGR 946



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 41/313 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN- 134
           +F +I+        L  G Q+HA  +   +  +  +   L+ FY       +   +    
Sbjct: 661 TFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRM 720

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           S  R  + WN +IS Y+  G   +A+ +   M  R  + D FT+ +VL AC  +  ++ G
Sbjct: 721 SERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERG 780

Query: 195 RVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             VH+C + AC E  + V +ALV MY K G++D A R F+ M  R+  SWN+MIS YA  
Sbjct: 781 MEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARH 840

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G  ++A ++F  M++ G   + +T             F GVL                  
Sbjct: 841 GHGQKALKIFTRMKQHGQSPDHVT-------------FVGVLS----------------- 870

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN--ALITMYSRCKDLRHAYILFK-M 370
                ACSHVG +  G + H  ++   YG    + +   ++ +  R  D++      K M
Sbjct: 871 -----ACSHVGLVDEGYK-HFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTM 924

Query: 371 TAEKSIITWNSML 383
             + +I+ W ++L
Sbjct: 925 PMDPNILIWRTVL 937



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 12/256 (4%)

Query: 76   SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
            +FA ++  C  V  L +G ++HACA+   LE + V+   LV  YA     + A    E  
Sbjct: 763  TFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELM 822

Query: 136  NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +R    WN +IS Y R G   +AL ++ +M+      D+ T+  VL AC  +  VD G 
Sbjct: 823  PVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGY 882

Query: 196  VVHSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYAS 252
                 +   +  S  + +   +V + G+ G V         M ++ + + W T++ A   
Sbjct: 883  KHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCR 942

Query: 253  KG-----LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
                   L + A ++ +E++ +     V+  N  A G    GN++ V+E    MR     
Sbjct: 943  ANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAG----GNWEDVVEARLAMRKAAVK 998

Query: 308  LDSVATVIGLGACSHV 323
             D+  + + +    H+
Sbjct: 999  KDAGCSWVNMKDGVHL 1014


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 203/622 (32%), Positives = 329/622 (52%), Gaps = 52/622 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           + L  GKQ+HA  +  G E N  ++  LV  Y       ++  L+ +   R  + WN ++
Sbjct: 216 EGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS--CIDACH 205
           S   ++    EAL   ++M    +  D FT  SVL AC  +  +  G+ +H+    +   
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           + + FV +ALV MY    QV   RR+FD M +R    WN MI+ Y+     KEA  LF+ 
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 394

Query: 266 MQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           M+E  G+  N  T   +   C+R+G F       SR                        
Sbjct: 395 MEESAGLLANSTTMAGVVPACVRSGAF-------SR------------------------ 423

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
                + IHG  V+        V+N L+ MYSR   +  A  +F    ++ ++TWN+M++
Sbjct: 424 ----KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479

Query: 385 GYTHLDCAEESAFLFREM-----------FRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           GY   +  E++  L  +M            R  ++PN +T+ +ILP CA ++ L  GKE 
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H Y ++  +  + + + ++LV+MYA+ G +  ++ VFD + +++ +T+  +I  YG+ G 
Sbjct: 540 HAYAIKNNLATD-VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGN 598

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G+ A+ L   M    +KP+ VT ++V +ACSHSG+V EG + F  M   YG+ P  +H+A
Sbjct: 599 GQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA 658

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           C+VDL GRAG + +A +++  MP     A  W++LLGA +IH N  IGE AA+ L++  P
Sbjct: 659 CVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 718

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
             + +YVL+AN+Y++ G WDK  +VR  M++ GVRK PGC+W++ G+    F+  D+S+ 
Sbjct: 719 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 778

Query: 673 QAQEIYPLLGGLTELMKDAGYV 694
           Q++++   L  L E M+  GYV
Sbjct: 779 QSEKLSGYLETLWERMRKEGYV 800



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 214/456 (46%), Gaps = 61/456 (13%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           S  R P  W  L+   VR     EA+  Y  M    I+ DN+ +P++LKA  ++ D++ G
Sbjct: 57  SQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELG 116

Query: 195 RVVHSCIDACHEW-------SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
           + +H+     H +       S+ V N LV++Y K G      ++FD++ ER+ VSWN++I
Sbjct: 117 KQIHA-----HVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           S+  S   W+ A + F  M +E VE +  T  ++   C             S +   E  
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTAC-------------SNLPMPE-- 216

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKDLRHAYI 366
                             L +GK++H   +R   GE  + + N L+ MY +   L  + +
Sbjct: 217 -----------------GLMMGKQVHAYGLRK--GELNSFIINTLVAMYGKLGKLASSKV 257

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           L      + ++TWN++LS     +   E+    REM   GVEP+  TI+S+LP C+ +  
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEM 317

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L+ GKE H Y L+    +E+  + ++LV+MY    +V   + VFD M  R    + ++IA
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377

Query: 487 GYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
           GY      + AL LF  M ++  +  +  TM  V+ AC  SG        F R  +I+G 
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG-------AFSRKEAIHGF 430

Query: 546 FPQ----LEHFA--CMVDLYGRAGLLNKAKEIITKM 575
             +     + F    ++D+Y R G ++ A  I  KM
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 136/538 (25%), Positives = 243/538 (45%), Gaps = 55/538 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVEN 134
           +F  ++     ++ +  GKQ+HA     G   + V V   LV  Y     +     + + 
Sbjct: 99  AFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 158

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM---DV 191
            + R  + WN LIS       +  AL  ++ M    +   +FT  SV+ AC  +     +
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGL 218

Query: 192 DFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
             G+ VH+      E + F+ N LV+MYGK G++  ++ L      RD V+WNT++S+  
Sbjct: 219 MMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                 EA +   EM  EGVE +  T +++                              
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSV------------------------------ 308

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                L ACSH+  L+ GKE+H  A++ G   E   V +AL+ MY  CK +     +F  
Sbjct: 309 -----LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQH 429
             ++ I  WN+M++GY+  +  +E+  LF  M  S G+  N  T+A ++P C R      
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
            +  H ++++R + +    + N+L++MY+R GK+  A  +F  M  RD VT+ ++I GY 
Sbjct: 424 KEAIHGFVVKRGL-DRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query: 490 IQGEGRVALKLFEEM-----------NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
                  AL L  +M           ++  +KP+ +T++ +L +C+    + +G K+   
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHA 541

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
                 +   +   + +VD+Y + G L  ++++  ++P       W  ++ A  +H N
Sbjct: 542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 124/257 (48%), Gaps = 15/257 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  C +  A ++ + +H   +  GL+++  +   L+  Y+     + A  +    
Sbjct: 407 TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS--RRI---------RGDNFTYPSVLKA 184
             R  + WN +I+ YV    + +AL +  +MQ+  R++         + ++ T  ++L +
Sbjct: 467 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPS 526

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           C  +  +  G+ +H+  I       + V +ALV MY K G + ++R++FD++ +++ ++W
Sbjct: 527 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 586

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           N +I AY   G  +EA  L   M  +GV+ N +T+ ++   C  +G     L +   M+ 
Sbjct: 587 NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKP 646

Query: 304 Q---ETYLDSVATVIGL 317
               E   D  A V+ L
Sbjct: 647 DYGVEPSSDHYACVVDL 663



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 7/235 (2%)

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W  +L      +   E+   + +M   G++P+     ++L   A + +++ GK+ H ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +     + + + N+LV +Y + G       VFD +S R++V++ SLI+      +  +AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFA--CM 555
           + F  M    ++P   T+V+V++ACS+  L +       +    YG+   +L  F    +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSN--LPMPEGLMMGKQVHAYGLRKGELNSFIINTL 242

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA-CQIHRNTGIGEWAAEKLLE 609
           V +YG+ G L  +K ++           W T+L + CQ  +     E+  E +LE
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDL-VTWNTVLSSLCQNEQLLEALEYLREMVLE 296


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/629 (31%), Positives = 326/629 (51%), Gaps = 46/629 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + AH+I    + K L +GKQLHA  I  G   N  L    +  Y+     +    L +  
Sbjct: 77  TVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKM 136

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD---NFTYPSVLKACGEMMDVD 192
           + R  + W  +I+ +  +  + EAL  + QM   RI G+    F   SVL+AC  +  + 
Sbjct: 137 SQRNMVSWTSIITGFAHNSRFQEALSSFCQM---RIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 193 FGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
           FG  VH  +  C     LFV + L  MY K G++  A + F++M  +DAV W +MI  + 
Sbjct: 194 FGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFV 253

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G +K+A   ++                                   +M T + ++D  
Sbjct: 254 KNGDFKKALTAYM-----------------------------------KMVTDDVFIDQH 278

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKDLRHAYILFKM 370
                L ACS + A   GK +H + ++  + EYE  + NAL  MYS+  D+  A  +F++
Sbjct: 279 VLCSTLSACSALKASSFGKSLHATILKLGF-EYETFIGNALTDMYSKSGDMVSASNVFQI 337

Query: 371 TAE-KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
            ++  SI++  +++ GY  +D  E++   F ++ R G+EPN  T  S++  CA  A L+H
Sbjct: 338 HSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEH 397

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G + H  +++   F     + ++LV+MY + G    +  +FD +   DE+ + +L+  + 
Sbjct: 398 GSQLHGQVVKFN-FKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFS 456

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G GR A++ F  M    +KP+ VT V +L  CSH+G+V +G   F  M  IYG+ P+ 
Sbjct: 457 QHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKE 516

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH++C++DL GRAG L +A++ I  MP+ P    W + LGAC+IH +    ++AA+KL++
Sbjct: 517 EHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMK 576

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             PENSG +VL++N+YA    W+ +  +R  ++D  + K+PG +WVD  N    F V+D 
Sbjct: 577 LEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDW 636

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
           S+ Q +EIY  L  L + +K  GYV + E
Sbjct: 637 SHPQKKEIYEKLDNLLDQIKRIGYVPQTE 665



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/454 (21%), Positives = 183/454 (40%), Gaps = 48/454 (10%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALG 104
           FA      +A  +F ++RI       +   FA   ++  C  + A+  G Q+H   +  G
Sbjct: 151 FAHNSRFQEALSSFCQMRIEGE----IATQFALSSVLQACTSLGAIQFGTQVHCLVVKCG 206

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
                 +   L   Y+     ++AC   E    +  + W  +I  +V++G + +AL  Y 
Sbjct: 207 FGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYM 266

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           +M +  +  D     S L AC  +    FG+ +H+ I     E+  F+ NAL  MY K G
Sbjct: 267 KMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSG 326

Query: 224 QVDVARRLFDKMLERDA---VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
            +  A  +F   +  D    VS   +I  Y      ++A   FV+++  G+E N  T+ +
Sbjct: 327 DMVSASNVF--QIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTS 384

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +                                   + AC++   L+ G ++HG  V+  
Sbjct: 385 L-----------------------------------IKACANQAKLEHGSQLHGQVVKFN 409

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +     V + L+ MY +C    H+  LF        I WN+++  ++       +   F 
Sbjct: 410 FKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFN 469

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M   G++PN VT  ++L  C+    ++ G  +   + +          ++ ++++  R+
Sbjct: 470 GMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRA 529

Query: 461 GKVPEAKSVFDLMSRRDEV-TYTSLIAGYGIQGE 493
           GK+ EA+   + M     V  + S +    I G+
Sbjct: 530 GKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGD 563



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 159/384 (41%), Gaps = 52/384 (13%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALG 104
           F   G+  KA  A+ ++     + DV +D       +  C  +KA + GK LHA  + LG
Sbjct: 252 FVKNGDFKKALTAYMKM----VTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLG 307

Query: 105 LEKNPVLVPKLVTFYA-SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            E    +   L   Y+ S  + + +     +S+    +    +I  YV      +AL  +
Sbjct: 308 FEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTF 367

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKF 222
             ++ R I  + FT+ S++KAC     ++ G  +H   +    +   FV + LV MYGK 
Sbjct: 368 VDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKC 427

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G  D + +LFD++   D ++WNT++  ++  GL + A + F  M   G++ N +T+  + 
Sbjct: 428 GLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLL 487

Query: 283 GGCLRTGNFKGVLELLSRMRT------QETYLDSVATVIG-------------------- 316
            GC   G  +  L   S M        +E +   V  ++G                    
Sbjct: 488 KGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPN 547

Query: 317 -LGACSHVGALKLGKEIHGSAVRGCYG---------EYENVRNALITMYSRCKDLRHAYI 366
             G CS +GA K    IHG   R  +          E       L  +Y++ K       
Sbjct: 548 VFGWCSFLGACK----IHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQS 603

Query: 367 LFKMTAEKSIITWNSMLSGYTHLD 390
           L KM  + ++    + L GY+ +D
Sbjct: 604 LRKMIKDGNM----NKLPGYSWVD 623


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 203/622 (32%), Positives = 328/622 (52%), Gaps = 52/622 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           + L  GKQ+HA  +  G E N  ++  LV  Y       ++  L+ +   R  + WN ++
Sbjct: 216 EGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS--CIDACH 205
           S   ++    EAL   ++M    +  D FT  SVL AC  +  +  G+ +H+    +   
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           + + FV +ALV MY    QV   RR+FD M +R    WN MI+ Y+     KEA  LF+ 
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 394

Query: 266 MQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           M+E  G+  N  T   +   C+R+G F       SR                        
Sbjct: 395 MEESAGLLANSTTMAGVVPACVRSGAF-------SRKEA--------------------- 426

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
                  IHG  V+        V+N L+ MYSR   +  A  +F    ++ ++TWN+M++
Sbjct: 427 -------IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479

Query: 385 GYTHLDCAEESAFLFREM-----------FRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           GY   +  E++  L  +M            R  ++PN +T+ +ILP CA ++ L  GKE 
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H Y ++  +  + + + ++LV+MYA+ G +  ++ VFD + +++ +T+  +I  YG+ G 
Sbjct: 540 HAYAIKNNLATD-VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGN 598

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G+ A+ L   M    +KP+ VT ++V +ACSHSG+V EG + F  M   YG+ P  +H+A
Sbjct: 599 GQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA 658

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           C+VDL GRAG + +A +++  MP     A  W++LLGA +IH N  IGE AA+ L++  P
Sbjct: 659 CVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 718

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
             + +YVL+AN+Y++ G WDK  +VR  M++ GVRK PGC+W++ G+    F+  D+S+ 
Sbjct: 719 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 778

Query: 673 QAQEIYPLLGGLTELMKDAGYV 694
           Q++++   L  L E M+  GYV
Sbjct: 779 QSEKLSGYLETLWERMRKEGYV 800



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 214/456 (46%), Gaps = 61/456 (13%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           S  R P  W  L+   VR     EA+  Y  M    I+ DN+ +P++LKA  ++ D++ G
Sbjct: 57  SQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELG 116

Query: 195 RVVHSCIDACHEW-------SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
           + +H+     H +       S+ V N LV++Y K G      ++FD++ ER+ VSWN++I
Sbjct: 117 KQIHA-----HVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           S+  S   W+ A + F  M +E VE +  T  ++   C             S +   E  
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTAC-------------SNLPMPE-- 216

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKDLRHAYI 366
                             L +GK++H   +R   GE  + + N L+ MY +   L  + +
Sbjct: 217 -----------------GLMMGKQVHAYGLRK--GELNSFIINTLVAMYGKLGKLASSKV 257

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           L      + ++TWN++LS     +   E+    REM   GVEP+  TI+S+LP C+ +  
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEM 317

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L+ GKE H Y L+    +E+  + ++LV+MY    +V   + VFD M  R    + ++IA
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377

Query: 487 GYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
           GY      + AL LF  M ++  +  +  TM  V+ AC  SG        F R  +I+G 
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG-------AFSRKEAIHGF 430

Query: 546 FPQ----LEHFA--CMVDLYGRAGLLNKAKEIITKM 575
             +     + F    ++D+Y R G ++ A  I  KM
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 136/538 (25%), Positives = 243/538 (45%), Gaps = 55/538 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVEN 134
           +F  ++     ++ +  GKQ+HA     G   + V V   LV  Y     +     + + 
Sbjct: 99  AFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 158

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM---MDV 191
            + R  + WN LIS       +  AL  ++ M    +   +FT  SV+ AC  +     +
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGL 218

Query: 192 DFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
             G+ VH+      E + F+ N LV+MYGK G++  ++ L      RD V+WNT++S+  
Sbjct: 219 MMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                 EA +   EM  EGVE +  T +++                              
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSV------------------------------ 308

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                L ACSH+  L+ GKE+H  A++ G   E   V +AL+ MY  CK +     +F  
Sbjct: 309 -----LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQH 429
             ++ I  WN+M++GY+  +  +E+  LF  M  S G+  N  T+A ++P C R      
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
            +  H ++++R + +    + N+L++MY+R GK+  A  +F  M  RD VT+ ++I GY 
Sbjct: 424 KEAIHGFVVKRGL-DRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query: 490 IQGEGRVALKLFEEM-----------NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
                  AL L  +M           ++  +KP+ +T++ +L +C+    + +G K+   
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHA 541

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
                 +   +   + +VD+Y + G L  ++++  ++P       W  ++ A  +H N
Sbjct: 542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 124/257 (48%), Gaps = 15/257 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  C +  A ++ + +H   +  GL+++  +   L+  Y+     + A  +    
Sbjct: 407 TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS--RRI---------RGDNFTYPSVLKA 184
             R  + WN +I+ YV    + +AL +  +MQ+  R++         + ++ T  ++L +
Sbjct: 467 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPS 526

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           C  +  +  G+ +H+  I       + V +ALV MY K G + ++R++FD++ +++ ++W
Sbjct: 527 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 586

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           N +I AY   G  +EA  L   M  +GV+ N +T+ ++   C  +G     L +   M+ 
Sbjct: 587 NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKP 646

Query: 304 Q---ETYLDSVATVIGL 317
               E   D  A V+ L
Sbjct: 647 DYGVEPSSDHYACVVDL 663



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 7/235 (2%)

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W  +L      +   E+   + +M   G++P+     ++L   A + +++ GK+ H ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +     + + + N+LV +Y + G       VFD +S R++V++ SLI+      +  +AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFA--CM 555
           + F  M    ++P   T+V+V++ACS+  L +       +    YG+   +L  F    +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSN--LPMPEGLMMGKQVHAYGLRKGELNSFIINTL 242

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA-CQIHRNTGIGEWAAEKLLE 609
           V +YG+ G L  +K ++           W T+L + CQ  +     E+  E +LE
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDL-VTWNTVLSSLCQNEQLLEALEYLREMVLE 296


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 206/645 (31%), Positives = 333/645 (51%), Gaps = 79/645 (12%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL----YNNACF-LVENS 135
           I C    K++ Q KQ+ +    +GLE +   + KL+ F A  SL    Y    F  V++ 
Sbjct: 101 IECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDP 160

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           ++     +N+++ +Y + G   + L +++Q++   +  D FTYP VLKA G + DV  G 
Sbjct: 161 SL---FVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGE 217

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            V   I     +   +V+N+L+ MY +   V+ A++LFD+M  RD+VSWN MIS Y    
Sbjct: 218 KVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCR 277

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
            +++A   F EMQ+EG E                                    D    V
Sbjct: 278 RFEDAINTFREMQQEGNEKP----------------------------------DEATVV 303

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR----------------- 357
             L AC+ +  L+LG EIH + VR   G    + NAL+ MY++                 
Sbjct: 304 STLSACTALKNLELGDEIH-NYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMK 362

Query: 358 --------------CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
                         C DLR A  LF  +  + ++ W +M++GY      +++  LFREM 
Sbjct: 363 NVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 422

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
              ++P+  T+ ++L  CA++  L+ GK  H Y L        +++  +L+EMY++ G V
Sbjct: 423 IQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGY-LDENRITMDVVVGTALIEMYSKCGCV 481

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            ++  +F  +  +D  ++TS+I G  + G+   AL+LF EM +   KPD +T + VLSAC
Sbjct: 482 DKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSAC 541

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS-- 581
           SH GLV EG++ F  M  ++ I P++EH+ C++DL GRAGLL++A+E+I ++P       
Sbjct: 542 SHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIV 601

Query: 582 -AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
             ++  LL AC+IH N  +GE  A+KL      +S  + L+AN+YA+   W+   KVR  
Sbjct: 602 VPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRK 661

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           M++LGV+K+PGC+ ++   +   FLV D S+ +  EI  +L  +T
Sbjct: 662 MKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIEICSMLNRVT 706



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 205/428 (47%), Gaps = 7/428 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K +A RG L K    F ++R      D    ++  ++   G ++ + QG+++    +  
Sbjct: 169 VKIYAKRGILRKVLLLFQQLREDGLWPDGF--TYPFVLKAIGCLRDVRQGEKVRGFIVKT 226

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G++ +  +   L+  Y   S   NA  L +    R  + WN++IS YVR   + +A+  +
Sbjct: 227 GMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 286

Query: 164 KQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222
           ++MQ     + D  T  S L AC  + +++ G  +H+ +     ++  + NAL+ MY K 
Sbjct: 287 REMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKC 346

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +++AR +FD+M  ++ + W +MIS Y + G  +EA  LF    ++    +V+ W  + 
Sbjct: 347 GCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLF----DKSPVRDVVLWTAMI 402

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G ++  +F   + L   M+ Q+   D    V  L  C+ +GAL+ GK IHG        
Sbjct: 403 NGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIT 462

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V  ALI MYS+C  +  +  +F    +K   +W S++ G        E+  LF EM
Sbjct: 463 MDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEM 522

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            R G +P+ +T   +L  C+    ++ G+ F   + +       +  +  ++++  R+G 
Sbjct: 523 ERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGL 582

Query: 463 VPEAKSVF 470
           + EA+ + 
Sbjct: 583 LDEAEELI 590


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 206/645 (31%), Positives = 325/645 (50%), Gaps = 49/645 (7%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC--FLVENSNIRYPLPWNLLISLYV 151
           + L A A     +  PV    LV  YA+      A   F       R  +  N +IS Y 
Sbjct: 73  RDLPAAATLFCADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYA 132

Query: 152 RDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH---SCIDACHEW 207
           R    A A+ V++ +  S  +R D++++ ++L A G + ++          S + +    
Sbjct: 133 RASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGG 192

Query: 208 SLFVHNALVSMYGKFGQVDV---ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           +L V NALV++Y K    +    AR++ D+M  +D ++W TM+  Y  +G    A  +F 
Sbjct: 193 ALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFE 252

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           E+  +      + WN +  G + +G      EL  RM  +   LD       L AC++VG
Sbjct: 253 EVDGK----FDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVG 308

Query: 325 ALKLGKEIHGSAVRGCYGEYEN----VRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
               GK +HG  +R            V NAL+T YS+C ++  A  +F     K +++WN
Sbjct: 309 LFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWN 368

Query: 381 SMLSGYTHLDC-------------------------------AEESAFLFREMFRSGVEP 409
           ++LSGY    C                               AE++  LF +M    V+P
Sbjct: 369 TILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKP 428

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
              T A  +  C  +  L+HGK+ H +I++   F       N+L+ MYAR G V EA  +
Sbjct: 429 CDYTYAGAIAACGELGALKHGKQLHGHIVQLG-FEGSNSAGNALITMYARCGAVKEAHLM 487

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F +M   D V++ ++I+  G  G GR AL+LF+ M    I PD ++ + VL+AC+HSGLV
Sbjct: 488 FLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLV 547

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG + FE M   +GI P  +H+  ++DL GRAG + +A+++I  MP+ PT ++W  +L 
Sbjct: 548 DEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILS 607

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
            C+   +  +G  AA++L +  P++ G Y+L++N Y+A GCW   A+VR  MRD GV+K 
Sbjct: 608 GCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKE 667

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           PGC+W++AGN    FLV DT + +A E+Y  L  +   M+  GYV
Sbjct: 668 PGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYV 712



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 148/374 (39%), Gaps = 48/374 (12%)

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT--AEKSIITWNSMLSG 385
           L +++  +A   C         +L+  Y+    L  A   F     A +  +  N+++S 
Sbjct: 71  LSRDLPAAATLFCADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISA 130

Query: 386 YTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANL--QHGKEFHCYILRRA- 441
           Y     A  +  +FR +  SG + P+  +  ++L     + N+  +H  + HC +L+   
Sbjct: 131 YARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGA 190

Query: 442 --------------------------------MFNEHLLLWNSLVEMYARSGKVPEAKSV 469
                                           M N+  L W ++V  Y R G V  A+SV
Sbjct: 191 GGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSV 250

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+ +  + +V + ++I+GY   G    A +LF  M   ++  D  T  +VLSAC++ GL 
Sbjct: 251 FEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLF 310

Query: 530 VEGQK---QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
             G+    Q  R+   +     L     +V  Y + G +  A+ I   M      + W T
Sbjct: 311 AHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVS-WNT 369

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           +L     +  +   + A E   E   +N   ++++ + Y   G  +   K+   MR   V
Sbjct: 370 ILSG---YVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENV 426

Query: 647 RKIPGCAWVDAGNV 660
           +    C +  AG +
Sbjct: 427 KP---CDYTYAGAI 437



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 15/221 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--CFLVE 133
           ++A  I  CG++ AL  GKQLH   + LG E +      L+T YA       A   FLV 
Sbjct: 432 TYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVM 491

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             NI   + WN +IS   + G   EAL ++ +M +  I  D  ++ +VL AC     VD 
Sbjct: 492 -PNID-SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDE 549

Query: 194 GRVVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMIS 248
           G      +    ++ +      +  L+ + G+ G++  AR L   M  E     W  ++S
Sbjct: 550 GFRYFESMK--RDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILS 607

Query: 249 AYASKG---LWKEAFQLFVEMQEEGVEVNVITWNTI-AGGC 285
              + G   L   A     +M  +     ++  NT  A GC
Sbjct: 608 GCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGC 648


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 205/619 (33%), Positives = 328/619 (52%), Gaps = 41/619 (6%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA  I  G+  +     KL+  YA      +A  + + S       WN +I  Y R G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV-HSCIDACHEWSLFVHN 213
              EAL +Y +M S  +R D+ TY  VLKAC   +D+  G       +D  +   +FV  
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA 144

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           A++++Y K G++D A R+FDKM  RD                                  
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRD---------------------------------- 170

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
            ++ W T+  G  + G  +  +++  +M  +    D V  +  + AC+ +G  K+G  IH
Sbjct: 171 -LVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIH 229

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G  +R        V+ +L+ MY++   L  A  +F+    K++I+W++++SG+     A 
Sbjct: 230 GYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAG 289

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
            +  L  +M   G +P+ V++ S+L  C++V  L+ GK  H YI+RR  F+   +   ++
Sbjct: 290 NALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFD--CVSSTAV 347

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MY++ G +  A++VFD +S RD +++ ++IA YGI G G  AL LF +M +  +KPDH
Sbjct: 348 IDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDH 407

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
            T  ++LSA SHSGLV +G+  F  M + Y I P  +H+ACMVDL  RAG + +A+E+I 
Sbjct: 408 ATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIE 467

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
            M   P  A+W  LL  C  H    IGE AA+K+LE  P++ G Y L++N +A    WD+
Sbjct: 468 SMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDE 527

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           +A+VR  M+  G++K+PG + ++       FL++D S+ Q +EI  +LG L   MK  GY
Sbjct: 528 VAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGY 587

Query: 694 VVKEEFC---SEEEIVEEI 709
           V K EF     EEE+ E +
Sbjct: 588 VPKTEFVLHNLEEEVKERM 606



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/469 (24%), Positives = 215/469 (45%), Gaps = 47/469 (10%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALG 104
           ++ RG + +A   + R+    AS  V  DS  +  ++  C +   L  G++    A+  G
Sbjct: 80  YSRRGAMFEALSLYHRM----ASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQG 135

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   ++  YA     + A  + +    R  + W  +I+   ++G   EA+ +Y+
Sbjct: 136 YGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYR 195

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           QM  +R+ GD      +++AC  +     G  +H   I       + V  +LV MY K G
Sbjct: 196 QMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNG 255

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +++A  +F +ML ++ +SW+ +IS +A  G    A QL V+MQ  G +           
Sbjct: 256 HLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKP---------- 305

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                    DSV+ V  L ACS VG LKLGK +HG  VR  + +
Sbjct: 306 -------------------------DSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFD 340

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             +   A+I MYS+C  L  A  +F   + +  I+WN++++ Y      EE+  LF +M 
Sbjct: 341 CVS-STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMR 399

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
            + V+P++ T AS+L   +    ++ G+ +   ++           +  +V++ +R+G+V
Sbjct: 400 ETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRV 459

Query: 464 PEAKSVFDLMSRRDEVT-YTSLIAGYGIQGE---GRVALKLFEEMNKNQ 508
            EA+ + + M     +  + +L++G    G+   G +A K   E+N + 
Sbjct: 460 EEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDD 508


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 189/561 (33%), Positives = 310/561 (55%), Gaps = 50/561 (8%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           +N +IS ++ +GF  E    Y++M++  +  D FT+P  +KAC +++++   + +H  + 
Sbjct: 27  FNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI---KKIHGLLF 83

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               E  +F+ +ALV+ Y KFG ++ A+  F+++  RD                      
Sbjct: 84  KFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRD---------------------- 121

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGAC 320
                        V+ WN +  G  + G F+ VLE   RM   E+ + S  TV G L   
Sbjct: 122 -------------VVLWNAMVNGYAQIGQFEMVLETFRRM-NDESVVPSRFTVTGILSVF 167

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           + +G L  G+ IHG A++  Y     V N+LI MY +CK +  A  +F+M  EK I +WN
Sbjct: 168 AVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWN 227

Query: 381 SMLSGYTHLDCAEESAFL--FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           S+ S   H  C +    L     M  +G++P+ VT+ ++LP C+ +A L HG+E H Y++
Sbjct: 228 SIXS--VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI 285

Query: 439 RRAMFNE-----HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
              +  +      +LL N++++MYA+ G + +A  VF+ M  +D  ++  +I GYG+ G 
Sbjct: 286 VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGY 345

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  AL++F  M + Q+KPD VT V VLSACSH+G V +G+    +M S Y + P +EH+ 
Sbjct: 346 GNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYT 405

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           C++D+ GRAG L++A E+   MP      +W  LL AC++H++  + E AA+++ E  PE
Sbjct: 406 CVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPE 465

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           + G YVL++N+Y A G ++++ +VR  MR   VRK PGC+W++  N    F+  D ++ +
Sbjct: 466 HCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPE 525

Query: 674 AQEIYPLLGGLTELMKDAGYV 694
           A  IY  L  LT  + + GYV
Sbjct: 526 AYSIYAGLNSLTARLCEHGYV 546



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 201/451 (44%), Gaps = 55/451 (12%)

Query: 26  WKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCG 85
           +  P +  ++   N +  +  F   G   + FE + ++R    +  V+ D F    F C 
Sbjct: 15  FSDPTHEINVFAFNAI--ISGFITNGFPEEGFEFYQKMR----NEGVMPDKFT---FPCA 65

Query: 86  KVKA---LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
            +KA   + + K++H      GLE +  +   LV  Y  F L  +A    E   IR  + 
Sbjct: 66  -IKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVL 124

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN +++ Y + G +   L  +++M    +    FT   +L     M D++ GR++H   +
Sbjct: 125 WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAM 184

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
              ++  + V N+L+ MYGK   ++ A  +F+ M E+D  SWN++ S +   G      +
Sbjct: 185 KMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLR 244

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           L   M   G++ +++T  T+                                   L ACS
Sbjct: 245 LLDRMLGAGIQPDLVTVTTV-----------------------------------LPACS 269

Query: 322 HVGALKLGKEIHGSAVRGCYG----EYENV--RNALITMYSRCKDLRHAYILFKMTAEKS 375
           H+ AL  G+EIHG  +    G    + ++V  +NA+I MY++C  +R A+++F+    K 
Sbjct: 270 HLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKD 329

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           + +WN M+ GY       E+  +F  M    ++P+ VT   +L  C+    +  G+ F  
Sbjct: 330 VASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLA 389

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
            +  +      +  +  +++M  R+G++ EA
Sbjct: 390 QMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 420


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 204/642 (31%), Positives = 338/642 (52%), Gaps = 47/642 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  + A+  G ++H+ A   GLE +  +   LV FYA   +   A  L  + 
Sbjct: 111 TYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  + WN +I+     G   +A+ +  QMQ   I  ++ T   VL   GE   +  G+
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  C+    +  + V   L+ MY K   +  AR++FD M  R+ VSW+ MI       
Sbjct: 231 ALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMI------- 283

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                                       GG + +   K  LEL  +M  ++  +D     
Sbjct: 284 ----------------------------GGYVASDCMKEALELFDQMILKDA-MDPTPVT 314

Query: 315 IG--LGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKM 370
           +G  L AC+ +  L  G+++H   ++   G   ++   N L++MY++C  +  A   F  
Sbjct: 315 LGSVLRACAKLTDLSRGRKLHCYIIK--LGSVLDILLGNTLLSMYAKCGVIDDAIRFFDE 372

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              K  +++++++SG      A  +  +FR M  SG++P+  T+  +LP C+ +A LQHG
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
              H Y++ R  F    L+ N+L++MY++ GK+  A+ VF+ M R D V++ ++I GYGI
Sbjct: 433 FCSHGYLIVRG-FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGI 491

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G G  AL LF ++    +KPD +T + +LS+CSHSGLV+EG+  F+ M+  + I P++E
Sbjct: 492 HGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRME 551

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H  CMVD+ GRAGL+++A   I  MP+ P   +W+ LL AC+IH+N  +GE  ++K+   
Sbjct: 552 HCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSL 611

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            PE++G +VL++N+Y+A G WD  A +R   +D G++KIPGC+W++   +   F+  D S
Sbjct: 612 GPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQS 671

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
           ++Q  +I   L  L   MK  GY  +  F     EEE  E+I
Sbjct: 672 HLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQI 713



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/523 (28%), Positives = 256/523 (48%), Gaps = 47/523 (8%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           V +++ H++  C + K+L + K++H   +      +  ++ KL   Y S     N   L 
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC----NQVVLA 62

Query: 133 ENSNIRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
                  P P    WN +I  Y  +G +  A+ +Y  M    +R + +TYP VLKAC  +
Sbjct: 63  RRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGL 122

Query: 189 MDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
           + ++ G  +HS       E  +FV  ALV  Y K G +  A+RLF  M  RD V+WN MI
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           +  +  GL  +A QL ++MQEEG+             C  +    GVL  +   +     
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGI-------------CPNSSTIVGVLPTVGEAK----- 224

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
                            AL  GK +HG  VR  +     V   L+ MY++C+ L +A  +
Sbjct: 225 -----------------ALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVAN 426
           F +   ++ ++W++M+ GY   DC +E+  LF +M  +  ++P  VT+ S+L  CA++ +
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L  G++ HCYI++     + +LL N+L+ MYA+ G + +A   FD M+ +D V+++++++
Sbjct: 328 LSRGRKLHCYIIKLGSVLD-ILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVS 386

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           G    G   VAL +F  M  + I PD  TM+ VL ACSH   +  G      +  + G  
Sbjct: 387 GCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI-VRGFA 445

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
                   ++D+Y + G ++ A+E+  +M      +  A ++G
Sbjct: 446 TDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIG 488



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 2/238 (0%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112
           + +A E F ++ I   + D    +   ++  C K+  L++G++LH   I LG   + +L 
Sbjct: 292 MKEALELFDQM-ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLG 350

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
             L++ YA   + ++A    +  N +  + ++ ++S  V++G  A AL +++ MQ   I 
Sbjct: 351 NTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGID 410

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
            D  T   VL AC  +  +  G   H   I         + NAL+ MY K G++  AR +
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 470

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           F++M   D VSWN MI  Y   GL  EA  LF ++   G++ + IT+  +   C  +G
Sbjct: 471 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 528



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            R  V+ NY+    +L  C +  +L   K+ H + L+     +  +L + L  +Y    +
Sbjct: 3   LRFEVKNNYL---HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVL-HKLTRLYLSCNQ 58

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           V  A+ +FD +     + +  +I  Y   G    A+ L+  M    ++P+  T   VL A
Sbjct: 59  VVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA 118

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CS   L +E   +      ++G+   +     +VD Y + G+L +A+ + + M +    A
Sbjct: 119 CS-GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA 177

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
            W  ++  C ++   G+ + A + +++ + E
Sbjct: 178 -WNAMIAGCSLY---GLCDDAVQLIMQMQEE 204



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 84/204 (41%), Gaps = 9/204 (4%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           GN + A   F  ++++    D  L +   ++  C  + AL  G   H   I  G   + +
Sbjct: 392 GNAAVALSIFRMMQLSGIDPD--LTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTL 449

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  Y+     + A  +    +    + WN +I  Y   G   EAL ++  + +  
Sbjct: 450 ICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALG 509

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN----ALVSMYGKFGQVD 226
           ++ D+ T+  +L +C     V  GR+    +    ++S+         +V + G+ G +D
Sbjct: 510 LKPDDITFICLLSSCSHSGLVMEGRLWFDAMS--RDFSIVPRMEHCICMVDILGRAGLID 567

Query: 227 VARRLFDKM-LERDAVSWNTMISA 249
            A      M  E D   W+ ++SA
Sbjct: 568 EAHHFIRNMPFEPDVRIWSALLSA 591


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 208/634 (32%), Positives = 330/634 (52%), Gaps = 44/634 (6%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           +++ YA     +++C   +    R  + W  +I  Y   G Y +A+ +  +M    I   
Sbjct: 86  VLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPS 145

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFD 233
            FT  +VL +      ++ G+ VHS I       ++ V N+L++MY K G   +A+ +FD
Sbjct: 146 QFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFD 205

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           +M+ +D  SWN MI+ +   G    A   F +M E     +++TWN++  G  + G    
Sbjct: 206 RMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAER----DIVTWNSMISGYNQRGYDLR 261

Query: 294 VLELLSRM-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
            L++ S+M R      D       L AC+++  L +G++IH   V   +     V NALI
Sbjct: 262 ALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALI 321

Query: 353 TMYSRC---------------KDLR--------HAYI----------LFKMTAEKSIITW 379
           +MYSRC               KDL+          YI          +F    ++ ++ W
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAW 381

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
            +M+ GY       E+  LFR M      PN  T+A++L + + +A+L HGK+ H   ++
Sbjct: 382 TAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVK 441

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVAL 498
                  + + N+L+ MYA++G +  A   FDL+   RD V++TS+I      G    AL
Sbjct: 442 SGEIYS-VSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LFE M    ++PDH+T V V SAC+H+GLV +G++ F+ M  +  I P L H+ACMVDL
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL 560

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
           +GRAGLL +A+E I KMP  P    W +LL AC++++N  +G+ AAE+LL   PENSG Y
Sbjct: 561 FGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAY 620

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
             +AN+Y+A G W++ AK+R  M+D  V+K  G +W++  +    F V+D  + Q  EIY
Sbjct: 621 SALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIY 680

Query: 679 PLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
             +  + + +K  GYV          EEE+ E+I
Sbjct: 681 ITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQI 714



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 210/483 (43%), Gaps = 83/483 (17%)

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
           +S+++ N L+++Y K G    AR+LFD+M  R A SWNT++SAYA +G    + + F  +
Sbjct: 47  FSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRL 106

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
            +     + ++W T+  G    G +   + ++  M  +            L + +    L
Sbjct: 107 PQR----DSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCL 162

Query: 327 KLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYIL------------------ 367
           + GK++H   V+ G  G   +V N+L+ MY++C D   A ++                  
Sbjct: 163 ETGKKVHSFIVKLGLRGNV-SVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIAL 221

Query: 368 -------------FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVT 413
                        F+  AE+ I+TWNSM+SGY        +  +F +M R S + P+  T
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFT 281

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP--------- 464
           +AS+L  CA +  L  G++ H +I+    F+   ++ N+L+ MY+R G V          
Sbjct: 282 LASVLSACANLEKLCIGEQIHSHIVTTG-FDISGIVLNALISMYSRCGGVETARRLIEQR 340

Query: 465 ------------------------EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
                                   EAK++FD +  RD V +T++I GY   G    A+ L
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINL 400

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F  M   + +P+  T+ A+LS  S    +  G KQ        G    +     ++ +Y 
Sbjct: 401 FRSMVGEEQRPNSYTLAAMLSVASSLASLGHG-KQIHGSAVKSGEIYSVSVSNALITMYA 459

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET------RPEN 614
           +AG +  A      +     +  W +++ A   H   G  E A E L ET      RP++
Sbjct: 460 KAGSITSASRAFDLIRCERDTVSWTSMIIALAQH---GHAEEALE-LFETMLMEGLRPDH 515

Query: 615 SGY 617
             Y
Sbjct: 516 ITY 518



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 196/449 (43%), Gaps = 41/449 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +  +++      + L  GK++H+  + LGL  N  +   L+  YA       A  + +  
Sbjct: 148 TLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRM 207

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI------------RG---------- 173
            ++    WN +I+L+++ G    A+  ++QM  R I            RG          
Sbjct: 208 VVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFS 267

Query: 174 ----------DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
                     D FT  SVL AC  +  +  G  +HS  +    + S  V NAL+SMY + 
Sbjct: 268 KMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRC 327

Query: 223 GQVDVARRLFDKMLERDAV--SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           G V+ ARRL ++   +D     +  ++  Y   G   EA  +F  +++     +V+ W  
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDR----DVVAWTA 383

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +  G  + G +   + L   M  +E   +S      L   S + +L  GK+IHGSAV+  
Sbjct: 384 MIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSG 443

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMT-AEKSIITWNSMLSGYTHLDCAEESAFLF 399
                +V NALITMY++   +  A   F +   E+  ++W SM+        AEE+  LF
Sbjct: 444 EIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELF 503

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
             M   G+ P+++T   +   C     +  G+++   +         L  +  +V+++ R
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGR 563

Query: 460 SGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
           +G + EA+   + M    D VT+ SL++ 
Sbjct: 564 AGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 188/632 (29%), Positives = 328/632 (51%), Gaps = 40/632 (6%)

Query: 52  NLSKAFEAFTRIRITAASH-DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           N ++A   F+++ +    H D  + S A  +  CG   +++ G+ LH  ++      +  
Sbjct: 47  NTTEALSLFSKMWVEPGLHMDPFILSLA--LKACGLNMSVSFGESLHGYSVKTDFVNSVF 104

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   LV  Y      +  C + +   +R  + W  +I+  VR G+  EAL  +  M  ++
Sbjct: 105 VGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQK 164

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +  D +T+ S LKAC +   +++GR +H   +        FV N L +MY K G++D   
Sbjct: 165 VGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGL 224

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           RLF+ M +RD                                   V++W TI    ++ G
Sbjct: 225 RLFESMTQRD-----------------------------------VVSWTTIIMSNVQIG 249

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
             +  ++   RMR  +   +       +  C+ +G ++ G+++H   +R    +  +V N
Sbjct: 250 QEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVAN 309

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           +++ MYS+C  L  A  +F+  + + II+W++M+SGY    C EE+      M R G  P
Sbjct: 310 SIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRP 369

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N    AS+L +C  +A L+ GK+ H ++L   +  ++ ++ ++L+ MY++ G + EA  +
Sbjct: 370 NEFAFASVLSVCGNMAILEQGKQLHAHVLCVGL-EQNTMVQSALINMYSKCGSIKEASKI 428

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           FD     + V++T++I GY   G  + A+ LF+++ K  ++PD VT +AVL+ACSH+GLV
Sbjct: 429 FDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLV 488

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
             G   F  ++ ++ I P  +H+ CM+DL  RAG LN A+ +I  MP+     +W+TLL 
Sbjct: 489 DLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLR 548

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC+IH +   G+ AAEK+L+  P  +  ++ +ANMYAA G W + A+VR  M+  GV K 
Sbjct: 549 ACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKE 608

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           PG +W+   +  S F+  D S+ + + IY +L
Sbjct: 609 PGWSWIKFKDRVSAFVSGDRSHPEGEYIYDVL 640



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 220/471 (46%), Gaps = 40/471 (8%)

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKA 184
           NNA  L +    R  + W  +IS YV      EAL ++ +M     +  D F     LKA
Sbjct: 18  NNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKA 77

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           CG  M V FG  +H   +      S+FV +ALV MY K G+VD    +F +M  R+ VSW
Sbjct: 78  CGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSW 137

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
             +I+     G  KEA   F +M  + V            GC                  
Sbjct: 138 TAIIAGLVRAGYNKEALAYFSDMWIQKV------------GC------------------ 167

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
            +TY  S A    L AC+  GAL  G+EIH   ++  +     V N L TMY++C  L +
Sbjct: 168 -DTYTFSSA----LKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDY 222

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
              LF+   ++ +++W +++     +   E +   FR M  + V PN  T A+++  CA 
Sbjct: 223 GLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCAT 282

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           +  ++ G++ H +++RR + +  L + NS++ MY++  ++  A +VF  +SRRD +++++
Sbjct: 283 LGRIEWGEQLHAHVIRRGLVDS-LSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWST 341

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +I+GY   G G  A      M +   +P+     +VLS C +  ++ +G KQ        
Sbjct: 342 MISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQG-KQLHAHVLCV 400

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           G+       + ++++Y + G + +A +I  +  Y    + W  ++     H
Sbjct: 401 GLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVS-WTAMINGYAEH 450



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 178/394 (45%), Gaps = 42/394 (10%)

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ-EEGVEVNVITWN 279
           K G ++ AR+LFDKML+RD +SW T+IS Y +     EA  LF +M  E G+        
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL-------- 64

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
                                      ++D     + L AC    ++  G+ +HG +V+ 
Sbjct: 65  ---------------------------HMDPFILSLALKACGLNMSVSFGESLHGYSVKT 97

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +     V +AL+ MY +   +    I+FK    +++++W ++++G       +E+   F
Sbjct: 98  DFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYF 157

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M+   V  +  T +S L  CA    L +G+E HC  L++  F     + N+L  MY +
Sbjct: 158 SDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKG-FTAVSFVANTLATMYNK 216

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            GK+     +F+ M++RD V++T++I      G+   A+K F  M +  + P+  T  AV
Sbjct: 217 CGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAV 276

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           +S C+  G +  G+ Q        G+   L     ++ +Y +   L+ A  +   +    
Sbjct: 277 ISGCATLGRIEWGE-QLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRD 335

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
             + W+T++     +   G GE A + L   R E
Sbjct: 336 IIS-WSTMISG---YAQGGCGEEAFDYLSWMRRE 365



 Score = 42.4 bits (98), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N +++   ++G +  A+ +FD M +RDE+++T++I+GY        AL LF +M    ++
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKM---WVE 61

Query: 511 P----DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF------ACMVDLYG 560
           P    D   +   L AC  +  V  G+       S++G   + +        + +VD+Y 
Sbjct: 62  PGLHMDPFILSLALKACGLNMSVSFGE-------SLHGYSVKTDFVNSVFVGSALVDMYM 114

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           + G +++   +  +MP     +  A + G
Sbjct: 115 KIGKVDEGCIVFKEMPLRNVVSWTAIIAG 143


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 220/652 (33%), Positives = 348/652 (53%), Gaps = 39/652 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +   G+ + A   F  +R + +  + V  ++  I+  C        G Q+H   I  
Sbjct: 218 LHGYVKSGDFNNAMGTFCGMRTSYSMVNSV--TYTCILSICATRGKFCLGTQVHGLVIGS 275

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G E +P +   LV  Y+      +A  L         + WN LI+ YV++GF  EA  ++
Sbjct: 276 GFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLF 335

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
             M S  ++ D+ T+ S L +  E   +   + VHS I      + +++ +AL+ +Y K 
Sbjct: 336 NAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKG 395

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G V++AR++F +    D      MIS Y   GL  +A   F  + +EG+  N +T  ++ 
Sbjct: 396 GDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVL 455

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                               AC+ + ALKLGKE+H   ++    
Sbjct: 456 P-----------------------------------ACAALAALKLGKELHCDILKKQLE 480

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
              NV +A+  MY++C  L  AY  F+  +E   I WNSM+S ++     E +  LFR+M
Sbjct: 481 NIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQM 540

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             SG + + V+++S L   A +  L +GKE H Y++R A F+    + ++L++MY++ GK
Sbjct: 541 GMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNA-FSSDTFVASALIDMYSKCGK 599

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A+ VF+LM+ ++EV++ S+IA YG  G  R  L LF EM +  + PDHVT + ++SA
Sbjct: 600 LALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISA 659

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C H+GLV EG   F  MT  YGI  ++EH+ACMVDLYGRAG L++A + I  MP+TP + 
Sbjct: 660 CGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAG 719

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W TLLGAC++H N  + + A+  LLE  P+NSGYYVL++N++A  G W  + KVR  M+
Sbjct: 720 VWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMK 779

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           + GV+KIPG +W+D       F   + ++ ++ EIY +L  L   ++  GYV
Sbjct: 780 EKGVQKIPGYSWIDVNGGTHMFSAAEGNHPESVEIYLILNSLLLELRKQGYV 831



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 143/535 (26%), Positives = 243/535 (45%), Gaps = 63/535 (11%)

Query: 69  SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY---ASFSLY 125
           + D +      +   C     + Q +Q+H   I  G+     L  +++  Y      S  
Sbjct: 39  TQDYLTTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDG 98

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
            N  F +E  N    LPWN +I      G++  AL  Y +M    +  D +T+P V+KAC
Sbjct: 99  GNLFFGLELCN---ALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 155

Query: 186 GEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
           G + +V    VVH+   +      LFV +AL+ +Y   G +  ARR+FD++ +R      
Sbjct: 156 GGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQR------ 209

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
                                        + I WN +  G +++G+F   +     MRT 
Sbjct: 210 -----------------------------DTILWNVMLHGYVKSGDFNNAMGTFCGMRTS 240

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
            + ++SV     L  C+  G   LG ++HG  +   +     V N L+ MYS+C +L  A
Sbjct: 241 YSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDA 300

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             LF    +   +TWN +++GY      +E+A LF  M  +GV+P+ VT AS LP     
Sbjct: 301 RKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILES 360

Query: 425 ANLQHGKEFHCYILR-RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
            +L+H KE H YI+R R  F+  + L ++L+++Y + G V  A+ +F   +  D    T+
Sbjct: 361 GSLRHCKEVHSYIVRHRVPFD--VYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTA 418

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG--------QKQ 535
           +I+GY + G    A+  F  + +  + P+ +TM +VL AC+    +  G        +KQ
Sbjct: 419 MISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQ 478

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            E + ++          + + D+Y + G L+ A E   +M  T  S  W +++ +
Sbjct: 479 LENIVNV---------GSAITDMYAKCGRLDLAYEFFRRMSET-DSICWNSMISS 523



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 132/296 (44%), Gaps = 7/296 (2%)

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            ++S+  TQ+     + ++    ACS    ++  +++H   + G   +   + + ++ +Y
Sbjct: 32  NVMSKPETQDYLTTQLESL--FRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLY 89

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
             C  +     LF      + + WN M+ G   L   + +   + +M  S V P+  T  
Sbjct: 90  VLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFP 149

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
            ++  C  + N+      H    R   F+  L + ++L+++YA +G + +A+ VFD + +
Sbjct: 150 YVIKACGGLNNVPLCMVVH-NTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQ 208

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG-QK 534
           RD + +  ++ GY   G+   A+  F  M  +    + VT   +LS C+  G    G Q 
Sbjct: 209 RDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQV 268

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
               + S +   PQ+ +   +V +Y + G L  A+++   MP T T   W  L+  
Sbjct: 269 HGLVIGSGFEFDPQVAN--TLVAMYSKCGNLFDARKLFNTMPQTDT-VTWNGLIAG 321


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 321/602 (53%), Gaps = 49/602 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLIS 148
           Q+HA  +  GL  N      +    AS+   NN   ++   N+   +P      WN +I 
Sbjct: 3   QIHALILTTGLFFNDA--NSIAQLIASYGRINN---IIPARNVFEKMPQRSINAWNSMII 57

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV-HSCIDACHEW 207
            Y R  +  E L +Y +M S  I+ D+ T+   LKAC  +MD+D G ++ +  +D  + +
Sbjct: 58  AYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGF 117

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            +FV ++++++Y K G++D A+ +FDKM++RD                            
Sbjct: 118 DVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRD---------------------------- 149

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                  V++W T+  G  ++G     +++   M+ + T  D V  V  + AC+ +G  K
Sbjct: 150 -------VVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSK 202

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G  +HG  VR        ++ +LI MY++   L  A  +F+    KS+I+W +++SG+ 
Sbjct: 203 FGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFA 262

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
               A ++     EM  SG +P+ V++ S L  CA+V NL+ GK  H +I++R   ++  
Sbjct: 263 QNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDK-- 320

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
           +   +L++MYA+ G +  A+++FD +  RD + + ++I+ YGI G+G  AL LF +M + 
Sbjct: 321 VSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKET 380

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            I PDH T  ++LSACSHSGLV EGQ  F  +     I P  +H+ACMVDL  RAG + +
Sbjct: 381 NITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEE 440

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A ++I  M   P  A+W  LL  C  H+N  IGE  A+K+LE+ P++ G YVL++N ++ 
Sbjct: 441 AYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSNFFSM 500

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
              WD  A  R  M++ G+RK+PG + V+       FL++D ++ Q Q+I  +L  L   
Sbjct: 501 AKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQAFLMEDKNHNQYQDILQILDILDNE 560

Query: 688 MK 689
           M+
Sbjct: 561 MR 562



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/498 (22%), Positives = 209/498 (41%), Gaps = 77/498 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C  +  L  G+ +   A+  G   +  +V  ++  YA     + A  + +  
Sbjct: 86  TFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKM 145

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +I+ + + G   +A+ +Y+ MQ  R  GD      +++AC  + D  FG 
Sbjct: 146 VKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGL 205

Query: 196 VVHSCIDACHEWSL--FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            VH  +    E ++   +  +L+ MY K G++++A R+F+ +  +  +SW  +IS +A  
Sbjct: 206 SVHGHM-VRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQN 264

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G   +     VEMQ  G + ++++  +    C + GN                       
Sbjct: 265 GFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGN----------------------- 301

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                       LK+GK +HG  V+  Y +  +   ALI MY++C  L  A  LF     
Sbjct: 302 ------------LKVGKSLHGHIVKRLYLDKVS-GTALIDMYAKCGALTFARALFDQIEP 348

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + +I WN+M+S Y       E+  LF +M  + + P++ T AS+L  C+    ++ G+ +
Sbjct: 349 RDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYW 408

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
              ++ ++        +  +V++ +R+G+V E                            
Sbjct: 409 FHVLIDKSKIQPSEKHYACMVDLLSRAGQVEE---------------------------- 440

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSAC-SHSGLVVE---GQKQFERMTSIYGIFPQL 549
              A +L E M    IKP     VA+LS C +H  L++     +K  E      GI+  +
Sbjct: 441 ---AYQLIESM---HIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLV 494

Query: 550 EHFACMVDLYGRAGLLNK 567
            +F  M   +  A +  K
Sbjct: 495 SNFFSMAKKWDDAAVFRK 512



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 2/243 (0%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G    A + +  ++      D V+     +I  C  +     G  +H   +   + 
Sbjct: 160 FAQSGRPLDAIDIYRTMQKERTEGDGVV--MVGLIQACTSLGDSKFGLSVHGHMVRREMN 217

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + VL   L+  YA       A  + E    +  + W  LIS + ++GF  + L    +M
Sbjct: 218 MDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEM 277

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
           Q+   + D  +  S L AC ++ ++  G+ +H  I            AL+ MY K G + 
Sbjct: 278 QNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVSGTALIDMYAKCGALT 337

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            AR LFD++  RD + WN MIS+Y   G   EA  LF++M+E  +  +  T+ ++   C 
Sbjct: 338 FARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACS 397

Query: 287 RTG 289
            +G
Sbjct: 398 HSG 400


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 191/551 (34%), Positives = 295/551 (53%), Gaps = 41/551 (7%)

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           PWN  +    +   + +AL +Y QM     R + FT+P  LK+C  +     G   H  I
Sbjct: 16  PWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 202 D--ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE--RDAVSWNTMISAYASKGLWK 257
               C  +  FV   L+SMY K   VD AR++F++     +  V +N ++S Y S     
Sbjct: 76  TKVGC-VFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 134

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           EA  LF +M EEGV VN +T   +   C+   N                           
Sbjct: 135 EAVLLFRQMNEEGVPVNSVTLLGLIPACVSPIN--------------------------- 167

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
                   L+LG  +H S ++  +    +V N  ITMY +C  + +A  LF     K +I
Sbjct: 168 --------LELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLI 219

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +WN+M+SGY     A     L+R M  +GV P+ VT+  +L  CA +     G E   + 
Sbjct: 220 SWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVE-FK 278

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           ++ + F  +  L N+L+ MYAR G + +A++VFD M  R  V++T++I GYG+ G G +A
Sbjct: 279 IQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIA 338

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           ++LF+EM ++ I+PD    V VLSACSH+GL  +G + F+ M   Y + P  EH++CMVD
Sbjct: 339 VQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVD 398

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L GRAG L +A+ +I  MP  P  A+W  LLGAC+IH+N  + E A E+++E  PEN GY
Sbjct: 399 LLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGY 458

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           YVL++N+Y+       + ++R  M++  ++K PGC++V+      PF+V D +++Q+ EI
Sbjct: 459 YVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEI 518

Query: 678 YPLLGGLTELM 688
           Y +L  L  ++
Sbjct: 519 YRVLEELEAII 529



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 206/450 (45%), Gaps = 41/450 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C  +     G Q H     +G    P +   L++ Y   SL +NA  + E +
Sbjct: 51  TFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEEN 110

Query: 136 --NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             + +  + +N L+S YV +   +EA+ +++QM    +  ++ T   ++ AC   ++++ 
Sbjct: 111 FHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLEL 170

Query: 194 GRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H S +    +  + V N  ++MY K G V+ A++LFD+M  +  +SWN M+S YA 
Sbjct: 171 GSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQ 230

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            GL     +L+  M   GV                                   + D V 
Sbjct: 231 NGLATNVLELYRNMDMNGV-----------------------------------HPDPVT 255

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            V  L +C+++GA  +G E+        +     + NALI MY+RC +L  A  +F    
Sbjct: 256 LVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP 315

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           E+++++W +++ GY      E +  LF+EM RSG+EP+      +L  C+       G E
Sbjct: 316 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE 375

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQ 491
           +   + R          ++ +V++  R+G++ EA+++ + M  + D   + +L+    I 
Sbjct: 376 YFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH 435

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
               +A   FE +   +++P+++    +LS
Sbjct: 436 KNVELAELAFERV--IELEPENIGYYVLLS 463


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 221/646 (34%), Positives = 324/646 (50%), Gaps = 61/646 (9%)

Query: 107 KNPVLVPKLVTFYASFSLYNNA-----CFLVENSNIRYPLPWNLLISLYVR--DGFYAEA 159
           + P +V +  T  A+ S   N+      F      IR  + +N +I+ Y    DGF   A
Sbjct: 77  RQPDIVAR-TTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGF--GA 133

Query: 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMM-DVDFGRVVH-SCIDACHEWSLFVHNALVS 217
           + +++ +     R DNFT+ SVL A   ++ D    + +H + + +   +   V NAL+S
Sbjct: 134 IELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLS 193

Query: 218 MYGKFGQ---------VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           ++ K            +  AR+LFD+M ERD +SW TMI+ Y   G    A Q    M E
Sbjct: 194 VFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTE 253

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           +     V+ WN +  G +  G F   LE+  +M       D       L AC++ G    
Sbjct: 254 K----LVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLH 309

Query: 329 GKEIHG----SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           GK++H     +  R       +V NAL T+Y +C  +  A  +F     K +++WN++LS
Sbjct: 310 GKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILS 369

Query: 385 GYTH---LDCA----------------------------EESAFLFREMFRSGVEPNYVT 413
           GY +   +D A                            EES  LF  M   G EP    
Sbjct: 370 GYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYA 429

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
            A  +  CA +A L HG++ H  ++R   F+  L   N+L+ MYA+ G V  A  +F  M
Sbjct: 430 FAGAIIACAWLAALMHGRQLHAQLVRLG-FDSSLSAGNALITMYAKCGVVEAAHCLFLTM 488

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
              D V++ ++IA  G  G G  AL+LFE M K  I PD +T + VLS CSH+GLV EG 
Sbjct: 489 PYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGH 548

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           + F+ M+ +YGI P  +H+A M+DL  RAG  ++AK++I  MP  P   +W  LL  C+I
Sbjct: 549 RYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRI 608

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           H N  +G  AAE+L E  P++ G YVL++NMYA  G WD +AKVR  MRD GV+K PGC+
Sbjct: 609 HGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCS 668

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           W++  N    FLVDD  + + Q +Y  L  L   M+  GY+   +F
Sbjct: 669 WIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKF 714



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 206/495 (41%), Gaps = 82/495 (16%)

Query: 178 YPSVLKAC--GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
           Y + L+ C     M     R VH+  I +  +   ++ N L+ +Y K   +  A  LFD+
Sbjct: 16  YAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDE 75

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           + + D V+  T+I+A++S G    A ++F      G+  + + +N +  G     +  G 
Sbjct: 76  IRQPDIVARTTLIAAHSSAGNSNLAREIFFA-TPLGIR-DTVCYNAMITGYSHNNDGFGA 133

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSH-VGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
           +EL   +       D+      LGA +  V   K  ++IH + V+   G   +V NAL++
Sbjct: 134 IELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLS 193

Query: 354 MYSRCK----------------------------------------DLRHAYILFKMTAE 373
           ++ +C                                         +L  A        E
Sbjct: 194 VFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTE 253

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K ++ WN+M+SGY H     E+  +FR+M+  G++ +  T  S+L  CA      HGK+ 
Sbjct: 254 KLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQV 313

Query: 434 HCYILR------------------------------RAMFNE----HLLLWNSLVEMYAR 459
           H YILR                              R +FN+     L+ WN+++  Y  
Sbjct: 314 HAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVN 373

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
           +G++ EAKS F+ M  R+ +T+T +I+G    G G  +LKLF  M     +P        
Sbjct: 374 AGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGA 433

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           + AC+    ++ G++   ++  + G    L     ++ +Y + G++  A  +   MPY  
Sbjct: 434 IIACAWLAALMHGRQLHAQLVRL-GFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYL- 491

Query: 580 TSAMWATLLGACQIH 594
            S  W  ++ A   H
Sbjct: 492 DSVSWNAMIAALGQH 506



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 20/224 (8%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           V ++ A + + CGKV    + +Q+           N + V  LV++ A  S Y NA  + 
Sbjct: 332 VNNALATLYWKCGKVD---EARQVF----------NQMPVKDLVSWNAILSGYVNAGRID 378

Query: 133 ENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
           E  +    +P      W ++IS   ++GF  E+L ++ +M+S      ++ +   + AC 
Sbjct: 379 EAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACA 438

Query: 187 EMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
            +  +  GR +H+  +    + SL   NAL++MY K G V+ A  LF  M   D+VSWN 
Sbjct: 439 WLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNA 498

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           MI+A    G   +A +LF  M +E +  + IT+ T+   C   G
Sbjct: 499 MIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAG 542


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 307/547 (56%), Gaps = 45/547 (8%)

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC--HEWSLFVHNALV 216
           A+     M+   +  D  TY  ++K C     V  G+ VH  I  C  +E  +FV N L+
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHI-FCKGYEPKMFVVNTLL 97

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
           +MY KF  ++ A  LFD+M ER+ VSW TMISAY++K L  +A +  + M  EGV  N+ 
Sbjct: 98  NMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNK-LNDKALKCLILMFREGVRPNMF 156

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           T++++   C    N + +                           H G +K G E   S 
Sbjct: 157 TYSSVLRACDGLPNLRQL---------------------------HCGIIKTGLE---SD 186

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           V         VR+ALI +YS+  DL +A  +F     + ++ WNS++ G+       E+ 
Sbjct: 187 VF--------VRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEAL 238

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF+ M R+G   +  T+ S+L  C  +A L+ G++ H ++L+   F++ L+L N+L++M
Sbjct: 239 NLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK---FDQDLILNNALIDM 295

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y + G + +A S F  M  +D +++++++AG    G  R AL+LFE M ++  +P+++T+
Sbjct: 296 YCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITV 355

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           + VL ACSH+GLV +G   F  M  ++G+ P  EH+ C++DL GRAG L++A ++I +M 
Sbjct: 356 LGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEME 415

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             P S  W TLLGAC++HRN  +  +AA+K++E  PE++G Y+L++N+YA T  W+ +A+
Sbjct: 416 CEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAE 475

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVK 696
           VR  M + G+RK PGC+W++       F++ DTS+ + +EI   L  L E +   GYV  
Sbjct: 476 VRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPD 535

Query: 697 EEFCSEE 703
             F  ++
Sbjct: 536 TNFVLQD 542



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 219/489 (44%), Gaps = 57/489 (11%)

Query: 40  LLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHAC 99
           L+    +F  + +L +A  A   +       D +  +++ +I CC    A+ +GK++H  
Sbjct: 23  LVNEFANFCHQWDLHRAMRAMDAMERHGVFADAI--TYSELIKCCSARGAVQEGKRVHEH 80

Query: 100 AIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159
               G E    +V  L+  Y  F+L   A  L +    R  + W  +IS Y  +    +A
Sbjct: 81  IFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY-SNKLNDKA 139

Query: 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSM 218
           L     M    +R + FTY SVL+AC  + ++   R +H   I    E  +FV +AL+ +
Sbjct: 140 LKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDV 196

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K+  +D A  +FD+M  RD V WN++I  +A      EA  LF  M+  G   +  T 
Sbjct: 197 YSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATL 256

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
            ++                                   L AC+ +  L+LG+++H   ++
Sbjct: 257 TSV-----------------------------------LRACTGLALLELGRQVHVHVLK 281

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             + +   + NALI MY +C  L  A   F    EK +I+W++M++G      + ++  L
Sbjct: 282 --FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALEL 339

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF-----NEHLLLWNSL 453
           F  M  SG  PNY+T+  +L  C+    ++ G  ++ +   + +F      EH   +  L
Sbjct: 340 FESMKESGSRPNYITVLGVLFACSHAGLVEKG--WYYFRSMKKLFGVDPGREH---YGCL 394

Query: 454 VEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           +++  R+G++ EA K + ++    D VT+ +L+    +     V L ++      +++P+
Sbjct: 395 IDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRN--VDLAIYAAKKIIELEPE 452

Query: 513 HVTMVAVLS 521
                 +LS
Sbjct: 453 DAGTYILLS 461


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 218/649 (33%), Positives = 327/649 (50%), Gaps = 76/649 (11%)

Query: 57  FEAFTRIRITAASHDVVLD--SFAHIIFCCGKV----KALAQGKQLHACAIALGLEKNPV 110
           F  F   +++++   + LD  S    +F  G+V      +   + +H+  I   L  N  
Sbjct: 16  FRKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSS 75

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L  KL+  YAS     +A  + +    R  +  N++I  YV +GFY E + V+  M    
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +R D++T+P VLKAC     +  GR +H S        +LFV N LVSMYGK G +  AR
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            + D+M  R                                   +V++WN++  G  +  
Sbjct: 196 LVLDEMSRR-----------------------------------DVVSWNSLVVGYAQNQ 220

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
            F   LE+   M + +   D+      L A S+                      ENV  
Sbjct: 221 RFDDALEVCREMESVKISHDAGTMASLLPAVSNTTT-------------------ENV-- 259

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
               MY   KD+      FKM  +KS+++WN M+  Y       E+  L+  M   G EP
Sbjct: 260 ----MY--VKDM-----FFKM-GKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEP 307

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + V+I S+LP C   + L  GK+ H YI R+ +   +LLL N+L++MYA+ G + +A+ V
Sbjct: 308 DAVSITSVLPACGDTSALSLGKKIHGYIERKKLI-PNLLLENALIDMYAKCGCLEKARDV 366

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+ M  RD V++T++I+ YG  G G  A+ LF ++  + + PD +  V  L+ACSH+GL+
Sbjct: 367 FENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLL 426

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG+  F+ MT  Y I P+LEH ACMVDL GRAG + +A   I  M   P   +W  LLG
Sbjct: 427 EEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLG 486

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++H +T IG  AA+KL +  PE SGYYVL++N+YA  G W+++  +R  M+  G++K 
Sbjct: 487 ACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN 546

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
           PG + V+   +   FLV D S+ Q+ EIY  L  L + MK+ GYV   E
Sbjct: 547 PGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSE 595



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A E ++R+       D V  S   ++  CG   AL+ GK++H       L  N +L   
Sbjct: 292 EAVELYSRMEADGFEPDAV--SITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 349

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  YA       A  + EN   R  + W  +IS Y   G   +A+ ++ ++Q   +  D
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPD 409

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLF 232
           +  + + L AC     ++ GR     +   ++ +  + +   +V + G+ G+V  A R  
Sbjct: 410 SIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFI 469

Query: 233 DKM-LERDAVSWNTMISA 249
             M +E +   W  ++ A
Sbjct: 470 QDMSMEPNERVWGALLGA 487


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 206/622 (33%), Positives = 334/622 (53%), Gaps = 11/622 (1%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C   + L QGKQLHA  I L +  +  L  KL+ FY+  +  + A  + + +  R    W
Sbjct: 44  CSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKVFDTTPHRNTFTW 103

Query: 144 NLLISLYVRDGFYAEALCVYKQMQ---SRRIRGDNFTYPSVLKA-CGEMMDVDFGRVVHS 199
           N ++  Y  +  +  AL ++       +     DNFT   VLKA        +  + VH 
Sbjct: 104 NAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAKEVHC 163

Query: 200 CIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I     +S +FV NAL++ Y +  +V +AR +FD M ERD V+WN MI  Y+ + L+ E
Sbjct: 164 LILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDE 223

Query: 259 AFQLFVEMQE-EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
             +L++EM     V  NV+T  ++   C ++ +    +EL   ++     +D   +   +
Sbjct: 224 CKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVV 283

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
              +  G L   +E+      G   + E    A+I+ Y     +  A  +F+      + 
Sbjct: 284 AMYAKCGRLDYAREM----FEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLN 339

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            WN+++SG       E    L R+M  SG+ PN VT+ASILP  +  +NL+ GKE H Y 
Sbjct: 340 MWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYA 399

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           +RR  + +++ +  S+++ Y + G +  A+ VFDL   R  + +TS+I+ Y   G+  +A
Sbjct: 400 IRRG-YEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLA 458

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L L+ +M    I+PD VT+ +VL+AC+HSGLV E    F  M S YGI P +EH+ACMV 
Sbjct: 459 LGLYAQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVG 518

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           +  RAG L++A + I++MP  P++ +W  LL    +  +  IG++A + L E  PEN+G 
Sbjct: 519 VLSRAGKLSEAVQFISEMPIEPSAKVWGPLLHGASVFGDVEIGKFACDHLFEIEPENTGN 578

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           Y+++AN+YA  G W++  +VR  M+ +G++KI G +W++       F+  D SN ++ EI
Sbjct: 579 YIIMANLYAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETSGGLLSFIAKDVSNGRSDEI 638

Query: 678 YPLLGGLTELMKDAGYVVKEEF 699
           Y LL GL  LM++ G V++EE 
Sbjct: 639 YALLEGLLGLMREEGCVLQEEL 660


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 196/624 (31%), Positives = 312/624 (50%), Gaps = 48/624 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           FA +I     +     G+ +HAC    G E + ++    VT Y       N     +   
Sbjct: 93  FASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMM 152

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           I      N L+S +       +   +  Q+       + +T+ S+LK C    D++ G+ 
Sbjct: 153 IENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKA 212

Query: 197 VHSCI------DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           +H  +         H W     N+LV++Y K G  + A ++F ++ ERD VSW  +I+ +
Sbjct: 213 IHGQVIKSGINPDSHLW-----NSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF 267

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
            ++G +    ++F +M  EG   N+ T+ +I                             
Sbjct: 268 VAEG-YGSGLRIFNQMLAEGFNPNMYTFISI----------------------------- 297

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 L +CS +  + LGK++H   V+      + V  AL+ MY++ + L  A  +F  
Sbjct: 298 ------LRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 351

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             ++ +  W  +++GY      E++   F +M R GV+PN  T+AS L  C+R+A L  G
Sbjct: 352 LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG 411

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           ++ H   ++     + + + ++LV+MYA+ G V +A+ VFD +  RD V++ ++I GY  
Sbjct: 412 RQLHSMAIKAGQSGD-MFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQ 470

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G+G  ALK FE M      PD VT + VLSACSH GL+ EG+K F  ++ IYGI P +E
Sbjct: 471 HGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIE 530

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ACMVD+ GRAG  ++ +  I +M  T    +W T+LGAC++H N   GE AA KL E 
Sbjct: 531 HYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFEL 590

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            PE    Y+L++NM+AA G WD +  VR  M   GV+K PGC+WV+       FL  D S
Sbjct: 591 EPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGS 650

Query: 671 NVQAQEIYPLLGGLTELMKDAGYV 694
           + + +EI+  L  L + +   GY 
Sbjct: 651 HPKIREIHLKLQDLHQKLMSVGYT 674



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/516 (23%), Positives = 236/516 (45%), Gaps = 42/516 (8%)

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           I  G+  +  L   LV  Y        A  ++E   I+    WN  +S         EA+
Sbjct: 16  IKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAV 75

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMY 219
            ++  M+  RIR + F + S++ A   + D  +G  +H+C+     E  + + NA V+MY
Sbjct: 76  QLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMY 135

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K   V+   + F  M+  +  S N ++S +       +  ++ +++  EG E N+ T+ 
Sbjct: 136 MKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFI 195

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           +I                                   L  C+  G L  GK IHG  ++ 
Sbjct: 196 SI-----------------------------------LKTCASKGDLNEGKAIHGQVIKS 220

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                 ++ N+L+ +Y++C    +A  +F    E+ +++W ++++G+   +       +F
Sbjct: 221 GINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFV-AEGYGSGLRIF 279

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M   G  PN  T  SIL  C+ ++++  GK+ H  I++ ++ + +  +  +LV+MYA+
Sbjct: 280 NQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSL-DGNDFVGTALVDMYAK 338

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
           +  + +A+++F+ + +RD   +T ++AGY   G+G  A+K F +M +  +KP+  T+ + 
Sbjct: 339 NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 398

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           LS CS    +  G +Q   M    G    +   + +VD+Y + G +  A E++     + 
Sbjct: 399 LSGCSRIATLDSG-RQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA-EVVFDGLVSR 456

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLE--TRPE 613
            +  W T++     H   G    A E +L+  T P+
Sbjct: 457 DTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPD 492



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 199/443 (44%), Gaps = 45/443 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  I+  C     L +GK +H   I  G+  +  L   LV  YA     N AC +    
Sbjct: 193 TFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEI 252

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  LI+ +V +G Y   L ++ QM +     + +T+ S+L++C  + DVD G+
Sbjct: 253 PERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGK 311

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  +    + + FV  ALV MY K   ++ A  +F+++++RD  +W  +++ YA  G
Sbjct: 312 QVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDG 371

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             ++A + F++MQ EGV+ N  T  +                                  
Sbjct: 372 QGEKAVKCFIQMQREGVKPNEFTLAS---------------------------------- 397

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L  CS +  L  G+++H  A++        V +AL+ MY++C  +  A ++F     +
Sbjct: 398 -SLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSR 456

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             ++WN+++ GY+      ++   F  M   G  P+ VT   +L  C+ +  ++ GK+  
Sbjct: 457 DTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHF 516

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY-----G 489
             + +       +  +  +V++  R+GK  E +S  + M     V     + G       
Sbjct: 517 NSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGN 576

Query: 490 IQGEGRVALKLFE---EMNKNQI 509
           I+   R A+KLFE   E++ N I
Sbjct: 577 IEFGERAAMKLFELEPEIDSNYI 599


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 218/657 (33%), Positives = 345/657 (52%), Gaps = 62/657 (9%)

Query: 53  LSKAFEAF-TRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE--KNP 109
           L +AF+ F T +R+      V   SF ++     ++        L+   + LG +   + 
Sbjct: 199 LIEAFKMFRTMMRMGIRPTPV---SFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDF 255

Query: 110 VLVPKLVTFYASFSLYNNA-----CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
            +V   +  YA     + A     C L  N+ +     WN +I  YV++    EA+ ++ 
Sbjct: 256 FVVSSAIFMYAELGCVDFAREIFDCCLERNTEV-----WNTMIGGYVQNNCPIEAIDLFV 310

Query: 165 Q-MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
           Q M+S +   D+ T+ S L A  ++  +D GR +H+ I  +     + + NA++ MY + 
Sbjct: 311 QVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRC 370

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +  + ++F  MLERD V+WNTM+SA+   GL  E   L  EMQ++G  V+ +T     
Sbjct: 371 GSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVT----- 425

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                      +L L S +R+QE                      +GK+ H   +R  +G
Sbjct: 426 --------LTALLSLASNLRSQE----------------------IGKQAHAYLIR--HG 453

Query: 343 -EYENVRNALITMYSRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLF 399
            ++E +   LI MY++   +  A  LF+  +  ++   TWN+M++GYT    +EE   +F
Sbjct: 454 IQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVF 513

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R+M    V PN VT+ASILP C  +  +  GK+ H + + R   N+++ +  +L++MY++
Sbjct: 514 RKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI-RCFLNQNVFVGTALLDMYSK 572

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
           SG +  A++VF     ++ VTYT++I  YG  G G  AL LF  M  + IKPD VT VA+
Sbjct: 573 SGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAI 632

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYT 578
           LSACS++GLV EG + F+ M   Y I P  EH+ C+ D+ GR G + +A E +  +    
Sbjct: 633 LSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEG 692

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN--SGYYVLIANMYAATGCWDKLAK 636
            T  +W +LLGAC+IH    +G+  A KLLE    +  +GY+VL++N+YAA G WD + +
Sbjct: 693 NTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDR 752

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           VR  MR  G+ K  GC+WV+     + F+  D  + Q  EIY +L  L   MKDAGY
Sbjct: 753 VRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGY 809



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/554 (25%), Positives = 256/554 (46%), Gaps = 75/554 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF--------SLYN- 126
           +F+  +  C + ++L  GK LH   +      + ++   L+  Y++         + Y+ 
Sbjct: 106 TFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDF 165

Query: 127 NACFLV----ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
           N C LV    +    R  + WN +IS YV+     EA  +++ M    IR    ++ +V 
Sbjct: 166 NNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVF 225

Query: 183 KACGEMMDVD-----FGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
            A   M D D     +G VV    D   ++  FV ++ + MY + G VD AR +FD  LE
Sbjct: 226 PAVWRMNDYDNANVLYGLVVKLGSDYVDDF--FVVSSAIFMYAELGCVDFAREIFDCCLE 283

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           R+   WNTMI  Y       EA  LFV++                               
Sbjct: 284 RNTEVWNTMIGGYVQNNCPIEAIDLFVQV------------------------------- 312

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
              M +++  LD V  +  L A S +  L LG+++H   ++        + NA+I MYSR
Sbjct: 313 ---MESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSR 369

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           C  +  ++ +F    E+ ++TWN+M+S +      +E   L  EM + G   + VT+ ++
Sbjct: 370 CGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTAL 429

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-- 475
           L L + + + + GK+ H Y++R  +  E +  +  L++MYA+SG +  A+ +F+  S   
Sbjct: 430 LSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGY--LIDMYAKSGLITTAQQLFEKNSXYD 487

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RDE T+ ++IAGY   G       +F +M +  ++P+ VT+ ++L AC+  G +  G++ 
Sbjct: 488 RDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQ- 546

Query: 536 FERMTSIYGI----FPQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
                 I+G     F     F    ++D+Y ++G +  A+ +  +      S  + T++ 
Sbjct: 547 ------IHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAE-TLEKNSVTYTTMIL 599

Query: 590 ACQIHRNTGIGEWA 603
           +   H   G+GE A
Sbjct: 600 SYGQH---GMGERA 610



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 123/476 (25%), Positives = 213/476 (44%), Gaps = 75/476 (15%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           WN +I  ++ +    +AL  Y +M+ S   + D++T+ S LKAC +   +  G+ +H  +
Sbjct: 71  WNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHV 130

Query: 202 DACH-EWSLFVHNALVSMYG-------------KFGQVDVARRLFDKMLERDAVSWNTMI 247
              H   S  V+N+L++MY               F   D+ RR+FD M +R+ V+WNTMI
Sbjct: 131 LRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMI 190

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           S Y       EAF++F  M   G+    +++  +     R  ++                
Sbjct: 191 SWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDY---------------- 234

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
            D+   + GL        +KLG +         Y +   V ++ I MY+    +  A  +
Sbjct: 235 -DNANVLYGL-------VVKLGSD---------YVDDFFVVSSAIFMYAELGCVDFAREI 277

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVAN 426
           F    E++   WN+M+ GY   +C  E+  LF ++  S     + VT  S L   +++  
Sbjct: 278 FDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQW 337

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L  G++ H YIL+ +   + ++L N+++ MY+R G +  +  VF  M  RD VT+ ++++
Sbjct: 338 LDLGRQLHAYILKSSTILQVVIL-NAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVS 396

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS-----------HSGLVVEGQKQ 535
            +   G     L L  EM K     D VT+ A+LS  S           H+ L+  G  Q
Sbjct: 397 AFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQ 455

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGA 590
           FE M               ++D+Y ++GL+  A+++  K   Y    A W  ++  
Sbjct: 456 FEGMDGY------------LIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAG 499



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 158/385 (41%), Gaps = 55/385 (14%)

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G    A  LFD +     V WNT+I  +    +  +A   +                   
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFY------------------- 91

Query: 283 GGCLRTGNFKGVLELLSRMRTQET-YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                           +RMR   +   DS      L AC+   +LKLGK +H   +R  +
Sbjct: 92  ----------------ARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHF 135

Query: 342 GEYENVRNALITMYSRCKD----LRHAYI---------LFKMTAEKSIITWNSMLSGYTH 388
           G    V N+L+ MYS C      L  AY          +F    +++++ WN+M+S Y  
Sbjct: 136 GSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVK 195

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHL 447
            +   E+  +FR M R G+ P  V+  ++ P   R+ +  +    +  +++    + +  
Sbjct: 196 TERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDF 255

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV-ALKLF-EEMN 505
            + +S + MYA  G V  A+ +FD    R+   + ++I GY +Q    + A+ LF + M 
Sbjct: 256 FVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGY-VQNNCPIEAIDLFVQVME 314

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
             Q   D VT ++ L+A S    +  G++    +     I  Q+     ++ +Y R G +
Sbjct: 315 SEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTIL-QVVILNAIIVMYSRCGSI 373

Query: 566 NKAKEIITKMPYTPTSAMWATLLGA 590
             + ++ + M        W T++ A
Sbjct: 374 GTSFKVFSNM-LERDVVTWNTMVSA 397


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 191/586 (32%), Positives = 317/586 (54%), Gaps = 46/586 (7%)

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
           P L T +  +         V+ +N+     WN +I+   R G   EAL  +  M+   ++
Sbjct: 102 PNLTTLFNKY---------VDKTNV---FSWNSVIAELARSGDSVEALRAFSSMRKLSLK 149

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
            +  T+P  +K+C  ++D+  GR  H   +    E  LFV +ALV MY K G++  AR L
Sbjct: 150 PNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTL 209

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE--MQEEGVEVNVITWNTIAGGCLRTG 289
           FD++  R+ VSW +MI+ Y        A  LF E  ++E G E +               
Sbjct: 210 FDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGD--------------- 254

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                          E  +D +A V  L ACS V    + + +HG  ++  +     V N
Sbjct: 255 --------------GEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVEN 300

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VE 408
            L+  Y++C +L  +  +F   AE+ +I+WNS+++ Y     + ES  +F  M + G + 
Sbjct: 301 TLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEIN 360

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            N VT++++L  CA   + + GK  H  +++  +   ++ +  S+++MY + GKV  A+ 
Sbjct: 361 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGL-ESNVFVGTSIIDMYCKCGKVEMARK 419

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
            FD M  ++  ++++++AGYG+ G  + AL++F EMN   +KP+++T V+VL+ACSH+GL
Sbjct: 420 AFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGL 479

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           + EG   F+ M+  + + P +EH+ CMVDL GRAG L +A ++I  M   P   +W  LL
Sbjct: 480 LEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALL 539

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
           GAC++H+N  +GE +A KL E  P+N GYYVL++N+YA  G W+ + ++R  M++ G+ K
Sbjct: 540 GACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVK 599

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            PG + VD       FLV D  + Q ++IY  L  L+  +++ GYV
Sbjct: 600 PPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYV 645



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 134/502 (26%), Positives = 228/502 (45%), Gaps = 71/502 (14%)

Query: 32  NEHIMRINLLE---TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVK 88
           N+++ + N+      + + A  G+  +A  AF+ +R  +   +    +F   I  C  + 
Sbjct: 109 NKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPN--RSTFPCAIKSCSALL 166

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
            L  G+Q H  A+  G E +  +   LV  Y+      +A  L +  + R  + W  +I+
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 149 LYVRDGFYAEALCVYKQ--MQSRRIRGDN------FTYPSVLKACGEMMDVDFGRVVHS- 199
            YV++     AL ++K+  ++     GD           SVL AC  + +      VH  
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGF 286

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            I    E  L V N L+  Y K G++ V+RR+FD M ERD +SWN++I+ YA  G+  E+
Sbjct: 287 LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346

Query: 260 FQLFVEMQEEG-VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
            ++F  M ++G +  N +T + +                                   L 
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAV-----------------------------------LL 371

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+H G+ +LGK IH   ++        V  ++I MY +C  +  A   F    EK++ +
Sbjct: 372 ACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKS 431

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W++M++GY     A+E+  +F EM  +GV+PNY+T  S+L  C+    L+ G  +H +  
Sbjct: 432 WSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG--WHWFKA 489

Query: 439 RRAMFN-----EHLLLWNSLVEMYARSGKVPEAKSVFDLMS----RRDEVTYTSLIAGYG 489
               F+     EH   +  +V++  R+G + EA   FDL+     R D V + +L+    
Sbjct: 490 MSHEFDVEPGVEH---YGCMVDLLGRAGYLKEA---FDLIKGMKLRPDFVVWGALLGACR 543

Query: 490 IQGE---GRV-ALKLFEEMNKN 507
           +      G + A KLFE   KN
Sbjct: 544 MHKNVDLGEISARKLFELDPKN 565


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 205/658 (31%), Positives = 336/658 (51%), Gaps = 58/658 (8%)

Query: 100 AIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI--RYPLPWNLLISLYVRDGFYA 157
           A+    +  PV    LV+ YA      ++    ++  +  R  +  N +IS + R    A
Sbjct: 80  AVLFRADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAA 139

Query: 158 EALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID---ACHEWS---- 208
            A+ V++ +      +R D++++ S+L A G+M D+     V  C     A H+      
Sbjct: 140 PAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDL----AVSHCTQLHCAVHKLGAGAV 195

Query: 209 LFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           L V NAL+++Y K    G    AR++ D+M E+D ++W T++  +  KG    A   F E
Sbjct: 196 LSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEE 255

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           +  E      + WN +  G +++G      EL  RM ++    D       L AC++ G 
Sbjct: 256 IDGE----FDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGF 311

Query: 326 LKLGKEIHGSAVRGCYGEYEN----VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
              GK +HG  +R            V NAL+T+YS+   +  A  +F     K +++WN+
Sbjct: 312 FLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNT 371

Query: 382 MLSGYTHLDCAEESAFLFREM------------------------------FRS-GVEPN 410
           +LSGY    C + +A +F+EM                               RS  V+P 
Sbjct: 372 ILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPC 431

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             T A  +  C  +  L+HGK+ H ++++   F       N+L+ MYAR G V +A+ VF
Sbjct: 432 DYTYAGAVAACGELGALKHGKQLHAHLVQ-CGFEASNSAGNALLTMYARCGAVKDARLVF 490

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
            +M   D V++ ++I+  G  G GR AL+LF++M    I PD ++ + +L+AC+H+GLV 
Sbjct: 491 LVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVD 550

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +G + FE M   +GI P  +H+A ++DL GRAG + +A+++I  MP+ PT A+W  +L  
Sbjct: 551 DGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSG 610

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           C+I+ +  +G +AA++L +  PE+ G Y+L++N Y+A G W   A+VR  MRD GV+K P
Sbjct: 611 CRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEP 670

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           GC+W++ GN    FLV DT +  A E+Y  L  +   M+  GYV   +F  ++    E
Sbjct: 671 GCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHE 728



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 121/279 (43%), Gaps = 46/279 (16%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G  ++AFE F R+       D    +F  ++  C        GK +H   I L     P 
Sbjct: 275 GMCAEAFELFRRMVSKRIPPDEF--TFTSLLSACANAGFFLHGKSVHGQFIRL----QPD 328

Query: 111 LVPK--------LVTFYASFSLYNNACFLVENSNIRYPLPWNLL---------------- 146
            VP+        LVT Y+       A  + ++  ++  + WN +                
Sbjct: 329 FVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARI 388

Query: 147 ---------------ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
                          +S YV  G   +AL ++ QM+S  ++  ++TY   + ACGE+  +
Sbjct: 389 FKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGAL 448

Query: 192 DFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ +H+ +  C  E S    NAL++MY + G V  AR +F  M   D+VSWN MISA 
Sbjct: 449 KHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISAL 508

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
              G  +EA +LF +M  +G+  + I++ TI   C   G
Sbjct: 509 GQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAG 547



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 40/209 (19%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--CFLVE 133
           ++A  +  CG++ AL  GKQLHA  +  G E +      L+T YA      +A   FLV 
Sbjct: 434 TYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLV- 492

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG------- 186
             N+   + WN +IS   + G   EAL ++ QM ++ I  D  ++ ++L AC        
Sbjct: 493 MPNVD-SVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDD 551

Query: 187 -----EMMDVDFGRVVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKM-LERD 239
                E M+ DFG      I    +     H A L+ + G+ G++  AR L   M  E  
Sbjct: 552 GFQYFESMERDFG------ISPGED-----HYARLIDLLGRAGRIGEARDLIKTMPFEPT 600

Query: 240 AVSWNTMIS-----------AYASKGLWK 257
              W  ++S           AYA+  L+K
Sbjct: 601 PAIWEAILSGCRINGDMELGAYAADQLFK 629


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 201/682 (29%), Positives = 344/682 (50%), Gaps = 70/682 (10%)

Query: 51   GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
            G+ + A   F R++ +    +    +   I+     +  + +G++LH   +   L  + +
Sbjct: 356  GHFNDALVLFLRMQESGYKSNRF--NLGSILMASAGLADIGKGRELHGHLVRNLLNSDII 413

Query: 111  LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
            L   LV  Y+   +   A  +  +   R  + +N L++ YV++G   EAL +Y  MQS  
Sbjct: 414  LGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSED 473

Query: 171  -IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
             I+ D FT+ ++L  C    + + GR +H+  I A    ++ V   LV MY + G+++ A
Sbjct: 474  GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYA 533

Query: 229  RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            + +F++M ER+A S                                   WN++  G  + 
Sbjct: 534  KEIFNRMAERNAYS-----------------------------------WNSMIEGYQQN 558

Query: 289  GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
            G  +  L L  +M+      D  +    L +C  +   + G+E+H   VR    E   ++
Sbjct: 559  GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ 618

Query: 349  NALITMYSRCKDLRHAYILFKMTAEKSIIT------------------------------ 378
              L+ MY++C  + +A+ ++  T +K +I                               
Sbjct: 619  VVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTA 678

Query: 379  -WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
             WNS+L+GY +    +ES   F EM  S +E + +T+ +I+ LC+ +  L+HG + H  I
Sbjct: 679  LWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLI 738

Query: 438  LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
            +++   N  ++L  +LV+MY++ G + +A++VFD M+ ++ V++ ++I+GY   G  + A
Sbjct: 739  IKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEA 798

Query: 498  LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
            L L+EEM K  + P+ VT +A+LSACSH+GLV EG + F  M   Y I  + EH+ CMVD
Sbjct: 799  LILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVD 858

Query: 558  LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
            L GRAG L  AKE + KMP  P  + W  LLGAC++H++  +G  AA++L E  P+N G 
Sbjct: 859  LLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGP 918

Query: 618  YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
            YV+++N+YAA G W ++  +R  M+  GV+K PG +W++  +    F     ++ + +EI
Sbjct: 919  YVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEI 978

Query: 678  YPLLGGLTELMKDAGYVVKEEF 699
            Y  L  LT   K  GY+    F
Sbjct: 979  YNNLRHLTLQSKGLGYIPDTSF 1000



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 252/497 (50%), Gaps = 43/497 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I  C  ++ +   +QL +  +  GL  N  +   LV  YA F   ++A   ++  
Sbjct: 177 TFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEI 236

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + WN +I+ YV+   + EA  ++ +M    +  DNFT+ S L+ CG +   D G+
Sbjct: 237 EGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGK 296

Query: 196 VVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VHS + AC  +   FV NAL+ MY K    +   ++FD+M ER+ V+WN++ISA A  G
Sbjct: 297 QVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFG 356

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
            + +A  LF+ MQE G + N     +I                                 
Sbjct: 357 HFNDALVLFLRMQESGYKSNRFNLGSI--------------------------------- 383

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L A + +  +  G+E+HG  VR        + +AL+ MYS+C  +  A+ +F+   E+
Sbjct: 384 --LMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLER 441

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + +++N++L+GY     AEE+  L+ +M    G++P+  T  ++L LCA   N   G++ 
Sbjct: 442 NEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQI 501

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H +++ RA   +++++   LV MY+  G++  AK +F+ M+ R+  ++ S+I GY   GE
Sbjct: 502 HAHLI-RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGE 560

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF- 552
            + AL+LF++M  N IKPD  ++ ++LS+C     + + QK  E    I     + E   
Sbjct: 561 TQEALRLFKQMQLNGIKPDCFSLSSMLSSCVS---LSDSQKGRELHNFIVRNTMEEEGIL 617

Query: 553 -ACMVDLYGRAGLLNKA 568
              +VD+Y + G ++ A
Sbjct: 618 QVVLVDMYAKCGSMDYA 634



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 149/518 (28%), Positives = 246/518 (47%), Gaps = 48/518 (9%)

Query: 66  TAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125
           T  + DV    ++ +I  C    +  +GK +H   I+ G   +  L+ K++  YA     
Sbjct: 63  TKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCL 122

Query: 126 NNACF---LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
           ++ C+   L E    R    WN +I  Y R   Y E L +Y +M+      D FT+PSV+
Sbjct: 123 DDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVI 182

Query: 183 KACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
           KAC  M D+   R + S  + A    +LFV  ALV  Y +FG +D A    D++     V
Sbjct: 183 KACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVV 242

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           +WN +I+ Y     W+EA+ +F  M + GV             C     F   L +   +
Sbjct: 243 TWNAVIAGYVKILSWEEAWGIFDRMLKIGV-------------CPDNFTFASALRVCGAL 289

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
           R+++                       GK++H   +   +     V NALI MY++C D 
Sbjct: 290 RSRDG----------------------GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDE 327

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
                +F    E++ +TWNS++S         ++  LF  M  SG + N   + SIL   
Sbjct: 328 ESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMAS 387

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
           A +A++  G+E H +++R  + N  ++L ++LV+MY++ G V EA  VF  +  R+EV+Y
Sbjct: 388 AGLADIGKGRELHGHLVRN-LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSY 446

Query: 482 TSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQK---QFE 537
            +L+AGY  +G+   AL+L+ +M +++ I+PD  T   +L+ C++     +G++      
Sbjct: 447 NALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI 506

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           R      I  + E    +V +Y   G LN AKEI  +M
Sbjct: 507 RANITKNIIVETE----LVHMYSECGRLNYAKEIFNRM 540


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 192/622 (30%), Positives = 332/622 (53%), Gaps = 43/622 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S + I+  C  ++    G+++H   + +GL+ +      LV  Y+       A  + ++ 
Sbjct: 185 SISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQD- 243

Query: 136 NIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
            I +P  + WN +I+  V       AL +  +M+    R + FT  S LKAC  M   + 
Sbjct: 244 -IAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKEL 302

Query: 194 GRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR +HS +      S LF    LV MY K   +D ARR +D M ++D             
Sbjct: 303 GRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKD------------- 349

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                                 +I WN +  G  + G+    + L S+M +++   +   
Sbjct: 350 ----------------------IIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTT 387

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
               L + + + A+K+ K+IH  +++ G Y ++  V N+L+  Y +C  +  A  +F+  
Sbjct: 388 LSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFY-VINSLLDTYGKCNHIDEASKIFEER 446

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             + ++ + SM++ Y+     EE+  L+ +M  + ++P+    +S+L  CA ++  + GK
Sbjct: 447 TWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGK 506

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H + ++   F   +   NSLV MYA+ G + +A   F  +  R  V+++++I GY   
Sbjct: 507 QLHVHAIKFG-FMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQH 565

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G+ AL+LF +M ++ + P+H+T+V+VL AC+H+GLV EG++ FE+M  ++GI P  EH
Sbjct: 566 GHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEH 625

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +ACM+DL GR+G LN+A E++  +P+     +W  LLGA +IH+N  +G+ AA+ L +  
Sbjct: 626 YACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLE 685

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           PE SG +VL+AN+YA+ G W+ +AKVR  M+D  V+K PG +W++  +    F+V D S+
Sbjct: 686 PEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSH 745

Query: 672 VQAQEIYPLLGGLTELMKDAGY 693
            ++ EIY  L  L +L+  AGY
Sbjct: 746 SRSDEIYAKLDQLGDLLSKAGY 767



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 149/521 (28%), Positives = 252/521 (48%), Gaps = 42/521 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           +LHA  I  G  ++P L   LVT Y+    +  A  LV+ S+    + W+ L+S YV++G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHN 213
           F  EAL V+ +M    ++ + FT+PSVLKAC    D++ GR VH   +    E   FV N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
            LV MY K G +D +RRLF  ++ER+ VSWN + S Y    L  EA  LF EM   G+  
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           N  + + I                                   L AC+ +    LG++IH
Sbjct: 182 NEFSISII-----------------------------------LNACAGLQEGDLGRKIH 206

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G  ++      +   NAL+ MYS+  ++  A  +F+  A   +++WN++++G    DC +
Sbjct: 207 GLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCND 266

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
            +  L  EM  SG  PN  T++S L  CA +   + G++ H  +++    ++ L     L
Sbjct: 267 LALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSD-LFAAVGL 325

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           V+MY++   + +A+  +D M ++D + + +LI+GY   G+   A+ LF +M    I  + 
Sbjct: 326 VDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQ 385

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
            T+  VL + + S   ++  KQ   ++   GI+        ++D YG+   +++A +I  
Sbjct: 386 TTLSTVLKSVA-SLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFE 444

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           +  +    A  + +    Q     G GE A +  L+ +  +
Sbjct: 445 ERTWEDLVAYTSMITAYSQY----GDGEEALKLYLQMQDAD 481



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 238/520 (45%), Gaps = 39/520 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C   + L  G+++H  A+  G E +  +   LV  YA   L +++  L    
Sbjct: 84  TFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGI 143

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN L S YV+     EA+ ++K+M    I  + F+   +L AC  + + D GR
Sbjct: 144 VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGR 203

Query: 196 VVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   +    +   F  NALV MY K G+++ A  +F  +   D VSWN +I+      
Sbjct: 204 KIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHD 263

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A  L  EM+  G   N+ T ++                                  
Sbjct: 264 CNDLALMLLDEMKGSGTRPNMFTLSS---------------------------------- 289

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +G  +LG+++H S ++            L+ MYS+C+ +  A   +    +K
Sbjct: 290 -ALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKK 348

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            II WN+++SGY+      ++  LF +MF   ++ N  T++++L   A +  ++  K+ H
Sbjct: 349 DIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIH 408

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              ++  ++++  ++ NSL++ Y +   + EA  +F+  +  D V YTS+I  Y   G+G
Sbjct: 409 TISIKSGIYSDFYVI-NSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDG 467

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             ALKL+ +M    IKPD     ++L+AC++     +G KQ       +G    +     
Sbjct: 468 EEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQG-KQLHVHAIKFGFMCDIFASNS 526

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           +V++Y + G +  A    +++P     + W+ ++G    H
Sbjct: 527 LVNMYAKCGSIEDADRAFSEIPNRGIVS-WSAMIGGYAQH 565



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 28/243 (11%)

Query: 58  EAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           E   ++ +     D+  D F  + ++  C  + A  QGKQLH  AI  G   +      L
Sbjct: 468 EEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSL 527

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           V  YA      +A         R  + W+ +I  Y + G   EAL ++ QM    +  ++
Sbjct: 528 VNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNH 587

Query: 176 FTYPSVLKACG------------EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFG 223
            T  SVL AC             E M+V FG      I    E     +  ++ + G+ G
Sbjct: 588 ITLVSVLCACNHAGLVNEGKQYFEKMEVMFG------IKPTQEH----YACMIDLLGRSG 637

Query: 224 QVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
           +++ A  L + +  E D   W  ++ A   + +  L ++A ++  +++ E    +V+  N
Sbjct: 638 KLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLAN 697

Query: 280 TIA 282
             A
Sbjct: 698 IYA 700


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 199/666 (29%), Positives = 335/666 (50%), Gaps = 41/666 (6%)

Query: 30  INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           + N+ ++  N L  +  +A  G++ +AF  F ++        ++  +F  ++  C     
Sbjct: 118 VENKTVVTWNAL--IAGYAQVGHVKEAFALFRQMVDEGLEPSII--TFLSVLDACSSPAG 173

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L  GK++HA  +  G   +  +   LV+ Y      ++A  + +  +IR    +N+++  
Sbjct: 174 LNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGG 233

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           Y + G + +A  ++ +MQ   ++ +  ++ S+L  C     + +G+ VH+ C++A     
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD 293

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           + V  +L+ MY   G ++ ARR+FD M  RD VSW  MI                     
Sbjct: 294 IRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIE-------------------- 333

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                          G    GN +    L + M+ +    D +  +  + AC+    L  
Sbjct: 334 ---------------GYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNH 378

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
            +EIH       +G    V  AL+ MY++C  ++ A  +F     + +++W++M+  Y  
Sbjct: 379 AREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVE 438

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
                E+   F  M RS +EP+ VT  ++L  C  +  L  G E +   ++  + + H+ 
Sbjct: 439 NGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVS-HVP 497

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           L N+L+ M A+ G V  A+ +FD M RRD +T+ ++I GY + G  R AL LF+ M K +
Sbjct: 498 LGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKER 557

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
            +P+ VT V VLSACS +G V EG++ F  +    GI P ++ + CMVDL GRAG L++A
Sbjct: 558 FRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEA 617

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
           + +I  MP  PTS++W++LL AC+IH N  + E AAE+ L   P +   YV +++MYAA 
Sbjct: 618 ELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAA 677

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           G W+ +AKVR  M   G+RK  GC W++       F+V+D S+    EIY  L  L   +
Sbjct: 678 GMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAI 737

Query: 689 KDAGYV 694
           K  GY+
Sbjct: 738 KREGYI 743



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 221/479 (46%), Gaps = 40/479 (8%)

Query: 27  KQPINNEHIMRINLLETL-KDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCG 85
           +Q  +  HI  ++    +   +A  G+  KAFE F R++      + +  SF  I+  C 
Sbjct: 213 RQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKI--SFLSILDGCW 270

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
             +ALA GK +HA  +  GL  +  +   L+  Y +      A  + +N  +R  + W +
Sbjct: 271 TPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTV 330

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-AC 204
           +I  Y  +G   +A  ++  MQ   I+ D  TY  ++ AC    +++  R +HS +D A 
Sbjct: 331 MIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAG 390

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
               L V  ALV MY K G +  AR++FD M  RD VSW+ MI AY   G   EAF+ F 
Sbjct: 391 FGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFH 450

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
            M+   +E + +T+  +                                   L AC H+G
Sbjct: 451 LMKRSNIEPDGVTYINL-----------------------------------LNACGHLG 475

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           AL +G EI+  A++     +  + NALI M ++   +  A  +F     + +ITWN+M+ 
Sbjct: 476 ALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIG 535

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY+    A E+ +LF  M +    PN VT   +L  C+R   +  G+ F  Y+L      
Sbjct: 536 GYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIV 595

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSLIAGYGIQGEGRVALKLFE 502
             + L+  +V++  R+G++ EA+ +   M  +   + ++SL+    I G   VA +  E
Sbjct: 596 PTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAE 654



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 156/618 (25%), Positives = 273/618 (44%), Gaps = 67/618 (10%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C +++  A GKQ+    I  G + N   +  L+  Y+       A  + ++   +  + W
Sbjct: 67  CTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTW 126

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N LI+ Y + G   EA  +++QM    +     T+ SVL AC     +++G+ VH+ +  
Sbjct: 127 NALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVT 186

Query: 204 CHEWSLF-VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
               S F +  ALVSMY K G +D AR++FD +  RD                       
Sbjct: 187 AGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRD----------------------- 223

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
                       V T+N + GG  ++G+++   EL  RM+      + ++ +  L  C  
Sbjct: 224 ------------VSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWT 271

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
             AL  GK +H   +     +   V  +LI MY+ C  +  A  +F     + +++W  M
Sbjct: 272 PEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVM 331

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           + GY      E++  LF  M   G++P+ +T   I+  CA  ANL H +E H  +   A 
Sbjct: 332 IEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV-DIAG 390

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F   LL+  +LV MYA+ G + +A+ VFD M RRD V+++++I  Y   G G  A + F 
Sbjct: 391 FGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFH 450

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M ++ I+PD VT + +L+AC H G +  G + + +      +   +     ++ +  + 
Sbjct: 451 LMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKA-DLVSHVPLGNALIIMNAKH 509

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR-PENSGYYVLI 621
           G + +A+ I   M        W  ++G   +H N     +  +++L+ R   NS  +V +
Sbjct: 510 GSVERARYIFDTMVRRDV-ITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGV 568

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
                          +  C R           +VD G  F  +L++    V   ++Y   
Sbjct: 569 ---------------LSACSR---------AGFVDEGRRFFTYLLEGRGIVPTVKLY--- 601

Query: 682 GGLTELMKDAGYVVKEEF 699
           G + +L+  AG + + E 
Sbjct: 602 GCMVDLLGRAGELDEAEL 619



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 142/285 (49%), Gaps = 6/285 (2%)

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NA 350
           G  ++L R+     ++DS   V     C+ +    LGK++    ++G  G   N+   N 
Sbjct: 40  GANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQG--GRQLNIYELNT 97

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI +YS C ++  A  +F     K+++TWN++++GY  +   +E+  LFR+M   G+EP+
Sbjct: 98  LIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPS 157

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            +T  S+L  C+  A L  GKE H  ++  A F     +  +LV MY + G + +A+ VF
Sbjct: 158 IITFLSVLDACSSPAGLNWGKEVHAQVV-TAGFVSDFRIGTALVSMYVKGGSMDDARQVF 216

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           D +  RD  T+  ++ GY   G+   A +LF  M +  +KP+ ++ +++L  C     + 
Sbjct: 217 DGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALA 276

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            G+    +  +  G+   +     ++ +Y   G +  A+ +   M
Sbjct: 277 WGKAVHAQCMNA-GLVDDIRVATSLIRMYTTCGSIEGARRVFDNM 320


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 202/606 (33%), Positives = 326/606 (53%), Gaps = 43/606 (7%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G ++HA  +      +  +   LV  +  F   + A  + +  + +  + WN +I+ + +
Sbjct: 131 GMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQ 190

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW---SL 209
           +G Y EAL  +  +Q   ++ D  +  S+L A G +  +  G+ +H+   A   W   +L
Sbjct: 191 NGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAY--AMKNWLDSNL 248

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            + N L+ MY K   V  A  +FDKM+ +D +SW T+I+AYA      EA          
Sbjct: 249 RIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEA---------- 298

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
                                    L+LL +++T+   +D++     L ACS +  L   
Sbjct: 299 -------------------------LKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHA 333

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           KE+HG  ++    +   ++N +I +Y+ C ++ +A  +F+    K +++W SM+S Y H 
Sbjct: 334 KEVHGYTLKRGLSDLM-MQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHN 392

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
             A E+  +F  M  + VEP+ +T+ SIL   A ++ L  GKE H +I R+    E   +
Sbjct: 393 GLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTV 452

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            NSLV+MYA  G +  A  VF     +  V +T++I  YG+ G G+ A++LF  M   ++
Sbjct: 453 -NSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKL 511

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            PDH+T +A+L ACSHSGL+ EG++  E M   Y + P  EH+AC+VDL GRA  L +A 
Sbjct: 512 IPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAY 571

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
             +  M   PT+ +W   LGAC+IH N  +GE AA+KLL+  P++ G YVLI+N++AA+G
Sbjct: 572 HFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASG 631

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE-LM 688
            W  + +VR  M+  G++K PGC+W++ GN    FLV D S+ ++ +IY  L  +TE L 
Sbjct: 632 RWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLE 691

Query: 689 KDAGYV 694
           K+ GYV
Sbjct: 692 KEGGYV 697



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/563 (25%), Positives = 269/563 (47%), Gaps = 48/563 (8%)

Query: 72  VVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           V  DSF    ++  CG V+ + +G ++H   I  G +    +   LV+ YA  +    A 
Sbjct: 6   VPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGAR 65

Query: 130 FLVENSNIRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
            L +  N R  +  WN +IS Y  +G   EAL ++++MQ   +  + +T  + L+AC + 
Sbjct: 66  KLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDS 125

Query: 189 MDVDFGRVVHSCIDACHE-WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
                G  +H+ I   ++   ++V NALV+M+ +FG++  A R+FD++ E+D        
Sbjct: 126 SFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDN------- 178

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
                                       ITWN++  G  + G +   L+    ++     
Sbjct: 179 ----------------------------ITWNSMIAGFTQNGLYNEALQFFCGLQDANLK 210

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
            D V+ +  L A   +G L  GKEIH  A++        + N LI MYS+C  + +A ++
Sbjct: 211 PDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLV 270

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F     K +I+W ++++ Y   +C  E+  L R++   G++ + + I S L  C+ +  L
Sbjct: 271 FDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCL 330

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            H KE H Y L+R + +  L++ N ++++YA  G +  A  +F+ +  +D V++TS+I+ 
Sbjct: 331 SHAKEVHGYTLKRGLSD--LMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISC 388

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           Y   G    AL +F  M +  ++PD +T+V++LSA +    + +G K+        G   
Sbjct: 389 YVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKG-KEIHGFIFRKGFML 447

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE-- 605
           +      +VD+Y   G L  A ++      + +  +W T++ A  +H   G G+ A E  
Sbjct: 448 EGSTVNSLVDMYACCGSLENAYKVFI-CTRSKSLVLWTTMINAYGMH---GRGKAAVELF 503

Query: 606 KLLETRPENSGYYVLIANMYAAT 628
            ++E +     +   +A +YA +
Sbjct: 504 SIMEDQKLIPDHITFLALLYACS 526



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 146/293 (49%), Gaps = 8/293 (2%)

Query: 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
           MR      DS      L AC  V  +  G EIHG  ++  Y     V N+L++MY++C D
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 361 LRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
           +  A  LF +M     +++WNS++S Y+      E+  LFREM ++GV  N  T+ + L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLW--NSLVEMYARSGKVPEAKSVFDLMSRRD 477
            C   +  + G E H  IL+    N+ L ++  N+LV M+ R GK+  A  +FD +  +D
Sbjct: 121 ACEDSSFKKLGMEIHAAILKS---NQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKD 177

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            +T+ S+IAG+   G    AL+ F  +    +KPD V+++++L+A    G ++ G K+  
Sbjct: 178 NITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNG-KEIH 236

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
                  +   L     ++D+Y +   +  A  +  KM      + W T++ A
Sbjct: 237 AYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLIS-WTTVIAA 288



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 7/251 (2%)

Query: 58  EAFTRIR-ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
           EA   +R +     DV        +  C  ++ L+  K++H   +  GL  + ++   ++
Sbjct: 297 EALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMII 355

Query: 117 TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
             YA     N A  + E+   +  + W  +IS YV +G   EAL V+  M+   +  D+ 
Sbjct: 356 DVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSI 415

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           T  S+L A   +  ++ G+ +H  I       E S    N+LV MY   G ++ A ++F 
Sbjct: 416 TLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTV--NSLVDMYACCGSLENAYKVFI 473

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
               +  V W TMI+AY   G  K A +LF  M+++ +  + IT+  +   C  +G    
Sbjct: 474 CTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINE 533

Query: 294 VLELLSRMRTQ 304
              LL  M+ +
Sbjct: 534 GKRLLETMKCK 544


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 204/621 (32%), Positives = 321/621 (51%), Gaps = 37/621 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  II  C  +  +  G+QLHA  +      + +    L++ Y   +L  +A  +    
Sbjct: 166 TFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRM 225

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFG 194
             R  + W  +I+ + + G+  EALC +K+M  + +   N F + SV  AC  ++  ++G
Sbjct: 226 ATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYG 285

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           R +H                   M  KFG            L RD  +  ++   YA  G
Sbjct: 286 RQLHG------------------MSIKFG------------LGRDVFAGCSLCDMYAKCG 315

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L   A  +F ++       +++ WN I  G    G+ K  +   S+MR Q    D +   
Sbjct: 316 LLSCARVVFYQIGRP----DLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVR 371

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-MTAE 373
             L AC+    L  G ++HG   +        V N L+TMY++C +LR A   F+ M   
Sbjct: 372 SLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCN 431

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
             +++WN++L+     D AEE   L + M  S   P+Y+T+ ++L   A   +++ G + 
Sbjct: 432 ADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQV 491

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           HCY L+  + N    + N L+++YA+ G +  A  +FD M   D V+++SLI GY   G 
Sbjct: 492 HCYALKTGL-NCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGY 550

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  ALKLF+ M +  +KP+HVT V VL+ACSH GLV EG K +  M   +GI P  EH +
Sbjct: 551 GEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCS 610

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVDL  RAG LN+A+  I +M + P   +W TLL AC+ H N  +G+ AAE +L+  P 
Sbjct: 611 CMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPS 670

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           NS  +VL+ N+YA+ G W+ +A++R+ M+  GVRK+PG +W++  +    F V+D+ + +
Sbjct: 671 NSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPE 730

Query: 674 AQEIYPLLGGLTELMKDAGYV 694
             +IY +L  L   M DAGYV
Sbjct: 731 RNKIYTMLEELLLQMLDAGYV 751



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 134/542 (24%), Positives = 246/542 (45%), Gaps = 45/542 (8%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           + L ++A++I  C  +++L  GK++H   +      +  L   ++  Y       +A  +
Sbjct: 61  LTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKV 120

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +    R  + W  +I+ Y ++G    AL  Y QM    +  D FT+ S++KAC  + D+
Sbjct: 121 FDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDI 180

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             GR +H+  + +     +   NAL+SMY K   +  A  +F +M  RD +SW +MI+ +
Sbjct: 181 GLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGF 240

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           +  G   EA   F EM  +GV +                               E    S
Sbjct: 241 SQLGYELEALCYFKEMLHQGVYL-----------------------------PNEFIFGS 271

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           V       ACS +   + G+++HG +++   G       +L  MY++C  L  A ++F  
Sbjct: 272 V-----FSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQ 326

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
                ++ WN++++G+ +   A+E+   F +M   G+ P+ +T+ S+L  C   + L  G
Sbjct: 327 IGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQG 386

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYG 489
            + H YI +  + +  + + N+L+ MYA+  ++ +A   F+ M    D V++ +++    
Sbjct: 387 MQVHGYINKMGL-DLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACM 445

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
              +     +L + M  +Q +PD++T+  VL A + + + +E   Q        G+    
Sbjct: 446 RHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAET-VSIEIGNQVHCYALKTGLNCDT 504

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL-LGACQIHRNTGIGEWAAEKLL 608
                ++DLY + G L  A +I   M   P    W++L LG  Q     G GE  A KL 
Sbjct: 505 SVTNGLIDLYAKCGSLKTAHKIFDSM-INPDVVSWSSLILGYAQF----GYGE-EALKLF 558

Query: 609 ET 610
           +T
Sbjct: 559 KT 560



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 204/463 (44%), Gaps = 40/463 (8%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF-TYPSVLKACGEMMDVDF 193
           S +R     N  I+   +   + EA+  ++ +Q +        TY  ++ AC  +  ++ 
Sbjct: 22  SKLRAEQSSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEH 81

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G+ +H   + +     L + N +++MYGK   +  A+++FD M ER              
Sbjct: 82  GKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPER-------------- 127

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                                NV++W ++  G  + G     LE   +M       D   
Sbjct: 128 ---------------------NVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFT 166

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               + ACS +G + LG+++H   ++  +G +   +NALI+MY++   +  A  +F   A
Sbjct: 167 FGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMA 226

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE-PNYVTIASILPLCARVANLQHGK 431
            + +I+W SM++G++ L    E+   F+EM   GV  PN     S+   C+ +   ++G+
Sbjct: 227 TRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGR 286

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H   ++  +    +    SL +MYA+ G +  A+ VF  + R D V + ++IAG+   
Sbjct: 287 QLHGMSIKFGL-GRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYG 345

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G+ + A+  F +M    + PD +T+ ++L AC+    + +G  Q     +  G+   +  
Sbjct: 346 GDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGM-QVHGYINKMGLDLDVPV 404

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
              ++ +Y +   L  A     +M        W  +L AC  H
Sbjct: 405 CNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRH 447


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 201/624 (32%), Positives = 333/624 (53%), Gaps = 48/624 (7%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           K + + KQ H      GL+ +  ++PKL+T  ++F+L + A                   
Sbjct: 13  KNIRELKQTHLQIFIHGLQHSDFMLPKLITVSSAFNLLDYAT------------------ 54

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHE 206
                   + EAL VY +M++  +  ++FT+  +LK       ++ GRV+H   +     
Sbjct: 55  --------HKEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFG 106

Query: 207 WSLFVHNALVSMYGKFGQ-VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
            S+FV N+L+  Y    + +  A R+F++M ERD +SWN+MISAY ++G  + A  L  +
Sbjct: 107 SSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDK 166

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           M E     N++TWN++  G  + GN    +EL   +  Q    + V+    +     +G 
Sbjct: 167 MPER----NIVTWNSVVCGLSKAGN----MELAHSVFEQMPLRNEVSWNSMISGYVRIGD 218

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           ++  + I           +     A+I+ Y+   DL+ A  +F     K++++WN+M+SG
Sbjct: 219 VRAAQSIFYQMPEKTVVSW----TAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISG 274

Query: 386 YTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           Y H    +++  +F  M  +G   P+  T+ SIL  CA + +L+HGK  + YI ++   +
Sbjct: 275 YVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYI-KKNKLH 333

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             + L N+L++M+A+ G V  AK VF  MS+R  +T+T++++G  + G+ R A+ LF++M
Sbjct: 334 LSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKM 393

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
                KPD V  +AVLSAC+H GLV EG++ F++M   +GI P++EH+ CMVDL GRAG 
Sbjct: 394 CLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGK 453

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L +A     +M   P + +WATLL  C+IH N  + +   EK+++  P N  Y  L++N+
Sbjct: 454 LEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNL 513

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG-- 682
            A+ G W+ +   R  MR   + K+PGC+ +  GN    FL  DT +VQ +EIY  L   
Sbjct: 514 SASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRALSHY 573

Query: 683 -GLTELMKDA-GYVVKE--EFCSE 702
              TE+     G++ KE   FC +
Sbjct: 574 KNATEMETTPFGFLAKELLSFCVQ 597


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 207/633 (32%), Positives = 327/633 (51%), Gaps = 70/633 (11%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN+++  Y + GF  EAL +Y +M    +R D +T+P VL+ CG + D   GR VH+  +
Sbjct: 165 WNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVL 224

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                  + V NALV+MY K G +  AR++FD M   D +SWN MI+ +      +   +
Sbjct: 225 RFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLE 284

Query: 262 LFVEMQEEGVEVNVITWN--TIAGGCLRTGNFKGVL------------------------ 295
           LF+ M E  V+ N++T    T+A G L    F   +                        
Sbjct: 285 LFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYT 344

Query: 296 ---------ELLSRMRTQET--------------YLDSVATVIGLGACSHV--------- 323
                    ++ SRM T++               + D    V  L    +V         
Sbjct: 345 SLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIAS 404

Query: 324 --------GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
                   G L +G ++H  A    +  Y  V NAL+ MY++ K +  A  +FK  AEK 
Sbjct: 405 ALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKD 464

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W+SM++G+     + E+ + FR M    V+PN VT  + L  CA    L+ GKE H 
Sbjct: 465 VVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAATGALRSGKEIHA 523

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y+LR  + +E  +  N+L+++Y + G+   A + F + S +D V++  +++G+   G G 
Sbjct: 524 YVLRCGIGSEGYVP-NALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGD 582

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
           +AL LF +M +    PD VT VA+L ACS +G+V++G + F  MT  + I P L+H+ACM
Sbjct: 583 IALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACM 642

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VDL  R G L +A  +I +MP  P +A+W  LL  C+IHR+  +GE AA+ +LE  P + 
Sbjct: 643 VDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDV 702

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
            Y+VL+ ++Y   G W ++A+VR  MR+ G+ +  GC+WV+   V   FL DD S+ Q +
Sbjct: 703 AYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIK 762

Query: 676 EIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           EI  +L G+ E MK  G+   E    ++E+ E+
Sbjct: 763 EINVVLHGIYERMKACGFAPVESL-EDKEVSED 794



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 219/479 (45%), Gaps = 46/479 (9%)

Query: 159 ALCVYKQM-------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLF 210
           ALC + Q+       +S     D   Y ++ + C     VD G    +  DA H  + L 
Sbjct: 73  ALCSHGQLAQALWLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLR 132

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + NA++SM  +FG++  A R+F KM ERD                               
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERD------------------------------- 161

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
               V +WN + GG  + G  +  L+L  RM       D       L  C  +   ++G+
Sbjct: 162 ----VFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGR 217

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           E+H   +R  +G+  +V NAL+TMY++C D+  A  +F   A    I+WN+M++G+    
Sbjct: 218 EVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENH 277

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             E    LF  M  + V+PN +TI S+      ++ +   KE H + ++R  F   +   
Sbjct: 278 ECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRG-FAIDVAFC 336

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           NSL++MY   G++ +A  +F  M  +D +++T++I+GY   G    AL+++  M  + + 
Sbjct: 337 NSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVS 396

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD VT+ + L+AC+  G +  G K  E +    G    +     ++++Y ++  ++KA E
Sbjct: 397 PDDVTIASALAACACLGRLDVGIKLHE-LAQNKGFIRYVVVANALLEMYAKSKHIDKAIE 455

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           +   M      +  + + G C  HR+     +    L   +P NS  ++   +  AATG
Sbjct: 456 VFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVKP-NSVTFIAALSACAATG 513



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 191/441 (43%), Gaps = 41/441 (9%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
           L +   +    G +  +   K++H  A+  G   +      L+  Y S     +A  +  
Sbjct: 298 LMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFS 357

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
               +  + W  +IS Y ++GF  +AL VY  M+   +  D+ T  S L AC  +  +D 
Sbjct: 358 RMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDV 417

Query: 194 GRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H    +      + V NAL+ MY K   +D A  +F  M E+D VSW++M      
Sbjct: 418 GIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSM------ 471

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                                       IAG C    +F+ +     R        +SV 
Sbjct: 472 ----------------------------IAGFCFNHRSFEALYYF--RYMLGHVKPNSVT 501

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            +  L AC+  GAL+ GKEIH   +R   G    V NAL+ +Y +C    +A+  F + +
Sbjct: 502 FIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHS 561

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           EK +++WN MLSG+      + +  LF +M   G  P+ VT  ++L  C+R   +  G E
Sbjct: 562 EKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWE 621

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQ 491
               +  +     +L  +  +V++ +R GK+ EA ++ + M  + D   + +L+ G  I 
Sbjct: 622 LFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIH 681

Query: 492 GE---GRVALKLFEEMNKNQI 509
                G +A K+  E+  N +
Sbjct: 682 RHVELGELAAKVILELEPNDV 702



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 155/381 (40%), Gaps = 49/381 (12%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAAS-HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           +  +   G   KA E +  + +   S  DV + S      C G+   L  G +LH  A  
Sbjct: 371 ISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGR---LDVGIKLHELAQN 427

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            G  +  V+   L+  YA     + A  + +    +  + W+ +I+ +  +    EAL  
Sbjct: 428 KGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYY 487

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-FVHNALVSMYGK 221
           ++ M    ++ ++ T+ + L AC     +  G+ +H+ +  C   S  +V NAL+ +Y K
Sbjct: 488 FRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVK 546

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            GQ   A   F    E+D VSWN M+S + + GL   A  LF +M E G   + +T+  +
Sbjct: 547 CGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVAL 606

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
              C R G      EL   M  + + + ++       AC                     
Sbjct: 607 LCACSRAGMVIQGWELFHMMTEKFSIVPNLKHY----AC--------------------- 641

Query: 342 GEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSG---YTHLDCAEESAF 397
                    ++ + SR   L  AY L  +M  +     W ++L+G   + H++  E +A 
Sbjct: 642 ---------MVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAK 692

Query: 398 LFREMFRSGVEPNYVTIASIL 418
           +  E+     EPN V    +L
Sbjct: 693 VILEL-----EPNDVAYHVLL 708


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 198/641 (30%), Positives = 335/641 (52%), Gaps = 50/641 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA     C  + A   G QLHA A+      + ++        A+  +Y     +V+  
Sbjct: 273 TFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGT------ATLDMYAKCDRMVDAR 326

Query: 136 NI--RYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            +   +P P     N LI  Y R     EAL +++ +Q   +  D  +    L AC  + 
Sbjct: 327 KVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIK 386

Query: 190 DVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
               G  +H     C  ++++ V N ++ MY K G +  A  +FD M  +DAVSWN +I+
Sbjct: 387 GYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIA 446

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
           A+      +E   LFV M    +E +  T+ ++                           
Sbjct: 447 AHEQNEHVEETLALFVSMLRSTMEPDDYTFGSV--------------------------- 479

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   + AC+   AL  G E+HG  ++   G    V +A+I MY +C  L  A  + 
Sbjct: 480 --------VKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIH 531

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
           +   E++ ++WNS++SG++     E +   F  M + GV P+  T A++L +CA +A ++
Sbjct: 532 ERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVE 591

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GK+ H  IL+  + ++ + + +++V+MY++ G + +++ +F+   +RD VT++++I  Y
Sbjct: 592 LGKQIHGQILKLQLHSD-VYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAY 650

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G G  A+KLFEEM    +KP+H   ++VL AC+H G V +G   F  M S YG+ PQ
Sbjct: 651 AYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQ 710

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH++CMVDL GR+G +N+A E+I  MP+     +W TLLG C++  N  + E AA  LL
Sbjct: 711 MEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLL 770

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           +  P++S  YVL++N+YA  G W ++AK+R+ M++  ++K PGC+W+   +    FLV D
Sbjct: 771 QLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGD 830

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYVVK-EEFCSEEEIVEE 708
            ++ +++EIY     L + MK  GYV + + F  +EE+ E+
Sbjct: 831 KAHPRSEEIYQQTHLLVDEMKWDGYVPEIDGFLLDEEVDEQ 871



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 133/561 (23%), Positives = 252/561 (44%), Gaps = 44/561 (7%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           K+ E FT++R+    HD    +FA ++  C  ++    G Q+H  AI +G + + V    
Sbjct: 153 KSIEIFTKMRLLEIQHDYA--TFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTA 210

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV  Y++    ++A  +      R  + W+ +I+ YVR+  + E L +YK M    +   
Sbjct: 211 LVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVS 270

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
             T+ S  ++C  +   + G  +H+  +     +   V  A + MY K  ++  AR++F+
Sbjct: 271 QATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFN 330

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
                   S N +I  YA +    EA ++F  +Q+  ++                     
Sbjct: 331 TFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLD--------------------- 369

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                          D ++    L ACS +     G ++HG AV+        V N ++ 
Sbjct: 370 --------------FDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILD 415

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY++C  L  A ++F     K  ++WN++++ +   +  EE+  LF  M RS +EP+  T
Sbjct: 416 MYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYT 475

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S++  CA    L +G E H  +++  M      + +++++MY + G + EA+ + + +
Sbjct: 476 FGSVVKACAGKKALNYGMEVHGRVIKSGM-GLDWFVGSAIIDMYCKCGMLVEAEKIHERL 534

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             R  V++ S+I+G+  + +G  AL  F  M +  + PD+ T   VL  C++    VE  
Sbjct: 535 EERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLA-TVELG 593

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           KQ         +   +   + +VD+Y + G +  ++ +  K P       W+ ++ A   
Sbjct: 594 KQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAY 652

Query: 594 HRNTGIGEWAAEKLLETRPEN 614
           H   G+GE A +   E + +N
Sbjct: 653 H---GLGEDAIKLFEEMQLQN 670



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 204/416 (49%), Gaps = 8/416 (1%)

Query: 176 FTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            T+  + + C  +  ++ G+  H+ I       ++FV N L+  Y K   ++ A  +FDK
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M +RD +SWNTMI  YA  G  + A  LF  M E     +V++WN++    L+ G  +  
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPER----DVVSWNSMLSCYLQNGFHRKS 154

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           +E+ ++MR  E   D     + L AC+ +    LG ++H  A++  +        AL+ M
Sbjct: 155 IEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDM 214

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           YS CK L HA+ +F    E++ + W+++++GY   D   E   L++ M   G+  +  T 
Sbjct: 215 YSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATF 274

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           AS    CA ++  + G + H Y L+   F    ++  + ++MYA+  ++ +A+ VF+   
Sbjct: 275 ASAFRSCAGLSAFELGTQLHAYALKTN-FGYDNIVGTATLDMYAKCDRMVDARKVFNTFP 333

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
                ++ +LI GY  Q +   AL++F  + K+ +  D +++   L+ACS     +EG  
Sbjct: 334 NPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEG-I 392

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           Q   +    G+   +     ++D+Y + G L +A  I   M     +  W  ++ A
Sbjct: 393 QLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDME-IKDAVSWNAIIAA 447



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 224/477 (46%), Gaps = 41/477 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A +  + +A E F  ++ +    D +  S +  +  C  +K   +G QLH  A+  GL+
Sbjct: 347 YARQDQVLEALEIFRSLQKSYLDFDEI--SLSGALTACSAIKGYLEGIQLHGLAVKCGLD 404

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   ++  YA       AC + ++  I+  + WN +I+ + ++    E L ++  M
Sbjct: 405 FNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSM 464

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               +  D++T+ SV+KAC     +++G  VH   I +      FV +A++ MY K G +
Sbjct: 465 LRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGML 524

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A ++ +++ ER  VSWN++IS ++S+   + A   F  M + GV  +  T+ T+    
Sbjct: 525 VEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATV---- 580

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          L  C+++  ++LGK+IHG  ++       
Sbjct: 581 -------------------------------LDICANLATVELGKQIHGQILKLQLHSDV 609

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            + + ++ MYS+C +++ + I+F+   ++  +TW++M+  Y +    E++  LF EM   
Sbjct: 610 YIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQ 669

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            V+PN+    S+L  CA +  +  G  +   +      +  +  ++ +V++  RSG+V E
Sbjct: 670 NVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNE 729

Query: 466 AKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           A  + + M    D+V + +L+    +QG   VA K    +   Q+ P   +   +LS
Sbjct: 730 ALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSL--LQLDPQDSSAYVLLS 784



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 127/554 (22%), Positives = 254/554 (45%), Gaps = 84/554 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYNN- 127
           +F+HI   C  +KA+  GKQ HA     G      +   L+ FY        +F++++  
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 128 -----------------------ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
                                  A FL ++   R  + WN ++S Y+++GF+ +++ ++ 
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M+   I+ D  T+  VLKAC  + D   G  VH   I    +  +    ALV MY    
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++D A  +F +M ER++V W+ +I+ Y     + E  +L+  M +EG+ V+  T+ +   
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFAS--- 276

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                              +C+ + A +LG ++H  A++  +G 
Sbjct: 277 --------------------------------AFRSCAGLSAFELGTQLHAYALKTNFGY 304

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V  A + MY++C  +  A  +F      +  + N+++ GY   D   E+  +FR + 
Sbjct: 305 DNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQ 364

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGK 462
           +S ++ + ++++  L  C+ +     G + H   ++  + FN  + + N++++MYA+ G 
Sbjct: 365 KSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFN--ICVANTILDMYAKCGA 422

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + EA  +FD M  +D V++ ++IA +         L LF  M ++ ++PD  T  +V+ A
Sbjct: 423 LMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKA 482

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQ----LEHF--ACMVDLYGRAGLLNKAKEIITKMP 576
           C+       G+K       ++G   +    L+ F  + ++D+Y + G+L +A++I  ++ 
Sbjct: 483 CA-------GKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLE 535

Query: 577 YTPTSAMWATLLGA 590
              T+  W +++  
Sbjct: 536 -ERTTVSWNSIISG 548


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 207/633 (32%), Positives = 327/633 (51%), Gaps = 70/633 (11%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN+++  Y + GF  EAL +Y +M    +R D +T+P VL+ CG + D   GR VH+  +
Sbjct: 165 WNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVL 224

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                  + V NALV+MY K G +  AR++FD M   D +SWN MI+ +      +   +
Sbjct: 225 RFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLE 284

Query: 262 LFVEMQEEGVEVNVITWN--TIAGGCLRTGNFKGVL------------------------ 295
           LF+ M E  V+ N++T    T+A G L    F   +                        
Sbjct: 285 LFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYT 344

Query: 296 ---------ELLSRMRTQET--------------YLDSVATVIGLGACSHV--------- 323
                    ++ SRM T++               + D    V  L    +V         
Sbjct: 345 SLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIAS 404

Query: 324 --------GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
                   G L +G ++H  A    +  Y  V NAL+ MY++ K +  A  +FK  AEK 
Sbjct: 405 ALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKD 464

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W+SM++G+     + E+ + FR M    V+PN VT  + L  CA    L+ GKE H 
Sbjct: 465 VVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAATGALRSGKEIHA 523

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y+LR  + +E  +  N+L+++Y + G+   A + F + S +D V++  +++G+   G G 
Sbjct: 524 YVLRCGIGSEGYVP-NALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGD 582

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
           +AL LF +M +    PD VT VA+L ACS +G+V++G + F  MT  + I P L+H+ACM
Sbjct: 583 IALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACM 642

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VDL  R G L +A  +I +MP  P +A+W  LL  C+IHR+  +GE AA+ +LE  P + 
Sbjct: 643 VDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDV 702

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
            Y+VL+ ++Y   G W ++A+VR  MR+ G+ +  GC+WV+   V   FL DD S+ Q +
Sbjct: 703 AYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIK 762

Query: 676 EIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           EI  +L G+ E MK  G+   E    ++E+ E+
Sbjct: 763 EINVVLHGIYERMKACGFAPVESL-EDKEVSED 794



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 219/479 (45%), Gaps = 46/479 (9%)

Query: 159 ALCVYKQM-------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLF 210
           ALC + Q+       +S     D   Y ++ + C     VD G    +  DA H  + L 
Sbjct: 73  ALCSHGQLAQALWLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLR 132

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + NA++SM  +FG++  A R+F KM ERD                               
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERD------------------------------- 161

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
               V +WN + GG  + G  +  L+L  RM       D       L  C  +   ++G+
Sbjct: 162 ----VFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGR 217

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           E+H   +R  +G+  +V NAL+TMY++C D+  A  +F   A    I+WN+M++G+    
Sbjct: 218 EVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENH 277

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             E    LF  M  + V+PN +TI S+      ++ +   KE H + ++R  F   +   
Sbjct: 278 ECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRG-FAIDVAFC 336

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           NSL++MY   G++ +A  +F  M  +D +++T++I+GY   G    AL+++  M  + + 
Sbjct: 337 NSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVS 396

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD VT+ + L+AC+  G +  G K  E +    G    +     ++++Y ++  ++KA E
Sbjct: 397 PDDVTIASALAACACLGRLDVGIKLHE-LAQNKGFIRYVVVANALLEMYAKSKHIDKAIE 455

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           +   M      +  + + G C  HR+     +    L   +P NS  ++   +  AATG
Sbjct: 456 VFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVKP-NSVTFIAALSACAATG 513



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 191/441 (43%), Gaps = 41/441 (9%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
           L +   +    G +  +   K++H  A+  G   +      L+  Y S     +A  +  
Sbjct: 298 LMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFS 357

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
               +  + W  +IS Y ++GF  +AL VY  M+   +  D+ T  S L AC  +  +D 
Sbjct: 358 RMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDV 417

Query: 194 GRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H    +      + V NAL+ MY K   +D A  +F  M E+D VSW++M      
Sbjct: 418 GIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSM------ 471

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                                       IAG C    +F+ +     R        +SV 
Sbjct: 472 ----------------------------IAGFCFNHRSFEALYYF--RYMLGHVKPNSVT 501

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            +  L AC+  GAL+ GKEIH   +R   G    V NAL+ +Y +C    +A+  F + +
Sbjct: 502 FIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHS 561

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           EK +++WN MLSG+      + +  LF +M   G  P+ VT  ++L  C+R   +  G E
Sbjct: 562 EKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWE 621

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQ 491
               +  +     +L  +  +V++ +R GK+ EA ++ + M  + D   + +L+ G  I 
Sbjct: 622 LFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIH 681

Query: 492 GE---GRVALKLFEEMNKNQI 509
                G +A K+  E+  N +
Sbjct: 682 RHVELGELAAKVILELEPNDV 702



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 155/381 (40%), Gaps = 49/381 (12%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRI-TAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           +  +   G   KA E +  + +   +  DV + S      C G++     G +LH  A  
Sbjct: 371 ISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDV---GIKLHELAQN 427

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            G  +  V+   L+  YA     + A  + +    +  + W+ +I+ +  +    EAL  
Sbjct: 428 KGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYY 487

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-FVHNALVSMYGK 221
           ++ M    ++ ++ T+ + L AC     +  G+ +H+ +  C   S  +V NAL+ +Y K
Sbjct: 488 FRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVK 546

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            GQ   A   F    E+D VSWN M+S + + GL   A  LF +M E G   + +T+  +
Sbjct: 547 CGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVAL 606

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
              C R G      EL   M  + + + ++       AC                     
Sbjct: 607 LCACSRAGMVIQGWELFHMMTEKFSIVPNLKHY----AC--------------------- 641

Query: 342 GEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSG---YTHLDCAEESAF 397
                    ++ + SR   L  AY L  +M  +     W ++L+G   + H++  E +A 
Sbjct: 642 ---------MVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAK 692

Query: 398 LFREMFRSGVEPNYVTIASIL 418
           +  E+     EPN V    +L
Sbjct: 693 VILEL-----EPNDVAYHVLL 708


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 193/624 (30%), Positives = 323/624 (51%), Gaps = 48/624 (7%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+ +H  AI  GL+ +  +   L+  Y   +   +A  +      R  + WN +++ Y  
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 153 DGFYAEALC--VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS- 208
            G Y  A+   +  QMQ  R+R +  T  ++L    +   +  G  VH+ CI AC   + 
Sbjct: 89  HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148

Query: 209 ---------LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
                    + +  AL+ MY K G +  ARR+FD M  R+ V+W+ +I  +       +A
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
           F LF  M  +G+                                   +L   +    L A
Sbjct: 209 FLLFKAMLAQGL----------------------------------CFLSPTSIASALRA 234

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +  L++G+++H    +          N+L++MY++   +  A  LF   A K  +++
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 294

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           ++++SGY     AEE+  +F++M    VEP+  T+ S++P C+ +A LQHG+  H  ++ 
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
           R + +E   + N+L++MYA+ G++  ++ VF++M  RD V++ ++IAGYGI G G+ A  
Sbjct: 355 RGLASE-TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           LF EMN     PD VT + +LSACSHSGLV+EG+  F  M   YG+ P++EH+ CMVDL 
Sbjct: 414 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLL 473

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
            R G L++A E I  MP      +W  LLGAC++++N  +G+  +  + E  PE +G +V
Sbjct: 474 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 533

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++N+Y+A G +D+ A+VR   +  G +K PGC+W++       F+  D S+ Q+ EIY 
Sbjct: 534 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 593

Query: 680 LLGGLTELMKDAGYVVKEEFCSEE 703
            L  +   +K  GY     F  ++
Sbjct: 594 ELDNILVGIKKLGYQPDTSFVLQD 617



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 221/458 (48%), Gaps = 55/458 (12%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQ 224
           M   R+  +N+T+P  LKAC  + D   GR +H   I A  +  LFV  AL+ MY K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  A  +F  M  RD V+WN M++ YA  G++  A    + MQ +               
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQ--------------- 105

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                        + R+R   + L ++  ++     +  GAL  G  +H   +R C    
Sbjct: 106 -------------MHRLRPNASTLVALLPLL-----AQQGALAQGTSVHAYCIRACLHPN 147

Query: 345 ENVRN----------ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            N ++          AL+ MY++C  L +A  +F     ++ +TW++++ G+       +
Sbjct: 148 RNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQ 207

Query: 395 SAFLFREMFRSG---VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
           +  LF+ M   G   + P   +IAS L  CA + +L+ G++ H  +L ++  +  L   N
Sbjct: 208 AFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHA-LLAKSGVHADLTAGN 264

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL+ MYA++G + +A ++FD M+ +D V+Y++L++GY   G    A  +F++M    ++P
Sbjct: 265 SLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEP 324

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D  TMV+++ ACSH   +  G+     +  I G+  +      ++D+Y + G ++ ++++
Sbjct: 325 DAATMVSLIPACSHLAALQHGRCSHGSVI-IRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
              MP     + W T++    IH   G+G+ A    LE
Sbjct: 384 FNMMPSRDIVS-WNTMIAGYGIH---GLGKEATALFLE 417



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 5/217 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S A  +  C  +  L  G+QLHA     G+  +      L++ YA   L + A  L +  
Sbjct: 227 SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 286

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            ++  + ++ L+S YV++G   EA  V+K+MQ+  +  D  T  S++ AC  +  +  GR
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346

Query: 196 VVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
             H  +       E S+   NAL+ MY K G++D++R++F+ M  RD VSWNTMI+ Y  
Sbjct: 347 CSHGSVIIRGLASETSIC--NALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGI 404

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            GL KEA  LF+EM   G   + +T+  +   C  +G
Sbjct: 405 HGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 441


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  338 bits (866), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 188/543 (34%), Positives = 291/543 (53%), Gaps = 39/543 (7%)

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           PWN  +    +   + +AL +Y QM     R + FT+P  LK+C  +     G   H  I
Sbjct: 7   PWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQI 66

Query: 202 DACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLE--RDAVSWNTMISAYASKGLWKE 258
                 +  FV   L+SMY K   VD AR++F++     +  V +N ++S Y S     +
Sbjct: 67  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSD 126

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  LF +M EEGV VN +T   +   C+   N                            
Sbjct: 127 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPIN---------------------------- 158

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
                  L+LG  +H S ++  +    +V N  ITMY +C  + +A  LF     K +I+
Sbjct: 159 -------LELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLIS 211

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M+SGY     A     L+R M  +GV P+ VT+  +L  CA +     G E   + +
Sbjct: 212 WNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVE-FKM 270

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           + + F  +  L N+L+ MYAR G + +A++VFD M  R  V++T++I GYG+ G G +A+
Sbjct: 271 QASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAV 330

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LF+EM ++ I+PD    V VLSACSH+GL  +G + F+ M   Y + P  EH++CMVDL
Sbjct: 331 QLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDL 390

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L +A+ +I  MP  P  A+W  LLGAC+IH+N  + E A E+++E  PEN GYY
Sbjct: 391 LGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYY 450

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+Y+       + ++R  M++  ++K PGC++V+      PF+V D +++Q+ EIY
Sbjct: 451 VLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIY 510

Query: 679 PLL 681
            +L
Sbjct: 511 RVL 513



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 206/450 (45%), Gaps = 41/450 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C  +     G Q H     +G    P +   L++ Y   SL +NA  + E +
Sbjct: 42  TFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEEN 101

Query: 136 --NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             + +  + +N L+S YV +   ++A+ +++QM    +  ++ T   ++ AC   ++++ 
Sbjct: 102 FHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLEL 161

Query: 194 GRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H S +    +  + V N  ++MY K G V+ A++LFD+M  +  +SWN M+S YA 
Sbjct: 162 GSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQ 221

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            GL     +L+  M   GV                                   + D V 
Sbjct: 222 NGLATNVLELYRNMDMNGV-----------------------------------HPDPVT 246

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            V  L +C+++GA  +G E+        +     + NALI MY+RC +L  A  +F    
Sbjct: 247 LVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP 306

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           E+++++W +++ GY      E +  LF+EM RSG+EP+      +L  C+       G E
Sbjct: 307 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE 366

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQ 491
           +   + R          ++ +V++  R+G++ EA+++ + M  + D   + +L+    I 
Sbjct: 367 YFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH 426

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
               +A   FE +   +++P+++    +LS
Sbjct: 427 KNVELAELAFERV--IELEPENIGYYVLLS 454


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 193/624 (30%), Positives = 323/624 (51%), Gaps = 48/624 (7%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+ +H  AI  GL+ +  +   L+  Y   +   +A  +      R  + WN +++ Y  
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 153 DGFYAEALC--VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS- 208
            G Y  A+   +  QMQ  R+R +  T  ++L    +   +  G  VH+ CI AC   + 
Sbjct: 89  HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148

Query: 209 ---------LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
                    + +  AL+ MY K G +  ARR+FD M  R+ V+W+ +I  +       +A
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
           F LF  M  +G+                                   +L   +    L A
Sbjct: 209 FLLFKAMLAQGL----------------------------------CFLSPTSIASALRA 234

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +  L++G+++H    +          N+L++MY++   +  A  LF   A K  +++
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 294

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           ++++SGY     AEE+  +F++M    VEP+  T+ S++P C+ +A LQHG+  H  ++ 
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
           R + +E   + N+L++MYA+ G++  ++ VF++M  RD V++ ++IAGYGI G G+ A  
Sbjct: 355 RGLASE-TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           LF EMN     PD VT + +LSACSHSGLV+EG+  F  M   YG+ P++EH+ CMVDL 
Sbjct: 414 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLL 473

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
            R G L++A E I  MP      +W  LLGAC++++N  +G+  +  + E  PE +G +V
Sbjct: 474 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 533

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++N+Y+A G +D+ A+VR   +  G +K PGC+W++       F+  D S+ Q+ EIY 
Sbjct: 534 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 593

Query: 680 LLGGLTELMKDAGYVVKEEFCSEE 703
            L  +   +K  GY     F  ++
Sbjct: 594 ELDNILVGIKKLGYQPDTSFVLQD 617



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 221/458 (48%), Gaps = 55/458 (12%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQ 224
           M   R+  +N+T+P  LKAC  + D   GR +H   I A  +  LFV  AL+ MY K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  A  +F  M  RD V+WN M++ YA  G++  A    + MQ +               
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQ--------------- 105

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                        + R+R   + L ++  ++     +  GAL  G  +H   +R C    
Sbjct: 106 -------------MHRLRPNASTLVALLPLL-----AQQGALAQGTSVHAYCIRACLHPN 147

Query: 345 ENVRN----------ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            N ++          AL+ MY++C  L +A  +F     ++ +TW++++ G+       +
Sbjct: 148 RNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQ 207

Query: 395 SAFLFREMFRSG---VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
           +  LF+ M   G   + P   +IAS L  CA + +L+ G++ H  +L ++  +  L   N
Sbjct: 208 AFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHA-LLAKSGVHADLTAGN 264

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL+ MYA++G + +A ++FD M+ +D V+Y++L++GY   G    A  +F++M    ++P
Sbjct: 265 SLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEP 324

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D  TMV+++ ACSH   +  G+     +  I G+  +      ++D+Y + G ++ ++++
Sbjct: 325 DAATMVSLIPACSHLAALQHGRCSHGSVI-IRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
              MP     + W T++    IH   G+G+ A    LE
Sbjct: 384 FNMMPSRDIVS-WNTMIAGYGIH---GLGKEATALFLE 417



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 1/215 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S A  +  C  +  L  G+QLHA     G+  +      L++ YA   L + A  L +  
Sbjct: 227 SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 286

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            ++  + ++ L+S YV++G   EA  V+K+MQ+  +  D  T  S++ AC  +  +  GR
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
             H S I         + NAL+ MY K G++D++R++F+ M  RD VSWNTMI+ Y   G
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 406

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           L KEA  LF+EM   G   + +T+  +   C  +G
Sbjct: 407 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 441


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 303/558 (54%), Gaps = 28/558 (5%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + WN L+S Y ++G+  EA  V+  M  +    ++ ++  +L A      V  GR+  +C
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAY-----VHNGRIEEAC 193

Query: 201 I--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
           +  ++  +W L   N L+  + +  ++  AR LFDKM  RDA+SWNTMIS YA  G   +
Sbjct: 194 LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQ 253

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIG 316
           A +LF    +E    +V TW  +  G ++ G           M  + + +Y   +A  + 
Sbjct: 254 ARRLF----DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYV- 308

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
                    + + +E+  S        +    N +IT Y +  D+  A   F M  ++  
Sbjct: 309 -----QTKKMDIARELFESMPCRNISSW----NTMITGYGQIGDIAQARKFFDMMPQRDC 359

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W ++++GY      EE+  +F E+ + G   N  T    L  CA +A L+ GK+ H  
Sbjct: 360 VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQ 419

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            ++   +     + N+L+ MY + G + EA   F+ +  +D V++ +++AGY   G GR 
Sbjct: 420 AVKMG-YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQ 478

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           AL +FE M    +KPD +TMV VLSACSH+GL+  G + F  MT  YG+ P  +H+ CM+
Sbjct: 479 ALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMI 538

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GRAG L +A+++I  MP+ P +A W  LLGA +IH NT +GE AAE + +  P+NSG
Sbjct: 539 DLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSG 598

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YVL++N+YAA+G W    K+R+ MRD+GV+K+PG +WV+  N    F V D S+ + + 
Sbjct: 599 MYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKER 658

Query: 677 IYPLLGGLTELMKDAGYV 694
           IY  L  L   M++ GYV
Sbjct: 659 IYAYLEELDLKMREEGYV 676



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 32/216 (14%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS----------------- 148
           EKN V    ++  Y      + A  L E+   R    WN +I+                 
Sbjct: 294 EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDM 353

Query: 149 --------------LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
                          Y + G Y EAL ++ +++      +  T+   L  C ++  ++ G
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413

Query: 195 RVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + +H   +   +    FV NAL++MY K G +D A   F+ + E+D VSWNTM++ YA  
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           G  ++A  +F  M+  GV+ + IT   +   C  TG
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG 509



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 38/142 (26%)

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           ++GL+  G + F  M   Y + P  +H+ CM+DL GR   L +                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LLGA +IH NT +GE AA+   +  P+NSG                      + MRD+
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857

Query: 645 GVRKIPGCAWVDAGNVFSPFLV 666
           GV+K+PG +W +  N    F V
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSV 879



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 115/272 (42%), Gaps = 32/272 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G+  +A   F  I+    S +    +F   +  C  + AL  GKQ+H  A+ +G  
Sbjct: 369 YAQSGHYEEALNMFVEIKQDGESLNRA--TFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               +   L+  Y      + A    E    +  + WN +++ Y R GF  +AL V++ M
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM 486

Query: 167 QSRRIRGDNFTYPSVLKACGEM------------MDVDFGRVVHSCIDACHEWSLFVHNA 214
           ++  ++ D  T   VL AC               M  D+G +  S    C          
Sbjct: 487 KTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTC---------- 536

Query: 215 LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEG 270
           ++ + G+ G+++ A+ L   M  +  A SW  ++ A   + +  L ++A ++  +M+ + 
Sbjct: 537 MIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQN 596

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
             + V+  N  A     +G +    ++ S+MR
Sbjct: 597 SGMYVLLSNLYAA----SGRWVDADKMRSKMR 624



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 119/292 (40%), Gaps = 48/292 (16%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N  I+ + R      A  +F     +S +++N+M+SGY        +  LF +M      
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM------ 106

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P     +  + L   V N + G     + L   M  + ++ WNSL+  YA++G V EA+ 
Sbjct: 107 PERDLFSWNVMLTGYVRNCRLGDARRLFDL---MPEKDVVSWNSLLSGYAQNGYVDEARE 163

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE------------------------- 503
           VFD M  ++ +++  L+A Y   G    A  LFE                          
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 504 ---MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
               +K  ++ D ++   ++S  +  G + + ++ F+  +    +F     +  MV  Y 
Sbjct: 224 RWLFDKMPVR-DAISWNTMISGYAQGGGLSQARRLFDE-SPTRDVFT----WTAMVSGYV 277

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           + G+L++AK    +MP     +  A + G  Q  +        A +L E+ P
Sbjct: 278 QNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD-----IARELFESMP 324



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           +L WN  +  + R+G    A  VF+ M RR  V+Y ++I+GY    +  +A  LF++M +
Sbjct: 49  ILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE 108

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             +   +V +   +  C     + + ++ F+ M         +  +  ++  Y + G ++
Sbjct: 109 RDLFSWNVMLTGYVRNCR----LGDARRLFDLMPE-----KDVVSWNSLLSGYAQNGYVD 159

Query: 567 KAKEIITKMPYTPTSAMWATLLGA 590
           +A+E+   MP    S  W  LL A
Sbjct: 160 EAREVFDNMP-EKNSISWNGLLAA 182


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 303/558 (54%), Gaps = 28/558 (5%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + WN L+S Y ++G+  EA  V+  M  +    ++ ++  +L A      V  GR+  +C
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAY-----VHNGRIEEAC 193

Query: 201 I--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
           +  ++  +W L   N L+  + +  ++  AR LFDKM  RDA+SWNTMIS YA  G   +
Sbjct: 194 LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQ 253

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIG 316
           A +LF    +E    +V TW  +  G ++ G           M  + + +Y   +A  + 
Sbjct: 254 ARRLF----DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYV- 308

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
                    + + +E+  S        +    N +IT Y +  D+  A   F M  ++  
Sbjct: 309 -----QTKKMDIARELFESMPCRNISSW----NTMITGYGQIGDIAQARKFFDMMPQRDC 359

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W ++++GY      EE+  +F E+ + G   N  T    L  CA +A L+ GK+ H  
Sbjct: 360 VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQ 419

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            ++   +     + N+L+ MY + G + EA   F+ +  +D V++ +++AGY   G GR 
Sbjct: 420 AVKMG-YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQ 478

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           AL +FE M    +KPD +TMV VLSACSH+GL+  G + F  MT  YG+ P  +H+ CM+
Sbjct: 479 ALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMI 538

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GRAG L +A+++I  MP+ P +A W  LLGA +IH NT +GE AAE + +  P+NSG
Sbjct: 539 DLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSG 598

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YVL++N+YAA+G W    K+R+ MRD+GV+K+PG +WV+  N    F V D S+ + + 
Sbjct: 599 MYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKER 658

Query: 677 IYPLLGGLTELMKDAGYV 694
           IY  L  L   M++ GYV
Sbjct: 659 IYAYLEELDLKMREEGYV 676



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 32/216 (14%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS----------------- 148
           EKN V    ++  Y      + A  L E+   R    WN +I+                 
Sbjct: 294 EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDM 353

Query: 149 --------------LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
                          Y + G Y EAL ++ +++      +  T+   L  C ++  ++ G
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413

Query: 195 RVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + +H   +   +    FV NAL++MY K G +D A   F+ + E+D VSWNTM++ YA  
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           G  ++A  +F  M+  GV+ + IT   +   C  TG
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG 509



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 115/272 (42%), Gaps = 32/272 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G+  +A   F  I+    S +    +F   +  C  + AL  GKQ+H  A+ +G  
Sbjct: 369 YAQSGHYEEALNMFVEIKQDGESLNRA--TFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               +   L+  Y      + A    E    +  + WN +++ Y R GF  +AL V++ M
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM 486

Query: 167 QSRRIRGDNFTYPSVLKACGEM------------MDVDFGRVVHSCIDACHEWSLFVHNA 214
           ++  ++ D  T   VL AC               M  D+G +  S    C          
Sbjct: 487 KTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTC---------- 536

Query: 215 LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEG 270
           ++ + G+ G+++ A+ L   M  +  A SW  ++ A   + +  L ++A ++  +M+ + 
Sbjct: 537 MIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQN 596

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
             + V+  N  A     +G +    ++ S+MR
Sbjct: 597 SGMYVLLSNLYAA----SGRWVDADKMRSKMR 624



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 119/292 (40%), Gaps = 48/292 (16%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N  I+ + R      A  +F     +S +++N+M+SGY        +  LF +M      
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM------ 106

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P     +  + L   V N + G     + L   M  + ++ WNSL+  YA++G V EA+ 
Sbjct: 107 PERDLFSWNVMLTGYVRNCRLGDARRLFDL---MPEKDVVSWNSLLSGYAQNGYVDEARE 163

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE------------------------- 503
           VFD M  ++ +++  L+A Y   G    A  LFE                          
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 504 ---MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
               +K  ++ D ++   ++S  +  G + + ++ F+  +    +F     +  MV  Y 
Sbjct: 224 RWLFDKMPVR-DAISWNTMISGYAQGGGLSQARRLFDE-SPTRDVFT----WTAMVSGYV 277

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           + G+L++AK    +MP     +  A + G  Q  +        A +L E+ P
Sbjct: 278 QNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD-----IARELFESMP 324



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           +L WN  +  + R+G    A  VF+ M RR  V+Y ++I+GY    +  +A  LF++M +
Sbjct: 49  ILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE 108

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             +   +V +   +  C     + + ++ F+ M         +  +  ++  Y + G ++
Sbjct: 109 RDLFSWNVMLTGYVRNCR----LGDARRLFDLMPE-----KDVVSWNSLLSGYAQNGYVD 159

Query: 567 KAKEIITKMPYTPTSAMWATLLGA 590
           +A+E+   MP    S  W  LL A
Sbjct: 160 EAREVFDNMP-EKNSISWNGLLAA 182


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 197/610 (32%), Positives = 327/610 (53%), Gaps = 48/610 (7%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP----WNLLISLY 150
           Q++A  +  GL+    L+ KLV   ++    + A  L +    ++P P    WN ++  Y
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFD----KFPDPDVFLWNAIVRCY 148

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSL 209
            R GF+  A+ +Y +MQ   +  D F++P VLKAC  +  ++ GR VH  I     E  +
Sbjct: 149 SRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDV 208

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           FV N LV++Y K G++  A  +F ++++R                               
Sbjct: 209 FVQNGLVALYAKCGEIVRANAVFGRLVDR------------------------------- 237

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
                +++W +I  G  + G     L + S MR      D +A V  L A + V  L+ G
Sbjct: 238 ----TIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHG 293

Query: 330 KEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           K IHG  ++ G   E++ +  +L ++Y++C  +  A + F      S+I WN+M+SGY  
Sbjct: 294 KSIHGCVIKMGLECEFD-LLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVK 352

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
              AEE+  LFR M    + P+ +T+ S +  CA++ +L+  +    YI   + F   ++
Sbjct: 353 NGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYI-SMSEFRNDVI 411

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           +  SL++ YA+ G V  A+ VFD +  +D V +++++ GYG+ G+GR ++ LF  M +  
Sbjct: 412 VNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAG 471

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + P+ VT V +L+AC +SGLV EG   F RM   YGI P+ +H+AC+VDL GRAG L++A
Sbjct: 472 VSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRA 530

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
              +  MP  P  ++W  LL AC+IHR+  +GE+AAE+L    P N+G+YV ++N+YA++
Sbjct: 531 YNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASS 590

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
             WD +AKVR  MR+ G+ K  G + ++       F   D ++ +++EI+  +  L   +
Sbjct: 591 CLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRL 650

Query: 689 KDAGYVVKEE 698
           K+AG+V   E
Sbjct: 651 KEAGFVPHTE 660



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 189/429 (44%), Gaps = 55/429 (12%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++  G    A E + R+++   S D    SF  ++  C  + AL  G+++H      G E
Sbjct: 148 YSRHGFFGHAIEMYARMQVACVSPDGF--SFPCVLKACSALPALEMGRRVHGQIFRHGFE 205

Query: 107 KNPVLVPKLVTFYASFS--LYNNACF--LVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            +  +   LV  YA     +  NA F  LV+    R  + W  +IS Y ++G   EAL +
Sbjct: 206 SDVFVQNGLVALYAKCGEIVRANAVFGRLVD----RTIVSWTSIISGYAQNGQPIEALRI 261

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA----CHEWSLFVHNALVSM 218
           + +M+   +R D     SVL+A  ++ D++ G+ +H C+      C E+ L +  +L S+
Sbjct: 262 FSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEC-EFDLLI--SLTSL 318

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G V VAR  F+++     + WN MIS Y   G  +EA +LF  M+ + +  + IT 
Sbjct: 319 YAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITV 378

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
            +                                    + AC+ +G+L+L + +      
Sbjct: 379 TS-----------------------------------SIAACAQIGSLELARWMDEYISM 403

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             +     V  +LI  Y++C  +  A  +F    +K ++ W++M+ GY       ES  L
Sbjct: 404 SEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIIL 463

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKE-FHCYILRRAMFNEHLLLWNSLVEMY 457
           F  M ++GV PN VT   +L  C     ++ G + FH   +R          +  +V++ 
Sbjct: 464 FHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFH--RMRDYGIEPRHQHYACVVDLL 521

Query: 458 ARSGKVPEA 466
            R+G +  A
Sbjct: 522 GRAGHLDRA 530



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 134/266 (50%), Gaps = 15/266 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G   +A   F+ +R T    D +  +   ++     V+ L  GK +H C I +
Sbjct: 246 ISGYAQNGQPIEALRIFSEMRKTNVRPDWI--ALVSVLRAYTDVEDLEHGKSIHGCVIKM 303

Query: 104 GLEKNPVLVPKLVTFYASFS------LYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
           GLE    L+  L + YA         L+ N    VEN ++ +   WN +IS YV++G+  
Sbjct: 304 GLECEFDLLISLTSLYAKCGHVMVARLFFNQ---VENPSLIF---WNAMISGYVKNGYAE 357

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALV 216
           EA+ +++ M+S+ IR D+ T  S + AC ++  ++  R +   I        + V+ +L+
Sbjct: 358 EAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLI 417

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
             Y K G VD+AR +FD++ ++D V W+ M+  Y   G  +E+  LF  M++ GV  N +
Sbjct: 418 DTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDV 477

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMR 302
           T+  +   C  +G  +   +L  RMR
Sbjct: 478 TFVGLLTACKNSGLVEEGWDLFHRMR 503


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 194/582 (33%), Positives = 318/582 (54%), Gaps = 51/582 (8%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP-LP 142
           CG +  L+ G  LH   +  G+   P +V  L      FS+Y   C   E++ I +P LP
Sbjct: 225 CGVLGELSVGTCLHGFGVKAGVGHCPSVVSSL------FSMYTK-CDSTEDARILFPELP 277

Query: 143 ------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
                 W  LI  Y R G   +A+ ++  M+   ++ D      +L   G    V  G+ 
Sbjct: 278 EKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKT 337

Query: 197 VHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            H+ I       S+ + NAL+SMY K  QVD+A  +F  + +RD  SW++M+ AY   GL
Sbjct: 338 FHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGL 397

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATV 314
             +  +L+ EMQ                                  R ++ +  D+ + +
Sbjct: 398 DLKCLELYREMQ---------------------------------FRDKDEFEYDTNSLI 424

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + +CS +G L+LG+  H  +++   GE  +V NALI+MY RC +   A  +F M   K
Sbjct: 425 SIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTK 484

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            ++TW++++S Y+HL  ++++  L+ +M   GV+PN  T+ S++  CA +A L+HG+  H
Sbjct: 485 DVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIH 544

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            ++ +       L +  +LV+MY + G++  A+ +FD M  RD VT+  +I+GYG+ GE 
Sbjct: 545 SHV-KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEA 603

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             ALKLF  M +  +KP+ +T +A+LSAC H+GLV +G++ F RM   Y + P L+H+AC
Sbjct: 604 IQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYAC 662

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL G++G L +A+++++ MP  P   +W TLLGAC++H N  +G   A+K   + PEN
Sbjct: 663 MVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPEN 722

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
            GYY+L++N Y +   W+++ K+R  M++ GV K  G + +D
Sbjct: 723 DGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTID 764



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 236/508 (46%), Gaps = 53/508 (10%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LHA A+  GL   P    KLV+ Y+S  L   A      S       WN L+    R   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215
           +A  L  +++M++   R   FT P V  A  E+  +  G  VH+            ++  
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHA------------YSVR 135

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
             +    G V VA               ++++  YA  G  ++A +LF EM E     +V
Sbjct: 136 FGLLEGDGSVAVA---------------SSLVYMYARCGSVRDAVRLFDEMPER----DV 176

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRM---------RTQETYLDSVATVIGLGACSHVGAL 326
           + W  +  GC+  G     L  L RM         R     ++S     GL AC  +G L
Sbjct: 177 VAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMES-----GLEACGVLGEL 231

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            +G  +HG  V+   G   +V ++L +MY++C     A ILF    EK +++W S++  Y
Sbjct: 232 SVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAY 291

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                AE++  LF  M  SG++P+ V I+ +L      A ++ GK FH  I+RR  F + 
Sbjct: 292 CRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRN-FGDS 350

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-- 504
           +L+ N+L+ MYA+  +V  A +VF ++ +RD  +++S++  Y   G     L+L+ EM  
Sbjct: 351 VLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQF 410

Query: 505 -NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRA 562
            +K++ + D  ++++++S+CS  G +  GQ       SI  +  +    A  ++ +YGR 
Sbjct: 411 RDKDEFEYDTNSLISIISSCSRLGRLRLGQSA--HCYSIKHLAGENSSVANALISMYGRC 468

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGA 590
           G  + A++I   M  T     W+ L+ +
Sbjct: 469 GNFDVARKIF-GMVKTKDVVTWSALISS 495



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 43/245 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C  + AL  G+ +H+    +GLE +  +   LV  Y        A  + ++ 
Sbjct: 523 TLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSM 582

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN++IS Y   G   +AL ++  M+   ++ ++ T+ ++L AC     VD GR
Sbjct: 583 LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGR 642

Query: 196 VVHSCIDACHEWSL---FVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
            + + ++   E+SL     H A +V + GK G +  A  +   M +E D   W T++ A 
Sbjct: 643 ELFTRME---EYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGAC 699

Query: 250 ---------------------------------YASKGLWKEAFQLFVEMQEEGVEVNVI 276
                                            Y S   W E  +L   M+  GVE + I
Sbjct: 700 KMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKS-I 758

Query: 277 TWNTI 281
            W+TI
Sbjct: 759 GWSTI 763


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 197/617 (31%), Positives = 324/617 (52%), Gaps = 14/617 (2%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L +G+     ++   L   P     ++ F+     +++A  + +    R    W L IS 
Sbjct: 26  LLRGRAARGGSLEARLATVPHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISG 85

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGRVVHSCI--DACHE 206
             R G YA+ +  + +M +      N F   +V++ C  M DV+ G+ VH  +  +  H 
Sbjct: 86  CARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVH- 144

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
             + + NA++ MY K GQ + ARR+F  M ERDAVSWN  I A    G    + QLF   
Sbjct: 145 LDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLF--- 201

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
            +E    +  +WNTI  G +R+G+    L  L RM       +             +   
Sbjct: 202 -DESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLP 260

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK----MTAEKSIITWNSM 382
            LG+++HG  +         VR++L+ MY +C  L  A  +F     +T + +   W++M
Sbjct: 261 DLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMN-FAWSTM 319

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++GY      EE+  LFR M R GV  +  T+ S+   CA V  ++ G++ H  +  +  
Sbjct: 320 VAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCV-EKLW 378

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           +     L +++V+MYA+ G + +A+S+FD    ++   +TS++  Y   G+GR+A++LFE
Sbjct: 379 YKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFE 438

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M   ++ P+ +T+V VLSACSH GLV EG+  F++M   YGI P +EH+ C+VDLYGR+
Sbjct: 439 RMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRS 498

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           GLL+KAK  I +      + +W TLL AC++H++    + A+EKL++    ++G YV+++
Sbjct: 499 GLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLS 558

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+YA    W    ++R  M++  VRK PG +W+   N    F+  D S+ Q+ EIY  L 
Sbjct: 559 NIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLE 618

Query: 683 GLTELMKDAGYVVKEEF 699
            L E +K+ GY  + + 
Sbjct: 619 KLVERLKEIGYTSRTDL 635



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/466 (24%), Positives = 198/466 (42%), Gaps = 75/466 (16%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACA 100
           T+   A RG  +    AF  +    A  +   ++F  A ++ CC  +  +  GK++H   
Sbjct: 82  TISGCARRGRYADGMRAFAEM---LAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWM 138

Query: 101 IALGLEKNPVLVPKLVTFYA---------------------SFSLYNNACF--------- 130
           +  G+  + VL   ++  YA                     S+++   AC          
Sbjct: 139 LRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSM 198

Query: 131 -LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            L + S +R    WN +IS  +R G  A+AL   ++M    +  +++TY +     G ++
Sbjct: 199 QLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLL 258

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM--LERDA-VSWNT 245
             D GR +H   + A  E   FV ++L+ MY K G ++ A  +FD    L RD   +W+T
Sbjct: 259 LPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWST 318

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           M++ Y   G  +EA  LF  M  EGV  +  T  ++A                       
Sbjct: 319 MVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVA----------------------- 355

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
                        AC++VG ++ G+++HG   +  Y     + +A++ MY++C +L  A 
Sbjct: 356 ------------AACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDAR 403

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F     K+I  W SML  Y        +  LF  M    + PN +T+  +L  C+ V 
Sbjct: 404 SIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVG 463

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            +  G+ +   +         +  +N +V++Y RSG + +AK+  +
Sbjct: 464 LVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIE 509



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 45/265 (16%)

Query: 47  FAGRGNLSKAFEAFTR-IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           +   G   +A + F R +R   A+    L S A     C  V  + QG+Q+H C   L  
Sbjct: 323 YVQNGREEEALDLFRRMLREGVAADRFTLTSVA---AACANVGMVEQGRQVHGCVEKLWY 379

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           + +  L   +V  YA      +A  + + +  +    W  ++  Y   G    A+ ++++
Sbjct: 380 KLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFER 439

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW----SLFVHNALVSMYGK 221
           M + ++  +  T   VL AC  +  V  G +    +    E+    S+  +N +V +YG+
Sbjct: 440 MTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQ--EEYGIVPSIEHYNCIVDLYGR 497

Query: 222 FGQVDVARRLFDK-MLERDAVSWNTMISA------------------------------- 249
            G +D A+   ++  +  +A+ W T++SA                               
Sbjct: 498 SGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVML 557

Query: 250 ---YASKGLWKEAFQLFVEMQEEGV 271
              YA+   W + F+L V MQE  V
Sbjct: 558 SNIYATNNKWHDTFELRVSMQERKV 582


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 198/595 (33%), Positives = 311/595 (52%), Gaps = 37/595 (6%)

Query: 100 AIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159
           +I  G   +  +   +V  Y  FS    A  + +    R  + WN ++S  V++  + EA
Sbjct: 132 SIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEA 191

Query: 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSM 218
           + ++  M    I  D+ T  +VL    E+ D+  G  +    +        +V   L  +
Sbjct: 192 ILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACL 251

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G+++ AR LF ++ + D VS+N MIS Y      + + +LF E+   G +VN    
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVN---- 307

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                    + +  G++ +                          G L L + IHG   +
Sbjct: 308 ---------SSSIVGLIPVFFPF----------------------GHLHLTRCIHGFCTK 336

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
                  +V  AL T+YSR  ++  A +LF  ++EKS+ +WN+M+SGY      E++  L
Sbjct: 337 SGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISL 396

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F+EM +  V PN VT+ SIL  CA++  L  GK  H  I R + F  ++ +  +L++MYA
Sbjct: 397 FQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRES-FESNIFVSTALIDMYA 455

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           + G + EA+ +F +M  ++ VT+ ++I+GYG+ G G  AL LF EM  +++ P  VT ++
Sbjct: 456 KCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLS 515

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           VL ACSH+GLV EG + F  M   +G  P  EH+ACMVDL GRAG L+KA + I KMP  
Sbjct: 516 VLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVE 575

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638
           P   +W  LLGAC IH++  +   A++KL E  P+N GYYVL++N+Y+A   + + A VR
Sbjct: 576 PGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVR 635

Query: 639 TCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
             ++   + K PGC  ++  N    F   D S+ QA  IY +L  LT  M++AG+
Sbjct: 636 GVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGF 690



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 148/579 (25%), Positives = 261/579 (45%), Gaps = 65/579 (11%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPW 143
           +V  L Q  Q HA  I  GL  + V V KL    +     + A  L   S I  P    +
Sbjct: 19  RVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLF--STIPNPDLFLY 76

Query: 144 NLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           N+LI  +  +   + A+ +Y  + +S  +  DNFTY  V+             +    I 
Sbjct: 77  NVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISG--ASSLGLGLLLHAHSIV 134

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           A     LFV +A+V+ Y KF +V  AR++FD MLERD V WNTM+S       + EA  +
Sbjct: 135 AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILI 194

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F +M + G+  +  T   +           GV EL                 + LG    
Sbjct: 195 FGDMVKGGIGFDSTTVAAV---------LPGVAELQD---------------LALGMGIQ 230

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
             A+K+G   H   + G           L  +YS+C ++  A +LF    +  ++++N+M
Sbjct: 231 CLAMKVGFHSHAYVITG-----------LACLYSKCGEIETARLLFGQIGQPDLVSYNAM 279

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SGYT  +  E S  LF+E+  SG + N  +I  ++P+     +L   +  H +  +  +
Sbjct: 280 ISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGV 339

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            +    +  +L  +Y+R  ++  A+ +FD  S +   ++ ++I+GY   G    A+ LF+
Sbjct: 340 VSN-SSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQ 398

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ---KQFERMTSIYGIFPQLEHFACMVDLY 559
           EM K +++P+ VT+ ++LSAC+  G +  G+       R +    IF        ++D+Y
Sbjct: 399 EMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVS----TALIDMY 454

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA---EKLLETRPENSG 616
            + G + +A+ + + MP    +  W  ++    +H   G G  A     ++L +R   +G
Sbjct: 455 AKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLH---GYGHEALNLFNEMLHSRVSPTG 510

Query: 617 YYVLIANMYAATGC-----WDKLAKVRTCMRDLGVRKIP 650
               ++ +YA +        D++   R+ + D G   +P
Sbjct: 511 -VTFLSVLYACSHAGLVREGDEI--FRSMVHDHGFEPLP 546



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 174/397 (43%), Gaps = 46/397 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++    +++ LA G  +   A+ +G   +  ++  L   Y+       A  L    
Sbjct: 209 TVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQI 268

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + +N +IS Y  +     ++ ++K++     + ++ +   ++        +   R
Sbjct: 269 GQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTR 328

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  C  +    +  V  AL ++Y +  +++ AR LFD+  E+   SWN MIS YA  G
Sbjct: 329 CIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNG 388

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L ++A  LF EMQ+  V  N +T  +I                                 
Sbjct: 389 LTEKAISLFQEMQKCEVRPNPVTVTSI--------------------------------- 415

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +GAL LGK +H    R  +     V  ALI MY++C  +  A  LF M  EK
Sbjct: 416 --LSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK 473

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           + +TWN+M+SGY       E+  LF EM  S V P  VT  S+L  C+    ++ G E  
Sbjct: 474 NAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDE-- 531

Query: 435 CYILRRAMFNEHLL-----LWNSLVEMYARSGKVPEA 466
              + R+M ++H        +  +V++  R+G + +A
Sbjct: 532 ---IFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKA 565



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 98/247 (39%), Gaps = 8/247 (3%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G   KA   F  ++      + V  +   I+  C ++ AL+ GK +H      
Sbjct: 381 ISGYAQNGLTEKAISLFQEMQKCEVRPNPV--TVTSILSACAQLGALSLGKWVHDLINRE 438

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
             E N  +   L+  YA       A  L      +  + WN +IS Y   G+  EAL ++
Sbjct: 439 SFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLF 498

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNA-LVSMYGK 221
            +M   R+     T+ SVL AC     V  G  +   +   H +  L  H A +V + G+
Sbjct: 499 NEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGR 558

Query: 222 FGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVIT 277
            G +D A     KM +E     W  ++ A   +    L + A     E+  + V   V+ 
Sbjct: 559 AGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLL 618

Query: 278 WNTIAGG 284
            N  + G
Sbjct: 619 SNIYSAG 625


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 201/610 (32%), Positives = 313/610 (51%), Gaps = 39/610 (6%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYA--SFSLYNNACFLVENSNIRYPLPWNLL 146
           ++++ KQ HA  +   L  NP+   KL++F A       N A  L        P   N +
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACH 205
           I  Y R     EA+ +Y  M  R +  DN+TYP VL AC  +  V  GR  H   +    
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF 142

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
              LFV NAL+  Y   G    A  +FD+   RD V+WN MI+A+ +KGL ++AF L  E
Sbjct: 143 GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDE 202

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           M +                             L  +R      D V  V  + AC+ +G 
Sbjct: 203 MTK-----------------------------LDNLRP-----DEVTMVSLVPACAQLGN 228

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           L+ GK +H  +      E   V NA++ MY +C D+  A  +F    EK +++W SMLSG
Sbjct: 229 LERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSG 288

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
                  +E+  LF++M  + +E + +T+  +L  CA+   L  GK  H  ++ +   N 
Sbjct: 289 LAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIH-LLIDKFEINC 347

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
            L+L  +LV+MYA+ G +  A  VF  M  R+  T+ +LI G  + G G  A+ LF++M 
Sbjct: 348 DLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQME 407

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
            +++ PD VT +A+L ACSH+GLV EG   F+ M + + I P++EH+ C+VDL  RA  +
Sbjct: 408 HDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKV 467

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
           + A   I  MP    S +WATLLGAC+   +  + E    +++E  P++ G YV+++N+Y
Sbjct: 468 DDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLY 527

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           A    WD   K+R  M++ G+ K PGC+W++   +   F+  D S++Q ++IY ++  +T
Sbjct: 528 AGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMT 587

Query: 686 ELMK-DAGYV 694
             +  D G+V
Sbjct: 588 RRVNLDGGHV 597



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 209/449 (46%), Gaps = 40/449 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C ++ A+  G++ H   +  G   +  ++  L+ FY +   +  AC + + S
Sbjct: 113 TYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDES 172

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFG 194
            +R  + WN++I+ ++  G   +A  +  +M     +R D  T  S++ AC ++ +++ G
Sbjct: 173 TVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + +HS   +   + +L V+NA++ MY K   ++ A+ +F+++ E+D +SW +M+S  A  
Sbjct: 233 KFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKS 292

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G ++EA  LF +MQ   +E++ IT               GV                   
Sbjct: 293 GYFQEALALFQKMQLNKIELDEIT-------------LVGV------------------- 320

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC+  GAL  GK IH    +        +  AL+ MY++C  +  A  +F+    
Sbjct: 321 ---LSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRV 377

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +++ TWN+++ G       E++  LF +M    + P+ VT  ++L  C+    +  G   
Sbjct: 378 RNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAM 437

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQG 492
              +  +      +  +  +V++  R+ KV +A +  + M  + + V + +L+      G
Sbjct: 438 FQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGG 497

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
              +A K+   +   +++PD      +LS
Sbjct: 498 HFDLAEKIGRRV--IELEPDSCGRYVMLS 524


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 198/625 (31%), Positives = 333/625 (53%), Gaps = 22/625 (3%)

Query: 79  HIIFCC-GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI 137
           H +F       +L   KQ+HA  +   L+++  L+ KLV   +S +L ++  + +   N+
Sbjct: 24  HTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVI--SSCALSSSLDYALSVFNL 81

Query: 138 RYPLPWNLLISLYVRDGFYAE----ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             P P   L + ++R+   +E     L VY++M+++ +  D F++P +LKA   +  +  
Sbjct: 82  -IPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVE 140

Query: 194 GRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H        +   FV   LV MY   G++  AR +FDKM  RD V+W+ MI  Y  
Sbjct: 141 GLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQ 200

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD--- 309
            GL+ +A  LF EM+   VE + +  +T+   C R GN      +   +      +D   
Sbjct: 201 SGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHL 260

Query: 310 SVATVIGLGACSHVG-ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
             A V    +C  +  AL L +++    +            A++T YS+   + +A  +F
Sbjct: 261 QSALVTMYASCGSMDLALNLFEKMTPKNLVA--------STAMVTGYSKLGQIENARSVF 312

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               +K ++ W++M+SGY   D  +E+  LF EM   G++P+ VT+ S++  CA +  L 
Sbjct: 313 NQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALD 372

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
             K  H ++ +   F   L + N+L+EMYA+ G +  A+ +FD M R++ +++T +I+ +
Sbjct: 373 QAKWIHLFVDKNG-FGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAF 431

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            + G+   AL+ F +M    I+P+ +T V VL ACSH+GLV EG+K F  M + + I P+
Sbjct: 432 AMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPK 491

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
             H+ CMVDL+GRA LL +A E++  MP  P   +W +L+ AC++H    +GE+AA++LL
Sbjct: 492 HVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLL 551

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P++ G +V ++N+YA    W+ + +VR  M+  G+ K  GC+  +  N    FLV D
Sbjct: 552 ELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVAD 611

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGY 693
            S+  A EIY  L  +   +K  GY
Sbjct: 612 RSHKHADEIYEKLYEVVSKLKLVGY 636



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 233/480 (48%), Gaps = 26/480 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L++ +      K    + R+R    + D    SF  ++    +VK+L +G ++H  A  L
Sbjct: 94  LRELSRSEEPEKTLLVYERMRTQGLAVDRF--SFPPLLKALSRVKSLVEGLEIHGLAAKL 151

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G + +P +   LV  YA+      A  + +    R  + W+++I  Y + G + +AL ++
Sbjct: 152 GFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLF 211

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV----HNALVSMY 219
           ++M++  +  D     +VL ACG   ++ +G+++H   D   E ++ V     +ALV+MY
Sbjct: 212 EEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIH---DFIMENNIVVDPHLQSALVTMY 268

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
              G +D+A  LF+KM  ++ V+   M++ Y+  G  + A  +F +M    V+ +++ W+
Sbjct: 269 ASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQM----VKKDLVCWS 324

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
            +  G   + + +  L L + M++     D V  +  + AC+H+GAL   K IH    + 
Sbjct: 325 AMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKN 384

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +G    + NALI MY++C  L  A  +F     K++I+W  M+S +     A  +   F
Sbjct: 385 GFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFF 444

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLV 454
            +M    +EPN +T   +L  C+    ++ G++     +  +M NEH +      +  +V
Sbjct: 445 HQMEDENIEPNGITFVGVLYACSHAGLVEEGRK-----IFYSMINEHNITPKHVHYGCMV 499

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEV-TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           +++ R+  + EA  + + M     V  + SL+A   + GE  + L  F      ++ PDH
Sbjct: 500 DLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGE--IELGEFAAKRLLELDPDH 557


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 218/649 (33%), Positives = 327/649 (50%), Gaps = 76/649 (11%)

Query: 57  FEAFTRIRITAASHDVVLD--SFAHIIFCCGKV----KALAQGKQLHACAIALGLEKNPV 110
           F  F   +++++   + LD  S    +F  G+V      +   + +H+  I   L  N  
Sbjct: 16  FRKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSS 75

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L  KL+  YAS     +A  + +    R  +  N++I  YV +GFY E + V+  M    
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +R D++T+P VLKAC     +  GR +H S        +LFV N LVSMYGK G +  AR
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            + D+M  R                                   +V++WN++  G  +  
Sbjct: 196 LVLDEMSRR-----------------------------------DVVSWNSLVVGYAQNQ 220

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
            F   LE+   M + +   D+      L A S+                      ENV  
Sbjct: 221 RFDDALEVCREMESVKISHDAGTMASLLPAVSNTTT-------------------ENV-- 259

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
               MY   KD+      FKM  +KS+++WN M+  Y       E+  L+  M   G EP
Sbjct: 260 ----MY--VKDM-----FFKM-GKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEP 307

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + V+I S+LP C   + L  GK+ H YI R+ +   +LLL N+L++MYA+ G + +A+ V
Sbjct: 308 DAVSITSVLPACGDTSALSLGKKIHGYIERKKLI-PNLLLENALIDMYAKCGCLEKARDV 366

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+ M  RD V++T++I+ YG  G G  A+ LF ++  + + PD +  V  L+ACSH+GL+
Sbjct: 367 FENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLL 426

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG+  F+ MT  Y I P+LEH ACMVDL GRAG + +A   I  M   P   +W  LLG
Sbjct: 427 EEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLG 486

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++H +T IG  AA+KL +  PE SGYYVL++N+YA  G W+++  +R  M+  G++K 
Sbjct: 487 ACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN 546

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
           PG + V+   +   FLV D S+ Q+ EIY  L  L + MK+ GYV   E
Sbjct: 547 PGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSE 595



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A E ++R+       D V  S   ++  CG   AL+ GK++H       L  N +L   
Sbjct: 292 EAVELYSRMEADGFEPDAV--SITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 349

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  YA       A  + EN   R  + W  +IS Y   G   +A+ ++ ++Q   +  D
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPD 409

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLF 232
           +  + + L AC     ++ GR     +   ++ +  + +   +V + G+ G+V  A R  
Sbjct: 410 SIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFI 469

Query: 233 DKM-LERDAVSWNTMISA 249
             M +E +   W  ++ A
Sbjct: 470 QDMSMEPNERVWGALLGA 487


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 194/582 (33%), Positives = 318/582 (54%), Gaps = 51/582 (8%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP-LP 142
           CG +  L+ G  LH   +  G+   P +V  L      FS+Y   C   E++ I +P LP
Sbjct: 225 CGVLGELSVGTCLHGFGVKAGVGHCPSVVSSL------FSMYTK-CDSTEDARILFPELP 277

Query: 143 ------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
                 W  LI  Y R G   +A+ ++  M+   ++ D      +L   G    V  G+ 
Sbjct: 278 EKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKT 337

Query: 197 VHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            H+ I       S+ + NAL+SMY K  QVD+A  +F  + +RD  SW++M+ AY   GL
Sbjct: 338 FHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGL 397

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATV 314
             +  +L+ EMQ                                  R ++ +  D+ + +
Sbjct: 398 DLKCLELYREMQ---------------------------------FRDKDEFEYDTNSLI 424

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + +CS +G L+LG+  H  +++   GE  +V NALI+MY RC +   A  +F M   K
Sbjct: 425 SIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTK 484

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            ++TW++++S Y+HL  ++++  L+ +M   GV+PN  T+ S++  CA +A L+HG+  H
Sbjct: 485 DVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIH 544

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            ++ +       L +  +LV+MY + G++  A+ +FD M  RD VT+  +I+GYG+ GE 
Sbjct: 545 SHV-KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEA 603

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             ALKLF  M +  +KP+ +T +A+LSAC H+GLV +G++ F RM   Y + P L+H+AC
Sbjct: 604 IQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYAC 662

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL G++G L +A+++++ MP  P   +W TLLGAC++H N  +G   A+K   + PEN
Sbjct: 663 MVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPEN 722

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
            GYY+L++N Y +   W+++ K+R  M++ GV K  G + +D
Sbjct: 723 DGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTID 764



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 236/508 (46%), Gaps = 53/508 (10%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LHA A+  GL   P    KLV+ Y+S  L   A      S       WN L+    R   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215
           +A  L  +++M++   R   FT P V  A  E+  +  G  VH+            ++  
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHA------------YSVR 135

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
             +    G V VA               ++++  YA  G  ++A +LF EM E     +V
Sbjct: 136 FGLLEGDGSVAVA---------------SSLVYMYARCGSVRDAVRLFDEMPER----DV 176

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRM---------RTQETYLDSVATVIGLGACSHVGAL 326
           + W  +  GC+  G     L  L RM         R     ++S     GL AC  +G L
Sbjct: 177 VAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMES-----GLEACGVLGEL 231

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            +G  +HG  V+   G   +V ++L +MY++C     A ILF    EK +++W S++  Y
Sbjct: 232 SVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAY 291

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                AE++  LF  M  SG++P+ V I+ +L      A ++ GK FH  I+RR  F + 
Sbjct: 292 CRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRN-FGDS 350

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-- 504
           +L+ N+L+ MYA+  +V  A +VF ++ +RD  +++S++  Y   G     L+L+ EM  
Sbjct: 351 VLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQF 410

Query: 505 -NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRA 562
            +K++ + D  ++++++S+CS  G +  GQ       SI  +  +    A  ++ +YGR 
Sbjct: 411 RDKDEFEYDTNSLISIISSCSRLGRLRLGQSA--HCYSIKHLAGENSSVANALISMYGRC 468

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGA 590
           G  + A++I   M  T     W+ L+ +
Sbjct: 469 GNFDVARKIF-GMVKTKDVVTWSALISS 495



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 43/245 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C  + AL  G+ +H+    +GLE +  +   LV  Y        A  + ++ 
Sbjct: 523 TLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSM 582

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN++IS Y   G   +AL ++  M+   ++ ++ T+ ++L AC     VD GR
Sbjct: 583 LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGR 642

Query: 196 VVHSCIDACHEWSL---FVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
            + + ++   E+SL     H A +V + GK G +  A  +   M +E D   W T++ A 
Sbjct: 643 ELFTRME---EYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGAC 699

Query: 250 ---------------------------------YASKGLWKEAFQLFVEMQEEGVEVNVI 276
                                            Y S   W E  +L   M+  GVE + I
Sbjct: 700 KMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKS-I 758

Query: 277 TWNTI 281
            W+TI
Sbjct: 759 GWSTI 763


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 289/524 (55%), Gaps = 7/524 (1%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y +++++C +   +  G+ VH  I  +     LF+ N L+ MY K   +  +++LFD+M 
Sbjct: 73  YSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMP 132

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           ERD  SWN +IS YA  GL +EA  LF +M E     +  +W  +  G +R       LE
Sbjct: 133 ERDLCSWNILISGYAKMGLLQEAKSLFDKMPER----DNFSWTAMISGYVRHDRPNEALE 188

Query: 297 LLSRMRTQETYLDSVATVIGLGACSH-VGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           L   M+  +    +  TV    A +  V  L++GKEIHG  +R      E V +AL  MY
Sbjct: 189 LFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMY 248

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
            +C  +  A  +F    ++ I+TW +M+  Y      +E   LF ++ RSG+ PN  T +
Sbjct: 249 GKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFS 308

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
            +L  CA   + + GK+ H Y + R  F+      ++LV MY++ G +  A+ VF    +
Sbjct: 309 GVLNACANQTSEELGKKVHGY-MTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQ 367

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            D  ++TSLIAGY   G+   A++ FE + K+  +PDH+T V VLSAC+H+GLV +G   
Sbjct: 368 PDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDY 427

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  +   YG+    +H+AC++DL  R+G  ++A+ II+KM   P   +WA+LLG C+IH 
Sbjct: 428 FHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHG 487

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  + + AAE L E  PEN   YV +AN+YA  G W ++AK+R  M D GV K PG +W+
Sbjct: 488 NLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWI 547

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
                   FLV D S+ +++EI   LG L++ MK+ G+V    F
Sbjct: 548 AIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNF 591



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 192/410 (46%), Gaps = 40/410 (9%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ-SRRIRG 173
           L++ YA   L   A  L +    R    W  +IS YVR     EAL +++ M+ S   + 
Sbjct: 142 LISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKS 201

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           + FT  S L A   +  +  G+ +H  I     +    V +AL  MYGK G ++ AR +F
Sbjct: 202 NKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIF 261

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           DKM++RD V+W  MI  Y   G  KE F LF ++   G+  N  T             F 
Sbjct: 262 DKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT-------------FS 308

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
           GV                      L AC++  + +LGK++HG   R  +  +    +AL+
Sbjct: 309 GV----------------------LNACANQTSEELGKKVHGYMTRVGFDPFSFAASALV 346

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MYS+C ++  A  +FK T +  + +W S+++GY      +E+   F  + +SG +P+++
Sbjct: 347 HMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHI 406

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T   +L  CA    +  G ++   I  +         +  ++++ ARSG+  EA+++   
Sbjct: 407 TFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISK 466

Query: 473 MS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           MS + D+  + SL+ G  I G  ++A +  E +   +I+P++      L+
Sbjct: 467 MSMKPDKFLWASLLGGCRIHGNLKLAQRAAEAL--FEIEPENPATYVTLA 514



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 136/342 (39%), Gaps = 52/342 (15%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           V  L  GK++H   +  GL+ + V+   L   Y        A  + +    R  + W  +
Sbjct: 216 VPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAM 275

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-H 205
           I  Y +DG   E   ++  +    IR + FT+  VL AC      + G+ VH  +     
Sbjct: 276 IDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGF 335

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           +   F  +ALV MY K G +  A R+F +  + D  SW ++I+ YA  G   EA + F  
Sbjct: 336 DPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFEL 395

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ---ETYLDSVATVIGLGACSH 322
           + + G + + IT+  +   C   G     L+    ++ Q       D  A +I L A S 
Sbjct: 396 LVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARS- 454

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
                           G + E EN                   I+ KM+ +     W S+
Sbjct: 455 ----------------GQFDEAEN-------------------IISKMSMKPDKFLWASL 479

Query: 383 LSG---YTHLDCAEESAFLFREMFRSGVEP----NYVTIASI 417
           L G   + +L  A+ +A    E     +EP     YVT+A+I
Sbjct: 480 LGGCRIHGNLKLAQRAAEALFE-----IEPENPATYVTLANI 516


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/608 (32%), Positives = 315/608 (51%), Gaps = 44/608 (7%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + W  +I  Y   G +  A+  + +M S  I    FT+ +VL +C     +D G+ VHS 
Sbjct: 111 VSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSF 170

Query: 201 IDACHEWSLF-VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
           +    +  +  V N+L++MY K G   +A+ +FD+M  +D  +WNTMIS +     +  A
Sbjct: 171 VVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLA 230

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM-RTQETYLDSVATVIGLG 318
             LF +M +     ++++WN+I  G    G     LE  S M ++     D       L 
Sbjct: 231 LALFDQMTDP----DIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLS 286

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK------------------- 359
           AC++  +LKLGK+IH   VR        V NALI+MY++                     
Sbjct: 287 ACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNV 346

Query: 360 --------------DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
                         D+  A  +F     + ++ W +M+ GY       ++  LFR M R 
Sbjct: 347 IAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIRE 406

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G +PN  T+A++L + + +A+L HGK+ H   +R    +  + + N+L+ MY+RSG + +
Sbjct: 407 GPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSS-VSVGNALITMYSRSGSIKD 465

Query: 466 AKSVFD-LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           A+ +F+ + S RD +T+TS+I      G G  A++LFE+M +  +KPDH+T V VLSAC+
Sbjct: 466 ARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACT 525

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV +G+  F  M +++ I P   H+ACM+DL GRAGLL +A   I  MP  P    W
Sbjct: 526 HVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAW 585

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
            +LL +C++H+   + + AAEKLL   P NSG Y+ +AN  +A G W+  AKVR  M+D 
Sbjct: 586 GSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDK 645

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---S 701
            V+K  G +WV   N    F V+D  + Q   IY ++  + + +K  G++          
Sbjct: 646 AVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDL 705

Query: 702 EEEIVEEI 709
           E+E+ E+I
Sbjct: 706 EQEVKEQI 713



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 228/527 (43%), Gaps = 106/527 (20%)

Query: 179 PSVLKACGEMM-------DVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVAR 229
           PS   AC  ++       D   GR +H+ I         +F+ N L+++Y K G    A 
Sbjct: 9   PSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAH 68

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           RLFD+M  +   SWNT++SA+A  G    A ++F E+ +     + ++W T+  G    G
Sbjct: 69  RLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQP----DSVSWTTMIVGYNHLG 124

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
            FK  +    RM +             L +C+   AL +GK++H   V+        V N
Sbjct: 125 LFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVAN 184

Query: 350 ALITMYSRCKDLRHAYI-------------------------------LFKMTAEKSIIT 378
           +L+ MY++C D   A +                               LF    +  I++
Sbjct: 185 SLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVS 244

Query: 379 WNSMLSGYTH----LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           WNS+++GY H    +   E  +F+ +    S ++P+  T+ S+L  CA   +L+ GK+ H
Sbjct: 245 WNSIITGYCHQGYDIRALETFSFMLKS---SSLKPDKFTLGSVLSACANRESLKLGKQIH 301

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKV------------------------------- 463
            +I+ RA  +    + N+L+ MYA+SG V                               
Sbjct: 302 AHIV-RADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIG 360

Query: 464 --PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
               A+++FD +  RD V +T++I GY   G    AL LF  M +   KP++ T+ AVLS
Sbjct: 361 DIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLS 420

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEIITKM 575
             S    +  G++       ++ +  +LE  +       ++ +Y R+G +  A++I   +
Sbjct: 421 VISSLASLDHGKQ-------LHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHI 473

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAA---EKLLET--RPENSGY 617
                +  W +++ +   H   G+G  A    EK+L    +P++  Y
Sbjct: 474 CSYRDTLTWTSMILSLAQH---GLGNEAIELFEKMLRINLKPDHITY 517



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/505 (23%), Positives = 201/505 (39%), Gaps = 105/505 (20%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G    A  AF R+  +  S      +F +++  C   +AL  GK++H+  + LG      
Sbjct: 124 GLFKSAVHAFLRMVSSGISPTQF--TFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVP 181

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM---- 166
           +   L+  YA       A  + +   ++    WN +IS++++   +  AL ++ QM    
Sbjct: 182 VANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPD 241

Query: 167 ----------------------------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
                                       +S  ++ D FT  SVL AC     +  G+ +H
Sbjct: 242 IVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIH 301

Query: 199 S-CIDACHEWSLFVHNALVSMYGKFGQVDVARR--------------------------- 230
           +  + A  + +  V NAL+SMY K G V+VA R                           
Sbjct: 302 AHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGD 361

Query: 231 ------LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
                 +FD +  RD V+W  MI  YA  GL  +A  LF  M  EG + N  T       
Sbjct: 362 IDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYT------- 414

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                  L +V +VI     S + +L  GK++H  A+R      
Sbjct: 415 -----------------------LAAVLSVI-----SSLASLDHGKQLHAVAIRLEEVSS 446

Query: 345 ENVRNALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
            +V NALITMYSR   ++ A  +F  + + +  +TW SM+          E+  LF +M 
Sbjct: 447 VSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKML 506

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           R  ++P+++T   +L  C  V  ++ GK +   +            +  ++++  R+G +
Sbjct: 507 RINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLL 566

Query: 464 PEAKSVFDLMS-RRDEVTYTSLIAG 487
            EA +    M    D V + SL++ 
Sbjct: 567 EEAYNFIRNMPIEPDVVAWGSLLSS 591



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 63/303 (20%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W  +I  Y ++G  ++AL +++ M     + +N+T  +VL     +  +D G+ +
Sbjct: 375 RDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQL 434

Query: 198 HSCIDACHE-WSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGL 255
           H+      E  S+ V NAL++MY + G +  AR++F+ +   RD ++W +MI + A  GL
Sbjct: 435 HAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGL 494

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EA +LF +M    ++ + IT+  +                                  
Sbjct: 495 GNEAIELFEKMLRINLKPDHITYVGV---------------------------------- 520

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN---------ALITMYSRCKDLRHAYI 366
            L AC+HVG ++ GK          +   +NV N          +I +  R   L  AY 
Sbjct: 521 -LSACTHVGLVEQGKSY--------FNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYN 571

Query: 367 LFK-MTAEKSIITWNSMLSG---YTHLDCAEESA--FLFREMFRSGVEPNYVTIASILPL 420
             + M  E  ++ W S+LS    + ++D A+ +A   L  +   SG    Y+ +A+ L  
Sbjct: 572 FIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGA---YLALANTLSA 628

Query: 421 CAR 423
           C +
Sbjct: 629 CGK 631


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 198/622 (31%), Positives = 317/622 (50%), Gaps = 37/622 (5%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           VV  SF   +  CG+ + ++ GKQ+H  AI +G E +P +   L+T Y    +  +A  +
Sbjct: 239 VVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKV 298

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
                 +    WN LIS YV +G+  +AL +YKQM+   +  D+FT  +VL +       
Sbjct: 299 FNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLY 358

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           D GR++H+  +    + S+ + +AL++MY KFG  + A  +F  M ERD           
Sbjct: 359 DLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERD----------- 407

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                                   V+ W ++  G  +   +K  L+    M       DS
Sbjct: 408 ------------------------VVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDS 443

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 + AC+ +  + LG  IHG  ++        V ++L+ MYS+      A  +F  
Sbjct: 444 DIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSD 503

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              K+++ WNS++S Y   +  + S  LF ++ R+ + P+ V+  S+L   + VA L  G
Sbjct: 504 MPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKG 563

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H Y++R  +  + L + N+L++MY + G +  A+ +F+ +S ++ V + S+I GYG 
Sbjct: 564 KSVHGYLVRLWIPFD-LQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGS 622

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            GE   A++LF+EM  + IKPD VT +++LS+C+HSGL+ EG   FE M   +GI P++E
Sbjct: 623 HGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRME 682

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+  +VDLYGRAG L  A   +  MP  P  ++W +LL +C+IH N  +GE  A KLL  
Sbjct: 683 HYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNM 742

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P     YV + N+Y     WD+ A +R  M++ G++K PGC+W++  N    F   D S
Sbjct: 743 EPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVRNKVDVFYSGDCS 802

Query: 671 NVQAQEIYPLLGGLTELMKDAG 692
           +    EIY  L  L   M   G
Sbjct: 803 SPITTEIYDTLSSLKRNMIKKG 824



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/509 (24%), Positives = 244/509 (47%), Gaps = 48/509 (9%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV----ENSNIRYPLPWNLLI 147
           +GKQ+H+  +   L  +P L   L+  Y        A +L     + SNI   + WN++I
Sbjct: 157 EGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNI---VAWNVMI 213

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHE 206
             +  +G +  +L  Y   ++  ++  + ++   L ACG+   V FG+ VH   I    E
Sbjct: 214 GGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFE 273

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
              +VH +L++MYGK   ++ A ++F+++ +++   WN +ISAY   G   +A +++ +M
Sbjct: 274 DDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQM 333

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
           +                          +  +LS         DS   +  L + S  G  
Sbjct: 334 K--------------------------LCTVLS---------DSFTILNVLTSSSMAGLY 358

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            LG+ IH   V+        +++AL+TMYS+  D  +A  +F    E+ ++ W S++SG+
Sbjct: 359 DLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGF 418

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                 +E+   FR M    V+P+   +ASI+  C  +  +  G   H ++++  +    
Sbjct: 419 CQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGL-QLD 477

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           + + +SL++MY++ G    A ++F  M  ++ V + S+I+ Y       +++ LF ++ +
Sbjct: 478 VFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLR 537

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLL 565
           N + PD V+  +VL+A S    +++G+     +  ++  F  Q+E+   ++D+Y + GLL
Sbjct: 538 NDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVEN--TLIDMYIKCGLL 595

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIH 594
             A+ I  ++      A W +++G    H
Sbjct: 596 KYAQHIFERISEKNLVA-WNSMIGGYGSH 623



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/501 (24%), Positives = 223/501 (44%), Gaps = 74/501 (14%)

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHN 213
           Y EAL +Y +      R   FTYPS+LKAC  + ++ +G+ +HS I     H    ++ +
Sbjct: 37  YIEALKLYTKSPVYTTR---FTYPSLLKACASLSNLQYGKTIHSSIITTGLHS-DQYITS 92

Query: 214 ALVSMYGKFGQVDVARRLFDKMLER-----DAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +L+++Y K G    A ++FD++ +      D   WN++I  Y   G  +E    F  MQ 
Sbjct: 93  SLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQS 152

Query: 269 EGVE-----------------------------------------------VNVITWNTI 281
            G +                                                N++ WN +
Sbjct: 153 SGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVM 212

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
            GG    G ++  LE     +T+   + S +    L AC     +  GK++H  A++  +
Sbjct: 213 IGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGF 272

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
            +   V  +L+TMY +C+ +  A  +F    +K I  WN+++S Y     A ++  ++++
Sbjct: 273 EDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQ 332

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M    V  +  TI ++L   +       G+  H  I++R +    + + ++L+ MY++ G
Sbjct: 333 MKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPL-QSSITIQSALLTMYSKFG 391

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
               A S+F  M  RD V + S+I+G+    + + AL  F  M  + +KPD   M +++S
Sbjct: 392 DSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIIS 451

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFP----QLEHF--ACMVDLYGRAGLLNKAKEIITKM 575
           AC+       G ++ +   +I+G       QL+ F  + ++D+Y + G   +A  I + M
Sbjct: 452 ACT-------GLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDM 504

Query: 576 PYTPTSAMWATLLGACQIHRN 596
           P     A W +++ +C    N
Sbjct: 505 PLKNLVA-WNSII-SCYCRNN 523



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 30/216 (13%)

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           +S V     T  S+L  CA ++NLQ+GK  H  I+   + ++  +  +SL+ +Y + G  
Sbjct: 46  KSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYIT-SSLINIYVKCGTF 104

Query: 464 PEAKSVFDLMSRR----DEVT-YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
            +A  VFD + +     D+VT + S+I GY   G+    +  F  M  +  K        
Sbjct: 105 TDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKEGKQI--- 161

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
                 HS  +V     F+         P LE    ++D Y + G   +A+ +  K+   
Sbjct: 162 ------HS-YIVRNMLNFD---------PFLE--TALIDTYFKCGRPTEARYLFKKLKDR 203

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
                W  ++G        G+ E + E  L  + EN
Sbjct: 204 SNIVAWNVMIGG---FGENGLWENSLEYYLLAKTEN 236


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/582 (33%), Positives = 318/582 (54%), Gaps = 51/582 (8%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP-LP 142
           CG +  L+ G  LH   +  G+   P +V  L      FS+Y   C   E++ I +P LP
Sbjct: 225 CGVLGELSVGTCLHGFGVKAGVGHCPSVVSSL------FSMYTK-CDSTEDARILFPELP 277

Query: 143 ------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
                 W  LI  Y R G   +A+ ++  M+   ++ D      +L   G    V  G+ 
Sbjct: 278 EKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKT 337

Query: 197 VHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            H+ I       S+ + NAL+SMY K  QVD+A  +F  + +RD  SW++M+ AY   GL
Sbjct: 338 FHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGL 397

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATV 314
             +  +L+ EMQ                                  R ++ +  D+ + +
Sbjct: 398 DLKCLELYREMQ---------------------------------FRDKDEFEYDTNSLI 424

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + +CS +G L+LG+  H  +++   GE  +V NALI+MY RC +   A  +F M   K
Sbjct: 425 SIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTK 484

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            ++TW++++S Y+HL  ++++  L+ +M   GV+PN  T+ S++  CA +A L+HG+  H
Sbjct: 485 DVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIH 544

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            ++ +       L +  +LV+MY + G++  A+ +FD M  RD VT+  +I+GYG+ GE 
Sbjct: 545 SHV-KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEA 603

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             ALKLF  M +  +KP+ +T +A+LSAC H+GLV +G++ F RM   Y + P L+H+AC
Sbjct: 604 IQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYAC 662

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL G++G L +A+++++ MP  P   +W TLLGAC++H N  +G   A+K   + PEN
Sbjct: 663 MVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPEN 722

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
            GYY+L++N Y +   W+++ K+R  M++ GV K  G + +D
Sbjct: 723 DGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTID 764



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 236/508 (46%), Gaps = 53/508 (10%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LHA A+  GL   P    KLV+ Y+S  L   A      S       WN L+    R   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215
           +A  L  +++M++   R   FT P V  A  E+  +  G  VH+            ++  
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHA------------YSVR 135

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
             +    G V VA               ++++  YA  G  ++A +LF EM E     +V
Sbjct: 136 FGLLEGDGSVAVA---------------SSLVYMYARCGSVRDAVRLFDEMPER----DV 176

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRM---------RTQETYLDSVATVIGLGACSHVGAL 326
           + W  +  GC+  G     L  L RM         R     ++S     GL AC  +G L
Sbjct: 177 VAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMES-----GLEACGVLGEL 231

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            +G  +HG  V+   G   +V ++L +MY++C     A ILF    EK +++W S++  Y
Sbjct: 232 SVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAY 291

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                AE++  LF  M  SG++P+ V I+ +L      A ++ GK FH  I+RR  F + 
Sbjct: 292 CRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRN-FGDS 350

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-- 504
           +L+ N+L+ MYA+  +V  A +VF ++ +RD  +++S++  Y   G     L+L+ EM  
Sbjct: 351 VLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQF 410

Query: 505 -NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRA 562
            +K++ + D  ++++++S+CS  G +  GQ       SI  +  +    A  ++ +YGR 
Sbjct: 411 RDKDEFEYDTNSLISIISSCSRLGRLRLGQSA--HCYSIKHLAGENSSVANALISMYGRC 468

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGA 590
           G  + A++I   M  T     W+ L+ +
Sbjct: 469 GNFDVARKIF-GMVKTKDVVTWSALISS 495



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 43/245 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C  + AL  G+ +H+    +GLE +  +   LV  Y        A  + ++ 
Sbjct: 523 TLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSM 582

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN++IS Y   G   +AL ++  M+   ++ ++ T+ ++L AC     VD GR
Sbjct: 583 LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGR 642

Query: 196 VVHSCIDACHEWSL---FVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
            + + ++   E+SL     H A +V + GK G +  A  +   M +E D   W T++ A 
Sbjct: 643 ELFTRME---EYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGAC 699

Query: 250 ---------------------------------YASKGLWKEAFQLFVEMQEEGVEVNVI 276
                                            Y S   W E  +L   M+  GVE + I
Sbjct: 700 KMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKS-I 758

Query: 277 TWNTI 281
            W+TI
Sbjct: 759 GWSTI 763


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 207/648 (31%), Positives = 335/648 (51%), Gaps = 95/648 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A I+  CG   +   GKQLHA +I  G   +  +  KL+  YA    + NAC + +  
Sbjct: 53  TYASILDSCG---SPILGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTM 109

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDF 193
            +R    W  L+ +Y+  GF+ EA  +++Q+  +  R+R D F +P VLK C  +  V+ 
Sbjct: 110 PLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVEL 169

Query: 194 GRVVHSCI-----DACHEWSLFV---------HNALVSMYGKFGQVDVARRLFDKM---- 235
           GR +H        D    + +F          +NA+++ Y + G +  A+ LFD+M    
Sbjct: 170 GRQMHGMALKHDGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEG 229

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           +++D +SWN+MIS Y    L+ EA+ LF ++ +EG+E +  T  ++  GC          
Sbjct: 230 VQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCA--------- 280

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           ++ S  R +E +  S+A V GL + S VG                         AL+ MY
Sbjct: 281 DMASIRRGKEAH--SLAIVRGLQSNSIVGG------------------------ALVEMY 314

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN----- 410
           S+C+D+  A + F   +E+ + TWN+++SGY   + AE+   L ++M R G EPN     
Sbjct: 315 SKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWN 374

Query: 411 -----YV-------------------------TIASILPLCARVANLQHGKEFHCYILRR 440
                YV                         T+  IL  C+R+A +Q GK+ H Y +R 
Sbjct: 375 GIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIR- 433

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
           A  +  + +  +LV+MYA+ G V     V++++S  + V++ +++  Y + G G   + L
Sbjct: 434 AGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIAL 493

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F  M  ++++PDHVT +AVLS+C H+G +  G +    M + Y + P L+H+ CMVDL  
Sbjct: 494 FRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVA-YNVMPSLKHYTCMVDLLS 552

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           RAG L +A E+I  +P    +  W  LLG C IH    +GE AAEKL+E  P N G YV+
Sbjct: 553 RAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVM 612

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           +AN+YA+ G W  L + R  M+D+G++K PGC+W++  +    F+  D
Sbjct: 613 LANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSWIEDRDGIHVFVAKD 660



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/485 (28%), Positives = 233/485 (48%), Gaps = 43/485 (8%)

Query: 72  VVLDSFAHII---FCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA 128
           V LD F   +    CCG + A+  G+Q+H  A+     K+   +      ++ FS  + A
Sbjct: 147 VRLDFFVFPVVLKICCG-LCAVELGRQMHGMAL-----KHDGDMKSAFEMFSRFSRKSAA 200

Query: 129 CFLV------ENSNI----------------RYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +        EN N+                +  + WN +IS YV    + EA  +++ +
Sbjct: 201 SYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDL 260

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               I  D+FT  SVL  C +M  +  G+  HS  I    + +  V  ALV MY K   +
Sbjct: 261 LKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDI 320

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A+  FD + ERD  +WN +IS YA     ++  +L  +M+ +G E NV TWN I  G 
Sbjct: 321 VAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGY 380

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
           +    +   ++L + M+      D     I L ACS +  ++ GK++H  ++R  +    
Sbjct: 381 VENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDV 440

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           ++  AL+ MY++C D++H Y ++ M +  ++++ N+ML+ Y      EE   LFR M  S
Sbjct: 441 HIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLAS 500

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN--EHLLLWNSLVEMYARSGKV 463
            V P++VT  ++L  C    +L+ G E  C  L  A +N    L  +  +V++ +R+G++
Sbjct: 501 KVRPDHVTFLAVLSSCVHAGSLEIGHE--CLALMVA-YNVMPSLKHYTCMVDLLSRAGQL 557

Query: 464 PEAKSVF-DLMSRRDEVTYTSLIAGYGIQGE---GRVALKLFEEMNKNQIKPDHVTMVAV 519
            EA  +  +L +  D VT+ +L+ G  I  E   G +A +   E+  N   P +  M+A 
Sbjct: 558 YEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNN--PGNYVMLAN 615

Query: 520 LSACS 524
           L A +
Sbjct: 616 LYASA 620


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/633 (30%), Positives = 320/633 (50%), Gaps = 41/633 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  CG V AL  G++ H  A+ +GL+ N  +   L+  Y       +A  L +  
Sbjct: 144 TLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWM 203

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF-- 193
           +    + +  ++    + G   +AL ++ +M    IR D     SVL AC +    D+  
Sbjct: 204 SSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNV 263

Query: 194 ------GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
                  + +H+  +    +    V N+L+ MY K  ++D A ++F+ M     VSWN +
Sbjct: 264 ARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNIL 323

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVN-------------------------------V 275
           ++ Y   G ++ A ++   MQE G E N                               V
Sbjct: 324 VTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSV 383

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            TWNT+  G  +    +  +EL  RM+ Q    D     + L  CS +G L+LGK++H +
Sbjct: 384 TTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSA 443

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           +V+        V + LI MYS+C  +  A I+F M  E+ ++ WNSM+SG       EE+
Sbjct: 444 SVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEA 503

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
              F++M  +G+ P   + AS++  CAR++++  G++ H  +L+   +++++ + +SL++
Sbjct: 504 FDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDG-YDQNVYVGSSLID 562

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+ G + +A+  F+ M  ++ V +  +I GY   G G  A++LFE M   + KPD VT
Sbjct: 563 MYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVT 622

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            +AVL+ CSHSGLV E    F  M S YGI P +EH+ C++D  GRAG   +   +I KM
Sbjct: 623 FIAVLTGCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKM 682

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           PY   + +W  LL AC +H N  +GE+AA+ L    P+N   YVL++N+YA  G     +
Sbjct: 683 PYKDDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDAS 742

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
            VR  M   GV K  G +WV+  +    F+V D
Sbjct: 743 AVRALMSSRGVVKGRGYSWVNHKDGARAFMVAD 775



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 200/466 (42%), Gaps = 82/466 (17%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + WN +I+   R     EAL +Y+ M    +   NFT  SVL ACG +  +D GR  
Sbjct: 105 RNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC 164

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H   +    + + FV N L+ MY K G V  A RLFD M   + VS+  M+         
Sbjct: 165 HGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMM--------- 215

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
                                     GG  ++G     L L +RM      +D VA    
Sbjct: 216 --------------------------GGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSV 249

Query: 317 LGACSHV--------GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           LGAC+           A++L + IH   VR  +   ++V N+LI MY++   +  A  +F
Sbjct: 250 LGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVF 309

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
           +  +  SI++WN +++GY  L C E +  +   M  SG EPN VT +++L  C +  +  
Sbjct: 310 ESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARD-- 367

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
                                             VP A+++FD +S+    T+ +L++GY
Sbjct: 368 ----------------------------------VPSARAMFDKISKPSVTTWNTLLSGY 393

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           G +   +  ++LF  M    ++PD  T+  +LS CS  G ++E  KQ    +    +   
Sbjct: 394 GQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLG-ILELGKQVHSASVKLLLHND 452

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           +   + ++D+Y + G +  A +II  M        W +++    IH
Sbjct: 453 MFVASGLIDMYSKCGQVGIA-QIIFNMMTERDVVCWNSMISGLAIH 497


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 208/647 (32%), Positives = 339/647 (52%), Gaps = 51/647 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALG 104
           +   G  S+  E F  +     S DV LDS     I   CG++  L   K +H C I   
Sbjct: 175 YVDNGESSEGLEMFRLL----VSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQR 230

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           +E    L   LV  Y+    +++A  +  N   R    W  +IS Y R  ++ +AL V+ 
Sbjct: 231 IETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFV 290

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH----EWSLFVHNALVSMYG 220
           +M   ++  +  T  +VL +C     +  G+ VH C    H    + SL    AL+  Y 
Sbjct: 291 EMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVH-CYAVKHIDLDDDSL--GPALIEYYA 347

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           +FG++    ++   + +R+ +SWN +IS YAS+GL+KEA  +FV+MQ +G          
Sbjct: 348 QFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQG---------- 397

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                                       DS +    + AC++VG L LG +IHG A++  
Sbjct: 398 -------------------------QIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRH 432

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
             + E V+N+LI MYS+C  +  AY++F     KS++ WNSM+ G++ +  + E+  LF 
Sbjct: 433 ILD-EFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFD 491

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M+ + ++ N VT  + +  C+ + +L+ GK  H  ++   +  + L +  +L++MYA+ 
Sbjct: 492 QMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGV-KKDLFIDTALIDMYAKC 550

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G +  A  VFD MS R  V+++++I G G+ G+   A+ LF EM + ++KP+ +T + +L
Sbjct: 551 GDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNIL 610

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           SACSHSG V EG+  F  M + + + P LEHFACMVDL  RAG L++A  II  MP+   
Sbjct: 611 SACSHSGYVEEGKFYFNSMKN-FEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAE 669

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           +++W  LL  C+IH+   +       LL+ R +++GYY L++N+YA  G WD   KVR+ 
Sbjct: 670 ASIWGALLNGCRIHQRMDMIRNIERDLLDMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSA 729

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
           M+ +G++K+PG + ++       F   D S+ Q +EI   L     L
Sbjct: 730 MKGIGLKKVPGYSTIELDKKVYRFGAGDVSHWQVKEINTFLENFQSL 776



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 236/508 (46%), Gaps = 57/508 (11%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LH+  +  GL  +P    KL+  Y+      ++  + E         W +LI  +V   F
Sbjct: 20  LHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIKCHVWSNF 79

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-----DACHEWSLF 210
             EA+ +Y +M  ++I   +F + SVL+AC    ++D G  VH  I     D  H     
Sbjct: 80  CGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDH----V 135

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V  +L+ MYG  G +  A+++FD M  RD VSW+++IS Y   G   E            
Sbjct: 136 VETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEG----------- 184

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
                                   LE+   + +Q+  LDSV  +   GAC  +G L+L K
Sbjct: 185 ------------------------LEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAK 220

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
            +HG  +R        + +AL+ MYSRC D   A  +F     +SI +W +M+S Y    
Sbjct: 221 SVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSR 280

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             +++  +F EM    V PN VTI ++L  CA    L+ GK  HCY ++    ++   L 
Sbjct: 281 WFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDD-SLG 339

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            +L+E YA+ GK+   + V   + +R+ +++  LI+ Y  QG  + AL +F +M +    
Sbjct: 340 PALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQI 399

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ---LEHFA--CMVDLYGRAGLL 565
           PD  ++ + +SAC++ GL+  G +       I+G   +   L+ F    ++D+Y + G +
Sbjct: 400 PDSFSLSSSISACANVGLLWLGHQ-------IHGYAIKRHILDEFVQNSLIDMYSKCGHV 452

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQI 593
           + A  I  ++      A  + + G  QI
Sbjct: 453 DLAYLIFDRIQSKSVVAWNSMICGFSQI 480


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  336 bits (862), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 200/561 (35%), Positives = 304/561 (54%), Gaps = 28/561 (4%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV- 196
           R  + WN ++S Y ++G+  EA  ++ +M  +    ++ ++  +L A      V  GR+ 
Sbjct: 140 RDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAY-----VQNGRIE 190

Query: 197 -VHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
                 ++  +W L   N ++  Y K  ++  AR +FD+M ERD VSWNTMIS YA  G 
Sbjct: 191 DARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE 250

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EA +LF    EE    +V TW  +  G ++ G       +   M  ++  +   A + 
Sbjct: 251 LLEAQRLF----EESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM-PEKNSVSWNAIIA 305

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTAE 373
           G   C     +   +E+  +    C    +NV   N +IT Y++  D+  A   F    +
Sbjct: 306 GYVQCKR---MDQARELFEAMP--C----QNVSSWNTMITGYAQNGDIAQARNFFDRMPQ 356

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +  I+W ++++GY      EE+  LF EM R G   N  T  S L  CA +A L+ GK+ 
Sbjct: 357 RDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQV 416

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  +++ A       + N+L+ MY + G + +A  VF+ +  ++ V++ ++IAGY   G 
Sbjct: 417 HGRVVK-AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGF 475

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G+ AL LFE M K  I PD VTMV VLSACSH+GLV +G + F  MT  YGI    +H+ 
Sbjct: 476 GKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYT 535

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CM+DL GRAG L+ A+ ++  MP+ P +A W  LLGA +IH NT +GE AA+ + E  P+
Sbjct: 536 CMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPD 595

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           NSG YVL++N+YAA+G W  + ++R  MRD GV+K+PG +WV+  N    F V D+ + +
Sbjct: 596 NSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPE 655

Query: 674 AQEIYPLLGGLTELMKDAGYV 694
              IY  L  L   MK  GYV
Sbjct: 656 RDRIYTFLEELDLKMKKEGYV 676



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 202/425 (47%), Gaps = 61/425 (14%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E++ V    +++ YA       A  L E S +R    W  ++S YV++G   EA  V+  
Sbjct: 232 ERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 291

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           M  +    ++ ++ +++    +   +D  R +   +  C   S +  N +++ Y + G +
Sbjct: 292 MPEK----NSVSWNAIIAGYVQCKRMDQARELFEAM-PCQNVSSW--NTMITGYAQNGDI 344

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR  FD+M +RD++SW  +I+ YA  G  +EA  LFVEM+ +G  +N  T+ +     
Sbjct: 345 AQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTST---- 400

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-----GC 340
                                          L  C+ + AL+LGK++HG  V+     GC
Sbjct: 401 -------------------------------LSTCAEIAALELGKQVHGRVVKAGLESGC 429

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           Y     V NAL+ MY +C ++  AYI+F+   EK +++WN+M++GY      +E+  LF 
Sbjct: 430 Y-----VGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFE 484

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M ++G+ P+ VT+  +L  C+    +  G E+   + +      +   +  ++++  R+
Sbjct: 485 SMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRA 544

Query: 461 GKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE---GRVALKLFEEMNKNQIKPDHVTM 516
           G++ +A+++   M    D  T+ +L+    I G    G  A K+  EM     +PD+  M
Sbjct: 545 GRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-----EPDNSGM 599

Query: 517 VAVLS 521
             +LS
Sbjct: 600 YVLLS 604



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 156/350 (44%), Gaps = 62/350 (17%)

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           D V WN  I+ +   G    A +LF  M       + I+WN +  GCL    F    +L 
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRR----SSISWNAMISGCLSNDKFYLARQLF 103

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
            +M T+    D V+                                    N +I+   R 
Sbjct: 104 EKMPTR----DLVSW-----------------------------------NVMISGCVRY 124

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
           ++LR A +LF    E+ +++WN+MLSGY      +E+  +F EM      P   +I+   
Sbjct: 125 RNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM------PCKNSISWNG 178

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
            L A V   Q+G+      L  +  +  L+ WN ++  Y +  ++ +A+ +FD M  RDE
Sbjct: 179 MLAAYV---QNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDE 235

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           V++ ++I+GY   GE   A +LFEE   + ++ D  T  A++S    +G++ E ++ F+ 
Sbjct: 236 VSWNTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDEARRVFDG 291

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           M     +      +  ++  Y +   +++A+E+   MP    S+ W T++
Sbjct: 292 MPEKNSV-----SWNAIIAGYVQCKRMDQARELFEAMPCQNVSS-WNTMI 335



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 14/237 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C ++ AL  GKQ+H   +  GLE    +   L+  Y      ++A  + E  
Sbjct: 396 TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI 455

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I+ Y R GF  EAL +++ M+   I  D+ T   VL AC     VD G 
Sbjct: 456 EEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG- 514

Query: 196 VVHSCIDACHEWSLFVHNA----LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
                     ++ +  ++     ++ + G+ G++D A+ L   M  E DA +W  ++ A 
Sbjct: 515 -TEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS 573

Query: 250 --YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
             + +  L ++A ++  EM+ +   + V+  N  A     +G +  V  +  RMR +
Sbjct: 574 RIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAA----SGRWGDVGRMRLRMRDR 626



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           ++ WN  +  + R+G+   A  +F+ M RR  +++ ++I+G     +  +A +LFE+M  
Sbjct: 49  IVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPT 108

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE--HFACMVDLYGRAGL 564
                D V+   ++S C     +   +  F++M       P+ +   +  M+  Y + G 
Sbjct: 109 R----DLVSWNVMISGCVRYRNLRAARLLFDQM-------PERDVVSWNAMLSGYAQNGY 157

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGA 590
           + +AKEI  +MP    S  W  +L A
Sbjct: 158 VKEAKEIFDEMP-CKNSISWNGMLAA 182


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 202/642 (31%), Positives = 337/642 (52%), Gaps = 47/642 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  + A+  G ++H+ A   GLE +  +   LV FYA   +   A  L  + 
Sbjct: 111 TYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  + WN +I+     G   +A+ +  QMQ   I  ++ T   VL   GE   +  G+
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  C+    +  + V   L+ MY K   +  AR++FD M  R+ VSW           
Sbjct: 231 ALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSW----------- 279

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                                   + + GG + +   K  LEL  +M  ++  +D     
Sbjct: 280 ------------------------SAMIGGYVXSDCMKEALELFDQMILKDA-MDPTPVT 314

Query: 315 IG--LGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKM 370
           +G  L AC+ +  L  G+++H   ++   G   ++   N L++MY++C  +  A   F  
Sbjct: 315 LGSVLRACAKLTDLSRGRKLHCYIIK--LGXVLDILLGNTLLSMYAKCGVIDDAIRFFDX 372

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              K  +++++++SG      A  +  +FR M  SG++P+  T+  +LP C+ +A LQHG
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
              H Y++ R  F    L+ N+L++MY++ GK+  A+ VF+ M R D V++ ++I GYGI
Sbjct: 433 FCSHGYLIVRG-FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGI 491

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G G  AL LF ++    +KPD +T + +LS+CSHSGLV+EG+  F+ M+  + I P++E
Sbjct: 492 HGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRME 551

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H  CMVD+ GRAGL+++A   I  MP+ P   +W+ LL AC+IH+N  +GE  ++K+   
Sbjct: 552 HCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSL 611

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            PE++G +VL++N+Y+A G WD  A +R   +D G++KIPGC+W++   +   F+  D S
Sbjct: 612 GPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQS 671

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
           ++Q  +I   L  L   MK  GY  +  F     EEE  E+I
Sbjct: 672 HLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQI 713



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 151/523 (28%), Positives = 256/523 (48%), Gaps = 47/523 (8%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           V +++ H++  C + K+L + K++H   +      +  ++ KL   Y S     N   L 
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC----NQVVLA 62

Query: 133 ENSNIRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
                  P P    WN +I  Y  +G +  A+ +Y  M    +R + +TYP VLKAC  +
Sbjct: 63  RRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGL 122

Query: 189 MDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
           + ++ G  +HS       E  +FV  ALV  Y K G +  A+RLF  M  RD V+WN MI
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           +  +  GL  +A QL ++MQEEG+             C  +    GVL  +   +     
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGI-------------CPNSSTIVGVLPTVGEAK----- 224

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
                            AL  GK +HG  VR  +     V   L+ MY++C+ L +A  +
Sbjct: 225 -----------------ALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVAN 426
           F +   ++ ++W++M+ GY   DC +E+  LF +M  +  ++P  VT+ S+L  CA++ +
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L  G++ HCYI++     + +LL N+L+ MYA+ G + +A   FD M+ +D V+++++++
Sbjct: 328 LSRGRKLHCYIIKLGXVLD-ILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVS 386

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           G    G   VAL +F  M  + I PD  TM+ VL ACSH   +  G      +  + G  
Sbjct: 387 GCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI-VRGFA 445

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
                   ++D+Y + G ++ A+E+  +M      +  A ++G
Sbjct: 446 TDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIG 488



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 2/238 (0%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112
           + +A E F ++ I   + D    +   ++  C K+  L++G++LH   I LG   + +L 
Sbjct: 292 MKEALELFDQM-ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLG 350

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
             L++ YA   + ++A    +  N +  + ++ ++S  V++G  A AL +++ MQ   I 
Sbjct: 351 NTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGID 410

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
            D  T   VL AC  +  +  G   H   I         + NAL+ MY K G++  AR +
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 470

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           F++M   D VSWN MI  Y   GL  EA  LF ++   G++ + IT+  +   C  +G
Sbjct: 471 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 528



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            R  V+ NY+    +L  C +  +L   K+ H + L+     +  +L + L  +Y    +
Sbjct: 3   LRXEVKNNYL---HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVL-HKLTRLYLSCNQ 58

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           V  A+ +FD +     + +  +I  Y   G    A+ L+  M    ++P+  T   VL A
Sbjct: 59  VVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA 118

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CS   L +E   +      ++G+   +     +VD Y + G+L +A+ + + M +    A
Sbjct: 119 CS-GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA 177

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
            W  ++  C ++   G+ + A + +++ + E
Sbjct: 178 -WNAMIAGCSLY---GLCDDAVQLIMQMQEE 204



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 84/204 (41%), Gaps = 9/204 (4%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           GN + A   F  ++++    D  L +   ++  C  + AL  G   H   I  G   + +
Sbjct: 392 GNAAVALSIFRMMQLSGIDPD--LTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTL 449

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  Y+     + A  +    +    + WN +I  Y   G   EAL ++  + +  
Sbjct: 450 ICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALG 509

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN----ALVSMYGKFGQVD 226
           ++ D+ T+  +L +C     V  GR+    +    ++S+         +V + G+ G +D
Sbjct: 510 LKPDDITFICLLSSCSHSGLVMEGRLWFDAMS--RDFSIVPRMEHCICMVDILGRAGLID 567

Query: 227 VARRLFDKM-LERDAVSWNTMISA 249
            A      M  E D   W+ ++SA
Sbjct: 568 EAHHFIRNMPFEPDVRIWSALLSA 591


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 204/634 (32%), Positives = 334/634 (52%), Gaps = 44/634 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C ++  L  G++LHA  +  G E N +    L+  Y      ++A  +    + + 
Sbjct: 272 VLQVCTELAQLNLGRELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKD 330

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN ++S YV++G YAEA+    +M     + D+    S+  A G +  +  G+ VH+
Sbjct: 331 YISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHA 390

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             I    +    V N L+ MY K   ++ +  +FD+M  +D +SW T+I+ YA      E
Sbjct: 391 YAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIE 450

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A ++F E Q+EG++V+ +   +I                                   L 
Sbjct: 451 ALEIFREAQKEGIKVDPMMIGSI-----------------------------------LE 475

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           ACS +  + L K++H  A+R    +   V+N +I +Y  C ++ H+  +F+   +K I+T
Sbjct: 476 ACSGLETILLAKQLHCYAIRNGLLDLV-VKNRIIDIYGECGEVYHSLKMFETVEQKDIVT 534

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W SM++ Y +     E+  LF EM  + V+P+ V + SIL     +++L  GKE H +++
Sbjct: 535 WTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLI 594

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           RR    E  ++ +SLV+MY+  G +  A  VF+ +  +D V +T++I   G+ G G+ A+
Sbjct: 595 RRNFHMEEAIV-SSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAI 653

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LF+ M +  + PDHV+ +A+L ACSHS LV EG+   + M S Y + P  EH+AC+VDL
Sbjct: 654 DLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDL 713

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GR+G   +A E I  MP  P S +W +LLGAC++H+N  +   AA +LLE  P+N G Y
Sbjct: 714 LGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNY 773

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N++A  G W+   +VR  + + G+RK P C+W++ GN    F   D S+  A+ I 
Sbjct: 774 VLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERIN 833

Query: 679 PLLGGLTE-LMKDAGYVVKEEF----CSEEEIVE 707
             L  +TE L K+ GY           SEEE V+
Sbjct: 834 LKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVD 867



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 172/588 (29%), Positives = 268/588 (45%), Gaps = 81/588 (13%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           +LK     GNL +A    T             + +  ++      KA+AQG Q+HA A+A
Sbjct: 30  SLKQLCKEGNLRQALRLLTS---QTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVA 86

Query: 103 LG-LE-KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
            G LE  +  L  KL+  Y       +A  L +  + R    WN LI  Y+  G   EAL
Sbjct: 87  TGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEAL 146

Query: 161 CVYKQMQSRRIRG---DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALV 216
            VY+ M+     G   D  T  SVLKA G   D   G  VH   +    + S FV NAL+
Sbjct: 147 GVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALI 206

Query: 217 SMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           +MY K G +D A R+F+ M + RD  SWN+MIS     G++ +A  LF  MQ   + +N 
Sbjct: 207 AMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMN- 265

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            ++ T+           GVL++                      C+ +  L LG+E+H +
Sbjct: 266 -SYTTV-----------GVLQV----------------------CTELAQLNLGRELHAA 291

Query: 336 AVRGCYGEYENVR-NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            ++   G   N++ NAL+ MY++C  +  A  +F+   EK  I+WNSMLS Y       E
Sbjct: 292 LLKS--GSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAE 349

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +     EM R G +P++  I S+      +  L +GKE H Y +++ + +    + N+L+
Sbjct: 350 AIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRL-DSDTQVGNTLM 408

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MY +   +  +  VFD M  +D +++T++I  Y        AL++F E  K  IK D +
Sbjct: 409 DMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPM 468

Query: 515 TMVAVLSACS-----------HSGLVVEGQKQF---ERMTSIYG----IFPQLEHF---- 552
            + ++L ACS           H   +  G        R+  IYG    ++  L+ F    
Sbjct: 469 MIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVE 528

Query: 553 -------ACMVDLYGRAGLLNKAKEIITKMPYT---PTSAMWATLLGA 590
                    M++ Y  +GLLN+A  +  +M  T   P S    ++LGA
Sbjct: 529 QKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGA 576



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 9/181 (4%)

Query: 417 ILPLCARVANLQHGKEFHCY-ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           +L L A    +  G + H + +   ++  +   L   L+ MY + G+V +A+ +FD MS 
Sbjct: 64  VLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSS 123

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMN---KNQIKPDHVTMVAVLSACSHSGLVVEG 532
           R   ++ +LI  Y   G    AL ++  M     + + PD  T+ +VL A   SG+  +G
Sbjct: 124 RTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKA---SGVEGDG 180

Query: 533 QK--QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +   +   +   +G+         ++ +Y + G+L+ A  +   M      A W +++  
Sbjct: 181 RCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISG 240

Query: 591 C 591
           C
Sbjct: 241 C 241


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 210/623 (33%), Positives = 319/623 (51%), Gaps = 42/623 (6%)

Query: 91  AQGKQLHACAIALGL-EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           A   QLHACA+ LGL   N      LV  Y  F     A  + +    R    WN ++S 
Sbjct: 83  ASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSG 142

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
             R+   A+A+ +  +M    + GD  T  SVL  C  + D     V+H   +       
Sbjct: 143 LCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGE 202

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           LFV NAL+ +YGK G +  A  +F  M  RD V+WN++ISA    G    A +LF  M E
Sbjct: 203 LFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMME 262

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
            GV  +V+T  ++A    + G+  G   +   +R +                       +
Sbjct: 263 SGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRR--------------------GWDV 302

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G  I G              NA++ MY++   +  A  +F    ++ +++WN++++GY  
Sbjct: 303 GDIIAG--------------NAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQ 348

Query: 389 LDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
              A E+  ++ +M    G++P   T  S+LP  + +  LQ G   H   ++  + N  +
Sbjct: 349 NGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGL-NLDV 407

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            +   L+++YA+ GK+ EA  +F+ M RR    + ++IAG G+ G G  AL LF +M + 
Sbjct: 408 YVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQE 467

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
           +IKPDHVT V++L+ACSH+GLV +G+  F+ M ++YGI P  +H+ CMVD+ GRAG L++
Sbjct: 468 EIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDE 527

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A E I  MP  P SA+W  LLGAC+IH N  +G+ A++ L E  PEN GYYVL++NMYA 
Sbjct: 528 AFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAK 587

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL--VDDTSNVQAQEIYPLLGGLT 685
            G WD +  VR+ +R   ++K PG + ++     S F        + Q +EI   L  L 
Sbjct: 588 IGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLL 647

Query: 686 ELMKDAGYVVKEEFCSEEEIVEE 708
             MK AGYV    F  ++  VEE
Sbjct: 648 AKMKSAGYVPDYSFVLQD--VEE 668



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 217/458 (47%), Gaps = 47/458 (10%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSC---IDACHEWSLFVHNALVSMYGKFGQVDV 227
           +R D+FT+P +++A            +H+C   +   H  ++F   +LV  Y +FG+V  
Sbjct: 65  LRPDSFTFPPLVRAAPGPAS---AAQLHACALRLGLLHP-NVFASGSLVHAYLRFGRVAE 120

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A R+FD+M ERD  +WN M+S         +A  L   M  EGV  + +T +++   C+ 
Sbjct: 121 AYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVV 180

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
            G+                   ++A V+      HV A+K           G  GE   V
Sbjct: 181 LGD------------------RALALVM------HVYAVK----------HGLSGEL-FV 205

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            NALI +Y +   L  A+ +F   A + ++TWNS++S          +  LF  M  SGV
Sbjct: 206 CNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGV 265

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            P+ +T+ S+    A+  +    K  HCY+ RR      ++  N++V+MYA+  K+  A+
Sbjct: 266 CPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQ 325

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHS 526
            VFD +  RD V++ +LI GY   G    A++++ +M N   +KP   T V+VL A S+ 
Sbjct: 326 KVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYL 385

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G + +G +    ++   G+   +    C++DLY + G L +A  +   MP   T   W  
Sbjct: 386 GGLQQGMR-MHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP-WNA 443

Query: 587 LLGACQIHRN--TGIGEWAAEKLLETRPENSGYYVLIA 622
           ++    +H +    +  ++  +  E +P++  +  L+A
Sbjct: 444 IIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLA 481



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 10/235 (4%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++     +  L QG ++HA +I  GL  +  +   L+  YA       A FL E+ 
Sbjct: 374 TFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHM 433

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R   PWN +I+     G  A+AL ++ QMQ   I+ D+ T+ S+L AC     VD GR
Sbjct: 434 PRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGR 493

Query: 196 VVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYAS 252
                +   +        +  +V M G+ GQ+D A      M ++ D+  W  ++ A   
Sbjct: 494 SFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRI 553

Query: 253 KG---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            G   + K A Q   E+  E V   V+  N  A    + G + GV  + S +R Q
Sbjct: 554 HGNVEMGKVASQNLFELDPENVGYYVLMSNMYA----KIGKWDGVDAVRSLVRRQ 604


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 193/607 (31%), Positives = 325/607 (53%), Gaps = 22/607 (3%)

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVY--- 163
           P L ++      Y+ +  L E       LP      WN+LI  Y   G    A+  Y   
Sbjct: 67  PNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 126

Query: 164 -KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
            K   S   R    T  ++LK       V  G+ +H   I    E  L V + L+ MY K
Sbjct: 127 MKDFSSNLTR---VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSK 183

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  A+++F  + +R+ V +NT++    + G+ ++A QLF      G+E + ++W+ +
Sbjct: 184 VGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLF-----RGMEKDSVSWSAM 238

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
             G  + G  K  +E    M+ +   +D       L AC  +GA+  G++IH   +R   
Sbjct: 239 IKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNL 298

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
            ++  V +ALI MY +CK L +A  +F    +K++++W +M+ GY     A E+  +F +
Sbjct: 299 QDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLD 358

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M RSG++P++ T+   +  CA +++L+ G +FH   +   + + ++ + NSLV +Y + G
Sbjct: 359 MQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIH-YITVSNSLVTLYGKCG 417

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + ++  +F+ M+ RDEV++T++++ Y   G    A++LF++M +  +KPD VT+  V+S
Sbjct: 418 DIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVIS 477

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACS +GLV +GQ+ FE M + YGI P   H++CM+DL+ R+G + +A   I  MP+ P +
Sbjct: 478 ACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDA 537

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
             W TLL AC+   N  IG+WAAE L+E  P +   Y L++++YA+ G WD +A++R  M
Sbjct: 538 IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGM 597

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCS 701
           ++  VRK PG +W+        F  DD S+  + +IY  L  L + + D GY     F  
Sbjct: 598 KEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVH 657

Query: 702 EEEIVEE 708
            +  VEE
Sbjct: 658 HD--VEE 662



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 220/467 (47%), Gaps = 79/467 (16%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFS------------------LYNN------A 128
           GKQ+H   I LG E   ++   L+  Y+                     +YN       A
Sbjct: 155 GKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLA 214

Query: 129 CFLVENSNIRY------PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
           C ++E++   +       + W+ +I    ++G   EA+  +++M+   ++ D + + SVL
Sbjct: 215 CGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVL 274

Query: 183 KACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
            ACG +  ++ GR +H+CI   + +  ++V +AL+ MY K   +  A+ +FD+M +++ V
Sbjct: 275 PACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 334

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SW  M+  Y   G   EA ++F++MQ  G++ +  T                        
Sbjct: 335 SWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQ--------------------- 373

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
                          + AC+++ +L+ G + HG A+      Y  V N+L+T+Y +C D+
Sbjct: 374 --------------AISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDI 419

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
             +  LF     +  ++W +M+S Y     A E+  LF +M + G++P+ VT+  ++  C
Sbjct: 420 DDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISAC 479

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSVFDLMS-R 475
           +R   ++ G+ +        M NE+ ++     ++ ++++++RSG++ EA    + M  R
Sbjct: 480 SRAGLVEKGQRYF-----ELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFR 534

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
            D + +T+L++    + +G + +  +   +  ++ P H     +LS+
Sbjct: 535 PDAIGWTTLLS--ACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSS 579



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 190/398 (47%), Gaps = 39/398 (9%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+HN +V  Y        ARR+FD + + +  SWN ++ AY+  G   E  + F ++ + 
Sbjct: 39  FLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDR 98

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELL-SRMRTQETYLDSVATVIGLGACSHVGALKL 328
               + +TWN +  G   +G     ++   + M+   + L  V  +  L   S  G + L
Sbjct: 99  ----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSL 154

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSR------------------------------- 357
           GK+IHG  ++  +  Y  V + L+ MYS+                               
Sbjct: 155 GKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLA 214

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           C  +  A  LF+   EK  ++W++M+ G       +E+   FREM   G++ +     S+
Sbjct: 215 CGMIEDALQLFR-GMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSV 273

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP C  +  +  G++ H  I+R  +  +H+ + ++L++MY +   +  AK+VFD M +++
Sbjct: 274 LPACGGLGAINDGRQIHACIIRTNL-QDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKN 332

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V++T+++ GYG  G    A+K+F +M ++ I PDH T+   +SAC++   + EG  QF 
Sbjct: 333 VVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGS-QFH 391

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
                 G+   +     +V LYG+ G ++ +  +  +M
Sbjct: 392 GKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEM 429



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 3/247 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K  A  G   +A E F  ++I     D     F  ++  CG + A+  G+Q+HAC I  
Sbjct: 239 IKGLAQNGMEKEAIECFREMKIEGLKMDQY--PFGSVLPACGGLGAINDGRQIHACIIRT 296

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            L+ +  +   L+  Y      + A  + +    +  + W  ++  Y + G   EA+ ++
Sbjct: 297 NLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIF 356

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
             MQ   I  D++T    + AC  +  ++ G   H   I A     + V N+LV++YGK 
Sbjct: 357 LDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKC 416

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +D + RLF++M  RD VSW  M+SAYA  G   EA QLF +M + G++ + +T   + 
Sbjct: 417 GDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVI 476

Query: 283 GGCLRTG 289
             C R G
Sbjct: 477 SACSRAG 483



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 10/213 (4%)

Query: 49  GRGNLSKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLE 106
           G G   +A EA  +I +      +  D +     I  C  + +L +G Q H  AI  GL 
Sbjct: 342 GYGQTGRAGEA-VKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLI 400

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               +   LVT Y      +++  L    N+R  + W  ++S Y + G   EA+ ++ +M
Sbjct: 401 HYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKM 460

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNA----LVSMYGKF 222
               ++ D  T   V+ AC     V+ G+     +   +E+ +   N     ++ ++ + 
Sbjct: 461 VQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELM--INEYGIVPSNGHYSCMIDLFSRS 518

Query: 223 GQVDVARRLFDKMLER-DAVSWNTMISAYASKG 254
           G+++ A    + M  R DA+ W T++SA  +KG
Sbjct: 519 GRIEEAMGFINGMPFRPDAIGWTTLLSACRNKG 551



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 429 HGKEFHCYILRRAMF----------NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
           H    H Y L R+              +L  WN+L+  Y++SG + E +  F+ +  RD 
Sbjct: 41  HNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDG 100

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
           VT+  LI GY + G    A+K +  M K+       VT++ +L   S +G V  G KQ  
Sbjct: 101 VTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLG-KQIH 159

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
                 G    L   + ++D+Y + G ++ AK++   +    T  M+ TL+G 
Sbjct: 160 GQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNT-VMYNTLMGG 211


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 202/571 (35%), Positives = 307/571 (53%), Gaps = 28/571 (4%)

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
           A  L +    R  + WN ++S Y ++G+  EA  ++ +M  +    ++ ++  +L A   
Sbjct: 49  ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAY-- 102

Query: 188 MMDVDFGRV--VHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
              V  GR+       ++  +W L   N ++  Y K  ++  AR +FD+M ERD VSWNT
Sbjct: 103 ---VQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 159

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           MIS YA  G   EA +LF    EE    +V TW  +  G ++ G       +   M  ++
Sbjct: 160 MISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM-PEK 214

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRH 363
             +   A + G   C     +   +E+  +    C    +NV   N +IT Y++  D+  
Sbjct: 215 NSVSWNAIIAGYVQCKR---MDQARELFEAMP--C----QNVSSWNTMITGYAQNGDIAQ 265

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           A   F    ++  I+W ++++GY      EE+  LF EM R G   N  T  S L  CA 
Sbjct: 266 ARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAE 325

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           +A L+ GK+ H  +++ A       + N+L+ MY + G + +A  VF+ +  ++ V++ +
Sbjct: 326 IAALELGKQVHGRVVK-AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNT 384

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +IAGY   G G+ AL LFE M K  I PD VTMV VLSACSH+GLV +G + F  MT  Y
Sbjct: 385 MIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDY 444

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           GI    +H+ CM+DL GRAG L+ A+ ++  MP+ P +A W  LLGA +IH NT +GE A
Sbjct: 445 GITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKA 504

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
           A+ + E  P+NSG YVL++N+YAA+G W  + ++R  MRD GV+K+PG +WV+  N    
Sbjct: 505 AKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHT 564

Query: 664 FLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           F V D+ + +   IY  L  L   MK  GYV
Sbjct: 565 FTVGDSVHPERDRIYTFLEELDLKMKKEGYV 595



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 202/425 (47%), Gaps = 61/425 (14%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E++ V    +++ YA       A  L E S +R    W  ++S YV++G   EA  V+  
Sbjct: 151 ERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 210

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           M  +    ++ ++ +++    +   +D  R +   +  C   S +  N +++ Y + G +
Sbjct: 211 MPEK----NSVSWNAIIAGYVQCKRMDQARELFEAM-PCQNVSSW--NTMITGYAQNGDI 263

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR  FD+M +RD++SW  +I+ YA  G  +EA  LFVEM+ +G  +N  T+ +     
Sbjct: 264 AQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTST---- 319

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-----GC 340
                                          L  C+ + AL+LGK++HG  V+     GC
Sbjct: 320 -------------------------------LSTCAEIAALELGKQVHGRVVKAGLESGC 348

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           Y     V NAL+ MY +C ++  AYI+F+   EK +++WN+M++GY      +E+  LF 
Sbjct: 349 Y-----VGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFE 403

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M ++G+ P+ VT+  +L  C+    +  G E+   + +      +   +  ++++  R+
Sbjct: 404 SMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRA 463

Query: 461 GKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE---GRVALKLFEEMNKNQIKPDHVTM 516
           G++ +A+++   M    D  T+ +L+    I G    G  A K+  EM     +PD+  M
Sbjct: 464 GRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-----EPDNSGM 518

Query: 517 VAVLS 521
             +LS
Sbjct: 519 YVLLS 523



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 14/237 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C ++ AL  GKQ+H   +  GLE    +   L+  Y      ++A  + E  
Sbjct: 315 TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI 374

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I+ Y R GF  EAL +++ M+   I  D+ T   VL AC     VD G 
Sbjct: 375 EEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG- 433

Query: 196 VVHSCIDACHEWSLFVHNA----LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
                     ++ +  ++     ++ + G+ G++D A+ L   M  E DA +W  ++ A 
Sbjct: 434 -TEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS 492

Query: 250 --YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
             + +  L ++A ++  EM+ +   + V+  N  A     +G +  V  +  RMR +
Sbjct: 493 RIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAA----SGRWGDVGRMRLRMRDR 545


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/553 (32%), Positives = 302/553 (54%), Gaps = 37/553 (6%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           +N++I  +       EA+ ++K+M    ++ D FT+P +LK C  +  +  G  +H+ I 
Sbjct: 92  YNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIM 151

Query: 203 ACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            C   S  FV N L+ MY   G+V+V                               A +
Sbjct: 152 KCGFGSHGFVKNTLIHMYANCGEVEV-------------------------------ARR 180

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F EM E     NV TWN++  G  ++GN++ V++L   M   +   D V  V  L AC 
Sbjct: 181 VFDEMSER----NVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACG 236

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            +  L+LG+ I+             +  +L+ MY++C  +  A  LF     + ++ W++
Sbjct: 237 RLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSA 296

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+SGY+      E+  LF EM ++ ++PN +T+ SIL  CA +  L+ GK  H +I ++ 
Sbjct: 297 MISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKR 356

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           M    + L  +L++ YA+ G V  +  VF  M  ++ +++T LI G    G+G+ AL+ F
Sbjct: 357 M-KLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYF 415

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M +  ++P+ VT + VLSACSH+GLV EG+  F  M+  +GI P++EH+ CMVD+ GR
Sbjct: 416 YLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGR 475

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AGL+ +A + I  MP  P + +W TLL +C++H+N  IGE + ++L+   P +SG Y+L+
Sbjct: 476 AGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILL 535

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+YA+ G W+   KVR  M++ G++K PGC+ ++   V   F  +D  + Q++EIY  +
Sbjct: 536 SNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAI 595

Query: 682 GGLTELMKDAGYV 694
             + + +K AGYV
Sbjct: 596 EDMMKQIKSAGYV 608



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 181/392 (46%), Gaps = 36/392 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  I+  C +++AL++G+Q+HA  +  G   +  +   L+  YA+      A  + +  
Sbjct: 126 TFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEM 185

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R    WN + + Y + G + E + ++ +M    IR D  T  SVL ACG + D++ G 
Sbjct: 186 SERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGE 245

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            ++  ++    + +  +  +LV MY K GQVD ARRLFD+M  RD V+W+ MIS Y+   
Sbjct: 246 WINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQAS 305

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA  LF EMQ+  ++ N IT  +I                                 
Sbjct: 306 RCREALDLFHEMQKANIDPNEITMVSI--------------------------------- 332

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L +C+ +GAL+ GK +H    +        +  AL+  Y++C  +  +  +F     K
Sbjct: 333 --LSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVK 390

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++++W  ++ G       +++   F  M    VEPN VT   +L  C+    +  G++  
Sbjct: 391 NVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLF 450

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
             + R       +  +  +V++  R+G + EA
Sbjct: 451 VSMSRDFGIEPRIEHYGCMVDILGRAGLIEEA 482



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 118/235 (50%), Gaps = 2/235 (0%)

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           + +A  +F+   E     +N M+ G+T      E+  LF+EM  + V+P+  T   IL +
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           C+R+  L  G++ H  I+ +  F  H  + N+L+ MYA  G+V  A+ VFD MS R+  T
Sbjct: 134 CSRLQALSEGEQIHALIM-KCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           + S+ AGY   G     +KLF EM +  I+ D VT+V+VL+AC     +  G+    R  
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGE-WINRYV 251

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
              G+         +VD+Y + G ++ A+ +  +M      A  A + G  Q  R
Sbjct: 252 EEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASR 306


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 203/644 (31%), Positives = 327/644 (50%), Gaps = 49/644 (7%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC--FLVENSNIRYPLPWNLLISLYVR 152
            L A A     +  PV    LV  YA+      A   F       R  +  N +IS Y R
Sbjct: 74  DLPAAATLFRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYAR 133

Query: 153 DGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH---SCIDACHEWS 208
               A A+ V++ +  S  +R D++++ ++L A G + ++          S + +     
Sbjct: 134 ASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGV 193

Query: 209 LFVHNALVSMYGKFGQVDV---ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           L V NALV++Y K   ++    AR++ D+M ++DA++W TM+  Y  +G    A  +F  
Sbjct: 194 LSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVF-- 251

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
            +E  V+ +V+ WN +  G + +G      EL  RM  +   LD       L AC++ G 
Sbjct: 252 -EEVDVKFDVV-WNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGF 309

Query: 326 LKLGKEIHGSAVRGCYGEYEN----VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
              GK +HG   R            V NAL+T+YS+C ++  A  +F     K +++WN+
Sbjct: 310 FAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNT 369

Query: 382 MLSGYTHLDC-------------------------------AEESAFLFREMFRSGVEPN 410
           +LSGY    C                               +E++  LF  M    V+P 
Sbjct: 370 ILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPC 429

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             T A  +  C  + +L+HGK+ H ++++   F       N+L+ MYAR G V EA  +F
Sbjct: 430 DYTYAGAISACGELGSLKHGKQLHGHLVQLG-FEGSNSAGNALITMYARCGAVKEANLMF 488

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
            +M   D V++ ++I+  G  G GR AL+LF+ M    I PD ++ + VL+AC+HSGLV 
Sbjct: 489 LVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVD 548

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           EG + FE M   +GI P  +H+  ++DL GRAG + +A+++I  MP+ PT ++W  +L  
Sbjct: 549 EGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSG 608

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           C+   +  +G  AA++L +  P++ G Y+L++N Y+A G W   A+VR  MRD GV+K P
Sbjct: 609 CRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEP 668

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           GC+W++AGN    F+V DT + +A ++Y  L  +   M+  GYV
Sbjct: 669 GCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYV 712



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 119/279 (42%), Gaps = 46/279 (16%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G + +AFE F R+ +     D    +F  ++  C      A GK +H     L     P 
Sbjct: 273 GMVVEAFELFRRMVLERVPLDEF--TFTSVLSACANAGFFAHGKSVHGQITRL----QPN 326

Query: 111 LVPK--------LVTFYASFSLYNNACFLVENSNIRYPLPWNLL---------------- 146
            VP+        LVT Y+       A  + +N   +  + WN +                
Sbjct: 327 FVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 147 ---------------ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
                          +S YV  GF  +AL ++ +M++  ++  ++TY   + ACGE+  +
Sbjct: 387 FEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSL 446

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ +H   +    E S    NAL++MY + G V  A  +F  M   D+VSWN MISA 
Sbjct: 447 KHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISAL 506

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
              G  +EA +LF  M  EG+  + I++ T+   C  +G
Sbjct: 507 GQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSG 545



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 48/269 (17%)

Query: 9   ILNG-LSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITA 67
           IL+G +  S L+K +    + P  NE    ++ +  +  +   G    A + F R+R   
Sbjct: 370 ILSGYVESSCLDKAVEVFEEMPYKNE----LSWMVMVSGYVHGGFSEDALKLFNRMR--- 422

Query: 68  ASHDV-VLD-SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125
            + DV   D ++A  I  CG++ +L  GKQLH   + LG E +      L+T YA     
Sbjct: 423 -AEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYAR---- 477

Query: 126 NNACFLVENSNIRY-------PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
              C  V+ +N+ +        + WN +IS   + G   EAL ++ +M +  I  D  ++
Sbjct: 478 ---CGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISF 534

Query: 179 PSVLKACG------------EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
            +VL AC             E M  DFG      I     ++      L+ + G+ G++ 
Sbjct: 535 LTVLTACNHSGLVDEGFQYFESMKRDFG-----IIPGEDHYT-----RLIDLLGRAGRIG 584

Query: 227 VARRLFDKM-LERDAVSWNTMISAYASKG 254
            AR L   M  E     W  ++S   + G
Sbjct: 585 EARDLIKTMPFEPTPSIWEAILSGCRTSG 613


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 195/635 (30%), Positives = 335/635 (52%), Gaps = 39/635 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A +   C  + A   G QLH  A+      + ++    +  YA      +A + V N+
Sbjct: 241 TYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDA-WKVFNT 299

Query: 136 NIRYP-LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
               P   +N +I  Y R     +AL +++ +Q   +  D  +    L AC  +     G
Sbjct: 300 LPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEG 359

Query: 195 RVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             +H     C   +++ V N ++ MYGK G +  A  +F++M  RDAVSWN +I+A+   
Sbjct: 360 IQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQN 419

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
               +   LFV M    +E +  T+ ++                                
Sbjct: 420 EEIVKTLSLFVSMLRSTMEPDDFTYGSV-------------------------------- 447

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              + AC+   AL  G EIHG  ++   G    V +AL+ MY +C  L  A  +     E
Sbjct: 448 ---VKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEE 504

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K+ ++WNS++SG++    +E +   F +M   G+ P+  T A++L +CA +A ++ GK+ 
Sbjct: 505 KTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQI 564

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  IL+  + ++ + + ++LV+MY++ G + +++ +F+   +RD VT++++I  Y   G 
Sbjct: 565 HAQILKLQLHSD-VYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGL 623

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  A+ LFEEM    +KP+H   ++VL AC+H G V +G   F++M S YG+ PQ+EH++
Sbjct: 624 GEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYS 683

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVDL GR+G +N+A ++I  MP+     +W TLL  C++  N  + E A   LL+  P+
Sbjct: 684 CMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQ 743

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           +S  YVL+AN+YA  G W ++AK+R+ M++  ++K PGC+W++  +    FLV D ++ +
Sbjct: 744 DSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPR 803

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           ++EIY     L + MK AGYV   +F  +EE+ E+
Sbjct: 804 SEEIYEQTHLLVDEMKWAGYVPDIDFMLDEEMEEQ 838



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 147/593 (24%), Positives = 275/593 (46%), Gaps = 89/593 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN--------- 126
           +F+HI+  C  +KAL  GKQ+H   I  G      +   L+ FY   S  N         
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 127 -------------------NACF---LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
                              N  F   L ++   R  + WN L+S Y+ +G   +++ ++ 
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M+S +I  D  T+  +LKAC  + D   G  VH   I    E  +   +ALV MY K  
Sbjct: 128 RMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++D A R+F +M ER+ V W+ +I+ Y     + E  +LF +M + G+ V          
Sbjct: 188 KLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGV---------- 237

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                              +Q TY    A+V    +C+ + A KLG ++HG A++  +  
Sbjct: 238 -------------------SQSTY----ASV--FRSCAGLSAFKLGTQLHGHALKSDFAY 272

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              +  A + MY++C+ +  A+ +F         ++N+++ GY   D   ++  +F+ + 
Sbjct: 273 DSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQ 332

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGK 462
           R+ +  + ++++  L  C+ +     G + H   ++  + FN  + + N++++MY + G 
Sbjct: 333 RNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFN--ICVANTILDMYGKCGA 390

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + EA  +F+ M RRD V++ ++IA +    E    L LF  M ++ ++PD  T  +V+ A
Sbjct: 391 LMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKA 450

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQ----LEHF--ACMVDLYGRAGLLNKAKEIITKMP 576
           C+       GQ+     T I+G   +    L+ F  + +VD+YG+ G+L +A++I  ++ 
Sbjct: 451 CA-------GQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLE 503

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR--PENSGYYVLI---ANM 624
              T+  W +++      + +   +    ++LE    P+N  Y  ++   ANM
Sbjct: 504 -EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANM 555



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 211/401 (52%), Gaps = 7/401 (1%)

Query: 176 FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            T+  +L+ C  +  ++ G+ VH+  I      +++V N L+  Y K  +++ A ++FD+
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M +RD +SWNT+I  YA  G    A  LF  M E     +V++WN++    L  G  +  
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPER----DVVSWNSLLSCYLHNGVNRKS 122

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           +E+  RMR+ +   D     + L ACS +    LG ++H  A++  +       +AL+ M
Sbjct: 123 IEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM 182

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           YS+CK L  A+ +F+   E++++ W+++++GY   D   E   LF++M + G+  +  T 
Sbjct: 183 YSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTY 242

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           AS+   CA ++  + G + H + L ++ F    ++  + ++MYA+  ++ +A  VF+ + 
Sbjct: 243 ASVFRSCAGLSAFKLGTQLHGHAL-KSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLP 301

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
                +Y ++I GY  Q +G  AL +F+ + +N +  D +++   L+ACS     +EG  
Sbjct: 302 NPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEG-I 360

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           Q   +    G+   +     ++D+YG+ G L +A  I  +M
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEM 401



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 219/469 (46%), Gaps = 41/469 (8%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA + F  ++      D +  S +  +  C  +K   +G QLH  A+  GL  N  +   
Sbjct: 323 KALDIFQSLQRNNLGFDEI--SLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANT 380

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           ++  Y        AC + E    R  + WN +I+ + ++    + L ++  M    +  D
Sbjct: 381 ILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPD 440

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           +FTY SV+KAC     +++G  +H   I +      FV +ALV MYGK G +  A ++  
Sbjct: 441 DFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHA 500

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           ++ E+  VSWN++IS ++S+   + A + F +M E G+  +  T+ T+            
Sbjct: 501 RLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATV------------ 548

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                                  L  C+++  ++LGK+IH   ++        + + L+ 
Sbjct: 549 -----------------------LDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVD 585

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MYS+C +++ + ++F+   ++  +TW++M+  Y +    E++  LF EM    V+PN+  
Sbjct: 586 MYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTI 645

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S+L  CA +  +  G  +   +L     +  +  ++ +V++  RSG+V EA  + + M
Sbjct: 646 FISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESM 705

Query: 474 S-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
               D+V + +L++   +QG   VA K F  +   Q+ P   +   +L+
Sbjct: 706 PFEADDVIWRTLLSNCKMQGNVEVAEKAFNSL--LQLDPQDSSAYVLLA 752



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/585 (23%), Positives = 257/585 (43%), Gaps = 50/585 (8%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           K+ E F R+R     HD    +FA I+  C  ++    G Q+H  AI +G E + V    
Sbjct: 121 KSIEIFVRMRSLKIPHDYA--TFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSA 178

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV  Y+     ++A  +      R  + W+ +I+ YV++  + E L ++K M    +   
Sbjct: 179 LVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVS 238

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
             TY SV ++C  +     G  +H   + +   +   +  A + MY K  ++  A ++F+
Sbjct: 239 QSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFN 298

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
            +      S+N +I  YA               Q++G++                     
Sbjct: 299 TLPNPPRQSYNAIIVGYAR--------------QDQGLK--------------------- 323

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
            L++   ++      D ++    L ACS +     G ++HG AV+   G    V N ++ 
Sbjct: 324 ALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILD 383

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY +C  L  A ++F+    +  ++WN++++ +   +   ++  LF  M RS +EP+  T
Sbjct: 384 MYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFT 443

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S++  CA    L +G E H  I++  M      + ++LV+MY + G + EA+ +   +
Sbjct: 444 YGSVVKACAGQQALNYGTEIHGRIIKSGM-GLDWFVGSALVDMYGKCGMLMEAEKIHARL 502

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             +  V++ S+I+G+  Q +   A + F +M +  I PD+ T   VL  C++    +E  
Sbjct: 503 EEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMA-TIELG 561

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           KQ         +   +   + +VD+Y + G +  ++ +  K P       W+ ++ A   
Sbjct: 562 KQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP-KRDYVTWSAMICAYAY 620

Query: 594 HRNTGIGEWAAE-----KLLETRPENSGYYVLIANMYAATGCWDK 633
           H   G+GE A       +LL  +P N   ++ +    A  G  DK
Sbjct: 621 H---GLGEKAINLFEEMQLLNVKP-NHTIFISVLRACAHMGYVDK 661


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 215/662 (32%), Positives = 341/662 (51%), Gaps = 47/662 (7%)

Query: 35  IMRINLLETLKDFAGRGNLSKAFEAFTRIRI-TAASHDVVLDSFAHIIFCCGKVKALAQG 93
           I   N+L  ++ F+   + S +   +T +R  T  S D    +FA  +  C   K L   
Sbjct: 75  IFLFNVL--VRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFA--VAACSNDKHLML- 129

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
             LHA +I  G   N  +   LV  Y  FS    A  + +    R  + WN +I+  V++
Sbjct: 130 --LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKN 187

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVH 212
             + +++ ++++M +  +R D+ T  +VL A  E+ ++  G  +    +     +  +V 
Sbjct: 188 CCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVL 247

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
             L+S+Y K G V+ AR LF ++   D +++N MIS + + G  + + +LF E+   G  
Sbjct: 248 TGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGER 307

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC-SHVGALKLGKE 331
           V                                    S +T++GL    S  G L L   
Sbjct: 308 V------------------------------------SSSTIVGLIPLHSPFGHLHLACS 331

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IHG  V+        V  A   +Y++  ++  A  LF  + EK+++ WN+M+SGYT    
Sbjct: 332 IHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGS 391

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
            E +  LF+EM ++   PN VTI +IL  CA++ +L  GK  H ++++      ++ +  
Sbjct: 392 TETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVH-HLIKSENLEPNIYVST 450

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +LV+MYA+ G + EA  +FD MS ++ VT+ ++I GYG+ G G  ALKL+ EM      P
Sbjct: 451 ALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNP 510

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
             VT ++VL ACSH+GLV EG++ F  M + Y I P +EH+ACMVD+ GR+G L KA E 
Sbjct: 511 SAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEF 570

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I KMP  P  A+W TLLGAC IH++T I   A+E+L E  P + GYYVL++N+Y+    +
Sbjct: 571 IKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNF 630

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
            K A +R  ++   + K PGC  ++       F+  D S+  A +IY  L  LT  M++ 
Sbjct: 631 PKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREM 690

Query: 692 GY 693
           GY
Sbjct: 691 GY 692



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 230/515 (44%), Gaps = 51/515 (9%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           K        Q HA  I  G   +   + KL      FS   +A  L        P P   
Sbjct: 21  KASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALF----FSVPKPDIF 76

Query: 146 LISLYVRDGFY-----AEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           L ++ VR GF      + ++ +Y  ++ +  +  DNFTY   + AC     +      HS
Sbjct: 77  LFNVLVR-GFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHA-HS 134

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            ID  +  ++FV +ALV +Y KF +V  AR++FD M ERD V WNTMI+       + ++
Sbjct: 135 IIDG-YGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDS 193

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            QLF EM  +GV V                                   DS      L A
Sbjct: 194 IQLFREMVADGVRV-----------------------------------DSSTVTAVLPA 218

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
            + +  LK+G  I   A++  +G  + V   LI++YS+C D+  A +LF+      +I +
Sbjct: 219 AAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAY 278

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+SG+T     E S  LFRE+  SG   +  TI  ++PL +   +L      H + ++
Sbjct: 279 NAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVK 338

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             +   +  +  +   +Y +  ++  A+ +FD    +  V + ++I+GY   G    A+ 
Sbjct: 339 SGII-LNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAIS 397

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           LF+EM K +  P+ VT+  +LSAC+  G +  G K    +     + P +     +VD+Y
Sbjct: 398 LFKEMMKTEFTPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMY 456

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            + G +++A ++   M    T   W T++    +H
Sbjct: 457 AKCGNISEAWQLFDSMSEKNT-VTWNTMIFGYGLH 490


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 193/637 (30%), Positives = 319/637 (50%), Gaps = 44/637 (6%)

Query: 76   SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
            +F H++  C    A A GK +H   +  G++ N  L   L+  Y        A  + E +
Sbjct: 433  TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492

Query: 136  NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
              R  + WN +I+ + + G Y  A  ++++MQ+  +  DN T+ SVL  C     ++ G+
Sbjct: 493  QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK 552

Query: 196  VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
             +H  I ++  +  + + NAL++MY + G +  AR +F  +  RD               
Sbjct: 553  QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRD--------------- 597

Query: 255  LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE-TYLDSVAT 313
                                V++W  + GGC   G     +EL  +M+ +    + S  +
Sbjct: 598  --------------------VMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFS 637

Query: 314  VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
             I L  C+    L  GK++    +   Y     V NALI+ YS+   +  A  +F     
Sbjct: 638  SI-LKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPS 696

Query: 374  KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
            + I++WN +++GY      + +     +M    V PN  +  S+L  C+  + L+ GK  
Sbjct: 697  RDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRV 756

Query: 434  HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
            H  I++R +  + + +  +L+ MYA+ G   EA+ VFD +  ++ VT+ ++I  Y   G 
Sbjct: 757  HAEIVKRKLQGD-VRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGL 815

Query: 494  GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
               AL  F  M K  IKPD  T  ++LSAC+H+GLV+EG + F  M S YG+ P +EH+ 
Sbjct: 816  ASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYG 875

Query: 554  CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
            C+V L GRA    +A+ +I +MP+ P +A+W TLLGAC+IH N  + E AA   L+    
Sbjct: 876  CLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNAR 935

Query: 614  NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
            N   Y+L++N+YAA G WD +AK+R  M   G+RK PG +W++  N+   F+  D S+ +
Sbjct: 936  NPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPE 995

Query: 674  AQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEIG 710
              EIY  L  L+  M++AGY     F   + ++ ++G
Sbjct: 996  TAEIYAELKRLSVEMEEAGY-----FPDTQHVLHDLG 1027



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 163/584 (27%), Positives = 272/584 (46%), Gaps = 72/584 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C + + L + K++HA  +   +  +  L   L+  Y       +A  + +  
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN LIS Y + GF  +A  ++++MQ+     +  TY S+L AC    +++ G+
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS  I A ++    V N+L+SMYGK G +  AR++F  +  RD VS+NTM+  YA K 
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 255 LWKEAFQLFVEMQ-----------------------------------EEGVEVNVITWN 279
             KE   LF +M                                    EEG+  ++    
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGT 268

Query: 280 TIAGGCLRTGN-------FKGV------------------------LELLSRMRTQETYL 308
            +   C+R G+       FKG                          E   RMR+    L
Sbjct: 269 ALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVAL 328

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           +    +  L ACS   AL+ GK IH       +     + NALI+MY+RC DL  A  LF
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELF 388

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               ++ +I+WN++++GY   +   E+  L+++M   GV+P  VT   +L  CA  +   
Sbjct: 389 YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYA 448

Query: 429 HGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            GK  H  ILR  +  N HL   N+L+ MY R G + EA++VF+    RD +++ S+IAG
Sbjct: 449 DGKMIHEDILRSGIKSNGHLA--NALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAG 506

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           +   G    A KLF+EM   +++PD++T  +VLS C +   +  G++   R+T   G+  
Sbjct: 507 HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE-SGLQL 565

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
            +     ++++Y R G L  A+ +   + +    + W  ++G C
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGC 608



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 151/551 (27%), Positives = 258/551 (46%), Gaps = 45/551 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
            A  G+  +AFE + R+R    S  V L+  ++  I+  C   KAL  GK +H+     G
Sbjct: 305 LAQHGHNVEAFEQYYRMR----SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG 360

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   L++ YA       A  L      R  + WN +I+ Y R     EA+ +YK
Sbjct: 361 HSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYK 420

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           QMQS  ++    T+  +L AC        G+++H  I  +  + +  + NAL++MY + G
Sbjct: 421 QMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCG 480

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +  A+ +F+    RD +SWN+MI+ +A  G ++ A++LF EMQ E +E + IT+ ++  
Sbjct: 481 SLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV-- 538

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                            L  C +  AL+LGK+IHG         
Sbjct: 539 ---------------------------------LSGCKNPEALELGKQIHGRITESGLQL 565

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             N+ NALI MY RC  L+ A  +F     + +++W +M+ G        ++  LF +M 
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
             G  P   T +SIL +C   A L  GK+   YIL    +     + N+L+  Y++SG +
Sbjct: 626 NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSG-YELDTGVGNALISAYSKSGSM 684

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A+ VFD M  RD V++  +IAGY   G G+ A++   +M +  + P+  + V++L+AC
Sbjct: 685 TDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNAC 744

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           S    + EG++    +     +   +   A ++ +Y + G   +A+E+   +        
Sbjct: 745 SSFSALEEGKRVHAEIVK-RKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVT 802

Query: 584 WATLLGACQIH 594
           W  ++ A   H
Sbjct: 803 WNAMINAYAQH 813



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 190/416 (45%), Gaps = 38/416 (9%)

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           V    Q R    +  TY ++L+ C     +   + +H+  ++A     +F+ N L++MY 
Sbjct: 14  VSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYV 73

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K   V  A ++F +M  RD +SWN++IS YA +G  K+AFQLF EMQ  G   N IT+ +
Sbjct: 74  KCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYIS 133

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           I                                   L AC     L+ GK+IH   ++  
Sbjct: 134 I-----------------------------------LTACYSPAELENGKKIHSQIIKAG 158

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           Y     V+N+L++MY +C DL  A  +F   + + ++++N+ML  Y      +E   LF 
Sbjct: 159 YQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFG 218

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M   G+ P+ VT  ++L      + L  GK  H   +   + N  + +  +LV M  R 
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGL-NSDIRVGTALVTMCVRC 277

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G V  AK  F   + RD V Y +LIA     G    A + +  M  + +  +  T +++L
Sbjct: 278 GDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSIL 337

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           +ACS S   +E  K      S  G    ++    ++ +Y R G L KA+E+   MP
Sbjct: 338 NACSTSK-ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 132/265 (49%), Gaps = 3/265 (1%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           A +G   KA E F +++        V  +F+ I+  C     L +GK++ A  +  G E 
Sbjct: 609 ADQGEDMKAIELFWQMQ--NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYEL 666

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           +  +   L++ Y+      +A  + +    R  + WN +I+ Y ++G    A+    QMQ
Sbjct: 667 DTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQ 726

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVD 226
            + +  + F++ S+L AC     ++ G+ VH+  +    +  + V  AL+SMY K G   
Sbjct: 727 EQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQG 786

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A+ +FD ++E++ V+WN MI+AYA  GL  +A   F  M++EG++ +  T+ +I   C 
Sbjct: 787 EAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACN 846

Query: 287 RTGNFKGVLELLSRMRTQETYLDSV 311
             G      ++ S M ++   L ++
Sbjct: 847 HAGLVLEGYQIFSSMESEYGVLPTI 871


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 199/624 (31%), Positives = 323/624 (51%), Gaps = 42/624 (6%)

Query: 72  VVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           ++ D FA+  II  C  + +L  GK +HA  +  G   +  +   L+  YA      ++ 
Sbjct: 163 ILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY 222

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
           ++         + WN +IS    +G + EA  ++ +M++     + +T  SV KA G+++
Sbjct: 223 WVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLV 282

Query: 190 DVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS--WNTM 246
           DV+ G+ V +C      E ++ V  AL+ MY K G +  AR +FD       V+  WN M
Sbjct: 283 DVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAM 342

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           IS Y+  G  +EA +L+V+M + G+  ++ T+ ++                         
Sbjct: 343 ISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSV------------------------- 377

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAY 365
                       A +   +L+ G+ +HG  ++ G      +V NA+   YS+C  L    
Sbjct: 378 ----------FNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVR 427

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F    E+ I++W ++++ Y+     EE+   F  M   G  PN  T +S+L  CA + 
Sbjct: 428 KVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLC 487

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            L++G++ H  +L +A  +    + ++L++MYA+ G + EA  VFD +S  D V++T++I
Sbjct: 488 FLEYGRQVHG-LLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAII 546

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
           +GY   G    AL+LF  M  + IK + VT++ VL ACSH G+V EG   F++M   YG+
Sbjct: 547 SGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGV 606

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
            P++EH+AC++DL GR G L+ A E I KMP  P   +W TLLG C++H N  +GE AA 
Sbjct: 607 VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAAR 666

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
           K+L  RPE S  YVL++N Y  TG ++    +R  M+D GV+K PG +W+        F 
Sbjct: 667 KILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFY 726

Query: 666 VDDTSNVQAQEIYPLLGGLTELMK 689
             D  + Q +EIY  L  L E +K
Sbjct: 727 SGDQQHPQKKEIYVKLEELREKIK 750



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/541 (24%), Positives = 239/541 (44%), Gaps = 50/541 (9%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP--VLVPKLVTFYA 120
           I I+       +     ++  C +  ++ + K +H   +    E     VL       Y+
Sbjct: 53  IGISETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYS 112

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
             S +  AC + +    R    W ++I      G + +    + +M +  I  D F Y +
Sbjct: 113 KCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSA 172

Query: 181 VLKACGEMMDVDFGRVVHSCID----ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           ++++C  +  ++ G++VH+ I     A H   +FV  +L++MY K G ++ +  +F+ M 
Sbjct: 173 IIQSCIGLDSLELGKMVHAQIVMRGFATH---IFVSTSLLNMYAKLGSIEDSYWVFNMMT 229

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           E + VSWN MIS   S GL  EAF LFV M+      N+ T                   
Sbjct: 230 EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYT------------------- 270

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMY 355
                      L SV+  +G      +  + +GKE+   A   G  G    V  ALI MY
Sbjct: 271 -----------LVSVSKAVG-----KLVDVNMGKEVQNCASELGIEGNVL-VGTALIDMY 313

Query: 356 SRCKDLRHAYILFKMTAEKSIIT--WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           S+C  L  A  +F        +   WN+M+SGY+   C++E+  L+ +M ++G+  +  T
Sbjct: 314 SKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYT 373

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S+    A   +LQ G+  H  +L+  +    + + N++ + Y++ G + + + VFD M
Sbjct: 374 YCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRM 433

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             RD V++T+L+  Y     G  AL  F  M +    P+  T  +VL +C+ S   +E  
Sbjct: 434 EERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCA-SLCFLEYG 492

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           +Q   +    G+  +    + ++D+Y + G + +A ++  K+   P    W  ++     
Sbjct: 493 RQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYAQ 551

Query: 594 H 594
           H
Sbjct: 552 H 552



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 219/472 (46%), Gaps = 44/472 (9%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +AF+ F R++  A + ++   +   +    GK+  +  GK++  CA  LG+E N ++   
Sbjct: 251 EAFDLFVRMKNGACTPNMY--TLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTA 308

Query: 115 LVTFYASFSLYNNACFLVENS--NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
           L+  Y+     ++A  + + +  N     PWN +IS Y + G   EAL +Y QM    I 
Sbjct: 309 LIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGIT 368

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC--HEWSLFVHNALVSMYGKFGQVDVARR 230
            D +TY SV  A      + FGRVVH  +  C      + V+NA+   Y K G ++  R+
Sbjct: 369 SDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRK 428

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +FD+M ERD VSW T+++AY+   L +EA   F  M+EEG   N  T++++         
Sbjct: 429 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSV--------- 479

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                                     L +C+ +  L+ G+++HG   +      + + +A
Sbjct: 480 --------------------------LISCASLCFLEYGRQVHGLLCKAGLDTEKCIESA 513

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI MY++C  +  A  +F   +   I++W +++SGY      E++  LFR M  SG++ N
Sbjct: 514 LIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKAN 573

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            VT+  +L  C+    ++ G  +   +         +  +  ++++  R G++ +A    
Sbjct: 574 AVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFI 633

Query: 471 DLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             M    +E+ + +L+ G  +   G V L          I+P++     +LS
Sbjct: 634 RKMPMEPNEMVWQTLLGGCRVH--GNVELGEIAARKILSIRPEYSATYVLLS 683



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 190/445 (42%), Gaps = 59/445 (13%)

Query: 181 VLKACGEMMDVDFGRVVH-----SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           VL+ C E   +   + VH     S  +      LF H A V  Y K  +   A  +FD+M
Sbjct: 70  VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHV--YSKCSEFRAACGVFDEM 127

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
            +R+  SW  MI      GL+ + F+ F EM   G+  +   ++ I   C          
Sbjct: 128 PQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC---------- 177

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                              IGL +      L+LGK +H   V   +  +  V  +L+ MY
Sbjct: 178 -------------------IGLDS------LELGKMVHAQIVMRGFATHIFVSTSLLNMY 212

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++   +  +Y +F M  E + ++WN+M+SG T      E+  LF  M      PN  T+ 
Sbjct: 213 AKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLV 272

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD--LM 473
           S+     ++ ++  GKE         +   ++L+  +L++MY++ G + +A+SVFD   +
Sbjct: 273 SVSKAVGKLVDVNMGKEVQNCASELGI-EGNVLVGTALIDMYSKCGSLHDARSVFDTNFI 331

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           +      + ++I+GY   G  + AL+L+ +M +N I  D  T  +V +A + S  +    
Sbjct: 332 NCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSL---- 387

Query: 534 KQFERMTSIYGIFPQLEHFACMV-----DLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            QF R+     +   L+     V     D Y + G L   +++  +M      + W TL+
Sbjct: 388 -QFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVS-WTTLV 445

Query: 589 GACQIHRNTGIGEWAAEKLLETRPE 613
            A   +  + +GE A       R E
Sbjct: 446 TA---YSQSSLGEEALATFCLMREE 467



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 4/248 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  ++  G   +A E + ++     + D  L ++  +       K+L  G+ +H   +  
Sbjct: 343 ISGYSQSGCSQEALELYVQMCQNGITSD--LYTYCSVFNAIAASKSLQFGRVVHGMVLKC 400

Query: 104 GLEKNPVLVPKLVT-FYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           GL+   V V   +   Y+      +   + +    R  + W  L++ Y +     EAL  
Sbjct: 401 GLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALAT 460

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGK 221
           +  M+      + FT+ SVL +C  +  +++GR VH  +  A  +    + +AL+ MY K
Sbjct: 461 FCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAK 520

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  A ++FDK+   D VSW  +IS YA  GL ++A QLF  M+  G++ N +T   +
Sbjct: 521 CGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCV 580

Query: 282 AGGCLRTG 289
              C   G
Sbjct: 581 LFACSHGG 588


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 191/593 (32%), Positives = 308/593 (51%), Gaps = 41/593 (6%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W +++    R G + EA+     M +       FT  +VL +C        GR V
Sbjct: 21  RDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKV 80

Query: 198 HSCIDACHEWSLF-VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           HS +      S   V N++++MYGK G  + A  +F++M  R   SWN M+S     G  
Sbjct: 81  HSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRM 140

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
             A  LF  M +     ++++WN +  G  + G     L+L SRM  + +      T+  
Sbjct: 141 DLAESLFESMPDR----SIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 196

Query: 317 -LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK---------------- 359
            L AC+++G +++GK++H   +R        V NALI+ Y++                  
Sbjct: 197 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 256

Query: 360 -----------------DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
                            D+  A  +F +   + ++ W +M+ GY      +E+  LFR M
Sbjct: 257 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 316

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              G EPN  T+A++L +CA +A L +GK+ HC  +R ++  +   + N+++ MYARSG 
Sbjct: 317 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIR-SLLEQSSSVSNAIITMYARSGS 375

Query: 463 VPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            P A+ +FD +  R++ +T+TS+I      G+G  A+ LFEEM +  ++PD +T V VLS
Sbjct: 376 FPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLS 435

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSH+G V EG++ ++++ + + I P++ H+ACMVDL  RAGL ++A+E I +MP  P +
Sbjct: 436 ACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDA 495

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
             W +LL AC++H+N  + E AAEKLL   P NSG Y  IAN+Y+A G W   A++    
Sbjct: 496 IAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKAR 555

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           ++  VRK  G +W    +    F  DD  + Q   +Y +   + E +K AG+V
Sbjct: 556 KEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFV 608



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 198/459 (43%), Gaps = 41/459 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +  +++  C   +A A G+++H+  + LGL     +   ++  Y        A  + E  
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 136 NIRYPLPWNLLISL-------------------------------YVRDGFYAEALCVYK 164
            +R    WN ++SL                               Y ++G  A+AL ++ 
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 165 QM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
           +M     +  D FT  SVL AC  + +V  G+ VH+ I      ++  V NAL+S Y K 
Sbjct: 180 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 223 GQVDVARRLFDKMLERD--AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           G V+ ARR+ D+ +E D   +S+  ++  Y   G  + A ++F  M       +V+ W  
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR----DVVAWTA 295

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +  G  + G     ++L   M T     +S      L  C+ +  L  GK+IH  A+R  
Sbjct: 296 MIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL 355

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTA-EKSIITWNSMLSGYTHLDCAEESAFLF 399
             +  +V NA+ITMY+R      A  +F      K  ITW SM+         EE+  LF
Sbjct: 356 LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 415

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            EM R+GVEP+ +T   +L  C+    +  GK ++  I         +  +  +V++ AR
Sbjct: 416 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 475

Query: 460 SGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVA 497
           +G   EA+     M    D + + SL++   +     +A
Sbjct: 476 AGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELA 514



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 191/429 (44%), Gaps = 61/429 (14%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           M+ K G++  AR +F +M ERDAVSW  M+      G + EA +  ++M  +G      T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG--ALKLGKEIHGS 335
              +   C        V +  +  R   +++      +GLG+C  V    L +  +   S
Sbjct: 61  LTNVLSSC-------AVTQAGAVGRKVHSFV----VKLGLGSCVPVANSVLNMYGKCGDS 109

Query: 336 AVRGCYGEYENVR-----NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
                  E   VR     NA++++ +    +  A  LF+   ++SI++WN+M++GY    
Sbjct: 110 ETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 169

Query: 391 CAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLL 448
              ++  LF  M   S + P+  TI S+L  CA + N++ GK+ H YILR  M +N  + 
Sbjct: 170 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT 229

Query: 449 LWNSLVEMYARSGKVPEAKSVFD---------------------------------LMSR 475
             N+L+  YA+SG V  A+ + D                                 +M+ 
Sbjct: 230 --NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 287

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RD V +T++I GY   G    A+ LF  M     +P+  T+ AVLS C+    +  G++ 
Sbjct: 288 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQI 347

Query: 536 FERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
             R  +I  +  Q    +  ++ +Y R+G    A+ +  ++ +   +  W +++ A   H
Sbjct: 348 HCR--AIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 405

Query: 595 RNTGIGEWA 603
              G GE A
Sbjct: 406 ---GQGEEA 411



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 182/462 (39%), Gaps = 121/462 (26%)

Query: 32  NEHIMRINLLETLKD----------------FAGRGNLSKAFEAFTRI--RITAASHDVV 73
           N H+ R++L E+L +                +   G  +KA + F+R+    + A  +  
Sbjct: 134 NTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 193

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
           + S   ++  C  +  +  GKQ+HA  +   +  N  +   L++ YA      NA  +++
Sbjct: 194 ITS---VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMD 250

Query: 134 NS---------------------------------NIRYPLPWNLLISLYVRDGFYAEAL 160
            S                                 N R  + W  +I  Y ++G   EA+
Sbjct: 251 QSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAI 310

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMY 219
            +++ M +     +++T  +VL  C  +  +D+G+ +H   I +  E S  V NA+++MY
Sbjct: 311 DLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMY 370

Query: 220 GKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
            + G    ARR+FD++  R + ++W +MI A A  G  +EA  LF EM   GVE + IT 
Sbjct: 371 ARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRIT- 429

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                       + GV                      L ACSH G +  GK        
Sbjct: 430 ------------YVGV----------------------LSACSHAGFVNEGKRY------ 449

Query: 339 GCYGEYENVRN-----ALITMYSRCKDLRHAYILF--------KMTAEKSIITWNSMLSG 385
                Y+ ++N       ++ Y+   DL     LF        +M  E   I W S+LS 
Sbjct: 450 -----YDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSA 504

Query: 386 YTHLDCAEESAFLFREMFRSGVEPN----YVTIASILPLCAR 423
                 AE +     ++    ++PN    Y  IA++   C R
Sbjct: 505 CRVHKNAELAELAAEKLL--SIDPNNSGAYSAIANVYSACGR 544



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           M+A+SG++ +A+ VF  M  RD V++T ++ G    G    A+K   +M  +   P   T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           +  VLS+C+ +     G+K    +  + G+   +     ++++YG+ G    A  +  +M
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKL-GLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWA-AEKLLETRPENS 615
           P    S+ W  +     +  NT +G    AE L E+ P+ S
Sbjct: 120 PVRSVSS-WNAM-----VSLNTHLGRMDLAESLFESMPDRS 154


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 213/641 (33%), Positives = 322/641 (50%), Gaps = 78/641 (12%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL-VENSNIRYPLP----WNLL 146
           Q KQ+HA  +      +P    KL+T YA  S    +C +  +N   + P P    WN L
Sbjct: 87  QLKQIHAHMLRTSRFCDPYTASKLLTAYAISSC---SCLIYAKNVFNQIPQPNLYCWNTL 143

Query: 147 ISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
           I  Y       ++  ++  M  S     + FT+P + KA   +  +  G V+H   I A 
Sbjct: 144 IRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKAS 203

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
               LF+ N+L++ YG  G  D+A R+F  M  +D VSWN MI+A+A  GL  +A  LF 
Sbjct: 204 LSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQ 263

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           EM+ + V+ NVIT  ++                                   L AC+   
Sbjct: 264 EMEMKDVKPNVITMVSV-----------------------------------LSACAKKI 288

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L+ G+ I        + E+  + NA++ MY +C  +  A  LF   +EK I++W +ML 
Sbjct: 289 DLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLD 348

Query: 385 GYTHLDCAEE--------------------SAF-----------LFREM-FRSGVEPNYV 412
           G+  L   +E                    SA+           LF EM      +P+ V
Sbjct: 349 GHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEV 408

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T+   L   A++  +  G   H YI ++   N +  L  SL++MYA+ G + +A  VF  
Sbjct: 409 TLICALCASAQLGAIDFGHWIHVYI-KKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHA 467

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           + R+D   ++++I    + G+G+ AL LF  M +  IKP+ VT   +L AC+H+GLV EG
Sbjct: 468 VERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEG 527

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           ++ FE+M  +YGI PQ++H+ C+VD++GRAGLL KA   I KMP  PT+A+W  LLGAC 
Sbjct: 528 EQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACS 587

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
            H N  + E A + LLE  P N G +VL++N+YA  G W+K++ +R  MRD  V+K P C
Sbjct: 588 RHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWC 647

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           + +D   +   FLV D S+  +Q+IY  L  ++E  K  GY
Sbjct: 648 SSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGY 688



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 119/492 (24%), Positives = 216/492 (43%), Gaps = 46/492 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +     ++K L  G  LH   I   L  +  ++  L+ FY S    + A  +  N 
Sbjct: 175 TFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNM 234

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I+ +   G   +AL ++++M+ + ++ +  T  SVL AC + +D++FGR
Sbjct: 235 PGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGR 294

Query: 196 VVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            + S I+       L ++NA++ MY K G ++ A+ LF+KM E+D VSW TM+  +A  G
Sbjct: 295 WICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLG 354

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR-TQETYLDSVAT 313
            + EA  +F  M  +        WN +     + G  +  L L   M+ +++   D V  
Sbjct: 355 NYDEAHCIFDAMPHKWTA----AWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTL 410

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           +  L A + +GA+  G  IH    +       ++  +L+ MY++C +L  A  +F     
Sbjct: 411 ICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVER 470

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K +  W++M+         + +  LF  M  + ++PN VT  +IL  C     +  G++ 
Sbjct: 471 KDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQ- 529

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
                          L+  +  +Y   G VP+ +             Y  ++  +G  G 
Sbjct: 530 ---------------LFEQMEPLY---GIVPQIQH------------YVCVVDIFGRAGL 559

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH-- 551
              A    E+M    I P      A+L ACS  G V   +  ++ +  +        H  
Sbjct: 560 LEKAASFIEKM---PIPPTAAVWGALLGACSRHGNVELAELAYQNLLEL----EPCNHGA 612

Query: 552 FACMVDLYGRAG 563
           F  + ++Y +AG
Sbjct: 613 FVLLSNIYAKAG 624


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 330/620 (53%), Gaps = 24/620 (3%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYAS-FSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           G Q+H          + V+   L++ Y S     N+A  + +   IR  + WN +IS+Y 
Sbjct: 221 GVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYS 280

Query: 152 RDGFYAEALCVYKQMQSRRI-----RGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DAC 204
           R G    A  ++  MQ   +       D F+  SVL+          GR VH+ +     
Sbjct: 281 RRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRK-----GREVHAHVIRTGL 335

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           ++  + + N LV+MY K G +  A  +F+ M+E+D+VSWN++IS        ++A ++F 
Sbjct: 336 NDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFS 395

Query: 265 EMQEEGVEVNVITWNTIAGGCLRT-GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            M E     + ++WN++ G    +  +    ++   +M      L  V  +  L A S +
Sbjct: 396 LMPE----YDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSL 451

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSM 382
              ++  +IH   ++ C  +   + NAL++ Y +C ++     +F +M+  +  ++WNSM
Sbjct: 452 SLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSM 511

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH-CYILRRA 441
           +SGY H +   ++  L   M + G   +  T A+IL  CA VA L+ G E H C I  RA
Sbjct: 512 ISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGI--RA 569

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
                +++ ++LV+MY++ G++  A   F+LM  R+  ++ S+I+GY   G G  ALKLF
Sbjct: 570 CLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLF 629

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M  +   PDHVT V VLSACSH G V EG + F+ M+ +Y + P++EHF+CMVDL GR
Sbjct: 630 TRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGR 689

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGAC--QIHRNTGIGEWAAEKLLETRPENSGYYV 619
           AG L++  + I  MP  P   +W T+LGAC     RNT +G  AAE LLE  P+N+  YV
Sbjct: 690 AGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYV 749

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L+ANMYA+   W+ +AK RT M++  V+K  GC+WV   +    F+  D  + +   IY 
Sbjct: 750 LLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYD 809

Query: 680 LLGGLTELMKDAGYVVKEEF 699
            L  L   M+DAGY+ + ++
Sbjct: 810 KLRELNRKMRDAGYIPQTKY 829



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 137/583 (23%), Positives = 243/583 (41%), Gaps = 96/583 (16%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           CC +     + ++LH  +I  G   N  L   L+  Y       +A  L +  + R  + 
Sbjct: 113 CCSE-----EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVT 167

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM--MDVDFGRVVHSC 200
           W  LIS Y ++G   EA   ++ M       +++ + S L+AC E        G  +H  
Sbjct: 168 WACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGL 227

Query: 201 IDACHEWS-LFVHNALVSMYGK-FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
           I      S + V N L+SMYG      + AR +FD +  R+++SWN++IS Y+ +G    
Sbjct: 228 ISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVS 287

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A+ LF  MQ+EG+           G   +  +      +L   R +              
Sbjct: 288 AYDLFSSMQKEGL-----------GFSFKPNDAFSEFSVLEEGRRK-------------- 322

Query: 319 ACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
                     G+E+H   +R G       + N L+ MY++   +  A  +F++  EK  +
Sbjct: 323 ----------GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 372

Query: 378 TWNSMLSGYTHLDCAEESAFLFR--------------------------------EMFRS 405
           +WNS++SG    +C+E++A +F                                 +M R 
Sbjct: 373 SWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRG 432

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G   + VT  +IL   + ++  +   + H  +L+  + ++   + N+L+  Y + G++ E
Sbjct: 433 GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCL-SDDTAIGNALLSCYGKCGEMNE 491

Query: 466 AKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            + +F  MS  RDEV++ S+I+GY        A+ L   M +   + D  T   +LSAC+
Sbjct: 492 CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACA 551

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEH----FACMVDLYGRAGLLNKAKEIITKMPYTPT 580
               +  G +         GI   LE      + +VD+Y + G ++ A      MP    
Sbjct: 552 SVATLERGME-----VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNV 606

Query: 581 SAMWATLLGACQIHRNTGIGEWA----AEKLLETRPENSGYYV 619
            + W +++     H   G GE A       +L+ +P +   +V
Sbjct: 607 YS-WNSMISGYARH---GHGEKALKLFTRMMLDGQPPDHVTFV 645



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 10/221 (4%)

Query: 74  LDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           LDSF  A I+  C  V  L +G ++HAC I   LE + V+   LV  Y+     + A   
Sbjct: 538 LDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRF 597

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            E   +R    WN +IS Y R G   +AL ++ +M       D+ T+  VL AC  +  V
Sbjct: 598 FELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFV 657

Query: 192 DFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMIS 248
           + G      +   +  S  V +   +V + G+ G++D      + M ++ + + W T++ 
Sbjct: 658 EEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLG 717

Query: 249 AYASKG-----LWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           A          L + A ++ +E++ +     V+  N  A G
Sbjct: 718 ACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASG 758


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 210/676 (31%), Positives = 350/676 (51%), Gaps = 52/676 (7%)

Query: 30  INNEHIMRINLLETLKDFAGRGNLSKAFEAFTR-----IRITAASHDVVLDSFAHIIFCC 84
           I N+ I   NLL  + ++A  GN  ++   F +     IR  + +   VL  FA      
Sbjct: 118 ILNDKIFLWNLL--MSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFA----AS 171

Query: 85  GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWN 144
            KV+   + K++H   + LG      +V  L+  Y       +A  L +  + R  + WN
Sbjct: 172 AKVR---ECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWN 228

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
            +IS    +GF    L  + QM +  +  D+ T  +VL AC  + ++  GR +H+  + A
Sbjct: 229 SMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKA 288

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
                +  +N L+ MY K G ++ A                                ++F
Sbjct: 289 GFSGGVMFNNTLLDMYSKCGNLNGAN-------------------------------EVF 317

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           V+M E      +++W +I    +R G     + L   M+++    D  A    + AC+  
Sbjct: 318 VKMGE----TTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACS 373

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
            +L  G+E+H    +   G    V NAL+ MY++C  +  A ++F     K+I++WN+M+
Sbjct: 374 NSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMI 433

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
            GY+      E+  LF +M +  ++P+ VT+A +LP CA +A L+ G+E H +ILR+  F
Sbjct: 434 GGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYF 492

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           ++ L +  +LV+MY + G +  A+ +FD++ ++D + +T +IAGYG+ G G+ A+  FE+
Sbjct: 493 SD-LHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEK 551

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M    I+P+  +  ++L AC+HSGL+ EG K F+ M S   I P+LEH+ACMVDL  R+G
Sbjct: 552 MRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSG 611

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
            L++A + I  MP  P +A+W  LL  C+IH +  + E  AE + E  PEN+ YYVL+AN
Sbjct: 612 NLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLAN 671

Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGG 683
           +YA    W+++ K++  +   G++   GC+W++    F+ F   DTS+ QA+ I  LL  
Sbjct: 672 VYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRK 731

Query: 684 LTELMKDAGYVVKEEF 699
           LT  M   GY  K ++
Sbjct: 732 LTMKMNRGGYSNKIKY 747



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 172/600 (28%), Positives = 288/600 (48%), Gaps = 79/600 (13%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   G+L  A +  +R    +   ++ L+++  ++  C ++K+L  GK++H+   + G+ 
Sbjct: 34  FCEMGDLRNAMKLLSR----SQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMA 89

Query: 107 KNPVLVPKLVTFYASF-----------SLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
            + VL  KLV  Y +             + N+  FL           WNLL+S Y + G 
Sbjct: 90  IDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFL-----------WNLLMSEYAKIGN 138

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-FVHNA 214
           Y E++ ++++MQ   IRGD++T+  VLK       V   + VH  +      S   V N+
Sbjct: 139 YRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNS 198

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L++ Y K G+V+ AR LFD++ +RD VSWN+MIS     G  +   + F++M   GV+V 
Sbjct: 199 LIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDV- 257

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
                                             DS   V  L AC++VG L LG+ +H 
Sbjct: 258 ----------------------------------DSATLVNVLVACANVGNLTLGRALHA 283

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             V+  +       N L+ MYS+C +L  A  +F    E +I++W S+++ +       E
Sbjct: 284 YGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYE 343

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  LF EM   G+ P+   + S++  CA   +L  G+E H +I +  M   +L + N+L+
Sbjct: 344 AIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNM-GSNLPVSNALM 402

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
            MYA+ G + EA  +F  +  ++ V++ ++I GY        AL+LF +M K Q+KPD V
Sbjct: 403 NMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQK-QLKPDDV 461

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC-MVDLYGRAGLLNKAKEIIT 573
           TM  VL AC+    + +G++    +    G F  L H AC +VD+Y + GLL  A+++  
Sbjct: 462 TMACVLPACAGLAALEKGREIHGHILR-KGYFSDL-HVACALVDMYVKCGLLVLAQQLFD 519

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR-----PENSGYYVLIANMYAAT 628
            +P      +W  ++    +H   G G+ A     + R     PE S +  +   +YA T
Sbjct: 520 MIP-KKDMILWTVMIAGYGMH---GFGKEAISTFEKMRVAGIEPEESSFTSI---LYACT 572


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 186/525 (35%), Positives = 289/525 (55%), Gaps = 36/525 (6%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           FV ++L+  Y +FG    AR + D M  R  V W+ +I+A+AS G  + A+ L   M+ +
Sbjct: 56  FVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSD 115

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           GVE NVITWN +  G  R+G  +  +  L RM  +    D+      L A   VG + +G
Sbjct: 116 GVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVG 175

Query: 330 KEIHGSAVR-GC-------------YGEY----ENVR-------------NALITMYSRC 358
           +++HG  V+ GC             YG+     E VR             NAL+   SR 
Sbjct: 176 EQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRN 235

Query: 359 KDLRHAYILFK----MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
             +  A  LF+       E ++++W S+++         E+  LFREM   G+EPN VTI
Sbjct: 236 AQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTI 295

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
             +LP  A +A L HG+  HC+ LR+  F+  + + ++LV+MYA+ G+V +A+ +F+ M 
Sbjct: 296 PCVLPAFANIAALMHGRSAHCFSLRKG-FHHDIYVGSALVDMYAKCGRVRDARMIFEAMP 354

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            R+ V++ ++I GY + GE   A++LF  M  ++ KPD VT   VL ACS +G   EG+ 
Sbjct: 355 YRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRS 414

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            F  M   +GI P++EH+ACMV L GRAG L+ A +II +MP+ P   +W +LLG+C++H
Sbjct: 415 YFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVH 474

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            N  + E AAE L +  PEN+G YVL++N+YA+   WD + ++R  M+ +G++K  GC+W
Sbjct: 475 GNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSW 534

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           ++  N     L  D+S+     I   L  LT  M+  G+    ++
Sbjct: 535 IEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDY 579



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 192/413 (46%), Gaps = 16/413 (3%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + WN L+S   R G   +A+    +M       D       L A G++ DV  G  +H  
Sbjct: 122 ITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGY 181

Query: 201 I-------DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           +       DAC      V  AL+ MYGK G+ D   R+FD+    D  S N +++  +  
Sbjct: 182 VVKAGCRLDAC------VATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRN 235

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
               EA +LF E    G+E+NV++W +I   C++ G     ++L   M+++    +SV  
Sbjct: 236 AQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTI 295

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L A +++ AL  G+  H  ++R  +     V +AL+ MY++C  +R A ++F+    
Sbjct: 296 PCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPY 355

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +++++WN+M+ GY     AE +  LFR M  S  +P+ VT   +L  C++    + G+ +
Sbjct: 356 RNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSY 415

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQG 492
              +  +   +  +  +  +V +  R+GK+ +A  + + M    D   + SL+    + G
Sbjct: 416 FNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHG 475

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
              V L      N  Q++P++     +LS    S  + +G  +   M    G+
Sbjct: 476 N--VVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGL 526



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 38/242 (15%)

Query: 85  GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN-----------------N 127
           G V  +A G+QLH   +  G   +  +   L+  Y      +                 N
Sbjct: 167 GDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCN 226

Query: 128 ACF--LVENSNIRYPL----------------PWNLLISLYVRDGFYAEALCVYKQMQSR 169
           A    L  N+ +   L                 W  +++  V++G   EA+ ++++MQS 
Sbjct: 227 ALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE 286

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVHNALVSMYGKFGQVDV 227
            I  ++ T P VL A   +  +  GR  H  S     H   ++V +ALV MY K G+V  
Sbjct: 287 GIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHH-DIYVGSALVDMYAKCGRVRD 345

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR +F+ M  R+ VSWN MI  YA  G  + A +LF  MQ    + +++T+  + G C +
Sbjct: 346 ARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQ 405

Query: 288 TG 289
            G
Sbjct: 406 AG 407



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           VL +FA+I        AL  G+  H  ++  G   +  +   LV  YA      +A  + 
Sbjct: 298 VLPAFANI-------AALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIF 350

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           E    R  + WN +I  Y   G    A+ +++ MQS + + D  T+  VL AC +    +
Sbjct: 351 EAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTE 410

Query: 193 FGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            GR   + +   H  S  + +   +V++ G+ G++D A  + ++M  E D   W +++ +
Sbjct: 411 EGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGS 470


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  335 bits (859), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 217/657 (33%), Positives = 345/657 (52%), Gaps = 62/657 (9%)

Query: 53  LSKAFEAF-TRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE--KNP 109
           L +AF+ F T +R+      V   SF ++     ++        L+   + LG +   + 
Sbjct: 199 LIEAFKMFRTMMRMGIRPTPV---SFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDF 255

Query: 110 VLVPKLVTFYASFSLYNNA-----CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
            +V   +  YA     + A     C L  N+ +     WN +I  YV++    EA+ ++ 
Sbjct: 256 FVVSSAIFMYAELGCVDFAREIFDCCLERNTEV-----WNTMIGGYVQNNCPIEAIDLFV 310

Query: 165 Q-MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
           Q M+S +   D+ T+ S L A  ++  ++ GR +H+ I  +     + + NA++ MY + 
Sbjct: 311 QVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRC 370

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +  + ++F  MLERD V+WNTM+SA+   GL  E   L   MQ++G  V+ +T     
Sbjct: 371 GSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVT----- 425

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                      +L L S +R+QE                      +GK+ H   +R  +G
Sbjct: 426 --------LTALLSLASNLRSQE----------------------IGKQAHAYLIR--HG 453

Query: 343 -EYENVRNALITMYSRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLF 399
            ++E + + LI MY++   +  A  LF+  +  ++   TWN+M++GYT    +EE   +F
Sbjct: 454 IQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVF 513

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R+M    V PN VT+ASILP C  +  +  GK+ H + + R   N ++ +  +L++MY++
Sbjct: 514 RKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI-RCFLNRNVFVGTALLDMYSK 572

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
           SG +  A++VF     ++ VTYT++I+ YG  G G  AL LF  M  + IKPD VT VA+
Sbjct: 573 SGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAI 632

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYT 578
           LSACS++GLV EG + F+ M   Y I P  EH+ C+ D+ GR G + +A E +  +    
Sbjct: 633 LSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEG 692

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS--GYYVLIANMYAATGCWDKLAK 636
            T  +W +LLGAC+IH    +G+  A KLLE    +S  GY+VL++N+YAA G WD + +
Sbjct: 693 NTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDR 752

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           VR  MR  G+ K  GC+WV+     + F+  D  + Q  EIY +L  L   MKDAGY
Sbjct: 753 VRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGY 809



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 143/554 (25%), Positives = 256/554 (46%), Gaps = 75/554 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF--------SLYN- 126
           +F+  +  C + ++L  GK LH   +      + ++   L+  Y++         + Y+ 
Sbjct: 106 TFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDF 165

Query: 127 NACFLV----ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
           N C LV    +    R  + WN +IS YV+     EA  +++ M    IR    ++ +V 
Sbjct: 166 NNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVF 225

Query: 183 KACGEMMDVD-----FGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
            A   M D D     +G VV    D   ++  FV ++ + MY + G VD AR +FD  LE
Sbjct: 226 PAVWRMSDYDNANVLYGLVVKLGSDFVDDF--FVVSSAIFMYAELGCVDFAREIFDCCLE 283

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           R+   WNTMI  Y       EA  LFV++                               
Sbjct: 284 RNTEVWNTMIGGYVQNNCPIEAIDLFVQV------------------------------- 312

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
              M +++  LD V  +  L A S +  L+LG+++H   ++        + NA+I MYSR
Sbjct: 313 ---MESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSR 369

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           C  +  ++ +F    E+ ++TWN+M+S +      +E   L   M + G   + VT+ ++
Sbjct: 370 CGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTAL 429

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS--R 475
           L L + + + + GK+ H Y++R  +  E +  +  L++MYA+SG +  A+ +F+  S   
Sbjct: 430 LSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSY--LIDMYAKSGLITTAQQLFEKNSDYD 487

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RDE T+ ++IAGY   G       +F +M +  ++P+ VT+ ++L AC+  G +  G++ 
Sbjct: 488 RDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQ- 546

Query: 536 FERMTSIYGI----FPQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
                 I+G     F     F    ++D+Y ++G +  A+ +  +      S  + T++ 
Sbjct: 547 ------IHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAE-TLEKNSVTYTTMIS 599

Query: 590 ACQIHRNTGIGEWA 603
           +   H   G+GE A
Sbjct: 600 SYGQH---GMGERA 610



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 214/476 (44%), Gaps = 75/476 (15%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           WN +I  ++ +    +AL  Y +M+ S   + D++T+ S LKAC +   +  G+ +H  +
Sbjct: 71  WNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHV 130

Query: 202 DACH-EWSLFVHNALVSMYG-------------KFGQVDVARRLFDKMLERDAVSWNTMI 247
              H   S  V+N+L++MY               F   D+ RR+FD M +R+ V+WNTMI
Sbjct: 131 LRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMI 190

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           S Y       EAF++F  M   G+    +++  +     R  ++                
Sbjct: 191 SWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDY---------------- 234

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
            D+   + GL        +KLG +         + +   V ++ I MY+    +  A  +
Sbjct: 235 -DNANVLYGL-------VVKLGSD---------FVDDFFVVSSAIFMYAELGCVDFAREI 277

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVAN 426
           F    E++   WN+M+ GY   +C  E+  LF ++  S     + VT  S L   +++  
Sbjct: 278 FDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQW 337

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L+ G++ H YIL+ +   + ++L N+++ MY+R G +  +  VF  M  RD VT+ ++++
Sbjct: 338 LELGRQLHAYILKSSTILQVVIL-NAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVS 396

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS-----------HSGLVVEGQKQ 535
            +   G     L L   M K     D VT+ A+LS  S           H+ L+  G  Q
Sbjct: 397 AFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQ 455

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK-MPYTPTSAMWATLLGA 590
           FE M S             ++D+Y ++GL+  A+++  K   Y    A W  ++  
Sbjct: 456 FEGMDSY------------LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAG 499



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 159/385 (41%), Gaps = 55/385 (14%)

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G    A  LFD +     V WNT+I  +    +  +A   +                   
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFY------------------- 91

Query: 283 GGCLRTGNFKGVLELLSRMRTQET-YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                           +RMR   +   DS      L AC+   +LKLGK +H   +R  +
Sbjct: 92  ----------------ARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHF 135

Query: 342 GEYENVRNALITMYSRCKD----LRHAYI---------LFKMTAEKSIITWNSMLSGYTH 388
           G    V N+L+ MYS C      L  AY          +F    +++++ WN+M+S Y  
Sbjct: 136 GSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVK 195

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHL 447
            +   E+  +FR M R G+ P  V+  ++ P   R+++  +    +  +++    F +  
Sbjct: 196 TERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDF 255

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV-ALKLF-EEMN 505
            + +S + MYA  G V  A+ +FD    R+   + ++I GY +Q    + A+ LF + M 
Sbjct: 256 FVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGY-VQNNCPIEAIDLFVQVME 314

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
             Q   D VT ++ L+A S    +  G++    +     I  Q+     ++ +Y R G +
Sbjct: 315 SEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTIL-QVVILNAIIVMYSRCGSI 373

Query: 566 NKAKEIITKMPYTPTSAMWATLLGA 590
             + ++ + M        W T++ A
Sbjct: 374 GTSFKVFSNM-LERDVVTWNTMVSA 397


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 211/634 (33%), Positives = 330/634 (52%), Gaps = 44/634 (6%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           +++ Y+     ++ C   +    R  + W  +I  Y   G Y +A+ V   M    I   
Sbjct: 86  VLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPT 145

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFD 233
            FT  +VL +      ++ G+ VHS I       ++ V N+L++MY K G   +A+ +FD
Sbjct: 146 QFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFD 205

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           +M+ RD  SWN MI+ +   G    A   F +M E     +++TWN++  G  + G    
Sbjct: 206 RMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAER----DIVTWNSMISGFNQRGYDLR 261

Query: 294 VLELLSRM-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
            L++ S+M R      D       L AC+++  L +GK+IH   V   +     V NALI
Sbjct: 262 ALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALI 321

Query: 353 TMYSRC---------------KDLR--------HAYI----------LFKMTAEKSIITW 379
           +MYSRC               KDL+          YI          +F    ++ ++ W
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAW 381

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
            +M+ GY       E+  LFR M   G  PN  T+A++L + + +A+L HGK+ H   ++
Sbjct: 382 TAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVK 441

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVAL 498
                  + + N+L+ MYA++G +  A   FDL+   RD V++TS+I      G    AL
Sbjct: 442 SGEIYS-VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LFE M    ++PDH+T V V SAC+H+GLV +G++ F+ M  +  I P L H+ACMVDL
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL 560

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
           +GRAGLL +A+E I KMP  P    W +LL AC++H+N  +G+ AAE+LL   PENSG Y
Sbjct: 561 FGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAY 620

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
             +AN+Y+A G W++ AK+R  M+D  V+K  G +W++  +    F V+D ++ +  EIY
Sbjct: 621 SALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIY 680

Query: 679 PLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
             +  + + +K  GYV          EEE+ E+I
Sbjct: 681 MTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQI 714



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 199/449 (44%), Gaps = 41/449 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +  +++      + +  GK++H+  + LGL  N  +   L+  YA       A F+ +  
Sbjct: 148 TLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM 207

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI------------RG---------- 173
            +R    WN +I+L+++ G    A+  ++QM  R I            RG          
Sbjct: 208 VVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFS 267

Query: 174 ----------DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
                     D FT  SVL AC  +  +  G+ +HS  +    + S  V NAL+SMY + 
Sbjct: 268 KMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC 327

Query: 223 GQVDVARRLFDKMLERDAV--SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           G V+ ARRL ++   +D     +  ++  Y   G   +A  +FV +++     +V+ W  
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR----DVVAWTA 383

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +  G  + G++   + L   M       +S      L   S + +L  GK+IHGSAV+  
Sbjct: 384 MIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG 443

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMT-AEKSIITWNSMLSGYTHLDCAEESAFLF 399
                +V NALITMY++  ++  A   F +   E+  ++W SM+        AEE+  LF
Sbjct: 444 EIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELF 503

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
             M   G+ P+++T   +   C     +  G+++   +         L  +  +V+++ R
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGR 563

Query: 460 SGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
           +G + EA+   + M    D VT+ SL++ 
Sbjct: 564 AGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 120/483 (24%), Positives = 207/483 (42%), Gaps = 83/483 (17%)

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
           +S+++ N L+++Y K G    AR+LFD+M  R A SWNT++SAY+ +G      + F ++
Sbjct: 47  FSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQL 106

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
            +     + ++W T+  G    G +   + ++  M  +            L + +    +
Sbjct: 107 PQR----DSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCM 162

Query: 327 KLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKD------------------------- 360
           + GK++H   V+ G  G   +V N+L+ MY++C D                         
Sbjct: 163 ETGKKVHSFIVKLGLRGNV-SVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIAL 221

Query: 361 ------LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVT 413
                 +  A   F+  AE+ I+TWNSM+SG+        +  +F +M R S + P+  T
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFT 281

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP--------- 464
           +AS+L  CA +  L  GK+ H +I+    F+   ++ N+L+ MY+R G V          
Sbjct: 282 LASVLSACANLEKLCIGKQIHSHIVTTG-FDISGIVLNALISMYSRCGGVETARRLIEQR 340

Query: 465 ------------------------EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
                                   +AK++F  +  RD V +T++I GY   G    A+ L
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINL 400

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F  M     +P+  T+ A+LS  S    +  G KQ        G    +     ++ +Y 
Sbjct: 401 FRSMVGGGQRPNSYTLAAMLSVASSLASLSHG-KQIHGSAVKSGEIYSVSVSNALITMYA 459

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET------RPEN 614
           +AG +  A      +     +  W +++ A   H   G  E A E L ET      RP++
Sbjct: 460 KAGNITSASRAFDLIRCERDTVSWTSMIIALAQH---GHAEEALE-LFETMLMEGLRPDH 515

Query: 615 SGY 617
             Y
Sbjct: 516 ITY 518


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 177/520 (34%), Positives = 302/520 (58%), Gaps = 44/520 (8%)

Query: 180 SVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER 238
           ++LK C  +  ++ G+++H+ + ++     L + N L+++Y K G +  AR+LFD+M  R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           D V+W  +I+ Y+     ++A  L  EM   G++ N  T  ++                 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASL----------------- 122

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKL--GKEIHGSAVRGCYGEYENVRNALITMYS 356
                             L A S VG+  +  G+++HG  +R  Y     V  A++ MY+
Sbjct: 123 ------------------LKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYA 164

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           RC  L  A ++F +   K+ ++WN++++GY      +++  LF  M R  V+P + T +S
Sbjct: 165 RCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSS 224

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW--NSLVEMYARSGKVPEAKSVFDLMS 474
           +L  CA + +L+ GK  H  +++   + E L+ +  N+L++MYA+SG + +AK VFD ++
Sbjct: 225 VLCACASMGSLEQGKWVHALMIK---WGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLA 281

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           +RD V++ S++ GY   G G+VAL+ FEEM + +I P+ +T + VL+ACSH+GL+ EG+ 
Sbjct: 282 KRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRH 341

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            F+ M   Y + PQ+ H+  MVDL GRAG L++A + I++MP  PT+A+W  LLGAC++H
Sbjct: 342 YFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMH 400

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           +N  +G +AAE + E      G +VL+ N+YA  G W+  AKVR  M++ GV+K P C+W
Sbjct: 401 KNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSW 460

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           V+  N    F+ DD ++ Q +EI+ +   +++ +K+ GYV
Sbjct: 461 VEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYV 500



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 180/386 (46%), Gaps = 39/386 (10%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  +  L +GK +HA  +      + V+   L+  YA       A  L +  + R  + W
Sbjct: 25  CTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTW 84

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM--MDVDFGRVVHS-C 200
             LI+ Y +     +AL +  +M    ++ + FT  S+LKA   +   DV  GR +H  C
Sbjct: 85  TALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLC 144

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           +   ++ +++V  A++ MY +   ++ A+ +FD M+ ++ VSWN +I+ YA KG   +AF
Sbjct: 145 LRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAF 204

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            LF  M  E V+    T++++                                   L AC
Sbjct: 205 CLFSNMLRENVKPTHFTYSSV-----------------------------------LCAC 229

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           + +G+L+ GK +H   ++        V N L+ MY++   +  A  +F   A++ +++WN
Sbjct: 230 ASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWN 289

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           SML+GY+     + +   F EM R+ + PN +T   +L  C+    L  G+ +   ++++
Sbjct: 290 SMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYF-DMMKK 348

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEA 466
                 +  + ++V++  R+G +  A
Sbjct: 349 YNVEPQISHYVTMVDLLGRAGHLDRA 374



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 8/207 (3%)

Query: 47  FAGRGNLSKAFEAFTRI--RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG 104
           +A +G   KAF  F+ +       +H     +++ ++  C  + +L QGK +HA  I  G
Sbjct: 194 YARKGQGDKAFCLFSNMLRENVKPTHF----TYSSVLCACASMGSLEQGKWVHALMIKWG 249

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
            +    +   L+  YA      +A  + +    R  + WN +++ Y + G    AL  ++
Sbjct: 250 EKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFE 309

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFG 223
           +M   RI  ++ T+  VL AC     +D GR     +   + E  +  +  +V + G+ G
Sbjct: 310 EMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAG 369

Query: 224 QVDVARRLFDKM-LERDAVSWNTMISA 249
            +D A +   +M ++  A  W  ++ A
Sbjct: 370 HLDRAIQFISEMPIKPTAAVWGALLGA 396


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 193/616 (31%), Positives = 331/616 (53%), Gaps = 38/616 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F ++I   G +     G+ +H   +  G   + V+   LV  YA F+L+ N+  + +  
Sbjct: 109 TFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEM 168

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN +IS + + G   +AL ++ +M+S     ++ +    + AC  ++ ++ G+
Sbjct: 169 PERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGK 228

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  C+    E   +V++ALV MYGK   ++VAR +F KM  +                
Sbjct: 229 EIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRK---------------- 272

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                              +++ WN++  G +  G+ K  +E+L+RM  + T        
Sbjct: 273 -------------------SLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLT 313

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L ACS    L  GK IHG  +R        V  +LI +Y +C +   A  +F  T + 
Sbjct: 314 SILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKD 373

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
              +WN M+S Y  +    ++  ++ +M   GV+P+ VT  S+LP C+++A L+ GK+ H
Sbjct: 374 VAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIH 433

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             I    +  + LLL ++L++MY++ G   EA  +F+ + ++D V++T +I+ YG  G+ 
Sbjct: 434 LSISESRLETDELLL-SALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQP 492

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           R AL  F+EM K  +KPD VT++AVLSAC H+GL+ EG K F +M S YGI P +EH++C
Sbjct: 493 REALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSC 552

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           M+D+ GRAG L +A EII + P T  +A + +TL  AC +H    +G+  A  L+E  P+
Sbjct: 553 MIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPD 612

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           ++  Y+++ N+YA+   WD   +VR  M+++G+RK PGC+W++  +    F  +D S+++
Sbjct: 613 DASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHLR 672

Query: 674 AQEIYPLLGGLTELMK 689
           A+ +Y  L  L+  M+
Sbjct: 673 AENVYECLALLSGHME 688



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 147/515 (28%), Positives = 254/515 (49%), Gaps = 41/515 (7%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL- 141
           C    K+L + K +H   + LGL ++ VL   L+  Y +   + +A  + EN +IR  + 
Sbjct: 13  CTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVY 72

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRI-RGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
            WN L+S Y ++  + + L V+K++ +  I   D+FT+P+V+KA G +     GR++H+ 
Sbjct: 73  IWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTL 132

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            + + +   + V ++LV MY KF   + + ++FD+M ERD  SWNT+IS +   G  ++A
Sbjct: 133 VVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKA 192

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF  M+  G E N                                   SV+  + + A
Sbjct: 193 LELFGRMESSGFEPN-----------------------------------SVSLTVAISA 217

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           CS +  L+ GKEIH   V+  +   E V +AL+ MY +C  L  A  +F+    KS++ W
Sbjct: 218 CSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAW 277

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           NSM+ GY     ++    +   M   G  P+  T+ SIL  C+R  NL HGK  H Y++ 
Sbjct: 278 NSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVI- 336

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
           R++ N  + +  SL+++Y + G+   A++VF    +    ++  +I+ Y   G    A++
Sbjct: 337 RSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVE 396

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           ++++M    +KPD VT  +VL ACS    + +G KQ     S   +       + ++D+Y
Sbjct: 397 VYDQMVSVGVKPDVVTFTSVLPACSQLAALEKG-KQIHLSISESRLETDELLLSALLDMY 455

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            + G   +A  I   +P     + W  ++ A   H
Sbjct: 456 SKCGNEKEAFRIFNSIPKKDVVS-WTVMISAYGSH 489


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 209/649 (32%), Positives = 341/649 (52%), Gaps = 65/649 (10%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           K   L  GKQ+H C    G  +       L+  YA     ++A  L+     R  + WN 
Sbjct: 128 KRDGLWLGKQIHGCCFRKGHWRT-FSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNS 186

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC---ID 202
           +IS + ++  + EAL   + M    ++ D  T+ SVL AC  +  +  G+ +H+     D
Sbjct: 187 MISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTD 246

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              E S FV +ALV MY   GQV+  R +FD +L+R    WN MI+ YA     ++A  L
Sbjct: 247 DVIENS-FVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALML 305

Query: 263 FVEMQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           F+EM+   G+  N  T ++I    +R        E +SR                     
Sbjct: 306 FIEMEAAAGLYSNATTMSSIVPAYVRC-------EGISRK-------------------- 338

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
                   + IHG  ++        ++NALI MYSR  D++ +  +F    ++ I++WN+
Sbjct: 339 --------EGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNT 390

Query: 382 MLSGYTHLDCAEESAFLFREMFR----------------SGVEPNYVTIASILPLCARVA 425
           +++ Y     + ++  L  EM R                   +PN +T+ ++LP CA ++
Sbjct: 391 IITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLS 450

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            L  GKE H Y +R  +    + + ++LV+MYA+ G +  A+ VFD M  R+ +T+  +I
Sbjct: 451 ALAKGKEIHAYAIRN-LLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVII 509

Query: 486 AGYGIQGEGRVALKLFEEM-----NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
             YG+ G+G+ +L+LFE+M        ++KP  VT +A+ ++CSHSG+V EG   F +M 
Sbjct: 510 MAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMK 569

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT-PTSAMWATLLGACQIHRNTGI 599
           + +GI P  +H+AC+VDL GRAG + +A  ++  MP        W++LLGAC+I+ N  I
Sbjct: 570 NEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEI 629

Query: 600 GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659
           GE AAE LL+ +P+ + +YVL++N+Y++ G WDK   +R  M+ +GV+K PGC+W++ G+
Sbjct: 630 GEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGD 689

Query: 660 VFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
               FL  D S+ Q+++++  L  L+E +K  GY V +  C   +I EE
Sbjct: 690 EVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGY-VPDTACVLHDIDEE 737



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 142/542 (26%), Positives = 244/542 (45%), Gaps = 61/542 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEK--NPVLVPKLVTFYASFSLYNNACFLVE 133
           +F  ++     ++ L  GKQ+HA     G     +  +   LV  Y       +A  + +
Sbjct: 12  AFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFD 71

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD- 192
               R  + WN +IS   R   +  A+  ++ M        +FT  S+  AC  +   D 
Sbjct: 72  RITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDG 131

Query: 193 --FGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
              G+ +H C      W  F +NAL++MY K G++D A+ L     +RD V+WN+MIS++
Sbjct: 132 LWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSF 191

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           +    + EA      M  EGV+ + +T+ ++                             
Sbjct: 192 SQNERFMEALMFLRLMVLEGVKPDGVTFASV----------------------------- 222

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFK 369
                 L ACSH+  L+ GKEIH  A+R     E   V +AL+ MY  C  +    ++F 
Sbjct: 223 ------LPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFD 276

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQ 428
              ++ I  WN+M++GY   +  E++  LF EM   +G+  N  T++SI+P   R   + 
Sbjct: 277 SVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGIS 336

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
             +  H Y+++R +   +  L N+L++MY+R G +  +K +FD M  RD V++ ++I  Y
Sbjct: 337 RKEGIHGYVIKRGL-ETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSY 395

Query: 489 GIQGEGRVALKLFEEMNKNQ----------------IKPDHVTMVAVLSACSHSGLVVEG 532
            I G    AL L  EM + +                 KP+ +T++ VL  C+    + +G
Sbjct: 396 VICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKG 455

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            K+         +  Q+   + +VD+Y + G LN A+ +  +MP       W  ++ A  
Sbjct: 456 -KEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNV-ITWNVIIMAYG 513

Query: 593 IH 594
           +H
Sbjct: 514 MH 515



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/411 (30%), Positives = 200/411 (48%), Gaps = 48/411 (11%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           DNF +P+VLKA   + ++  G+ +H+ +         S+ + N LV+MYGK G +  A +
Sbjct: 9   DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYK 68

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +FD++ ERD VSWN++ISA      W+ A + F  M  EG E +  T  ++A  C     
Sbjct: 69  VFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALAC----- 123

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRN 349
                   S +R ++                    L LGK+IHG   R G +  + N  N
Sbjct: 124 --------SNLRKRD-------------------GLWLGKQIHGCCFRKGHWRTFSN--N 154

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ MY++   L  A  L  +  ++ ++TWNSM+S ++  +   E+    R M   GV+P
Sbjct: 155 ALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKP 214

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + VT AS+LP C+ +  L+ GKE H Y LR     E+  + ++LV+MY   G+V   + V
Sbjct: 215 DGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLV 274

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGL 528
           FD +  R    + ++IAGY        AL LF EM     +  +  TM +++ A     +
Sbjct: 275 FDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAY----V 330

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFA----CMVDLYGRAGLLNKAKEIITKM 575
             EG  + E +   Y I   LE        ++D+Y R G +  +K I   M
Sbjct: 331 RCEGISRKEGIHG-YVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSM 380



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN-EHLLLWNSLVEMYARS 460
           M  SG  P+     ++L   A +  L  GK+ H ++ +    +   + + N+LV MY + 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G + +A  VFD ++ RD+V++ S+I+      E  VA+K F  M     +P   T+V++ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 521 SACSH----SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            ACS+     GL +   KQ        G +    + A M  +Y + G L+ AK ++
Sbjct: 121 LACSNLRKRDGLWL--GKQIHGCCFRKGHWRTFSNNALMA-MYAKLGRLDDAKSLL 173



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 43/232 (18%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  + ALA+GK++HA AI   L     +   LV  YA     N A  + +   IR  + W
Sbjct: 446 CASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITW 505

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRG-----DNFTYPSVLKACGEMMDVDFGRVVH 198
           N++I  Y   G   E+L +++ M +   +G        T+ ++  +C     VD G  + 
Sbjct: 506 NVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLF 565

Query: 199 SCIDACH--EWSLFVHNALVSMYGKFGQVDVARRL-------FDKM-------------- 235
             +   H  E +   +  +V + G+ G+V+ A  L       FDK+              
Sbjct: 566 HKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYH 625

Query: 236 --------------LERDAVSWNTMIS-AYASKGLWKEAFQLFVEMQEEGVE 272
                         L+ D  S   ++S  Y+S GLW +A  L   M+  GV+
Sbjct: 626 NIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVK 677


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 190/598 (31%), Positives = 310/598 (51%), Gaps = 39/598 (6%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           V + S   ++  CG  +    G  +H   +  GL+    L   LV  Y  F    ++  +
Sbjct: 211 VNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRV 270

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
                 +  + WN  +  +   GF+ + L +++ M    +   + T  S+L A  ++   
Sbjct: 271 FNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYF 330

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ VH   I    E  +F+ N+L+ MY KFG ++ A  +F+ +  R            
Sbjct: 331 HLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGR------------ 378

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                                  NV++WN +     + G       L+  M+      +S
Sbjct: 379 -----------------------NVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNS 415

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
              V  L ACS V ++K+GK+IH  ++         V NALI +Y++C  L  A  +F  
Sbjct: 416 FTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR 475

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
           + EK  +++N+++ GY+   C  ES  LF++M  +G+E + V+    L  CA ++  + G
Sbjct: 476 S-EKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQG 534

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           KE H  ++RR + N H  L NSL+++Y + G +  A  +F+ ++R+D  ++ ++I GYG+
Sbjct: 535 KEIHGVLVRR-LLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGM 593

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G+  VA +LF+ M  + +  DHV+ +AVLSACSH GLV  G+K F +M +   I PQ  
Sbjct: 594 HGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIA-QNIKPQQM 652

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ACMVDL GRAG L+++ EIIT MP+   S +W  LLG+C+IH +  +   AAE L E 
Sbjct: 653 HYACMVDLLGRAGQLSESVEIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFEL 712

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           +PE+SGYY L+ NMY+ +G W++  +++T M+   V+K P  +WV +GN    FLV D
Sbjct: 713 KPEHSGYYTLLRNMYSESGMWNEANEIKTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 770



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 252/507 (49%), Gaps = 43/507 (8%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           A+G +LHA A+  GL    V     LVTFYA+     +A  + +    R  + WN L+S 
Sbjct: 128 AKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSA 187

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWS 208
            + +G   +A      M    I  +  +  SV+ ACG   D  FG  VH  +  +  +  
Sbjct: 188 LLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSV 247

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           + + NALV MYGKFG ++ + R+F+ M E++ VSWN+ +  +A  G  ++  ++F  M E
Sbjct: 248 VNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSE 307

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
             V    +T +++                                   L A   +G   L
Sbjct: 308 HEVTPGSVTLSSL-----------------------------------LPALVDLGYFHL 332

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GKE+HG ++R        + N+L+ MY++   L  A  +F+    +++++WN+M++    
Sbjct: 333 GKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQ 392

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
                E+  L  EM ++G  PN  T+ ++LP C+RVA+++ GK+ H + + R++ ++ L 
Sbjct: 393 NGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSD-LF 451

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           + N+L+++YA+ G++  A+ +FD  S +D+V+Y +LI GY        +L LF++M    
Sbjct: 452 VSNALIDVYAKCGQLSVAQDIFD-RSEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAG 510

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMT-SIYGIFPQLEHFACMVDLYGRAGLLNK 567
           I+ D V+ +  LSAC++     +G++    +   +    P L +   ++DLY + G+L  
Sbjct: 511 IEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLAN--SLLDLYTKGGMLAT 568

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIH 594
           A +I  ++      A W T++    +H
Sbjct: 569 ASKIFNRITRKDV-ASWNTMILGYGMH 594



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 224/491 (45%), Gaps = 47/491 (9%)

Query: 94  KQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENS--NIRYPLPWNLLISLY 150
           ++ HA ++  G L  +  L   L+  YA+     +A  ++ +    +R    WN L    
Sbjct: 22  RRAHAASLVSGALTASLPLAGALLLSYAALRDIPSARLILRHHPLRLRSAFLWNSLSRAL 81

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF-----GRVVHSCI--DA 203
              G  +EAL VY  M    +R D+ T+P  L A    +  +      G  +H+      
Sbjct: 82  ASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAEHPAKGAELHAAALRRG 141

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
                +F  N LV+ Y   G+   ARR+FD+M  RD VSWN+++SA  + G+ ++A +  
Sbjct: 142 LLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRAV 201

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           V M   G+ VNV +  ++   C  T   +G                              
Sbjct: 202 VGMMRSGIPVNVASLVSVVPAC-GTERDEG------------------------------ 230

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
                G  +HG  ++       N+ NAL+ MY +  DL  +  +F    EK+ ++WNS L
Sbjct: 231 ----FGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSAL 286

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
             + H    E+   +FR M    V P  VT++S+LP    +     GKE H Y +RRAM 
Sbjct: 287 GCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAME 346

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           ++ + + NSL++MYA+ G + +A ++F+ +  R+ V++ ++IA     G    A  L  E
Sbjct: 347 SD-IFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIE 405

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M KN   P+  T+V +L ACS    V  G KQ    +    +   L     ++D+Y + G
Sbjct: 406 MQKNGECPNSFTLVNLLPACSRVASVKMG-KQIHAWSIHRSLMSDLFVSNALIDVYAKCG 464

Query: 564 LLNKAKEIITK 574
            L+ A++I  +
Sbjct: 465 QLSVAQDIFDR 475



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 116/282 (41%), Gaps = 20/282 (7%)

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK--SIITWNSM 382
           +L L +    S V G       +  AL+  Y+  +D+  A ++ +    +  S   WNS+
Sbjct: 18  SLLLRRAHAASLVSGALTASLPLAGALLLSYAALRDIPSARLILRHHPLRLRSAFLWNSL 77

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL-----PLCARVANLQHGKEFHCYI 437
                      E+  ++  M RSGV P+  T    L      + A   +   G E H   
Sbjct: 78  SRALASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAEHPAKGAELHAAA 137

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           LRR +    +   N+LV  YA  G+  +A+ VFD M  RD V++ SL++     G    A
Sbjct: 138 LRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDA 197

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHS-----GLVVEGQKQFERMTSIYGIFPQLEHF 552
            +    M ++ I  +  ++V+V+ AC        GL V G      + S+  +   L   
Sbjct: 198 KRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNAL--- 254

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
              VD+YG+ G L  +  +   M        W + LG C  H
Sbjct: 255 ---VDMYGKFGDLESSMRVFNGMQ-EKNEVSWNSALG-CFAH 291


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 191/611 (31%), Positives = 326/611 (53%), Gaps = 36/611 (5%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C +   +  G ++H  A+ LGL ++  +   LV  Y+       A  L + +N +  + W
Sbjct: 144 CAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSW 203

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           N +I      G+  EA  ++++MQ +  I  +  T  ++L AC E+  +         + 
Sbjct: 204 NTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL-------RSLK 256

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
             H +S+                   R  F    + D +  N  ++AYA  G+   A ++
Sbjct: 257 ELHGYSI-------------------RHGF----QYDELVANGFVAAYAKCGMLICAERV 293

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M+ + V     +WN + GGC + G+ +  L L  +M       D       L A +H
Sbjct: 294 FYSMETKTVN----SWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           + +L+ GKE+HG  +R        +  +L+++Y  C +   A +LF    EKS ++WN+M
Sbjct: 350 LKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAM 409

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SGY+     E++  LFR++   G +P+ + + S+L  C++ + L+ GKE HCY L+ A+
Sbjct: 410 ISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALK-AL 468

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
             E + +  S ++MYA+SG + E++SVFD +  +D  ++ ++IA YG+ G+G  +++LFE
Sbjct: 469 LMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFE 528

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M K    PD  T + +L+ CSH+GLV EG K F  M + +GI P+LEH+AC++D+ GRA
Sbjct: 529 RMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRA 588

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G L+ A  ++ +MP  P S +W++LL  C+      IG+  AEKLLE  P+N   YV ++
Sbjct: 589 GRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLS 648

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+YA +G WD + +VR  ++D+G++K  GC+W++ G     F+  D    Q++E+     
Sbjct: 649 NLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWR 708

Query: 683 GLTELMKDAGY 693
            L + M   GY
Sbjct: 709 KLEKKMCKIGY 719



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 148/557 (26%), Positives = 260/557 (46%), Gaps = 48/557 (8%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           S A + F ++ IT    +    +F  +I  C        G+ +H   I +GL  +  +  
Sbjct: 12  SDAIDMFVKL-ITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGN 70

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS--RRI 171
            L+  Y  F   + A  +     +R  + WN +IS +  +GF  +   +  +M +    +
Sbjct: 71  ALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGL 130

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
             D  T  +VL  C   +DV  G  +H   +       + V+N+LV MY K G +  A+ 
Sbjct: 131 LPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQM 190

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ-EEGVEVNVITWNTIAGGCLRTG 289
           LFDK   ++AVSWNTMI    +KG   EAF LF EMQ +E +EVN +T            
Sbjct: 191 LFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVT------------ 238

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
               VL +L                    AC  +  L+  KE+HG ++R  +   E V N
Sbjct: 239 ----VLNILP-------------------ACLEISQLRSLKELHGYSIRHGFQYDELVAN 275

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
             +  Y++C  L  A  +F     K++ +WN+++ G        ++  L+ +M  SG+ P
Sbjct: 276 GFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVP 335

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           ++ TI S+L   A + +L++GKE H ++LR  +  +   +  SL+ +Y   G+   A+ +
Sbjct: 336 DWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDS-FIGISLLSLYIHCGESSSARLL 394

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           FD M  +  V++ ++I+GY   G    AL LF ++  +  +P  + +V+VL ACS    +
Sbjct: 395 FDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSAL 454

Query: 530 VEGQKQFERMTSIYGIFPQLEHFAC-MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
             G++      ++  +  +    AC  +D+Y ++G + +++ +   +      A W  ++
Sbjct: 455 RLGKET--HCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNAII 511

Query: 589 GACQIHRNTGIGEWAAE 605
            A  +H   G GE + E
Sbjct: 512 AAYGVH---GDGEESIE 525



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 149/520 (28%), Positives = 238/520 (45%), Gaps = 79/520 (15%)

Query: 152 RDGFYAEALCVY-KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSL 209
           R+  Y++A+ ++ K +       DNFT+P V+KAC   +D   G V+H   I       +
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           FV NAL++MYGKFG VD A ++F  M  R+ VSWN++IS ++  G  K+ F + VEM   
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEM--- 123

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKL 328
                                          M  +E  L  +AT++  L  C+    +++
Sbjct: 124 -------------------------------MAGEEGLLPDIATLVTVLPVCAREVDVQM 152

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G  IHG AV+    E   V N+L+ MYS+C  L  A +LF     K+ ++WN+M+ G   
Sbjct: 153 GIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCT 212

Query: 389 LDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                E+  LFREM  +  +E N VT+ +ILP C  ++ L+  KE H Y +R   F    
Sbjct: 213 KGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHG-FQYDE 271

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
           L+ N  V  YA+ G +  A+ VF  M  +   ++ +LI G    G+ R AL L+ +M  +
Sbjct: 272 LVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYS 331

Query: 508 QIKPDHVTMVAVLSACSH----------SGLVVEGQKQFERM---------------TSI 542
            + PD  T+ ++L A +H           G V+    + +                 +S 
Sbjct: 332 GLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSA 391

Query: 543 YGIFPQLEH-----FACMVDLYGRAGLLNKAKEIITKM---PYTPTSAMWATLLGACQIH 594
             +F  +E      +  M+  Y + GL   A  +  K+    + P+     ++LGAC   
Sbjct: 392 RLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQ 451

Query: 595 RNTGIGE----WAAEKLLETRPENSGYYVLIANMYAATGC 630
               +G+    +A + LL    E+        +MYA +GC
Sbjct: 452 SALRLGKETHCYALKALL---MEDVFVACSTIDMYAKSGC 488



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 220/518 (42%), Gaps = 74/518 (14%)

Query: 57  FEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           FEAF   R      D+ ++  +  +I+  C ++  L   K+LH  +I  G + + ++   
Sbjct: 217 FEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANG 276

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
            V  YA   +   A  +  +   +    WN LI    ++G   +AL +Y QM    +  D
Sbjct: 277 FVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPD 336

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
            FT  S+L A   +  + +G+ VH   +    E   F+  +L+S+Y   G+   AR LFD
Sbjct: 337 WFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFD 396

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
            M E+ +VSWN MIS Y+  GL ++A  LF ++  +G + +                   
Sbjct: 397 GMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPS------------------- 437

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                            +A V  LGACS   AL+LGKE H  A++    E   V  + I 
Sbjct: 438 ----------------DIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTID 481

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY++   ++ +  +F     K + +WN++++ Y      EES  LF  M + G  P+  T
Sbjct: 482 MYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFT 541

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
              IL +C+    ++ G ++                +N +   +    K+     V D++
Sbjct: 542 FIGILTVCSHAGLVEEGLKY----------------FNEMQNFHGIEPKLEHYACVMDML 585

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            R                G    AL+L  EM +   +PD     ++LS C + G +  GQ
Sbjct: 586 GR---------------AGRLDDALRLVHEMPE---QPDSRVWSSLLSFCRNFGELEIGQ 627

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
              E++  +      +E++  + +LY  +G  +  + +
Sbjct: 628 IVAEKLLELEP--KNVENYVSLSNLYAGSGRWDDVRRV 663


>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 652

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 190/620 (30%), Positives = 326/620 (52%), Gaps = 41/620 (6%)

Query: 84  CGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           C + K    G+Q+H   +  G L+ +P  V  LV  YA   L   A  +   S  R    
Sbjct: 69  CAQRKDSVSGQQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLVFGGSE-RDVFG 127

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           +N LIS +V +G   +A+ +Y++M+++ I  D +T+PS+LK    M   D  +V      
Sbjct: 128 YNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLLKGSDAMEVSDVKKVHALAFK 187

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGLWKEAFQ 261
                  +V +ALV+ Y KF  V+ A+++FD++ +R D+V WN +++ Y+    +++A  
Sbjct: 188 LGFVSDCYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALI 247

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F +M+EEGV ++  T  ++                                   L + +
Sbjct: 248 VFSKMREEGVAMSRHTITSV-----------------------------------LSSFT 272

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
             G L  G+ IHG AV+  +     V NALI +Y + K L  A  +F+   E+ + TWNS
Sbjct: 273 VSGDLDNGRSIHGLAVKMGFDSGIVVSNALIDLYGKSKWLEEANSIFEAMDERDLFTWNS 332

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           +L  + +    + +  LF  M  SG+ P+ VT+ ++LP C R+A+L+ G+E H Y++   
Sbjct: 333 VLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMIASG 392

Query: 442 MFNE---HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           + N    +  + NSL++MY + G + +A+ VFD M  +D  ++  +I GYG+Q  G +AL
Sbjct: 393 LLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELAL 452

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            +F  M +  +KPD +T V +L ACSHSG V EG+    +M ++Y I P  +H+AC++D+
Sbjct: 453 DMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQMETLYNILPTSDHYACVIDM 512

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRA  L +A ++   MP      +W ++L +C++H N  +   A ++L E  PE+ G Y
Sbjct: 513 LGRADKLEEAYDLAISMPICDNPVVWRSILSSCRLHGNKDLAVVAGKRLYELEPEHCGVY 572

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+Y     ++++  VR  M++  V+K PGC+W+   N    F   D ++ + + I+
Sbjct: 573 VLMSNVYVEAKKYEEVLDVRDTMKEQNVKKTPGCSWIGLQNGVHTFFTGDQTHPEFESIH 632

Query: 679 PLLGGLTELMKDAGYVVKEE 698
             L  L   M    Y+  ++
Sbjct: 633 GWLSLLISHMHGHEYMTLDD 652



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 4/187 (2%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T  + L  CA+  +   G++ H +++R+   ++      SLV MYA+ G +  A  V
Sbjct: 58  NVATSIATLQRCAQRKDSVSGQQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLV 117

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F   S RD   Y +LI+G+ + G    A+ ++ EM    I PD  T  ++L       + 
Sbjct: 118 FG-GSERDVFGYNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLLKGS--DAME 174

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL- 588
           V   K+   +    G        + +V  Y +   +  A+++  ++P    S +W  L+ 
Sbjct: 175 VSDVKKVHALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVN 234

Query: 589 GACQIHR 595
           G   I R
Sbjct: 235 GYSHIFR 241


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 192/633 (30%), Positives = 324/633 (51%), Gaps = 40/633 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  +  L  G+ +HA A A+GL  +  +   L+  Y   + +  A  +    
Sbjct: 101 TFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKM 160

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLKACGEMMDVDFG 194
            +R  + WN +++ Y   G Y  A+     MQ R  +R +  T  S+L    +   +  G
Sbjct: 161 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQG 220

Query: 195 RVVHS-CIDAC---HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             VH+ C+ A    +E  + +  AL+ MY K   +  A R+F  M  R+ V+W+ +I  +
Sbjct: 221 TSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGF 280

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                  EAF LF +M  EG+                                   +L +
Sbjct: 281 VLCDRMTEAFNLFKDMLVEGM----------------------------------CFLSA 306

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
            +    L  C+ +  L++G ++H    +          N+L++MY++   +  A +LF  
Sbjct: 307 TSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDE 366

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
            A K  I++ ++LSGY     AEE+  +F++M    V+P+  T+ S++P C+ +A LQHG
Sbjct: 367 IAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHG 426

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           +  H  ++ R +  E   + NSL++MYA+ G++  ++ VFD M  RD V++ ++IAGYGI
Sbjct: 427 RCSHGSVIIRGLALE-TSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGI 485

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G G+ A  LF  M     +PD VT + +++ACSHSGLV EG+  F+ MT  YGI P++E
Sbjct: 486 HGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRME 545

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL  R G L++A + I  MP      +W  LLGAC+IH+N  +G+  +  + + 
Sbjct: 546 HYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKL 605

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            PE +G +VL++N+++A G +D+ A+VR   +  G +K PGC+W++       F+  D S
Sbjct: 606 GPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQS 665

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
           +  + +IY  L  +   +K  GY     F  ++
Sbjct: 666 HPCSPDIYHELDNILIDIKKLGYQADTSFVLQD 698



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/499 (27%), Positives = 248/499 (49%), Gaps = 54/499 (10%)

Query: 138 RYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           R P P    +N LI  Y   G +  A+ +Y+ M   R+  + +T+P VLKAC  + D+  
Sbjct: 58  RIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCA 117

Query: 194 GRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR +H+   A      LFV  AL+ +Y +  +   A  +F KM  RD V+WN M++ YA+
Sbjct: 118 GRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYAN 177

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G++  A    ++MQ+ G                              +R   + L S+ 
Sbjct: 178 HGMYHHAIAHLLDMQDRG-----------------------------GLRPNASTLVSLL 208

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN---VRNALITMYSRCKDLRHAYILFK 369
            ++     +  GAL  G  +H   +R    + E    +  AL+ MY++CK L +A  +F 
Sbjct: 209 PLL-----AQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFH 263

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQ 428
               ++ +TW++++ G+   D   E+  LF++M   G+   +  ++AS L +CA +A+L+
Sbjct: 264 GMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLR 323

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G + H  +L ++  +  L   NSL+ MYA++G + EA  +FD ++ +D ++Y +L++GY
Sbjct: 324 MGTQLHA-LLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGY 382

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G+   A  +F++M    ++PD  TMV+++ ACSH   +  G+     +  I G+  +
Sbjct: 383 VQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVI-IRGLALE 441

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
                 ++D+Y + G ++ ++++  KMP     + W T++    IH   G+G+ A    L
Sbjct: 442 TSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVS-WNTMIAGYGIH---GLGKEATTLFL 497

Query: 609 ETR-----PENSGYYVLIA 622
             +     P++  +  LIA
Sbjct: 498 SMKNQGFEPDDVTFICLIA 516



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 5/162 (3%)

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
           W   +E +   G++  A+ VFD +   D   Y +LI  Y  +G    A+ L+  M   ++
Sbjct: 36  WQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV 95

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            P+  T   VL ACS    +  G+       ++ G+   L     ++DLY R      A 
Sbjct: 96  PPNKYTFPFVLKACSALADLCAGRTIHAHAAAV-GLHTDLFVSTALIDLYIRCARFGPAA 154

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
            +  KMP     A  A L G    + N G+   A   LL+ +
Sbjct: 155 NVFAKMPMRDVVAWNAMLAG----YANHGMYHHAIAHLLDMQ 192


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 196/605 (32%), Positives = 315/605 (52%), Gaps = 55/605 (9%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           +R  + W  +I  Y + G + +A+ ++  M   ++    FT  +VL +C        G+ 
Sbjct: 69  VRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKK 128

Query: 197 VHSCI-----DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
           VHS +      AC    + V N+L++MY K G + +A+ +FD+M  R+  SWN MIS + 
Sbjct: 129 VHSFVVKLGLHAC----VPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM 184

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL--D 309
           + G    A   F  + E     ++++WN++  GC + G     L+  S +  ++T L  D
Sbjct: 185 NCGRVDLALAQFELLSER----DIVSWNSMIAGCNQHGFDNEALQFFSSI-LKDTSLKPD 239

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK---------- 359
             +    L AC+++  L  GK+IHG  VR  +     V NALI+MY++            
Sbjct: 240 RFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIE 299

Query: 360 -----------------------DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
                                  D+  A  +F    +  ++ W +M+ GY       ++ 
Sbjct: 300 QSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAI 359

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL--LWNSLV 454
            +F+ M   G  PN  T+A++L   + V +L HGK+ H   +R     E L   + N+L 
Sbjct: 360 EVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSG---EALSPSVGNALT 416

Query: 455 EMYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
            MYA++G +  A+ VF+L+ + RD V++TS+I      G G  A++LFE+M    IKPDH
Sbjct: 417 TMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDH 476

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           +T V VLSAC+H GLV +G+  F+ M +++ I P L H+ACMVDL+GRAGLL +A + + 
Sbjct: 477 ITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVE 536

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
            MP  P    W +LL +C++++N  + + AAE+LL   P NSG Y  +AN+Y++ G WD 
Sbjct: 537 NMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDD 596

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
            AK+R  M+  GV+K  G +WV   N    F V+D  + Q  EIY ++  + + +K  G+
Sbjct: 597 AAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGF 656

Query: 694 VVKEE 698
               E
Sbjct: 657 APDTE 661



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 211/469 (44%), Gaps = 43/469 (9%)

Query: 57  FEAFTRIRITAASHDVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           FE   +I +      V+   F   +++  C    +   GK++H+  + LGL     +   
Sbjct: 88  FEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANS 147

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV-----------------RD---- 153
           L+  YA       A  + +   +R    WN +ISL++                 RD    
Sbjct: 148 LLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSW 207

Query: 154 ----------GFYAEALCVYKQ-MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
                     GF  EAL  +   ++   ++ D F+  S L AC  +  + FG+ +H   +
Sbjct: 208 NSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIV 267

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDK--MLERDAVSWNTMISAYASKGLWKEA 259
               + S  V NAL+SMY K G V++ARR+ ++  + + D +++  +++ Y   G    A
Sbjct: 268 RTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPA 327

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            Q+F  +++     +V+ W  +  G ++ G     +E+   M ++    +S      L A
Sbjct: 328 RQIFNSLKDP----DVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSA 383

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE-KSIIT 378
            S V +L  GK+IH SA+R       +V NAL TMY++   +  A  +F +  + +  ++
Sbjct: 384 SSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVS 443

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W SM+         EE+  LF +M   G++P+++T   +L  C     ++ G+ +   + 
Sbjct: 444 WTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMK 503

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIA 486
                +  L  +  +V+++ R+G + EA K V ++    D + + SL++
Sbjct: 504 NVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLS 552



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 210/465 (45%), Gaps = 76/465 (16%)

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
           +S+++ N L+++Y K G    A  LF++M  +   SWNT++S YA +G  ++A Q+F  +
Sbjct: 8   FSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLI 67

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
                  + ++W TI  G  + G F+  +++   M   +           L +C+  G+ 
Sbjct: 68  PVR----DSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSR 123

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL------------------- 367
            +GK++H   V+        V N+L+ MY++  DL+ A ++                   
Sbjct: 124 GIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLH 183

Query: 368 ------------FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTI 414
                       F++ +E+ I++WNSM++G        E+   F  + + + ++P+  ++
Sbjct: 184 MNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSL 243

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS-------------- 460
           AS L  CA +  L  GK+ H YI+ R MF+    + N+L+ MYA+S              
Sbjct: 244 ASALSACANLEKLSFGKQIHGYIV-RTMFDASGAVGNALISMYAKSGGVEIARRIIEQSG 302

Query: 461 -------------------GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
                              G +  A+ +F+ +   D V +T++I GY   G    A+++F
Sbjct: 303 ISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVF 362

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEG-QKQFERMTSIYGIFPQLEHFACMVDLYG 560
           + M     +P+  T+ A+LSA S    +  G Q     + S   + P + +   +  +Y 
Sbjct: 363 KTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTMYA 420

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
           +AG +N A+++   +     +  W +++ A   H   G+GE A E
Sbjct: 421 KAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH---GLGEEAIE 462



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--CFLVE 133
           + A ++     V +L  GKQ+HA AI  G   +P +   L T YA     N A   F + 
Sbjct: 376 TLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLL 435

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             N R  + W  +I    + G   EA+ +++QM +  I+ D+ TY  VL AC     V+ 
Sbjct: 436 RQN-RDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQ 494

Query: 194 GRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
           GR     +   H  + +L  +  +V ++G+ G +  A +  + M +E D ++W +++S+ 
Sbjct: 495 GRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSC 554

Query: 250 --YASKGLWKEAFQ--LFVEMQEEG 270
             Y +  L K A +  L +E    G
Sbjct: 555 KVYKNVDLAKVAAERLLLIEPNNSG 579


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/601 (32%), Positives = 316/601 (52%), Gaps = 41/601 (6%)

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L   L+  Y     +  A  L +    R  + W  +I+ Y     ++ A  V+  M    
Sbjct: 43  LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG 102

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVHNALVSMYGKF-GQVDV 227
           ++ + FT  +VLKAC  +  +  G++VH  +        S++V NAL+ MY      +D 
Sbjct: 103 VKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDN 162

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR +F+ +  ++AVSW T+I+ Y  +   ++AF                           
Sbjct: 163 ARLVFEDIGTKNAVSWTTLITGYTHR---RDAF--------------------------- 192

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                G L +  +M  +E  L   +  I + AC+ +G+  LGK++H + +   +     V
Sbjct: 193 -----GGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQVHAAVINHGFESNLPV 247

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            NA++ MY RC+    A  LF    +K  ITWN++++G+  LD + ES  +F +M   G 
Sbjct: 248 MNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGFETLD-SYESLCIFSQMVSEGF 306

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN  T  S++  CA +A L  G++ H  I+ R + N +L L N+L++MYA+ G V ++ 
Sbjct: 307 SPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDN-NLELSNALIDMYAKCGNVADSH 365

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            +F  M   + V++TS++ GYG  G G+ A+ LF EM  + IKPD +  +AVLSACSH+G
Sbjct: 366 KIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAG 425

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG + F  MTS Y + P  + +AC+VDL  RAG + +A E+I  MP+ P  ++W  L
Sbjct: 426 LVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFKPDESIWVAL 485

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC+ ++   I + AA K+LE +P  +G YVL++N  AA G W   A +R  MR    +
Sbjct: 486 LGACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLSNFSAAEGNWADFASLRKLMRSTKSK 545

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVE 707
           K  G +W++  N    F+V D  +   +E+  +L  L   MKDAGYV+  + CS  ++ +
Sbjct: 546 KEVGRSWIELKNQVCSFIVGDIFDSSNKEVCEVLELLIRHMKDAGYVLDLD-CSAHDLED 604

Query: 708 E 708
           E
Sbjct: 605 E 605



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 2/215 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+  +  C  + +   GKQ+HA  I  G E N  ++  ++  Y      + A  L    
Sbjct: 212 SFSIAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEM 271

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN LI+ +     Y E+LC++ QM S     + FT+ SV+ AC  +  +  G+
Sbjct: 272 TQKDTITWNTLIAGFETLDSY-ESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQ 330

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   I    + +L + NAL+ MY K G V  + ++F  M   + VSW +M+  Y + G
Sbjct: 331 QLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHG 390

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
             KEA  LF EM   G++ + I +  +   C   G
Sbjct: 391 HGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAG 425


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 192/591 (32%), Positives = 312/591 (52%), Gaps = 39/591 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S   ++  C  ++    G+Q+H   +  GL+    +   LV  Y       ++  + +  
Sbjct: 111 SIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEI 170

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  + WN +I+         +AL +++ M    ++ ++ T+ S+L    E+   DFG+
Sbjct: 171 SERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGK 230

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   +    E  +FV NAL+ MY K G+   A  +F+++ E++ VSWN M++ +A   
Sbjct: 231 EIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNR 290

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L   A  L  +MQ +G   N +T+  +                                 
Sbjct: 291 LELAAVDLVRQMQADGEIPNSVTFTNV--------------------------------- 317

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +G L+ GKEIH  A+R        V NAL  MY++C  L  A  +FK++   
Sbjct: 318 --LPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISLRD 375

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            + ++N ++ GY+      ES  LF EM   G++ + V+   ++  CA +A L+ GKE H
Sbjct: 376 EV-SYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVH 434

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              +R+ + + HL + N+L++ Y + G++  A  VF  +  RD  ++ S+I GYG+ GE 
Sbjct: 435 GLAVRKHL-HTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGEL 493

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
            +A+ LFE M ++ ++ D V+ +AVLSACSH GLV EG+K FE M  +  I P   H+AC
Sbjct: 494 TIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM-QVQNIKPTQMHYAC 552

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL GRAGL+ +A ++I  +P  P + +W  LLGAC+IH    +  WAAE L + +P++
Sbjct: 553 MVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQH 612

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
           SGYY +++NMYA  G WD+  +VR  M+  G +K PGC+WV   N    F+
Sbjct: 613 SGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVHAFV 663



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/516 (28%), Positives = 252/516 (48%), Gaps = 40/516 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C    ++ +G+++H     LG + +  +   L+ FY +     +   + +  
Sbjct: 9   TFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEM 68

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG 194
             R  + WN +I ++   GFYAEA+ ++ +M  R   R +  +  SVL  C  + D   G
Sbjct: 69  LERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTG 128

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H   +    +  + V NALV +YGK G V  +RR+FD++ ER+ VSWN +I++ A  
Sbjct: 129 RQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYL 188

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
              ++A ++F  M + GV+ N +T             F  +L +L  ++           
Sbjct: 189 ERNQDALEMFRLMIDGGVKPNSVT-------------FSSMLPVLVELKL---------- 225

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                          GKEIHG ++R        V NALI MY++      A  +F    E
Sbjct: 226 ------------FDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGE 273

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K+I++WN+M++ +        +  L R+M   G  PN VT  ++LP CAR+  L+ GKE 
Sbjct: 274 KNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEI 333

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H   +R    +  L + N+L +MYA+ G +  A+ VF + S RDEV+Y  LI GY     
Sbjct: 334 HARAIRTGS-SVDLFVSNALTDMYAKCGCLNLARRVFKI-SLRDEVSYNILIIGYSQTTN 391

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              +L+LF EM    +K D V+ + V+SAC++   + +G K+   +     +   L    
Sbjct: 392 CSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQG-KEVHGLAVRKHLHTHLFIAN 450

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            ++D Y + G ++ A ++  ++P   T++  + +LG
Sbjct: 451 ALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILG 486



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 203/402 (50%), Gaps = 37/402 (9%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +R D+ T+P VLKAC + + V  GR +H  +     +  +FV N L+  YG  G +   +
Sbjct: 3   VRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVK 62

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+FD+MLERD VSWN++I  ++  G + EA  LF EM                   LR+G
Sbjct: 63  RVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMN------------------LRSG 104

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
               ++ ++S +       D V                 G++IH   V+        V N
Sbjct: 105 FRPNMVSIVSVLPVCAGLEDGVT----------------GRQIHCYVVKTGLDSQVTVGN 148

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ +Y +C  ++ +  +F   +E++ ++WN++++   +L+  +++  +FR M   GV+P
Sbjct: 149 ALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKP 208

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N VT +S+LP+   +     GKE H + LR  + ++ + + N+L++MYA+SG+  +A +V
Sbjct: 209 NSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESD-IFVANALIDMYAKSGRSLQASNV 267

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+ +  ++ V++ +++A +        A+ L  +M  +   P+ VT   VL AC+  G +
Sbjct: 268 FNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFL 327

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
             G++   R     G    L     + D+Y + G LN A+ +
Sbjct: 328 RPGKEIHARAIRT-GSSVDLFVSNALTDMYAKCGCLNLARRV 368



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 3/192 (1%)

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           GV  +  T   +L  CA   ++Q G+E H  + +   F+  + + N+L+  Y   G + +
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLG-FDSDVFVGNTLLLFYGNCGGLKD 60

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN-KNQIKPDHVTMVAVLSACS 524
            K VFD M  RD V++ S+I  + + G    A+ LF EMN ++  +P+ V++V+VL  C+
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
                V G +Q        G+  Q+     +VD+YG+ G +  ++ +  ++      +  
Sbjct: 121 GLEDGVTG-RQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWN 179

Query: 585 ATLLGACQIHRN 596
           A +     + RN
Sbjct: 180 AIITSLAYLERN 191


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 206/645 (31%), Positives = 314/645 (48%), Gaps = 89/645 (13%)

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP----WNLLISLYVRDGFYAEALCVYK 164
           P L  K +  Y++      A  L +    + P P    W +LIS   + G   EA+  Y 
Sbjct: 11  PHLALKFIKVYSNSGDLQRARHLFD----KIPQPDLPTWTILISALTKHGRSLEAIQYYN 66

Query: 165 QMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-----CHEWSLFVHNALVSM 218
             + +  +  D     SV KAC  + DV   + VH   DA     C +  + + NAL+ M
Sbjct: 67  DFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHE--DAIRFGFCSD--VLLGNALIDM 122

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           YGK    + AR +F+ M  RD +SW +M S Y + GL +EA   F +M   G   N +T 
Sbjct: 123 YGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTV 182

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
           ++I                                   L AC+ +  LK G+E+HG  VR
Sbjct: 183 SSI-----------------------------------LPACTDLKDLKSGREVHGFVVR 207

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY-THLDC------ 391
              G    V +AL+ MY+ C  +R A ++F   + +  ++WN +++ Y  + +C      
Sbjct: 208 NGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSV 267

Query: 392 ----------------------------AEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
                                        E++  +   M  SG +PN +TI S+LP C  
Sbjct: 268 FGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTN 327

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           + +L+ GK+ H YI R   F + L    +LV MYA+ G +  ++ VF +M++RD V++ +
Sbjct: 328 LESLRGGKQIHGYIFRHWFFQD-LTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNT 386

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +I    + G G  AL LF EM  + ++P+ VT   VLS CSHS LV EG   F+ M+  +
Sbjct: 387 MIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDH 446

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
            + P  +H +CMVD+  RAG L +A E I KMP  PT+  W  LLG C++++N  +G  A
Sbjct: 447 SVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIA 506

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
           A +L E   +N G YVL++N+  +   W + ++ R  MRD GV K PGC+W+   N    
Sbjct: 507 ANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHT 566

Query: 664 FLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           F+V D SN Q+ EIY  L  + E M+ AGY+   +F  ++   EE
Sbjct: 567 FVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEE 611



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 191/384 (49%), Gaps = 1/384 (0%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  ++ +   K++H  AI  G   + +L   L+  Y        A  + E    R  + W
Sbjct: 88  CASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISW 147

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
             + S YV  G   EAL  +++M     R ++ T  S+L AC ++ D+  GR VH   + 
Sbjct: 148 TSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVR 207

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                ++FV +ALV+MY     +  A+ +FD M  RD VSWN +I+AY      ++   +
Sbjct: 208 NGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSV 267

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M  EGV +N  +WN + GGC++ G  +  LE+LSRM+      + +     L AC++
Sbjct: 268 FGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTN 327

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           + +L+ GK+IHG   R  + +      AL+ MY++C DL  +  +F M  ++  ++WN+M
Sbjct: 328 LESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTM 387

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +   +     EE+  LFREM  SGV PN VT   +L  C+    +  G      + R   
Sbjct: 388 IIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHS 447

Query: 443 FNEHLLLWNSLVEMYARSGKVPEA 466
                   + +V++ +R+G++ EA
Sbjct: 448 VEPDADHHSCMVDVLSRAGRLEEA 471



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 189/426 (44%), Gaps = 74/426 (17%)

Query: 208 SLFVHNAL--VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           SL  H AL  + +Y   G +  AR LFDK+ + D  +W  +ISA    G   EA Q + +
Sbjct: 8   SLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYND 67

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
            + +                               +   +  L SVA      AC+ +  
Sbjct: 68  FRHKNC-----------------------------VEPDKLLLLSVAK-----ACASLRD 93

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           +   K +H  A+R  +     + NALI MY +C+    A ++F+    + +I+W SM S 
Sbjct: 94  VMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASC 153

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           Y +     E+   FR+M  +G  PN VT++SILP C  + +L+ G+E H +++R  M   
Sbjct: 154 YVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGM-GG 212

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE--------GRV- 496
           ++ + ++LV MYA    + +A+ VFD MSRRD V++  LI  Y +  E        GR+ 
Sbjct: 213 NVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMM 272

Query: 497 --------------------------ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
                                     AL++   M  +  KP+ +T+ +VL AC++    +
Sbjct: 273 SEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLE-SL 331

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G KQ       +  F  L     +V +Y + G L  ++ + + M    T + W T++ A
Sbjct: 332 RGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVS-WNTMIIA 390

Query: 591 CQIHRN 596
             +H N
Sbjct: 391 TSMHGN 396



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 170/411 (41%), Gaps = 83/411 (20%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G L +A  AF ++ +     + V  + + I+  C  +K L  G+++H   +  G+  N  
Sbjct: 158 GLLREALGAFRKMGLNGERPNSV--TVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVF 215

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY-------------------- 150
           +   LV  YAS      A  + ++ + R  + WN+LI+ Y                    
Sbjct: 216 VSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEG 275

Query: 151 ---------------VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                          +++G   +AL V  +MQ+   + +  T  SVL AC  +  +  G+
Sbjct: 276 VGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGK 335

Query: 196 VVHSCIDACHEW---SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
            +H  I     W    L    ALV MY K G ++++RR+F  M +RD VSWNTMI A + 
Sbjct: 336 QIHGYI--FRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSM 393

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G  +EA  LF EM + GV  N +T             F GVL                 
Sbjct: 394 HGNGEEALLLFREMVDSGVRPNSVT-------------FTGVLS---------------- 424

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAY-ILFKM 370
                  CSH   +  G  I  S  R    E + +  + ++ + SR   L  AY  + KM
Sbjct: 425 ------GCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKM 478

Query: 371 TAEKSIITWNSMLSG---YTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
             E +   W ++L G   Y +++    +A    E+  S    NYV +++IL
Sbjct: 479 PIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEI-ESDNPGNYVLLSNIL 528


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 196/568 (34%), Positives = 306/568 (53%), Gaps = 27/568 (4%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R    W   +    R   + EA+  Y +M     R DNF +P+VLKA   + D+  G  +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 198 HSCID--ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           H+          S+ V N LV+MYGK G +       DK         N +++ YA  G 
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIG------DKTFTN-----NALMAMYAKLGR 163

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             ++  LF    E  V+ ++++WNT+     ++  F   L     M  +   LD V    
Sbjct: 164 VDDSKALF----ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIAS 219

Query: 316 GLGACSHVGALKLGKEIHGSAVRGC-YGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
            L ACSH+  L +GKEIH   +R     E   V +AL+ MY  C+ +     +F     +
Sbjct: 220 VLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR 279

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCAR-VANLQHGKE 432
            I  WN+M+SGY      E++  LF EM + +G+ PN  T+AS++P C   +A +  GKE
Sbjct: 280 RIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKE 339

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H Y +R  M    + + ++LV+MYA+ G +  ++ VF+ M  ++ +T+  LI   G+ G
Sbjct: 340 IHAYAIRN-MLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHG 398

Query: 493 EGRVALKLFEEM-----NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           +G  AL+LF+ M        + KP+ VT + V +ACSHSGL+ EG   F RM   +G+ P
Sbjct: 399 KGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEP 458

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYT-PTSAMWATLLGACQIHRNTGIGEWAAEK 606
             +H+AC+VDL GRAG L +A E++  MP        W++LLGAC+IH+N  +GE AA+ 
Sbjct: 459 TSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKN 518

Query: 607 LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
           LL   P  + +YVL++N+Y++ G W+K  +VR  MR +GV+K PGC+W++  +    F+ 
Sbjct: 519 LLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMA 578

Query: 667 DDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            D S+ Q+++++  L  L+E M+  GYV
Sbjct: 579 GDVSHPQSEQLHGFLETLSEKMRKEGYV 606



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 139/572 (24%), Positives = 239/572 (41%), Gaps = 79/572 (13%)

Query: 2   PPSSSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFT 61
           PP S    +   + S L    P K   P  +      + ++ L+      +  +A   + 
Sbjct: 30  PPPS----IQKPTASPLTSKTPPKPTSPSRST----ASWVDALRSRTRSNDFREAISTYI 81

Query: 62  RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK------- 114
            + ++ A  D    +F  ++     ++ L  G+Q+HA A+  G   + V V         
Sbjct: 82  EMTVSGARPDNF--AFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYG 139

Query: 115 --------------LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
                         L+  YA     +++  L E+   R  + WN +IS + +   ++EAL
Sbjct: 140 KCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEAL 199

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSM 218
             ++ M    +  D  T  SVL AC  +  +D G+ +H+ +   ++   + FV +ALV M
Sbjct: 200 AFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDM 259

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y    QV+  RR+FD +L R    WN MIS YA  GL ++A  LF+EM    ++V  +  
Sbjct: 260 YCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEM----IKVAGLLP 315

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH-VGALKLGKEIHGSAV 337
           NT                         T + SV     + AC H + A+  GKEIH  A+
Sbjct: 316 NT-------------------------TTMASV-----MPACVHSLAAIAKGKEIHAYAI 345

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           R        V +AL+ MY++C  L  +  +F     K++ITWN ++         EE+  
Sbjct: 346 RNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALE 405

Query: 398 LFREMF----RSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           LF+ M     R G  +PN VT  ++   C+    +  G      +            +  
Sbjct: 406 LFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYAC 465

Query: 453 LVEMYARSGKVPEAKSVFDLMSRR-DEV-TYTSLIAGYGIQGE---GRVALKLFEEMNKN 507
           +V++  R+G++ EA  + + M    D+V  ++SL+    I      G VA K    +  N
Sbjct: 466 VVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPN 525

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
            +   +V +  + S+       +E +K   +M
Sbjct: 526 -VASHYVLLSNIYSSAGLWNKAMEVRKNMRQM 556


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 201/627 (32%), Positives = 314/627 (50%), Gaps = 71/627 (11%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WNL I   V      E+L ++++M+      +NFT+P V KAC  + DV    +VH+ + 
Sbjct: 20  WNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 79

Query: 203 ACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               WS +FV  A V M+ K   VD A ++F++M ERDA +WN M+S +   G   +AF 
Sbjct: 80  KSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFS 139

Query: 262 LFVEMQ-----------------------------------EEGVEVNVI---TWNTIAG 283
           LF EM+                                     GV+V V    TW +  G
Sbjct: 140 LFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYG 199

Query: 284 GCLRTGNFKGVLELLSR-----------------------------MRTQETYLDSVATV 314
            C    + K V E + R                             +  +E +   ++T 
Sbjct: 200 KCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTF 259

Query: 315 IGLGA-CSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
           I L A C +   L  G+ IH  A+  G   + E + N  I+MYS+ +D   A +LF +  
Sbjct: 260 INLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAI-NTFISMYSKSEDTCSARLLFDIMT 318

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            ++ ++W  M+SGY      +E+  LF  M +SG +P+ VT+ S++  C +  +L+ GK 
Sbjct: 319 SRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKW 378

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
                       +++++ N+L++MY++ G + EA+ +FD    +  VT+T++IAGY + G
Sbjct: 379 IDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNG 438

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               ALKLF +M     KP+H+T +AVL AC+HSG + +G + F  M  +Y I P L+H+
Sbjct: 439 IFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHY 498

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +CMVDL GR G L +A E+I  M   P + +W  LL AC+IHRN  I E AAE L    P
Sbjct: 499 SCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEP 558

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           + +  YV +AN+YAA G WD  A++R+ M+   ++K PG + +        F V +  +V
Sbjct: 559 QMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHV 618

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEF 699
           + + IY  L GL+   KD   + K+ +
Sbjct: 619 ENEVIYFTLNGLSLFAKDKHVLYKDVY 645



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 214/486 (44%), Gaps = 44/486 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  F   G+  KAF  F  +R+   + D V  +   +I      K+L   + +HA  I L
Sbjct: 125 LSGFCQSGHTDKAFSLFREMRLNEITPDSV--TVMTLIQSASFEKSLKLLEAMHAVGIRL 182

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVE--NSNIRYPLPWNLLISLYVRDGFYAEALC 161
           G++    +    ++ Y      ++A  + E  +   R  + WN +   Y   G   +A  
Sbjct: 183 GVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFG 242

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           +Y  M     + D  T+ ++  +C     +  GR++HS  I    +  +   N  +SMY 
Sbjct: 243 LYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYS 302

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K      AR LFD M  R  VSW  MIS YA KG   EA  LF  M + G + +++T  +
Sbjct: 303 KSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLS 362

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA-VRG 339
           +  GC   G F                                G+L+ GK I   A + G
Sbjct: 363 LISGC---GKF--------------------------------GSLETGKWIDARADIYG 387

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
           C  +   + NALI MYS+C  +  A  +F  T EK+++TW +M++GY       E+  LF
Sbjct: 388 CKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLF 447

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M     +PN++T  ++L  CA   +L+ G E+   + +    +  L  ++ +V++  R
Sbjct: 448 SKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGR 507

Query: 460 SGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMN--KNQIKPDHVTM 516
            GK+ EA  +   MS + D   + +L+    I    ++A +  E +   + Q+   +V M
Sbjct: 508 KGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEM 567

Query: 517 VAVLSA 522
             + +A
Sbjct: 568 ANIYAA 573



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 13/233 (5%)

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           L++++   S+  WN  +    + +   ES  LFREM R G EPN  T   +   CAR+A+
Sbjct: 8   LYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAD 67

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           +   +  H ++++   +++ + +  + V+M+ +   V  A  VF+ M  RD  T+ ++++
Sbjct: 68  VGCCEMVHAHLIKSPFWSD-VFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLS 126

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI---Y 543
           G+   G    A  LF EM  N+I PD VT++ ++ + S      +  K  E M ++    
Sbjct: 127 GFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFE----KSLKLLEAMHAVGIRL 182

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAK---EIITKMPYTPTSAMWATLLGACQI 593
           G+  Q+      +  YG+ G L+ AK   E I +   T  S  W ++  A  +
Sbjct: 183 GVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVS--WNSMFKAYSV 233


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 204/654 (31%), Positives = 353/654 (53%), Gaps = 42/654 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +A  G      + F+ +R+   S + V  +F  ++  C     +  G QLH   +  
Sbjct: 207 LNGYAKCGASDSVIKGFSLMRMDQISPNAV--TFDCVLSVCASKLLIDLGVQLHGLVVVS 264

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL+    +   L++ Y+    +++A  L    +    + WN +IS YV+ G   E+L  +
Sbjct: 265 GLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFF 324

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL--FVHNALVSMYGK 221
            +M S  +  D  T+ S+L +  +  ++++ R +H C    H  SL  F+ +AL+  Y K
Sbjct: 325 YEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIH-CYIMRHSISLDIFLTSALIDAYFK 383

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
              V +A+++F +    D V +  MIS Y   GL  +A ++F  + +  +  N IT    
Sbjct: 384 CRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEIT---- 439

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                     L S+  VIG      + ALKLG+E+HG  ++  +
Sbjct: 440 --------------------------LVSILPVIG-----GLLALKLGRELHGFIIKKGF 468

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               N+  A+I MY++C  +  AY +F   +++ I++WNSM++     D    +  +FR+
Sbjct: 469 DNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQ 528

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG+  + V+I++ L  CA + +   GK  H ++++ ++  + +   ++L++MYA+ G
Sbjct: 529 MGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALD-VYSESTLIDMYAKCG 587

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVL 520
            +  A +VFD M  ++ V++ S+IA YG  G+ + +L LF EM  K+  +PD +T + ++
Sbjct: 588 NLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEII 647

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           S C H G V EG + F  MT  YGI PQ EH+AC+VDL+GRAG L++A E +  MP+ P 
Sbjct: 648 SLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPD 707

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           + +W TLLGA ++H+N  + + A+ +L++  P NSGYYVLI+N +A TG W+ + KVR+ 
Sbjct: 708 AGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSL 767

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           M++  V+KIPG +W++   +   F+  D ++ ++  IY LL  L E ++  GY+
Sbjct: 768 MKEREVQKIPGYSWIEINKITHLFVSGDVNHPESSHIYSLLNSLLEELRLEGYI 821



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 256/525 (48%), Gaps = 59/525 (11%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--CFLVENSNIRYPL 141
           C  +  L QGKQ+HA  I   +  +     +++  YA    ++N    F   +S +    
Sbjct: 41  CSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIR 100

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD---VDF-GRVV 197
           PWN +IS +VR G   +AL  Y +M    +  D  T+P ++KAC  + +   ++F    V
Sbjct: 101 PWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTV 160

Query: 198 HSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            S    C+E   FV ++L+  Y ++G++DVA +LFD++L++D V WN M++ YA  G   
Sbjct: 161 SSLGMDCNE---FVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASD 217

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
              + F  M+ + +  N +T++ +                                   L
Sbjct: 218 SVIKGFSLMRMDQISPNAVTFDCV-----------------------------------L 242

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
             C+    + LG ++HG  V        +++N+L++MYS+C     A  LF+M +    +
Sbjct: 243 SVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTV 302

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           TWN M+SGY      EES   F EM  SGV P+ +T +S+LP  ++  NL++ ++ HCYI
Sbjct: 303 TWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYI 362

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           +R ++ +  + L ++L++ Y +   V  A+ +F   +  D V +T++I+GY   G    A
Sbjct: 363 MRHSI-SLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDA 421

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI-----FPQLEHF 552
           L++F  + K +I P+ +T+V++L        V+ G    +    ++G      F    + 
Sbjct: 422 LEMFRWLVKVKISPNEITLVSILP-------VIGGLLALKLGRELHGFIIKKGFDNRCNI 474

Query: 553 AC-MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
            C ++D+Y + G +N A EI  ++      + W +++  C    N
Sbjct: 475 GCAVIDMYAKCGRMNLAYEIFGRLSKRDIVS-WNSMITRCAQSDN 518



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 127/533 (23%), Positives = 242/533 (45%), Gaps = 40/533 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  F   G L++A   + ++     S DV   +F  ++  C  +K     + L     +L
Sbjct: 106 ISSFVRMGLLNQALAFYFKMLCFGVSPDV--STFPCLVKACVALKNFKGIEFLSDTVSSL 163

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G++ N  +   L+  Y  +   + A  L +    +  + WN++++ Y + G     +  +
Sbjct: 164 GMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGF 223

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
             M+  +I  +  T+  VL  C   + +D G  +H  +     ++   + N+L+SMY K 
Sbjct: 224 SLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKC 283

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G+ D A +LF  M   D V+WN MIS Y   GL +E+   F EM   GV  + IT++++ 
Sbjct: 284 GRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSL- 342

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                    L SV+    L  C         ++IH   +R    
Sbjct: 343 -------------------------LPSVSKFENLEYC---------RQIHCYIMRHSIS 368

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               + +ALI  Y +C+ +  A  +F       ++ + +M+SGY H     ++  +FR +
Sbjct: 369 LDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWL 428

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            +  + PN +T+ SILP+   +  L+ G+E H +I+++  F+    +  ++++MYA+ G+
Sbjct: 429 VKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKG-FDNRCNIGCAVIDMYAKCGR 487

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  +F  +S+RD V++ S+I           A+ +F +M  + I  D V++ A LSA
Sbjct: 488 MNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSA 547

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           C++      G+     M   + +   +   + ++D+Y + G L  A  +   M
Sbjct: 548 CANLPSESFGKAIHGFMIK-HSLALDVYSESTLIDMYAKCGNLKAAMNVFDTM 599


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 206/653 (31%), Positives = 337/653 (51%), Gaps = 48/653 (7%)

Query: 46  DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           +F   G  S+  + F+++   A   D V  +   +   C ++ +L  G+ +H   +   +
Sbjct: 175 NFVQNGQASEGLDMFSQMISEAVEPDSV--TMLSVTEACSELGSLRLGRSVHGYVVRREI 232

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E N  L   L+  Y       +A  L EN   R   PW  +IS Y + G + EAL V+ +
Sbjct: 233 ESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAK 292

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           MQ  ++  +  T   VL AC  +  V  GR VH                           
Sbjct: 293 MQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGF------------------------- 327

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            V RR  D  L+    +   ++  YA  G  ++  ++F  ++E+     +++WNT+    
Sbjct: 328 -VIRRAMDPELDFLGPA---LMELYADTGNLRDCHKVFETIKEK----TILSWNTLISIF 379

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEY 344
            R G  +  L L  +M+TQ    DS +    L AC  +   +LG +IHG  ++ G + ++
Sbjct: 380 TRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF 439

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V+NALI MY++C  +  A  +F+   EKS++TWNSM+ G++    + E+  LF +M+ 
Sbjct: 440 --VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYM 497

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFH----CYILRRAMFNEHLLLWNSLVEMYARS 460
           + V+ + +T  S++  C+ +  L+ GK  H     Y LR+  +     L  +L +MY++ 
Sbjct: 498 NCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSY-----LDTALTDMYSKC 552

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G++  A  VFD MS R  V+++ +IAGYG+ G+    + LF +M  + IKP+ +T + +L
Sbjct: 553 GELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHIL 612

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           SACSH+G V EG+  F  M+  +G+ P+ +HFACMVDL  RAG LN A +IIT +P+   
Sbjct: 613 SACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPAN 671

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           S++W  LL  C+IH+   I +   + LL+    ++GYY L++N+YA  G WDK  KVR+ 
Sbjct: 672 SSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSM 731

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           M+  G+RK+PG + ++       F   DTS+ Q ++IY  L     L+    Y
Sbjct: 732 MKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVY 784



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/520 (27%), Positives = 257/520 (49%), Gaps = 41/520 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F  ++  C     L+ G ++H   I  G E + V+   L+  Y   S  ++AC   +   
Sbjct: 103 FPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMP 162

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           IR  + W+ ++  +V++G  +E L ++ QM S  +  D+ T  SV +AC E+  +  GR 
Sbjct: 163 IRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRS 222

Query: 197 VHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           VH  +     E +  ++N+L+ MYGK G +  A RLF+ +  R    W  MIS Y   G 
Sbjct: 223 VHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGC 282

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
           ++EA  +F +MQE  +E N +T   +                                  
Sbjct: 283 FQEALNVFAKMQEFKMEPNQVTMVGV---------------------------------- 308

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYG-EYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
            L AC+ +G +K G+ +HG  +R     E + +  AL+ +Y+   +LR  + +F+   EK
Sbjct: 309 -LCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEK 367

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           +I++WN+++S +T     EE+  LF +M   G+ P+  ++AS L  C  ++  Q G + H
Sbjct: 368 TILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIH 427

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            YI++   FN+   + N+L++MYA+ G V  A  +F+ +  +  VT+ S+I G+   G  
Sbjct: 428 GYIIKTGNFND--FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYS 485

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             A+ LF++M  N +K D +T ++V+ ACSH G + +G+    ++  +YG+         
Sbjct: 486 VEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI-MYGLRKDSYLDTA 544

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           + D+Y + G L  A  +  +M      + W+ ++    +H
Sbjct: 545 LTDMYSKCGELQMAHGVFDRMSERSIVS-WSVMIAGYGMH 583



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 138/493 (27%), Positives = 236/493 (47%), Gaps = 59/493 (11%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP----WNLLISLY 150
           QLHA     GL ++P    KL+  YA   ++ ++  + +     +P P    W +LI  Y
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDT----FPKPDSFMWGVLIKCY 74

Query: 151 VRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWS 208
           V  GF+ EA+ +Y +M    + +  NF +PSVLKAC    D+  G  VH  +  C  E  
Sbjct: 75  VWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESD 134

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
             V  +L+ MYG+   +D A + FD M  RD V+W++++  +   G   E          
Sbjct: 135 AVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEG--------- 185

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                                     L++ S+M ++    DSV  +    ACS +G+L+L
Sbjct: 186 --------------------------LDMFSQMISEAVEPDSVTMLSVTEACSELGSLRL 219

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+ +HG  VR       ++ N+LI MY +  DL  A  LF+    +    W  M+S Y  
Sbjct: 220 GRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQ 279

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
             C +E+  +F +M    +EPN VT+  +L  CAR+  ++ G+  H +++RRAM  E   
Sbjct: 280 SGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDF 339

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           L  +L+E+YA +G + +   VF+ +  +  +++ +LI+ +   G+   AL LF +M    
Sbjct: 340 LGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQG 399

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERM-TSIYGIFPQLEHF-----ACMVDLYGRA 562
           + PD  ++ + LSAC        G   F ++   I+G   +  +F       ++D+Y + 
Sbjct: 400 LMPDSYSLASSLSAC--------GTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKC 451

Query: 563 GLLNKAKEIITKM 575
           G ++ A ++  K+
Sbjct: 452 GFVHSANKMFEKI 464


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 201/626 (32%), Positives = 314/626 (50%), Gaps = 66/626 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE-N 134
           ++  ++  C     L +GKQ+HA AI    + N  +V  LV  YA       A +L E  
Sbjct: 140 TWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELA 199

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
            + R  + W  +++ Y ++G   +A+  ++ M+   I  + FT+PS+L ACG +    FG
Sbjct: 200 PDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFG 259

Query: 195 RVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             VH CI  +    ++FV +ALV MY K G +  ARR+ + M   D VSW          
Sbjct: 260 AQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSW---------- 309

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                                    N++  GC+R G  +  L L   M  +   +D    
Sbjct: 310 -------------------------NSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTY 344

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L   S V  ++    +H   V+  +  Y+ V NAL+ MY++     +A+ +F+   +
Sbjct: 345 PSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTD 404

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K +I+W S+++G  H    EE+  LF EM   G+ P+ + IA++L  CA +  L+ GK+ 
Sbjct: 405 KDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQV 464

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H   L+  +    L + NSLV MYA+ G + +A  VFD M  +D +T+T+LI GY   G 
Sbjct: 465 HANFLKSGL-GSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGR 523

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           GR                             H+GLV  G+  F+ M  +YGI P  EH+A
Sbjct: 524 GR----------------------------DHAGLVEHGRSYFQSMEEVYGIKPGPEHYA 555

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CM+DL GR+G L +AKE++ +M   P + +W  LL AC++H N  +GE AA  L E  P+
Sbjct: 556 CMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPK 615

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N+  YVL++N+Y+A G W++ AK R  M+  GV K PGC+W++  +    F+ +D S+ +
Sbjct: 616 NAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPR 675

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEEF 699
             EIY  +  +  L+K+AGYV    F
Sbjct: 676 TAEIYSKVDEIMILIKEAGYVPDMNF 701



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 192/391 (49%), Gaps = 30/391 (7%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N ++S   K G+VD AR+LFD M +RD  SWNTMI AYA+ G   EA +LF E       
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIR--- 101

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            + ITW+++  G  R G     LEL   M+ +    +       L  CS    L+ GK+I
Sbjct: 102 -SCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQI 160

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK-SIITWNSMLSGYTHLDC 391
           H  A++  +     V   L+ MY++CK +  A  LF++  +K + + W +M++GY+    
Sbjct: 161 HAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGD 220

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             ++   FR+M   G+E N  T  SIL  C  ++    G + H  I+R   F  ++ + +
Sbjct: 221 GHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSG-FGANVFVGS 279

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +LV+MY++ G +  A+ + + M   D V++ S+I G   QG G  AL LF  M+   +K 
Sbjct: 280 ALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKI 339

Query: 512 DHVTMVAVLSACS-----------HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           D  T  +VL+  S           HS +V  G + ++ + +             +VD+Y 
Sbjct: 340 DEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNN------------ALVDMYA 387

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           + G  + A ++  KM      + W +L+  C
Sbjct: 388 KRGYFDYAFDVFEKMTDKDVIS-WTSLVTGC 417



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 128/257 (49%), Gaps = 9/257 (3%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N +I  Y+    L  A  LF  T  +S ITW+S++SGY    C  E+  LF EM   G  
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           PN  T  S+L +C+    L+ GK+ H + + +  F+ +  +   LV+MYA+   + EA+ 
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAI-KTQFDSNAFVVTGLVDMYAKCKCILEAEY 194

Query: 469 VFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           +F+L   +R+ V +T+++ GY   G+G  A++ F +M    I+ +  T  ++L+AC    
Sbjct: 195 LFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSIS 254

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY-TPTSAMWAT 586
               G  Q        G    +   + +VD+Y + G L+ A+ ++  M    P S  W +
Sbjct: 255 ACGFG-AQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVS--WNS 311

Query: 587 LLGACQIHRNTGIGEWA 603
           ++  C      G+GE A
Sbjct: 312 MIVGCV---RQGLGEEA 325


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/570 (33%), Positives = 313/570 (54%), Gaps = 22/570 (3%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM-DVDFGRVVHS 199
             W +LIS + R G  A+ L ++ +MQ + +  + FT   VLK+C   + D   G+ +H 
Sbjct: 353 FSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHG 412

Query: 200 CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I     +    ++N+++  Y K      A +LF  M E+D VSWN M+S+Y   G  ++
Sbjct: 413 WILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQK 472

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           +  LF ++  +    +  +WNT+  G +R G  +  LELL +M       + +   I L 
Sbjct: 473 SVDLFRQLPGK----DAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALV 528

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK--------M 370
             S +  L LGK+IH   ++    +   VRN+LI MY +C ++  A ++FK        M
Sbjct: 529 LASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMM 588

Query: 371 TAEKSI-------ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
            +E+S        ++W+SM+SGY      E++   F  M  S VE +  T+ S++  CA 
Sbjct: 589 NSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACAS 648

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
              L+ G++ H YI ++      + L +S+++MY + G + +A  +F+    R+ V +TS
Sbjct: 649 AGVLELGRQVHGYI-QKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTS 707

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +I+G  + G+GR A++LFE M    I P+ V+ V VL+ACSH+GL+ EG K F  M  +Y
Sbjct: 708 MISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVY 767

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           GI P  EHF CMVDLYGRAG LN+ KE I     +  S++W + L +C++H+N  +G W 
Sbjct: 768 GIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWV 827

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
            +KLLE  P ++G Y+L +++ A    W++ AK+R+ M+  GV+K P  +W+   N    
Sbjct: 828 CKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHS 887

Query: 664 FLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           F++ D S+ Q  +IY  L  L   +K+ GY
Sbjct: 888 FVMGDRSHPQDTKIYSYLDELIGRLKEIGY 917



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 195/434 (44%), Gaps = 95/434 (21%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L+++Y K   ++ A ++F+++ + D  SW  +IS +A  GL  +   LF +MQ++GV 
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            N  T + +   C                                   S+V   ++GK I
Sbjct: 385 PNQFTLSIVLKSC----------------------------------SSNVNDSRIGKGI 410

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           HG  +R        + N+++  Y +C+   +A  LF + AEK  ++WN M+S Y  +   
Sbjct: 411 HGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDM 470

Query: 393 EESAFLFRE---------------MFRSGVEP----------------NYVTIASILPLC 421
           ++S  LFR+               + R+G E                 N +T +  L L 
Sbjct: 471 QKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLA 530

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR----- 476
           + ++ L  GK+ H  +L+  + ++  +  NSL++MY + G++ +A  +F  + +      
Sbjct: 531 SSLSVLGLGKQIHTQVLKVGVLDDGFVR-NSLIDMYCKCGEMEKASVIFKHLPQESSMMN 589

Query: 477 ----------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
                     + V+++S+++GY   G    ALK F  M  +Q++ D  T+ +V+SAC+ +
Sbjct: 590 SEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASA 649

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEH------FACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           G++  G++       ++G   ++ H       + ++D+Y + G LN A  +I        
Sbjct: 650 GVLELGRQ-------VHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDA-WLIFNQAKDRN 701

Query: 581 SAMWATLLGACQIH 594
             +W +++  C +H
Sbjct: 702 VVLWTSMISGCALH 715



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 97/176 (55%), Gaps = 8/176 (4%)

Query: 332 IHGSAVR-GCYGEYENVR-NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +H   ++ GC G    +R N L+ +Y++ ++L  A+ +F+   +  + +W  ++SG+  +
Sbjct: 310 LHAKLIKNGCVG----IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARI 365

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLC-ARVANLQHGKEFHCYILRRAMFNEHLL 448
             + +   LF +M   GV PN  T++ +L  C + V + + GK  H +ILR  + +   +
Sbjct: 366 GLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGL-DLDAV 424

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
           L NS+++ Y +      A+ +F LM+ +D V++  +++ Y   G+ + ++ LF ++
Sbjct: 425 LNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQL 480


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 211/663 (31%), Positives = 334/663 (50%), Gaps = 40/663 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G L +A + + R+       DV   +F  ++  CG V     G+++HA  +  G  
Sbjct: 170 YGKAGLLEEALDLYHRMMWAGVRPDVY--TFPCVLRSCGGVPDWRMGREVHAHVLRFGFA 227

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           +   ++  L+T YA       A  + ++  +   + WN +I+ +  +G     L ++  M
Sbjct: 228 EEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTM 287

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               ++ +  T  SV  A G + D+ F + +H   +       +   N+L+ MY   G +
Sbjct: 288 LQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMM 347

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR +F +M  RDA+SW  MIS Y   G   +A                          
Sbjct: 348 GQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKA-------------------------- 381

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                    LE+ + M       D +     L AC+ +G+L +G ++H  A    +  Y 
Sbjct: 382 ---------LEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYV 432

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NAL+ MY++ K +  A  +FK   EK +++W+SM++G+       E+ + FR M  +
Sbjct: 433 VVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-A 491

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            V+PN VT  + L  CA    L+ GKE H ++LR  +  E  L  N+L+++Y + G+   
Sbjct: 492 DVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLP-NALIDLYVKCGQTGY 550

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A + F     +D V++  +IAG+   G G  AL  F +M K    PD VT VA+L ACS 
Sbjct: 551 AWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSR 610

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
            G+V EG + F  MT  Y I P L+H+ACMVDL  R G L +A   I +MP TP +A+W 
Sbjct: 611 GGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWG 670

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LL  C+IHR+  +GE AA+ +LE  P ++GY+VL+ ++YA  G WDKLA+VR  MR+ G
Sbjct: 671 ALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKG 730

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEI 705
           +    GC+WV+   V   FL DD S+ Q +EI  +L G+ E MK +G    E    E+++
Sbjct: 731 LDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKASGCAPVESHSPEDKV 790

Query: 706 VEE 708
           +++
Sbjct: 791 LKD 793



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 210/448 (46%), Gaps = 49/448 (10%)

Query: 159 ALCVYKQM-------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLF 210
           ALC + Q+       +S     D   Y ++ + C     V+ G    +  D  H W  L 
Sbjct: 71  ALCSHGQLAQALWLLESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLR 130

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + NA++SM  +FG+   A R+F KM ERD                               
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERD------------------------------- 159

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
               V +WN + GG  + G  +  L+L  RM       D       L +C  V   ++G+
Sbjct: 160 ----VFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGR 215

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           E+H   +R  + E  +V NAL+TMY++C D+  A  +F   A    I+WN+M++G  H +
Sbjct: 216 EVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAG--HFE 273

Query: 391 CAEESAF--LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
             E +A   LF  M +  V+PN +TI S+      ++++   KE H   ++R  F   + 
Sbjct: 274 NGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRG-FATDVA 332

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
             NSL++MYA  G + +A++VF  M  RD +++T++I+GY   G    AL+++  M  N 
Sbjct: 333 FCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNN 392

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + PD +T+ + L+AC+  G +  G K  E   S  G    +     ++++Y ++  ++KA
Sbjct: 393 VSPDDITIASALAACACLGSLDVGVKLHELAES-KGFMSYVVVTNALLEMYAKSKRIDKA 451

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRN 596
            E+   MP     +  + + G C  HRN
Sbjct: 452 IEVFKCMPEKDVVSWSSMIAGFCFNHRN 479



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 213/450 (47%), Gaps = 50/450 (11%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIA------LGLEKNPVLVPKLVTFYASFSLYNNA 128
           D++  +   C   +A+  G  L ACA A       GL     ++  LV F  ++  +   
Sbjct: 95  DAYVALFRLCEWRRAVEPG--LRACAHADDRHAWFGLRLGNAMLSMLVRFGETWHAWRVF 152

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             + E    R    WN+++  Y + G   EAL +Y +M    +R D +T+P VL++CG +
Sbjct: 153 AKMPE----RDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGV 208

Query: 189 MDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
            D   GR VH+  +       + V NAL++MY K G V  AR++FD M   D +SWN MI
Sbjct: 209 PDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMI 268

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           + +   G      +LF+ M ++ V+ N++T                              
Sbjct: 269 AGHFENGECNAGLELFLTMLQDEVQPNLMT------------------------------ 298

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
           + SV    GL     +  +   KE+HG AV+  +       N+LI MY+    +  A  +
Sbjct: 299 ITSVTVASGL-----LSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTV 353

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F     +  ++W +M+SGY      +++  ++  M  + V P+ +TIAS L  CA + +L
Sbjct: 354 FSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSL 413

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
             G + H  +     F  ++++ N+L+EMYA+S ++ +A  VF  M  +D V+++S+IAG
Sbjct: 414 DVGVKLH-ELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAG 472

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           +        AL  F  M  + +KP+ VT +
Sbjct: 473 FCFNHRNFEALYYFRHMLAD-VKPNSVTFI 501



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 4/262 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G   KA E +  + +   S D +  + A  +  C  + +L  G +LH  A + 
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDI--TIASALAACACLGSLDVGVKLHELAESK 426

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G     V+   L+  YA     + A  + +    +  + W+ +I+ +  +    EAL  +
Sbjct: 427 GFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYF 486

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
           + M +  ++ ++ T+ + L AC     +  G+ +H+ +  C   +  ++ NAL+ +Y K 
Sbjct: 487 RHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKC 545

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           GQ   A   F     +D VSWN MI+ + + G  + A   F +M + G   + +T+  + 
Sbjct: 546 GQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALL 605

Query: 283 GGCLRTGNFKGVLELLSRMRTQ 304
             C R G      EL   M  +
Sbjct: 606 CACSRGGMVSEGWELFHSMTDK 627


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 201/618 (32%), Positives = 321/618 (51%), Gaps = 41/618 (6%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G  +H  AI  G +   +L   +V  Y  F    +A  + +    +  + WN +IS Y +
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 153 DGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-F 210
           +  Y E++ V++ + +    R D  T   +L A  E+ ++  G  +HS       +S  +
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY 257

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V    +S+Y K G++ +A  LF +    D V++N MI  Y S G  + +  LF E+    
Sbjct: 258 VLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELM--- 314

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
                     ++G  L++                       +T++ L   S  G L L  
Sbjct: 315 ----------LSGAKLKS-----------------------STLVSLVPVS--GHLMLIY 339

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
            IHG +++  +  + +V  AL T+YS+  ++  A  LF  + EKS+ +WN+M+SGYT   
Sbjct: 340 AIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             E++  LFREM  S   PN VTI  IL  CA++  L  GK  H  ++R   F   + + 
Sbjct: 400 LTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHD-LVRSTDFESSIYVS 458

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            +L+ MYA+ G + EA+ +FD M +++EVT+ ++I+GYG+ G G+ AL +F EM  + I 
Sbjct: 459 TALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIA 518

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           P  VT + VL ACSH+GLV EG + F  M   YG  P ++H+AC+VD+ GRAG L +A +
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQ 578

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
            I  MP  P  ++W TLLGAC+IH++T +    +EKL E  P+N GY+VL++N+++A   
Sbjct: 579 FIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRN 638

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           + + A VR   +   + K PG   ++ G     F   D S+ Q + I+  L  L   M++
Sbjct: 639 YPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMRE 698

Query: 691 AGYVVKEEFCSEEEIVEE 708
           AGY  + E    +   EE
Sbjct: 699 AGYQPETELALHDVEEEE 716



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 128/522 (24%), Positives = 241/522 (46%), Gaps = 64/522 (12%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS--LYNNACFL-VENSNIRYPLP 142
           +  +++   Q HA  +  G   +  L+ KL    +      Y    FL V+  ++     
Sbjct: 29  RSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDV---FL 85

Query: 143 WNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--S 199
           +N+L+  +  +     +L V+  + +S  ++ ++ TY   + A     D   G V+H  +
Sbjct: 86  FNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQA 145

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +D C +  L + + +V MY KF +V+ AR++FD+M E+D + WNTMIS Y    ++ E+
Sbjct: 146 IVDGC-DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVES 204

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            Q+F ++  E               C R                    LD+   +  L A
Sbjct: 205 IQVFRDLINE--------------SCTR--------------------LDTTTLLDILPA 230

Query: 320 CSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
            + +  L+LG +IH  A + GCY  ++ V    I++YS+C  ++ A  LF+      I+ 
Sbjct: 231 VAELQELRLGMQIHSLATKTGCYS-HDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVA 289

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           +N+M+ GYT     E S  LF+E+  SG +    T+ S++P+   +  +      H Y L
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIY---AIHGYSL 346

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
            ++ F  H  +  +L  +Y++  ++  A+ +FD    +   ++ ++I+GY   G    A+
Sbjct: 347 -KSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ------KQFERMTSIYGIFPQLEHF 552
            LF EM  ++  P+ VT+  +LSAC+  G +  G+      +  +  +SIY         
Sbjct: 406 SLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV-------S 458

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
             ++ +Y + G + +A+ +   MP       W T++    +H
Sbjct: 459 TALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGLH 499



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 194/453 (42%), Gaps = 60/453 (13%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+    +++ L  G Q+H+ A   G   +  ++   ++ Y+       A  L      R 
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFRE--FRR 284

Query: 140 P--LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           P  + +N +I  Y  +G    +L ++K++     +  + T  S++   G +M        
Sbjct: 285 PDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLM-------- 336

Query: 198 HSCIDACHEWSL--------FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
              I A H +SL         V  AL ++Y K  +++ AR+LFD+  E+   SWN MIS 
Sbjct: 337 --LIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           Y   GL ++A  LF EMQ      N +T   I                            
Sbjct: 395 YTQNGLTEDAISLFREMQNSEFSPNPVTITCI---------------------------- 426

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
                  L AC+ +GAL LGK +H       +     V  ALI MY++C  +  A  LF 
Sbjct: 427 -------LSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
              +K+ +TWN+M+SGY      +E+  +F EM  SG+ P  VT   +L  C+    ++ 
Sbjct: 480 FMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKE 539

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGY 488
           G E    ++ R  F   +  +  +V++  R+G +  A    + M  +     + +L+   
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGAC 599

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            I  +  +A  + E++   ++ PD+V    +LS
Sbjct: 600 RIHKDTNLARTVSEKL--FELDPDNVGYHVLLS 630


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 336/615 (54%), Gaps = 36/615 (5%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C +   +  G   H  A+ LGL     +   L+  Y+       A  L + +N + 
Sbjct: 305 VIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKN 363

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
            + WN +I  Y +D  +  A  + ++MQ   +++ +  T  +VL  C E  ++ F +   
Sbjct: 364 VISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEE--EIQFLK--- 418

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +   H ++L                   R  F   ++ D +  N  ++ YA  G    
Sbjct: 419 --LKEIHGYAL-------------------RHGF---IQSDELVANAFVAGYAKCGSLHY 454

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  +F  M+ + V     +WN + GG ++ G  +  L+L   MR      D       L 
Sbjct: 455 AEGVFCGMESKMVS----SWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLS 510

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ + +L  GKEIHGS +R  +   E +  +L+++Y +C  +  A + F    EK+++ 
Sbjct: 511 ACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVC 570

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M++G++  +   ++  +F +M  S + P+ ++I   L  C++V+ L+ GKE HC+ +
Sbjct: 571 WNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAV 630

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           + +   EH  +  SL++MYA+ G + +++++FD +  + EVT+  LI GYGI G GR A+
Sbjct: 631 K-SHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAI 689

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LF+ M     +PD VT +A+L+AC+H+GLV EG +   +M S++GI P+LEH+AC+VD+
Sbjct: 690 ELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDM 749

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG LN+A E++ ++P  P S +W++LL +C+ +R+  IGE  A KLLE  P+ +  Y
Sbjct: 750 LGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENY 809

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VLI+N YA  G WD++ K+R  M+++G++K  GC+W++ G   S FLV D S +Q+ +I 
Sbjct: 810 VLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQ 869

Query: 679 PLLGGLTELMKDAGY 693
                L + +   GY
Sbjct: 870 QTWIELEKKINKIGY 884



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 175/587 (29%), Positives = 284/587 (48%), Gaps = 55/587 (9%)

Query: 18  LEKFIPKKWKQ---PINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRI--RITAASHDV 72
              F P K      PI + H  + N  +   +    GNL++AF         + ++S+  
Sbjct: 32  FHSFTPPKSSHLFSPIISSHKKQQNASKHFHNLCNTGNLNQAFNFLQSNLNDVVSSSNSK 91

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHA-CAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
                  ++  CG+ K +  G+++H   + +   + + VL+ +LVT Y+      ++C +
Sbjct: 92  PKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLV 151

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMD 190
              S  +    WN L+S Y+R+  + +A+ V+ +M S      DNFT P V+KAC  + D
Sbjct: 152 FNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYD 211

Query: 191 VDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           V  G  VH         S +FV NAL++MYGKFG V+ A ++FDKM +R+ VSWN+++ A
Sbjct: 212 VRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYA 271

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
               G+++E++                            G FKG+L         E  + 
Sbjct: 272 CLENGVFEESY----------------------------GLFKGLL------NGDEGLMP 297

Query: 310 SVATVIG-LGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYIL 367
            VAT++  +  C+  G ++LG   HG A++ G  GE + V ++L+ MYS+C  L  A +L
Sbjct: 298 DVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELK-VNSSLLDMYSKCGYLCEARVL 356

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFREM-FRSGVEPNYVTIASILPLCARVA 425
           F  T EK++I+WNSM+ GY+  D     AF L R+M     V+ N VT+ ++LP+C    
Sbjct: 357 FD-TNEKNVISWNSMIGGYSK-DRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEI 414

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
                KE H Y LR        L+ N+ V  YA+ G +  A+ VF  M  +   ++ +LI
Sbjct: 415 QFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALI 474

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
            G+   G  R AL L+  M  + ++PD  T+ ++LSAC+    +  G+   E   S+   
Sbjct: 475 GGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGK---EIHGSMLRN 531

Query: 546 FPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             +L+ F C  +V LY + G +  AK     M        W T++  
Sbjct: 532 GFELDEFICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMING 577



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA + +  +R +    D  L + A ++  C ++K+L+ GK++H   +  G E +  +   
Sbjct: 485 KALDLYLLMRGSGLEPD--LFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICIS 542

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV+ Y        A    +N   +  + WN +I+ + ++ F  +AL ++ QM S +I  D
Sbjct: 543 LVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPD 602

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLF 232
             +    L AC ++  +  G+ +H      H  E S FV  +L+ MY K G ++ ++ +F
Sbjct: 603 EISIIGALGACSQVSALRLGKELHCFAVKSHLTEHS-FVTCSLIDMYAKCGCMEQSQNIF 661

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D++  +  V+WN +I+ Y   G  ++A +LF  MQ  G   + +T+  +   C   G   
Sbjct: 662 DRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVA 721

Query: 293 GVLELLSRMRT 303
             LE L +M++
Sbjct: 722 EGLEYLGQMQS 732



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 15/185 (8%)

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           I  +L LC    N++ G++ H +I     F   ++L   LV MY+      ++  VF+  
Sbjct: 96  IGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNAS 155

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEG 532
            R++   + +L++GY      R A+ +F EM +  +  PD+ T+  V+ AC     V  G
Sbjct: 156 RRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLG 215

Query: 533 QKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           +       +++G   + +  +       ++ +YG+ G +  A ++  KMP     + W +
Sbjct: 216 E-------AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVS-WNS 267

Query: 587 LLGAC 591
           ++ AC
Sbjct: 268 VMYAC 272


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/620 (30%), Positives = 328/620 (52%), Gaps = 39/620 (6%)

Query: 38   INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
            ++ +  ++  A RG   +A   F R+R     H+V       ++     +  L     +H
Sbjct: 497  VSFVTLVQGHALRGEFEEASALFQRLRWEG--HEVNQFVLTTVLKLVVAMDTLGLAWGVH 554

Query: 98   ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
            ACA  LG ++N  +   L+  Y+   + ++A  + +    +  + W  ++S Y  +    
Sbjct: 555  ACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPE 614

Query: 158  EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALV 216
              L ++ +M+    + + F   SVL+A   +  V  G+ +H+C +   ++    V+ AL+
Sbjct: 615  NTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALL 674

Query: 217  SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
             MY K G ++ AR  F+ +   D + W+ MIS YA     ++AF+LF+ M    V  N  
Sbjct: 675  DMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPN-- 732

Query: 277  TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
                                        E  L SV     L AC+++  L LGK+IH  A
Sbjct: 733  ----------------------------EFSLSSV-----LQACANMPLLDLGKQIHNHA 759

Query: 337  VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
            ++  +     V NALI +Y++C D+  +  +F    + + ++WN+++ GY+     E + 
Sbjct: 760  IKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAAL 819

Query: 397  FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
             +FREM  + V    VT +S+L  CA  A++ H  + HC I  ++ FN   ++ NSL++ 
Sbjct: 820  SVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLI-EKSTFNSDTIVSNSLIDS 878

Query: 457  YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
            YA+ G + +A+ +F+ +   D V++ ++I+GY + G+  +A +LF+ M+KN IK + +T 
Sbjct: 879  YAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITF 938

Query: 517  VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
            VA+LS C  +GLV +G   F+ M   +GI P +EH+ C+V L GRAG LN A   I  +P
Sbjct: 939  VALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIP 998

Query: 577  YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
              P++ +W  LL +C +H+N  +G ++AEK+LE  P++   YVL++NMY+A G  D++A 
Sbjct: 999  SAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAF 1058

Query: 637  VRTCMRDLGVRKIPGCAWVD 656
             R  MR++GVRK PG +WV+
Sbjct: 1059 FRKSMRNIGVRKEPGLSWVE 1078



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 229/505 (45%), Gaps = 49/505 (9%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  Y     + +A  + +    R  + +  L+  +   G + EA  ++++++      +
Sbjct: 471 LLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVN 530

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDAC---HEWSLFVHNALVSMYGKFGQVDVARRL 231
            F   +VLK    M  +     VH+C  AC   H+ + FV +AL+  Y   G V  ARR+
Sbjct: 531 QFVLTTVLKLVVAMDTLGLAWGVHAC--ACKLGHDRNAFVGSALIDAYSMCGVVSDARRV 588

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           FD ++ +DAV+W  M+S Y+     +   Q+F                            
Sbjct: 589 FDGIVGKDAVAWTAMVSCYSENDCPENTLQIF---------------------------- 620

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
                  S+MR   + L+  A    L A   + ++ LGK IH  +V+  Y    +V  AL
Sbjct: 621 -------SKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGAL 673

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           + MY++C ++  A + F+M     +I W+ M+S Y   +  E++  LF  M RS V PN 
Sbjct: 674 LDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNE 733

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            +++S+L  CA +  L  GK+ H + ++    +E L + N+L+++YA+   +  +  +F 
Sbjct: 734 FSLSSVLQACANMPLLDLGKQIHNHAIKIGHESE-LFVGNALIDLYAKCSDMESSLEIFS 792

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +   +EV++ ++I GY   G G  AL +F EM    +    VT  +VL AC+ +  +  
Sbjct: 793 SLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINH 852

Query: 532 -GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            GQ       S +     + +   ++D Y + G +  A+EI   +      + W  ++  
Sbjct: 853 VGQVHCLIEKSTFNSDTIVSN--SLIDSYAKCGCIRDAREIFETLKECDLVS-WNAIISG 909

Query: 591 CQIHRNTGIGEWAAEKLLETRPENS 615
             +H    +    A++L +   +NS
Sbjct: 910 YAVHGQAAM----AQELFDMMSKNS 930



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 214/472 (45%), Gaps = 50/472 (10%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           D++ Y  +L+ C    D   GR VH  +          LF  N L++MY K G    A R
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +FD + ER+ VS+ T++  +A +G ++EA  LF  ++ EG EVN     T          
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTT---------- 536

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
              VL+L+  M T           +GL    H  A KLG +      R  +     V +A
Sbjct: 537 ---VLKLVVAMDT-----------LGLAWGVHACACKLGHD------RNAF-----VGSA 571

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI  YS C  +  A  +F     K  + W +M+S Y+  DC E +  +F +M  +  + N
Sbjct: 572 LIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLN 631

Query: 411 YVTIASILPLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
              + S+L     ++++  GK  H C +  + +++    ++ +L++MYA+ G + +A+  
Sbjct: 632 PFALTSVLRAAVCLSSVVLGKGIHACSV--KTLYDTERHVYGALLDMYAKCGNIEDARLA 689

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F++++  D + ++ +I+ Y    +   A +LF  M ++ + P+  ++ +VL AC++  L+
Sbjct: 690 FEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLL 749

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
             G KQ        G   +L     ++DLY +   +  + EI + +        W T++ 
Sbjct: 750 DLG-KQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSL-RDVNEVSWNTIIV 807

Query: 590 ACQIHRNTGIGEWAAEKLLETR----PENSGYYVLIANMYAATGCWDKLAKV 637
               +  +G GE A     E R    P     Y  +    A+T   + + +V
Sbjct: 808 G---YSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQV 856



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 126/273 (46%), Gaps = 9/273 (3%)

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYE-NVRNALITMYSRCKDLRHAY 365
           +DS A    L  C   G  + G+ +HG  VR G     +    N L+ MY++      A+
Sbjct: 426 VDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAH 485

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F    E++++++ +++ G+      EE++ LF+ +   G E N   + ++L L   + 
Sbjct: 486 RVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMD 545

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            L      H    +    + +  + ++L++ Y+  G V +A+ VFD +  +D V +T+++
Sbjct: 546 TLGLAWGVHACACKLG-HDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMV 604

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
           + Y         L++F +M     K +   + +VL A      VV G+       S+  +
Sbjct: 605 SCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGI--HACSVKTL 662

Query: 546 FPQLEH-FACMVDLYGRAGLLNKAK---EIITK 574
           +    H +  ++D+Y + G +  A+   E++T 
Sbjct: 663 YDTERHVYGALLDMYAKCGNIEDARLAFEMVTN 695


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 210/620 (33%), Positives = 322/620 (51%), Gaps = 40/620 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLV-PKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           C  ++ L  GK +H  A       + + V   LV  Y+       A  + E       + 
Sbjct: 113 CAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVL 172

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHS-C 200
           W  +++ Y ++    EAL ++ QM     +  D  T  SV+ AC ++++V  G  VH   
Sbjct: 173 WTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLV 232

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           I    +  L + N+L+++Y K G   +A  LF KM E+D +SW+TMI+ YA+     EA 
Sbjct: 233 IRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEAL 292

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            LF EM E+  E N                                   SV  V  L AC
Sbjct: 293 NLFHEMIEKRFEPN-----------------------------------SVTVVSALQAC 317

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           +    L+ GK+IH  AV   +    +V  ALI MY +C     A  LF+   +K +++W 
Sbjct: 318 AVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWV 377

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           ++LSGY     A +S  +FR M   G++P+ V +  IL   + +   Q     H Y++R 
Sbjct: 378 ALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS 437

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
             FN ++ +  SL+E+Y++ G + +A  +F  M  RD V ++S+IA YGI G G  AL++
Sbjct: 438 G-FNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEI 496

Query: 501 FEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           F++M KN  ++P++VT +++LSACSH+GLV EG K F+RM   Y + P  EHF  MVDL 
Sbjct: 497 FDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLL 556

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
           GR G L KA +II +MP      +W  LLGAC+IH N  +GE AA+ L    P ++GYY+
Sbjct: 557 GRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYI 616

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++N+YA  G WD +A++RT +++ G++K+ G + V+       FL  D  +  +Q+IY 
Sbjct: 617 LLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYE 676

Query: 680 LLGGLTELMKDAGYVVKEEF 699
           LL  L   M    Y+   +F
Sbjct: 677 LLRKLEAQMGKEVYIPDLDF 696



 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 163/423 (38%), Positives = 247/423 (58%), Gaps = 3/423 (0%)

Query: 278  WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
            WN +  G    G F   LEL S+M  +    D  A    L +C+ +  L+ GK IH   V
Sbjct: 786  WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845

Query: 338  R-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
              GC  +   V  AL+ MY++C D+  A ++F   A + +++W SM+SGY H     E+ 
Sbjct: 846  CCGCSNDL-FVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETL 904

Query: 397  FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
              F  M  SGV PN V+I S+L  C  +  L+ G+ FH Y+++   F   +L+  ++++M
Sbjct: 905  GFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTG-FEFDILVATAIMDM 963

Query: 457  YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
            Y++ G +  A+ +FD  + +D V ++++IA YGI G GR A+ LF++M K  ++P HVT 
Sbjct: 964  YSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTF 1023

Query: 517  VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
              VLSACSHSGL+ EG+  F+ MT  + I  +L ++ACMVDL GRAG L++A ++I  MP
Sbjct: 1024 TCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMP 1083

Query: 577  YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
              P +++W +LLGAC+IH N  + E  A+ L    P ++GY+VL++N+YAA   W+++ K
Sbjct: 1084 VEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEK 1143

Query: 637  VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVK 696
            VR  M   G  KI G + V+  N    F V D S+ Q +++Y  L  L   MK  GYV  
Sbjct: 1144 VRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPL 1203

Query: 697  EEF 699
             +F
Sbjct: 1204 TDF 1206



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 199/430 (46%), Gaps = 39/430 (9%)

Query: 94   KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
            K+ HA   A GL+ +  ++ K    Y SF+  + A  + E+        WN++I  +  D
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 154  GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVH 212
            G +  +L +Y +M  + ++ D F +P  LK+C  + D+  G+V+H  +  C     LFV 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 213  NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
             ALV MY K G ++ AR +FDKM  RD VSW +MIS YA  G   E    F  M+  GV 
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 273  VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
             N ++  ++                                   L AC ++GAL+ G+  
Sbjct: 917  PNRVSILSV-----------------------------------LLACGNLGALRKGEWF 941

Query: 333  HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
            H   ++  +     V  A++ MYS+C  L  A  LF  TA K ++ W++M++ Y      
Sbjct: 942  HSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHG 1001

Query: 393  EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
             ++  LF +M ++GV P++VT   +L  C+    L+ GK +   +    +    L  +  
Sbjct: 1002 RKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYAC 1061

Query: 453  LVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            +V++  R+G++ EA  + + M    D   + SL+    I     +A K+ + +    + P
Sbjct: 1062 MVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHL--FHLDP 1119

Query: 512  DHVTMVAVLS 521
             H     +LS
Sbjct: 1120 VHAGYHVLLS 1129



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/544 (25%), Positives = 246/544 (45%), Gaps = 63/544 (11%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP----WNLLISLY 150
           QLH+     G+  +     KL + YA  +    A  + + +    P P    WN  +  Y
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET----PHPNVHLWNSTLRSY 77

Query: 151 VRDGFYAEALCVYKQMQSRRIRG-DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-- 207
            R+  + E L ++  M        DNFT P  LKAC  +  ++ G+V+H       E   
Sbjct: 78  CREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGS 137

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            +FV +ALV +Y K GQ+  A ++F++    D V W +M++ Y      +EA  LF +M 
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQM- 196

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                        +   C+                     LD V  V  + AC+ +  +K
Sbjct: 197 -------------VMMDCV--------------------VLDPVTLVSVVSACAQLLNVK 223

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G  +HG  +R  +     + N+L+ +Y++    + A  LF    EK +I+W++M++ Y 
Sbjct: 224 AGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYA 283

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
           + + A E+  LF EM     EPN VT+ S L  CA   NL+ GK+ H   + +  F    
Sbjct: 284 NNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKG-FELDF 342

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            +  +L++MY +     EA  +F  + ++D V++ +L++GY   G    ++ +F  M  +
Sbjct: 343 SVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSD 402

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF------PQLEHFACMVDLYGR 561
            I+PD V +V +L+A S  G+       F++   ++G          +   A +++LY +
Sbjct: 403 GIQPDAVAVVKILAASSELGI-------FQQALCLHGYVVRSGFNSNVFVGASLIELYSK 455

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET---RPENSGYY 618
            G L  A ++   M       +W++++ A  IH   G      +++++    RP N  + 
Sbjct: 456 CGSLGDAVKLFKGMIVRDV-VIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFL 514

Query: 619 VLIA 622
            +++
Sbjct: 515 SILS 518



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 179/411 (43%), Gaps = 49/411 (11%)

Query: 72  VVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           VVLD  +   ++  C ++  +  G  +H   I    + +  LV  L+  YA       A 
Sbjct: 202 VVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAA 261

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            L      +  + W+ +I+ Y  +    EAL ++ +M  +R   ++ T  S L+AC    
Sbjct: 262 NLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSR 321

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           +++ G+ +H   +    E    V  AL+ MY K    D A  LF ++ ++D VSW  ++S
Sbjct: 322 NLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLS 381

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            YA  G+  ++  +F  M  +G++                                    
Sbjct: 382 GYAQNGMAYKSMGVFRNMLSDGIQP----------------------------------- 406

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           D+VA V  L A S +G  +    +HG  VR  +     V  +LI +YS+C  L  A  LF
Sbjct: 407 DAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLF 466

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANL 427
           K    + ++ W+SM++ Y       E+  +F +M + S V PN VT  SIL  C+    +
Sbjct: 467 KGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLV 526

Query: 428 QHG-----KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           + G     +  H Y LR    +EH   +  +V++  R G++ +A  + + M
Sbjct: 527 EEGLKIFDRMVHDYQLRPD--SEH---FGIMVDLLGRIGQLGKAMDIINRM 572



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 3/247 (1%)

Query: 44   LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
            ++ FA  G    + E ++++       D     FA  +  C  +  L +GK +H   +  
Sbjct: 790  IRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFA--LKSCAGLSDLQRGKVIHQHLVCC 847

Query: 104  GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            G   +  +   LV  YA       A  + +   +R  + W  +IS Y  +G+ +E L  +
Sbjct: 848  GCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFF 907

Query: 164  KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
              M+S  +  +  +  SVL ACG +  +  G   HS  I    E+ + V  A++ MY K 
Sbjct: 908  DLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKC 967

Query: 223  GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            G +D+AR LFD+   +D V W+ MI++Y   G  ++A  LF +M + GV  + +T+  + 
Sbjct: 968  GSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVL 1027

Query: 283  GGCLRTG 289
              C  +G
Sbjct: 1028 SACSHSG 1034



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 95/209 (45%), Gaps = 5/209 (2%)

Query: 44   LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
            +  +A  G  S+    F  +R +    + V  S   ++  CG + AL +G+  H+  I  
Sbjct: 891  ISGYAHNGYNSETLGFFDLMRSSGVIPNRV--SILSVLLACGNLGALRKGEWFHSYVIQT 948

Query: 104  GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            G E + ++   ++  Y+     + A  L + +  +  + W+ +I+ Y   G   +A+ ++
Sbjct: 949  GFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLF 1008

Query: 164  KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGK 221
             QM    +R  + T+  VL AC     ++ G++    +  +      L  +  +V + G+
Sbjct: 1009 DQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGR 1068

Query: 222  FGQVDVARRLFDKM-LERDAVSWNTMISA 249
             GQ+  A  L + M +E DA  W +++ A
Sbjct: 1069 AGQLSEAVDLIENMPVEPDASIWGSLLGA 1097



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 106/566 (18%), Positives = 197/566 (34%), Gaps = 88/566 (15%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
           ++ +  L  +A  G   K+   F  +       D V  +   I+    ++    Q   LH
Sbjct: 374 VSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAV--AVVKILAASSELGIFQQALCLH 431

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
              +  G   N  +   L+  Y+      +A  L +   +R  + W+ +I+ Y   G   
Sbjct: 432 GYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGG 491

Query: 158 EALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALV 216
           EAL ++ QM ++  +R +N T               F  ++ +C  A             
Sbjct: 492 EALEIFDQMVKNSTVRPNNVT---------------FLSILSACSHA------------- 523

Query: 217 SMYGKFGQVDVARRLFDKM-----LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
                 G V+   ++FD+M     L  D+  +  M+      G   +A  +   M    +
Sbjct: 524 ------GLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMP---I 574

Query: 272 EVNVITWNTIAGGCLRTGNFK-----------------GVLELLSRMRTQETYLDSVATV 314
                 W  + G C    N +                 G   LLS +   +   D+VA  
Sbjct: 575 PAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVA-- 632

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGE-YENVRNALITMYSRCK---DLRHAY-ILFK 369
                       +L   I    ++  +G+    VR  + +  +  +   D +  Y +L K
Sbjct: 633 ------------ELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRK 680

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
           + A+     +   L    H    +  A L         E  Y TI S  P    ++    
Sbjct: 681 LEAQMGKEVYIPDLDFLLH----DTGAVLQFWQRIKATESKYKTIGSA-PGTDTISCFSC 735

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
            K+ H  I    +  +  +L      MY    ++  A  VF+ +       +  +I G+ 
Sbjct: 736 LKKTHAKIFAYGLQYDSRIL-TKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G    +L+L+ +M +  +KPD       L +C+    +  G+   + +    G    L
Sbjct: 795 TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCC-GCSNDL 853

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKM 575
              A +VD+Y + G +  A+ +  KM
Sbjct: 854 FVDAALVDMYAKCGDIEAARLVFDKM 879


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 327/622 (52%), Gaps = 43/622 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---SFSLYNNACFLV 132
           S+A     C  +  L  G+QLHA AI      + V+   +V  YA   S +    A F +
Sbjct: 252 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGL 311

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
            N  +      N ++   VR G   EA+ +++ M    IR D  +   V  AC E     
Sbjct: 312 PNHTVETS---NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYF 368

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G+ VH   I +  +  + V+NA++ +YGK   +  A  +F  M ++D+VSWN +I+A  
Sbjct: 369 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALE 428

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G + +    F EM   G++ +  T+ ++                              
Sbjct: 429 QNGHYDDTILHFNEMLRFGMKPDDFTYGSV------------------------------ 458

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                L AC+ + +L+ G  +H   ++   G    V + ++ MY +C  +  A  L    
Sbjct: 459 -----LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 513

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             + +++WN++LSG++    +EE+   F EM   G++P++ T A++L  CA +A ++ GK
Sbjct: 514 GGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGK 573

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  I+++ M ++  +  ++LV+MYA+ G +P++  VF+ + +RD V++ ++I GY + 
Sbjct: 574 QIHGQIIKQEMLDDEYI-SSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALH 632

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G  AL++FE M K  + P+H T VAVL ACSH GL  +G + F  MT+ Y + PQLEH
Sbjct: 633 GLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEH 692

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           FACMVD+ GR+    +A + I  MP+   + +W TLL  C+I ++  I E AA  +L   
Sbjct: 693 FACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLD 752

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P++S  Y+L++N+YA +G W  +++ R  ++   ++K PGC+W++  +    FLV D ++
Sbjct: 753 PDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAH 812

Query: 672 VQAQEIYPLLGGLTELMKDAGY 693
            ++ E+Y +L  L   MK +GY
Sbjct: 813 PRSGELYEMLNDLIGEMKLSGY 834



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/524 (23%), Positives = 233/524 (44%), Gaps = 52/524 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +  RG   ++ + F  +     S D    +FA ++  C  ++ L+ G Q+HA A+  GLE
Sbjct: 124 YCQRGMFQESVDLFVEMARRGVSPDRT--TFAVLLKSCSALEELSLGVQVHALAVKTGLE 181

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +      LV  Y      ++A         R  + W   I+  V++  Y   L ++ +M
Sbjct: 182 IDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 241

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q   +     +Y S  ++C  M  ++ GR +H+  I         V  A+V +Y K   +
Sbjct: 242 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 301

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             ARR F  +      + N M+      GL  EA  LF  M    +  +V++ + +   C
Sbjct: 302 TDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 361

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
             T   KG  +                                G+++H  A++  +    
Sbjct: 362 AET---KGYFQ--------------------------------GQQVHCLAIKSGFDVDI 386

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NA++ +Y +CK L  AY++F+   +K  ++WN++++        +++   F EM R 
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G++P+  T  S+L  CA + +L++G   H  +++  + ++  +  +++V+MY + G + E
Sbjct: 447 GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVA-STVVDMYCKCGIIDE 505

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ + D +  +  V++ ++++G+ +  E   A K F EM    +KPDH T   VL  C++
Sbjct: 506 AQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 565

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHF------ACMVDLYGRAG 563
              +  G++       I+G   + E        + +VD+Y + G
Sbjct: 566 LATIELGKQ-------IHGQIIKQEMLDDEYISSTLVDMYAKCG 602



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 197/422 (46%), Gaps = 29/422 (6%)

Query: 191 VDFGRVVHSCIDACHEW------------------SLFVHNALVSMYGKFGQVDVARRLF 232
           V F RV  SC  A  E                   + FV N L+ MY +      ARR+F
Sbjct: 16  VTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACARRVF 75

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D M  RD VSWNTM++AY+  G    A  LF  M +     +V++WN +  G  + G F+
Sbjct: 76  DAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP----DVVSWNALVSGYCQRGMFQ 131

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NA 350
             ++L   M  +    D     + L +CS +  L LG ++H  AV+   G   +VR  +A
Sbjct: 132 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVK--TGLEIDVRTGSA 189

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           L+ MY +C+ L  A   F    E++ ++W + ++G    +       LF EM R G+  +
Sbjct: 190 LVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVS 249

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             + AS    CA ++ L  G++ H + ++   F+   ++  ++V++YA++  + +A+  F
Sbjct: 250 QPSYASAFRSCAAMSCLNTGRQLHAHAIKNK-FSSDRVVGTAIVDVYAKANSLTDARRAF 308

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
             +      T  +++ G    G G  A+ LF+ M ++ I+ D V++  V SAC+ +    
Sbjct: 309 FGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYF 368

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +GQ Q   +    G    +     ++DLYG+   L +A  I   M     S  W  ++ A
Sbjct: 369 QGQ-QVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAA 426

Query: 591 CQ 592
            +
Sbjct: 427 LE 428



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 199/432 (46%), Gaps = 38/432 (8%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN L+S Y + G + E++ ++ +M  R +  D  T+  +LK+C  + ++  G  VH+ 
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 174

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    E  +   +ALV MYGK   +D A   F  M ER+ VSW   I+       +   
Sbjct: 175 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRG 234

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF+EMQ  G+ V                             +Q +Y  +        +
Sbjct: 235 LELFIEMQRLGLGV-----------------------------SQPSYASA------FRS 259

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +  L  G+++H  A++  +     V  A++ +Y++   L  A   F      ++ T 
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+ G        E+  LF+ M RS +  + V+++ +   CA       G++ HC  ++
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 379

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              F+  + + N+++++Y +   + EA  +F  M ++D V++ ++IA     G     + 
Sbjct: 380 SG-FDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 438

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            F EM +  +KPD  T  +VL AC+    +  G    +++    G+       + +VD+Y
Sbjct: 439 HFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMY 497

Query: 560 GRAGLLNKAKEI 571
            + G++++A+++
Sbjct: 498 CKCGIIDEAQKL 509


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 207/653 (31%), Positives = 324/653 (49%), Gaps = 92/653 (14%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY------ 139
           K K++ Q KQ+H+  I +GL  +P+   +++ F          C   E+  + Y      
Sbjct: 16  KCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAF----------CCAHESGKMIYARQVFD 65

Query: 140 --PLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             P P    WN +I  Y R       + +Y  M +  I+ D FT+P +LK     M + +
Sbjct: 66  AIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQY 125

Query: 194 GRVV-HSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G+V+ +  +    + +LFV  A + M+     VD+AR++FD                   
Sbjct: 126 GKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDM------------------ 167

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                            G    V+TWN +  G  R   FK    L   M  +    +SV 
Sbjct: 168 -----------------GDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVT 210

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            V+ L ACS +  L+ GK I+     G       + N LI M++ C ++  A  +F    
Sbjct: 211 LVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMK 270

Query: 373 EKSIITWNSMLSGYTHL---DCAE----------------------------ESAFLFRE 401
            + +I+W S+++G+ ++   D A                             E+  LFRE
Sbjct: 271 NRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFRE 330

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  S V+P+  T+ SIL  CA +  L+ G+    YI + ++ N+   + N+L++MY + G
Sbjct: 331 MQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKND-TFVGNALIDMYFKCG 389

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            V +AK VF  M  +D+ T+T++I G  I G G  AL +F  M +  I PD +T + VL 
Sbjct: 390 NVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLC 449

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           AC+H+G+V +GQ  F  MT  +GI P + H+ CMVDL GRAG L +A E+I  MP  P S
Sbjct: 450 ACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNS 509

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
            +W +LLGAC++H+N  + E AA+++LE  PEN   YVL+ N+YAA   W+ L +VR  M
Sbjct: 510 IVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLM 569

Query: 642 RDLGVRKIPGCAWVD-AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
            + G++K PGC+ ++  GNV+  F+  D S+ Q++EIY  L  + + +  AGY
Sbjct: 570 MERGIKKTPGCSLMELNGNVYE-FVAGDQSHPQSKEIYAKLENMMQDLIKAGY 621


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 197/621 (31%), Positives = 313/621 (50%), Gaps = 54/621 (8%)

Query: 79  HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIR 138
           H I      K +A  +++ A  I  G + N  + P +VT +       +A  L ++    
Sbjct: 27  HFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDH---- 82

Query: 139 YPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           +P P    WN +   Y  + FY E + ++ +M+S  +R + FT+P VLK+C ++     G
Sbjct: 83  FPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG 142

Query: 195 RVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             +H   I    E + FV   L+ +Y     +  A +LF  MLER+ V+W +MIS Y   
Sbjct: 143 EEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILC 202

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                A +LF    +   E +V+ WN +  G +  G+ K   +L   M     Y D+++ 
Sbjct: 203 NRVALARRLF----DLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTM----PYRDTMSW 254

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                                              N ++  Y+   D+     LF+   E
Sbjct: 255 -----------------------------------NTMLNGYANNGDVEACEQLFEEMPE 279

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKE 432
           +++ +WN ++ GY H  C  E    F+ M   G V PN  T+ ++L  CAR+  L  GK 
Sbjct: 280 RNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKW 339

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H Y      F   + + N+L++MY++ G +  A  VF+ M  +D +T+ S+I G    G
Sbjct: 340 VHVYAATIG-FKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHG 398

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G  AL LF +M  N  KPD +T + VL +C+H GLV EG   F  M + Y I PQ+EH+
Sbjct: 399 CGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHY 458

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CMVDL+GRAGLL++A E + +MP    + +WA LLGAC+I++N  + E A +KL+   P
Sbjct: 459 GCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEP 518

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           +N   YVL++N+Y   G W  +A+++  MRD G +K+PGC+ ++  +    F   D  + 
Sbjct: 519 KNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHS 578

Query: 673 QAQEIYPLLGGLTELMKDAGY 693
           Q++EIY +L GL +L++  GY
Sbjct: 579 QSKEIYGVLKGLMKLLRSFGY 599


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 327/622 (52%), Gaps = 43/622 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---SFSLYNNACFLV 132
           S+A     C  +  L  G+QLHA AI      + V+   +V  YA   S +    A F +
Sbjct: 252 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGL 311

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
            N  +      N ++   VR G   EA+ +++ M    IR D  +   V  AC E     
Sbjct: 312 PNHTVETS---NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYF 368

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G+ VH   I +  +  + V+NA++ +YGK   +  A  +F  M ++D+VSWN +I+A  
Sbjct: 369 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALE 428

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G + +    F EM   G++ +  T+ ++                              
Sbjct: 429 QNGHYDDTILHFNEMLRFGMKPDDFTYGSV------------------------------ 458

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                L AC+ + +L+ G  +H   ++   G    V + ++ MY +C  +  A  L    
Sbjct: 459 -----LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 513

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             + +++WN++LSG++    +EE+   F EM   G++P++ T A++L  CA +A ++ GK
Sbjct: 514 GGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGK 573

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  I+++ M ++  +  ++LV+MYA+ G +P++  VF+ + +RD V++ ++I GY + 
Sbjct: 574 QIHGQIIKQEMLDDEYI-SSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALH 632

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G  AL++FE M K  + P+H T VAVL ACSH GL  +G + F  MT+ Y + PQLEH
Sbjct: 633 GLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEH 692

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           FACMVD+ GR+    +A + I  MP+   + +W TLL  C+I ++  I E AA  +L   
Sbjct: 693 FACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLD 752

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P++S  Y+L++N+YA +G W  +++ R  ++   ++K PGC+W++  +    FLV D ++
Sbjct: 753 PDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAH 812

Query: 672 VQAQEIYPLLGGLTELMKDAGY 693
            ++ E+Y +L  L   MK +GY
Sbjct: 813 PRSGELYEMLNDLIGEMKLSGY 834



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/524 (23%), Positives = 233/524 (44%), Gaps = 52/524 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +  RG   ++ + F  +     S D    +FA ++  C  ++ L+ G Q+HA A+  GLE
Sbjct: 124 YCQRGMFQESVDLFVEMARRGVSPDRT--TFAVLLKSCSALEELSLGVQVHALAVKTGLE 181

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +      LV  Y      ++A         R  + W   I+  V++  Y   L ++ +M
Sbjct: 182 IDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 241

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q   +     +Y S  ++C  M  ++ GR +H+  I         V  A+V +Y K   +
Sbjct: 242 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 301

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             ARR F  +      + N M+      GL  EA  LF  M    +  +V++ + +   C
Sbjct: 302 TDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 361

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
             T   KG  +                                G+++H  A++  +    
Sbjct: 362 AET---KGYFQ--------------------------------GQQVHCLAIKSGFDVDI 386

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NA++ +Y +CK L  AY++F+   +K  ++WN++++        +++   F EM R 
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G++P+  T  S+L  CA + +L++G   H  +++  + ++  +  +++V+MY + G + E
Sbjct: 447 GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVA-STVVDMYCKCGIIDE 505

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ + D +  +  V++ ++++G+ +  E   A K F EM    +KPDH T   VL  C++
Sbjct: 506 AQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 565

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHF------ACMVDLYGRAG 563
              +  G++       I+G   + E        + +VD+Y + G
Sbjct: 566 LATIELGKQ-------IHGQIIKQEMLDDEYISSTLVDMYAKCG 602



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 197/422 (46%), Gaps = 29/422 (6%)

Query: 191 VDFGRVVHSCIDACHEW------------------SLFVHNALVSMYGKFGQVDVARRLF 232
           V F RV  SC  A  E                   + FV N L+ MY +      ARR+F
Sbjct: 16  VTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAACARRVF 75

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D M  RD VSWNTM++AY+  G    A  LF  M +     +V++WN +  G  + G F+
Sbjct: 76  DAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP----DVVSWNALVSGYCQRGMFQ 131

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NA 350
             ++L   M  +    D     + L +CS +  L LG ++H  AV+   G   +VR  +A
Sbjct: 132 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVK--TGLEIDVRTGSA 189

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           L+ MY +C+ L  A   F    E++ ++W + ++G    +       LF EM R G+  +
Sbjct: 190 LVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVS 249

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             + AS    CA ++ L  G++ H + ++   F+   ++  ++V++YA++  + +A+  F
Sbjct: 250 QPSYASAFRSCAAMSCLNTGRQLHAHAIKNK-FSSDRVVGTAIVDVYAKANSLTDARRAF 308

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
             +      T  +++ G    G G  A+ LF+ M ++ I+ D V++  V SAC+ +    
Sbjct: 309 FGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYF 368

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +GQ Q   +    G    +     ++DLYG+   L +A  I   M     S  W  ++ A
Sbjct: 369 QGQ-QVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAA 426

Query: 591 CQ 592
            +
Sbjct: 427 LE 428



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 199/432 (46%), Gaps = 38/432 (8%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN L+S Y + G + E++ ++ +M  R +  D  T+  +LK+C  + ++  G  VH+ 
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 174

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    E  +   +ALV MYGK   +D A   F  M ER+ VSW   I+       +   
Sbjct: 175 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRG 234

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF+EMQ  G+ V                             +Q +Y  +        +
Sbjct: 235 LELFIEMQRLGLGV-----------------------------SQPSYASA------FRS 259

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +  L  G+++H  A++  +     V  A++ +Y++   L  A   F      ++ T 
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+ G        E+  LF+ M RS +  + V+++ +   CA       G++ HC  ++
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 379

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              F+  + + N+++++Y +   + EA  +F  M ++D V++ ++IA     G     + 
Sbjct: 380 SG-FDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 438

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            F EM +  +KPD  T  +VL AC+    +  G    +++    G+       + +VD+Y
Sbjct: 439 HFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMY 497

Query: 560 GRAGLLNKAKEI 571
            + G++++A+++
Sbjct: 498 CKCGIIDEAQKL 509


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 202/623 (32%), Positives = 321/623 (51%), Gaps = 71/623 (11%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY--------PL 141
           ++Q KQ+HA  +  GL  +P    K+V F          C L E+ +++Y        P 
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAF----------CSLQESGSLQYARLVFSQIPN 50

Query: 142 PWNLLISLYVR----DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           P +   +  +R       + EAL  Y++M  + +  D +T+PS+ K+C    +   G+ +
Sbjct: 51  PTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQI 107

Query: 198 HSCIDACHEWSL------FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
           H     CH   L      +  N L++MY   G +  AR++FDKM ++  VSW TMI  +A
Sbjct: 108 H-----CHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHA 162

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                 EA +LF  M                                  M+++    + V
Sbjct: 163 QWDQPNEAVRLFDRM----------------------------------MKSENVKPNEV 188

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
             V  L AC+    L + K IH       +G +  +   L+ +Y +C  ++ A  LF   
Sbjct: 189 TLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKA 248

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            EK++ +WN M++G+      EE+  LFREM   G++ + VT+AS+L  C  +  L+ GK
Sbjct: 249 QEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGK 308

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
             H YI ++   +  + L  +LV+MYA+ G +  A  VF  M  +D +T+T+LI G  + 
Sbjct: 309 WLHAYI-KKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMC 367

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G+   AL+ F+EM+   +KPD +T V VL+ACSH+G V EG   F  M+  YGI P +EH
Sbjct: 368 GQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEH 427

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +  +VD+ GRAG + +A+E+I  MP  P   +   LLGAC+IH N    E AA++LLE  
Sbjct: 428 YGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEID 487

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P +SG YVL++N+Y ++  W++  + R  M + G+RK PGC+ ++   V   F+  D+S+
Sbjct: 488 PYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSH 547

Query: 672 VQAQEIYPLLGGLTELMKDAGYV 694
            Q+ EI  +L  +   +K+AGYV
Sbjct: 548 RQSSEINEMLEDMISKLKNAGYV 570



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 111/215 (51%), Gaps = 1/215 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +  +++  C + + LA  K++H      G  ++ VL   L+  Y        A  L + +
Sbjct: 189 TLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKA 248

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +    WN++I+ +V D  Y EAL ++++MQ++ I+GD  T  S+L AC  +  ++ G+
Sbjct: 249 QEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGK 308

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+ I     +  + +  ALV MY K G ++ A ++F +M E+D ++W  +I   A  G
Sbjct: 309 WLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCG 368

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
             + A Q F EM  +GV+ + IT+  +   C   G
Sbjct: 369 QAENALQYFDEMHIKGVKPDAITFVGVLAACSHAG 403



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 4/186 (2%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           N  +A   F  ++      D V  + A ++  C  + AL  GK LHA      ++ +  L
Sbjct: 268 NYEEALLLFREMQTKGIKGDKV--TMASLLLACTHLGALELGKWLHAYIKKQRIDVDVAL 325

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
              LV  YA       A  +      +  + W  LI      G    AL  + +M  + +
Sbjct: 326 GTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGV 385

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVAR 229
           + D  T+  VL AC     VD G    + +   +  + ++  +  LV + G+ G++  A 
Sbjct: 386 KPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAE 445

Query: 230 RLFDKM 235
            L   M
Sbjct: 446 ELIKSM 451


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 214/674 (31%), Positives = 345/674 (51%), Gaps = 77/674 (11%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP- 142
           C   K L QGK +H    + G + N VL   L+ FY S   Y +A  + + ++   PL  
Sbjct: 13  CTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTNDC--PLDV 70

Query: 143 --WNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
             WN L+S Y  +  + EAL ++ Q+  +  +R D +TYP VLKACG +  V +GR +H+
Sbjct: 71  SLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHN 130

Query: 200 -CIDACHEWSLFVH-------------------------------NALVSMYGKFGQVDV 227
             +     W +FV                                NA++S Y K G+ ++
Sbjct: 131 HLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEM 190

Query: 228 ARRLFDKM----LERDAVSWNTMISA----------------YASKGLWKEAFQLF---- 263
           A + FDKM     E ++V++  ++S+                   + +  +AF L     
Sbjct: 191 ALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVD 250

Query: 264 -------VEMQEEGVEV----NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                  +EM +E  E     N ITWN +  G    G+ +  +ELL RM  + T    + 
Sbjct: 251 MYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMT 310

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               + A S    L+ GK IHG  +R        +  +LI  Y +C  +  A  +F+  +
Sbjct: 311 LTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTIS 370

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +  +++WN M+SG+  +    ++  ++  M    V+P+ +T +S L  C+++A L  G+E
Sbjct: 371 KNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRE 430

Query: 433 FH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
            H C I  +   NE  ++  +L++MYA+ G V EA+ +F  + +RD V++TS+I  YG  
Sbjct: 431 LHYCIINHKLEANE--IVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSH 488

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G+   AL+LF+EM K  ++ D VT +AVLSACSH+GLV EG   F  M   Y I P +EH
Sbjct: 489 GQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEH 548

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTS-AMWATLLGACQIHRNTGIGEWAAEKLLET 610
           ++C++DL GRAG L++A EI+ +   T +   + +TL  AC +H N  +G    + L+E 
Sbjct: 549 YSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEV 608

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P++   Y+L++NMYA+   WD++ KVR  M++LG++K PGC+W++      PF  +D S
Sbjct: 609 DPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIHPFFAEDKS 668

Query: 671 NVQAQEIYPLLGGL 684
           N  A  +Y  L  L
Sbjct: 669 NPLADGVYECLNIL 682



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 1/228 (0%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           +R+        L +   II+   +   L  GK +H   +   ++ +  +   L+ FY   
Sbjct: 297 MRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKC 356

Query: 123 SLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
              ++A  +    +    + WN++IS +V  G + +AL +Y  M+   ++ D  T+ S L
Sbjct: 357 GYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTL 416

Query: 183 KACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
            AC ++  +D GR +H C I+   E +  V  AL+ MY K G VD AR+LF ++ +RD V
Sbjct: 417 SACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLV 476

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           SW +MI AY S G   EA +LF EMQ+  V  + +T+  +   C   G
Sbjct: 477 SWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAG 524



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 182/429 (42%), Gaps = 41/429 (9%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G    A + F +++      + V  +F  ++  C ++  L +GK++H   I   +  +  
Sbjct: 186 GKAEMALKTFDKMKELGFEPNSV--TFTVVVSSCTRLLNLERGKEVHRELIERRILLDAF 243

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           ++  LV  Y        A  + E    +  + WN +I+ Y   G     + +  +M    
Sbjct: 244 VLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEG 303

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVAR 229
            +    T  S++ A    + +  G+ +H  I     +  +F+  +L+  Y K G V  A 
Sbjct: 304 TKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAE 363

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +F  + + + VSWN MIS +   G   +A  ++  M+E  V+ + +T+++         
Sbjct: 364 TIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSST-------- 415

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                                      L ACS + AL  G+E+H   +       E V  
Sbjct: 416 ---------------------------LSACSQLAALDKGRELHYCIINHKLEANEIVMG 448

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ MY++C D+  A  LF    ++ +++W SM+  Y     A E+  LF EM +  V  
Sbjct: 449 ALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRA 508

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + VT  ++L  C+    +  G  +   ++ +      +  ++ L+++  R+G++ EA   
Sbjct: 509 DSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEA--- 565

Query: 470 FDLMSRRDE 478
           ++++ R  E
Sbjct: 566 YEILQRSKE 574



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 106/226 (46%), Gaps = 6/226 (2%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           GN  +A   +  ++      D +  +F+  +  C ++ AL +G++LH C I   LE N +
Sbjct: 388 GNHIQALHIYDNMKEHHVKPDAL--TFSSTLSACSQLAALDKGRELHYCIINHKLEANEI 445

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           ++  L+  YA     + A  L      R  + W  +I  Y   G  +EAL ++ +MQ   
Sbjct: 446 VMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLN 505

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVA 228
           +R D+ T+ +VL AC     VD G +  + +   ++    +  ++ L+ + G+ G++  A
Sbjct: 506 VRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEA 565

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
             +  +   ++  S   ++S   S  L    F L +++ +  +EV+
Sbjct: 566 YEILQR--SKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVD 609



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 109/264 (41%), Gaps = 37/264 (14%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           +YVT+ S L  C     L+ GK  H  I     F  +++L  SL+  Y        A+ V
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCG-FQSNIVLSKSLIGFYFSCHDYASAELV 60

Query: 470 FDLMSRRDEVT-YTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSG 527
           F       +V+ + +L++ Y        AL+LF+++N N  ++PD  T   VL AC   G
Sbjct: 61  FQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 528 LVVEGQKQFERM------------TSIYGIFPQLEHFACMVDLY---------------- 559
            V+ G++    +            +S+  ++ + + F   + L+                
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVIS 180

Query: 560 -----GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
                G+A +  K  + + ++ + P S  +  ++ +C    N   G+    +L+E R   
Sbjct: 181 CYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILL 240

Query: 615 SGYYV-LIANMYAATGCWDKLAKV 637
             + +  + +MY   GC +   +V
Sbjct: 241 DAFVLSALVDMYGKCGCLEMAKEV 264


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 193/652 (29%), Positives = 340/652 (52%), Gaps = 38/652 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ F   G    A + + R+       D    ++  +I  CG +  LA+G+++H   I  
Sbjct: 98  IRGFVDNGLFWDAVDFYHRMEFGGVRGDNF--TYPFVIKACGGLYDLAEGERVHGKVIKS 155

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL+ +  +   L+  YA      +A  +     +R  + WN +IS YV  G    +L  +
Sbjct: 156 GLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCF 215

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKF 222
           ++MQ+  I+ D F+   +L AC     +  G+ +H   + +  E  + V  +LV MY K 
Sbjct: 216 REMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKC 275

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G++D A RLFD++ ++  V+WN MI  Y+      E+F    +MQE G            
Sbjct: 276 GRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGG------------ 323

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                 + + D +  +  L  C+ + A+ LGK +HG A+R  + 
Sbjct: 324 ----------------------KLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFL 361

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
            +  +  AL+ MY  C  L+ A  LF    E+++I+WN+M++ YT      ++  LF+++
Sbjct: 362 PHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDL 421

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
               ++P+  TIASILP  A +A+L+  ++ H Y+ +  + + +  + NS+V MY + G 
Sbjct: 422 CNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKL-DSNTFVSNSIVFMYGKCGN 480

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A+ +FD M+ +D +++ ++I  Y I G GR++++LF EM +   +P+  T V++L +
Sbjct: 481 LLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLS 540

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CS +GLV EG + F  M   Y I P +EH+ C++DL GR G L+ AK  I +MP  PT+ 
Sbjct: 541 CSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTAR 600

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W +LL A +   +  + E AAE +L    +N+G YVL++NMYA  G W+ + +++  M+
Sbjct: 601 IWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMK 660

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             G+ K  GC+ VD  +    F+  D S+ +   +Y +L  +++ + +  YV
Sbjct: 661 KEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYV 712



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 159/517 (30%), Positives = 264/517 (51%), Gaps = 55/517 (10%)

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           +E+N V + + ++ Y       NA  L EN        WN++I  +V +G + +A+  Y 
Sbjct: 56  VERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYH 115

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFG 223
           +M+   +RGDNFTYP V+KACG + D+  G  VH   I +  +  +++ N+L+ MY K G
Sbjct: 116 RMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIG 175

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            ++ A  +F +M  RD VSWN+MIS Y S G    +   F EMQ  G++           
Sbjct: 176 CIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIK----------- 224

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                   LD  + +  LGACS  G L+ GKEIH   +R     
Sbjct: 225 ------------------------LDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLEL 260

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V+ +L+ MY++C  + +A  LF    +KSI+ WN+M+ GY+    + ES    R+M 
Sbjct: 261 DVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQ 320

Query: 404 RSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             G + P+++T+ ++LP CA++  +  GK  H + +R   F  HL+L  +LV+MY   GK
Sbjct: 321 EGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNG-FLPHLVLETALVDMYGECGK 379

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A+ +F  M+ R+ +++ ++IA Y   GE R A+ LF+++    +KPD  T+ ++L A
Sbjct: 380 LKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPA 439

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEIITKMP 576
            +    + E ++       I+G   +L+  +       +V +YG+ G L +A+EI  +M 
Sbjct: 440 YAELASLREAEQ-------IHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMT 492

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           +    + W T++ A  IH   G G  + E   E R +
Sbjct: 493 FKDVIS-WNTVIMAYAIH---GFGRISIELFSEMREK 525



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 170/342 (49%), Gaps = 7/342 (2%)

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           ++ER++VS    +S+Y  +G  K A  LF  M+    + +   WN +  G +  G F   
Sbjct: 55  LVERNSVSLTRALSSYVERGYMKNALDLFENMR----QCDTFIWNVMIRGFVDNGLFWDA 110

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           ++   RM       D+      + AC  +  L  G+ +HG  ++        + N+LI M
Sbjct: 111 VDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIM 170

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y++   +  A ++F+    + +++WNSM+SGY  +     S   FREM  SG++ +  ++
Sbjct: 171 YAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSV 230

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
             IL  C+    L++GKE HC ++ R+     +++  SLV+MYA+ G++  A+ +FD ++
Sbjct: 231 IGILGACSLEGFLRNGKEIHCQMM-RSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQIT 289

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            +  V + ++I GY +  +   +     +M +  ++ PD +TM+ +L  C+    ++ G 
Sbjct: 290 DKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLG- 348

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           K         G  P L     +VD+YG  G L  A+ +  +M
Sbjct: 349 KSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQM 390


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 202/665 (30%), Positives = 351/665 (52%), Gaps = 41/665 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A      +AF  F  +       D V  S A ++    +  ++ + +Q+H+  I LG +
Sbjct: 173 YAQNNQFREAFGLFIEMGRHGIDPDHV--SLATLLSGFTEFDSVNEVRQVHSHVIKLGYD 230

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
              V+   L+  Y        A  L  +   R  + +N L++ Y ++GF  EA+ ++ +M
Sbjct: 231 STLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKM 290

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQV 225
           Q    R   FT+ ++L A  ++ D++FG+ VH  +  C+  W++FV NAL+  Y K  +V
Sbjct: 291 QEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRV 350

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A +LF +M E D +S+N +++ YA  G  KE+ +LF E+Q  G +             
Sbjct: 351 VEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRR----------- 399

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
               NF                    AT++ + A S    L +G++IH   +        
Sbjct: 400 ----NF------------------PFATLLSIAAISL--NLDIGRQIHSQTIVTDAISEI 435

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V N+L+ MY++C +   A  +F   A +S + W +M+S Y      E+   LF EM R+
Sbjct: 436 LVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRA 495

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            +  +  T ASI+  CA +A+L  GK+ H +I+    +  ++   ++LV+MYA+ G + +
Sbjct: 496 KIGADAATYASIVRACASLASLTLGKQLHSHIIGSG-YISNVFSGSALVDMYAKCGSIKD 554

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A  +F  M  R+ V++ +LI+ Y   G+G   L+LFEEM ++ ++PD V+++++L ACSH
Sbjct: 555 ALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSH 614

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
            GLV EG + F+ MT IY + P+ EH+A  +D+  R G  ++A++++ +MP+ P   MW+
Sbjct: 615 CGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWS 674

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRP-ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
           ++L +C IH+N  + + AA +L   +   ++  YV ++N+YAA G WD + KV+  MR+ 
Sbjct: 675 SVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRER 734

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
           GV+K+P  +WV+  +    F  +D ++ Q +EI   L  L E M   GY   +  C+   
Sbjct: 735 GVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGY-KPDSSCALHN 793

Query: 705 IVEEI 709
           + EE+
Sbjct: 794 VDEEV 798



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 213/454 (46%), Gaps = 39/454 (8%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W +LI  Y ++  + EA  ++ +M    I  D+ +  ++L    E   V+  R V
Sbjct: 161 RTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQV 220

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           HS  I   ++ +L V N+L+  Y K   + +A +LF+ + ERD+V++N +++ Y+ +G  
Sbjct: 221 HSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFN 280

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           +EA  LF +MQE G      T+  I                                   
Sbjct: 281 REAINLFFKMQEVGYRPTEFTFAAI----------------------------------- 305

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L A   +  ++ G+++HG  V+  +     V NAL+  YS+   +  A  LF    E   
Sbjct: 306 LTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDG 365

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           I++N +++ Y      +ES  LF+E+  +G +      A++L + A   NL  G++ H  
Sbjct: 366 ISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQ 425

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            +     +E +L+ NSLV+MYA+ G+  EA  +F  ++ +  V +T++I+ Y  +G    
Sbjct: 426 TIVTDAISE-ILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHED 484

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
            LKLF EM + +I  D  T  +++ AC+    +  G KQ        G    +   + +V
Sbjct: 485 GLKLFVEMQRAKIGADAATYASIVRACASLASLTLG-KQLHSHIIGSGYISNVFSGSALV 543

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           D+Y + G +  A ++  +MP    S  W  L+ A
Sbjct: 544 DMYAKCGSIKDALQMFQEMP-VRNSVSWNALISA 576



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 178/383 (46%), Gaps = 38/383 (9%)

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           ++F  N ++  Y K G +  AR LFD M +R AV+W  +I  YA    ++EAF LF+EM 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
             G++ + ++  T+  G                     T  DSV  V             
Sbjct: 191 RHGIDPDHVSLATLLSGF--------------------TEFDSVNEV------------- 217

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
             +++H   ++  Y     V N+L+  Y + + L  A+ LF    E+  +T+N++L+GY+
Sbjct: 218 --RQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYS 275

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                 E+  LF +M   G  P   T A+IL    ++ +++ G++ H +++ +  F  ++
Sbjct: 276 KEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV-KCNFVWNV 334

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N+L++ Y++  +V EA  +F  M   D ++Y  L+  Y   G  + +L+LF+E+   
Sbjct: 335 FVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFT 394

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
                +     +LS  + S L ++  +Q    T +     ++     +VD+Y + G   +
Sbjct: 395 GFDRRNFPFATLLSIAAIS-LNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGE 453

Query: 568 AKEIITKMPYTPTSAMWATLLGA 590
           A  I + +    +S  W  ++ +
Sbjct: 454 ANRIFSDLA-IQSSVPWTAMISS 475


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 205/603 (33%), Positives = 316/603 (52%), Gaps = 71/603 (11%)

Query: 94   KQLHA-CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
            K+LH+   I   L  NP L  KL+  YA      +   + +    +  + +N++I  YV 
Sbjct: 1044 KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 1103

Query: 153  DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFV 211
            +  Y++AL V+K M    I  D++TYP VLKA     D+  G  +H+ +     + ++FV
Sbjct: 1104 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFV 1163

Query: 212  HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
             N L+SMYGK G +  A R+ D+M  RD                                
Sbjct: 1164 GNGLISMYGKCGCLVEACRVLDZMPCRD-------------------------------- 1191

Query: 272  EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
               V++WN++  GC R G F   LE+   M            ++GL   +   A  L   
Sbjct: 1192 ---VVSWNSLVAGCARNGQFDDALEVCKEME-----------LLGLKPDAGTMASLLPA- 1236

Query: 332  IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
                           V N  +   S  K++      F   A KS+++WN M++ Y +   
Sbjct: 1237 ---------------VTNTCLDNVSFVKEM------FMKLANKSLVSWNVMIAVYMNNSM 1275

Query: 392  AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
              E+  +F +M    V+P+ ++IAS+LP C  ++ L  G+  H Y++R+ +   +LLL N
Sbjct: 1276 PAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRL-QPNLLLEN 1334

Query: 452  SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            +L++MYA+ G +  A+ VFD M  RD V++TS+I+ YG+ G+GR A+ LF  M    + P
Sbjct: 1335 ALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNP 1394

Query: 512  DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
            D +  V+VLSACSH+GL+ EG+  F+ MT    I P++EHF CMVDL GRAG +++A   
Sbjct: 1395 DSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGF 1454

Query: 572  ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
            I +MP  P   +W  LL AC+++ N  IG  AA++L +  PE SGYYVL++N+YA  G W
Sbjct: 1455 IKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRW 1514

Query: 632  DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
            + +  VR+ M+  G++K+PG +  +  N    FL  D S+ Q+++IY  L  L   MK+A
Sbjct: 1515 EDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEA 1574

Query: 692  GYV 694
            GYV
Sbjct: 1575 GYV 1577



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 164/380 (43%), Gaps = 79/380 (20%)

Query: 93   GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
            G Q+HA  + +GL+ N  +   L++ Y        AC +++    R  + WN L++   R
Sbjct: 1145 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCAR 1204

Query: 153  DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVH 212
            +G + +AL V K+M+   ++ D  T  S+L A           V ++C+D          
Sbjct: 1205 NGQFDDALEVCKEMELLGLKPDAGTMASLLPA-----------VTNTCLD---------- 1243

Query: 213  NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
                        V   + +F K+  +  VSWN MI+ Y +  +  EA  +F++M++  V+
Sbjct: 1244 -----------NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVD 1292

Query: 273  VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
             + I                                 S+A+V  L AC  + AL LG+ I
Sbjct: 1293 PDAI---------------------------------SIASV--LPACGDLSALLLGRRI 1317

Query: 333  HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
            H   VR        + NALI MY++C  L +A  +F     + +++W SM+S Y      
Sbjct: 1318 HEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKG 1377

Query: 393  EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF------HCYILRRAMFNEH 446
             ++  LF  M   G+ P+ +   S+L  C+    L  G+ +       C I+ R    EH
Sbjct: 1378 RDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRI---EH 1434

Query: 447  LLLWNSLVEMYARSGKVPEA 466
             +    +V++  R+G+V EA
Sbjct: 1435 FVC---MVDLLGRAGQVDEA 1451



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 5/199 (2%)

Query: 54   SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
            ++A + F ++   A   D +  S A ++  CG + AL  G+++H   +   L+ N +L  
Sbjct: 1277 AEAVDIFLQMEDHAVDPDAI--SIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLEN 1334

Query: 114  KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
             L+  YA       A  + +    R  + W  +IS Y  +G   +A+ ++ +MQ   +  
Sbjct: 1335 ALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNP 1394

Query: 174  DNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNA-LVSMYGKFGQVDVARRL 231
            D+  + SVL AC     +D GR     + + C       H   +V + G+ GQVD A   
Sbjct: 1395 DSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGF 1454

Query: 232  FDKM-LERDAVSWNTMISA 249
              +M +E +   W  ++SA
Sbjct: 1455 IKQMPMEPNERVWGALLSA 1473


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 208/653 (31%), Positives = 335/653 (51%), Gaps = 40/653 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L+  A R +L  A  AF  + +++A    VL +F  ++  C     LA G+ +HA   A 
Sbjct: 31  LRASAARSDLPAALAAF--VAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR 88

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G++   +    L   YA      +A  + +   +R  + WN L++ Y R+G    A+ + 
Sbjct: 89  GIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMV 148

Query: 164 KQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
            +MQ     R D+ T  SVL AC     +   R  H+  I +  E  + V  A++  Y K
Sbjct: 149 VRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCK 208

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  AR +FD M  +++VS                                   WN +
Sbjct: 209 CGDIRAARVVFDWMPTKNSVS-----------------------------------WNAM 233

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
             G  + G+ +  L L +RM  +   +  V+ +  L AC  +G L  G  +H   VR   
Sbjct: 234 IDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGL 293

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               +V NALITMYS+CK +  A  +F     ++ ++WN+M+ G     C+E++  LF  
Sbjct: 294 DSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTR 353

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M    V+P+  T+ S++P  A +++    +  H Y +R  + ++ + +  +L++MYA+ G
Sbjct: 354 MQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHL-DQDVYVLTALIDMYAKCG 412

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           +V  A+ +F+    R  +T+ ++I GYG  G G+ A++LFEEM    I P+  T ++VLS
Sbjct: 413 RVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLS 472

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSH+GLV EG++ F  M   YG+ P +EH+  MVDL GRAG L++A   I KMP  P  
Sbjct: 473 ACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGL 532

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           +++  +LGAC++H+N  + E +A+K+ E  P+   Y+VL+AN+YA    W  +A+VRT M
Sbjct: 533 SVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAM 592

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
              G++K PG + +   N    F    T++ QA+EIY  L  L E +K  GYV
Sbjct: 593 EKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYV 645


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 197/621 (31%), Positives = 313/621 (50%), Gaps = 54/621 (8%)

Query: 79  HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIR 138
           H I      K +A  +++ A  I  G + N  + P +VT +       +A  L ++    
Sbjct: 69  HFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDH---- 124

Query: 139 YPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           +P P    WN +   Y  + FY E + ++ +M+S  +R + FT+P VLK+C ++     G
Sbjct: 125 FPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG 184

Query: 195 RVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             +H   I    E + FV   L+ +Y     +  A +LF  MLER+ V+W +MIS Y   
Sbjct: 185 EEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILC 244

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                A +LF    +   E +V+ WN +  G +  G+ K   +L   M     Y D+++ 
Sbjct: 245 NRVALARRLF----DLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTM----PYRDTMSW 296

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                                              N ++  Y+   D+     LF+   E
Sbjct: 297 -----------------------------------NTMLNGYANNGDVEACEQLFEEMPE 321

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKE 432
           +++ +WN ++ GY H  C  E    F+ M   G V PN  T+ ++L  CAR+  L  GK 
Sbjct: 322 RNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKW 381

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H Y      F   + + N+L++MY++ G +  A  VF+ M  +D +T+ S+I G    G
Sbjct: 382 VHVYAATIG-FKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHG 440

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G  AL LF +M  N  KPD +T + VL +C+H GLV EG   F  M + Y I PQ+EH+
Sbjct: 441 CGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHY 500

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CMVDL+GRAGLL++A E + +MP    + +WA LLGAC+I++N  + E A +KL+   P
Sbjct: 501 GCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEP 560

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           +N   YVL++N+Y   G W  +A+++  MRD G +K+PGC+ ++  +    F   D  + 
Sbjct: 561 KNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHS 620

Query: 673 QAQEIYPLLGGLTELMKDAGY 693
           Q++EIY +L GL +L++  GY
Sbjct: 621 QSKEIYGVLKGLMKLLRSFGY 641


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 222/658 (33%), Positives = 341/658 (51%), Gaps = 50/658 (7%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYAS 121
           I ++  S+ ++L SF    +   +   L +G+++H   I  GL    V +   LV  YA 
Sbjct: 304 IDVSPESYVILLSSFPE--YSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAK 361

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
                +A  +      +  + WN +I+   ++G + EA+  YK M+   I   +FT  S 
Sbjct: 362 CGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISS 421

Query: 182 LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           L +C  +     G+ +H   +    + ++ V NAL+++Y + G ++  R++F  M E D 
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQ 481

Query: 241 VSWNTMISAYA-SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
           VSWN++I A A S+    EA   F+  Q  G ++N IT++++                  
Sbjct: 482 VSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVL----------------- 524

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
                     S  + +  G        +LGK+IHG A++    +     NALI  Y +C 
Sbjct: 525 ----------SAVSSLSFG--------ELGKQIHGLALKNNIADEATTENALIACYGKCG 566

Query: 360 DLRHAYILFKMTAE-KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
           ++     +F   AE +  +TWNSM+SGY H +   ++  L   M ++G   +    A++L
Sbjct: 567 EMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVL 626

Query: 419 PLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
              A VA L+ G E H C +  RA     +++ ++LV+MY++ G++  A   F+ M  R+
Sbjct: 627 SAFASVATLERGMEVHACSV--RACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRN 684

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMN-KNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
             ++ S+I+GY   G+G  ALKLFE M    Q  PDHVT V VLSACSH+GL+ EG K F
Sbjct: 685 SYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHF 744

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC--QIH 594
           E M+  YG+ P++EHF+CM D+ GRAG L+K ++ I KMP  P   +W T+LGAC     
Sbjct: 745 ESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANG 804

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           R   +G+ AAE L +  PEN+  YVL+ NMYAA G W+ L K R  M+D  V+K  G +W
Sbjct: 805 RKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSW 864

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
           V   +    F+  D S+  A  IY  L  L   M+DAGYV +  F     E+E  EEI
Sbjct: 865 VTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEI 922



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 216/500 (43%), Gaps = 55/500 (11%)

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           L+K+  L   L+  Y       +A  + +   +R  + W  ++S Y R+G + EAL   +
Sbjct: 32  LDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLR 91

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVD--FGRVVHSCI-DACHEWSLFVHNALVSMYGK 221
            M    I  + + + SVL+AC E+  V   FGR +H  +    +     V N L+SMY K
Sbjct: 92  DMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWK 151

Query: 222 -FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
             G V  A   F  +  +++VS                                   WN+
Sbjct: 152 CIGSVGYALCAFGDIEVKNSVS-----------------------------------WNS 176

Query: 281 IAGGCLRTGNFKGVLELLSRM-----RTQETYLDSVATVIGLGACSHVGA-LKLGKEIHG 334
           I     + G+ +    + S M     R  E    S+ T     ACS     ++L ++I  
Sbjct: 177 IISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTT----ACSLTEPDVRLLEQIMC 232

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
           +  +        V + L++ +++   L +A  +F     ++ +T N ++ G       EE
Sbjct: 233 TIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEE 292

Query: 395 SAFLFREMFRS-GVEP-NYVTIASILP--LCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
           +  LF +M     V P +YV + S  P    A    L+ G+E H +++   + +  + + 
Sbjct: 293 ATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIG 352

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N LV MYA+ G + +A+ VF  M+ +D V++ S+I G    G    A++ ++ M ++ I 
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL 412

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           P   T+++ LS+C+       GQ Q    +   GI   +     ++ LY   G LN+ ++
Sbjct: 413 PGSFTLISSLSSCASLKWAKLGQ-QIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRK 471

Query: 571 IITKMPYTPTSAMWATLLGA 590
           I + MP       W +++GA
Sbjct: 472 IFSSMP-EHDQVSWNSIIGA 490



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 188/420 (44%), Gaps = 23/420 (5%)

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           RL+   L++D    N +I+AY   G    A ++F EM       N ++W  I  G  R G
Sbjct: 26  RLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLR----NCVSWACIVSGYSRNG 81

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL--GKEIHGSAVRGCYGEYENV 347
             K  L  L  M  +  + +  A V  L AC  +G++ +  G++IHG   +  Y     V
Sbjct: 82  EHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVV 141

Query: 348 RNALITMYSRC-KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
            N LI+MY +C   + +A   F     K+ ++WNS++S Y+       +  +F  M   G
Sbjct: 142 SNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDG 201

Query: 407 VEPNYVTIASILPLCARVA--NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
             P   T  S++     +   +++  ++  C I +  +  + L + + LV  +A+SG + 
Sbjct: 202 SRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTD-LFVGSGLVSAFAKSGSLS 260

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A+ VF+ M  R+ VT   L+ G   Q  G  A KLF +MN + I     + V +LS+  
Sbjct: 261 YARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN-SMIDVSPESYVILLSSFP 319

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFAC-----MVDLYGRAGLLNKAKEIITKMPYTP 579
              L  E   +  R    + I   L  F       +V++Y + G +  A+ +   M    
Sbjct: 320 EYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT-DK 378

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN--SGYYVLIANMYA-ATGCWDKLAK 636
            S  W +++    + +N    E A E+    R  +   G + LI+++ + A+  W KL +
Sbjct: 379 DSVSWNSMITG--LDQNGCFIE-AVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQ 435



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
           FH  + +  + ++ + L N+L+  Y  +G    A+ VFD M  R+ V++  +++GY   G
Sbjct: 23  FHSRLYKNRL-DKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNG 81

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           E + AL    +M K  I  +    V+VL AC   G V
Sbjct: 82  EHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 311/566 (54%), Gaps = 44/566 (7%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLF 232
           D    P+  K+C  +      R +H+  +        FV ++L+  Y + G    AR LF
Sbjct: 19  DPHLLPTAFKSCPTL---PLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALF 75

Query: 233 DKML--ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG-VEVNVITWNTIAGGCLRTG 289
           D M   +R  V W+ +++A+A++G  + A++L  EM+ +G VE NVITWN +  G  R+G
Sbjct: 76  DGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSG 135

Query: 290 NFKGVLELLSRMRTQETYL-DSVATVIGLGACSHVGALKLGKEIHGSAVR-GC------- 340
             +  +  L+ M  +     D+      L A   VG + +G+++HG AV+ GC       
Sbjct: 136 RARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVV 195

Query: 341 ------YGE----YENVR-------------NALITMYSRCKDLRHAYILFKMTAEK--- 374
                 YG+     E VR             NALI   SR   +  A  LFK   ++   
Sbjct: 196 TALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVE 255

Query: 375 -SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
            ++++W S+++         E+   FREM   G EPN VTI  +LP  A VA L HG+  
Sbjct: 256 LNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSA 315

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           HC+ LR+   ++ + + ++LV+MYA+ G+V +A+ +FD M  R+ V++ ++I GY + GE
Sbjct: 316 HCFALRKGFLHD-VYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGE 374

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A+ +F  M K + KPD VT   +L+AC+ +GL  EG+  F+ M + YG+ P++EH+A
Sbjct: 375 AVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYA 434

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMV L GRAG L++A ++I+ MP+ P + +W +LLG+C++H N  + E AAEKL    PE
Sbjct: 435 CMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPE 494

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N+G YVL++N+YA+   WD++ +VR  M+D+G++K  GC+W++  N     L  D S+  
Sbjct: 495 NAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPM 554

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEEF 699
              I   +  L   M+  G+V   +F
Sbjct: 555 MTAIIEKINQLNIQMRKLGFVPSTDF 580



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 1/150 (0%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + W  +++  V++G   EA+  +++MQ++    ++ T P VL A   +  +  GR  H  
Sbjct: 259 VSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCF 318

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +       ++V +ALV MY K G+V  AR +FD M+ R+ VSWN MI  YA  G    A
Sbjct: 319 ALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNA 378

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
             +F  M +   + +++T+  +   C + G
Sbjct: 379 VWMFHSMLKCKQKPDMVTFTCLLAACTQAG 408



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           VL +FA+       V AL  G+  H  A+  G   +  +   LV  YA      +A  + 
Sbjct: 299 VLPAFAN-------VAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIF 351

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +    R  + WN +I  Y   G    A+ ++  M   + + D  T+  +L AC +    +
Sbjct: 352 DTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTE 411

Query: 193 FGRVVHSCIDACHEWSL---FVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMI 247
            GR  H   +  +E+ +     H A +V++ G+ G++D A  L   M  E DA  W +++
Sbjct: 412 EGR--HYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLL 469

Query: 248 SA 249
            +
Sbjct: 470 GS 471


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 209/631 (33%), Positives = 321/631 (50%), Gaps = 58/631 (9%)

Query: 86   KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS--LYNNACF------------- 130
            K+    +G   +AC     L ++P +   +V FY  F    YN+  F             
Sbjct: 1914 KLDKDEKGSYPYAC-----LSESPSIYVCVVNFYECFDGITYNSILFGVPSGREDHSNLA 1968

Query: 131  -----LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
                  V+ SN+     WN +I+   R G   EAL  +  ++   +     ++P  +K+C
Sbjct: 1969 TWFYKYVDKSNVH---SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 2025

Query: 186  GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
              + D+  GR+ H        E  LFV +AL+ MY K GQ+  AR LFD++  R+ VSW 
Sbjct: 2026 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 2085

Query: 245  TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            +MI+ Y        A  LF +  EE  EV               GN              
Sbjct: 2086 SMITGYVQNEQADNALLLFKDFLEEETEV-------------EDGN-------------- 2118

Query: 305  ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
               LDSV  V  L ACS V    + + +HG  V+  +     V N L+  Y++C     +
Sbjct: 2119 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 2178

Query: 365  YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCAR 423
              +F    EK  I+WNSM++ Y     + E+  +F  M R  GV  N VT++++L  CA 
Sbjct: 2179 KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAH 2238

Query: 424  VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
               L+ GK  H  +++  +   ++ +  S+++MY + G+V  AK  FD M  ++  ++T+
Sbjct: 2239 AGALRAGKCIHDQVIKMDL-EYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTA 2297

Query: 484  LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
            ++AGYG+ G  + AL +F +M +  +KP+++T V+VL+ACSH+GLV EG   F  M   Y
Sbjct: 2298 MVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKY 2357

Query: 544  GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
             I P +EH+ CMVDL+GRAG LN+A  +I +M   P   +W +LLGAC+IH+N  +GE A
Sbjct: 2358 DIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIA 2417

Query: 604  AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
            A+KL E  P+N GYYVL++N+YA  G W  + ++R  M++  + K PG + V+       
Sbjct: 2418 AQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHV 2477

Query: 664  FLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            FLV D  +   + IY  L  LT  ++  GYV
Sbjct: 2478 FLVGDKEHPHHEMIYKYLEKLTLELQKIGYV 2508



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 194/390 (49%), Gaps = 11/390 (2%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP 140
           +F     K     +Q+HA  I  GL  + +L  KL+  Y++      A  L         
Sbjct: 31  LFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCT 90

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-S 199
             WNL+I     +G   +AL +YK M  + I  D FT+P V+KAC   + +D G+VVH S
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            I       +FV N L+  Y K G    A ++F+KM  R+ VSW T+IS   S G  +EA
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++F E+  +    NV++W  +  G +R    +  LEL  RM+ +  + +    V  + A
Sbjct: 211 RRIFDEIPSK----NVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +G L LG+ IH  A++ C      +  ALI MYS+C  ++ A  +F+    KS+ TW
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTW 326

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           NSM++        +E+  LF EM R  V+P+ +T   +L  C  + N++ G  +   + +
Sbjct: 327 NSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ 386

Query: 440 R---AMFNEHLLLWNSLVEMYARSGKVPEA 466
               A   EH   +  + E+YARS  + EA
Sbjct: 387 HYGIAPIPEH---YECMTELYARSNNLDEA 413



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 168/364 (46%), Gaps = 36/364 (9%)

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           L  D +    +I  Y++ G    A  LF ++Q         TWN I       G  +  L
Sbjct: 55  LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCT----FTWNLIIRANTINGLSEQAL 110

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            L   M  Q    D       + AC++  ++ LGK +HGS ++  +     V+N LI  Y
Sbjct: 111 MLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFY 170

Query: 356 SRCK-------------------------------DLRHAYILFKMTAEKSIITWNSMLS 384
            +C                                DL+ A  +F     K++++W +M++
Sbjct: 171 FKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMIN 230

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY      EE+  LF+ M    + PN  T+ S++  C  +  L  G+  H Y ++  +  
Sbjct: 231 GYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCI-E 289

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             + L  +L++MY++ G + +A  VF+ M R+   T+ S+I   G+ G G+ AL LF EM
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM 349

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            +  +KPD +T + VL AC H   V EG   F RMT  YGI P  EH+ CM +LY R+  
Sbjct: 350 ERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNN 409

Query: 565 LNKA 568
           L++A
Sbjct: 410 LDEA 413



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 215/493 (43%), Gaps = 58/493 (11%)

Query: 44   LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
            + D A  G+  +A  AF+ +R           SF   I  C  +  L  G+  H  A   
Sbjct: 1987 IADLARGGDSVEALRAFSSLRKLGLI--PTRSSFPCTIKSCSALCDLVSGRMSHQQAFVF 2044

Query: 104  GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            G E +  +   L+  Y+      +A  L +   +R  + W  +I+ YV++     AL ++
Sbjct: 2045 GFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLF 2104

Query: 164  KQM--------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNA 214
            K              +  D+    SVL AC  +        VH   +    + S+ V N 
Sbjct: 2105 KDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNT 2164

Query: 215  LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM-QEEGVEV 273
            L+  Y K GQ  V++++FD M E+D +SWN+MI+ YA  GL  EA ++F  M +  GV  
Sbjct: 2165 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 2224

Query: 274  NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
            N +T + +                                   L AC+H GAL+ GK IH
Sbjct: 2225 NAVTLSAV-----------------------------------LLACAHAGALRAGKCIH 2249

Query: 334  GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
               ++        V  ++I MY +C  +  A   F    EK++ +W +M++GY     A+
Sbjct: 2250 DQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAK 2309

Query: 394  ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
            E+  +F +M R+GV+PNY+T  S+L  C+    ++ G  +   +  +      +  +  +
Sbjct: 2310 EALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCM 2369

Query: 454  VEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGE---GRVAL-KLFEEMNKNQ 508
            V+++ R+G + EA ++   M  + D V + SL+    I      G +A  KLFE      
Sbjct: 2370 VDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFE------ 2423

Query: 509  IKPDHVTMVAVLS 521
            + PD+     +LS
Sbjct: 2424 LDPDNCGYYVLLS 2436



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 135/311 (43%), Gaps = 49/311 (15%)

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           ++IH   +R      + +   LI +YS    + +A +LF         TWN ++   T  
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
             +E++  L++ M   G+  +  T   ++  C    ++  GK  H  +++   F+  + +
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG-FSGDVFV 162

Query: 450 WNSLVEMYAR-------------------------------SGKVPEAKSVFDLMSRRDE 478
            N+L++ Y +                                G + EA+ +FD +  ++ 
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           V++T++I GY    +   AL+LF+ M    I P+  TMV+++ AC+  G++  G     R
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG-----R 277

Query: 539 MTSIYGIFPQLE----HFACMVDLYGRAGLLNKAKEIITKMPYT--PTSAMWATLLGACQ 592
               Y I   +E        ++D+Y + G +  A E+   MP    PT   W +++ +  
Sbjct: 278 GIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT---WNSMITSLG 334

Query: 593 IHRNTGIGEWA 603
           +H   G+G+ A
Sbjct: 335 VH---GLGQEA 342



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C ++  L  G+ +H  AI   +E    L   L+  Y+      +A  + E +
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFE-T 317

Query: 136 NIRYPLP-WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             R  LP WN +I+     G   EAL ++ +M+   ++ D  T+  VL AC  + +V  G
Sbjct: 318 MPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  332 bits (852), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 327/622 (52%), Gaps = 43/622 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---SFSLYNNACFLV 132
           S+A     C  +  L  G+QLHA AI      + V+   +V  YA   S +    A F +
Sbjct: 294 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGL 353

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
            N  +      N ++   VR G   EA+ +++ M    IR D  +   V  AC E     
Sbjct: 354 PNHTVETS---NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYF 410

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G+ VH   I +  +  + V+NA++ +YGK   +  A  +F  M ++D+VSWN +I+A  
Sbjct: 411 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALE 470

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G + +    F EM   G++ +  T+ ++                              
Sbjct: 471 QNGHYDDTILHFNEMLRFGMKPDDFTYGSV------------------------------ 500

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                L AC+ + +L+ G  +H   ++   G    V + ++ MY +C  +  A  L    
Sbjct: 501 -----LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 555

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             + +++WN++LSG++    +EE+   F EM   G++P++ T A++L  CA +A ++ GK
Sbjct: 556 GGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGK 615

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  I+++ M ++  +  ++LV+MYA+ G +P++  VF+ + +RD V++ ++I GY + 
Sbjct: 616 QIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALH 674

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G  AL++FE M K  + P+H T VAVL ACSH GL  +G + F  MT+ Y + PQLEH
Sbjct: 675 GLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEH 734

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           FACMVD+ GR+    +A + I  MP+   + +W TLL  C+I ++  I E AA  +L   
Sbjct: 735 FACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLD 794

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P++S  Y+L++N+YA +G W  +++ R  ++   ++K PGC+W++  +    FLV D ++
Sbjct: 795 PDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAH 854

Query: 672 VQAQEIYPLLGGLTELMKDAGY 693
            ++ E+Y +L  L   MK +GY
Sbjct: 855 PRSGELYEMLNDLIGEMKLSGY 876



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/524 (23%), Positives = 233/524 (44%), Gaps = 52/524 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +  RG   ++ + F  +     S D    +FA ++  C  ++ L+ G Q+HA A+  GLE
Sbjct: 166 YCQRGMFQESVDLFVEMARRGVSPDRT--TFAVLLKSCSALEELSLGVQVHALAVKTGLE 223

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +      LV  Y      ++A         R  + W   I+  V++  Y   L ++ +M
Sbjct: 224 IDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 283

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q   +     +Y S  ++C  M  ++ GR +H+  I         V  A+V +Y K   +
Sbjct: 284 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 343

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             ARR F  +      + N M+      GL  EA  LF  M    +  +V++ + +   C
Sbjct: 344 TDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 403

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
             T   KG  +                                G+++H  A++  +    
Sbjct: 404 AET---KGYFQ--------------------------------GQQVHCLAIKSGFDVDI 428

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NA++ +Y +CK L  AY++F+   +K  ++WN++++        +++   F EM R 
Sbjct: 429 CVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 488

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G++P+  T  S+L  CA + +L++G   H  +++  + ++  +  +++V+MY + G + E
Sbjct: 489 GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVA-STVVDMYCKCGIIDE 547

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ + D +  +  V++ ++++G+ +  E   A K F EM    +KPDH T   VL  C++
Sbjct: 548 AQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 607

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHF------ACMVDLYGRAG 563
              +  G++       I+G   + E        + +VD+Y + G
Sbjct: 608 LATIELGKQ-------IHGQIIKQEMLDDEYISSTLVDMYAKCG 644



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 197/422 (46%), Gaps = 29/422 (6%)

Query: 191 VDFGRVVHSCIDACHEW------------------SLFVHNALVSMYGKFGQVDVARRLF 232
           V F RV  SC  A  E                   + FV N L+ MY +      ARR+F
Sbjct: 58  VTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACARRVF 117

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D M  RD VSWNTM++AY+  G    A  LF  M +     +V++WN +  G  + G F+
Sbjct: 118 DAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP----DVVSWNALVSGYCQRGMFQ 173

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NA 350
             ++L   M  +    D     + L +CS +  L LG ++H  AV+   G   +VR  +A
Sbjct: 174 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVK--TGLEIDVRTGSA 231

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           L+ MY +C+ L  A   F    E++ ++W + ++G    +       LF EM R G+  +
Sbjct: 232 LVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVS 291

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             + AS    CA ++ L  G++ H + ++   F+   ++  ++V++YA++  + +A+  F
Sbjct: 292 QPSYASAFRSCAAMSCLNTGRQLHAHAIKNK-FSSDRVVGTAIVDVYAKANSLTDARRAF 350

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
             +      T  +++ G    G G  A+ LF+ M ++ I+ D V++  V SAC+ +    
Sbjct: 351 FGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYF 410

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +GQ Q   +    G    +     ++DLYG+   L +A  I   M     S  W  ++ A
Sbjct: 411 QGQ-QVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAA 468

Query: 591 CQ 592
            +
Sbjct: 469 LE 470



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 199/432 (46%), Gaps = 38/432 (8%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN L+S Y + G + E++ ++ +M  R +  D  T+  +LK+C  + ++  G  VH+ 
Sbjct: 157 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 216

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    E  +   +ALV MYGK   +D A   F  M ER+ VSW   I+       +   
Sbjct: 217 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRG 276

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF+EMQ  G+ V                             +Q +Y  +        +
Sbjct: 277 LELFIEMQRLGLGV-----------------------------SQPSYASA------FRS 301

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +  L  G+++H  A++  +     V  A++ +Y++   L  A   F      ++ T 
Sbjct: 302 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 361

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+ G        E+  LF+ M RS +  + V+++ +   CA       G++ HC  ++
Sbjct: 362 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 421

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              F+  + + N+++++Y +   + EA  +F  M ++D V++ ++IA     G     + 
Sbjct: 422 SG-FDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 480

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            F EM +  +KPD  T  +VL AC+    +  G    +++    G+       + +VD+Y
Sbjct: 481 HFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMY 539

Query: 560 GRAGLLNKAKEI 571
            + G++++A+++
Sbjct: 540 CKCGIIDEAQKL 551


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 323/601 (53%), Gaps = 40/601 (6%)

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE 206
           I ++ +   +   + V+  M ++ I  D+   P+V+K C  +  +  G+ +H C      
Sbjct: 46  IQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMH-CFALVSG 104

Query: 207 WSL--FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
             L   V ++L+ MY +F  +  AR +FDK+ +   V+ + +IS +A KG  KE  +LF 
Sbjct: 105 LGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFY 164

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           + ++ GVE+N+++WN +  G  R+G++   + +   M  +    D  +    L A   + 
Sbjct: 165 QTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLD 224

Query: 325 ALKLGKEIH---------------------------GSAVRGCYGEYENVR----NALIT 353
              +G +IH                            S + G + E + V     NAL+T
Sbjct: 225 MPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVT 284

Query: 354 MYSRCKDLRHAYILFKM--TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
             SR   + +A  +FK     + ++++W SM++  +      E+  LFREM   GV+PN 
Sbjct: 285 GLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNS 344

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           VTI  +LP C  +A L HGK  HC+ LR  +FN+ + + ++L++MYA+ G++  ++  FD
Sbjct: 345 VTIPCLLPACGNIAALLHGKAAHCFSLRNGIFND-VYVGSALIDMYAKCGRMLASRLCFD 403

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
           +M  R+ V++ SL+AGY + G+   A+ +FE M +   KPDHV+   VLSAC+  GL  E
Sbjct: 404 MMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEE 463

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G   F+ M+  +G+  ++EH++CMV L GR+G L +A  +I +MP+ P S +W  LL +C
Sbjct: 464 GWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSC 523

Query: 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
           ++H    +GE AA+++ E  P N G Y+L++N+YA+   W ++  VR  MR  G++K PG
Sbjct: 524 RVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPG 583

Query: 652 CAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEE 708
            +W++  N     L  D+S+ Q  +I   L  LT  MK +GYV   +F     EE+  E+
Sbjct: 584 YSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQ 643

Query: 709 I 709
           I
Sbjct: 644 I 644



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 127/523 (24%), Positives = 231/523 (44%), Gaps = 59/523 (11%)

Query: 34  HIMR--INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKA 89
           HI++  I+L ET++ F+   +       F+ +     +  +V DS     +I  C  + A
Sbjct: 34  HILKTGISLPETIQIFSKLNHFGHVIRVFSYM----LTQGIVPDSRVLPTVIKTCAALSA 89

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------- 142
           L  GKQ+H  A+  GL  + V++  L+  Y  F    +A     N   + P P       
Sbjct: 90  LQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDA----RNVFDKLPQPGVVTSSA 145

Query: 143 --------------------------------WNLLISLYVRDGFYAEALCVYKQMQSRR 170
                                           WN +IS + R G Y +A+ +++ M    
Sbjct: 146 LISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEG 205

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           ++ D  +  SVL A G++     G  +H   I        FV +AL+ MYGK        
Sbjct: 206 LKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMS 265

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +F++M E D  + N +++  +  GL   A ++F   Q +G+++NV++W ++   C + G
Sbjct: 266 GVFNEMDEVDVGACNALVTGLSRNGLVDNALEVF--KQFKGMDLNVVSWTSMIASCSQNG 323

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                LEL   M+ +    +SV     L AC ++ AL  GK  H  ++R        V +
Sbjct: 324 KDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGS 383

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           ALI MY++C  +  + + F M   +++++WNS+++GY       E+  +F  M R G +P
Sbjct: 384 ALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKP 443

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           ++V+   +L  C +    + G  +   + R       +  ++ +V +  RSG++ EA ++
Sbjct: 444 DHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAM 503

Query: 470 FDLMS-RRDEVTYTSLIAGYGIQGE---GRVALK-LFEEMNKN 507
              M    D   + +L++   +      G +A K +FE   +N
Sbjct: 504 IKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRN 546


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 198/649 (30%), Positives = 335/649 (51%), Gaps = 40/649 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++      +AFE F +++      D V  +F  ++  C   +   Q  Q+    I LG +
Sbjct: 124 YSQLNQFKEAFELFVQMQRCGTEPDYV--TFVTLLSGCNGHEMGNQITQVQTQIIKLGYD 181

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
              ++   LV  Y   +  + AC L +       + +N +I+ Y +DG   +A+ ++ +M
Sbjct: 182 SRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEM 241

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q+  ++   FT+ +VL A   + D+  G+ +HS  I     W++FV NAL+  Y K   V
Sbjct: 242 QNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV 301

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR+LFD+M E+D VS+N +IS YA  G  K AF LF E+Q    +     + T+    
Sbjct: 302 IDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATM---- 357

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          L   S+    ++G++IH   +        
Sbjct: 358 -------------------------------LSIASNTLDWEMGRQIHAQTIVTTADSEI 386

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V N+L+ MY++C     A ++F     +S + W +M+S Y      EE   LF +M ++
Sbjct: 387 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 446

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            V  +  T AS+L   A +A+L  GK+ H +I++   F  ++   ++L+++YA+ G + +
Sbjct: 447 SVIADQATFASLLRASASIASLSLGKQLHSFIIKSG-FMSNVFSGSALLDVYAKCGSIKD 505

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A   F  M  R+ V++ ++I+ Y   GE    LK F+EM  + ++PD V+ + VLSACSH
Sbjct: 506 AVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSH 565

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           SGLV EG   F  MT IY + P+ EH+A +VD+  R+G  N+A++++ +MP  P   MW+
Sbjct: 566 SGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWS 625

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRP-ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
           ++L AC+IH+N  +   AA++L       ++  YV ++N+YAA G W+ ++KV   MRD 
Sbjct: 626 SVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDR 685

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           GV+K+P  +WV+  +    F  +D  + Q +EI   +  LT+ M++ GY
Sbjct: 686 GVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGY 734



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 218/474 (45%), Gaps = 44/474 (9%)

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN V    +++ Y        A  L +    R  + W +LI  Y +   + EA  ++ QM
Sbjct: 81  KNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQM 140

Query: 167 QSRRIRGDNFTYPSVLKAC-GEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           Q      D  T+ ++L  C G  M     +V    I   ++  L V N LV  Y K  ++
Sbjct: 141 QRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRL 200

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D+A +LF +M E D+VS+N MI+ Y+  GL ++A  LFVEMQ  G++    T        
Sbjct: 201 DLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFT-------- 252

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG--ALKLGKEIHGSAVRGCYGE 343
                F  VL                        C+++G   + LG++IH   ++  +  
Sbjct: 253 -----FAAVL------------------------CANIGLDDIVLGQQIHSFVIKTNFVW 283

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFREM 402
              V NAL+  YS+   +  A  LF    E+  +++N ++SGY   D   + AF LFRE+
Sbjct: 284 NVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA-WDGKHKYAFDLFREL 342

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             +  +      A++L + +   + + G++ H   +     +E +L+ NSLV+MYA+ GK
Sbjct: 343 QFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSE-ILVGNSLVDMYAKCGK 401

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
             EA+ +F  ++ R  V +T++I+ Y  +G     L+LF +M +  +  D  T  ++L A
Sbjct: 402 FEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRA 461

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
            +    +  G KQ        G    +   + ++D+Y + G +  A +   +MP
Sbjct: 462 SASIASLSLG-KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 514



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 184/380 (48%), Gaps = 11/380 (2%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N  V  + K G++  AR+LF+KM  ++ VS N MIS Y   G   EA +LF  M    VE
Sbjct: 56  NFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGM----VE 111

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
              +TW  + GG  +   FK   EL  +M+   T  D V  V  L  C+         ++
Sbjct: 112 RTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQV 171

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
               ++  Y     V N L+  Y +   L  A  LFK   E   +++N+M++GY+     
Sbjct: 172 QTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLD 231

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVA--NLQHGKEFHCYILRRAMFNEHLLLW 450
           E++  LF EM  SG++P   T A++  LCA +   ++  G++ H +++ +  F  ++ + 
Sbjct: 232 EKAVNLFVEMQNSGLKPTEFTFAAV--LCANIGLDDIVLGQQIHSFVI-KTNFVWNVFVS 288

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+L++ Y++   V +A+ +FD M  +D V+Y  +I+GY   G+ + A  LF E+      
Sbjct: 289 NALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFD 348

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
                   +LS  S++ L  E  +Q    T +     ++     +VD+Y + G   +A+ 
Sbjct: 349 RKQFPFATMLSIASNT-LDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEM 407

Query: 571 IITKMPYTPTSAMWATLLGA 590
           I T + +  ++  W  ++ A
Sbjct: 408 IFTNLTHR-SAVPWTAMISA 426



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 14/198 (7%)

Query: 423 RVAN-LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
           RV N L++G+      L   M +++ +  N ++  Y +SG + EA+ +FD M  R  VT+
Sbjct: 58  RVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTW 117

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL---VVEGQKQFER 538
           T LI GY    + + A +LF +M +   +PD+VT V +LS C+   +   + + Q Q  +
Sbjct: 118 TILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIK 177

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
           +    G   +L     +VD Y ++  L+ A ++  +MP   + +  A + G    +   G
Sbjct: 178 L----GYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITG----YSKDG 229

Query: 599 IGEWAAEKLLETRPENSG 616
           + E A    +E   +NSG
Sbjct: 230 LDEKAVNLFVEM--QNSG 245


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 197/622 (31%), Positives = 326/622 (52%), Gaps = 52/622 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           + L  GKQ+HA  +  G E N  ++  LV  Y       ++  L+ +   R  + WN ++
Sbjct: 212 EGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVL 270

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS--CIDACH 205
           S   ++  + EAL   ++M    +  D FT  SVL AC  +  +  G+ +H+    +   
Sbjct: 271 SSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSL 330

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           + + FV +ALV MY    QV    R+FD M +R    WN MI+ YA     +EA  LF+E
Sbjct: 331 DENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIE 390

Query: 266 MQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           M+E  G+  N  T   +   C+R+G                                   
Sbjct: 391 MEESAGLLANSTTMAGVVPACVRSG----------------------------------- 415

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           A    + IHG  V+        V+NAL+ MYSR   +  A  +F    ++ ++TWN++++
Sbjct: 416 AFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIIT 475

Query: 385 GYTHLDCAEESAFLFREM-----------FRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           GY   +  E++  +  +M            R  ++PN +T+ +ILP CA ++ L  GKE 
Sbjct: 476 GYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEI 535

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H Y ++  +  + + + ++LV+MYA+ G +  ++ VFD +  R+ +T+  ++  YG+ G 
Sbjct: 536 HAYAIKNNLATD-VAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGN 594

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
            + A+ +   M    +KP+ VT ++V +ACSHSG+V EG K F  M   YG+ P  +H+A
Sbjct: 595 SQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYA 654

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           C+VDL GRAG + +A ++I  +P     +  W++LLGAC+IH N  IGE AA+ L++  P
Sbjct: 655 CVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEP 714

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
             + +YVL+AN+Y++ G W K  +VR  M+  GVRK PGC+W++ G+    F+  D+S+ 
Sbjct: 715 NVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 774

Query: 673 QAQEIYPLLGGLTELMKDAGYV 694
           Q++++   L  L E M+  GY+
Sbjct: 775 QSEKLRGYLETLWERMRKEGYI 796



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 139/488 (28%), Positives = 228/488 (46%), Gaps = 66/488 (13%)

Query: 106 EKNPVLV---PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           +K+P L+   P  VT   + ++Y      +  S+   P  W  L+   VR     EA+  
Sbjct: 23  QKHPYLLRATPTSVTDDVASTVYGAPSKFISQSH--SPEWWIDLLRSKVRSNLLREAVLT 80

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-------SLFVHNAL 215
           Y  M    I+ DNF +P++LKA  ++ D+D G+ +H+     H +       S+ V N L
Sbjct: 81  YIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHA-----HVYKFGYGVDSVTVANTL 135

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           V++Y K G      ++FD++ ER+ VSWN++IS+  S   W+ A + F  M +E VE + 
Sbjct: 136 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSS 195

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            T  ++A  C      +G+L                                +GK++H  
Sbjct: 196 FTLVSVALACSNFPMPEGLL--------------------------------MGKQVHAY 223

Query: 336 AVRGCYGEYEN-VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            +R   GE  + + N L+ MY +   L  + +L      + ++TWN++LS     +   E
Sbjct: 224 GLRK--GELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLE 281

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +    REM   GVEP+  TI+S+LP C+ +  L+ GKE H Y L+    +E+  + ++LV
Sbjct: 282 ALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALV 341

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDH 513
           +MY    +V     VFD M  R    + ++I GY        AL LF EM ++  +  + 
Sbjct: 342 DMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANS 401

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFA--CMVDLYGRAGLLNK 567
            TM  V+ AC  SG        F +  +I+G   +     + F    ++D+Y R G ++ 
Sbjct: 402 TTMAGVVPACVRSG-------AFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDI 454

Query: 568 AKEIITKM 575
           AK I  KM
Sbjct: 455 AKRIFGKM 462



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 191/405 (47%), Gaps = 31/405 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           + + ++  C  ++ L  GK+LHA A+  G L++N  +   LV  Y +     + C + + 
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDG 359

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDF 193
              R    WN +I+ Y ++ +  EAL ++ +M +S  +  ++ T   V+ AC        
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
              +H   +    +   FV NAL+ MY + G++D+A+R+F KM +RD V+WNT+I+ Y  
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVF 479

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL--DS 310
               ++A  +  +MQ                          +LE  +  R     L  +S
Sbjct: 480 SERHEDALLMLHKMQ--------------------------ILERKASERASRVSLKPNS 513

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           +  +  L +C+ + AL  GKEIH  A++        V +AL+ MY++C  L+ +  +F  
Sbjct: 514 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 573

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              +++ITWN ++  Y     ++++  + R M   GV+PN VT  S+   C+    +  G
Sbjct: 574 IPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEG 633

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
            +    + +          +  +V++  R+G+V EA  + +L+ R
Sbjct: 634 LKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPR 678



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 15/239 (6%)

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W  +L      +   E+   + +M   G++P+     ++L   A + ++  GK+ H ++ 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +     + + + N+LV +Y + G       VFD +S R++V++ SLI+      +  +AL
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSH----SGLVVEGQKQFERMTSIYGIFP-QLEHFA 553
           + F  M    ++P   T+V+V  ACS+     GL++  Q         YG+   +L  F 
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQ------VHAYGLRKGELNSFI 234

Query: 554 --CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA-CQIHRNTGIGEWAAEKLLE 609
              +V +YG+ G L  +K ++           W T+L + CQ  +     E+  E +LE
Sbjct: 235 INTLVAMYGKMGKLASSKVLLGSFEGRDL-VTWNTVLSSLCQNEQFLEALEYLREMVLE 292



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 40/231 (17%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+  C  + ALA+GK++HA AI   L  +  +   LV  YA       +  + +   IR 
Sbjct: 519 ILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRN 578

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN+++  Y   G   +A+ + + M  + ++ +  T+ SV  AC     V+ G  +  
Sbjct: 579 VITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFY 638

Query: 200 CI--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD---AVSWNTMISA----- 249
            +  D   E S   +  +V + G+ G+V  A +L + ++ R+   A +W++++ A     
Sbjct: 639 NMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLIN-LIPRNFDKAGAWSSLLGACRIHN 697

Query: 250 -----------------------------YASKGLWKEAFQLFVEMQEEGV 271
                                        Y+S GLW +A ++   M+ +GV
Sbjct: 698 NLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGV 748


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 196/547 (35%), Positives = 289/547 (52%), Gaps = 57/547 (10%)

Query: 176 FTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL------FVHNALVSMYGKFGQVDVAR 229
           FT+P  +K+C  +     G+ +H     CH +        FV  +L+SMYGK   +D AR
Sbjct: 11  FTFPFAIKSCAALSLPITGKQLH-----CHVFKTGCLLEPFVQTSLISMYGKCSLIDNAR 65

Query: 230 RLFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           +LFD+  +  +  V +N+++S YA     K+   LF EM+E GVE+N +T   +   C  
Sbjct: 66  KLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGI 125

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
            GN                        +GLG C H   +K G ++  S           V
Sbjct: 126 PGN------------------------LGLGMCVHGFCVKFGLDMDSS-----------V 150

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            N L+TMY +  ++     LF     K +ITWN+M++GY     A     L++EM   G 
Sbjct: 151 GNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGF 210

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAM----FNEHLLLWNSLVEMYARSGKV 463
            P+ +T+  +L  CA +  L  GKE     + R M    F+ +  L N+LV MYAR G +
Sbjct: 211 CPDPLTLVGVLSSCAHLGALSVGKE-----VERKMEGFGFSSNPFLNNALVNMYARCGNL 265

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A+ +FD M  +  V++T++I GYG+ G+G VA+ LF+EM +  IKPD    V+VLSAC
Sbjct: 266 KKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSAC 325

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           SH+GL  +G   F  M   YG+ P  EH++CMVDL GRAG LN+A+E+I  M      A+
Sbjct: 326 SHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGAL 385

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W  LLGAC+IHRN  + E A E+++E  P N+GYYVL++N+Y   G  + + +VR  MR 
Sbjct: 386 WGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRK 445

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
             ++K PGC++V+       F   D ++ Q  EIY  L  L  L+KD     K +    E
Sbjct: 446 RKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKNDHERRE 505

Query: 704 EIVEEIG 710
           E +  +G
Sbjct: 506 EYLNSMG 512



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/451 (24%), Positives = 204/451 (45%), Gaps = 43/451 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-EN 134
           +F   I  C  +     GKQLH      G    P +   L++ Y   SL +NA  L  EN
Sbjct: 12  TFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDEN 71

Query: 135 SNIR-YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
              R   + +N L+S Y  +    + + ++ +M+   +  +  T   +++ CG   ++  
Sbjct: 72  PQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGL 131

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  VH  C+    +    V N L++MY K G++D  R+LFD+M  +  ++WN MI+ YA 
Sbjct: 132 GMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQ 191

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            GL     +L+ EM+ +G                                    +     
Sbjct: 192 NGLANNVLELYKEMESKG------------------------------------FCPDPL 215

Query: 313 TVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
           T++G L +C+H+GAL +GKE+        +     + NAL+ MY+RC +L+ A  +F   
Sbjct: 216 TLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGM 275

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             KS+++W +++ GY      E +  LF EM R G++P+     S+L  C+       G 
Sbjct: 276 PVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGL 335

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGI 490
           ++   + R+         ++ +V++  R+G++ EA+ + + M  R D   + +L+    I
Sbjct: 336 DYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKI 395

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
                +A   FE++   +++P +     +LS
Sbjct: 396 HRNVELAELAFEQV--IELEPTNTGYYVLLS 424



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 4/177 (2%)

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M RSG  PN  T    +  CA ++    GK+ HC++ +     E   +  SL+ MY +  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEP-FVQTSLISMYGKCS 59

Query: 462 KVPEAKSVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            +  A+ +FD    SR+  V Y SL++GY +    +  + LF EM +  ++ + VTM+ +
Sbjct: 60  LIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGL 119

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           +  C   G +  G          +G+        C++ +Y ++G ++  +++  +MP
Sbjct: 120 VQPCGIPGNLGLGM-CVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMP 175



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 14/242 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   ++  C  + AL+ GK++       G   NP L   LV  YA       A  + +  
Sbjct: 216 TLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGM 275

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            ++  + W  +I  Y   G    A+ ++ +M    I+ D   + SVL AC      + G 
Sbjct: 276 PVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGL 335

Query: 196 VVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISA- 249
                ++   ++ L      ++ +V + G+ G+++ AR L + M  R D   W  ++ A 
Sbjct: 336 DYFGVME--RKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGAC 393

Query: 250 --YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
             + +  L + AF+  +E++       V+  N         GN +G+L +   MR ++  
Sbjct: 394 KIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYT----EAGNLEGILRVRMLMRKRKLK 449

Query: 308 LD 309
            D
Sbjct: 450 KD 451


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 195/575 (33%), Positives = 307/575 (53%), Gaps = 11/575 (1%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISLYV 151
           K+LHA  I   L  +P L+  ++  Y+  S   +   LV N  I  P  + WN +I    
Sbjct: 34  KELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFN-QIECPTLVVWNHMIRGLS 92

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLF 210
           +     EA+ +Y +M  + I G+N T   + KAC  + D+  GR +H   +    E  LF
Sbjct: 93  QSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLF 152

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V NAL+ MY   GQ+  A+++FD ML+RD VSWNT+I  Y+    +KE  +LF  M    
Sbjct: 153 VSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAAN 212

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           ++ + +T   I   C   G+++    ++  ++     +D     +G       G   L +
Sbjct: 213 IKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEID---VYLGNTLIDMYGRRSLAE 269

Query: 331 EIHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
              G   R    E   V  NAL+  +++  +L  A  LF    ++ +I+W SM++GY+  
Sbjct: 270 LAQGVFDR--MRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQA 327

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
               ++  LF+EM  + V+P+ VT+AS+L  CA +  L  G   H YI RR      + +
Sbjct: 328 SQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYI-RRHGVQADIYV 386

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            NSL++MY + G V +A  VF  M  +D V++TS+I+G  + G    AL LF +M +  +
Sbjct: 387 GNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGV 446

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +P H T V +L AC+H+GLV +G + FE M S++G+ P ++H+ C+VDL  R+G ++KA 
Sbjct: 447 QPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAY 506

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           E I KMP  P   +W  LL AC++H N  + E A ++LLE  P +SG YVL++N YA   
Sbjct: 507 EFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVD 566

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
            WD   K+R  M D  V+K  G + ++   + S +
Sbjct: 567 RWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNY 601



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/461 (26%), Positives = 198/461 (42%), Gaps = 45/461 (9%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
            C +V  +  G+++H  A+ LG E    +   L+  YA       A  + +    R  + 
Sbjct: 125 ACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVS 184

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN LI  Y +   Y E L ++  M +  I+ D  T   ++ AC  + D +F   +   I 
Sbjct: 185 WNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIK 244

Query: 203 ACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
             + E  +++ N L+ MYG+    ++A+ +FD+M ER+ VSWN ++  +A  G    A +
Sbjct: 245 ENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARK 304

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF  M +     +VI+W ++  G  +   F   ++L   M   +   D V     L AC+
Sbjct: 305 LFDNMPKR----DVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACA 360

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
           H+G L +G  +H    R        V N+LI MY +C  +  A  +F    +K  ++W S
Sbjct: 361 HLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTS 420

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++SG      A  +  LF +M R GV+P + T   IL  CA    +  G E+        
Sbjct: 421 VISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEY-------- 472

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKS---VFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
                         M +  G VP  K    V DL+SR   +                   
Sbjct: 473 -----------FESMESVHGLVPAMKHYGCVVDLLSRSGNID------------------ 503

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           K +E + K  I PD V    +LSAC   G VV  +   +R+
Sbjct: 504 KAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRL 544



 Score = 42.7 bits (99), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 82/206 (39%), Gaps = 5/206 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++     S A + F  +       D V  + A ++  C  +  L  G  +H      G++
Sbjct: 324 YSQASQFSDAVKLFQEMMAAKVKPDKV--TVASVLSACAHLGKLDVGWAVHHYIRRHGVQ 381

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L+  Y    +   A  +      +  + W  +IS    +GF   AL ++ QM
Sbjct: 382 ADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQM 441

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQ 224
               ++  + T+  +L AC     V+ G      +++ H    ++  +  +V +  + G 
Sbjct: 442 LREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGN 501

Query: 225 VDVARRLFDKM-LERDAVSWNTMISA 249
           +D A     KM +  D V W  ++SA
Sbjct: 502 IDKAYEFIKKMPIVPDVVVWRILLSA 527


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 300/565 (53%), Gaps = 33/565 (5%)

Query: 132  VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            V+ SN+     WN +I+   R G   EAL  +  ++   +     ++P  +K+C  + D+
Sbjct: 1102 VDKSNVH---SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 1158

Query: 192  DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
              GR+ H        E  LFV +AL+ MY K GQ+  AR LFD++  R+ VSW +MI+ Y
Sbjct: 1159 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGY 1218

Query: 251  ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                    A  LF +  EE  EV               GN                 LDS
Sbjct: 1219 VQNEQADNALLLFKDFLEEETEV-------------EDGN--------------NVPLDS 1251

Query: 311  VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
            V  V  L ACS V    + + +HG  V+  +     V N L+  Y++C     +  +F  
Sbjct: 1252 VVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDW 1311

Query: 371  TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQH 429
              EK  I+WNSM++ Y     + E+  +F  M R  GV  N VT++++L  CA    L+ 
Sbjct: 1312 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 1371

Query: 430  GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
            GK  H  +++  +   ++ +  S+++MY + G+V  AK  FD M  ++  ++T+++AGYG
Sbjct: 1372 GKCIHDQVIKMDL-EYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYG 1430

Query: 490  IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
            + G  + AL +F +M +  +KP+++T V+VL+ACSH+GLV EG   F  M   Y I P +
Sbjct: 1431 MHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGI 1490

Query: 550  EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
            EH+ CMVDL+GRAG LN+A  +I +M   P   +W +LLGAC+IH+N  +GE AA+KL E
Sbjct: 1491 EHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFE 1550

Query: 610  TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
              P+N GYYVL++N+YA  G W  + ++R  M++  + K PG + V+       FLV D 
Sbjct: 1551 LDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDK 1610

Query: 670  SNVQAQEIYPLLGGLTELMKDAGYV 694
             +   + IY  L  LT  ++  GYV
Sbjct: 1611 EHPHHEMIYKYLEKLTLELQKIGYV 1635



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 194/390 (49%), Gaps = 11/390 (2%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP 140
           +F     K     +Q+HA  I  GL  + +L  KL+  Y++      A  L         
Sbjct: 31  LFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCT 90

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-S 199
             WNL+I     +G   +AL +YK M  + I  D FT+P V+KAC   + +D G+VVH S
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            I       +FV N L+  Y K G    A ++F+KM  R+ VSW T+IS   S G  +EA
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++F E+  +    NV++W  +  G +R    +  LEL  RM+ +  + +    V  + A
Sbjct: 211 RRIFDEIPSK----NVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +G L LG+ IH  A++ C      +  ALI MYS+C  ++ A  +F+    KS+ TW
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTW 326

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           NSM++        +E+  LF EM R  V+P+ +T   +L  C  + N++ G  +   + +
Sbjct: 327 NSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ 386

Query: 440 R---AMFNEHLLLWNSLVEMYARSGKVPEA 466
               A   EH   +  + E+YARS  + EA
Sbjct: 387 HYGIAPIPEH---YECMTELYARSNNLDEA 413



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 168/364 (46%), Gaps = 36/364 (9%)

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           L  D +    +I  Y++ G    A  LF ++Q         TWN I       G  +  L
Sbjct: 55  LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCT----FTWNLIIRANTINGLSEQAL 110

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            L   M  Q    D       + AC++  ++ LGK +HGS ++  +     V+N LI  Y
Sbjct: 111 MLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFY 170

Query: 356 SRCK-------------------------------DLRHAYILFKMTAEKSIITWNSMLS 384
            +C                                DL+ A  +F     K++++W +M++
Sbjct: 171 FKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMIN 230

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY      EE+  LF+ M    + PN  T+ S++  C  +  L  G+  H Y ++  +  
Sbjct: 231 GYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCI-E 289

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             + L  +L++MY++ G + +A  VF+ M R+   T+ S+I   G+ G G+ AL LF EM
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM 349

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            +  +KPD +T + VL AC H   V EG   F RMT  YGI P  EH+ CM +LY R+  
Sbjct: 350 ERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNN 409

Query: 565 LNKA 568
           L++A
Sbjct: 410 LDEA 413



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 215/493 (43%), Gaps = 58/493 (11%)

Query: 44   LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
            + D A  G+  +A  AF+ +R           SF   I  C  +  L  G+  H  A   
Sbjct: 1114 IADLARGGDSVEALRAFSSLRKLGLIP--TRSSFPCTIKSCSALCDLVSGRMSHQQAFVF 1171

Query: 104  GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            G E +  +   L+  Y+      +A  L +   +R  + W  +I+ YV++     AL ++
Sbjct: 1172 GFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLF 1231

Query: 164  KQM--------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNA 214
            K              +  D+    SVL AC  +        VH   +    + S+ V N 
Sbjct: 1232 KDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNT 1291

Query: 215  LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM-QEEGVEV 273
            L+  Y K GQ  V++++FD M E+D +SWN+MI+ YA  GL  EA ++F  M +  GV  
Sbjct: 1292 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 1351

Query: 274  NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
            N +T + +                                   L AC+H GAL+ GK IH
Sbjct: 1352 NAVTLSAV-----------------------------------LLACAHAGALRAGKCIH 1376

Query: 334  GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
               ++        V  ++I MY +C  +  A   F    EK++ +W +M++GY     A+
Sbjct: 1377 DQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAK 1436

Query: 394  ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
            E+  +F +M R+GV+PNY+T  S+L  C+    ++ G  +   +  +      +  +  +
Sbjct: 1437 EALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCM 1496

Query: 454  VEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE---GRVAL-KLFEEMNKNQ 508
            V+++ R+G + EA ++   M  + D V + SL+    I      G +A  KLFE      
Sbjct: 1497 VDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFE------ 1550

Query: 509  IKPDHVTMVAVLS 521
            + PD+     +LS
Sbjct: 1551 LDPDNCGYYVLLS 1563



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 135/311 (43%), Gaps = 49/311 (15%)

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           ++IH   +R      + +   LI +YS    + +A +LF         TWN ++   T  
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
             +E++  L++ M   G+  +  T   ++  C    ++  GK  H  +++   F+  + +
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG-FSGDVFV 162

Query: 450 WNSLVEMYAR-------------------------------SGKVPEAKSVFDLMSRRDE 478
            N+L++ Y +                                G + EA+ +FD +  ++ 
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           V++T++I GY    +   AL+LF+ M    I P+  TMV+++ AC+  G++  G     R
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG-----R 277

Query: 539 MTSIYGIFPQLE----HFACMVDLYGRAGLLNKAKEIITKMPYT--PTSAMWATLLGACQ 592
               Y I   +E        ++D+Y + G +  A E+   MP    PT   W +++ +  
Sbjct: 278 GIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT---WNSMITSLG 334

Query: 593 IHRNTGIGEWA 603
           +H   G+G+ A
Sbjct: 335 VH---GLGQEA 342



 Score = 40.0 bits (92), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C ++  L  G+ +H  AI   +E    L   L+  Y+      +A  + E +
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFE-T 317

Query: 136 NIRYPLP-WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             R  LP WN +I+     G   EAL ++ +M+   ++ D  T+  VL AC  + +V  G
Sbjct: 318 MPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 206/654 (31%), Positives = 326/654 (49%), Gaps = 65/654 (9%)

Query: 60  FTRIRITAASH--DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVT 117
           FT+    +  H    + D    ++  C   K+L   +Q+H   I   + K   L+ + + 
Sbjct: 15  FTKALAKSQRHAQQTLTDKLLSLLKQCTSTKSL---QQIHTQMIINAIHKPNFLLHRFID 71

Query: 118 FYASFSLYNNACFLVENSNIRYP--LPWNLLI-SLYVRDGFYAEALCVYKQMQSRRIRGD 174
                  +NNA  L   S I YP    +N++I  L      +   +  Y QM+   IR +
Sbjct: 72  LKD----FNNASLLF--SQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPN 125

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-------CIDACHEWSLFVHNALVSMYGKFGQVDV 227
           NFTYP V  AC  ++ ++ G+  HS       C D        V ++L++MY + G++  
Sbjct: 126 NFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADG------HVRHSLITMYSRCGELGC 179

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           ARR+FD++ E+D VS                                   WN++  G  R
Sbjct: 180 ARRVFDEISEKDLVS-----------------------------------WNSMISGYSR 204

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
            G     + L   MR      D +  V  LGAC  +G L LG  I G  V         V
Sbjct: 205 MGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFV 264

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            +ALI MY +C DL  A  +F    +K ++TWN+M++GY     ++E+  LF  M  SGV
Sbjct: 265 GSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGV 324

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            P+ +T+  +L  CA +  L  GK    Y   R + N+ + +  +L++MYA+ G + +A 
Sbjct: 325 NPDKITLVGVLSACASIGALDFGKWLDTYASERGLQND-IYVSTALIDMYAKCGSLDDAL 383

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK--NQIKPDHVTMVAVLSACSH 525
            VF+ M +++EV++ ++I+     G  + +L LF+ M+K    ++P+ ++ + VLSAC H
Sbjct: 384 RVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVH 443

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           +GLV EG++ F+ M+S +G+ P++EH +CMVDL  RAG +++A + I KMP  P   +  
Sbjct: 444 AGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLG 503

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LLGACQ  RN  + E     LLE  P NSG Y++ + ++A    WD  A++R  MR  G
Sbjct: 504 ALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRG 563

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           V K PGC+W++  N    F   D  +  +Q++  ++  L E MK  GY  K +F
Sbjct: 564 VTKTPGCSWIEIENQVHEFHAGDVLHFISQDMCQVINLLNEEMKVEGYGPKVDF 617


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 206/630 (32%), Positives = 330/630 (52%), Gaps = 52/630 (8%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + H++ CC  +  L   K +H+     G L   P  + +L+  Y+     ++A  L ++ 
Sbjct: 28  YDHLLQCCTSLTTL---KLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHR 84

Query: 136 N------IRYPLPW--NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
           +       + P  +  N ++  Y   G   EA+ +Y  MQ   +  +NFTYP VLK C  
Sbjct: 85  HHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCAS 144

Query: 188 MMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
            +   FG VVH   +       LFV  ALV MY K G++  A  +FD+ML RD V W  M
Sbjct: 145 ELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAM 204

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           I+ Y       +A  LF +MQEEG                    F G           E 
Sbjct: 205 ITLYEQAERPLKALMLFRKMQEEG--------------------FLG----------DEI 234

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
              SVA+ +G      +G  ++   +HG AV   +    +V N+++ MY++C ++  A +
Sbjct: 235 TAISVASAVG-----QLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARL 289

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           +F    E++ I+WNSMLSGYT      ++  LF +M  S  +PN VT   ++  C+ + +
Sbjct: 290 VFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGS 349

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD--LMSRRDEVTYTSL 484
              G++ H +++   M +    L N++++MY + G +  A  +F+   +  RD  ++  L
Sbjct: 350 KHLGRKLHNFVISSKM-DIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVL 408

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           I+GYG+ G G+ AL+LF  M    ++P+ +T  ++LSACSH+GL+ EG+K F  MT +  
Sbjct: 409 ISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-S 467

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           + P+++H+ACMVD+ GRAG LN+A  +I K+P  P+  +W  LL AC+IH NT +GE AA
Sbjct: 468 VRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAA 527

Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
             L +  PE++GYYVL++N+YAA+  W ++  VR  M+  G++K    + ++ G     F
Sbjct: 528 NNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGF 587

Query: 665 LVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
              D S+   +E+Y  +  L   MK  GYV
Sbjct: 588 HTADQSSPYYREVYRKVESLAIEMKMVGYV 617



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 200/451 (44%), Gaps = 44/451 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C        G+ +H   +  G   +  +   LV  YA      +A  + +  
Sbjct: 134 TYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRM 193

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            IR  + W  +I+LY +     +AL ++++MQ     GD  T  SV  A G++ D     
Sbjct: 194 LIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAI 253

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   +       + V N++V MY K G V+ AR +FD+M ER+ +SWN+M+S Y   G
Sbjct: 254 SVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNG 313

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              +A  LF +MQ    + N +T                                    +
Sbjct: 314 RPTDALSLFNQMQASECDPNPVT-----------------------------------AL 338

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT--A 372
           I + ACS++G+  LG+++H   +         +RNA++ MY +C DL  A  +F      
Sbjct: 339 IMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELG 398

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           E+ + +WN ++SGY      +E+  LF  M   GVEPN +T  SIL  C+    +  G++
Sbjct: 399 ERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRK 458

Query: 433 FHCYI-LRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYGI 490
             C+  + +      +  +  +V+M  R+G + EA + +  + SR  +  + +L+    I
Sbjct: 459 --CFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRI 516

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            G     L      N  Q++P+H     ++S
Sbjct: 517 HGN--TELGEIAANNLFQLEPEHTGYYVLMS 545


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 207/652 (31%), Positives = 336/652 (51%), Gaps = 63/652 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTRI-RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           L  +A  G L +A   F  I R  + S++ +L +   +      V+AL     +      
Sbjct: 145 LAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALG-VSSSLADVRALFDEMPV------ 197

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
               K+ V    +++ +A+  L + A    + +  +  + WN +++ YVR+G   EA  +
Sbjct: 198 ----KDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEAREL 253

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222
           +                                      D+  EW     NAL++ Y + 
Sbjct: 254 F--------------------------------------DSRTEWDAISWNALMAGYVQR 275

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            Q++ A+++F+KM +RD VSWNTM+S YA +G   EA +LF    +     +V TW  I 
Sbjct: 276 SQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF----DVAPIRDVFTWTAIV 331

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G  + G    +LE   R+       ++V+    + A      ++  KE+  +       
Sbjct: 332 SGYAQNG----MLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA 387

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
            +    N ++T Y++   L  A  +F M  +K  ++W +ML+ Y+ +  +EE+  LF+EM
Sbjct: 388 SW----NTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            R G   N    A +L  CA +A L+ G + H  +++ A +     + N+L+ MY + G 
Sbjct: 444 GRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIK-AGYGVGCFVGNALLAMYFKCGS 502

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + EA S F+ M  RD V++ ++IAGY   G G+ AL++F+ M K   KPD +T+V VL+A
Sbjct: 503 MEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAA 562

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSHSGLV +G   F  M   +G+  + EH+ CM+DL GRAG L++A  ++  MP+ P S 
Sbjct: 563 CSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDST 622

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           MW  LLGA +IHRN+ +G  AAEK+ E  PEN+G YVL++N+YA++G W  + K+R  M 
Sbjct: 623 MWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMH 682

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           + GV+K+PG +W++  N    F V D+ + + ++IY  L  L   MK AGYV
Sbjct: 683 ERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYV 734



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 170/394 (43%), Gaps = 66/394 (16%)

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
           +CI    +  +   N  ++ + + G+V  A RLF  M  R   ++NTM++ YA+ G   +
Sbjct: 97  ACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQ 156

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A   F  +       +  ++NT+      + +   V  L   M  +    DSV+  + + 
Sbjct: 157 ALSFFRSIPRP----DSFSYNTLLHALGVSSSLADVRALFDEMPVK----DSVSYNVMIS 208

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYILFKMTAEKSII 377
           + ++ G + L +     A      E + V  N ++  Y R   ++ A  LF    E   I
Sbjct: 209 SHANHGLVSLARHYFDLAP-----EKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAI 263

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +WN++++GY      EE+  +F +M +  V                              
Sbjct: 264 SWNALMAGYVQRSQIEEAQKMFNKMPQRDV------------------------------ 293

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
                     + WN++V  YAR G + EA+ +FD+   RD  T+T++++GY   G    A
Sbjct: 294 ----------VSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEA 343

Query: 498 LKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
            ++F+ M +KN      V+  A+++A     ++ E ++ F+ M         +  +  M+
Sbjct: 344 KRVFDAMPDKNA-----VSWNAMMAAYVQRRMMEEAKELFDAMPC-----RNVASWNTML 393

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             Y +AG+L++A+ I   MP    +  WA +L A
Sbjct: 394 TGYAQAGMLDEARAIFGMMPQK-DAVSWAAMLAA 426



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 14/163 (8%)

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N  +  + R+G+VP+A+ +F  M RR   TY +++AGY   G    AL  F  +     +
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----R 166

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD  +   +L A   S  + + +  F+ M     +      +  M+  +   GL++ A+ 
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSV-----SYNVMISSHANHGLVSLARH 221

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
                P    +  W  +L A    RN  I E  A +L ++R E
Sbjct: 222 YFDLAP-EKDAVSWNGMLAA--YVRNGRIQE--ARELFDSRTE 259


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 186/603 (30%), Positives = 323/603 (53%), Gaps = 37/603 (6%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G  +HAC   LG + +  +   L+  Y+       A  + +    +  + W  +++ YV 
Sbjct: 164 GFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVE 223

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFV 211
           +  + E+L ++ +M+    + +NFT+ SVLKAC  +   + G+ VH C     +   LFV
Sbjct: 224 NECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFV 283

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
              L+ +Y K G VD A ++F++M + D + W+ MI+ YA     +EA ++F  M+   V
Sbjct: 284 GVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLV 343

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             N  T  ++                                   L AC+ +  L+LG +
Sbjct: 344 LPNQFTLASL-----------------------------------LQACASLVDLQLGNQ 368

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IH   V+        V NAL+ MY++C  + ++  LF  +   + ++WN+++ GY     
Sbjct: 369 IHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGN 428

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
            E++  LF++M    V+   VT +S+L  CA +A L+ G + H   ++  +++++ ++ N
Sbjct: 429 GEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVK-TIYDKNTVVGN 487

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +L++MYA+ G + +A+ VFD++   D+V++ ++I+GY + G    ALK FE M + + KP
Sbjct: 488 ALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKP 547

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D VT V +LSACS++GL+  GQ  F+ M   Y I P  EH+ CMV L GR+G L+KA ++
Sbjct: 548 DKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKL 607

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           + ++P+ P+  +W  LL AC IH +  +G  +A+++LE  PE+   +VL++N+YA    W
Sbjct: 608 VHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRW 667

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
             +A +RT M+  G+RK PG +W++       F V DTS+   + I  +L  L    ++ 
Sbjct: 668 GNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNE 727

Query: 692 GYV 694
           GYV
Sbjct: 728 GYV 730



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 135/554 (24%), Positives = 250/554 (45%), Gaps = 41/554 (7%)

Query: 59  AFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTF 118
           +F   R + +S +     +  ++  C +    A GK LH   I  G   +      L+ F
Sbjct: 29  SFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNF 88

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           Y  +    +A  L +    R  + +  LI  Y +   ++EA+ ++ ++Q      + F +
Sbjct: 89  YVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVF 148

Query: 179 PSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
            +VLK          G  VH+C+     +   FV  AL+  Y   G  + AR++FD +  
Sbjct: 149 STVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEY 208

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           +D VSW  M++ Y     ++E+ +LF  M+  G + N  T+ ++                
Sbjct: 209 KDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASV---------------- 252

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
                              L AC  +    +GK +HG A +  Y E   V   LI +Y +
Sbjct: 253 -------------------LKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIK 293

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
             D+  A  +F+   +  +I W+ M++ Y   + +EE+  +F  M R  V PN  T+AS+
Sbjct: 294 SGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASL 353

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           L  CA + +LQ G + HC++++  + + ++ + N+L++MYA+ G++  +  +F       
Sbjct: 354 LQACASLVDLQLGNQIHCHVVKVGL-DMNVFVSNALMDMYAKCGRMENSLQLFSESPNCT 412

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG-QKQF 536
           +V++ ++I GY   G G  AL LF++M + Q++   VT  +VL AC+    +  G Q   
Sbjct: 413 DVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHS 472

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
             + +IY     + +   ++D+Y + G +  A+ ++  M        W  ++    +H  
Sbjct: 473 LSVKTIYDKNTVVGN--ALIDMYAKCGNIKDAR-LVFDMLREHDQVSWNAMISGYSVHGL 529

Query: 597 TGIGEWAAEKLLET 610
            G      E +LET
Sbjct: 530 YGEALKTFESMLET 543



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           + +FL +    S  E N     S+L  C R  +   GK  HC I+++    + L   N L
Sbjct: 27  QRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLD-LFANNIL 85

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           +  Y +   +P+A  +FD M  R+ V++ +LI GY        A+ LF  + 
Sbjct: 86  LNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQ 137


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 210/645 (32%), Positives = 340/645 (52%), Gaps = 43/645 (6%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTF--YASFSLYNNACFLVENSNIRYPLP---- 142
           +  Q KQ+HA  +      +P    +L T   ++SFS  + A  + +    + P P    
Sbjct: 151 SFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFD----QIPQPNLYS 206

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGRVVHS-C 200
           WN+LI          +++ V+ +M      G N FT+P ++KA  E      G+ VH   
Sbjct: 207 WNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMA 266

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWK 257
           I       +FV N+L+  Y   G +D+A  +F+ M+E   +D VSWN+M++ +   G   
Sbjct: 267 IKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFE-MIEGNNKDIVSWNSMVTGFVQGGYPD 325

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           +A  LF  M+ EGV  N +T  ++   C +T N       L+  R    Y+D    ++ L
Sbjct: 326 KALDLFERMRNEGVHPNAVTMVSVMSACAKTMN-------LTLGRKVCDYIDRNEMMMNL 378

Query: 318 GACSHVGAL--KLGK-EIHGSAVRGCYGEYENVR----NALITMYSRCKDLRHAYILFKM 370
             C+    +  K G+ EI     RG +   E         +I  Y++  +   A  +F  
Sbjct: 379 NVCNATIDMFVKCGEVEI----ARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDS 434

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREM--FRSGVEPNYVTIASILPLCARVANLQ 428
              K I  WN ++SGY      +E+  +FRE+   +SG  P+ VT+ S L  CA++  + 
Sbjct: 435 MPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMD 494

Query: 429 HGKEFHCYILR-RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            G+  H YI + R   N +L    SL++MY++SG V +A  VF  +  +D   ++++IAG
Sbjct: 495 IGEWIHGYIKKERIQLNRNLA--TSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAG 552

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
             + G G  A++LF +M + Q+KP+ VT   +L ACSHSGLV EG++ F+ M  +YG+ P
Sbjct: 553 LAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVP 612

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
           + +H++CMVD+ GRAG L +A + I  MP  P++++W  LLGAC IH N  + E A  +L
Sbjct: 613 KTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRL 672

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
           LE  P N G YVL++N+YA TG W+ ++++R  MRD G++K  GC+ ++       F+V 
Sbjct: 673 LEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVG 732

Query: 668 DTSNVQAQEIYPLLGGLTELMKDAGYVVKE----EFCSEEEIVEE 708
           D ++  +++IY  L  +   ++  GYV       +F  EEE+ E+
Sbjct: 733 DNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEK 777


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 195/605 (32%), Positives = 321/605 (53%), Gaps = 44/605 (7%)

Query: 111 LVPKLVTFYASFSLYNNA-CFLVENSNIRYPLP-WNLLISLYVRDGFYAEALCVYKQMQS 168
           L P L   YA     + A   L  + + R  +P WN L++   R G    AL V++ + S
Sbjct: 46  LFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPS 105

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDV 227
              R D+ T+   L AC  + D+D    V      A +   +FV +AL+ +Y + G +  
Sbjct: 106 S-ARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGD 164

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A R+FD M  +D V+W+TM++ + S G   EA  ++  M+E GV  + +    +   C  
Sbjct: 165 AIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTL 224

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
           TGN                                    ++G  +HG  +R        +
Sbjct: 225 TGN-----------------------------------TRMGASVHGRFLRHGMRMDVVI 249

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
             +L+ MY++      A  +F+M   ++ ++WN+++SG+     A+E+  LFREM  SG+
Sbjct: 250 ATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGL 309

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           +P+   + S L  CA V  L+ GK  H +ILRR  F    +L  ++++MY++ G +  A+
Sbjct: 310 QPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQ--CILGTAVLDMYSKCGSLESAR 367

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            +F+ +S RD V + ++IA  G  G G  AL LF+E+N+  IKPDH T  ++LSA SHSG
Sbjct: 368 KLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSG 427

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG+  F+RM + +GI P  +H  C+VDL  R+GL+ +A E++  M   PT  +W  L
Sbjct: 428 LVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVAL 487

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L  C  ++   +GE  A+K+LE++PE+ G   L++N+YAA   WDK+ ++R  M+D G +
Sbjct: 488 LSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSK 547

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCS---EEE 704
           K+PG + ++       F+++D S+ Q QEI  ++  L+  M+  GYV + EF     +E+
Sbjct: 548 KVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDED 607

Query: 705 IVEEI 709
           + E++
Sbjct: 608 VKEQL 612



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C ++  L   + +   A A G  ++  +   L+  Y+      +A  + +  
Sbjct: 113 TFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGM 172

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + W+ +++ +V  G   EAL +Y +M+   +  D      V++AC    +   G 
Sbjct: 173 PRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGA 232

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   +       + +  +LV MY K G  DVAR++F  M  R+AVSWN +IS +A  G
Sbjct: 233 SVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNG 292

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF EM   G++                                    DS A V
Sbjct: 293 HADEALDLFREMSTSGLQP-----------------------------------DSGALV 317

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAE 373
             L AC+ VG LKLGK IHG  +R    E++ +   A++ MYS+C  L  A  LF   + 
Sbjct: 318 SALLACADVGFLKLGKSIHGFILRRL--EFQCILGTAVLDMYSKCGSLESARKLFNKLSS 375

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + ++ WN+M++      C  ++  LF+E+  +G++P++ T AS+L   +    ++ GK +
Sbjct: 376 RDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFW 435

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSLIAG 487
              ++              +V++ ARSG V EA  +   M     +  + +L++G
Sbjct: 436 FDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSG 490



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 2/243 (0%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   G   +A   ++R+R    + D V+     +I  C        G  +H   +  G+ 
Sbjct: 187 FVSAGRPVEALGMYSRMREHGVAEDEVV--MVGVIQACTLTGNTRMGASVHGRFLRHGMR 244

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + V+   LV  YA    ++ A  +      R  + WN LIS + ++G   EAL ++++M
Sbjct: 245 MDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREM 304

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
            +  ++ D+    S L AC ++  +  G+ +H  I    E+   +  A++ MY K G ++
Sbjct: 305 STSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCILGTAVLDMYSKCGSLE 364

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            AR+LF+K+  RD V WN MI+   + G   +A  LF E+ E G++ +  T+ ++     
Sbjct: 365 SARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALS 424

Query: 287 RTG 289
            +G
Sbjct: 425 HSG 427


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 208/663 (31%), Positives = 336/663 (50%), Gaps = 40/663 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G L +A + + R+    A  DV   +F  ++  CG V  L  G+++HA  +  GL 
Sbjct: 170 YGKAGFLEEALDLYHRMLWAGARPDVY--TFPCVLRSCGGVPDLTMGREVHAHVLRFGLG 227

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               ++  LVT YA       A  + +  ++   + WN +I+ +  +      L ++  M
Sbjct: 228 VEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHM 287

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               +  +  T  SV  A G + D+DF + +H+  +       +   N+L+ MY   G++
Sbjct: 288 LEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRM 347

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A  +F +M  RDA+SW  MIS Y   G   +A                          
Sbjct: 348 GEACTVFSRMETRDAMSWTAMISGYEKNGFPDKA-------------------------- 381

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                    LE+ + M       D V     L AC+ +G L +G ++H  A    +  Y 
Sbjct: 382 ---------LEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYI 432

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NAL+ MY++ K +  A  +FK   +K +I+W+SM++G+       E+ + FR M  +
Sbjct: 433 VVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML-A 491

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            V+PN VT  + L  CA   +L+ GKE H ++LR+ + +E  +  N+L+++Y + G+   
Sbjct: 492 DVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVP-NALLDLYVKCGQTGY 550

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A + F     +D V++  ++AG+   G G +AL  F EM +    PD VT VA+L  CS 
Sbjct: 551 AWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSR 610

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           +G+V +G + F  MT  Y I P L+H+ACMVDL  R G L +    I +MP TP +A+W 
Sbjct: 611 AGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWG 670

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LL  C+IHRN  +GE AA+ +LE  P ++GY+VL++++YA  G W +++KVR  MR  G
Sbjct: 671 ALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKG 730

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEI 705
           +    GC+WV+       FL DD S+ Q +EI  +L G+ E MK +G+   E +  E++ 
Sbjct: 731 LEHDYGCSWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERMKASGFAPVESYSLEDKE 790

Query: 706 VEE 708
           V +
Sbjct: 791 VSK 793



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 46/478 (9%)

Query: 160 LCVYKQMQ-------SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFV 211
           LC + ++Q       S     D   Y ++   C      + G       DA H  + L +
Sbjct: 72  LCAHGELQQALWLLESSPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFGLRL 131

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            NA++SM  +FG+   A ++F KM ERD                                
Sbjct: 132 GNAMLSMLVRFGETWHAWKVFAKMPERD-------------------------------- 159

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
              V +WN + GG  + G  +  L+L  RM       D       L +C  V  L +G+E
Sbjct: 160 ---VFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGRE 216

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H   +R   G   +V NAL+TMY++C D+  A  +F   +    I+WN+M++G+     
Sbjct: 217 VHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHE 276

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
            E    LF  M    VEPN +TI S+      +++L   KE H   ++R  F   +   N
Sbjct: 277 CEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRG-FATDVAFCN 335

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL++MY+  G++ EA +VF  M  RD +++T++I+GY   G    AL+++  M  N + P
Sbjct: 336 SLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSP 395

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D VT+ + L+AC+  G +  G K  E  TS  G    +     +V++Y ++ ++ KA E+
Sbjct: 396 DDVTVASALAACASLGRLDVGIKLHELATS-KGFIRYIVVANALVEMYAKSKIIEKAIEV 454

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
              MP     +  + + G C  H+N     +    L + +P NS  ++      AATG
Sbjct: 455 FKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLADVKP-NSVTFIAALAACAATG 511



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 234/499 (46%), Gaps = 57/499 (11%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIA------LGLEKNPVLVPKLVTFYASFSLYNNA 128
           D++  +   C   +A   G  L AC  A       GL     ++  LV F  ++  +   
Sbjct: 95  DAYVALFHLCEWRRAAEHG--LRACGHADAAHGTFGLRLGNAMLSMLVRFGETWHAWKVF 152

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             + E    R    WN+++  Y + GF  EAL +Y +M     R D +T+P VL++CG +
Sbjct: 153 AKMPE----RDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGV 208

Query: 189 MDVDFGRVVHSCIDACHEWSLFVH----NALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
            D+  GR VH+ +     + L V     NALV+MY K G V+ AR++FD M   D +SWN
Sbjct: 209 PDLTMGREVHAHV---LRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWN 265

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            MI+ +      +   +LF+ M E+ VE N++T                           
Sbjct: 266 AMIAGHFENHECEAGLELFLHMLEDEVEPNLMT--------------------------- 298

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
              + SV    GL     +  L   KEIH  AV+  +       N+LI MYS    +  A
Sbjct: 299 ---ITSVTVASGL-----LSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEA 350

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F     +  ++W +M+SGY      +++  ++  M  + V P+ VT+AS L  CA +
Sbjct: 351 CTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASL 410

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
             L  G + H     +  F  ++++ N+LVEMYA+S  + +A  VF  M  +D ++++S+
Sbjct: 411 GRLDVGIKLHELATSKG-FIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSM 469

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           IAG+    +   AL  F  M  + +KP+ VT +A L+AC+ +G +  G K+        G
Sbjct: 470 IAGFCFNHKNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGSLRCG-KEIHAHVLRQG 527

Query: 545 IFPQLEHFACMVDLYGRAG 563
           I  +      ++DLY + G
Sbjct: 528 IASEGYVPNALLDLYVKCG 546



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 6/260 (2%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAAS-HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           +  +   G   KA E +  + +   S  DV + S        G+   L  G +LH  A +
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGR---LDVGIKLHELATS 425

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            G  +  V+   LV  YA   +   A  + +    +  + W+ +I+ +  +    EAL  
Sbjct: 426 KGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYY 485

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           ++ M +  ++ ++ T+ + L AC     +  G+ +H+  +        +V NAL+ +Y K
Sbjct: 486 FRHMLAD-VKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVK 544

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            GQ   A   F     +D VSWN M++ + + G    A   F EM E G   + +T+  +
Sbjct: 545 CGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVAL 604

Query: 282 AGGCLRTGNFKGVLELLSRM 301
             GC R G      EL   M
Sbjct: 605 LCGCSRAGMVSQGWELFHSM 624


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 195/621 (31%), Positives = 321/621 (51%), Gaps = 39/621 (6%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+ ++  C   + L  G+++HA  +  G +K+      LV  Y+     + A  +     
Sbjct: 205 FSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVP 264

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-- 194
               + WN  IS  V  G    AL +  QM+S  +  + FT  S+LKAC       F   
Sbjct: 265 KTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALG 324

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H   I AC +   ++  ALV MY K+G +D AR++F+ +  +D              
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKD-------------- 370

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                                ++ WN +  GC   G     L L  RMR + + ++    
Sbjct: 371 ---------------------LLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTL 409

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L + + + A+    ++H  A +  +    +V N LI  Y +C  LR+A  +F+  + 
Sbjct: 410 AAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSS 469

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
            +II + SM++  +  D  E++  LF EM R G+EP+   ++S+L  CA ++  + GK+ 
Sbjct: 470 DNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQV 529

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H ++++R    + +   N+LV  YA+ G + +A   F  +  +  V+++++I G    G 
Sbjct: 530 HAHLIKRKFMTD-VFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGH 588

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G+ AL +F  M   +I P+H+T+ +VL AC+H+GLV E +  F  M  ++GI    EH++
Sbjct: 589 GKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYS 648

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CM+DL GRAG L+ A E++  MP+   +A+W  LL A ++HR+  +G+ AAEKL    PE
Sbjct: 649 CMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPE 708

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
            SG +VL+AN YA+ G WD++AKVR  M+D  V+K P  +WV+  +    F+V D S+ +
Sbjct: 709 KSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPR 768

Query: 674 AQEIYPLLGGLTELMKDAGYV 694
           A++IY  L  L +LM  AGYV
Sbjct: 769 ARDIYAKLEELGDLMSKAGYV 789



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 131/489 (26%), Positives = 225/489 (46%), Gaps = 46/489 (9%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
            ++L  G  +HA  +  GL         L++FY+   L  +A  + + +     + W+ L
Sbjct: 17  TQSLFLGAHIHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSL 74

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH 205
           ++ Y  +    EAL  ++ M++R +R + F  P VLK C    D   G  VH+  +    
Sbjct: 75  VTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLK-CAP--DAGLGVQVHAVAVSTGL 131

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKML-ERDAVSWNTMISAYASKGLWKEAFQLFV 264
              +FV NALV+MYG FG VD ARR+FD+   +R+AVSWN M+SA+       +A +LF 
Sbjct: 132 SGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFG 191

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           EM   GV  N   ++ +                                   + AC+   
Sbjct: 192 EMVWSGVRPNEFGFSCV-----------------------------------VNACTGSR 216

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L+ G+++H   VR  Y +     NAL+ MYS+  D+  A ++F    +  +++WN+ +S
Sbjct: 217 DLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFIS 276

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP--LCARVANLQHGKEFHCYILRRAM 442
           G       + +  L  +M  SG+ PN  T++SIL     A       G++ H +++ +A 
Sbjct: 277 GCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMI-KAC 335

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            +    +  +LV+MYA+ G + +A+ VF+ + R+D + + +LI+G    G    +L LF 
Sbjct: 336 ADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFC 395

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M K     +  T+ AVL + + S   +    Q   +    G          ++D Y + 
Sbjct: 396 RMRKEGSDINRTTLAAVLKSTA-SLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKC 454

Query: 563 GLLNKAKEI 571
             L  A ++
Sbjct: 455 NCLRYANKV 463



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/525 (23%), Positives = 242/525 (46%), Gaps = 56/525 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-ENSNIR 138
           I+  C     L  G Q+HA A++ GL  +  +   LV  Y  F   + A  +  E +  R
Sbjct: 108 IVLKCAPDAGL--GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDR 165

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
             + WN ++S +V++   ++A+ ++ +M    +R + F +  V+ AC    D++ GR VH
Sbjct: 166 NAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVH 225

Query: 199 S-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
           +  +   ++  +F  NALV MY K G + +A  +F K+ + D                  
Sbjct: 226 AMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTD------------------ 267

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD--SVATVI 315
                            V++WN    GC+  G+ +  LELL +M++     +  ++++++
Sbjct: 268 -----------------VVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
              A +  GA  LG++IHG  ++ C    + +  AL+ MY++   L  A  +F+    K 
Sbjct: 311 KACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKD 370

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++ WN+++SG +H  C  ES  LF  M + G + N  T+A++L   A +  +    + H 
Sbjct: 371 LLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHA 430

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
              +    ++  ++ N L++ Y +   +  A  VF+  S  + + +TS+I        G 
Sbjct: 431 LAEKIGFLSDSHVV-NGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGE 489

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK------QFERMTSIYGIFPQL 549
            A+KLF EM +  ++PD   + ++L+AC+      +G++      + + MT ++      
Sbjct: 490 DAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFA----- 544

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
                +V  Y + G +  A    + +P     + W+ ++G    H
Sbjct: 545 --GNALVYTYAKCGSIEDADLAFSGLPDKGVVS-WSAMIGGLAQH 586



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 146/302 (48%), Gaps = 17/302 (5%)

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           +L LG  IH   ++   G     RN L++ YS+C+    A  +F  T +   ++W+S+++
Sbjct: 19  SLFLGAHIHAHLLKS--GLLHAFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVT 76

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
            Y++     E+   FR M   GV  N   +  +L  CA  A L  G + H   +   +  
Sbjct: 77  AYSNNALPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAGL--GVQVHAVAVSTGLSG 133

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           + + + N+LV MY   G V EA+ VFD  +R R+ V++  +++ +        A++LF E
Sbjct: 134 D-IFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGE 192

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M  + ++P+      V++AC+ S  +  G+K    M    G    +     +VD+Y + G
Sbjct: 193 MVWSGVRPNEFGFSCVVNACTGSRDLEAGRK-VHAMVVRTGYDKDVFTANALVDMYSKLG 251

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
            ++ A  +  K+P T   + W   +  C +H   G  + A E LL+ +  +SG   L+ N
Sbjct: 252 DIHMAALVFGKVPKTDVVS-WNAFISGCVLH---GHDQHALELLLQMK--SSG---LVPN 302

Query: 624 MY 625
           ++
Sbjct: 303 VF 304



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 10/261 (3%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           ++   F R+R   +  D+   + A ++     ++A++   Q+HA A  +G   +  +V  
Sbjct: 389 ESLSLFCRMRKEGS--DINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNG 446

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  Y   +    A  + E  +    + +  +I+   +     +A+ ++ +M  + +  D
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
            F   S+L AC  +   + G+ VH+  I       +F  NALV  Y K G ++ A   F 
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFS 566

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT----- 288
            + ++  VSW+ MI   A  G  K A  +F  M +E +  N IT  ++   C        
Sbjct: 567 GLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDE 626

Query: 289 --GNFKGVLELLSRMRTQETY 307
             G F  + E+    RT+E Y
Sbjct: 627 AKGYFSSMKEMFGIDRTEEHY 647


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 192/536 (35%), Positives = 293/536 (54%), Gaps = 10/536 (1%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y +++ AC     ++ GR VH+   A +    +F+ N L+ MY K G +  A+ LFD+M 
Sbjct: 90  YSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMG 149

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            RD  SWNTMI  YA  G  ++A +LF EM +     +  +WN    G +     +  LE
Sbjct: 150 HRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQR----DNFSWNAAISGYVTHNQPREALE 205

Query: 297 LLSRM-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           L   M R + +  +       L A + +  L+LGKEIHG  +R      E V +AL+ +Y
Sbjct: 206 LFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLY 265

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
            +C  L  A  +F    ++ +++W +M+         EE   LFR++ +SGV PN  T A
Sbjct: 266 GKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFA 325

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
            +L  CA  A    GKE H Y++  A ++      ++LV MY++ G    A+ VF+ M +
Sbjct: 326 GVLNACADHAAEHLGKEVHGYMMH-AGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQ 384

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            D V++TSLI GY   G+   AL  FE + ++  KPD VT V VLSAC+H+GLV +G + 
Sbjct: 385 PDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEY 444

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  +   +G+    +H+AC++DL  R+G   +A+ II  MP  P   +WA+LLG C+IH 
Sbjct: 445 FHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHG 504

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  + + AA+ L E  PEN   Y+ +AN+YA  G W ++A VR  M ++G+ K PG +W+
Sbjct: 505 NLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWI 564

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEE 708
           +       FLV DTS+ +  +I+  LG L++ +K+ GYV    F     EEE  E+
Sbjct: 565 EIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQ 620



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 187/425 (44%), Gaps = 49/425 (11%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-RIRG 173
           ++  YA       A  L +    R    WN  IS YV      EAL +++ MQ   R   
Sbjct: 159 MIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSS 218

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           + FT  S L A   +  +  G+ +H   I         V +AL+ +YGK G +D AR +F
Sbjct: 219 NKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIF 278

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D+M +RD VSW TMI      G  +E F LF ++ + GV  N  T             F 
Sbjct: 279 DQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYT-------------FA 325

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
           GV                      L AC+   A  LGKE+HG  +   Y       +AL+
Sbjct: 326 GV----------------------LNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALV 363

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MYS+C + R A  +F    +  +++W S++ GY      +E+   F  + +SG +P+ V
Sbjct: 364 HMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQV 423

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T   +L  C     +  G E+   I  +         +  ++++ ARSG+  EA+++ D 
Sbjct: 424 TYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDN 483

Query: 473 MS-RRDEVTYTSLIAGYGIQGE----GRVALKLFEEMNKNQIKPDH-VTMVAVLSACSHS 526
           M  + D+  + SL+ G  I G      R A  L+E      I+P++  T + + +  +++
Sbjct: 484 MPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYE------IEPENPATYITLANIYANA 537

Query: 527 GLVVE 531
           GL  E
Sbjct: 538 GLWSE 542



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 146/356 (41%), Gaps = 55/356 (15%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           +  L  GK++H   I   L  + V+   L+  Y      + A  + +    R  + W  +
Sbjct: 233 IPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTM 292

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH 205
           I     DG   E   +++ +    +R + +T+  VL AC +      G+ VH   + A +
Sbjct: 293 IHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGY 352

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           +   F  +ALV MY K G   VARR+F++M + D VSW ++I  YA  G   EA   F  
Sbjct: 353 DPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFEL 412

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL---DSVATVIGLGACSH 322
           + + G + + +T+  +   C   G     LE    ++ +   +   D  A VI L A S 
Sbjct: 413 LLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARS- 471

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
                           G + E EN                   I+  M  +     W S+
Sbjct: 472 ----------------GRFKEAEN-------------------IIDNMPVKPDKFLWASL 496

Query: 383 LSG---YTHLDCAEESAFLFREMFRSGVEP----NYVTIASILP---LCARVANLQ 428
           L G   + +L+ A+ +A    E     +EP     Y+T+A+I     L + VAN++
Sbjct: 497 LGGCRIHGNLELAKRAAKALYE-----IEPENPATYITLANIYANAGLWSEVANVR 547



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 12/220 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++  C    A   GK++H   +  G +     +  LV  Y+       A  +    
Sbjct: 323 TFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEM 382

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           +    + W  LI  Y ++G   EAL  ++ +     + D  TY  VL AC     VD G 
Sbjct: 383 HQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGL 442

Query: 196 VVHSCIDACHEWSLFVHNA-----LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
                I   H     +H A     ++ +  + G+   A  + D M ++ D   W +++  
Sbjct: 443 EYFHSIKEKHG---LMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGG 499

Query: 250 YASKG---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
               G   L K A +   E++ E     +   N  A   L
Sbjct: 500 CRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGL 539


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 207/663 (31%), Positives = 334/663 (50%), Gaps = 63/663 (9%)

Query: 59  AFTRIRITAASHDVVLDSFA-HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVT 117
            FT +  + ++H     SF+ H +    K+  L  GKQLHA  I LG      L  +++ 
Sbjct: 62  GFTNLVDSCSTH-----SFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLH 116

Query: 118 FYASFSLYNNACFLVENSNIRYPLPWNLLIS---------LYVRDGFYAEALCVYKQMQS 168
            Y     +N+ C + +   ++  + WN LI            VR GF+      ++QM  
Sbjct: 117 VYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFH-----YFRQMVL 171

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDV 227
             +  +  T   +L+A  E+ DV   R +H  I  +  + + FV +ALV  Y KFG VD 
Sbjct: 172 EMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDE 231

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A+  FD++  RD V WN M+S YA  G+  +AF +F  M+ EGV+ +  T+ ++   C  
Sbjct: 232 AQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSC-- 289

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                GV                      LG+C       LGK++HG  +R  +     V
Sbjct: 290 -----GV----------------------LGSCG------LGKQVHGLIIRLSFDLDVLV 316

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            +AL+ MYS+ +++  A   F     K+I++W +M+ GY      +E+  L +EM R   
Sbjct: 317 ASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYT 376

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            P+ + +ASIL  C  ++      + H Y++    F   L + N+LV  Y++ G +  A 
Sbjct: 377 YPDELALASILSSCGNLSATSEVVQVHAYVVENG-FEAFLSIANALVSAYSKCGSIGSAF 435

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
             F  ++  D +++TSL+  Y   G  +  +++FE+M  + ++PD V  + VLSAC+H G
Sbjct: 436 QSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGG 495

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            V+EG   F  M ++Y I P  EH+ C++DL GRAG L++A  ++T MP  P S      
Sbjct: 496 FVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAF 555

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC++HRN G+  WA+EKL    P     Y L++NMYA+ G W  +A+VR  MR+    
Sbjct: 556 LGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDF 615

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVE 707
           K+PGC+W++       F+  D ++ +A ++Y +L  L  LM++      ++    E +VE
Sbjct: 616 KVPGCSWMEIAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMEE------DDVSDMEVLVE 669

Query: 708 EIG 710
             G
Sbjct: 670 SFG 672



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 3/244 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   KAF  F  +R+     D    +F  +I  CG + +   GKQ+H   I L  +
Sbjct: 254 YALNGVQGKAFGVFKLMRLEGVKGDNF--TFTSMINSCGVLGSCGLGKQVHGLIIRLSFD 311

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + ++   LV  Y+      +A    +   ++  + W  +I  Y + G   EA+ + ++M
Sbjct: 312 LDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEM 371

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
                  D     S+L +CG +        VH+  ++   E  L + NALVS Y K G +
Sbjct: 372 IRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSI 431

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A + F  + E D +SW +++ AYA  GL KE  ++F +M    V  + + +  +   C
Sbjct: 432 GSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSAC 491

Query: 286 LRTG 289
              G
Sbjct: 492 AHGG 495


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 221/662 (33%), Positives = 343/662 (51%), Gaps = 58/662 (8%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYAS 121
           I ++  S+ ++L SF    +   +   L +G+++H   I  GL    V +   LV  YA 
Sbjct: 24  IDVSPESYVILLSSFPE--YSLAEQVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAK 81

Query: 122 FSLYNNA----CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFT 177
                +A    CF++E  ++     WN +I+   ++G + EA+  Y+ M+   I   +FT
Sbjct: 82  CGSIADARRVFCFMMEKDSV----SWNSMITGLDQNGCFIEAVERYQSMRRHEILPGSFT 137

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
             S L +C  +     G+ +H   +    + ++ V NAL+++Y + G ++  R++F  M 
Sbjct: 138 LISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP 197

Query: 237 ERDAVSWNTMISAYA-SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           E D VSWN++I A A S+    EA   F+     G ++N IT++++              
Sbjct: 198 EHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVL------------- 244

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                         S  + +  G        +LGK+IHG A++    +     NALI  Y
Sbjct: 245 --------------SAVSSLSFG--------ELGKQIHGLALKYNIADEATTENALIACY 282

Query: 356 SRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
            +C ++     +F +M+  +  +TWNSM+SGY H +   ++  L   M ++G   +    
Sbjct: 283 GKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMY 342

Query: 415 ASILPLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           A++L   A VA L+ G E H C +  RA     +++ ++LV+MY++ G++  A   F+ M
Sbjct: 343 ATVLSAFASVATLERGMEVHACSV--RACLESDVVVGSALVDMYSKCGRLDYALRFFNTM 400

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN-KNQIKPDHVTMVAVLSACSHSGLVVEG 532
             R+  ++ S+I+GY   G+G  ALKLF  M    Q  PDHVT V VLSACSH+GL+ EG
Sbjct: 401 PVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEG 460

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC- 591
            K FE M+  YG+ P++EHF+CM DL GRAG L+K ++ I KMP  P   +W T+LGAC 
Sbjct: 461 FKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVLIWRTVLGACC 520

Query: 592 -QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
               R   +G+ AAE L +  PEN+  YVL+ NMYAA G W+ L K R  M+D  V+K  
Sbjct: 521 RANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEA 580

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVE 707
           G +WV   +    F+  D S+     IY  L  L   M+DAGYV +  F     E+E  E
Sbjct: 581 GYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKE 640

Query: 708 EI 709
           EI
Sbjct: 641 EI 642



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 6/203 (2%)

Query: 392 AEESAFLFREMFRS-GVEP-NYVTIASILP--LCARVANLQHGKEFHCYILRRAMFNEHL 447
            EE+  LF +M     V P +YV + S  P    A    L+ G+E H +++   + +  +
Sbjct: 10  GEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVITTGLVDFMV 69

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N LV MYA+ G + +A+ VF  M  +D V++ S+I G    G    A++ ++ M ++
Sbjct: 70  GIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRH 129

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
           +I P   T+++ LS+C+       GQ Q    +   GI   +     ++ LY   G LN+
Sbjct: 130 EILPGSFTLISSLSSCASLKWAKLGQ-QIHGESLKLGIDLNVSVSNALMTLYAETGYLNE 188

Query: 568 AKEIITKMPYTPTSAMWATLLGA 590
            ++I + MP       W +++GA
Sbjct: 189 CRKIFSSMP-EHDQVSWNSIIGA 210


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 214/650 (32%), Positives = 345/650 (53%), Gaps = 48/650 (7%)

Query: 49  GRGNLSKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLE 106
           GR  +S   E F ++R T    +VV D +  + ++  C  ++ L  GKQ+HA  +  G E
Sbjct: 117 GRSXVS--LELFAQMRET----NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTE 170

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +V  L+ FY   +       L +   ++  + W  +IS Y+++ F  EA+ ++ +M
Sbjct: 171 MDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEM 230

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
                + D F   SVL +CG +  ++ GR VH+  I A  E + FV N L+ MY      
Sbjct: 231 NRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMY------ 284

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
                                    A   L  +A ++F  M E+    NVI++N +  G 
Sbjct: 285 -------------------------AKSNLLXDAKKVFDVMAEQ----NVISYNAMIEGY 315

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSHVGALKLGKEIHGSAVRGCYGEY 344
                    LEL   MR +  +  S+ T + L G  + + AL+L K+IHG  ++      
Sbjct: 316 SSQEKLSEALELFHEMRVR-LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLD 374

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
               +ALI +YS+C  ++ A  +F+   EK I+ WN+M  GYT     EE+  L+  +  
Sbjct: 375 LFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQF 434

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           S  +PN  T A+++   + +A+L+HG++FH  +++  + +    + N+LV+MYA+ G + 
Sbjct: 435 SRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGL-DFCPFVTNALVDMYAKCGSIE 493

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           EA+ +F+    RD V + S+I+ +   GE   AL +F EM K  I+P++VT VAVLSACS
Sbjct: 494 EARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS 553

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H+G V +G   F  M   +GI P  EH+AC+V L GR+G L +AKE I KMP  P + +W
Sbjct: 554 HAGXVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVW 612

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
            +LL AC+I  N  +G++AAE  + T P++SG Y+L++N++A+ G W  + KVR  M   
Sbjct: 613 RSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSS 672

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            V K PG +W++  N  + F+   T++ +A  I  +L  L + +K AGYV
Sbjct: 673 EVVKEPGRSWIEVNNKVNVFIARXTTHREADMIGSVLDILIQHIKGAGYV 722



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/535 (24%), Positives = 256/535 (47%), Gaps = 45/535 (8%)

Query: 41  LETLKDFAGRGNLSKAFEAFTRIRITAASH--DVVLDSFAHIIFCCGKVKALAQGKQLHA 98
           ++  KD    G   +A   F  ++  +  H  + VL   A +I  C ++  + +G QLH 
Sbjct: 5   MQKTKDMEDEGYSEEALMVFVDLQRKSGEHPNEFVL---ASVIRACTQLGVVEKGAQLHG 61

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
             +  G +++  +   L+ FY+       A  + +    +  + W  +I+ Y + G    
Sbjct: 62  FVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXV 121

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVS 217
           +L ++ QM+   +  D +   SVL AC  +  ++ G+ +H+  +    E  + V N L+ 
Sbjct: 122 SLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLID 181

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
            Y K  +V   R+LFD+M+ ++ +SW TMIS Y       EA +LF        E+N + 
Sbjct: 182 FYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFG-------EMNRLG 234

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           W                              D  A    L +C  + AL+ G+++H   +
Sbjct: 235 WKP----------------------------DGFACTSVLTSCGSLEALEQGRQVHAYTI 266

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           +      E V+N LI MY++   L  A  +F + AE+++I++N+M+ GY+  +   E+  
Sbjct: 267 KANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALE 326

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           LF EM      P+ +T  S+L + A +  L+  K+ H  I++  + +  L   ++L+++Y
Sbjct: 327 LFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGV-SLDLFAGSALIDVY 385

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           ++   V +A+ VF+ M+ +D V + ++  GY    E   ALKL+  +  ++ KP+  T  
Sbjct: 386 SKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFA 445

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIF-PQLEHFACMVDLYGRAGLLNKAKEI 571
           A+++A S+   +  GQ+   ++  +   F P + +   +VD+Y + G + +A+++
Sbjct: 446 ALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKM 498



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 139/261 (53%), Gaps = 10/261 (3%)

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ +G ++ G ++HG  VR  + +   V  +LI  YS+  B+  A ++F    EK+ +T
Sbjct: 46  ACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVT 105

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W ++++GYT    +  S  LF +M  + V P+   ++S+L  C+ +  L+ GK+ H Y+L
Sbjct: 106 WTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVL 165

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           RR      + + N L++ Y +  +V   + +FD M  ++ +++T++I+GY        A+
Sbjct: 166 RRGT-EMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAM 224

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE--HFA--C 554
           KLF EMN+   KPD     +VL++C     + +G     R    Y I   LE   F    
Sbjct: 225 KLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQG-----RQVHAYTIKANLESNEFVKNG 279

Query: 555 MVDLYGRAGLLNKAKEIITKM 575
           ++D+Y ++ LL  AK++   M
Sbjct: 280 LIDMYAKSNLLXDAKKVFDVM 300



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 128/259 (49%), Gaps = 3/259 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ ++ +  LS+A E F  +R+      ++  +F  ++     + AL   KQ+H   I  
Sbjct: 312 IEGYSSQEKLSEALELFHEMRVRLFPPSLL--TFVSLLGVSASLFALELSKQIHGLIIKX 369

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G+  +      L+  Y+  S   +A  + E  N +  + WN +   Y +     EAL +Y
Sbjct: 370 GVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLY 429

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
             +Q  R + + FT+ +++ A   +  +  G+  H+  +    ++  FV NALV MY K 
Sbjct: 430 STLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKC 489

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G ++ AR++F+  + RD V WN+MIS +A  G  +EA  +F EM +EG++ N +T+  + 
Sbjct: 490 GSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVL 549

Query: 283 GGCLRTGNFKGVLELLSRM 301
             C   G  +  L   + M
Sbjct: 550 SACSHAGXVEDGLNHFNSM 568


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 197/604 (32%), Positives = 314/604 (51%), Gaps = 51/604 (8%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD-FGR 195
           +R  + +N +I+ Y  +     A+ ++  MQ    R DN+T+ SVL A   + + +   +
Sbjct: 109 MRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQ 168

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDV---------ARRLFDKMLERDAVSWNT 245
            +H + + +   +   V NAL+S Y K               AR+LFD+M  RD +SW T
Sbjct: 169 QLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTT 228

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           +I+ Y  K    +A + F+    + + V    WN +  G    G +    E+  +M   +
Sbjct: 229 IITGYV-KNNDLDAAKEFLNGTSKKLGV---AWNAMISGYAHRGLYLEAFEMFRKMIMSK 284

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV----RNALITMYSRCKDL 361
             LD       +  C++ G  +LGKE+H   ++       +V     NALIT Y +C  +
Sbjct: 285 IQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKV 344

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR----------------- 404
             A  +F    E+ +++WN +LSGY ++ C +E+   F EM                   
Sbjct: 345 DIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIG 404

Query: 405 --------------SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
                          G EP     A  +  C+ + +L+HG++ H  ++R   +   L   
Sbjct: 405 FAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYG-YESSLSAG 463

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+L+ MYAR G V  A  +F  M   D +++ ++IA  G  G+G  A++LFEEM K  I 
Sbjct: 464 NALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGIL 523

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD ++ + V+SACSH+GLV EG+K F+ M ++YG+ P  EH+A ++DL  RAG  ++AKE
Sbjct: 524 PDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKE 583

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
           ++  MP+ P + +W  LL  C+IH N  +G  AAE+L E +P++ G YVL++NMYA  G 
Sbjct: 584 VMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQ 643

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           W+ +AKVR  MRD GV+K PGC+W++  N    FLV D ++ + ++IY  L  L   M+ 
Sbjct: 644 WNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRK 703

Query: 691 AGYV 694
            GYV
Sbjct: 704 IGYV 707



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 208/413 (50%), Gaps = 12/413 (2%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           ++T Y   +  + A   +  ++ +  + WN +IS Y   G Y EA  ++++M   +I+ D
Sbjct: 229 IITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLD 288

Query: 175 NFTYPSVLKACGEMMDVDFGRVVH-----SCIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
            FT+ SV+  C        G+ +H     +  +   + ++ V+NAL++ Y K G+VD+A+
Sbjct: 289 EFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQ 348

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +F+KM ERD VSWN ++S Y +     EA   F EM E+    N+++W  +  G  + G
Sbjct: 349 EIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEK----NILSWIIMISGLAQIG 404

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
             +  L+  +RM+ Q       A    + +CS +G+LK G+++H   VR  Y    +  N
Sbjct: 405 FAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGN 464

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           ALITMY+RC  +  A+ LF        I+WN+M++         ++  LF EM + G+ P
Sbjct: 465 ALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILP 524

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + ++  +++  C+    ++ G+++   +      N     +  ++++  R+GK  EAK V
Sbjct: 525 DRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEV 584

Query: 470 FDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + M        + +L+AG  I G   + ++  E +   ++KP H     +LS
Sbjct: 585 MESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERL--FELKPQHDGTYVLLS 635



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 122/521 (23%), Positives = 211/521 (40%), Gaps = 85/521 (16%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDF--GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
           IR     Y S+L+ C     + +   R VH+  I +  +    + N L+ +Y K  +++ 
Sbjct: 7   IRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNY 66

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR LFD++ + D V+  T+I+AY++ G  K + ++F +    G+  +V  +N +      
Sbjct: 67  ARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSD-TPLGMRDSVF-YNAMITAYSH 124

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL-KLGKEIHGSAVRGCYGEYEN 346
             +    +EL   M+      D+      LGA + V    K  +++H + V+   G   +
Sbjct: 125 NHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTS 184

Query: 347 VRNALITMYSRC----------------------------------------KDLRHAYI 366
           V NALI+ Y +C                                         DL  A  
Sbjct: 185 VLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKE 244

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
               T++K  + WN+M+SGY H     E+  +FR+M  S ++ +  T  S++ +CA    
Sbjct: 245 FLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGC 304

Query: 427 LQHGKEFHCYILR---RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
            + GKE H Y L+       +  + + N+L+  Y + GKV  A+ +F+ M  RD V++  
Sbjct: 305 FRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNI 364

Query: 484 LIAGY--------------------------GIQGEGRV-----ALKLFEEMNKNQIKPD 512
           +++GY                           I G  ++     ALK F  M     +P 
Sbjct: 365 ILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPC 424

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
                  + +CS  G +  G +Q       YG    L     ++ +Y R G+++ A  + 
Sbjct: 425 DYAFAGAIISCSVLGSLKHG-RQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLF 483

Query: 573 TKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
             MP     + W  ++ A   H   G G  A E   E   E
Sbjct: 484 INMPCVDAIS-WNAMIAALGQH---GQGTQAIELFEEMLKE 520



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 132/310 (42%), Gaps = 48/310 (15%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A RG   +AFE F ++ ++    D    +F  +I  C        GK++HA  +  
Sbjct: 261 ISGYAHRGLYLEAFEMFRKMIMSKIQLDEF--TFTSVISVCANAGCFRLGKEMHAYFLKT 318

Query: 104 GLEKNP-VLVP---KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV-------- 151
                P V +P    L+TFY      + A  +      R  + WN+++S YV        
Sbjct: 319 VANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEA 378

Query: 152 -----------------------RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
                                  + GF  EAL  + +M+ +     ++ +   + +C  +
Sbjct: 379 KSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVL 438

Query: 189 MDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
             +  GR +H+  +   +E SL   NAL++MY + G VD A  LF  M   DA+SWN MI
Sbjct: 439 GSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMI 498

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           +A    G   +A +LF EM +EG+  + I++ T+   C   G           ++    Y
Sbjct: 499 AALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAG----------LVKEGRKY 548

Query: 308 LDSVATVIGL 317
            DS+  V G+
Sbjct: 549 FDSMHNVYGV 558



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 84/231 (36%), Gaps = 42/231 (18%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA  I  C  + +L  G+QLHA  +  G E +      L+T YA   + + A  L  N 
Sbjct: 427 AFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINM 486

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + WN +I+   + G   +A+ ++++M    I  D  ++ +V+ AC          
Sbjct: 487 PCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHA------- 539

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-----LERDAVSWNTMISAY 250
                                      G V   R+ FD M     +  D   +  +I   
Sbjct: 540 ---------------------------GLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLL 572

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
              G + EA ++   M+    E     W  +  GC   GN    +E   R+
Sbjct: 573 CRAGKFSEAKEV---MESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERL 620


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 199/634 (31%), Positives = 336/634 (52%), Gaps = 44/634 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C ++  L+ G++LHA  +  G E N +    L+  YA +   ++A  +      + 
Sbjct: 273 VLQVCAELGLLSLGRELHAALLKCGSELN-IQCNALLVMYAKYGRVDSALRVFGQIAEKD 331

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN ++S YV++ FYAEA+  + +M     + D+    S+  A G +  ++ GR  H+
Sbjct: 332 YISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHA 391

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             I       L V N L+ MY K G ++ + ++F+ M  RD +SW T+++ +A      E
Sbjct: 392 YAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSE 451

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A                                   LE++  ++ +   +DS+     L 
Sbjct: 452 A-----------------------------------LEMILELQKEGIMVDSMMIGSILE 476

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
            C  + ++ L K++H  A+R    +   + N LI +Y  C +  H+  LF+   +K I++
Sbjct: 477 TCCGLKSISLLKQVHCYAIRNGLLDLI-LENRLIDIYGECGEFDHSLNLFQRVEKKDIVS 535

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W SM++  T+      + FLF EM ++ ++P+ V + SIL   A +++L  GK+ H +++
Sbjct: 536 WTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLI 595

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           RR    E  ++ +SLV+MY+  G +  A  VF+    +D V +T++I   G+ G G+ A+
Sbjct: 596 RRNFPIEGPVV-SSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAI 654

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LF+ M +  + PDHV+ +A+L ACSHS LV EG+   + M S Y + P  EH+AC+VD+
Sbjct: 655 DLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDI 714

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GR+G   +A E I  MP  P SA+W  LLGAC++HRN G+   AA KLLE  P+N G Y
Sbjct: 715 LGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNY 774

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           +L++N++A  G W+   + RT M + G+RK P C+W++ GN    F   D  +  ++ I+
Sbjct: 775 ILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIH 834

Query: 679 PLLGGLTELM-KDAGYVVKEEF----CSEEEIVE 707
             L  +TE++ ++ GYV    F     SEEE ++
Sbjct: 835 LKLSEITEMLRREGGYVEDTRFVLHDTSEEEKID 868



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 151/563 (26%), Positives = 249/563 (44%), Gaps = 65/563 (11%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           +LK     G+L +A    T     A  H      +  ++      +A A+G+Q+HA A+ 
Sbjct: 32  SLKRLCKEGDLRQALRQLTTRAPPAREH------YGWVLDLVAARRAAAEGRQVHAHAVT 85

Query: 103 LGL---EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159
            G    + +  L  KLV  Y      ++A  L      R    WN L+  Y+  G   EA
Sbjct: 86  TGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEA 145

Query: 160 LCVYKQMQSRRIRG---DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNAL 215
           + VY  M++    G   D  T  SVLKACG   D   G  VH   +    + S  V NAL
Sbjct: 146 MRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANAL 205

Query: 216 VSMYGKFGQVDVARRLFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           + MY K G +D A R+F+ + +  RD  SWN+++S     G   EA  LF  MQ  G  +
Sbjct: 206 IGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPM 265

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           N                                   S  +V  L  C+ +G L LG+E+H
Sbjct: 266 N-----------------------------------SYTSVAVLQVCAELGLLSLGRELH 290

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
            + ++ C  E     NAL+ MY++   +  A  +F   AEK  I+WNSMLS Y       
Sbjct: 291 AALLK-CGSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYA 349

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+   F EM + G +P++  + S+      ++ L +G+EFH Y +++ +  + L + N+L
Sbjct: 350 EAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTD-LQVGNTL 408

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MY + G +  +  VF+ M  RD +++T+++A +        AL++  E+ K  I  D 
Sbjct: 409 MDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDS 468

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSI--YGIFPQLEHFAC---MVDLYGRAGLLNKA 568
           + + ++L  C        G K    +  +  Y I   L        ++D+YG  G  + +
Sbjct: 469 MMIGSILETCC-------GLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHS 521

Query: 569 KEIITKMPYTPTSAMWATLLGAC 591
             +  ++      + W +++  C
Sbjct: 522 LNLFQRVEKKDIVS-WTSMINCC 543



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 186/411 (45%), Gaps = 51/411 (12%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+   LV MYG+ G+VD ARRLF+ M  R                               
Sbjct: 96  FLATKLVFMYGRCGRVDDARRLFNGMPAR------------------------------- 124

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE---TYLDSVATVIGLGACSHVGAL 326
                V +WN + G  L +G+    + +   MR      +  D       L AC   G  
Sbjct: 125 ----TVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDG 180

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE--KSIITWNSMLS 384
           + G E+HG AV+    +   V NALI MY++C  L  A  +F+   +  + + +WNS++S
Sbjct: 181 RCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVS 240

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           G        E+  LFR M  +G   N  T  ++L +CA +  L  G+E H  +L+    +
Sbjct: 241 GCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCG--S 298

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
           E  +  N+L+ MYA+ G+V  A  VF  ++ +D +++ S+++ Y        A+  F EM
Sbjct: 299 ELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEM 358

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            ++  +PDH  +V++ SA  H   +  G ++F        +   L+    ++D+Y + G 
Sbjct: 359 LQHGFQPDHACVVSLSSALGHLSRLNNG-REFHAYAIKQRLHTDLQVGNTLMDMYIKCGS 417

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGAC--QIHRNTGIGEWAAEKLLETRPE 613
           +  + ++   M      + W T+L AC  Q  R++     A E +LE + E
Sbjct: 418 IECSAKVFESMGIRDHIS-WTTIL-ACFAQSSRHSE----ALEMILELQKE 462


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 195/635 (30%), Positives = 331/635 (52%), Gaps = 39/635 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A +   C  + A   G QLH  A+      + ++    +  YA     ++A + V N+
Sbjct: 241 TYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDA-WKVFNT 299

Query: 136 NIRYP-LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
               P   +N +I  Y R     +AL +++ +Q   +  D  +    L AC  +     G
Sbjct: 300 LPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEG 359

Query: 195 RVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             +H     C   +++ V N ++ MYGK G +  A  +FD M  RDAVSWN +I+A+   
Sbjct: 360 IQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQN 419

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
               +   LFV M    +E +  T+ ++                                
Sbjct: 420 EEIVKTLSLFVSMLRSTMEPDDFTYGSV-------------------------------- 447

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              + AC+   AL  G EIHG  V+   G    V +AL+ MY +C  L  A  +     E
Sbjct: 448 ---VKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEE 504

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K+ ++WNS++SG++    +E +   F +M   GV P+  T A++L +CA +A ++ GK+ 
Sbjct: 505 KTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQI 564

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  IL+  + ++ + + ++LV+MY++ G + +++ +F+   +RD VT++++I  Y   G 
Sbjct: 565 HAQILKLNLHSD-VYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGH 623

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  A+KLFEEM    +KP+H   ++VL AC+H G V +G   F+ M S YG+ P +EH++
Sbjct: 624 GEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYS 683

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVDL GR+  +N+A ++I  M +     +W TLL  C++  N  + E A   LL+  P+
Sbjct: 684 CMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQ 743

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           +S  YVL+AN+YA  G W ++AK+R+ M++  ++K PGC+W++  +    FLV D ++ +
Sbjct: 744 DSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPR 803

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           ++EIY     L + MK AGYV   +   +EE+ E+
Sbjct: 804 SEEIYEQTHLLVDEMKWAGYVPDIDSMLDEEVEEQ 838



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 149/593 (25%), Positives = 274/593 (46%), Gaps = 89/593 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE-- 133
           +F+HI+  C  +KAL  GKQ HA  I         +   LV FY   S  N A  + +  
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 134 --------NSNI---------------------RYPLPWNLLISLYVRDGFYAEALCVYK 164
                   N+ I                     R  + WN L+S Y+ +G   +++ ++ 
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M+S +I  D  T+  VLKAC  + D   G  VH   I    E  +   +ALV MY K  
Sbjct: 128 RMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++D A R+F +M ER+ V W+ +I+ Y     + E  +LF +M + G+ V          
Sbjct: 188 KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGV---------- 237

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                              +Q TY    A+V    +C+ + A KLG ++HG A++  +  
Sbjct: 238 -------------------SQSTY----ASV--FRSCAGLSAFKLGTQLHGHALKSDFAY 272

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              +  A + MY++C  +  A+ +F         ++N+++ GY   D   ++  +F+ + 
Sbjct: 273 DSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQ 332

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGK 462
           R+ +  + ++++  L  C+ +     G + H   ++  + FN  + + N++++MY + G 
Sbjct: 333 RTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFN--ICVANTILDMYGKCGA 390

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + EA ++FD M RRD V++ ++IA +    E    L LF  M ++ ++PD  T  +V+ A
Sbjct: 391 LVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKA 450

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQ----LEHF--ACMVDLYGRAGLLNKAKEIITKMP 576
           C+       GQ+       I+G   +    L+ F  + +VD+YG+ G+L +A++I  ++ 
Sbjct: 451 CA-------GQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLE 503

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE--TRPENSGYYVLI---ANM 624
              T+  W +++      + +   +    ++LE    P+N  Y  ++   ANM
Sbjct: 504 -EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANM 555



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 213/416 (51%), Gaps = 8/416 (1%)

Query: 176 FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
           FT+  +L+ C  +  ++ G+  H+  I      +++V N LV  Y K   ++ A ++FD+
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M  RD +SWNTMI  YA  G    A  LF  M E     +V++WN++    L  G  +  
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPER----DVVSWNSLLSCYLHNGVNRKS 122

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           +E+  RMR+ +   D     + L ACS +    LG ++H  A++  +       +AL+ M
Sbjct: 123 IEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM 182

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           YS+CK L  A+ +F+   E++++ W+++++GY   D   E   LF++M + G+  +  T 
Sbjct: 183 YSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTY 242

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           AS+   CA ++  + G + H + L ++ F    ++  + ++MYA+  ++ +A  VF+ + 
Sbjct: 243 ASVFRSCAGLSAFKLGTQLHGHAL-KSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLP 301

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
                +Y ++I GY  Q +G  AL++F+ + +  +  D +++   L+ACS     +EG  
Sbjct: 302 NPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEG-I 360

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           Q   +    G+   +     ++D+YG+ G L +A  I   M      + W  ++ A
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVS-WNAIIAA 415



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/469 (24%), Positives = 223/469 (47%), Gaps = 41/469 (8%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA E F  ++ T  S D +  S +  +  C  +K   +G QLH  A+  GL  N  +   
Sbjct: 323 KALEIFQSLQRTYLSFDEI--SLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANT 380

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           ++  Y        AC + ++   R  + WN +I+ + ++    + L ++  M    +  D
Sbjct: 381 ILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPD 440

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           +FTY SV+KAC     +++G  +H   + +      FV +ALV MYGK G +  A ++ D
Sbjct: 441 DFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHD 500

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           ++ E+  VSWN++IS ++S+   + A + F +M E GV  +  T+ T+            
Sbjct: 501 RLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATV------------ 548

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                                  L  C+++  ++LGK+IH   ++        + + L+ 
Sbjct: 549 -----------------------LDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVD 585

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MYS+C +++ + ++F+ T ++  +TW++M+  Y +    E++  LF EM    V+PN+  
Sbjct: 586 MYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTI 645

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S+L  CA +  +  G  +   +      + H+  ++ +V++  RS +V EA  + + M
Sbjct: 646 FISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESM 705

Query: 474 S-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
               D+V + +L++   +QG   VA K F  +   Q+ P   +   +L+
Sbjct: 706 HFEADDVIWRTLLSNCKMQGNVEVAEKAFNSL--LQLDPQDSSAYVLLA 752



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/587 (23%), Positives = 255/587 (43%), Gaps = 54/587 (9%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           K+ E F R+R     HD    +F+ ++  C  ++    G Q+H  AI +G E + V    
Sbjct: 121 KSIEIFVRMRSLKIPHDYA--TFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSA 178

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV  Y+     + A  +      R  + W+ +I+ YV++  + E L ++K M    +   
Sbjct: 179 LVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVS 238

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
             TY SV ++C  +     G  +H   + +   +   +  A + MY K  ++  A ++F+
Sbjct: 239 QSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFN 298

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
            +      S+N +I  YA +    +A ++F  +                           
Sbjct: 299 TLPNPPRQSYNAIIVGYARQDQGLKALEIFQSL--------------------------- 331

Query: 294 VLELLSRMRTQETYL--DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
                     Q TYL  D ++    L ACS +     G ++HG AV+   G    V N +
Sbjct: 332 ----------QRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTI 381

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           + MY +C  L  A  +F     +  ++WN++++ +   +   ++  LF  M RS +EP+ 
Sbjct: 382 LDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDD 441

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            T  S++  CA    L +G E H  I++  M      + ++LV+MY + G + EA+ + D
Sbjct: 442 FTYGSVVKACAGQQALNYGMEIHGRIVKSGM-GLDWFVGSALVDMYGKCGMLMEAEKIHD 500

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +  +  V++ S+I+G+  Q +   A + F +M +  + PD+ T   VL  C++    +E
Sbjct: 501 RLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMA-TIE 559

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
             KQ         +   +   + +VD+Y + G +  ++ +  K P       W+ ++ A 
Sbjct: 560 LGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTP-KRDYVTWSAMICAY 618

Query: 592 QIHRNTGIGEWAAE-----KLLETRPENSGYYVLIANMYAATGCWDK 633
             H   G GE A +     +LL  +P N   ++ +    A  G  DK
Sbjct: 619 AYH---GHGEQAIKLFEEMQLLNVKP-NHTIFISVLRACAHMGYVDK 661


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 192/623 (30%), Positives = 321/623 (51%), Gaps = 46/623 (7%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY--------PLP---- 142
           Q+H+  I  GL  N + + K++ F          C   E+ ++ Y        P P    
Sbjct: 53  QIHSQTIKTGLSSNHLFLTKVIIF----------CCTKESGDVYYARKVFDEIPQPSVFI 102

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV--HSC 200
           WN +I  Y R       + +YK M    I+ D FT+P +LK   + M + +G+V+  H+ 
Sbjct: 103 WNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAV 162

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           I    + +LFV    + ++   G V+ AR++FD     + V+WN ++S Y     ++E+ 
Sbjct: 163 IHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESK 222

Query: 261 QLFVEMQE--EGVEVNVITWNTIAGGCLRTGNFKG----VLELLSRMRTQETYLDSVATV 314
           +LF+EM++  E V  N +T   +   C +  +  G      + +     +   +   A +
Sbjct: 223 RLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALI 282

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR----NALITMYSRCKDLRHAYILFKM 370
               +C  +            A RG + E +        +++T ++    +  A   F  
Sbjct: 283 DMFASCGEM-----------DAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQ 331

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             E+  ++W +M+ GY  ++  +E   LFR+M  S V+P+  T+ SIL  CA +  L+ G
Sbjct: 332 MPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG 391

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           +    YI +  + N+   + N+L++MY + G V +AK +F+ M ++D+ T+T++I G   
Sbjct: 392 EWAKTYIDKNKIKND-TFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLAN 450

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G G  AL +F  M +  + PD +T + V+ AC+H GLV +G+  F  M   +GI P L 
Sbjct: 451 NGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLT 510

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL GRAG L +A E+I  MP  P S +W +LLGAC++H+N  + E AA ++LE 
Sbjct: 511 HYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILEL 570

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            PEN   YVL+ N+YAA   W  L  VR  M + G++KIPGC+ ++   +   F+  D S
Sbjct: 571 EPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKS 630

Query: 671 NVQAQEIYPLLGGLTELMKDAGY 693
           + Q++EIY  L  + + + +AGY
Sbjct: 631 HPQSKEIYAKLENMKQDLSNAGY 653


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 203/658 (30%), Positives = 329/658 (50%), Gaps = 76/658 (11%)

Query: 104 GLEKNPVLVPKLVTFYASFSL----YNNACF-LVENSNIRYPLPWNLLISLYVRDGFYAE 158
           G  +      +L+ F   F      Y    F  +EN+N      WN++I  Y++      
Sbjct: 5   GFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNC---FMWNMMIRAYIQTNSPHF 61

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKAC-------------------GEMMDVDFGRVVHS 199
           A  +YK M S  +  DN+TYP +++AC                   G   DV     + +
Sbjct: 62  AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 121

Query: 200 CIDAC----------HEWSLFVH---NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
           C   C          +E S+      N++++ Y + G V+ A+ ++ +M ER  ++ N+M
Sbjct: 122 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM 181

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           I  +  +GL  EA +LF EM E+    +++TW+ +     +   ++  +     M     
Sbjct: 182 IVLFGMRGLVVEACKLFDEMLEK----DMVTWSALIACFQQNEMYEEAIRTFVGMHKIGV 237

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL----- 361
            +D V  V  L AC+++  + +GK IH  +++     Y N++NALI MYS+C D+     
Sbjct: 238 MVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARK 297

Query: 362 --RHAYIL------------------------FKMTAEKSIITWNSMLSGYTHLDCAEES 395
               AY+L                        F    EK +++W+SM+SGY   D  +E+
Sbjct: 298 LFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDET 357

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             LF+EM  SG +P+  T+ S++  CAR+A L+ GK  H YI R  +   +++L  +L++
Sbjct: 358 LALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGL-TINVILGTTLID 416

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MY + G V  A  VF  M  +   T+ +LI G  + G    +L +F  M K  + P+ +T
Sbjct: 417 MYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEIT 476

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            + VL AC H GLV EGQ  F  M   + I P ++H+ CMVDL GRAG L +A+E++ +M
Sbjct: 477 FMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM 536

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P TP  A W  LLGAC+ H ++ +G     KL+E +P++ G++VL++N+YA+ G WD + 
Sbjct: 537 PMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVL 596

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           ++R  M    V KIPGC+ ++A  V   FL  D ++     I  +L  +   +K  GY
Sbjct: 597 EIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGY 654



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 22/258 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   +I  C ++ AL QGK +HA     GL  N +L   L+  Y        A  +    
Sbjct: 375 TLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM 434

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +    WN LI     +G    +L ++  M+   +  +  T+  VL AC  M  VD G+
Sbjct: 435 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ 494

Query: 196 VVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAY 250
             H      H+  +      +  +V + G+ G++  A  L ++M +  D  +W  ++ A 
Sbjct: 495 --HHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGAC 552

Query: 251 ASKG---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
              G   + +   +  +E+Q +    +V+  N  A      G +  VLE+   M      
Sbjct: 553 KKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYAS----KGKWDDVLEIRGMMTKHR-- 606

Query: 308 LDSVATVIGLGACSHVGA 325
                 V+ +  CS + A
Sbjct: 607 ------VLKIPGCSMIEA 618


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/536 (35%), Positives = 295/536 (55%), Gaps = 10/536 (1%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y +++ AC     ++ G+ VH+   A +    + + N L+ MY K G +  A+ LFD++ 
Sbjct: 66  YSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIP 125

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           ++D  SWNTMIS YA+ G  ++A +LF EM       +  +WN +  G +  G +   L+
Sbjct: 126 QKDLCSWNTMISGYANVGRIEQARKLFDEMPHR----DNFSWNAVISGYVSQGWYMEALD 181

Query: 297 LLSRMRTQETY-LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           L   M+  E+   +       L A + + +L+ GKEIHG  +R      E V  AL+ +Y
Sbjct: 182 LFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLY 241

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
            +C  L  A  +F   A+K I++W +M+         +E   LFR++  SGV PN  T A
Sbjct: 242 GKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFA 301

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
            +L  CA +A  Q GKE H Y + R  ++      ++LV +Y++ G    A+ VF+ M R
Sbjct: 302 GVLNACADLAAEQMGKEVHGY-MTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPR 360

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            D V++TSLI GY   G+  +AL+ FE + ++  KPD +T V VLSAC+H+GLV  G + 
Sbjct: 361 PDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEY 420

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  +   +G+    +H+AC++DL  R+G   +A+ II  MP  P   +WA+LLG C+IH 
Sbjct: 421 FHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHG 480

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  + E AA+ L E  PEN   Y+ ++N+YA  G W +  KVR  M + G+ K PG +W+
Sbjct: 481 NIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWI 540

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEE 708
           +       FLV DTS+ +  +I+  LG L++ MK+ GYV    F     EEE  E+
Sbjct: 541 EIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQ 596



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 138/560 (24%), Positives = 230/560 (41%), Gaps = 86/560 (15%)

Query: 14  SVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVV 73
           S SQ  K +    K    + H       E ++ F  +  L +A +   RI   +      
Sbjct: 9   SSSQFHKNLNLNPKDTTLSHHSEHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPR---- 64

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
              ++ +I  C + + L  GK++HA   A       V+  +L+  YA      +A  L +
Sbjct: 65  --LYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFD 122

Query: 134 NSNIRYPLPWNLLI-------------------------------SLYVRDGFYAEALCV 162
               +    WN +I                               S YV  G+Y EAL +
Sbjct: 123 EIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDL 182

Query: 163 YKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           ++ MQ       N FT  S L A   +  +  G+ +H   I +  E    V  AL+ +YG
Sbjct: 183 FRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYG 242

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G ++ AR +FD+M ++D VSW TMI      G  KE F LF ++   GV  N  T   
Sbjct: 243 KCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYT--- 299

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                     F GVL                       AC+ + A ++GKE+HG   R  
Sbjct: 300 ----------FAGVLN----------------------ACADLAAEQMGKEVHGYMTRVG 327

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           Y  +    +AL+ +YS+C +   A  +F       +++W S++ GY      + +   F 
Sbjct: 328 YDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFE 387

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            + RSG +P+ +T   +L  C     +  G E+   +  +         +  ++++ ARS
Sbjct: 388 SLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARS 447

Query: 461 GKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGE----GRVALKLFEEMNKNQIKPDH-V 514
           G+  EA+++ D M  + D+  + SL+ G  I G      R A  LFE      ++P++  
Sbjct: 448 GRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFE------LEPENPA 501

Query: 515 TMVAVLSACSHSGLVVEGQK 534
           T + + +  +++GL  E  K
Sbjct: 502 TYITLSNIYANAGLWTEETK 521


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 194/535 (36%), Positives = 292/535 (54%), Gaps = 50/535 (9%)

Query: 179 PSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           P V+KACG+++D   G+ +H  +     EW +FV  +LV MY +FG V  AR+LFD M  
Sbjct: 1   PPVVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           RD  S                                   WN +  G  + GN    L++
Sbjct: 58  RDRGS-----------------------------------WNAMISGYCQNGNAAEALDI 82

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG-EYE-NVRNALITMY 355
              MR +   +D++     L  C+ VG +  GK IH   ++  +G E+E  V NALI MY
Sbjct: 83  ADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIK--HGLEFELFVSNALINMY 140

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES--AFLFREMFRSGVEPNYVT 413
           ++   L HA  +F +   K +++WN++++GY     A E+   +L  E     + PN  T
Sbjct: 141 AKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEE-IIPNQGT 198

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             SILP  + V  LQ G   H  +++  ++++ + +   L++MY + GK+ +A S+F  +
Sbjct: 199 WVSILPAYSHVGALQQGMRIHGQVIKNCLYSD-VFVGTCLIDMYGKCGKLDDAISLFYQV 257

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            R++ V + ++I+ YG+ G+G  AL+LF EM   ++KPDH+T V++LSACSHSGLV + Q
Sbjct: 258 PRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQ 317

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
             F  M   YGI P L+H+ CMVDL+GRAG L  A   I KMP  P ++ W  LL AC+I
Sbjct: 318 WCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRI 377

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           H N  +G+ A+E+L E   EN GYYVL++N+YA  G W+ +  VR+  RD G+RK PG +
Sbjct: 378 HGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWS 437

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
            +   N    F   + ++ + +EIY  L  LT  +K  GYV   +FC   + VEE
Sbjct: 438 SIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYV--PDFCFVLQDVEE 490



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 222/491 (45%), Gaps = 87/491 (17%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  CG    L  GK++H   + LG E +  +   LV  Y+ F L  +A  L ++   R 
Sbjct: 3   VVKACGD---LLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH- 198
              WN +IS Y ++G  AEAL +  +M+   ++ D  T  SVL  C ++ D+  G+++H 
Sbjct: 60  RGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHL 119

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             I    E+ LFV NAL++MY KFG +  A+++F  +L +D VSWNT+I+ YA  GL  E
Sbjct: 120 YVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASE 178

Query: 259 AFQLFVEMQE-EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           A ++++ M+E E +  N  TW +I                                   L
Sbjct: 179 AIEVYLLMEEHEEIIPNQGTWVSI-----------------------------------L 203

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            A SHVGAL+ G  IHG  ++ C      V   LI MY +C  L  A  LF     K+ +
Sbjct: 204 PAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSV 263

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            WN+M+S Y      E++  LFREM    V+P+++T  S+L  C                
Sbjct: 264 PWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSAC---------------- 307

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-----YTSLIAGYGIQG 492
                               + SG V +A+  F++M     +      Y  ++  +G  G
Sbjct: 308 --------------------SHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAG 347

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
           E  +A    ++M    I+PD     A+L+AC   G +  G+   ER+  +      + ++
Sbjct: 348 ELEMAFNFIKKM---PIQPDASAWGALLNACRIHGNIELGKHASERLFEVDS--ENVGYY 402

Query: 553 ACMVDLYGRAG 563
             + ++Y   G
Sbjct: 403 VLLSNIYANVG 413



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 5/248 (2%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   GN ++A +    +R+     D +  + A ++  C +V  +  GK +H   I  
Sbjct: 67  ISGYCQNGNAAEALDIADEMRLEGVKMDAI--TVASVLPVCAQVGDILSGKLIHLYVIKH 124

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE    +   L+  YA F    +A   V    I+  + WN LI+ Y ++G  +EA+ VY
Sbjct: 125 GLEFELFVSNALINMYAKFGSLGHA-QKVFGLLIKDVVSWNTLITGYAQNGLASEAIEVY 183

Query: 164 KQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGK 221
             M+    I  +  T+ S+L A   +  +  G  +H   I  C    +FV   L+ MYGK
Sbjct: 184 LLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGK 243

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G++D A  LF ++  +++V WN MIS Y   G  ++A +LF EM+ E V+ + IT+ ++
Sbjct: 244 CGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSL 303

Query: 282 AGGCLRTG 289
              C  +G
Sbjct: 304 LSACSHSG 311


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 216/705 (30%), Positives = 358/705 (50%), Gaps = 62/705 (8%)

Query: 6   SRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRI 65
           +R++ +G+    +EK     W   I+  H+   N LE L  F     +  A   +T +  
Sbjct: 199 ARVLFDGI---MMEKEDTVSWNSIIS-AHVAEGNCLEALSLFRRMQEVGVASNTYTFV-- 252

Query: 66  TAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125
            AA   V   SF  +            G  +H   +      +  +   L+  YA     
Sbjct: 253 -AALQGVEDPSFVKL------------GMGIHGAVLKSNHFADVYVANALIAMYAKCGRM 299

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
            +A  + E+   R  + WN L+S  V++  Y++AL  ++ MQ+   + D  +  +++ A 
Sbjct: 300 EDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAAS 359

Query: 186 GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
           G   ++  G+ VH+  I    + ++ + N LV MY K   V      F+ M E+D +SW 
Sbjct: 360 GRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWT 419

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           T+I+ YA      EA  LF ++Q +G++V+ +    + G  LR                 
Sbjct: 420 TIIAGYAQNEFHLEAINLFRKVQVKGMDVDPM----MIGSVLR----------------- 458

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                         ACS + +    +EIHG   +    +   ++NA++ +Y     + +A
Sbjct: 459 --------------ACSGLKSRNFIREIHGYVFKRDLADIM-LQNAIVNVYGEVGHIDYA 503

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
              F+    K I++W SM++   H     E+  LF  + ++ ++P+ + I S L   A +
Sbjct: 504 RRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANL 563

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
           ++L+ GKE H +++R+  F E  +  +SLV+MYA  G V  ++ +F  + +RD + +TS+
Sbjct: 564 SSLKKGKEIHGFLIRKGFFLEGPIA-SSLVDMYACCGTVENSRKMFHSVKQRDLILWTSM 622

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           I   G+ G G  A+ LF++M    + PDH+T +A+L ACSHSGL+VEG++ FE M   Y 
Sbjct: 623 INANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQ 682

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           + P  EH+ACMVDL  R+  L +A   +  MP  P+S +W  LLGAC IH N  +GE AA
Sbjct: 683 LEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAA 742

Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
           ++LL++  ENSG Y LI+N++AA G W+ + +VR  M+  G++K PGC+W++  N    F
Sbjct: 743 KELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTF 802

Query: 665 LVDDTSNVQAQEIYPLLGGLTELM-KDAGYVVKEEF----CSEEE 704
           +  D S+ Q  +IY  L   T+L+ K  GY+ + +F     SEEE
Sbjct: 803 MARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEE 847



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 156/555 (28%), Positives = 259/555 (46%), Gaps = 63/555 (11%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDS---FAH--IIFCCGKVKALAQGKQLHACAIALG 104
           +G L  AF++ T +    ++H +   S    AH  ++  C   KAL QG+QLHA  + L 
Sbjct: 21  KGTLKPAFQSLTLL----STHPLATPSRLEHAHSLLLDLCVAAKALPQGQQLHA--LLLK 74

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  L  KLV  Y       +A  + +  + R    WN L+  +V  G Y EA+ +YK
Sbjct: 75  SHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYK 134

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFG 223
            M+   +  D  T+PSVLKACG + +   G  +H     C +   +FV NAL++MYGK G
Sbjct: 135 DMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCG 194

Query: 224 QVDVARRLFDK-MLER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            +  AR LFD  M+E+ D VSWN+                             +I+ +  
Sbjct: 195 DLGGARVLFDGIMMEKEDTVSWNS-----------------------------IISAHVA 225

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
            G CL        L L  RM+      ++   V  L        +KLG  IHG+ ++  +
Sbjct: 226 EGNCLEA------LSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNH 279

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V NALI MY++C  +  A  +F+    +  ++WN++LSG    +   ++   FR+
Sbjct: 280 FADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRD 339

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG +P+ V++ +++    R  NL  GKE H Y +R  + + ++ + N+LV+MYA+  
Sbjct: 340 MQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGL-DSNMQIGNTLVDMYAKCC 398

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            V      F+ M  +D +++T++IAGY        A+ LF ++    +  D + + +VL 
Sbjct: 399 CVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLR 458

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM-----VDLYGRAGLLNKAKEIITKMP 576
           ACS       G K    +  I+G   + +    M     V++YG  G ++ A+     + 
Sbjct: 459 ACS-------GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESI- 510

Query: 577 YTPTSAMWATLLGAC 591
            +     W +++  C
Sbjct: 511 RSKDIVSWTSMITCC 525


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 210/679 (30%), Positives = 330/679 (48%), Gaps = 76/679 (11%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           CCG +  L  G+Q+H   +  G   N  +   L+  Y      + A  ++E    +  + 
Sbjct: 144 CCG-LGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVS 202

Query: 143 WNLLISLYVRDGFYAEALCV-----------------------------------YKQMQ 167
           WN +I+  V +G   EAL +                                   + +M 
Sbjct: 203 WNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMV 262

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQV 225
              +  D  T  SVL AC  M  +  G+ +H  I   HE   + FV NALV MY + G +
Sbjct: 263 GAGVAPDARTLASVLPACSRMKWLFVGKELHGYI-VRHELFSNGFVANALVGMYRRCGDM 321

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A ++F K   + A S+NTMI  Y   G   +A +LF +M++EGVE + I+WN +  G 
Sbjct: 322 KSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGH 381

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
           +    F   L L   +  +    DS      L   + +  ++ GKEIH  A+        
Sbjct: 382 VDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNS 441

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL---------------D 390
            V  AL+ MY +C D+  A + F   +E+   TWN+++SGY                  D
Sbjct: 442 FVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQIGKIRELVERMKSD 501

Query: 391 CAEESAF--------------------LFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             E + +                    LF EM  S + P+  T+  IL  C+++A +  G
Sbjct: 502 GFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRG 561

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K+ H Y +R A ++    +  +LV+MYA+ G +     V++ +S  + V + +++  Y +
Sbjct: 562 KQVHAYSIR-AGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAM 620

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G G   + +F  M  ++++PDHVT ++VLS+C H+G +  G + F  M + Y I P L+
Sbjct: 621 HGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECFYLMET-YNITPTLK 679

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL  RAG L++A ++I  MP    S  W+ LLG C IH+   +GE AAEKL+E 
Sbjct: 680 HYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKEVALGEIAAEKLIEL 739

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P N+G YVL+AN+YA+ G W  LAK R  M D G++K PGC+W++  +    FL  D S
Sbjct: 740 EPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSWIEDRDGVHIFLASDKS 799

Query: 671 NVQAQEIYPLLGGLTELMK 689
           + + +EIY +L  LT+ ++
Sbjct: 800 HQRVEEIYFMLDNLTKFIR 818



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 156/598 (26%), Positives = 274/598 (45%), Gaps = 78/598 (13%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
            +L  GKQLH+ +I  G   +  +  KL+  Y+  S + +A  + +   ++    W  ++
Sbjct: 45  NSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVL 104

Query: 148 SLYVRDGFYAEALCVYKQMQSRRI--RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
            L++  G + +   ++++     +  + D F +P VL  C  + D++ GR VH  +   H
Sbjct: 105 RLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLK-H 163

Query: 206 EW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
            +  +++V NAL+ MYGK G +D A+++ + M ++D VSWN++I+A  + G+  EA  L 
Sbjct: 164 GFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLL 223

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
             M    +E NV+TW+ + GG          +EL +RM       D+      L ACS +
Sbjct: 224 ENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRM 283

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA----------- 372
             L +GKE+HG  VR        V NAL+ MY RC D++ A+ +F   A           
Sbjct: 284 KWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMI 343

Query: 373 ------------------------EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
                                   E+  I+WN M+SG+      +++  LFR++   G+E
Sbjct: 344 VGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIE 403

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+  T+ SIL   A +  ++ GKE H   + + +   +  +  +LVEMY +   +  A+ 
Sbjct: 404 PDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGL-QSNSFVGGALVEMYCKCNDIIAAQM 462

Query: 469 VFDLMSRRDEVTYTSLIAGYG--------------IQGEG-------------------- 494
            FD +S RD  T+ +LI+GY               ++ +G                    
Sbjct: 463 AFDEISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQ 522

Query: 495 -RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
             +A++LF EM  + ++PD  T+  +L+ACS    +  G KQ    +   G        A
Sbjct: 523 YDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRG-KQVHAYSIRAGYDSDAHIGA 581

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
            +VD+Y + G +    ++  K+   P       +L A  +H +   G     ++L++R
Sbjct: 582 TLVDMYAKCGSIKHCYQVYNKIS-NPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSR 638



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 220/477 (46%), Gaps = 42/477 (8%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           ++ E F R+     + D    + A ++  C ++K L  GK+LH   +   L  N  +   
Sbjct: 253 ESVELFARMVGAGVAPDA--RTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANA 310

Query: 115 LVTFYAS----------FSLYNNACF---------LVENSNI----------------RY 139
           LV  Y            FS +   C           +EN N+                R 
Sbjct: 311 LVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERD 370

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN +IS +V +  + +AL +++ +    I  D+FT  S+L    +M  +  G+ +HS
Sbjct: 371 RISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHS 430

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             I    + + FV  ALV MY K   +  A+  FD++ ERD  +WN +IS YA      +
Sbjct: 431 IAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQIGK 490

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
             +L   M+ +G E NV TWN+I  G +    +   ++L + M+      D     I L 
Sbjct: 491 IRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILA 550

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           ACS +  +  GK++H  ++R  Y    ++   L+ MY++C  ++H Y ++   +  +++ 
Sbjct: 551 ACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVC 610

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC-YI 437
            N+ML+ Y      EE   +FR M  S V P++VT  S+L  C    +++ G E  C Y+
Sbjct: 611 HNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYE--CFYL 668

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE 493
           +        L  +  +V++ +R+GK+ EA  +   M    D VT+++L+ G  I  E
Sbjct: 669 METYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKE 725



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 164/382 (42%), Gaps = 73/382 (19%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           TY ++L++   +     G+ +HS  I        FV   L+ MY      + A  +FDKM
Sbjct: 36  TYSTILQSSNSLT---LGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKM 92

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             ++  SW  ++  + + GL+ + F LF E   +G+                        
Sbjct: 93  TLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEK--------------------- 131

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                       LD     + L  C  +G L+LG+++HG  ++  +     V NALI MY
Sbjct: 132 ------------LDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMY 179

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSG-------YTHLDCAE--------------- 393
            +C  L  A  + +   +K  ++WNS+++        Y  LD  E               
Sbjct: 180 GKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWS 239

Query: 394 -------------ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
                        ES  LF  M  +GV P+  T+AS+LP C+R+  L  GKE H YI+R 
Sbjct: 240 AVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRH 299

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            +F+   +  N+LV MY R G +  A  +F   +R+   +Y ++I GY   G    A +L
Sbjct: 300 ELFSNGFVA-NALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKEL 358

Query: 501 FEEMNKNQIKPDHVTMVAVLSA 522
           F +M +  ++ D ++   ++S 
Sbjct: 359 FYQMEQEGVERDRISWNCMISG 380


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 322/601 (53%), Gaps = 44/601 (7%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           +R  + +N +I+ +  +     A+ ++ +M+    + DNFT+ SVL     + D D  + 
Sbjct: 110 MRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVAD-DEKQC 168

Query: 197 VH---SCIDACHEWSLFVHNALVSMYGKFGQ----VDVARRLFDKMLERDAVSWNTMISA 249
           V    + + +   +   V NALVS+Y K       +  AR++FD++LE+D  SW TM++ 
Sbjct: 169 VQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTG 228

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           Y   G +    +L   M +    + ++ +N +  G +  G ++  LE++ RM +    LD
Sbjct: 229 YVKNGYFDLGEELLEGMDDN---MKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELD 285

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
                  + AC+  G L+LGK++H   +R     + +  N+L+++Y +C     A  +F+
Sbjct: 286 EFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF-HFDNSLVSLYYKCGKFDEARAIFE 344

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF-------------------------- 403
               K +++WN++LSGY       E+  +F+EM                           
Sbjct: 345 KMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKL 404

Query: 404 -----RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
                R G EP     +  +  CA +    +G+++H  +L+   F+  L   N+L+ MYA
Sbjct: 405 FSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIG-FDSSLSAGNALITMYA 463

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           + G V EA+ VF  M   D V++ +LIA  G  G G  A+ ++EEM K  I+PD +T++ 
Sbjct: 464 KCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLT 523

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           VL+ACSH+GLV +G+K F+ M ++Y I P  +H+A ++DL  R+G  + A+ +I  +P+ 
Sbjct: 524 VLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFK 583

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638
           PT+ +W  LL  C++H N  +G  AA+KL    PE+ G Y+L++NM+AATG W+++A+VR
Sbjct: 584 PTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVR 643

Query: 639 TCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE 698
             MRD GV+K   C+W++       FLVDDTS+ +A+ +Y  L  L + M+  GYV    
Sbjct: 644 KLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTS 703

Query: 699 F 699
           F
Sbjct: 704 F 704



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 200/474 (42%), Gaps = 82/474 (17%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L+ +Y K  +++ AR+LFD++ E D ++  TM+S Y + G    A  +F     E   
Sbjct: 53  NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVF-----EKAP 107

Query: 273 V---NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG-ALKL 328
           V   + + +N +  G     +    + L  +M+ +    D+      L   + V    K 
Sbjct: 108 VCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQ 167

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKD----LRHAYILFKMTAEKS--------- 375
             + H +A++   G   +V NAL+++YS+C      L  A  +F    EK          
Sbjct: 168 CVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMT 227

Query: 376 -----------------------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
                                  ++ +N+M+SGY +    +E+  + R M  SG+E +  
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T  S++  CA    LQ GK+ H Y+LRR  F+ H    NSLV +Y + GK  EA+++F+ 
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD--NSLVSLYYKCGKFDEARAIFEK 345

Query: 473 MSRRDEVTYTSLIAGYGIQGE-------------------------------GRVALKLF 501
           M  +D V++ +L++GY   G                                G   LKLF
Sbjct: 346 MPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLF 405

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M +   +P        + +C+  G    GQ+   ++  I G    L     ++ +Y +
Sbjct: 406 SCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKI-GFDSSLSAGNALITMYAK 464

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET--RPE 613
            G++ +A+++   MP    S  W  L+ A   H +        E++L+   RP+
Sbjct: 465 CGVVEEARQVFRTMP-CLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 151/376 (40%), Gaps = 72/376 (19%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAI 101
           +  +  RG   +A E   R+     S  + LD F +  +I  C     L  GKQ+HA  +
Sbjct: 258 ISGYVNRGFYQEALEMVRRM----VSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
               + +      LV+ Y     ++ A  + E    +  + WN L+S YV  G   EA  
Sbjct: 314 RRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372

Query: 162 VYKQMQSRRIRG---------------DNFTYPSVLKACG-EMMDVDFGRVVHSC----- 200
           ++K+M+ + I                 +     S +K  G E  D  F   + SC     
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 201 -----------IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
                      +    + SL   NAL++MY K G V+ AR++F  M   D+VSWN +I+A
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAA 492

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
               G   EA  ++ EM ++G+  + IT  T+   C   G       L+ + R    Y D
Sbjct: 493 LGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAG-------LVDQGR---KYFD 542

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           S+ TV  +      GA    + I      G + + E+V  +L                FK
Sbjct: 543 SMETVYRIPP----GADHYARLIDLLCRSGKFSDAESVIESLP---------------FK 583

Query: 370 MTAEKSIITWNSMLSG 385
            TAE     W ++LSG
Sbjct: 584 PTAE----IWEALLSG 595



 Score = 46.2 bits (108), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 39/151 (25%)

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-- 475
           LPL  R  +LQ  +  H  I+    F     + N L+++Y +S ++  A+ +FD +S   
Sbjct: 23  LPL--RRTSLQLARAVHGNIITFG-FQPRAHILNRLIDVYCKSSELNYARQLFDEISEPD 79

Query: 476 -------------------------------RDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
                                          RD V Y ++I G+    +G  A+ LF +M
Sbjct: 80  KIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKM 139

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
                KPD+ T  +VL+  +   LV + +KQ
Sbjct: 140 KHEGFKPDNFTFASVLAGLA---LVADDEKQ 167


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 204/614 (33%), Positives = 318/614 (51%), Gaps = 50/614 (8%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS-----LYNNA 128
           L  F+H +  C   K+++  KQ+H  AI       P L+PKL+   +S S      Y  +
Sbjct: 6   LHLFSHSLNSC---KSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRS 62

Query: 129 CFLVENSNIRYPLPW-NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
             L  + + ++ L   N +I    R+      +    +M    +  D FT P VLKA   
Sbjct: 63  ILLTHSHDAQFCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALAL 122

Query: 188 MMDVDFGRVVH--SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
           +  +  G+ +H  S       ++++V N L+ +Y   G +   +++FD+   RD VSW T
Sbjct: 123 IQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTT 182

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           +I A+   GL+  A + F+EM +                               R+R   
Sbjct: 183 LIQAFTKAGLYSRAVEAFMEMCD------------------------------LRLRA-- 210

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN--VRNALITMYSRCKDLRH 363
              D    V+ L ACS++G L LG+++H S +R       +  V NAL+ MY +C DL  
Sbjct: 211 ---DGRTLVVVLSACSNLGDLNLGQKVH-SYIRHYIDMKADVFVGNALLDMYLKCDDLNS 266

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           AY +F     K+++TWN+M+SG  +     E+   FR M   GV+P+ VT+  +L  CA 
Sbjct: 267 AYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCAN 326

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           +  L+ GK  H Y+ R  +  +   + N+L++MYA+ G + EA  VF+ M RRD  +YT+
Sbjct: 327 LGVLEIGKWVHAYMRRNHILADK-FVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTA 385

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +I G  + GE   A ++F EM +  I+P+ VT + +L ACSH GLV EG+K F +M+  Y
Sbjct: 386 MIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKY 445

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
            + PQ EH+ CM+DL GRAGL+ +A+EII KM   P       LLGAC+IH N  IGE  
Sbjct: 446 KLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESV 505

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
            +KL E  P+  G Y+L+ N+Y++   W    K+R  M++  +RK PGC+ ++   V   
Sbjct: 506 MQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHE 565

Query: 664 FLVDDTSNVQAQEI 677
           F   D S+ +++ I
Sbjct: 566 FRKGDKSHPRSKVI 579


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 292/563 (51%), Gaps = 42/563 (7%)

Query: 138 RYPLP---WNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVD 192
           R PL    +N+L+  ++  G   +AL ++ +M   +     D  T    LK+C  M  +D
Sbjct: 78  RPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALD 137

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            GR V +  +        FV ++L+ MY   G V  AR +FD                  
Sbjct: 138 VGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAA---------------- 181

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                          +E GV    + WN I    L+ G++  V+E+   M       D V
Sbjct: 182 ---------------EESGV----VMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEV 222

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
             V  + AC  +G  KLGK + G            +  AL+ MY++C ++  A  LF   
Sbjct: 223 TLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGM 282

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             + ++ W++M+SGYT  D   E+  LF EM  + VEPN VT+ S+L  CA +  L+ GK
Sbjct: 283 QSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGK 342

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
             H Y+ RR   +   +L  +LV+ YA+ G + +A   F+ M  ++  T+T+LI G    
Sbjct: 343 WVHSYV-RRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATN 401

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G GR AL+LF  M +  I+P  VT + VL ACSHS LV EG++ F+ M   YGI P++EH
Sbjct: 402 GRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEH 461

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + CMVDL GRAGL+++A + I  MP  P + +W  LL +C +HRN GIGE A ++++   
Sbjct: 462 YGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLN 521

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P +SG YVL++N+YA+ G W   A VR  M+D G+ K PGC+ ++   V   F  +D+ +
Sbjct: 522 PSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDH 581

Query: 672 VQAQEIYPLLGGLTELMKDAGYV 694
            + +EIY  +  +   +K AGYV
Sbjct: 582 PELREIYQKVEEMIGRIKVAGYV 604



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 202/473 (42%), Gaps = 46/473 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ F   G+   A   F  +   A++      + A  +  C ++ AL  G+ + A A+  
Sbjct: 90  MRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKR 149

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL  +  ++  L+  YAS      A  + + +     + WN +++ Y+++G + E + ++
Sbjct: 150 GLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMF 209

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVH----NALVSMY 219
           K M    +  D  T  SV+ ACG + D   G+ V   +D   E  L  +     AL+ MY
Sbjct: 210 KGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVD---EEGLARNPKLVTALMDMY 266

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G++  ARRLFD M  RD V+W+ MIS Y      +EA  LF EMQ   VE N +T  
Sbjct: 267 AKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMV 326

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           ++                                   L AC+ +GAL+ GK +H    R 
Sbjct: 327 SV-----------------------------------LSACAVLGALETGKWVHSYVRRK 351

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                  +  AL+  Y++C  +  A   F+    K+  TW +++ G        E+  LF
Sbjct: 352 RLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELF 411

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
             M  +G+EP  VT   +L  C+    ++ G+     + R       +  +  +V++  R
Sbjct: 412 SSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGR 471

Query: 460 SGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQ---GEGRVALKLFEEMNKNQ 508
           +G V EA      M    + V + +L++   +    G G  ALK    +N + 
Sbjct: 472 AGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSH 524


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 196/646 (30%), Positives = 338/646 (52%), Gaps = 49/646 (7%)

Query: 58  EAFTRIRITAASHDVVLDSFAHIIF------CCGKVKALAQGKQLHACAIALGLEKNPVL 111
           EAF   R    S    L    H+ F      C   V   A G Q+HA A+ LG + NP L
Sbjct: 128 EAFKLFRQMCRSSSCTLPD--HVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNPFL 184

Query: 112 VPK--LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
                L+  Y      + AC L E    +  + +N LI+ Y +DG Y E++ ++ +M+  
Sbjct: 185 TVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQS 244

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
             +  +FT+  VLKA   + D   G+ +H+  +         V N ++  Y K  +V   
Sbjct: 245 GHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLET 304

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           R LFD+M E D VS+N +IS+Y+    ++ +   F EMQ  G +                
Sbjct: 305 RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR-------------- 350

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
            NF                    AT++ + A  ++ +L++G+++H  A+        +V 
Sbjct: 351 -NFP------------------FATMLSIAA--NLSSLQMGRQLHCQALLATADSILHVG 389

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N+L+ MY++C+    A ++FK   +++ ++W +++SGY           LF +M  S + 
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLR 449

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            +  T A++L   A  A+L  GK+ H +I+R     E++   + LV+MYA+ G + +A  
Sbjct: 450 ADQSTFATVLKASASFASLLLGKQLHAFIIRSGNL-ENVFSGSGLVDMYAKCGSIKDAVQ 508

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VF+ M  R+ V++ +LI+ +   G+G  A+  F +M ++ ++PD V+++ VL+ACSH G 
Sbjct: 509 VFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGF 568

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           V +G + F+ M+ IYGI P+ +H+ACM+DL GR G   +A++++ +MP+ P   MW+++L
Sbjct: 569 VEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVL 628

Query: 589 GACQIHRNTGIGEWAAEKLLE-TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
            AC+IH+N  + E AAEKL    +  ++  YV ++N+YAA G W+K+  V+  MR+ G++
Sbjct: 629 NACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIK 688

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           K+P  +WV+  +    F  +D ++    EI   +  LT  ++  GY
Sbjct: 689 KVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGY 734



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 240/502 (47%), Gaps = 46/502 (9%)

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN V    +++ +      ++A  L +    R  + W +L+  Y R+  + EA  +++QM
Sbjct: 77  KNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136

Query: 167 --QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF--VHNALVSMYGK 221
              S     D+ T+ ++L  C + +  +    VH+  +    + + F  V N L+  Y +
Sbjct: 137 CRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCE 196

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
             ++D+A  LF+++ E+D+V++NT+I+ Y   GL+ E+  LF++M++ G + +  T    
Sbjct: 197 VRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFT---- 252

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                    F GVL+                 V+GL          LG+++H  +V   +
Sbjct: 253 ---------FSGVLK----------------AVVGLHD------FALGQQLHALSVTTGF 281

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               +V N ++  YS+   +    +LF    E   +++N ++S Y+  D  E S   FRE
Sbjct: 282 SRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFRE 341

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   G +      A++L + A +++LQ G++ HC  L  A  +  L + NSLV+MYA+  
Sbjct: 342 MQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL-LATADSILHVGNSLVDMYAKCE 400

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
              EA+ +F  + +R  V++T+LI+GY  +G     LKLF +M  + ++ D  T   VL 
Sbjct: 401 MFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLK 460

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           A +    ++ G KQ        G    +   + +VD+Y + G +  A ++  +MP    +
Sbjct: 461 ASASFASLLLG-KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNA 518

Query: 582 AMWATLLGACQIHRNTGIGEWA 603
             W  L+ A   H + G GE A
Sbjct: 519 VSWNALISA---HADNGDGEAA 537



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 171/385 (44%), Gaps = 12/385 (3%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N +V    + GQV  AR+++D+M  ++ VS NTMIS +   G    A  LF  M +    
Sbjct: 52  NFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDR--- 108

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIGLGACSHVGALKLGK 330
             V+TW  + G   R  +F    +L  +M   +  T  D V     L  C+         
Sbjct: 109 -TVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVG 167

Query: 331 EIHGSAVRGCY--GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           ++H  AV+  +    +  V N L+  Y   + L  A +LF+   EK  +T+N++++GY  
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
                ES  LF +M +SG +P+  T + +L     + +   G++ H   +    F+    
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTG-FSRDAS 286

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           + N +++ Y++  +V E + +FD M   D V+Y  +I+ Y    +   +L  F EM    
Sbjct: 287 VGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMG 346

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNK 567
               +     +LS  ++   +  G++      ++      + H    +VD+Y +  +  +
Sbjct: 347 FDRRNFPFATMLSIAANLSSLQMGRQL--HCQALLATADSILHVGNSLVDMYAKCEMFEE 404

Query: 568 AKEIITKMPYTPTSAMWATLLGACQ 592
           A+ I   +P   T +  A + G  Q
Sbjct: 405 AELIFKSLPQRTTVSWTALISGYVQ 429



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 8/228 (3%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +  +G      + FT++R +    D    +FA ++       +L  GKQLHA  I  G  
Sbjct: 427 YVQKGLHGAGLKLFTKMRGSNLRAD--QSTFATVLKASASFASLLLGKQLHAFIIRSGNL 484

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           +N      LV  YA      +A  + E    R  + WN LIS +  +G    A+  + +M
Sbjct: 485 ENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKM 544

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQ 224
               ++ D+ +   VL AC     V+ G      +   +  +    +   ++ + G+ G+
Sbjct: 545 IESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGR 604

Query: 225 VDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQE 268
              A +L D+M  E D + W+++++A   + ++ L + A +    M++
Sbjct: 605 FAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEK 652


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 208/676 (30%), Positives = 354/676 (52%), Gaps = 71/676 (10%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL-P 142
           C   K+L Q K +H   + +GL  + VL   L+  Y +   + +A  + EN +IR  +  
Sbjct: 13  CTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENIDIRSDVYI 72

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRI-RGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           WN L+S Y ++  + + L V+K++ +  I   D+FTYP+V+KA G +     GR++H+ +
Sbjct: 73  WNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRMIHTVV 132

Query: 202 -DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM------------------------- 235
             + H   + V ++LV MY KF   + + ++FD+M                         
Sbjct: 133 VKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKAL 192

Query: 236 ----------LERDAVSWNTMISAYAS-----------KGLWKEAFQL------------ 262
                      E ++VS    ISA +            +   K+ F+L            
Sbjct: 193 ELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMY 252

Query: 263 ----FVEMQEEGVEV----NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               F+EM  E  +     +++ WN++  G +  G+ K  +ELL+RM  + T        
Sbjct: 253 GRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLT 312

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L ACS    L  GK +HG  +R        +  +LI +Y +C +++ A  +F  T + 
Sbjct: 313 SILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKD 372

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            + +WN M+SGY  +    ++  ++ +M   GV+P+ VT  S+L  C+++A L+ GK+ H
Sbjct: 373 VVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIH 432

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             I    +  + LLL ++L++MY++ G V EA  +F+ + ++D V++T +I+ YG  G+ 
Sbjct: 433 LSISESRLETDELLL-SALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQP 491

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           R AL  F+EM K  +KPD VT +AVLSAC H+GL+ EG K F +M S YGI   +E ++C
Sbjct: 492 REALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSC 551

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           ++D+ GRAG L +A  I+ + P T  +A + +TL  AC +HR+  +G   A+ L+E  P+
Sbjct: 552 LIDILGRAGRLLEAYGILQQKPETRDNAELLSTLFCACCLHRDHLLGYTIAKLLVEKYPD 611

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           ++  Y ++ N+YA+   WD   +VR  M+++G+RK PGC+W++       F  +D S+ Q
Sbjct: 612 DASTYTVLFNLYASGESWDAAKRVRLKMKEVGMRKKPGCSWIEMNEKVCHFFAEDRSHPQ 671

Query: 674 AQEIYPLLGGLTELMK 689
           A+ +Y  L  L+  M+
Sbjct: 672 AENVYECLALLSGHME 687



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 114/264 (43%), Gaps = 42/264 (15%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   GN  KA + + ++       D+V  +F  ++  C ++ AL +GKQ+H       LE
Sbjct: 384 YVSVGNWFKAVDVYDQMVSVGVQPDIV--TFTSVLSTCSQLAALEKGKQIHLSISESRLE 441

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + +L+  L+  Y+       A  +  +   +  + W ++IS Y   G   EAL  + +M
Sbjct: 442 TDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEM 501

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQ 224
           Q   ++ D  T+ +VL ACG    +D G    S + + +  E S+  ++ L+ + G+ G+
Sbjct: 502 QKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGR 561

Query: 225 V-------------------------------------DVARRLFDKMLERDAVSWNTMI 247
           +                                      +A+ L +K  + DA ++  + 
Sbjct: 562 LLEAYGILQQKPETRDNAELLSTLFCACCLHRDHLLGYTIAKLLVEKYPD-DASTYTVLF 620

Query: 248 SAYASKGLWKEAFQLFVEMQEEGV 271
           + YAS   W  A ++ ++M+E G+
Sbjct: 621 NLYASGESWDAAKRVRLKMKEVGM 644


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 204/629 (32%), Positives = 317/629 (50%), Gaps = 79/629 (12%)

Query: 143  WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
            WNL I   V      E+L ++++M+      +NFT+P V KAC  + DV    +VH+ + 
Sbjct: 626  WNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 685

Query: 203  ACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                WS +FV  A V M+ K   VD A ++F++M ERDA +WN M+S +   G   +AF 
Sbjct: 686  KSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFS 745

Query: 262  LFVEMQ-----------------------------------EEGVEVNVI---TWNTIAG 283
            LF EM+                                     GV+V V    TW +  G
Sbjct: 746  LFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYG 805

Query: 284  GCLRTGNFKGVLELLSR-----------------------------MRTQETYLDSVATV 314
             C    + K V E + R                             +  +E +   ++T 
Sbjct: 806  KCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTF 865

Query: 315  IGLGA-CSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            I L A C +   L  G+ IH  A+  G   + E + N  I+MYS+ +D   A +LF +  
Sbjct: 866  INLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAI-NTFISMYSKSEDTCSARLLFDIMT 924

Query: 373  EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
             ++ ++W  M+SGY      +E+  LF  M +SG +P+ VT+ S++  C +  +L+ GK 
Sbjct: 925  SRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGK- 983

Query: 433  FHCYILRRAMF----NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
               +I  RA       +++++ N+L++MY++ G + EA+ +FD    +  VT+T++IAGY
Sbjct: 984  ---WIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGY 1040

Query: 489  GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
             + G    ALKLF +M     KP+H+T +AVL AC+HSG + +G + F  M  +Y I P 
Sbjct: 1041 ALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPG 1100

Query: 549  LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
            L+H++CMVDL GR G L +A E+I  M   P + +W  LL AC+IHRN  I E AAE L 
Sbjct: 1101 LDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLF 1160

Query: 609  ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
               P+ +  YV +AN+YAA G WD  A++R+ M+   ++K PG + +        F V +
Sbjct: 1161 NLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGE 1220

Query: 669  TSNVQAQEIYPLLGGLTELMKDAGYVVKE 697
              +V+ + IY  L GL+   KD   + K+
Sbjct: 1221 HGHVENEVIYFTLNGLSLFAKDKHVLYKD 1249



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 135/529 (25%), Positives = 223/529 (42%), Gaps = 81/529 (15%)

Query: 44   LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
            L  F   G+  KAF  F  +R+   + D V  +   +I      K+L   + +HA  I L
Sbjct: 731  LSGFCQSGHTDKAFSLFREMRLNEITPDSV--TVMTLIQSASFEKSLKLLEAMHAVGIRL 788

Query: 104  GLEKNPVLVPKLVTFYASFSLYNNACFLVE--NSNIRYPLPWNLLISLYVRDGFYAEALC 161
            G++    +    ++ Y      ++A  + E  +   R  + WN +   Y   G   +A  
Sbjct: 789  GVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFG 848

Query: 162  VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
            +Y  M     + D  T+ ++  +C     +  GR++HS  I    +  +   N  +SMY 
Sbjct: 849  LYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYS 908

Query: 221  KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
            K      AR LFD M  R  VSW  MIS YA KG   EA  LF  M + G + +++T  +
Sbjct: 909  KSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLS 968

Query: 281  IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA-VRG 339
            +  GC   G F                                G+L+ GK I   A + G
Sbjct: 969  LISGC---GKF--------------------------------GSLETGKWIDARADIYG 993

Query: 340  CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            C  +   + NALI MYS+C  +  A  +F  T EK+++TW +M++GY       E+  LF
Sbjct: 994  CKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLF 1053

Query: 400  REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
             +M     +PN++T  ++L  CA   +L+ G E+   + +    +  L  ++ +V++  R
Sbjct: 1054 SKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGR 1113

Query: 460  SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
             GK+ E                               AL+L   M+    KPD     A+
Sbjct: 1114 KGKLEE-------------------------------ALELIRNMS---AKPDAGIWGAL 1139

Query: 520  LSACS-HSGLVVEGQKQFERMTSIYGIFPQL-EHFACMVDLYGRAGLLN 566
            L+AC  H  + +  Q       S++ + PQ+   +  M ++Y  AG+ +
Sbjct: 1140 LNACKIHRNVKIAEQA----AESLFNLEPQMAAPYVEMANIYAAAGMWD 1184



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 122/255 (47%), Gaps = 22/255 (8%)

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           E VR ++  ++ R         L++++   S+  WN  +    + +   ES  LFREM R
Sbjct: 601 EQVRKSMSLIHRR---------LYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKR 651

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G EPN  T   +   CAR+A++   +  H ++++   +++ + +  + V+M+ +   V 
Sbjct: 652 GGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSD-VFVGTATVDMFVKCNSVD 710

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A  VF+ M  RD  T+ ++++G+   G    A  LF EM  N+I PD VT++ ++ + S
Sbjct: 711 YAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSAS 770

Query: 525 HSGLVVEGQKQFERMTSI---YGIFPQLEHFACMVDLYGRAGLLNKAK---EIITKMPYT 578
               +    K  E M ++    G+  Q+      +  YG+ G L+ AK   E I +   T
Sbjct: 771 FEKSL----KLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRT 826

Query: 579 PTSAMWATLLGACQI 593
             S  W ++  A  +
Sbjct: 827 VVS--WNSMFKAYSV 839


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 195/597 (32%), Positives = 315/597 (52%), Gaps = 47/597 (7%)

Query: 108 NPVLVPK--------LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159
           NP  +PK        L+  Y    L   A  L +    R  + W ++I+ Y     +  A
Sbjct: 34  NPPFIPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHA 93

Query: 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSM 218
             V+ +M +  +  + FT  SVLKAC  M  + +GR+VH   I    +  ++V NAL+ M
Sbjct: 94  WMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDM 153

Query: 219 YGKFG-QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           Y      +D A  +F  +  ++ VSW T+                               
Sbjct: 154 YATCCVSMDDACMVFRGIHLKNEVSWTTL------------------------------- 182

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
              IAG   R   + G L +  +M  +E  L+  +  I + AC+ +G+   G+++H +  
Sbjct: 183 ---IAGYTHRDDGYGG-LRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVT 238

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           +  +     V N+++ MY RC     A   F    ++ +ITWN++++GY   +   ES +
Sbjct: 239 KHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSN-PTESLY 297

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           +F  M   G  PN  T  SI+  CA +A L  G++ H  I+RR + + +L L N+L++MY
Sbjct: 298 VFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGL-DGNLALSNALIDMY 356

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           ++ G + ++  VF  MSRRD V++T+++ GYG  G G  A++LF++M ++ I+PD V  +
Sbjct: 357 SKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFM 416

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
           A+LSACSH+GLV EG + F+ M   Y I P  E + C+VDL GRAG + +A E+I  MP+
Sbjct: 417 AILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPF 476

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637
            P   +W   LGAC+ H    +G+ AA ++L+ RP  +G YV+++N+YAA G W + A++
Sbjct: 477 KPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARL 536

Query: 638 RTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           R  M+ +G +K  G +WV+ GN    F+V D    + + IY +L  L   MK++GYV
Sbjct: 537 RKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLENLIGHMKESGYV 593



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 192/415 (46%), Gaps = 41/415 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL-YNNACFLVEN 134
           + + ++  C  +K L+ G+ +H  AI  GL+    +   L+  YA+  +  ++AC +   
Sbjct: 111 TISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRG 170

Query: 135 SNIRYPLPWNLLISLYV-RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
            +++  + W  LI+ Y  RD  Y   L V++QM    +  + F++   ++AC  +    F
Sbjct: 171 IHLKNEVSWTTLIAGYTHRDDGYG-GLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTF 229

Query: 194 GRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H+ +     E +L V N+++ MY +      A R F +M +RD ++WNT+I+ Y  
Sbjct: 230 GEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYER 289

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                E+  +F  M+ EG   N  T+ +I                               
Sbjct: 290 SNP-TESLYVFSMMESEGFSPNCFTFTSI------------------------------- 317

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               + AC+ +  L  G++IHG  +R        + NALI MYS+C ++  ++ +F   +
Sbjct: 318 ----MAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMS 373

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            + +++W +M+ GY      EE+  LF +M RSG+ P+ V   +IL  C+    +  G  
Sbjct: 374 RRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLR 433

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIA 486
           +   ++     +    ++  +V++  R+GKV EA  + + M  + DE  +   + 
Sbjct: 434 YFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLG 488


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 202/621 (32%), Positives = 320/621 (51%), Gaps = 46/621 (7%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C  ++AL   K LHA  +   L  +P L   L+  YAS    ++A  L   S+   
Sbjct: 10  LIKQCVTLEAL---KSLHASILKSHL--HPHLCTSLIAQYASLGSISHAYALFSTSHSSN 64

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
              WN +I  +        +L +Y +M    I+  NFT+P +LKACG + D + G   H+
Sbjct: 65  VFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHA 124

Query: 200 CIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            +    +E  +FV N+L++MYG+FG  D +R                             
Sbjct: 125 HVVVFGYESDVFVANSLMAMYGRFGCFDFSR----------------------------- 155

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
             Q+F  M E     NV++W+++ G     G ++  L L  RM   E    +  +++   
Sbjct: 156 --QVFERMPER----NVVSWSSMVGAYAHNGRYEEGLLLFWRM-LNEGIAPNRGSIVNAM 208

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC H        +     +       ++V+NA + MY+RC  +  A   F    +K ++ 
Sbjct: 209 ACIH--REHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVA 266

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W SM+  Y   D    +  LF++M   G+ P+ VT+ S++   + +A+ Q  +  H  ++
Sbjct: 267 WTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHG-VI 325

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
            R+ F  H+ L  +++++Y + G +  A+  FD MS R+ ++++++I+GYG+ G GR AL
Sbjct: 326 TRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREAL 385

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LF++M K  IKPDH+  V VLSACSH GL+ EG + F+ M   +G+ P+ EH+ACMVDL
Sbjct: 386 CLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDL 444

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L++A+  I +MP TP + +W  LLGAC+IH N    E AA  L     EN G Y
Sbjct: 445 LGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAENPGRY 504

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           +L++N+YA++G   +   +R  M+  GVRK  G   ++  N    F+  DTSN Q   IY
Sbjct: 505 ILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTFVAGDTSNPQTDLIY 564

Query: 679 PLLGGLTELMKDAGYVVKEEF 699
             L  L + +++AGYV    F
Sbjct: 565 SELRKLMDRIQEAGYVPDLSF 585



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 182/400 (45%), Gaps = 42/400 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  CG +     G + HA  +  G E +  +   L+  Y  F  ++ +  + E  
Sbjct: 102 TFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERM 161

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC--GEMMDVDF 193
             R  + W+ ++  Y  +G Y E L ++ +M +  I  +  +  + + AC   E    DF
Sbjct: 162 PERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM-ACIHREHEADDF 220

Query: 194 GRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            RVV   ID   +    V NA + MY + G++DVARR F  +L++D V+W +MI AY   
Sbjct: 221 CRVV---IDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQA 277

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
            L   A +LF +M+  G+                                     DSV  
Sbjct: 278 DLPINALELFKQMKLLGI-----------------------------------VPDSVTL 302

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           +  + A S++ + +L + +HG   R  +  +  +  A+I +Y +C +L +A   F   + 
Sbjct: 303 LSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSA 362

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +++I+W++M+SGY       E+  LF +M ++ ++P+++    +L  C+    +  G E 
Sbjct: 363 RNLISWSTMISGYGMHGHGREALCLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWEC 421

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
              + R          +  +V++  R+G++ EA++  + M
Sbjct: 422 FKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERM 461


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 204/607 (33%), Positives = 317/607 (52%), Gaps = 71/607 (11%)

Query: 94  KQLHA-CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           K+LH+   I   L  NP L  KL+  YA      +   + +    +  + +N++I  YV 
Sbjct: 55  KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 114

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFV 211
           +  Y++AL V+K M    I  D++TYP VLKA     D+  G  +H+ +     + ++FV
Sbjct: 115 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFV 174

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N L+SMYGK G +  A R+ D+M  RD                                
Sbjct: 175 GNGLISMYGKCGCLVEACRVLDQMPCRD-------------------------------- 202

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
              V++WN++  GC R G F   LE+   M            ++GL   +   A  L   
Sbjct: 203 ---VVSWNSLVAGCARNGQFDDALEVCKEME-----------LLGLKPDAGTMASLLPA- 247

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
                          V N  +   S  K++      F   A KS+++WN M++ Y +   
Sbjct: 248 ---------------VTNTCLDNVSFVKEM------FMKLANKSLVSWNVMIAVYMNNSM 286

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             E+  +F +M    V+P+ ++IAS+LP C  ++ L  G+  H Y++R+ +   +LLL N
Sbjct: 287 PAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRL-QPNLLLEN 345

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +L++MYA+ G +  A+ VFD M  RD V++TS+I+ YG+ G+GR A+ LF  M    + P
Sbjct: 346 ALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNP 405

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D +  V+VLSACSH+GL+ EG+  F+ MT    I P++EHF CMVDL GRAG +++A   
Sbjct: 406 DSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGF 465

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I +MP  P   +W  LL AC+++ N  IG  AA++L +  PE SGYYVL++N+YA  G W
Sbjct: 466 IKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRW 525

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
           + +  VR+ M+  G++K+PG +  +  N    FL  D S+ Q+++IY  L      MK+A
Sbjct: 526 EDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEA 585

Query: 692 GYVVKEE 698
           GYV + +
Sbjct: 586 GYVPETD 592



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 164/380 (43%), Gaps = 79/380 (20%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G Q+HA  + +GL+ N  +   L++ Y        AC +++    R  + WN L++   R
Sbjct: 156 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCAR 215

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVH 212
           +G + +AL V K+M+   ++ D  T  S+L A           V ++C+D          
Sbjct: 216 NGQFDDALEVCKEMELLGLKPDAGTMASLLPA-----------VTNTCLD---------- 254

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
                       V   + +F K+  +  VSWN MI+ Y +  +  EA  +F++M++  V+
Sbjct: 255 -----------NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVD 303

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            + I                                 S+A+V  L AC  + AL LG+ I
Sbjct: 304 PDAI---------------------------------SIASV--LPACGDLSALLLGRRI 328

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           H   VR        + NALI MY++C  L +A  +F     + +++W SM+S Y      
Sbjct: 329 HEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKG 388

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF------HCYILRRAMFNEH 446
            ++  LF  M   G+ P+ +   S+L  C+    L  G+ +       C I+ R    EH
Sbjct: 389 RDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRI---EH 445

Query: 447 LLLWNSLVEMYARSGKVPEA 466
            +    +V++  R+G+V EA
Sbjct: 446 FV---CMVDLLGRAGQVDEA 462



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 5/199 (2%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           ++A + F ++   A   D +  S A ++  CG + AL  G+++H   +   L+ N +L  
Sbjct: 288 AEAVDIFLQMEDHAVDPDAI--SIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLEN 345

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            L+  YA       A  + +    R  + W  +IS Y  +G   +A+ ++ +MQ   +  
Sbjct: 346 ALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNP 405

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNA-LVSMYGKFGQVDVARRL 231
           D+  + SVL AC     +D GR     + + C       H   +V + G+ GQVD A   
Sbjct: 406 DSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGF 465

Query: 232 FDKM-LERDAVSWNTMISA 249
             +M +E +   W  ++SA
Sbjct: 466 IKQMPMEPNERVWGALLSA 484


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 208/620 (33%), Positives = 323/620 (52%), Gaps = 40/620 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A  I    +++    G  LHA +I  G+  N  +   +V  Y  F+    A  + +  
Sbjct: 115 TYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVM 174

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +IS + R+ ++ +++ V+  M    +  D+ T  +VL A  E+ +   G 
Sbjct: 175 PERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGM 234

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            +  C+ +       ++V   L+S+Y K G+    R LFD++ + D +S+N MIS Y   
Sbjct: 235 GIQ-CLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
              + A  LF E+   G  VN  T   +    L   + +     LSR+    +       
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQ-----LSRLIQNLS------- 341

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                       LK+G  +  S           V  AL T+Y R  +++ A  LF  + E
Sbjct: 342 ------------LKIGIILQPS-----------VSTALTTVYCRLNEVQFARQLFDESPE 378

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           KS+ +WN+M+SGYT     + +  LF+EM    + PN VT+ SIL  CA++  L  GK  
Sbjct: 379 KSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWV 437

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  I +      ++ +  +LV+MYA+ G + EA+ +FDLM  ++ VT+ ++I GYG+ G 
Sbjct: 438 HGLI-KSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH 496

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G+ ALKLF EM ++ I P  VT +++L ACSHSGLV EG + F  M + YG  P  EH+A
Sbjct: 497 GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYA 556

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVD+ GRAG L  A E I +MP  P  A+W  LLGAC IH+NT +   A+++L +  PE
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N GYYVL++N+Y+    + K A VR  ++   + K PGC  ++  +    F   D S+ Q
Sbjct: 617 NVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQ 676

Query: 674 AQEIYPLLGGLTELMKDAGY 693
           A  I+ +L  LT  M++AGY
Sbjct: 677 ATAIFEMLEKLTGKMREAGY 696



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 215/441 (48%), Gaps = 52/441 (11%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVH--S 199
           +N+LI  +  +G    ++ +Y  ++ +  +R DNFTY   + A   + D   G ++H  S
Sbjct: 80  FNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHS 139

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +D     +LFV +A+V +Y KF + ++AR++FD M ERD V WNTMIS ++    ++++
Sbjct: 140 IVDGVAS-NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDS 198

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++FV+M + G+  +  T  T+            V EL      QE  L       G+G 
Sbjct: 199 IRVFVDMLDVGLSFDSTTLATV---------LTAVAEL------QEYRL-------GMG- 235

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
              +  L   K +H             V   LI++YS+C       ILF    +  +I++
Sbjct: 236 ---IQCLASKKGLHSDVY---------VLTGLISLYSKCGKSCKGRILFDQIDQPDLISY 283

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+SGYT     E +  LFRE+  SG   N  T+  ++P+     +LQ  +      L+
Sbjct: 284 NAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLK 343

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             +  +   +  +L  +Y R  +V  A+ +FD    +   ++ ++I+GY   G    A+ 
Sbjct: 344 IGIILQP-SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAIS 402

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLV-----VEGQKQFERMTSIYGIFPQLEHFAC 554
           LF+EM   Q+ P+ VT+ ++LSAC+  G +     V G  + ER+ S       +     
Sbjct: 403 LFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES------NVYVSTA 455

Query: 555 MVDLYGRAGLLNKAKEIITKM 575
           +VD+Y + G + +A+++   M
Sbjct: 456 LVDMYAKCGSIVEARQLFDLM 476



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/465 (20%), Positives = 190/465 (40%), Gaps = 68/465 (14%)

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L   +   G V   R+LF+K+ + D   +N +I  ++  GL K +  L+  ++++     
Sbjct: 52  LTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKT---- 107

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
                      LR  NF              TY         + A S +   ++G  +H 
Sbjct: 108 ----------NLRPDNF--------------TY------AFAISAASRLEDERVGVLLHA 137

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            ++         V +A++ +Y +      A  +F +  E+  + WN+M+SG++     E+
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFED 197

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           S  +F +M   G+  +  T+A++L   A +   + G    C   ++ + ++  +L   L+
Sbjct: 198 SIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVL-TGLI 256

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
            +Y++ GK  + + +FD + + D ++Y ++I+GY    E   A+ LF E+  +  + +  
Sbjct: 257 SLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSS 316

Query: 515 TMVAVLSA----------------CSHSGLVVE--------------GQKQFERMTSIYG 544
           T+V ++                      G++++               + QF R      
Sbjct: 317 TLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDES 376

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKM--PYTPTSAMWATLLGACQIHRNTGIGEW 602
               L  +  M+  Y + GL ++A  +  +M    +P      ++L AC       IG+W
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKW 436

Query: 603 AAEKLLETRPENSGYY-VLIANMYAATGCWDKLAKVRTCMRDLGV 646
               +   R E++ Y    + +MYA  G   +  ++   M D  V
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 6/209 (2%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G   +A   F  +    + + V + S   I+  C ++ AL+ GK +H    + 
Sbjct: 388 ISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTS---ILSACAQLGALSIGKWVHGLIKSE 444

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            LE N  +   LV  YA       A  L +    +  + WN +I+ Y   G   EAL ++
Sbjct: 445 RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLF 504

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNA-LVSMYGK 221
            +M    I     T+ S+L AC     V  G  + HS  +      +  H A +V + G+
Sbjct: 505 YEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGR 564

Query: 222 FGQVDVARRLFDKM-LERDAVSWNTMISA 249
            GQ+  A    ++M LE     W  ++ A
Sbjct: 565 AGQLTNALEFIERMPLEPGPAVWGALLGA 593


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 208/620 (33%), Positives = 323/620 (52%), Gaps = 40/620 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A  I    +++    G  LHA +I  G+  N  +   +V  Y  F+    A  + +  
Sbjct: 115 TYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVM 174

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +IS + R+ ++ +++ V+  M    +  D+ T  +VL A  E+ +   G 
Sbjct: 175 PERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGM 234

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            +  C+ +       ++V   L+S+Y K G+    R LFD++ + D +S+N MIS Y   
Sbjct: 235 GIQ-CLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
              + A  LF E+   G  VN  T   +    L   + +     LSR+    +       
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQ-----LSRLIQNLS------- 341

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                       LK+G  +  S           V  AL T+Y R  +++ A  LF  + E
Sbjct: 342 ------------LKIGIILQPS-----------VSTALTTVYCRLNEVQFARQLFDESPE 378

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           KS+ +WN+M+SGYT     + +  LF+EM    + PN VT+ SIL  CA++  L  GK  
Sbjct: 379 KSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWV 437

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  I +      ++ +  +LV+MYA+ G + EA+ +FDLM  ++ VT+ ++I GYG+ G 
Sbjct: 438 HGLI-KSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH 496

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G+ ALKLF EM ++ I P  VT +++L ACSHSGLV EG + F  M + YG  P  EH+A
Sbjct: 497 GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYA 556

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVD+ GRAG L  A E I +MP  P  A+W  LLGAC IH+NT +   A+++L +  PE
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N GYYVL++N+Y+    + K A VR  ++   + K PGC  ++  +    F   D S+ Q
Sbjct: 617 NVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQ 676

Query: 674 AQEIYPLLGGLTELMKDAGY 693
           A  I+ +L  LT  M++AGY
Sbjct: 677 ATAIFEMLEKLTGKMREAGY 696



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 214/441 (48%), Gaps = 52/441 (11%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--S 199
           +N+LI  +  +G    ++ +Y  + +   +R DNFTY   + A   + D   G ++H  S
Sbjct: 80  FNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHS 139

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +D     +LFV +A+V +Y KF + ++AR++FD M ERD V WNTMIS ++    ++++
Sbjct: 140 IVDGVAS-NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDS 198

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++FV+M + G+  +  T  T+            V EL      QE  L       G+G 
Sbjct: 199 IRVFVDMLDVGLSFDSTTLATV---------LTAVAEL------QEYRL-------GMG- 235

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
              +  L   K +H             V   LI++YS+C       ILF    +  +I++
Sbjct: 236 ---IQCLASKKGLHSDVY---------VLTGLISLYSKCGKSCKGRILFDQIDQPDLISY 283

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+SGYT     E +  LFRE+  SG   N  T+  ++P+     +LQ  +      L+
Sbjct: 284 NAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLK 343

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             +  +   +  +L  +Y R  +V  A+ +FD    +   ++ ++I+GY   G    A+ 
Sbjct: 344 IGIILQP-SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAIS 402

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLV-----VEGQKQFERMTSIYGIFPQLEHFAC 554
           LF+EM   Q+ P+ VT+ ++LSAC+  G +     V G  + ER+ S       +     
Sbjct: 403 LFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES------NVYVSTA 455

Query: 555 MVDLYGRAGLLNKAKEIITKM 575
           +VD+Y + G + +A+++   M
Sbjct: 456 LVDMYAKCGSIVEARQLFDLM 476



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/465 (20%), Positives = 189/465 (40%), Gaps = 68/465 (14%)

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L   +   G V   R+LF+K+ + D   +N +I  ++  GL K +  L+  +++      
Sbjct: 52  LTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXT---- 107

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
                      LR  NF              TY         + A S +   ++G  +H 
Sbjct: 108 ----------NLRPDNF--------------TY------AFAISAASRLEDERVGVLLHA 137

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
            ++         V +A++ +Y +      A  +F +  E+  + WN+M+SG++     E+
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFED 197

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           S  +F +M   G+  +  T+A++L   A +   + G    C   ++ + ++  +L   L+
Sbjct: 198 SIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVL-TGLI 256

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
            +Y++ GK  + + +FD + + D ++Y ++I+GY    E   A+ LF E+  +  + +  
Sbjct: 257 SLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSS 316

Query: 515 TMVAVLSA----------------CSHSGLVVE--------------GQKQFERMTSIYG 544
           T+V ++                      G++++               + QF R      
Sbjct: 317 TLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDES 376

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKM--PYTPTSAMWATLLGACQIHRNTGIGEW 602
               L  +  M+  Y + GL ++A  +  +M    +P      ++L AC       IG+W
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKW 436

Query: 603 AAEKLLETRPENSGYY-VLIANMYAATGCWDKLAKVRTCMRDLGV 646
               +   R E++ Y    + +MYA  G   +  ++   M D  V
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 6/209 (2%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G   +A   F  +    + + V + S   I+  C ++ AL+ GK +H    + 
Sbjct: 388 ISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTS---ILSACAQLGALSIGKWVHGLIKSE 444

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            LE N  +   LV  YA       A  L +    +  + WN +I+ Y   G   EAL ++
Sbjct: 445 RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLF 504

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNA-LVSMYGK 221
            +M    I     T+ S+L AC     V  G  + HS  +      +  H A +V + G+
Sbjct: 505 YEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGR 564

Query: 222 FGQVDVARRLFDKM-LERDAVSWNTMISA 249
            GQ+  A    ++M LE     W  ++ A
Sbjct: 565 AGQLTNALEFIERMPLEPGPAVWGALLGA 593


>gi|2462841|gb|AAB72176.1| unknown [Arabidopsis thaliana]
          Length = 290

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/307 (54%), Positives = 215/307 (70%), Gaps = 20/307 (6%)

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG  PN++T+ASILPL ARV NLQHGKEFHCYILRR  + + L+LWNSLV+MYA+SG
Sbjct: 1   MLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSG 60

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           ++  AK VFD M +RD+VTYTSLI GYG  G+G VAL  F++M+++ IKPDHVTMVAVLS
Sbjct: 61  EIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLS 120

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSHS LV EG   F +M  ++GI  +LEH++CMVDLY RAG L+KA++I   +PY P+S
Sbjct: 121 ACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSS 180

Query: 582 AMWATLLGACQIHRNTGIGEWAAEK-LLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           AM ATLL AC IH NT IGEWAA+K LLET+PE+ G+Y+L+A+MYA TG W KL  V+T 
Sbjct: 181 AMCATLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTL 240

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC 700
           + DLGV+K    A           L++  S +  +   P        M D   + +E+  
Sbjct: 241 LSDLGVQKAHEFA-----------LMETDSELDGENNKP--------MNDDSVINQEQSS 281

Query: 701 SEEEIVE 707
            EE +VE
Sbjct: 282 DEERLVE 288



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 94/167 (56%), Gaps = 13/167 (7%)

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILF 368
           ++A+++ L A   VG L+ GKE H   +R   Y +   + N+L+ MY++  ++  A  +F
Sbjct: 12  TLASILPLFA--RVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVF 69

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               ++  +T+ S++ GY  L   E +   F++M RSG++P++VT+ ++L  C+    ++
Sbjct: 70  DSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVR 129

Query: 429 HG-----KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            G     K  H + +R  +  EH   ++ +V++Y R+G + +A+ +F
Sbjct: 130 EGHWLFTKMEHVFGIRLRL--EH---YSCMVDLYCRAGYLDKARDIF 171



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARRL 231
           ++ T  S+L     + ++  G+  H  I     ++  L + N+LV MY K G++  A+R+
Sbjct: 9   NHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRV 68

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           FD M +RD V++ ++I  Y   G  + A   F +M   G++ + +T   +   C
Sbjct: 69  FDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSAC 122


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 305/582 (52%), Gaps = 24/582 (4%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           ++T YA      +A  L ++   +  + WN ++S YVR G   EA  V+ +M  +    +
Sbjct: 101 MLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----N 156

Query: 175 NFTYPSVLKACGEMMDVDFGRV--VHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           + ++  +L A      V  GR+       ++  +W L   N L+  Y K   +  AR+LF
Sbjct: 157 SISWNGLLAAY-----VRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLF 211

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D++  RD +SWNTMIS YA  G   +A +LF    EE    +V TW  +    ++ G   
Sbjct: 212 DQIPVRDLISWNTMISGYAQDGDLSQARRLF----EESPVRDVFTWTAMVYAYVQDGMLD 267

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
               +   M  +      ++  + +   +    + +G+E+         G +    N +I
Sbjct: 268 EARRVFDEMPQKR----EMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSW----NIMI 319

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
           + Y +  DL  A  LF M  ++  ++W ++++GY      EE+  +  EM R G   N  
Sbjct: 320 SGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRS 379

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T    L  CA +A L+ GK+ H  ++R   + +  L+ N+LV MY + G + EA  VF  
Sbjct: 380 TFCCALSACADIAALELGKQVHGQVVRTG-YEKGCLVGNALVGMYCKCGCIDEAYDVFQG 438

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           +  +D V++ +++AGY   G GR AL +FE M    +KPD +TMV VLSACSH+GL   G
Sbjct: 439 VQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRG 498

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            + F  M   YGI P  +H+ACM+DL GRAG L +A+ +I  MP+ P +A W  LLGA +
Sbjct: 499 TEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASR 558

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           IH N  +GE AAE + +  P NSG YVL++N+YAA+G W  ++K+R  MR +GV+K PG 
Sbjct: 559 IHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGY 618

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +WV+  N    F V D  + +   IY  L  L   MK  GYV
Sbjct: 619 SWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYV 660



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 125/524 (23%), Positives = 221/524 (42%), Gaps = 73/524 (13%)

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE 206
           IS ++R+G    ALCV+  M  R    ++ +Y +++   G + +  F  +     D    
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLR----NSVSYNAMIS--GYLRNAKFS-LARDLFDKMPH 92

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
             LF  N +++ Y +  ++  AR LFD M E+D VSWN M+S Y   G   EA  +F  M
Sbjct: 93  KDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM 152

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
             +    N I+WN +    +R+G  +    L       E           L +C+ +   
Sbjct: 153 PHK----NSISWNGLLAAYVRSGRLEEARRLFESKSDWE-----------LISCNCLMGG 197

Query: 327 KLGKEIHGSAVRGCYGEYENVR-----NALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            + + + G A R  + +   VR     N +I+ Y++  DL  A  LF+ +  + + TW +
Sbjct: 198 YVKRNMLGDA-RQLFDQIP-VRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTA 255

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+  Y      +E+  +F EM +       V IA      A+   +  G+E     L   
Sbjct: 256 MVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGY----AQYKRMDMGRE-----LFEE 306

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           M   ++  WN ++  Y ++G + +A+++FD+M +RD V++ ++IAGY   G    A+ + 
Sbjct: 307 MPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNML 366

Query: 502 EEMNKNQIKPDHVTMVAVLSACS-----HSGLVVEGQ---KQFER--------------- 538
            EM ++    +  T    LSAC+       G  V GQ     +E+               
Sbjct: 367 VEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKC 426

Query: 539 --MTSIYGIFPQLEH-----FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
             +   Y +F  ++H     +  M+  Y R G   +A  +   M          T++G  
Sbjct: 427 GCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVL 486

Query: 592 QIHRNTGIGEWAAEKLLETRPE-----NSGYYVLIANMYAATGC 630
               +TG+ +   E       +     NS +Y  + ++    GC
Sbjct: 487 SACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGC 530



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 41/282 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C  + AL  GKQ+H   +  G EK  ++   LV  Y      + A  + +  
Sbjct: 380 TFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGV 439

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM------- 188
             +  + WN +++ Y R GF  +AL V++ M +  ++ D  T   VL AC          
Sbjct: 440 QHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGT 499

Query: 189 -----MDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVS 242
                M+ D+G   +S   AC          ++ + G+ G ++ A+ L   M  E DA +
Sbjct: 500 EYFHSMNKDYGITPNSKHYAC----------MIDLLGRAGCLEEAQNLIRNMPFEPDAAT 549

Query: 243 WNTMISAYASKG---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
           W  ++ A    G   L ++A ++  +M+     + V+  N  A     +G +  V ++  
Sbjct: 550 WGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAA----SGRWVDVSKMRL 605

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
           +MR            IG+        +++  +IH   V  C+
Sbjct: 606 KMRQ-----------IGVQKTPGYSWVEVQNKIHTFTVGDCF 636



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           + H +     +  + R+G    A  VFD M  R+ V+Y ++I+GY    +  +A  LF++
Sbjct: 30  DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDK 89

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M       D  +   +L+  + +  + + +  F+ M         +  +  M+  Y R+G
Sbjct: 90  MPHK----DLFSWNLMLTGYARNRRLRDARMLFDSMPE-----KDVVSWNAMLSGYVRSG 140

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGA 590
            +++A+++  +MP+   S  W  LL A
Sbjct: 141 HVDEARDVFDRMPHK-NSISWNGLLAA 166


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 205/607 (33%), Positives = 311/607 (51%), Gaps = 38/607 (6%)

Query: 89   ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
            AL   K +H  A   G   +  +   L+  YA     ++A  + +    R  + WN ++ 
Sbjct: 438  ALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMG 497

Query: 149  LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS 208
               ++G   EA  V+ QMQ   +  D+ TY S+L   G    +++   VH         S
Sbjct: 498  GLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLIS 557

Query: 209  LF-VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
             F V +A + MY + G +D AR LFDK+  R                             
Sbjct: 558  DFRVGSAFIHMYIRCGSIDDARLLFDKLSVR----------------------------- 588

Query: 268  EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                  +V TWN + GG  +    +  L L  +M+ +    D+   +  L A     AL+
Sbjct: 589  ------HVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALE 642

Query: 328  LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
              KE+H  A      +   V NAL+  YS+C ++++A  +F    E+++ TW  M+ G  
Sbjct: 643  WVKEVHSHATDAGLVDLR-VGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLA 701

Query: 388  HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
               C  ++   F +M R G+ P+  T  SIL  CA    L+  KE H + +   + ++ L
Sbjct: 702  QHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSD-L 760

Query: 448  LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
             + N+LV MYA+ G + +A+SVFD M  RD  ++T +I G    G G  AL  F +M   
Sbjct: 761  RVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSE 820

Query: 508  QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
              KP+  + VAVL+ACSH+GLV EG++QF  MT  YGI P +EH+ CMVDL GRAGLL +
Sbjct: 821  GFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEE 880

Query: 568  AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
            A+  I  MP  P  A W  LLGAC  + N  + E+AA++ L+ +P+++  YVL++N+YAA
Sbjct: 881  AELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAA 940

Query: 628  TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
            TG W++   VR+ M+  G+RK PG +W++  N    F+V DTS+ +++EIY  L  L E 
Sbjct: 941  TGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIER 1000

Query: 688  MKDAGYV 694
            +K  GYV
Sbjct: 1001 LKAKGYV 1007



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 149/539 (27%), Positives = 251/539 (46%), Gaps = 45/539 (8%)

Query: 59  AFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
           A  +IR+      + +DSF++  I+  C K + +   KQ+H C I  G+E+N  +  KL+
Sbjct: 104 AMLKIRVQQG---IAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160

Query: 117 TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
             Y        A  + +    +    W  +I  Y   G   +A+ VY +M+    + +  
Sbjct: 161 RVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEI 220

Query: 177 TYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           TY S+LKAC   +++ +G+ +H+  I +  +  + V  ALV+MY K G ++ A+ +FDKM
Sbjct: 221 TYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKM 280

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           +ER+ +SW  MI   A  G  +EAF LF++MQ EG   N  T+ +I              
Sbjct: 281 VERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSI-------------- 326

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                                L A +  GAL+  KE+H  AV         V NAL+ MY
Sbjct: 327 ---------------------LNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMY 365

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++   +  A ++F    E+ I +W  M+ G       +E+  LF +M R+G  PN  T  
Sbjct: 366 AKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYL 425

Query: 416 SIL--PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           SIL     A  + L+  K  H +    A F   L + N+L+ MYA+ G + +A+ VFD M
Sbjct: 426 SILNASAIASTSALEWVKVVHKHA-EEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM 484

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             RD +++ +++ G    G G  A  +F +M +  + PD  T +++L+    S   +E  
Sbjct: 485 CDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHG-STDALEWV 543

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            +  +     G+       +  + +Y R G ++ A+ +  K+     +   A + GA Q
Sbjct: 544 NEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQ 602



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 249/560 (44%), Gaps = 46/560 (8%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           CC  V  L  GK++HA  I  G + +  +   LV  Y       +A  + +    R  + 
Sbjct: 229 CCCPVN-LKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVIS 287

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           W ++I      G   EA  ++ QMQ      +++TY S+L A      +++ + VHS  +
Sbjct: 288 WTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV 347

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           +A     L V NALV MY K G +D AR +FD M ERD  SW  MI   A  G  +EAF 
Sbjct: 348 NAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFS 407

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF++MQ  G   N+ T+                                  +++   A +
Sbjct: 408 LFLQMQRNGCLPNLTTY---------------------------------LSILNASAIA 434

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
              AL+  K +H  A    +     + NALI MY++C  +  A ++F    ++ +I+WN+
Sbjct: 435 STSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNA 494

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+ G     C  E+  +F +M + G+ P+  T  S+L        L+   E H + +   
Sbjct: 495 MMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETG 554

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           + ++   + ++ + MY R G + +A+ +FD +S R   T+ ++I G   Q  GR AL LF
Sbjct: 555 LISD-FRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLF 613

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
            +M +    PD  T + +LSA +     +E  K+     +  G+   L     +V  Y +
Sbjct: 614 LQMQREGFIPDATTFINILSA-NVDEEALEWVKEVHSHATDAGLV-DLRVGNALVHTYSK 671

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE----NSGY 617
            G +  AK++   M     +  W  ++G    H   G G  A    L+   E    ++  
Sbjct: 672 CGNVKYAKQVFDDMVERNVTT-WTMMIGGLAQH---GCGHDAFSHFLQMLREGIVPDATT 727

Query: 618 YVLIANMYAATGCWDKLAKV 637
           YV I +  A+TG  + + +V
Sbjct: 728 YVSILSACASTGALEWVKEV 747



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 157/566 (27%), Positives = 252/566 (44%), Gaps = 51/566 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  I+       AL   K++H+ A+  GL  +  +   LV  YA     ++A  + +  
Sbjct: 322 TYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGM 381

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC--GEMMDVDF 193
             R    W ++I    + G   EA  ++ QMQ      +  TY S+L A        +++
Sbjct: 382 TERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEW 441

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
            +VVH    +A     L + NAL+ MY K G +D AR +FD M +RD +SWN M+   A 
Sbjct: 442 VKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQ 501

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G   EAF +F++MQ+EG+  +  T+                   LS + T  +      
Sbjct: 502 NGCGHEAFTVFLQMQQEGLVPDSTTY-------------------LSLLNTHGS------ 536

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                       AL+   E+H  AV  G   ++  V +A I MY RC  +  A +LF   
Sbjct: 537 ----------TDALEWVNEVHKHAVETGLISDFR-VGSAFIHMYIRCGSIDDARLLFDKL 585

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           + + + TWN+M+ G     C  E+  LF +M R G  P+  T  +IL        L+  K
Sbjct: 586 SVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVK 645

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           E H +     + +  L + N+LV  Y++ G V  AK VFD M  R+  T+T +I G    
Sbjct: 646 EVHSHATDAGLVD--LRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQH 703

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G  A   F +M +  I PD  T V++LSAC+ +G  +E  K+        G+   L  
Sbjct: 704 GCGHDAFSHFLQMLREGIVPDATTYVSILSACASTG-ALEWVKEVHNHAVSAGLVSDLRV 762

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
              +V +Y + G ++ A+ +   M      + W  ++G    H   G G  A +  ++ +
Sbjct: 763 GNALVHMYAKCGSIDDARSVFDDMVERDVFS-WTVMIGGLAQH---GRGLEALDFFVKMK 818

Query: 612 PEN---SGY-YVLIANMYAATGCWDK 633
            E    +GY YV +    +  G  D+
Sbjct: 819 SEGFKPNGYSYVAVLTACSHAGLVDE 844



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 221/477 (46%), Gaps = 46/477 (9%)

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALV 216
           +A+ + K    + I  D+F+Y ++L+ C +  D+   + VH CI  +  E +L+V N L+
Sbjct: 101 DAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            +Y + G++  AR++FDK+L++                                   N+ 
Sbjct: 161 RVYIRCGRLQCARQVFDKLLKK-----------------------------------NIY 185

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
            W T+ GG    G+ +  + +  +MR +    + +  +  L AC     LK GK+IH   
Sbjct: 186 IWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHI 245

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  +     V  AL+ MY +C  +  A ++F    E+++I+W  M+ G  H    +E+ 
Sbjct: 246 IQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAF 305

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF +M R G  PN  T  SIL   A    L+  KE H + +   +  + L + N+LV M
Sbjct: 306 HLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALD-LRVGNALVHM 364

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+SG + +A+ VFD M+ RD  ++T +I G    G G+ A  LF +M +N   P+  T 
Sbjct: 365 YAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTY 424

Query: 517 VAVLSACS-HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           +++L+A +  S   +E  K   +     G    L     ++ +Y + G ++ A+ +   M
Sbjct: 425 LSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM 484

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE----NSGYYVLIANMYAAT 628
                 + W  ++G        G G  A    L+ + E    +S  Y+ + N + +T
Sbjct: 485 CDRDVIS-WNAMMGGLA---QNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGST 537



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 195/467 (41%), Gaps = 41/467 (8%)

Query: 58  EAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           EAFT + +      +V DS  +  ++   G   AL    ++H  A+  GL  +  +    
Sbjct: 507 EAFT-VFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAF 565

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           +  Y      ++A  L +  ++R+   WN +I    +     EAL ++ QMQ      D 
Sbjct: 566 IHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDA 625

Query: 176 FTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
            T+ ++L A  +   +++ + VHS         L V NALV  Y K G V  A+++FD M
Sbjct: 626 TTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDM 685

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           +ER+  +W  MI   A  G   +AF  F++M  EG+  +  T+ +I   C  T       
Sbjct: 686 VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACAST------- 738

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                                       GAL+  KE+H  AV         V NAL+ MY
Sbjct: 739 ----------------------------GALEWVKEVHNHAVSAGLVSDLRVGNALVHMY 770

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++C  +  A  +F    E+ + +W  M+ G        E+   F +M   G +PN  +  
Sbjct: 771 AKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYV 830

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK-SVFDLMS 474
           ++L  C+    +  G+     + +       +  +  +V++  R+G + EA+  + ++  
Sbjct: 831 AVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPI 890

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             D+  + +L+        G + +  F    + ++KP   +   +LS
Sbjct: 891 EPDDAPWGALLG--ACVTYGNLEMAEFAAKERLKLKPKSASTYVLLS 935



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 153/318 (48%), Gaps = 6/318 (1%)

Query: 280 TIAGGCLRTGNF---KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           ++ G   +T N    K  + +L     Q   +DS + V  L  C     + L K++H   
Sbjct: 85  SVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCI 144

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++    +   V N L+ +Y RC  L+ A  +F    +K+I  W +M+ GY     AE++ 
Sbjct: 145 IKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAM 204

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            ++ +M +   +PN +T  SIL  C    NL+ GK+ H +I++   F   + +  +LV M
Sbjct: 205 RVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSG-FQSDVRVETALVNM 263

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y + G + +A+ +FD M  R+ +++T +I G    G G+ A  LF +M +    P+  T 
Sbjct: 264 YVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTY 323

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           V++L+A + +G  +E  K+        G+   L     +V +Y ++G ++ A+ +   M 
Sbjct: 324 VSILNANASAG-ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT 382

Query: 577 YTPTSAMWATLLGACQIH 594
                + W  ++G    H
Sbjct: 383 ERDIFS-WTVMIGGLAQH 399


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 191/602 (31%), Positives = 321/602 (53%), Gaps = 44/602 (7%)

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           ++R  + +N +I+ +  +     A+ ++ +M+    + D+FTY SVL     ++D D  +
Sbjct: 109 SMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVD-DEKQ 167

Query: 196 VVH---SCIDACHEWSLFVHNALVSMYGKFGQ----VDVARRLFDKMLERDAVSWNTMIS 248
            V    + + +   +   V NALVS+Y +       +  AR++FD + E+D  SW TM++
Sbjct: 168 CVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMT 227

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            Y   G +    +L   M E    + ++ +N +  G +  G ++  LE++ RM +    L
Sbjct: 228 GYVKNGCFDLGKELLKGMDEN---MKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIEL 284

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           D       + AC++   L+LGK++H   +R     + +  N+L+T+Y +C     A  +F
Sbjct: 285 DEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSF-HFDNSLVTLYYKCGKFNEARAIF 343

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF------------------------- 403
           +    K +++WN++LSGY       E+  +F+EM                          
Sbjct: 344 EKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLK 403

Query: 404 ------RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
                 R G EP     +  +  CA +    +G++FH  +++   F+  L   N+L+ MY
Sbjct: 404 LFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIG-FDSSLSAGNALITMY 462

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           A+ G V EA+ VF  M   D V++ +LIA  G  G G  A+ ++EEM K  I+PD +T +
Sbjct: 463 AKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFL 522

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
            VL+ACSH+GLV +G+K F  M ++Y I P  +H+A ++DL  R+G  ++A+ II  +P+
Sbjct: 523 TVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPF 582

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637
            PT+ +W  LL  C++H N  +G  AA+KL    PE+ G Y+L++NMYAATG W+++A+V
Sbjct: 583 KPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARV 642

Query: 638 RTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKE 697
           R  MRD GV+K   C+W++       FLVDDTS+ +A+ +Y  L  L + M+  GYV   
Sbjct: 643 RKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDT 702

Query: 698 EF 699
            F
Sbjct: 703 SF 704



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 196/452 (43%), Gaps = 78/452 (17%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L+ +Y K  ++D AR+LFD++ E D ++  TM+S Y + G    A  +F   +E  V 
Sbjct: 53  NRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVF---EETPVS 109

Query: 273 V-NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD--SVATVIGLGACSHVGALKLG 329
           + + + +N +  G     +    + L  +M+ +    D  + A+V+  G    V   K  
Sbjct: 110 MRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLA-GLALVVDDEKQC 168

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKD----LRHAYILFKMTAEKS---------- 375
            + H +A++   G   +V NAL+++YSRC      L  A  +F    EK           
Sbjct: 169 VQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTG 228

Query: 376 ----------------------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
                                 ++ +N+M+SGY +    +E+  + R M  SG+E +  T
Sbjct: 229 YVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFT 288

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             S++  CA    LQ GK+ H Y+LRR  F+ H    NSLV +Y + GK  EA+++F+ M
Sbjct: 289 YPSVIRACANARLLQLGKQVHAYVLRREDFSFHFD--NSLVTLYYKCGKFNEARAIFEKM 346

Query: 474 SRRDEVTYTSLIAGYGIQGE-------------------------------GRVALKLFE 502
             +D V++ +L++GY   G                                G   LKLF 
Sbjct: 347 PAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFS 406

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M +   +P        + +C+  G    GQ+   ++  I G    L     ++ +Y + 
Sbjct: 407 CMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKI-GFDSSLSAGNALITMYAKC 465

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           G++ +A+++   MP    S  W  L+ A   H
Sbjct: 466 GVVEEAQQVFRTMP-CLDSVSWNALIAALGQH 496



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 149/362 (41%), Gaps = 69/362 (19%)

Query: 58  EAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           EA   +R   +S  + LD F +  +I  C   + L  GKQ+HA  +    + +      L
Sbjct: 269 EALEMVRRMVSS-GIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSL 326

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG-- 173
           VT Y     +N A  + E    +  + WN L+S YV  G   EA  ++K+M+ + I    
Sbjct: 327 VTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWM 386

Query: 174 -------------DNFTYPSVLKACG-EMMDVDFGRVVHSC----------------IDA 203
                        +     S +K  G E  D  F   + SC                +  
Sbjct: 387 IMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKI 446

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             + SL   NAL++MY K G V+ A+++F  M   D+VSWN +I+A    G   EA  ++
Sbjct: 447 GFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVY 506

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            EM ++G+  + IT+ T+   C   G       L+ + R    Y +S+ TV  +      
Sbjct: 507 EEMLKKGIRPDRITFLTVLTACSHAG-------LVDQGR---KYFNSMETVYRIPP---- 552

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           GA    + I      G + E E++  +L                FK TAE     W ++L
Sbjct: 553 GADHYARLIDLLCRSGKFSEAESIIESLP---------------FKPTAE----IWEALL 593

Query: 384 SG 385
           SG
Sbjct: 594 SG 595



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 51/213 (23%)

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-- 475
           LPL  R  +LQ  +  H  I+    F  H  + N L+++Y +S ++  A+ +FD +S   
Sbjct: 23  LPL--RRTSLQLARAVHGNIITFG-FQPHAHILNRLIDVYCKSSELDYARQLFDEISEPD 79

Query: 476 -------------------------------RDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
                                          RD V Y ++I G+    +G  A+ LF +M
Sbjct: 80  KIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKM 139

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER-----MTSIYGIFPQLEHFACMVDLY 559
                KPD  T  +VL+  +   LVV+ +KQ  +     + S  G    + +   +V +Y
Sbjct: 140 KHEGFKPDDFTYASVLAGLA---LVVDDEKQCVQFHAAALKSGAGYVTSVSN--ALVSVY 194

Query: 560 GRAG----LLNKAKEIITKMPYTPTSAMWATLL 588
            R      LL+ A+++   +P     + W T++
Sbjct: 195 SRCASSPSLLHSARKVFDDIPEKDERS-WTTMM 226


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 206/647 (31%), Positives = 337/647 (52%), Gaps = 68/647 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALG-LEKNPVLV-PKLVTFYASFSLYNNACFLVEN-SN 136
           ++ C    + L  G++ HA A+  G L+ +       L++ YA   L ++A  L  +   
Sbjct: 167 LLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGA 226

Query: 137 IRYP----LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
              P    + WN ++SL V+ G   EA+ V   M +R +R D  T+ S L AC ++  + 
Sbjct: 227 TDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLS 286

Query: 193 FGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML--ERDAVSWNTMIS 248
            GR +H+ +  DA    + FV +ALV MY    +V  AR +FD +   ER    WN MI 
Sbjct: 287 LGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMIC 346

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            YA  GL ++A                                   LEL +RM T+   +
Sbjct: 347 GYAQAGLDEDA-----------------------------------LELFARMETEAGVV 371

Query: 309 DSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
            S  T+ G L +C+        + +HG  V+    +   V+NAL+ +Y+R  D+  A  +
Sbjct: 372 PSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWI 431

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG------------------VEP 409
           F     + +++WN++++G        ++  L REM + G                  V P
Sbjct: 432 FATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVP 491

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N +T+ ++LP CA +A    GKE H Y +R A+ +  + + ++LV+MYA+ G +  +++V
Sbjct: 492 NNITLMTLLPGCAMLAAPARGKEIHGYAVRHAL-DSDVAVGSALVDMYAKCGCLALSRAV 550

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGL 528
           FD + RR+ +T+  LI  YG+ G G  A+ LF+ M   ++ KP+ VT +A L+ACSHSG+
Sbjct: 551 FDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGM 610

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATL 587
           V  G + F  M   +G+ P  +  AC VD+ GRAG L++A  II+ M P     + W++ 
Sbjct: 611 VDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSF 670

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC++HRN  +GE AAE+L E  P+ + +YVL+ N+Y+A G W+K ++VR+ MR  GV 
Sbjct: 671 LGACRLHRNVALGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVS 730

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           K PGC+W++   V   F+  ++++ ++  ++  +  L E M+D GY 
Sbjct: 731 KEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRDQGYT 777



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 161/652 (24%), Positives = 278/652 (42%), Gaps = 88/652 (13%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFA--HIIFCCGKVKALAQGKQLHACA 100
           T++     GN + A  A + +   ++SH   LD FA          +++L   + +H  A
Sbjct: 24  TIRSLTAAGNHAAALHALSSLSAASSSHSATLDRFALPPAAKSAAALRSLTAVRSIHGAA 83

Query: 101 IALGL--EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
           +   L     P +   L+T YA       A  L +    R  + +N LI+       +  
Sbjct: 84  LRHDLLDGPTPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALCLFRRWLP 143

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMM-DVDFGRVVHS------CIDACHEWSLFV 211
           AL   + M        +FT  SVL AC  +  D+  GR  H+       +D       F 
Sbjct: 144 ALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDER---FA 200

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERD-----AVSWNTMISAYASKGLWKEAFQLFVEM 266
            NAL+SMY + G VD A+ LF  +   D      V+WNTM+S     G   EA ++  +M
Sbjct: 201 FNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDM 260

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
              GV  + +T+ +                                    L ACS +  L
Sbjct: 261 VARGVRPDGVTFAS-----------------------------------ALPACSQLEML 285

Query: 327 KLGKEIHGSAVRGC-YGEYENVRNALITMYSRCKDLRHAYILFKM--TAEKSIITWNSML 383
            LG+E+H   ++         V +AL+ MY+  + +  A ++F M    E+ +  WN+M+
Sbjct: 286 SLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMI 345

Query: 384 SGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
            GY      E++  LF  M   +GV P+  TIA +LP CAR       +  H Y+++R M
Sbjct: 346 CGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGM 405

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
             ++  + N+L+++YAR G +  A+ +F  +  RD V++ +LI G  +QG  R A +L  
Sbjct: 406 -ADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVR 464

Query: 503 EM------------------NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           EM                  ++  + P+++T++ +L  C+       G K+       + 
Sbjct: 465 EMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARG-KEIHGYAVRHA 523

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           +   +   + +VD+Y + G L  ++ +  ++P       W  L+ A  +H   G+G+ A 
Sbjct: 524 LDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NVITWNVLIMAYGMH---GLGDEAI 579

Query: 605 ---EKLLETRPENSGYYVLIANMYAA--TGCWDK-LAKVRTCMRDLGVRKIP 650
              ++++ +          IA + A   +G  D+ L   R+  R+ GV   P
Sbjct: 580 ALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMKRNHGVEPTP 631


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 215/740 (29%), Positives = 363/740 (49%), Gaps = 75/740 (10%)

Query: 5   SSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLE---TLKDFAGRGNLSKAFEAFT 61
           S+R IL G +    E       +QP  N + +  N+LE    LK    +G L KA   F 
Sbjct: 23  SNRYILTGTATECRELIQQPIQEQPAENAYSVH-NMLELNSELKQLVKQGQLCKARYMFD 81

Query: 62  RIR--------ITAASHDVVLDSFAHIIF----------------------CCGKVKALA 91
           ++            A +    DS+  +I                        C     + 
Sbjct: 82  KMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNIC 141

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
            G+ LH  ++  GL  +  +   L+  Y         C + E    R  + W  +I+  V
Sbjct: 142 FGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLV 201

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
             G+  E L  + +M   ++  D+ T+   LKA  +   +  G+ +H+  I    + S F
Sbjct: 202 HAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSF 261

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V N L +MY K G+ D   RLF+KM   D VSW T+IS Y             V+M EE 
Sbjct: 262 VINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTY-------------VQMGEE- 307

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
                                +  +E   RMR      +       + +C+++ A K G+
Sbjct: 308 ---------------------EHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGE 346

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           +IHG  +R       +V N++IT+YS+C  L+ A ++F     K II+W++++S Y+   
Sbjct: 347 QIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGG 406

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
            A+E+      M R G +PN   ++S+L +C  +A L+ GK+ H ++L   + +E  ++ 
Sbjct: 407 YAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHE-AMVH 465

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           ++++ MY++ G V EA  +F+ M   D +++T++I GY   G  + A+ LFE+++   +K
Sbjct: 466 SAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLK 525

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD+V  + VL+AC+H+G+V  G   F  MT++Y I P  EH+ C++DL  RAG L++A+ 
Sbjct: 526 PDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEH 585

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
           II  MP+     +W+TLL AC++H +   G W AE+LL+  P ++G ++ +AN+YAA G 
Sbjct: 586 IIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGR 645

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           W + A +R  M+  GV K  G +WV+  +  + F+  D ++ Q++ I  +L  L+  + D
Sbjct: 646 WKEAAHIRKLMKSKGVIKERGWSWVNVNDQLNAFVAGDQAHPQSEHITTVLKLLSANIGD 705

Query: 691 AGYVVKEEFCSEEEIVEEIG 710
           A    ++E  S  E VE++ 
Sbjct: 706 A----QQEIRSLHEDVEDLA 721


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 203/621 (32%), Positives = 316/621 (50%), Gaps = 80/621 (12%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
            K LHA  +  G  ++  +  +LV  YA+    + +    +    +    WN +IS YV 
Sbjct: 35  AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 94

Query: 153 DGFYAEAL-CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
           +G + EA+ C Y+ +    IR D +T+P VLKACG ++D   GR +H        +W++F
Sbjct: 95  NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVF 151

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V  +L+ MY +FG   +AR LFD M  RD  SWN MIS                      
Sbjct: 152 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMIS---------------------- 189

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
                        G ++ GN    L++L  MR +   ++ V  V                
Sbjct: 190 -------------GLIQNGNAAQALDVLDEMRLEGIKMNFVTVV---------------- 220

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
                          ++    + MY++   L  A+ +F++   K +I+WN++++GY    
Sbjct: 221 ---------------SILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNG 265

Query: 391 CAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL-- 447
            A E+  +++ M     + PN  T  SILP  A V  LQ G + H  +++    N HL  
Sbjct: 266 LASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT---NLHLDV 322

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            +   L+++Y + G++ +A S+F  + +   VT+ ++I+ +GI G     LKLF EM   
Sbjct: 323 FVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE 382

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            +KPDHVT V++LSACSHSG V EG+  F R+   YGI P L+H+ CMVDL GRAG L  
Sbjct: 383 GVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRAGYLEM 441

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A + I  MP  P +++W  LLGAC+IH N  +G++A+++L E   +N GYYVL++N+YA 
Sbjct: 442 AYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 501

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
            G W+ + KVR+  R+ G++K PG + ++       F   + S+ + +EIY  L  LT  
Sbjct: 502 VGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAK 561

Query: 688 MKDAGYVVKEEFCSEEEIVEE 708
           MK  GY+    F  ++  VEE
Sbjct: 562 MKSLGYIPDYSFVLQD--VEE 580



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 196/440 (44%), Gaps = 79/440 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  CG    L  G+++H  A  LG + N  +   L+  Y+ F     A  L ++ 
Sbjct: 120 TFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM 176

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN +IS  +++G  A+AL V  +M+   I+ +  T  S+L             
Sbjct: 177 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP------------ 224

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
                               V MY K G +D A ++F+ +  +D +SWNT+I+ YA  GL
Sbjct: 225 ------------------VFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGL 266

Query: 256 WKEAFQLFVEMQEEGVEV--NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
             EA +++ +M EE  E+  N  TW +I                                
Sbjct: 267 ASEAIEVY-KMMEECKEIIPNQGTWVSI-------------------------------- 293

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L A +HVGAL+ G +IHG  ++        V   LI +Y +C  L  A  LF    +
Sbjct: 294 ---LPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ 350

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +S +TWN+++S +     AE++  LF EM   GV+P++VT  S+L  C+    ++ GK  
Sbjct: 351 ESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGK-- 408

Query: 434 HCY-ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS-VFDLMSRRDEVTYTSLIAGYGIQ 491
            C+ +++       L  +  +V++  R+G +  A   + D+  + D   + +L+    I 
Sbjct: 409 WCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIH 468

Query: 492 GE---GRVAL-KLFEEMNKN 507
           G    G+ A  +LFE  +KN
Sbjct: 469 GNIELGKFASDRLFEVDSKN 488


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 199/623 (31%), Positives = 321/623 (51%), Gaps = 43/623 (6%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L +GK++H   +  GL  +  +   LVT        ++A    +    R  + +N LI+ 
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAA 304

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWS 208
             + G   EA   Y +M+S  +  +  TY S+L AC     ++ G+++HS I +  H   
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           + + NAL+SMY                               A  G   +A +LF  M +
Sbjct: 365 VQIGNALISMY-------------------------------ARCGDLPKARELFYTMPK 393

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                ++I+WN I  G  R  +    + L  +M+++      V  +  L AC++  A   
Sbjct: 394 R----DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYAD 449

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GK IH   +R       ++ NAL+ MY RC  L  A  +F+ T  + +I+WNSM++G+  
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQ 509

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               E +  LF+EM    +EP+ +T AS+L  C     L+ GK+ H  I    +    + 
Sbjct: 510 HGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGL-QLDVN 568

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           L N+L+ MY R G + +A++VF  +  RD +++T++I G   QGE   A++LF +M    
Sbjct: 569 LGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG 628

Query: 509 IKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            +P D  T  ++LSAC+H+GLV+EG + F  M S YG+ P +EH+ C+V L GRA    +
Sbjct: 629 FRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQE 688

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A+ +I +MP+ P +A+W TLLGAC+IH N  + E AA   L+    N   Y+L++N+YAA
Sbjct: 689 AETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAA 748

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
            G WD +AK+R  M   G+RK PG +W++  N+   F+  D S+ +  EIY  L  L+  
Sbjct: 749 AGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVE 808

Query: 688 MKDAGYVVKEEFCSEEEIVEEIG 710
           M++AGY     F   + ++ ++G
Sbjct: 809 MEEAGY-----FPDTQHVLHDLG 826



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 164/584 (28%), Positives = 274/584 (46%), Gaps = 72/584 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C + + L + K++HA  +  G+  +  L   L+  Y       +A  + +  
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN LIS Y + GF  +A  ++++MQ+     +  TY S+L AC    +++ G+
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS  I A ++    V N+L+SMYGK G +  AR++F  +  RD VS+NTM+  YA K 
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 255 LWKEAFQLFVEMQ-----------------------------------EEGVEVNVITWN 279
             KE   LF +M                                    EEG+  ++    
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGT 268

Query: 280 TIAGGCLRTGN-------FKGV------------------------LELLSRMRTQETYL 308
            +   C+R G+       FKG+                         E   RMR+    L
Sbjct: 269 ALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVAL 328

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           +    +  L ACS   AL+ GK IH       +     + NALI+MY+RC DL  A  LF
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELF 388

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               ++ +I+WN++++GY   +   E+  L+++M   GV+P  VT   +L  CA  +   
Sbjct: 389 YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYA 448

Query: 429 HGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            GK  H  ILR  +  N HL   N+L+ MY R G + EA++VF+    RD +++ S+IAG
Sbjct: 449 DGKMIHEDILRSGIKSNGHLA--NALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAG 506

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           +   G    A KLF+EM   +++PD++T  +VLS C +   +  G++   R+T   G+  
Sbjct: 507 HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE-SGLQL 565

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
            +     ++++Y R G L  A+ +   + +    + W  ++G C
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGC 608



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 191/416 (45%), Gaps = 38/416 (9%)

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           V    Q R    D  TY ++L+ C     +   + +H+  ++A     +F+ N L++MY 
Sbjct: 14  VSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYV 73

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K   V  A ++F +M  RD +SWN++IS YA +G  K+AFQLF EMQ  G   N IT+ +
Sbjct: 74  KCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYIS 133

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           I                                   L AC     L+ GK+IH   ++  
Sbjct: 134 I-----------------------------------LTACYSPAELENGKKIHSQIIKAG 158

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           Y     V+N+L++MY +C DL  A  +F   + + ++++N+ML  Y      +E   LF 
Sbjct: 159 YQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFG 218

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M   G+ P+ VT  ++L      + L  GK  H   +   + N  + +  +LV M  R 
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGL-NSDIRVGTALVTMCVRC 277

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G V  AK  F  ++ RD V Y +LIA     G    A + +  M  + +  +  T +++L
Sbjct: 278 GDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSIL 337

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           +ACS S   +E  K      S  G    ++    ++ +Y R G L KA+E+   MP
Sbjct: 338 NACSTSK-ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 211/474 (44%), Gaps = 58/474 (12%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
            A  G+  +AFE + R+R    S  V L+  ++  I+  C   KAL  GK +H+     G
Sbjct: 305 LAQHGHNVEAFEQYYRMR----SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG 360

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   L++ YA       A  L      R  + WN +I+ Y R     EA+ +YK
Sbjct: 361 HSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYK 420

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           QMQS  ++    T+  +L AC        G+++H  I  +  + +  + NAL++MY + G
Sbjct: 421 QMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCG 480

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +  A+ +F+    RD +SWN+MI+ +A  G ++ A++LF EMQ E +E + IT+ ++  
Sbjct: 481 SLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV-- 538

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                            L  C +  AL+LGK+IHG         
Sbjct: 539 ---------------------------------LSGCKNPEALELGKQIHGRITESGLQL 565

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             N+ NALI MY RC  L+ A  +F     + +++W +M+ G        ++  LF +M 
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 404 RSGVE-PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEMY 457
             G   P+  T  SIL  C     +  G     Y +  +M +E+ +L     +  LV + 
Sbjct: 626 NEGFRPPDGSTFTSILSACNHAGLVLEG-----YQIFSSMESEYGVLPTIEHYGCLVGLL 680

Query: 458 ARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            R+ +  EA+++ + M    D   + +L+    I G     + L E    N +K
Sbjct: 681 GRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGN----IALAEHAANNALK 730


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 194/612 (31%), Positives = 324/612 (52%), Gaps = 45/612 (7%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G LS A +    I     S   VL  +A ++  C KV A   G Q+HA  I  GLE +  
Sbjct: 97  GELSGALQLLKSIDPGEISAKPVL--YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 154

Query: 111 LVPKLVTFYASFSL-YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           +   L+T Y      +     + +   ++  + W  +IS YVR G    +L ++ +M + 
Sbjct: 155 VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 214

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVA 228
            +  + FT  +V+KAC E+ D+  GR+ H  +     + +  + +AL+ M+G+   +D A
Sbjct: 215 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDA 274

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE-GVEVNVITWNTIAGGCLR 287
           R+LFD++LE DA+ W ++ISA      + EA + F  MQ + G+  +  T+ T+      
Sbjct: 275 RQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTV------ 328

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        L AC ++G LK GKE+H   +   +     V
Sbjct: 329 -----------------------------LTACGNLGRLKQGKEVHAKVITTGFCGNVVV 359

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            ++L+ MY +C  +  +  +F     K+ ++W+++L GY    C         ++FR   
Sbjct: 360 ESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGY----CQNGDFKSVIQIFRKME 415

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           + +     +IL  CA +A ++ GKE HC  +R+  + + +++ ++LV++YA+ G +  A+
Sbjct: 416 KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRD-VIVESALVDLYAKCGCIEYAQ 474

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           ++FD M  R+ +T+ S+I G+   G G  AL++F +M K  IKPD+++ + +L ACSH G
Sbjct: 475 TIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRG 534

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG++ F  MT  YGI   +EH++CMVDL GRAGLL +A+ +I    +   S++WA L
Sbjct: 535 LVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAAL 594

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC    N  I E  A++++E  P+    YVL+AN+Y A G W+   ++R  M+D GV 
Sbjct: 595 LGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVN 654

Query: 648 KIPGCAWVDAGN 659
           K+PG +W++  N
Sbjct: 655 KMPGKSWIETKN 666



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 212/455 (46%), Gaps = 52/455 (11%)

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-C 200
           P++ ++ L  + G  + AL + K +    I      Y S+L+ C +++  + G  +H+  
Sbjct: 86  PFSKILQL-CKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHV 144

Query: 201 IDACHEWSLFVHNALVSMYGKFG-QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
           I +  E+  FV N+L+++Y K G      R++FD +  +D +SW +MIS Y   G    +
Sbjct: 145 IKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNS 204

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF +M   GVE N  T + +                                   + A
Sbjct: 205 LELFWKMLAYGVEPNAFTLSAV-----------------------------------IKA 229

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           CS +G LKLG+  HG  +   +     + +ALI M+ R   L  A  LF    E   I W
Sbjct: 230 CSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICW 289

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
            S++S  T  D  +E+   F  M R  G+ P+  T  ++L  C  +  L+ GKE H  ++
Sbjct: 290 TSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVI 349

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
               F  ++++ +SLV+MY + G V E++ +FD M  ++ V++++L+ GY   G+ +  +
Sbjct: 350 TTG-FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVI 408

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK---QFERMTSIYGIFPQLEHFACM 555
           ++F +M     K D      +L  C+    V +G++   Q+ R      +  +    + +
Sbjct: 409 QIFRKME----KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVE----SAL 460

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           VDLY + G +  A+ I  +MP       W +++G 
Sbjct: 461 VDLYAKCGCIEYAQTIFDQMP-VRNLITWNSMIGG 494



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 158/309 (51%), Gaps = 6/309 (1%)

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
           ++G   G L+LL  +   E     V     L  C+ V A   G +IH   ++        
Sbjct: 95  KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 154

Query: 347 VRNALITMYSRC-KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           V N+L+T+Y +   D      +F     K +I+W SM+SGY  +     S  LF +M   
Sbjct: 155 VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 214

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           GVEPN  T+++++  C+ + +L+ G+ FH  +L R  F+ + ++ ++L++M+ R+  + +
Sbjct: 215 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRG-FDSNYVIASALIDMHGRNCALDD 273

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACS 524
           A+ +FD +   D + +TS+I+          AL+ F  M ++  + PD  T   VL+AC 
Sbjct: 274 ARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 333

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           + G + +G++   ++ +  G    +   + +VD+YG+ G + +++ I  +MP    S  W
Sbjct: 334 NLGRLKQGKEVHAKVITT-GFCGNVVVESSLVDMYGKCGSVGESQRIFDRMP-IKNSVSW 391

Query: 585 ATLLGA-CQ 592
           + LLG  CQ
Sbjct: 392 SALLGGYCQ 400


>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 204/675 (30%), Positives = 341/675 (50%), Gaps = 54/675 (8%)

Query: 65  ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFS 123
           +T  +   +  +  H++  C   +   Q KQ+HA  +    + ++  L    V+ Y+   
Sbjct: 47  LTTNNDQSLFHNLDHLLRLCLTAQ---QCKQVHAQVLVSDYIYRSGSLAANFVSVYSRLG 103

Query: 124 LYNNACFLVEN------SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFT 177
           L  +A  + E       S++R    WN ++   V  G Y  A  +Y+ M+ R + GD F 
Sbjct: 104 LLLDARNVFETVSLVLWSDLRL---WNSILKANVSHGLYENAFELYRGMRERGLTGDGFI 160

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
            P +L+AC  +      R  HS  I    + +L V N L+++Y K  ++  A  LF +M 
Sbjct: 161 LPLILRACRYLGRFGLCRAFHSQVIQIGLKENLHVANELLTLYPKAARIGDAYNLFVEMP 220

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            R+ +SWN MI  ++ +   + A ++F  MQ E  + + +TW ++     + G F+ V++
Sbjct: 221 VRNRMSWNVMIKGFSQEFDCESAVKIFEWMQREDFKPDEVTWTSLLSCHSQCGKFEDVIK 280

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
               MR   + +   A  +    C+ +GAL +  ++HG  ++G + E    RNALI +Y 
Sbjct: 281 YFHVMRMSASAVSGEALAVFFSVCAELGALSIADKVHGFVIKGGFEECLPSRNALIHVYG 340

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM-------------- 402
           +   ++ A  LF+    K I +WNS+++ +      +E+  LF E+              
Sbjct: 341 KQGKVKDAEQLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFTELEEMDDVCNVKANVV 400

Query: 403 ---------------------FR----SGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
                                FR    S V  N VTI  IL +CA +  L  G+E H ++
Sbjct: 401 TWTSVIKGCNVQGRGDYSLEYFRRMQFSKVLSNSVTICCILSICAELPALNLGREIHGHV 460

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           +R +M ++++L+ N+LV MY + G + E   VF+ +  +D +++ S+I GYG+ G G  A
Sbjct: 461 IRTSM-SDNILVQNALVNMYTKCGLLREGSLVFEAIRDKDLISWNSIIKGYGMHGFGEKA 519

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L +F+ M K+   PD + +VAVLSACSH+GLV +G+K F  M+  +G+ PQ EH+AC+VD
Sbjct: 520 LSMFDRMIKSGCHPDGIALVAVLSACSHAGLVEKGRKIFYSMSKRFGLEPQQEHYACIVD 579

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L GR G L +A EI+  MP  P   +   LL +C++H+N  I E  A +L    PE +G 
Sbjct: 580 LLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNMDIAEIIASQLRVLEPERTGS 639

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           Y+L++N+Y+A G W++ AKVR   +   ++K+ G +W++       F        +   I
Sbjct: 640 YMLLSNIYSAGGRWEESAKVRALAKKKDLKKVSGSSWIELKKKIYKFSSGSIVQSEFASI 699

Query: 678 YPLLGGLTELMKDAG 692
           YP+L  L   M   G
Sbjct: 700 YPVLEDLVSHMVKEG 714


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 194/612 (31%), Positives = 324/612 (52%), Gaps = 45/612 (7%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G LS A +    I     S   VL  +A ++  C KV A   G Q+HA  I  GLE +  
Sbjct: 38  GELSGALQLLKSIDPGEISAKPVL--YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 95

Query: 111 LVPKLVTFYASFSL-YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           +   L+T Y      +     + +   ++  + W  +IS YVR G    +L ++ +M + 
Sbjct: 96  VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 155

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVA 228
            +  + FT  +V+KAC E+ D+  GR+ H  +     + +  + +AL+ M+G+   +D A
Sbjct: 156 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDA 215

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE-GVEVNVITWNTIAGGCLR 287
           R+LFD++LE DA+ W ++ISA      + EA + F  MQ + G+  +  T+ T+      
Sbjct: 216 RQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTV------ 269

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        L AC ++G LK GKE+H   +   +     V
Sbjct: 270 -----------------------------LTACGNLGRLKQGKEVHAKVITTGFCGNVVV 300

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            ++L+ MY +C  +  +  +F     K+ ++W+++L GY    C         ++FR   
Sbjct: 301 ESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGY----CQNGDFKSVIQIFRKME 356

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           + +     +IL  CA +A ++ GKE HC  +R+  + + +++ ++LV++YA+ G +  A+
Sbjct: 357 KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRD-VIVESALVDLYAKCGCIEYAQ 415

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           ++FD M  R+ +T+ S+I G+   G G  AL++F +M K  IKPD+++ + +L ACSH G
Sbjct: 416 TIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRG 475

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG++ F  MT  YGI   +EH++CMVDL GRAGLL +A+ +I    +   S++WA L
Sbjct: 476 LVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAAL 535

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC    N  I E  A++++E  P+    YVL+AN+Y A G W+   ++R  M+D GV 
Sbjct: 536 LGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVN 595

Query: 648 KIPGCAWVDAGN 659
           K+PG +W++  N
Sbjct: 596 KMPGKSWIETKN 607



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 225/487 (46%), Gaps = 61/487 (12%)

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           ++ P    +Y+  +  N    L +N+N     P++ ++ L  + G  + AL + K +   
Sbjct: 4   LMKPLFKRYYSLLTPLN----LSDNTN-----PFSKILQL-CKSGELSGALQLLKSIDPG 53

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG-QVDV 227
            I      Y S+L+ C +++  + G  +H+  I +  E+  FV N+L+++Y K G     
Sbjct: 54  EISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPE 113

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
            R++FD +  +D +SW +MIS Y   G    + +LF +M   GVE N  T + +      
Sbjct: 114 TRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAV------ 167

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        + ACS +G LKLG+  HG  +   +     +
Sbjct: 168 -----------------------------IKACSELGDLKLGRIFHGVVLGRGFDSNYVI 198

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-G 406
            +ALI M+ R   L  A  LF    E   I W S++S  T  D  +E+   F  M R  G
Sbjct: 199 ASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHG 258

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           + P+  T  ++L  C  +  L+ GKE H  ++    F  ++++ +SLV+MY + G V E+
Sbjct: 259 MCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTG-FCGNVVVESSLVDMYGKCGSVGES 317

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + +FD M  ++ V++++L+ GY   G+ +  +++F +M     K D      +L  C+  
Sbjct: 318 QRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGL 373

Query: 527 GLVVEGQK---QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
             V +G++   Q+ R      +  +    + +VDLY + G +  A+ I  +MP       
Sbjct: 374 AAVRQGKEVHCQYIRKGGWRDVIVE----SALVDLYAKCGCIEYAQTIFDQMP-VRNLIT 428

Query: 584 WATLLGA 590
           W +++G 
Sbjct: 429 WNSMIGG 435



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 158/309 (51%), Gaps = 6/309 (1%)

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
           ++G   G L+LL  +   E     V     L  C+ V A   G +IH   ++        
Sbjct: 36  KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 95

Query: 347 VRNALITMYSRC-KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           V N+L+T+Y +   D      +F     K +I+W SM+SGY  +     S  LF +M   
Sbjct: 96  VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 155

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           GVEPN  T+++++  C+ + +L+ G+ FH  +L R  F+ + ++ ++L++M+ R+  + +
Sbjct: 156 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRG-FDSNYVIASALIDMHGRNCALDD 214

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACS 524
           A+ +FD +   D + +TS+I+          AL+ F  M ++  + PD  T   VL+AC 
Sbjct: 215 ARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 274

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           + G + +G++   ++ +  G    +   + +VD+YG+ G + +++ I  +MP    S  W
Sbjct: 275 NLGRLKQGKEVHAKVITT-GFCGNVVVESSLVDMYGKCGSVGESQRIFDRMP-IKNSVSW 332

Query: 585 ATLLGA-CQ 592
           + LLG  CQ
Sbjct: 333 SALLGGYCQ 341


>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g17630
 gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
 gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 731

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 205/675 (30%), Positives = 346/675 (51%), Gaps = 54/675 (8%)

Query: 65  ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHA-CAIALGLEKNPVLVPKLVTFYASFS 123
           +T+ +   +   F H++  C   +   Q +Q+HA   ++  + ++  L   L++ YA   
Sbjct: 47  LTSNNDQSLFHYFDHLLGLCLTAQ---QCRQVHAQVLLSDFIFRSGSLAANLISVYARLG 103

Query: 124 LYNNACFLVEN------SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFT 177
           L  +A  + E       S++R    WN ++   V  G Y  AL +Y+ M+ R + GD + 
Sbjct: 104 LLLDARNVFETVSLVLLSDLRL---WNSILKANVSHGLYENALELYRGMRQRGLTGDGYI 160

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
            P +L+AC  +      R  H+  I    + +L V N L+++Y K G++  A  LF +M 
Sbjct: 161 LPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMP 220

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            R+ +SWN MI  ++ +   + A ++F  MQ E  + + +TW ++     + G F+ VL+
Sbjct: 221 VRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLK 280

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
               MR     +   A  +    C+ + AL + +++HG  ++G + EY   RNALI +Y 
Sbjct: 281 YFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYG 340

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYT---HLDCA--------------------- 392
           +   ++ A  LF+    K I +WNS+++ +     LD A                     
Sbjct: 341 KQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVV 400

Query: 393 ---------------EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
                          ++S   FR+M  S V  N VTI  IL +CA +  L  G+E H ++
Sbjct: 401 TWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPALNLGREIHGHV 460

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           +R +M +E++L+ N+LV MYA+ G + E   VF+ +  +D +++ S+I GYG+ G    A
Sbjct: 461 IRTSM-SENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKA 519

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L +F+ M  +   PD + +VAVLSACSH+GLV +G++ F  M+  +G+ PQ EH+AC+VD
Sbjct: 520 LSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACIVD 579

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L GR G L +A EI+  MP  P   +   LL +C++H+N  I E  A +L    PE +G 
Sbjct: 580 LLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQLSVLEPERTGS 639

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           Y+L++N+Y+A G W++ A VR   +   ++K+ G +W++       F        + + I
Sbjct: 640 YMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIEVKKKKYKFSSGSIVQSEFETI 699

Query: 678 YPLLGGLTELMKDAG 692
           YP+L  L   M   G
Sbjct: 700 YPVLEDLVSHMLKKG 714


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 191/631 (30%), Positives = 329/631 (52%), Gaps = 39/631 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C  V  +  G  +H  A  LG+ +   +   LV  Y+       A  L + +  + 
Sbjct: 305 VIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKN 364

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKAC-GEMMDVDFGRVV 197
            + WN +I  Y ++G +     + ++MQ   ++R +  T  +VL AC GE   +    + 
Sbjct: 365 VVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIH 424

Query: 198 HSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
                        V NA V+ Y K   +D A R+F  M  +   SWN +I A+A  G   
Sbjct: 425 GYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPG 484

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           ++  LF+ M + G++ +  T  ++                                   L
Sbjct: 485 KSLDLFLVMMDSGMDPDRFTIGSL-----------------------------------L 509

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+ +  L+ GKEIHG  +R      E +  +L+++Y +C  +    ++F     KS++
Sbjct: 510 LACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLV 569

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            WN M++G++  +   E+   FR+M   G++P  + +  +L  C++V+ L+ GKE H + 
Sbjct: 570 CWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFA 629

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           L+ A  +E   +  +L++MYA+ G + +++++FD ++ +DE  +  +IAGYGI G G  A
Sbjct: 630 LK-AHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKA 688

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           ++LFE M     +PD  T + VL AC+H+GLV EG K   +M ++YG+ P+LEH+AC+VD
Sbjct: 689 IELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVD 748

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           + GRAG L +A +++ +MP  P S +W++LL +C+ + +  IGE  ++KLLE  P  +  
Sbjct: 749 MLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAEN 808

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           YVL++N+YA  G WD++ KVR  M++ G+ K  GC+W++ G +   FLV D S  ++++I
Sbjct: 809 YVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKI 868

Query: 678 YPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
                 L + +   GY   +  C   E+ EE
Sbjct: 869 QQTWIKLEKKISKIGY-KPDTSCVLHELEEE 898



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 228/493 (46%), Gaps = 43/493 (8%)

Query: 40  LLETLKDFAGRGNLSKAFEAFTR--IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
           +L+ L +    GNL+ A           T +S D+  ++   ++  CG  K +  G+++H
Sbjct: 56  ILQRLHNLCDSGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVH 115

Query: 98  ACAIAL-GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           A   A   L  + VL  +++  Y++    +++  + + +  +    +N L+S Y R+  +
Sbjct: 116 ALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALF 175

Query: 157 AEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215
            +A+ ++ ++ S   +  DNFT P V KAC  + DV+ G  VH               AL
Sbjct: 176 RDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVH---------------AL 220

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
               G F                DA   N +I+ Y   G  + A ++F  M+      N+
Sbjct: 221 ALKAGGFS---------------DAFVGNALIAMYGKCGFVESAVKVFETMRNR----NL 261

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIG-LGACSHVGALKLGKEI 332
           ++WN++   C   G F     +  R+    +E  +  VAT++  + AC+ VG +++G  +
Sbjct: 262 VSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVV 321

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           HG A +    E   V N+L+ MYS+C  L  A  LF M   K++++WN+++ GY+     
Sbjct: 322 HGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDF 381

Query: 393 EESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
                L +EM R   V  N VT+ ++LP C+    L   KE H Y  R     + L+  N
Sbjct: 382 RGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVA-N 440

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           + V  YA+   +  A+ VF  M  +   ++ +LI  +   G    +L LF  M  + + P
Sbjct: 441 AFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDP 500

Query: 512 DHVTMVAVLSACS 524
           D  T+ ++L AC+
Sbjct: 501 DRFTIGSLLLACA 513



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 14/311 (4%)

Query: 288 TGNFKGVLELLSRMRTQETYLDS----VATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           +GN    L LL       T   S     A  I L AC H   + +G+++H + V   +  
Sbjct: 66  SGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVH-ALVSASHKL 124

Query: 344 YENV--RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
             +V     +I MYS C     +  +F    EK +  +N++LSGY+      ++  LF E
Sbjct: 125 RNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLE 184

Query: 402 MFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +   + + P+  T+  +   CA VA+++ G+  H   L+   F++   + N+L+ MY + 
Sbjct: 185 LLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSD-AFVGNALIAMYGKC 243

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM---NKNQIKPDHVTMV 517
           G V  A  VF+ M  R+ V++ S++      G       +F+ +    +  + PD  TMV
Sbjct: 244 GFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMV 303

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
            V+ AC+  G V  G      +    GI  ++     +VD+Y + G L +A+ +   M  
Sbjct: 304 TVIPACAAVGEVRMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALF-DMNG 361

Query: 578 TPTSAMWATLL 588
                 W T++
Sbjct: 362 GKNVVSWNTII 372


>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
          Length = 702

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 194/600 (32%), Positives = 320/600 (53%), Gaps = 47/600 (7%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           CG+   +  G++ H   + +GL  +  +   L+  YA     ++A  + +          
Sbjct: 123 CGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATC 182

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N LIS Y R+GF+ +A  V+ Q+ +   R +++TY ++L  CG +  +  G+ +H+ +  
Sbjct: 183 NCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVK 242

Query: 204 CHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
               S   V NAL+++Y K G ++ A  +F+ + +R+ +SW   I+ +   G +K+A + 
Sbjct: 243 MQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQ 302

Query: 263 FVEMQEEGVEVNVITWNTIAGGC----------LRTGNFKGVLELLS------------- 299
           F  M+E G+E N  T++ +   C            + N  G   L+S             
Sbjct: 303 FSMMRESGIEPNEFTFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNK 362

Query: 300 --RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
              +R  +  L S+     L AC H+   + G+ +H   ++  +     + +ALI MYS+
Sbjct: 363 PTSLRPNQFVLPSI-----LKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSK 417

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           C  +  A  +F      ++++WN++++G             F +M   G  P+ VTI+S+
Sbjct: 418 CGHVEKACRVFDWIP--NVVSWNTLIAG-------------FSQMLDQGFCPSSVTISSL 462

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP C  VANL+HGKE H Y +   +  + + + ++LV+MYA+ G + EAK +F +M  R+
Sbjct: 463 LPACTNVANLRHGKEIHGYAMVIGV-EKDVYVRSALVDMYAKCGYISEAKILFYMMPERN 521

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            VT+ SLI GY   G    A++LF +M ++  K DH+T  AVL+ACSH+G+V  G+  F 
Sbjct: 522 TVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFR 581

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
           +M   Y I P+LEH+ACMVDL GRAG L++A ++I  MP  P   +W  LLGAC+ H N 
Sbjct: 582 KMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNI 641

Query: 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDA 657
            + E AAE L E  PE+ G  +L++N+YA  G W   AK++  M+     K PGC+W++A
Sbjct: 642 ELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIEA 701



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 206/473 (43%), Gaps = 55/473 (11%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G   +AF+ F +I       +    +++ ++  CG + A+ +GKQLHA  + +
Sbjct: 186 ISAYARNGFFVQAFQVFMQIGNMGTRPNHY--TYSTMLAVCGTISAIQEGKQLHAHVVKM 243

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
                  +   L+T Y+   +   A  + EN   R  + W   I+ + + G + +AL  +
Sbjct: 244 QYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQF 303

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-----RVVHSCIDACHEWSLFVHNALV-- 216
             M+   I  + FT+  VL +CG     D G     R   +     H  S+F+   ++  
Sbjct: 304 SMMRESGIEPNEFTFSIVLASCG----CDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEE 359

Query: 217 ---------------SMYGKFGQVDVARR-------LFDKMLERDAVSWNTMISAYASKG 254
                          S+    G +   R        +     E DA   + +I  Y+  G
Sbjct: 360 GNKPTSLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCG 419

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             ++A ++F  +       NV++WNT+  G              S+M  Q     SV   
Sbjct: 420 HVEKACRVFDWIP------NVVSWNTLIAG-------------FSQMLDQGFCPSSVTIS 460

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC++V  L+ GKEIHG A+     +   VR+AL+ MY++C  +  A ILF M  E+
Sbjct: 461 SLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER 520

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           + +TWNS++ GY +     E+  LF +M  S  + +++T  ++L  C+    ++ G+   
Sbjct: 521 NTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLF 580

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIA 486
             +  +      L  +  +V++  R+GK+ EA  +   M    D+  + +L+ 
Sbjct: 581 RKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLG 633



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 113/207 (54%), Gaps = 1/207 (0%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  C   G ++LG+  H   V+   G  E V  +LI MY++C ++  A  ++        
Sbjct: 120 LSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDA 179

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
            T N ++S Y       ++  +F ++   G  PN+ T +++L +C  ++ +Q GK+ H +
Sbjct: 180 ATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAH 239

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           +++    +E   + N+L+ +Y++ G + EA+ VF+ + +R+ +++T+ I G+   G+ + 
Sbjct: 240 VVKMQYLSE-TAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKK 298

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           ALK F  M ++ I+P+  T   VL++C
Sbjct: 299 ALKQFSMMRESGIEPNEFTFSIVLASC 325



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 11/224 (4%)

Query: 360 DLRHAYILFKMTAEK-SIITWNSMLSGYTH--LDCAEESAFLFREM-----FRSGVEPNY 411
           DL +A ILF+ T ++  +    S  SG T    +  +E+ F  R       F  G  P+ 
Sbjct: 55  DLNNACILFEKTPKRIGVSITESHRSGCTDDPEEGVKEAGFFTRNETPHVEFGGGF-PHR 113

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
             + S L  C R   ++ G+ +HC++++  + ++  +   SL++MYA+ G+V  A  V+D
Sbjct: 114 QYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVC-TSLIDMYAKCGEVDSAVRVYD 172

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            M+  D  T   LI+ Y   G    A ++F ++     +P+H T   +L+ C     + E
Sbjct: 173 KMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQE 232

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           G KQ            +      ++ LY + G++ +A+ +   +
Sbjct: 233 G-KQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENL 275



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 3/182 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + + ++  C  V  L  GK++H  A+ +G+EK+  +   LV  YA     + A  L    
Sbjct: 458 TISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMM 517

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN LI  Y   G+  EA+ ++ QM+    + D+ T+ +VL AC     V+ G 
Sbjct: 518 PERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGE 577

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYAS 252
            +   +   +  E  L  +  +V + G+ G++  A  L   M +E D   W  ++ A  +
Sbjct: 578 SLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRN 637

Query: 253 KG 254
            G
Sbjct: 638 HG 639


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 195/634 (30%), Positives = 333/634 (52%), Gaps = 13/634 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I  C   + L Q KQLHA  +   L  +  L  KL+TFY+  +    A  + +  
Sbjct: 36  AFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKI 95

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI---RGDNFTYPSVLKACGEMM-DV 191
             +    WN ++  Y     +   L +   +        + DNFT   VLKA   +  D 
Sbjct: 96  LDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDS 155

Query: 192 DFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
              + V  C    H  +  +FV NAL++ Y +  +  +AR LFD+M +RD VSWN+MI+ 
Sbjct: 156 ILAKEVQ-CFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAG 214

Query: 250 YASKGLWKEAFQLFVEMQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
           Y+  G +++  +L+ +M +  G+  N +T  ++   C +T +    +++   +  ++  +
Sbjct: 215 YSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEM 274

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           D  A    +G  +  G+L   +E+          + E    ++++ Y     +  A  LF
Sbjct: 275 DVSAHNSLIGLYAKCGSLDYARELFNEMSN----KDEVTYGSIVSGYMTHGFVDKAMDLF 330

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
           +      + TWN+++SG    +C E    L +EM   G  PN VT++SILP  +  +NL+
Sbjct: 331 REMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLK 390

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GK  H Y +R   +  ++ +  S+++ YA+ G +  A+ VFD    R  + +T++I+ Y
Sbjct: 391 GGKAIHAYAIRNG-YAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAY 449

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G+   AL+LF +M  N  +PD VT  AVL+AC+HSG+V E  K F+ M   YG  P 
Sbjct: 450 SAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPC 509

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH+ACMV +  RAG+L++A E I KMP  P + +W  LL    +  +  +G++  + L 
Sbjct: 510 VEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLF 569

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
              PEN+G YV++AN+Y+  G W++   +R  M+ +G++KIPG +W++       F+  D
Sbjct: 570 NMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIETSGGLRSFIARD 629

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSE 702
            S+ +++EIY +L GL  LM++ GY +++E   E
Sbjct: 630 VSSERSEEIYGMLEGLLGLMREEGYTLQDELDEE 663


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 192/625 (30%), Positives = 326/625 (52%), Gaps = 49/625 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A +   C  +  L+  +QLHA AI      + V+   +V  YA       A  LV+  
Sbjct: 239 AYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYA------KADSLVDAR 292

Query: 136 NIRYPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
              + LP       N ++   VR G  AEAL +++ M    I  D  +   V  AC E+ 
Sbjct: 293 RAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVK 352

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
               G  VH   I +  +  + V NA++ +YGK   +  A  +F +M +RD+VSWN +I+
Sbjct: 353 GYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIA 412

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
           A      +++      EM   G+E +  T+ ++                           
Sbjct: 413 ALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSV--------------------------- 445

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   L AC+ + +L+ G  +HG A++   G    V + ++ MY +C  +  A  L 
Sbjct: 446 --------LKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLH 497

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                + +++WNS++SG++    +EE+   F EM   GV+P++ T A++L  CA +A ++
Sbjct: 498 DRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIE 557

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GK+ H  I+++ M  +  +  ++LV+MYA+ G +P++  +F+   + D V++ ++I GY
Sbjct: 558 LGKQIHGQIIKQEMLGDEYI-SSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGY 616

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            + G+G  AL++FE M +  + P+H T VAVL ACSH GL+ +G + F  MTS Y + PQ
Sbjct: 617 ALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQ 676

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           LEHFACMVD+ GR+    +A + I  MP    + +W TLL  C+I ++  + E AA  +L
Sbjct: 677 LEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVL 736

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
              P++S  Y+L++N+YA +G W  +++ R  MR   ++K PGC+W++  +    FL  D
Sbjct: 737 RLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLAGD 796

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGY 693
             + +++E+Y +L  L   MK +GY
Sbjct: 797 KVHPRSREVYEMLNNLIVEMKLSGY 821



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 220/495 (44%), Gaps = 50/495 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  CG ++ LA G Q+HA A+  GLE +      LV  Y       +A       
Sbjct: 138 TLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGM 197

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W   I+  V++  Y   L ++ QMQ   +      Y SV ++C  +  +   R
Sbjct: 198 GERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+  I         V  A+V +Y K   +  ARR F  +      + N M+      G
Sbjct: 258 QLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTG 317

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L  EA QLF  M   G+  +V++ + +                                 
Sbjct: 318 LGAEALQLFQFMTRSGIGFDVVSLSGV--------------------------------- 344

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
               AC+ V     G ++H  A++  +     VRNA++ +Y +CK L  AY++F+   ++
Sbjct: 345 --FSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQR 402

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             ++WN++++     +C E++     EM R G+EP+  T  S+L  CA + +L++G   H
Sbjct: 403 DSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVH 462

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              ++  +      + +++V+MY + G + EA+ + D +  ++ V++ S+I+G+ +  + 
Sbjct: 463 GKAIKSGL-GLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQS 521

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-- 552
             A K F EM    +KPDH T   VL  C++   +  G++       I+G   + E    
Sbjct: 522 EEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQ-------IHGQIIKQEMLGD 574

Query: 553 ----ACMVDLYGRAG 563
               + +VD+Y + G
Sbjct: 575 EYISSTLVDMYAKCG 589



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 216/470 (45%), Gaps = 41/470 (8%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           ++A + F  +  +    DVV  S + +   C +VK   QG Q+H  AI  G + +  +  
Sbjct: 320 AEALQLFQFMTRSGIGFDVV--SLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRN 377

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            ++  Y        A  + +    R  + WN +I+   ++  Y + +    +M    +  
Sbjct: 378 AILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEP 437

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           D+FTY SVLKAC  +  +++G VVH   I +      FV + +V MY K G +  A++L 
Sbjct: 438 DDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLH 497

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D++  ++ VSWN++IS ++     +EA + F EM + GV+ +  T+ T+           
Sbjct: 498 DRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATV----------- 546

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                                   L  C+++  ++LGK+IHG  ++      E + + L+
Sbjct: 547 ------------------------LDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLV 582

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MY++C ++  + ++F+   +   ++WN+M+ GY       E+  +F  M ++ V PN+ 
Sbjct: 583 DMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHA 642

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFD 471
           T  ++L  C+ V  L  G  +   +  R      L  +  +V++  RS    EA K +  
Sbjct: 643 TFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRS 702

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           +    D V + +L++   I+ +  VA       N  ++ PD  ++  +LS
Sbjct: 703 MPLEADAVIWKTLLSICKIRQDVEVAET--AASNVLRLDPDDSSVYILLS 750



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 184/387 (47%), Gaps = 11/387 (2%)

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           + FV N L+ MY + G    AR +FD M  RD VSWNTM++AYA  G    A  LF  M 
Sbjct: 38  TTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMP 97

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           +     +V++WN +  G  + G F+  + L   M  +    D     + L AC  +  L 
Sbjct: 98  DP----DVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLA 153

Query: 328 LGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           LG +IH  AV+   G   +VR  +AL+ MY +C+ L  A   F    E++ ++W + ++G
Sbjct: 154 LGVQIHAVAVK--TGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAG 211

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
               +       LF +M R G+  +    AS+   CA +  L   ++ H + ++   F+ 
Sbjct: 212 CVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNK-FSA 270

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
             ++  ++V++YA++  + +A+  F  +         +++ G    G G  AL+LF+ M 
Sbjct: 271 DRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMT 330

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           ++ I  D V++  V SAC+     ++G  Q   +    G    +     ++DLYG+   L
Sbjct: 331 RSGIGFDVVSLSGVFSACAEVKGYLQG-LQVHCLAIKSGFDVDVCVRNAILDLYGKCKAL 389

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQ 592
            +A  +  +M     S  W  ++ A +
Sbjct: 390 VEAYLVFQEME-QRDSVSWNAIIAALE 415



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 195/438 (44%), Gaps = 50/438 (11%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN L+S Y + G + +++ +  +M  R +  D  T   +LKACG + D+  G  +H+ 
Sbjct: 102 VSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAV 161

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    E  +   +ALV MYGK   ++ A R F  M ER++VS                 
Sbjct: 162 AVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVS----------------- 204

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
                             W     GC++   +   LEL  +M+     +   A      +
Sbjct: 205 ------------------WGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRS 246

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +  L   +++H  A++  +     V  A++ +Y++   L  A   F      ++   
Sbjct: 247 CAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQAC 306

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+ G        E+  LF+ M RSG+  + V+++ +   CA V     G + HC  ++
Sbjct: 307 NAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIK 366

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              F+  + + N+++++Y +   + EA  VF  M +RD V++ ++IA           + 
Sbjct: 367 SG-FDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIA 425

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHF--A 553
              EM +  ++PD  T  +VL AC+       G +  E  + ++G   +    L+ F  +
Sbjct: 426 YLNEMLRYGMEPDDFTYGSVLKACA-------GLQSLEYGSVVHGKAIKSGLGLDAFVSS 478

Query: 554 CMVDLYGRAGLLNKAKEI 571
            +VD+Y + G++ +A+++
Sbjct: 479 TVVDMYCKCGMITEAQKL 496



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 11/298 (3%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N ++T Y+   D   A  LF    +  +++WN++LSGY       +S  L  EM R GV 
Sbjct: 74  NTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVA 133

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+  T+A +L  C  + +L  G + H   ++  +    +   ++LV+MY +   + +A  
Sbjct: 134 PDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGL-EMDVRAGSALVDMYGKCRSLEDALR 192

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
            F  M  R+ V++ + IAG     +    L+LF +M +  +        +V  +C+ +  
Sbjct: 193 FFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCA-AIT 251

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            +   +Q                   +VD+Y +A  L  A+     +P     A  A ++
Sbjct: 252 CLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMV 311

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           G  +    TG+G  A +          G+ V+     + +G +   A+V+  ++ L V
Sbjct: 312 GLVR----TGLGAEALQLFQFMTRSGIGFDVV-----SLSGVFSACAEVKGYLQGLQV 360


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 198/646 (30%), Positives = 329/646 (50%), Gaps = 41/646 (6%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  KA E F ++ +     D V    A  +  C ++ +L  GKQ+H  AI     ++  
Sbjct: 234 GDYFKALELFVQMLVDEVKFDCVTMLVA--VQACAELGSLKLGKQIHQLAIKFEFVEDLY 291

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           ++  L+  Y++     ++  L E+   R    WN +IS Y   G + EA+ ++ +MQS  
Sbjct: 292 ILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEG 351

Query: 171 IRGDNFTYPSVLKACGEMMD-VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
           ++ D  T   +L  C E+   +  G+ +H+  I +       + NAL+SMY +   V+  
Sbjct: 352 VKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESV 411

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           +++FD+M                 KG                  V++I+WNT+     R 
Sbjct: 412 QKIFDRM-----------------KG------------------VDIISWNTMILALARN 436

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                  EL  RMR  E   +S   +  L AC  V  L  G+ IHG  ++      + +R
Sbjct: 437 TLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLR 496

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
            AL  MY  C D   A  LF+   ++ +I+WN+M++ Y   + A ++  LF  M  S  E
Sbjct: 497 TALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMI-SEAE 555

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAK 467
           PN VTI ++L     +A L  G+  H Y+ RR       L L N+ + MYAR G +  A+
Sbjct: 556 PNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAE 615

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           ++F  + +R+ +++ ++IAGYG+ G G  A+  F +M ++  +P+ VT V+VLSACSHSG
Sbjct: 616 NIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSG 675

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            +  G + F  M   + + P+L H++C+VDL  R G +++A+E I  MP  P +++W  L
Sbjct: 676 FIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRAL 735

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L +C+ + +    +   EKL +  P N+G YVL++N+YA  G W ++ ++RT +++ G+R
Sbjct: 736 LSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLR 795

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           K PG +W+   N    F   D S+ Q+ +IY  L  L   M++ GY
Sbjct: 796 KPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRETGY 841



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 210/447 (46%), Gaps = 40/447 (8%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C    A+ +GK +H       L  +  +   +V FY       +A  + +  + R 
Sbjct: 59  VLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRD 118

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN ++  YV  G Y EA+ + ++M    +R ++ T  ++L AC    ++  GR VH 
Sbjct: 119 VVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHG 178

Query: 200 -CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            C+ +   + +  V  AL+  Y +F  + V   LFD M+ R                   
Sbjct: 179 YCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVR------------------- 218

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                           N+++WN +  G    G++   LEL  +M   E   D V  ++ +
Sbjct: 219 ----------------NIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAV 262

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+ +G+LKLGK+IH  A++  + E   + NAL+ MYS    L  ++ LF+    +   
Sbjct: 263 QACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAP 322

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN-LQHGKEFHCY 436
            WNSM+S Y    C EE+  LF  M   GV+ +  T+  +L +C  +A+ L  GK  H +
Sbjct: 323 LWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAH 382

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           +++  M  +   L N+L+ MY     V   + +FD M   D +++ ++I           
Sbjct: 383 VIKSGMRIDA-SLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQ 441

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           A +LFE M +++IKP+  T++++L+AC
Sbjct: 442 ACELFERMRESEIKPNSYTIISILAAC 468



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 207/467 (44%), Gaps = 47/467 (10%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHD---VVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +A  G   +A + F R++      D   VV+     +  C      L +GK LHA  I  
Sbjct: 331 YAAFGCHEEAMDLFIRMQSEGVKKDERTVVI----MLSMCEELASGLLKGKSLHAHVIKS 386

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G+  +  L   L++ Y   +   +   + +       + WN +I    R+   A+A  ++
Sbjct: 387 GMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELF 446

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           ++M+   I+ +++T  S+L AC ++  +DFGR +H   +    E +  +  AL  MY   
Sbjct: 447 ERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNC 506

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G    AR LF+   +RD +SWN MI++Y       +A  LF  M                
Sbjct: 507 GDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRM---------------- 550

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY- 341
                                 E   +SV  +  L + +H+  L  G+ +H    R  + 
Sbjct: 551 --------------------ISEAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFS 590

Query: 342 -GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
            G   ++ NA ITMY+RC  L+ A  +FK   +++II+WN+M++GY       ++   F 
Sbjct: 591 LGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFS 650

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M   G  PN VT  S+L  C+    ++ G +    +++       L+ ++ +V++ AR 
Sbjct: 651 QMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARG 710

Query: 461 GKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           G + EA+   D M    D   + +L++      + + A  +FE+++K
Sbjct: 711 GCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDK 757



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 184/397 (46%), Gaps = 41/397 (10%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           I+ P  WN +I            L  Y QM+S  +  +N T P VLKAC     V+ G+ 
Sbjct: 15  IKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKS 74

Query: 197 VHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H  I        + V  A+V  Y K G V+ AR +FD M +RD V WN M+  Y     
Sbjct: 75  IHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGY----- 129

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                               + W     GC     ++  + L+  M  +    +S   V 
Sbjct: 130 --------------------VGW-----GC-----YEEAMLLVREMGRENLRPNSRTMVA 159

Query: 316 GLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
            L AC     L+LG+ +HG  +R G +    +V  ALI  Y R  D+R   +LF +   +
Sbjct: 160 LLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVR 218

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           +I++WN+M+SGY  +    ++  LF +M    V+ + VT+   +  CA + +L+ GK+ H
Sbjct: 219 NIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIH 278

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              ++   F E L + N+L+ MY+ +G +  +  +F+ +  RD   + S+I+ Y   G  
Sbjct: 279 QLAIKFE-FVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCH 337

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSH--SGLV 529
             A+ LF  M    +K D  T+V +LS C    SGL+
Sbjct: 338 EEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLL 374



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 155/313 (49%), Gaps = 3/313 (0%)

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           WN++        N + +L   ++M +     ++    + L AC+   A++ GK IH S  
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 80

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
                +   V  A++  Y +C  +  A  +F   +++ ++ WN+M+ GY    C EE+  
Sbjct: 81  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 140

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           L REM R  + PN  T+ ++L  C   + L+ G+  H Y LR  MF+ +  +  +L+  Y
Sbjct: 141 LVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY 200

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
            R   +     +FDLM  R+ V++ ++I+GY   G+   AL+LF +M  +++K D VTM+
Sbjct: 201 LRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTML 259

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
             + AC+  G +  G KQ  ++   +     L     ++++Y   G L  + ++   +P 
Sbjct: 260 VAVQACAELGSLKLG-KQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVP- 317

Query: 578 TPTSAMWATLLGA 590
              + +W +++ A
Sbjct: 318 NRDAPLWNSMISA 330


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 191/625 (30%), Positives = 325/625 (52%), Gaps = 49/625 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A     C  +  L+  +QLHA AI      + V+   +V  YA       A  LV+  
Sbjct: 254 AYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYA------KAGNLVDAR 307

Query: 136 NIRYPLPW------NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
                LP       N ++   VR G  AEA+ +++ M    +  D  +   V  AC E+ 
Sbjct: 308 RAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVK 367

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
               G  VH   + +  +  + V NA++ +YGK   +  A  +F +M +RD+VSWN +I+
Sbjct: 368 GYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIA 427

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
           A      +++      EM   G+E +  T+ ++                           
Sbjct: 428 ALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSV--------------------------- 460

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   L AC+ + +L+ G  +HG A++   G    V + ++ MY +C  +  A  L 
Sbjct: 461 --------LKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLH 512

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                + +++WNS++SG++    +EE+   F EM   GV+P++ T A++L  CA +A ++
Sbjct: 513 DRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIE 572

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GK+ H  I+++ M  +  +  ++LV+MYA+ G +P++  +F+   + D V++ ++I GY
Sbjct: 573 LGKQIHGQIIKQEMLGDEYI-SSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGY 631

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            + G+G  AL++FE M +  + P+H T VAVL ACSH GL+ +G + F  MTS Y + PQ
Sbjct: 632 ALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQ 691

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           LEHFACMVD+ GR+    +A E I  MP    + +W TLL  C+I ++  + E AA  +L
Sbjct: 692 LEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVL 751

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
              P+++  Y+L++N+YA +G W  +++ R  MR   +RK PGC+W++  +    FLV D
Sbjct: 752 RLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQSEMHGFLVGD 811

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGY 693
             + +++E+Y +L  L   MK +GY
Sbjct: 812 KVHPRSKEVYEMLNSLIGEMKLSGY 836



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 225/501 (44%), Gaps = 52/501 (10%)

Query: 72  VVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           V LD  + A ++  CG +  LA G Q+HA A+  GLE +      LV  Y      ++A 
Sbjct: 147 VALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDAL 206

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
                   R  + W   I+  V++  Y   + ++ QMQ   +      Y S  ++C  M 
Sbjct: 207 RFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMP 266

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
            +   R +H+  I         V  A+V +Y K G +  ARR F  +   +  + N M+ 
Sbjct: 267 CLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMV 326

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
                GL  EA QLF  M   GV  +VI+ + +                           
Sbjct: 327 GLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGV--------------------------- 359

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                     AC+ V     G ++H  AV+  +     VRNA++ +Y +CK L  AY++F
Sbjct: 360 --------FSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVF 411

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
           +   ++  ++WN++++     +C E++     EM RSG+EP+  T  S+L  CA + +L+
Sbjct: 412 QEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLE 471

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
           +G   H   ++  +      + +++V+MY + G + EA+ + D +  ++ V++ S+I+G+
Sbjct: 472 YGLVVHGKAIKSGL-GLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGF 530

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            +  +   A + F EM    +KPDH T   VL  C++   +  G++       I+G   +
Sbjct: 531 SLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQ-------IHGQIIK 583

Query: 549 LEHF------ACMVDLYGRAG 563
            E        + +VD+Y + G
Sbjct: 584 QEMLGDEYISSTLVDMYAKCG 604



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 215/470 (45%), Gaps = 41/470 (8%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           ++A + F  +  +    DV+  S + +   C +VK   QG Q+H  A+  G + +  +  
Sbjct: 335 AEAMQLFQFMTRSGVGFDVI--SLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRN 392

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            ++  Y        A  + +    R  + WN +I+   ++  Y + +    +M    +  
Sbjct: 393 AILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEP 452

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           D+FTY SVLKAC  +  +++G VVH   I +      FV + +V MY K G +  A++L 
Sbjct: 453 DDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLH 512

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D++  ++ VSWN++IS ++     +EA + F EM + GV+ +  T+ T+           
Sbjct: 513 DRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATV----------- 561

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                                   L  C+++  ++LGK+IHG  ++      E + + L+
Sbjct: 562 ------------------------LDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLV 597

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MY++C ++  + ++F+   +   ++WN+M+ GY       E+  +F  M R+ V PN+ 
Sbjct: 598 DMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHA 657

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T  ++L  C+ V  L  G ++   +  R      L  +  +V++  RS    EA      
Sbjct: 658 TFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRS 717

Query: 473 MS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           M    D V + +L++   I+ +  VA       N  ++ PD  ++  +LS
Sbjct: 718 MPIEADAVVWKTLLSICKIRQDVEVAET--AASNVLRLDPDDASVYILLS 765



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 186/387 (48%), Gaps = 11/387 (2%)

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           + FV N L+ MY + G    A  +FD M  RD VSWNTM++AY   G    A  LF  M 
Sbjct: 53  TTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMP 112

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           +     +V++WNT+  G  + G F+  + L   M  +   LD     + L +C  +  L 
Sbjct: 113 DP----DVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLA 168

Query: 328 LGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           LG +IH  AV+   G   +VR  +AL+ MY +C+ L  A   F    E++ ++W + ++G
Sbjct: 169 LGVQIHALAVK--TGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAG 226

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
               +       LF +M R G+  +    AS    CA +  L   ++ H + ++  +F+ 
Sbjct: 227 CVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKN-VFSS 285

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
             ++  ++V++YA++G + +A+  F  +   +  T  +++ G    G G  A++LF+ M 
Sbjct: 286 DRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMT 345

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           ++ +  D +++  V SAC+      +G  Q   +    G    +     ++DLYG+   L
Sbjct: 346 RSGVGFDVISLSGVFSACAEVKGYFQG-LQVHCLAVKSGFDVDVCVRNAILDLYGKCKAL 404

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQ 592
            +A  +  +M     S  W  ++ A +
Sbjct: 405 VEAYLVFQEMEQRD-SVSWNAIIAALE 430



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 197/439 (44%), Gaps = 52/439 (11%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN LIS Y + G +  ++ +  +M  R +  D  T   +LK+CG + D+  G  +H+ 
Sbjct: 117 VSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHAL 176

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    E  +   +ALV MYGK   +D A R F  M ER++VS                 
Sbjct: 177 AVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVS----------------- 219

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
                             W     GC++   +   +EL  +M+     +   A      +
Sbjct: 220 ------------------WGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRS 261

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +  L   +++H  A++  +     V  A++ +Y++  +L  A   F      ++ T 
Sbjct: 262 CAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETC 321

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+ G        E+  LF+ M RSGV  + ++++ +   CA V     G + HC  ++
Sbjct: 322 NAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVK 381

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              F+  + + N+++++Y +   + EA  VF  M +RD V++ ++IA           + 
Sbjct: 382 SG-FDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIA 440

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACS-----HSGLVVEGQKQFERMTSIYGIFPQLEHF-- 552
              EM ++ ++PD  T  +VL AC+       GLVV G+     + S  G    L+ F  
Sbjct: 441 HLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKA----IKSGLG----LDAFVS 492

Query: 553 ACMVDLYGRAGLLNKAKEI 571
           + +VD+Y + G + +A+++
Sbjct: 493 STVVDMYCKCGAITEAQKL 511



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 130/320 (40%), Gaps = 41/320 (12%)

Query: 320 CSHVG--ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
           C+  G  AL  G+  H   +   +     V N L+ MY+RC    HA+ +F     +  +
Sbjct: 27  CASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTV 86

Query: 378 TWNSMLSGYTHLDCAEESAFLF-------------------------------REMFRSG 406
           +WN+ML+ Y H    + +A LF                                EM R G
Sbjct: 87  SWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRG 146

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           V  +  T+A +L  C  + +L  G + H   ++  +  + +   ++LV+MY +   + +A
Sbjct: 147 VALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETD-VRAGSALVDMYGKCRSLDDA 205

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
              F  M  R+ V++ + IAG     +    ++LF +M +  +        +   +C+  
Sbjct: 206 LRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAM 265

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
             +   ++      +I  +F         +VD+Y +AG L  A+     +P+       A
Sbjct: 266 PCLSTARQLHAH--AIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNA 323

Query: 586 TLLGACQIHRNTGIGEWAAE 605
            ++G  +    TG+G  A +
Sbjct: 324 MMVGLVR----TGLGAEAMQ 339


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 200/620 (32%), Positives = 325/620 (52%), Gaps = 47/620 (7%)

Query: 96  LHACAIALGLEKNPVLVP--KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           LH    +  L + P +     L+  YA  SL + A  + +       + +N LI+ Y   
Sbjct: 60  LHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADR 119

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVH 212
           G     L ++++++  R+  D FT   V+ ACG+  DV   R +H  +  C H+    V+
Sbjct: 120 GECGPTLRLFEEVRELRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVN 177

Query: 213 NALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           NA+++ Y + G +  ARR+F +M E   RD VSWN MI A        EA  LF EM   
Sbjct: 178 NAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRR 237

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G++V++ T  ++                        T    V  ++G            G
Sbjct: 238 GLKVDMFTMASVL-----------------------TAFTCVKDLVG------------G 262

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCK-DLRHAYILFKMTAEKSIITWNSMLSGYT- 387
           ++ HG  ++  +    +V + LI +YS+C   +     +F+      ++ WN+M+SG++ 
Sbjct: 263 RQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSL 322

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
           + D +E+  + FREM R+G  P+  +   +   C+ +++   GK+ H   ++  +    +
Sbjct: 323 YEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRV 382

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N+LV MY++ G V +A+ VFD M   + V+  S+IAGY   G    +L+LFE M + 
Sbjct: 383 SVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEK 442

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            I P+ +T +AVLSAC H+G V EGQK F  M   + I P+ EH++CM+DL GRAG L +
Sbjct: 443 DIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKE 502

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A+ II  MP+ P S  WATLLGAC+ H N  +   AA + L   P N+  YV+++NMYA+
Sbjct: 503 AERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYAS 562

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
              W++ A V+  MR+ GV+K PGC+W++       F+ +DTS+   +EI+  +G + + 
Sbjct: 563 AARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKK 622

Query: 688 MKDAGYV--VKEEFCSEEEI 705
           MK AGYV  ++     +EE+
Sbjct: 623 MKQAGYVPDIRWALVKDEEV 642



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 203/422 (48%), Gaps = 13/422 (3%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           T+ ++LKAC    D+  G+++H+    +    S ++ N    +Y K G +  A+  F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
              +  S+NT+I+AYA   L   A ++F E+ +     +++++NT+       G     L
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQP----DIVSYNTLIAAYADRGECGPTL 126

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            L   +R     LD       + AC     + L +++H   V   +  Y +V NA++  Y
Sbjct: 127 RLFEEVRELRLGLDGFTLSGVITACG--DDVGLVRQLHCFVVVCGHDCYASVNNAVLACY 184

Query: 356 SRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
           SR   L  A  +F+   E   +  ++WN+M+          E+  LFREM R G++ +  
Sbjct: 185 SRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMF 244

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-SGKVPEAKSVFD 471
           T+AS+L     V +L  G++FH  +++   F+ +  + + L+++Y++ +G + E + VF+
Sbjct: 245 TMASVLTAFTCVKDLVGGRQFHGMMIKSG-FHGNSHVGSGLIDLYSKCAGSMVECRKVFE 303

Query: 472 LMSRRDEVTYTSLIAGYGIQGE-GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
            ++  D V + ++I+G+ +  +     L  F EM +N  +PD  + V V SACS+     
Sbjct: 304 EITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPS 363

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G++           + ++     +V +Y + G ++ A+ +   MP   T ++ + + G 
Sbjct: 364 LGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGY 423

Query: 591 CQ 592
            Q
Sbjct: 424 AQ 425



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 6/212 (2%)

Query: 82  FCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-ENSNIRYP 140
           F C  VK L  G+Q H   I  G   N  +   L+  Y+  +     C  V E       
Sbjct: 253 FTC--VKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDL 310

Query: 141 LPWNLLISLY-VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           + WN +IS + + +    + L  +++MQ    R D+ ++  V  AC  +     G+ VH+
Sbjct: 311 VLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHA 370

Query: 200 -CIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
             I +   ++ + V+NALV+MY K G V  ARR+FD M E + VS N+MI+ YA  G+  
Sbjct: 371 LAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEV 430

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           E+ +LF  M E+ +  N IT+  +   C+ TG
Sbjct: 431 ESLRLFELMLEKDIAPNSITFIAVLSACVHTG 462



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 4/183 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVEN 134
           SF  +   C  + + + GKQ+HA AI   +  N V V   LV  Y+     ++A  + + 
Sbjct: 348 SFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDT 407

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
                 +  N +I+ Y + G   E+L +++ M  + I  ++ T+ +VL AC     V+ G
Sbjct: 408 MPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEG 467

Query: 195 RVVHSCIDA--CHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYA 251
           +   + +    C E     ++ ++ + G+ G++  A R+ + M     ++ W T++ A  
Sbjct: 468 QKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACR 527

Query: 252 SKG 254
             G
Sbjct: 528 KHG 530


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 208/659 (31%), Positives = 334/659 (50%), Gaps = 42/659 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   GN   A E    ++    + D    SF  I+     V  +  G+Q+H+  + +G E
Sbjct: 75  FVNLGNFETALEFLKSMKRYGFAVDGY--SFGSILKGVACVGYVEVGQQVHSMMVKMGYE 132

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N      L+  YA      +A  + ++ NIR  + WN LIS Y + G    A  +   M
Sbjct: 133 GNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCM 192

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQV 225
           +   +  D+ T+  +L    +         VH+ I      S   V NA+++ Y + G +
Sbjct: 193 ELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSI 252

Query: 226 DVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           + A R+FD  +E RD V+WN+M++AY      +EAFQLF+EMQ  G E ++ T+ ++   
Sbjct: 253 EDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVI-- 310

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
              +  F+G                           SH G    GK +HG  ++      
Sbjct: 311 ---SAAFEG---------------------------SHQGQ---GKSLHGLVIKRGLEFL 337

Query: 345 ENVRNALITMY--SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
             + N+LI MY  S  K +  A  +F+    K  ++WNS+L+G++    +E++   F  M
Sbjct: 338 VPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENM 397

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
               V  ++   +++L  C+ +A LQ G++ H  +L+   F  +  + +SL+ MY++ G 
Sbjct: 398 RSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSG-FEPNGFVASSLIFMYSKCGV 456

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + +A+  FD   +   + + SLI GY   G G++AL LF  M   ++K DH+T VAVL+A
Sbjct: 457 IEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTA 516

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSH GLV EG    + M S YGI P++EH+ACM+DL GRAG L++AK +I  MP+ P + 
Sbjct: 517 CSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAM 576

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W TLLGAC+   +  +    A  LLE  PE    YVL+++M+     W++ A ++  M+
Sbjct: 577 VWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMK 636

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCS 701
           + GV+K+PG +W++  N    F  +D S+   +EIY  LG L E ++   YV   E  S
Sbjct: 637 ERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGELMEEIRRLDYVANSEIMS 695



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 230/512 (44%), Gaps = 43/512 (8%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           AL +    H  AI  G   +      +++ YA       A  +   ++ R  + WN +I+
Sbjct: 14  ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIA 73

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
            +V  G +  AL   K M+      D +++ S+LK    +  V+ G+ VHS  +   +E 
Sbjct: 74  GFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEG 133

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           ++F  +AL+ MY K  +V+ A  +F  +  R++V+WN +IS YA  G    AF L   M+
Sbjct: 134 NVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCME 193

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
            EGVE++              G F  +L LL                            K
Sbjct: 194 LEGVEID-------------DGTFAPLLTLLDDPDLH----------------------K 218

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE-KSIITWNSMLSGY 386
           L  ++H   V+        V NA+IT YS C  +  A  +F    E + ++TWNSML+ Y
Sbjct: 219 LTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAY 278

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
              +  EE+  LF EM   G EP+  T  S++      ++   GK  H  +++R +  E 
Sbjct: 279 LVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGL--EF 336

Query: 447 LL-LWNSLVEMY--ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           L+ + NSL+ MY  + S  + EA ++F+ +  +D V++ S++ G+   G    ALK FE 
Sbjct: 337 LVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFEN 396

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M    +  DH    AVL +CS    +  GQ Q   +    G  P     + ++ +Y + G
Sbjct: 397 MRSQYVVIDHYAFSAVLRSCSDLATLQLGQ-QVHVLVLKSGFEPNGFVASSLIFMYSKCG 455

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           ++  A++     P   + A  + + G  Q  R
Sbjct: 456 VIEDARKSFDATPKDSSIAWNSLIFGYAQHGR 487



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 2/152 (1%)

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+++  YA+ G++  A  +F   S+RD V++ ++IAG+   G    AL+  + M +    
Sbjct: 38  NNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFA 97

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
            D  +  ++L   +  G V  GQ Q   M    G    +   + ++D+Y +   +  A E
Sbjct: 98  VDGYSFGSILKGVACVGYVEVGQ-QVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFE 156

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602
           +   +     S  W  L+       + G   W
Sbjct: 157 VFKSIN-IRNSVTWNALISGYAQVGDRGTAFW 187


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 184/554 (33%), Positives = 310/554 (55%), Gaps = 27/554 (4%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN +I+ + R G   +AL  +  M+   +  +  T+P  +K+C  + D+  G+ +H    
Sbjct: 54  WNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAF 113

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
              +   +FV +AL+ MY K G ++ AR+LFD++ ER+ VSW +MIS Y      +EA  
Sbjct: 114 VFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVF 173

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF    +E + V+   ++ I                          +DSV     + AC+
Sbjct: 174 LF----KEFLLVDETDYDEIV--------------------GVGVGVDSVLLGCVISACA 209

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            V    + + +HG AV+  +     V N L+  Y++C ++  +  +F    E  + +WNS
Sbjct: 210 RVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNS 269

Query: 382 MLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           +++ Y     + E+  LF +M + G V  N VT++++L  CA    LQ GK  H  +++ 
Sbjct: 270 LIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKM 329

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            +  ++L++  S+V+MY + G+V  A+  FD + R++  ++T ++AGYG+ G G+ A+K+
Sbjct: 330 EL-EDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKV 388

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F EM +  IKP+++T V+VL+ACSH+GL+ EG   F +M   + + P +EH++CMVDL G
Sbjct: 389 FYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLG 448

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           RAG L +A  +I +M   P   +W +LLGAC+IH+N  +GE +A KL +  P N GYYVL
Sbjct: 449 RAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVL 508

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           ++N+YA  G WD + ++R  M++ G+ K PG + V+       FLV D  + Q ++IY  
Sbjct: 509 LSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEY 568

Query: 681 LGGLTELMKDAGYV 694
           L  L   +++ GY+
Sbjct: 569 LDELNVKLQEVGYM 582



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 208/471 (44%), Gaps = 69/471 (14%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           + DFA  G+  +A  AF+ +R  +   +    +F   I  C  +  L  GKQ+H  A   
Sbjct: 58  IADFARSGDSLQALYAFSSMRKLSLHPN--RSTFPCTIKSCSSLYDLCAGKQIHQQAFVF 115

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   +  +   L+  Y+     N+A  L +    R  + W  +IS YV++    EA+ ++
Sbjct: 116 GYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLF 175

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC----------------HEW 207
           K+     +  D   Y  ++     +  V  G V+ +C   C                 E 
Sbjct: 176 KEF----LLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEG 231

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            L V N L+  Y K G++ V+R++FD M E D  SWN++I+ YA  GL  EAF LF +M 
Sbjct: 232 CLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMV 291

Query: 268 EEG-VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
           + G V  N +T + +                                   L AC+H GAL
Sbjct: 292 KRGEVRYNAVTLSAV-----------------------------------LLACAHSGAL 316

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           ++GK IH   V+    +   V  +++ MY +C  +  A   F     K++ +W  M++GY
Sbjct: 317 QIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGY 376

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN-- 444
                 +E+  +F EM R G++PNY+T  S+L  C+    L+ G  +H +   +  F+  
Sbjct: 377 GMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEG--WHWFNKMKCEFDVE 434

Query: 445 ---EHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQ 491
              EH   ++ +V++  R+G + EA  +   M  + D + + SL+    I 
Sbjct: 435 PGIEH---YSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIH 482



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 163/336 (48%), Gaps = 17/336 (5%)

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
           + +V +WN+I     R+G+    L   S MR    + +       + +CS +  L  GK+
Sbjct: 48  KTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQ 107

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IH  A    YG    V +ALI MYS+C  L  A  LF    E+++++W SM+SGY   + 
Sbjct: 108 IHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNER 167

Query: 392 AEESAFLFREMFRSGVEPNY------------VTIASILPLCARVANLQHGKEFHCYILR 439
           A E+ FLF+E      E +Y            V +  ++  CARV      +  H   ++
Sbjct: 168 AREAVFLFKEFLLVD-ETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVK 226

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
           +  F   L + N+L++ YA+ G++  ++ VFD M   D  ++ SLIA Y   G    A  
Sbjct: 227 KG-FEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFS 285

Query: 500 LFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           LF +M  + +++ + VT+ AVL AC+HSG +  G+   +++  +  +   L     +VD+
Sbjct: 286 LFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKM-ELEDNLVVGTSIVDM 344

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           Y + G +  A++   ++      + W  ++    +H
Sbjct: 345 YCKCGRVEMARKAFDRLKRKNVKS-WTVMVAGYGMH 379



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 115/245 (46%), Gaps = 40/245 (16%)

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
           K   + S+ +WNS+++ +     + ++ + F  M +  + PN  T    +  C+ + +L 
Sbjct: 44  KYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLC 103

Query: 429 HGKEFHCYILRRAM---FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            GK+ H    ++A    +   + + ++L++MY++ G + +A+ +FD +  R+ V++TS+I
Sbjct: 104 AGKQIH----QQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMI 159

Query: 486 AGYGIQGEGRVALKLF-----------EEMNKNQIKPDHVTMVAVLSACSH--------- 525
           +GY      R A+ LF           +E+    +  D V +  V+SAC+          
Sbjct: 160 SGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTEC 219

Query: 526 -SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
             GL V  +K FE   ++            ++D Y + G ++ ++++   M  T   + W
Sbjct: 220 VHGLAV--KKGFEGCLAVGNT---------LMDAYAKCGEISVSRKVFDGMEETDVCS-W 267

Query: 585 ATLLG 589
            +L+ 
Sbjct: 268 NSLIA 272


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 328/610 (53%), Gaps = 44/610 (7%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E N      L+  YA  SL + A  L +       + +N LI+ Y   G    AL ++ +
Sbjct: 71  EPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGE 130

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           M+   +  D FT+  V+ AC     V   R +HS    +  +  + V N+L++ Y K G 
Sbjct: 131 MREMGLVMDGFTFSGVITACCN--HVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGI 188

Query: 225 VDVARRLFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           ++ A  +F+ M E  RD VSWN+MI AY       +A  L+ +M   G E+++ T     
Sbjct: 189 LEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFT----- 243

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                       +A+V+   +C  V  L  G + H  A++  + 
Sbjct: 244 ----------------------------LASVLTTFSC--VEDLSGGLQFHAKAIKTGFN 273

Query: 343 EYENVRNALITMYSRC-KDLRHAYILFKMTAEKSIITWNSMLSGYT-HLDCAEESAFLFR 400
           +  +V + LI MY++C   +  +  +F+      ++ WN+M+SGY+ + + + E+   FR
Sbjct: 274 KNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFR 333

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M R+G  P+  +    +  C+ +++   GK+FH   ++  + +  + + N+LV MY++ 
Sbjct: 334 QMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKC 393

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G + +A+ +F  M + + VT  S+IAGY   G G  +L LFE+M    I P  +T+V++L
Sbjct: 394 GNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSIL 453

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           SAC+H+G V EG+K F  M  I+GI P+ EH++CM+DL GRAG L++A+ +I  MP++P 
Sbjct: 454 SACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPG 513

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
           SA WA LLGAC+ + N  + E AA + L+  P N+  Y+++A+MY+A   W++ A++R  
Sbjct: 514 SAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKL 573

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV--VKEE 698
           MRD G+RK PGC+W++       F+ +D S+ + +EI+  L  +   MK AGYV  V+  
Sbjct: 574 MRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWA 633

Query: 699 FCSEEEIVEE 708
           F  ++E  E+
Sbjct: 634 FVKDDETGEQ 643



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 20/219 (9%)

Query: 82  FCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA--------SFSLYNNACFLVE 133
           F C  V+ L+ G Q HA AI  G  KN  +   L+  YA        S  ++   C    
Sbjct: 251 FSC--VEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEIC---- 304

Query: 134 NSNIRYPLPWNLLISLYVRDG-FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
            S++   + WN +IS Y ++     EAL  ++QMQ      D+ ++   + AC  +    
Sbjct: 305 GSDL---VVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPS 361

Query: 193 FGRVVHSCIDACHEWS--LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
            G+  H+        S  + V+NALV+MY K G +  AR+LF +M + + V+ N++I+ Y
Sbjct: 362 QGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGY 421

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           A  G+  E+  LF +M    +    IT  +I   C  TG
Sbjct: 422 AQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTG 460


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 202/647 (31%), Positives = 333/647 (51%), Gaps = 68/647 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNP--VLVPKLVTFYASFSLYNNACFLVENSNI 137
           ++ C    + L  G++ HA A+  G            L++ YA   L ++A  L  + + 
Sbjct: 169 LLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDT 228

Query: 138 RYP-----LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
                   + WN ++SL V+ G   EA+ V   M +R +R D  T+ S L AC ++  + 
Sbjct: 229 TDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLS 288

Query: 193 FGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML--ERDAVSWNTMIS 248
            GR +H+ +  D+    + FV +ALV MY    +V VARR+FD +    R    WN M+ 
Sbjct: 289 LGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVC 348

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            YA  G+ +EA                                   LEL +RM  +   +
Sbjct: 349 GYAQAGMDEEA-----------------------------------LELFARMEAEAGVV 373

Query: 309 DSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
            S  T+ G L AC+        + +HG  ++    +   V+NAL+ +Y+R  D+  A  +
Sbjct: 374 PSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWI 433

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG------------------VEP 409
           F     + +++WN++++G        ++  L REM + G                  V P
Sbjct: 434 FAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVP 493

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N VT+ ++LP CA +A    GKE H Y +R A+ +  + + ++LV+MYA+ G +  +++V
Sbjct: 494 NNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHAL-DSDIAVGSALVDMYAKCGCLALSRAV 552

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGL 528
           FD + +R+ +T+  LI  YG+ G G  A+ LF+ M   N+ KP+ VT +A L+ACSHSG+
Sbjct: 553 FDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGM 612

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATL 587
           V  G + F  M   +G+ P  +  AC VD+ GRAG L++A  IIT M P     + W++ 
Sbjct: 613 VDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSF 672

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC++HRN  +GE AAE+L +  P+ + +YVL+ N+Y+A G W+K ++VR  MR  GV 
Sbjct: 673 LGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVS 732

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           K PGC+W++   V   F+  ++++ ++  ++  +  L E M++ GY 
Sbjct: 733 KEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYT 779



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 129/507 (25%), Positives = 214/507 (42%), Gaps = 60/507 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIA-LGLEKNPVLVPKLVTFYASFSLYNNA--CFLV 132
           +FA  +  C +++ L+ G+++HA  +    L  N  +   LV  YAS      A   F +
Sbjct: 273 TFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDM 332

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDV 191
                R    WN ++  Y + G   EAL ++ +M++   +     T   VL AC      
Sbjct: 333 VPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETF 392

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
                VH   +      + FV NAL+ +Y + G ++ AR +F  +  RD VSWNT+I+  
Sbjct: 393 AGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGC 452

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
             +G   +AFQL  EMQ++G   +  T + IAG                    +    ++
Sbjct: 453 VVQGHIHDAFQLVREMQQQGRFTDATTEDGIAG-----------------TDEEPVVPNN 495

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           V  +  L  C+ + A   GKEIHG A+R        V +AL+ MY++C  L  +  +F  
Sbjct: 496 VTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDR 555

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQH 429
             ++++ITWN ++  Y      +E+  LF  M  S   +PN VT  + L  C+    +  
Sbjct: 556 LPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDR 615

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G E    + R         L    V++  R+G++ EA S+   M                
Sbjct: 616 GMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSME--------------- 660

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-Q 548
             GE +V+                    + L AC     V  G+   ER+   + + P +
Sbjct: 661 -PGEQQVS-----------------AWSSFLGACRLHRNVPLGEIAAERL---FQLEPDE 699

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKM 575
             H+  + ++Y  AGL  K+ E+  +M
Sbjct: 700 ASHYVLLCNIYSAAGLWEKSSEVRNRM 726



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 198/444 (44%), Gaps = 69/444 (15%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           D+F  P   K+   +  +   R +H      D  H ++  V NAL++ Y + G +  A  
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LF+ M  RDAV++N++I+A      W  A     +M  EG  ++  T  ++         
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSV--------- 168

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA-LKLGKEIHGSAVRGCY--GEYENV 347
                                     L ACSH+   L+LG+E H  A++  +  G+    
Sbjct: 169 --------------------------LLACSHLAEDLRLGREAHAFALKNGFLDGDERFA 202

Query: 348 RNALITMYSRCKDLRHAYILFKM-----TAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
            NAL++MY+R   +  A +LF       +    ++TWN+M+S         E+  +  +M
Sbjct: 203 FNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDM 262

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              GV P+ +T AS LP C+++  L  G+E H Y+L+ +    +  + ++LV+MYA   +
Sbjct: 263 VARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHER 322

Query: 463 VPEAKSVFDLM--SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAV 519
           V  A+ VFD++    R    + +++ GY   G    AL+LF  M     + P   T+  V
Sbjct: 323 VGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGV 382

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIF--------PQLEHFACMVDLYGRAGLLNKAKEI 571
           L AC+ S       + F    +++G          P +++   ++DLY R G +  A+ I
Sbjct: 383 LPACARS-------ETFAGKEAVHGYVLKRGMADNPFVQN--ALMDLYARLGDMEAARWI 433

Query: 572 ITKM-PYTPTSAMWATLLGACQIH 594
              + P    S  W TL+  C + 
Sbjct: 434 FAAIEPRDVVS--WNTLITGCVVQ 455



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 143/362 (39%), Gaps = 63/362 (17%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
           +A  G   +A E F R+   A    VV    + A ++  C + +  A  + +H   +  G
Sbjct: 350 YAQAGMDEEALELFARMEAEAG---VVPSETTIAGVLPACARSETFAGKEAVHGYVLKRG 406

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           +  NP +   L+  YA       A ++      R  + WN LI+  V  G   +A  + +
Sbjct: 407 MADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVR 466

Query: 165 QMQSR------------------RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACH 205
           +MQ +                   +  +N T  ++L  C  +     G+ +H   +    
Sbjct: 467 EMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHAL 526

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           +  + V +ALV MY K G + ++R +FD++ +R+ ++WN +I AY   GL  EA  LF  
Sbjct: 527 DSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDR 586

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           M                                  + + E   + V  +  L ACSH G 
Sbjct: 587 M----------------------------------VMSNEAKPNEVTFIAALAACSHSGM 612

Query: 326 LKLGKEIHGSAVRGCYG--EYENVRNALITMYSRCKDLRHAY-ILFKM-TAEKSIITWNS 381
           +  G E+  S  R  +G     ++    + +  R   L  AY I+  M   E+ +  W+S
Sbjct: 613 VDRGMELFHSMKRN-HGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSS 671

Query: 382 ML 383
            L
Sbjct: 672 FL 673


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 196/641 (30%), Positives = 317/641 (49%), Gaps = 41/641 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  CG V AL  G++ H  A+ +GL++N  +   L+  Y       +A  L +  
Sbjct: 142 TLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGM 201

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + +  ++   V+ G   +AL ++ +M    +R D     SVL +C +    +F  
Sbjct: 202 ASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDV 261

Query: 196 V----VHSCIDACHEWSLF-----VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
           V    +  CI A      F     V N+L+ MY K  Q+D A ++FD +     VSWN +
Sbjct: 262 VRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNIL 321

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVN-------------------------------V 275
           I+ +   G + +A ++   M+E G E N                               V
Sbjct: 322 ITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSV 381

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            TWNT+  G  +    +  +EL  RM+ Q    D     + L +CS +G L LG ++H +
Sbjct: 382 TTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSA 441

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           +VR        V + L+ MYS+C  +  A I+F    E+ ++ WNSM+SG       EE+
Sbjct: 442 SVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEA 501

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
              F++M  +G+ P   + AS++  CAR++++  G++ H  I++   +++++ + ++L++
Sbjct: 502 FDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDG-YDQNVYVGSALID 560

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+ G + +A+  FD M  ++ V +  +I GY   G G  A+ LFE M   + +PD VT
Sbjct: 561 MYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVT 620

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            +AVL+ CSHSGLV E    F  M S YGI P  EH+ C++D  GRAG L + + +I  M
Sbjct: 621 FIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNM 680

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P      +W  LL AC +H N  +GE AA+ L    P+N   YVL++N+YA+ G     +
Sbjct: 681 PCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDAS 740

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            VR  M   GV K  G +W+D  +    F+V D       E
Sbjct: 741 GVRALMSSRGVVKGRGYSWIDHKDGVHAFMVADDLQTDGGE 781



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 205/469 (43%), Gaps = 74/469 (15%)

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           L++    R  + WN +I+   R     EAL +Y+ M    +   +FT  SVL ACG +  
Sbjct: 96  LLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAA 155

Query: 191 VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +D GR  H   +    + +LFV NAL+ MY K G V+ A RLFD M   + VS+  M+  
Sbjct: 156 LDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGG 215

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
               G   +A +LF  M   GV V+ +  +++ G C +                      
Sbjct: 216 LVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQ---------------------- 253

Query: 310 SVATVIGLGACSH----VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
                    AC+     V A +LG+ IH   VR  +G  ++V N+LI MY++C  +  A 
Sbjct: 254 ---------ACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAV 304

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F      S ++WN +++G+       ++  +   M  SG EPN VT +++L  C +  
Sbjct: 305 KVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKAR 364

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
           +                                    V  A+++FD +SR    T+ +L+
Sbjct: 365 D------------------------------------VLSARAMFDKISRPSVTTWNTLL 388

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
           +GY  +   +  ++LF  M    ++PD  T+  +LS+CS  G++  G  Q    +  + +
Sbjct: 389 SGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLG-TQVHSASVRFLL 447

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
              +   + +VD+Y + G +  A+ I  +M        W +++    IH
Sbjct: 448 HNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDV-VCWNSMISGLAIH 495



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 198/439 (45%), Gaps = 31/439 (7%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+ N LV +Y   G    A R F  +   +A S+N  +SA    G    A  L  EM + 
Sbjct: 44  FLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDR 103

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
               NV++WNT+     R+      LEL   M  +            L AC  V AL  G
Sbjct: 104 ----NVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDG 159

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +  HG AV+    E   V NAL+ MY++C  +  A  LF   A  + +++ +M+ G    
Sbjct: 160 RRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQA 219

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCAR--------VANLQHGKEFHCYILRRA 441
              +++  LF  M RSGV  + V ++S+L  CA+        V   + G+  H  I+R+ 
Sbjct: 220 GSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKG 279

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            F     + NSL++MY +  ++ EA  VFD +     V++  LI G+G  G    AL++ 
Sbjct: 280 -FGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVL 338

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M ++  +P+ VT   +L++C  +  V+  +  F++++      P +  +  ++  Y +
Sbjct: 339 NLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISR-----PSVTTWNTLLSGYCQ 393

Query: 562 AGLLNKAKEIITKMPY---TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
             L     E+  +M +    P     A +L +C      GI +      L T+  ++   
Sbjct: 394 EELHQDTVELFRRMQHQNVQPDRTTLAVILSSCS---RLGILD------LGTQVHSASVR 444

Query: 619 VLIAN-MYAATGCWDKLAK 636
            L+ N M+ A+G  D  +K
Sbjct: 445 FLLHNDMFVASGLVDMYSK 463


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 198/658 (30%), Positives = 335/658 (50%), Gaps = 39/658 (5%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
           ++ +  ++  A RG+   A   F R+R     H+V       ++     + A      +H
Sbjct: 128 VSFVTLVQAHAQRGDFEAAAALFRRLRWEG--HEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
           +CA  LG + N  +   L+  Y+  SL ++A  +      +  + W  ++S Y  +    
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALV 216
            A  V+ +M+    + + F   SVLKA   +  V  G+ +H C I   ++    V  AL+
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALL 305

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K G +  AR  F+ +   D +  + MIS YA     ++AF+LF+ +    V  N  
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN-- 363

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
                                       E  L SV     L AC+++  L  GK+IH  A
Sbjct: 364 ----------------------------EYSLSSV-----LQACTNMVQLDFGKQIHNHA 390

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  +     V NAL+  Y++C D+  +  +F    + + ++WN+++ G++     EE+ 
Sbjct: 391 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEAL 450

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            +F EM  + +    VT +S+L  CA  A+++H  + HC I  ++ FN   ++ NSL++ 
Sbjct: 451 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSI-EKSTFNNDTVIGNSLIDT 509

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G + +A  VF  +  RD +++ ++I+GY + G+   AL+LF+ MNK+ ++ + +T 
Sbjct: 510 YAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITF 569

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           VA+LS CS +GLV  G   F+ M   +GI P +EH+ C+V L GRAG LN A + I  +P
Sbjct: 570 VALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIP 629

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             P++ +W  LL +C IH+N  +G ++AEK+LE  P++   YVL++NMYAA G  D++A 
Sbjct: 630 SAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVAL 689

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +R  MR++GVRK+PG +WV+       F V    +   + I  +L  L       GY+
Sbjct: 690 LRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYI 747



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 202/443 (45%), Gaps = 48/443 (10%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           D+F     L+ C    D   GR VH  +          LF  N L++MYGK G +  ARR
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LFD+M ER+ VS+ T++ A+A +G ++ A  LF  ++ EG EVN                
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQF-------------- 163

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                 +L+ M      +D+     G+ +C    A KLG + H +           V + 
Sbjct: 164 ------VLTTMLKLAIAMDAAGLAGGVHSC----AWKLGHD-HNAF----------VGSG 202

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI  YS C  +  A  +F     K  + W +M+S Y+  DC E +  +F +M  SG +PN
Sbjct: 203 LIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPN 262

Query: 411 YVTIASILPLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
              + S+L     + ++  GK  H C I  + + +    +  +L++MYA+ G + +A+  
Sbjct: 263 PFALTSVLKAAVCLPSVVLGKGIHGCAI--KTLNDTEPHVGGALLDMYAKCGDIKDARLA 320

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+++   D +  + +I+ Y    +   A +LF  + ++ + P+  ++ +VL AC++  + 
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM-VQ 379

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL-L 588
           ++  KQ        G    L     ++D Y +   ++ + +I + +        W T+ +
Sbjct: 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL-RDANEVSWNTIVV 438

Query: 589 GACQIHRNTGIGEWAAEKLLETR 611
           G  Q    +G+GE A     E +
Sbjct: 439 GFSQ----SGLGEEALSVFCEMQ 457



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 125/275 (45%), Gaps = 10/275 (3%)

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAV-RGCYGEYE-NVRNALITMYSRCKDLRHAY 365
           +DS A    L  C   G  + G+ +HG  V RG  G  +    N L+ MY +   L  A 
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV- 424
            LF    E++++++ +++  +      E +A LFR +   G E N   + ++L L   + 
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 425 -ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
            A L  G     + L     + +  + + L++ Y+    V +A+ VF+ + R+D V +T+
Sbjct: 177 AAGLAGGVHSCAWKLGH---DHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTA 233

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE-RMTSI 542
           +++ Y        A ++F +M  +  KP+   + +VL A      VV G+      + ++
Sbjct: 234 MVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTL 293

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
               P +     ++D+Y + G +  A+     +PY
Sbjct: 294 NDTEPHVG--GALLDMYAKCGDIKDARLAFEMIPY 326


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 193/621 (31%), Positives = 320/621 (51%), Gaps = 43/621 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAI 101
           +K +  +G+  +A + F  +     S D   D++ +  +I  C ++  +  G+ LH   +
Sbjct: 93  IKMYIAKGDYFEAMKVFLEM---LGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTL 149

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
                 +  ++  L+  Y +      A  + +    +  + WN +I+ Y ++GF   AL 
Sbjct: 150 VSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALV 209

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGK 221
           V+ QM    +  D  +  SVL ACG + +++ GR VH  ++        V NALV MY K
Sbjct: 210 VFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAK 269

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +D AR +FD M                                   VE +V++W ++
Sbjct: 270 CGSMDEARLVFDNM-----------------------------------VERDVVSWTSM 294

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
             G +  G+ K  L L   M+ +    +SV   + L AC+ +  LK G+ +HG  ++   
Sbjct: 295 INGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRL 354

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V  +LI MY++C  L  ++ +F  T+ K  + WN++LSG  H   A E+  LF++
Sbjct: 355 YSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKK 414

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   GVE N  T  S+LP    +A+LQ     + Y++R   F  ++ +  SL+++Y++ G
Sbjct: 415 MLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMRSG-FVSNIQVATSLIDIYSKCG 473

Query: 462 KVPEAKSVFDLM--SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            +  A  +F+ +    +D   ++ +IAGYG+ G G  A+ LF++M ++ +KP+ VT  +V
Sbjct: 474 SLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSV 533

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           L +CSH+G+V +G   F+ M   +   P  +H+ CMVDL GRAG +++A ++I  MP+ P
Sbjct: 534 LQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMP 593

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
             A+W  LLGAC +H N  +GE AA  L E  P N+G YVL+A +YAA G W+    VR 
Sbjct: 594 GHAVWGALLGACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQ 653

Query: 640 CMRDLGVRKIPGCAWVDAGNV 660
            M D+G+RK P  + ++AG V
Sbjct: 654 RMDDIGLRKAPAHSLIEAGTV 674



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 156/524 (29%), Positives = 261/524 (49%), Gaps = 49/524 (9%)

Query: 85  GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWN 144
           G  ++L   KQLHA  I  GL    +    LV  YA     +NA  L +    R  L +N
Sbjct: 32  GAAQSLTSTKQLHAHLITSGLLSIDIR-SVLVATYAHCGYVHNARKLFDELRQRGTLLYN 90

Query: 145 LLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
            +I +Y+  G Y EA+ V+ +M  S+    DN+TYP V+KAC E++ V++GRV+H     
Sbjct: 91  FMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLV 150

Query: 204 CHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
               S LFV N+L++MY   G+V+ AR++FD M E+  VSWNTMI+ Y   G    A  +
Sbjct: 151 SKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVV 210

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F +M + GVE+                                   D  + V  L AC +
Sbjct: 211 FNQMVDSGVEI-----------------------------------DGASVVSVLPACGY 235

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +  L++G+ +HG       G+ + V NAL+ MY++C  +  A ++F    E+ +++W SM
Sbjct: 236 LKELEVGRRVHGLVEEKVLGK-KIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSM 294

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++GY     A+ +  LF+ M   G+ PN VTIA IL  CA + NL+ G+  H +++++ +
Sbjct: 295 INGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRL 354

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           ++E + +  SL++MYA+   +  + SVF   SR+  V + +L++G         A+ LF+
Sbjct: 355 YSE-VAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFK 413

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ--KQFERMTSIYGIFPQLEHFACMVDLYG 560
           +M    ++ +  T  ++L A    G++ + Q            G    ++    ++D+Y 
Sbjct: 414 KMLMEGVEINAATCNSLLPA---YGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYS 470

Query: 561 RAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWA 603
           + G L  A +I   +P       +W+ ++    +H   G GE A
Sbjct: 471 KCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMH---GHGETA 511



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 204/419 (48%), Gaps = 48/419 (11%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           Y S+LK  G    +   + +H+ +      S+ + + LV+ Y   G V  AR+LFD++ +
Sbjct: 24  YQSLLKHYGAAQSLTSTKQLHAHLITSGLLSIDIRSVLVATYAHCGYVHNARKLFDELRQ 83

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           R  + +N MI  Y +KG + EA ++F+EM                               
Sbjct: 84  RGTLLYNFMIKMYIAKGDYFEAMKVFLEM------------------------------- 112

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
              + +++   D+      + ACS +  ++ G+ +HG  +   +G +  V N+L+ MY  
Sbjct: 113 ---LGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMN 169

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           C ++  A  +F    EKS+++WN+M++GY     A  +  +F +M  SGVE +  ++ S+
Sbjct: 170 CGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSV 229

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP C  +  L+ G+  H  +  + +  +  ++ N+LV+MYA+ G + EA+ VFD M  RD
Sbjct: 230 LPACGYLKELEVGRRVHGLVEEKVLGKK--IVSNALVDMYAKCGSMDEARLVFDNMVERD 287

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS-----HSGLVVEG 532
            V++TS+I GY + G+ + AL LF+ M    ++P+ VT+  +L AC+       G  + G
Sbjct: 288 VVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHG 347

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
               +R+ S   +   L      +D+Y +   L  +  + T+     T   W  LL  C
Sbjct: 348 WVMKQRLYSEVAVETSL------IDMYAKCNCLGLSFSVFTRTSRKKTVP-WNALLSGC 399



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 5/181 (2%)

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P      S+L       +L   K+ H +++   + +  + + + LV  YA  G V  A+ 
Sbjct: 19  PKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLS--IDIRSVLVATYAHCGYVHNARK 76

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSG 527
           +FD + +R  + Y  +I  Y  +G+   A+K+F EM       PD+ T   V+ ACS   
Sbjct: 77  LFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSEL- 135

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           L+VE  +    +T +      L     ++ +Y   G + +A+++   M      + W T+
Sbjct: 136 LLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVS-WNTM 194

Query: 588 L 588
           +
Sbjct: 195 I 195


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 213/648 (32%), Positives = 344/648 (53%), Gaps = 47/648 (7%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKN 108
           G  + + E F ++R T    +VV D +  + ++  C  ++ L  GKQ+HA  +  G E +
Sbjct: 209 GRSAVSLELFAQMRET----NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 264

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             +V  L+ FY   +       L +   ++  + W  +IS Y+++ F  EA+ ++ +M  
Sbjct: 265 VSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR 324

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
              + D F   SVL +CG    ++ GR VH+  I A  E   FV N L+ M         
Sbjct: 325 LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDM--------- 375

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
                                 YA   L  +A ++F  M E+    NVI++N +  G   
Sbjct: 376 ----------------------YAKSNLLIDAKKVFDVMAEQ----NVISYNAMIEGYSS 409

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                  LEL   MR +  +  S+ T + L G  + + AL+L K+IHG  ++        
Sbjct: 410 QEKLSEALELFHEMRVR-LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLF 468

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
             +ALI +YS+C  ++ A  +F+   EK I+ WN+M  GYT     EE+  L+  +  S 
Sbjct: 469 AGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSR 528

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
            +PN  T A+++   + +A+L+HG++FH  +++  + +    + N+LV+MYA+ G + EA
Sbjct: 529 QKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGL-DFCPFVTNALVDMYAKCGSIEEA 587

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + +F+    RD V + S+I+ +   GE   AL +F EM K  I+P++VT VAVLSACSH+
Sbjct: 588 RKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHA 647

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G V +G   F  M   +GI P  EH+AC+V L GR+G L +AKE I KMP  P + +W +
Sbjct: 648 GRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRS 706

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           LL AC+I  N  +G++AAE  + T P++SG Y+L++N++A+ G W  + KVR  M    V
Sbjct: 707 LLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEV 766

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            K PG +W++  N  + F+  DT++ +A +I  +L  L + +K AGYV
Sbjct: 767 VKEPGRSWIEVNNKVNVFIARDTTHREA-DIGSVLDILIQHIKGAGYV 813



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 246/518 (47%), Gaps = 39/518 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           FA+++        +   K +H   I  GL+ +  L   L+   +     +NA  + +   
Sbjct: 30  FANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMP 89

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGR 195
            +  + W+ ++S+Y + G+  EAL V+  +Q +     N F   SV++AC ++  V+ G 
Sbjct: 90  HKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGA 149

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   + +  +  ++V  +L+  Y K G ++ AR +FD++ E+ AV+W T+I+ Y   G
Sbjct: 150 QLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCG 209

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               + +LF +M+E  V                                 + Y+  V++V
Sbjct: 210 RSAVSLELFAQMRETNV-------------------------------VPDRYV--VSSV 236

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L ACS +  L+ GK+IH   +R       +V N LI  Y++C  ++    LF     K
Sbjct: 237 --LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVK 294

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           +II+W +M+SGY       E+  LF EM R G +P+     S+L  C     L+ G++ H
Sbjct: 295 NIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVH 354

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            Y ++  + ++  +  N L++MYA+S  + +AK VFD+M+ ++ ++Y ++I GY  Q + 
Sbjct: 355 AYTIKANLESDEFVK-NGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKL 413

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL+LF EM      P  +T V++L   S S   +E  KQ   +   +G+   L   + 
Sbjct: 414 SEALELFHEMRVRLFPPSLLTFVSLL-GVSASLFALELSKQIHGLIIKFGVSLDLFAGSA 472

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           ++D+Y +   +  A+ +  +M         A   G  Q
Sbjct: 473 LIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQ 510



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 131/529 (24%), Positives = 256/529 (48%), Gaps = 45/529 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASH--DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG 104
           ++ +G   +A   F  ++  +  H  + VL   A +I  C ++  + +G QLH   +  G
Sbjct: 103 YSQQGYSEEALMVFVDLQRKSGEHPNEFVL---ASVIRACTQLGVVEKGAQLHGFVVRSG 159

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
            +++  +   L+ FY+       A  + +  + +  + W  +I+ Y + G  A +L ++ 
Sbjct: 160 FDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFA 219

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           QM+   +  D +   SVL AC  +  ++ G+ +H+  +    E  + V N L+  Y K  
Sbjct: 220 QMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCN 279

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +V   R+LFD+M+ ++ +SW TMIS Y       EA +LF        E+N + W     
Sbjct: 280 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFG-------EMNRLGWKP--- 329

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                    D  A    L +C    AL+ G+++H   ++     
Sbjct: 330 -------------------------DGFACTSVLTSCGSREALEQGRQVHAYTIKANLES 364

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
            E V+N LI MY++   L  A  +F + AE+++I++N+M+ GY+  +   E+  LF EM 
Sbjct: 365 DEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR 424

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
                P+ +T  S+L + A +  L+  K+ H  I++  + +  L   ++L+++Y++   V
Sbjct: 425 VRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGV-SLDLFAGSALIDVYSKCSYV 483

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A+ VF+ M+ +D V + ++  GY    E   ALKL+  +  ++ KP+  T  A+++A 
Sbjct: 484 KDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAA 543

Query: 524 SHSGLVVEGQKQFERMTSIYGIF-PQLEHFACMVDLYGRAGLLNKAKEI 571
           S+   +  GQ+   ++  +   F P + +   +VD+Y + G + +A+++
Sbjct: 544 SNLASLRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKM 590



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 7/261 (2%)

Query: 44  LKDFAGRGNLSKAFEAF--TRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           ++ ++ +  LS+A E F   R+R+   S    L +F  ++     + AL   KQ+H   I
Sbjct: 404 IEGYSSQEKLSEALELFHEMRVRLFPPS----LLTFVSLLGVSASLFALELSKQIHGLII 459

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
             G+  +      L+  Y+  S   +A  + E  N +  + WN +   Y +     EAL 
Sbjct: 460 KFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALK 519

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           +Y  +Q  R + + FT+ +++ A   +  +  G+  H+  +    ++  FV NALV MY 
Sbjct: 520 LYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYA 579

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G ++ AR++F+  + RD V WN+MIS +A  G  +EA  +F EM +EG++ N +T+  
Sbjct: 580 KCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVA 639

Query: 281 IAGGCLRTGNFKGVLELLSRM 301
           +   C   G  +  L   + M
Sbjct: 640 VLSACSHAGRVEDGLNHFNSM 660


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 198/658 (30%), Positives = 335/658 (50%), Gaps = 39/658 (5%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
           ++ +  ++  A RG+   A   F R+R     H+V       ++     + A      +H
Sbjct: 128 VSFVTLVQAHAQRGDFEAAAALFRRLRWEG--HEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
           +CA  LG + N  +   L+  Y+  SL ++A  +      +  + W  ++S Y  +    
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALV 216
            A  V+ +M+    + + F   SVLKA   +  V  G+ +H C I   ++    V  AL+
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALL 305

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K G +  AR  F+ +   D +  + MIS YA     ++AF+LF+ +    V  N  
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN-- 363

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
                                       E  L SV     L AC+++  L  GK+IH  A
Sbjct: 364 ----------------------------EYSLSSV-----LQACTNMVQLDFGKQIHNHA 390

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  +     V NAL+  Y++C D+  +  +F    + + ++WN+++ G++     EE+ 
Sbjct: 391 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEAL 450

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            +F EM  + +    VT +S+L  CA  A+++H  + HC I  ++ FN   ++ NSL++ 
Sbjct: 451 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSI-EKSTFNNDTVIGNSLIDT 509

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G + +A  VF  +  RD +++ ++I+GY + G+   AL+LF+ MNK+ ++ + +T 
Sbjct: 510 YAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITF 569

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           VA+LS CS +GLV  G   F+ M   +GI P +EH+ C+V L GRAG LN A + I  +P
Sbjct: 570 VALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIP 629

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             P++ +W  LL +C IH+N  +G ++AEK+LE  P++   YVL++NMYAA G  D++A 
Sbjct: 630 SAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVAL 689

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +R  MR++GVRK+PG +WV+       F V    +   + I  +L  L       GY+
Sbjct: 690 LRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYI 747



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 200/435 (45%), Gaps = 48/435 (11%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           D+F     L+ C    D   GR VH  +          LF  N L++MYGK G +  ARR
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LFD+M ER+ VS+ T++ A+A +G ++ A  LF  ++ EG EVN                
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQF-------------- 163

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                 +L+ M      +D+     G+ +C    A KLG + H +           V + 
Sbjct: 164 ------VLTTMLKLAIAMDAAGLAGGVHSC----AWKLGHD-HNAF----------VGSG 202

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI  YS C  +  A  +F     K  + W +M+S Y+  DC E +  +F +M  SG +PN
Sbjct: 203 LIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPN 262

Query: 411 YVTIASILPLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
              + S+L     + ++  GK  H C I  + + +    +  +L++MYA+ G + +A+  
Sbjct: 263 PFALTSVLKAAVCLPSVVLGKGIHGCAI--KTLNDTEPHVGGALLDMYAKCGDIKDARLA 320

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+++   D +  + +I+ Y    +   A +LF  + ++ + P+  ++ +VL AC++  + 
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM-VQ 379

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL-L 588
           ++  KQ        G    L     ++D Y +   ++ + +I + +        W T+ +
Sbjct: 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL-RDANEVSWNTIVV 438

Query: 589 GACQIHRNTGIGEWA 603
           G  Q    +G+GE A
Sbjct: 439 GFSQ----SGLGEEA 449



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 125/275 (45%), Gaps = 10/275 (3%)

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAV-RGCYGEYE-NVRNALITMYSRCKDLRHAY 365
           +DS A    L  C   G  + G+ +HG  V RG  G  +    N L+ MY +   L  A 
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV- 424
            LF    E++++++ +++  +      E +A LFR +   G E N   + ++L L   + 
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 425 -ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
            A L  G     + L     + +  + + L++ Y+    V +A+ VF+ + R+D V +T+
Sbjct: 177 AAGLAGGVHSCAWKLGH---DHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTA 233

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE-RMTSI 542
           +++ Y        A ++F +M  +  KP+   + +VL A      VV G+      + ++
Sbjct: 234 MVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTL 293

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
               P +     ++D+Y + G +  A+     +PY
Sbjct: 294 NDTEPHVG--GALLDMYAKCGDIKDARLAFEMIPY 326


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 188/573 (32%), Positives = 311/573 (54%), Gaps = 53/573 (9%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W L+I+ + + G   +A+ ++  M+      D FTY SVL AC E+  +  G+ +
Sbjct: 19  RNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 78

Query: 198 HS-------CIDACHEWSLFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWNTMI 247
           HS        +D C      V  +LV MY K    G VD +R++F++M E + +SW  +I
Sbjct: 79  HSRVIRLGLALDVC------VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAII 132

Query: 248 SAYASKG-LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           +AYA  G   KEA +LF +M    +  N  +++++                         
Sbjct: 133 TAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV------------------------- 167

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                     L AC ++     G++++  AV+        V N+LI+MY+R   +  A  
Sbjct: 168 ----------LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARK 217

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
            F +  EK+++++N+++ GY     +EE+  LF E+  +G+  +  T AS+L   A +  
Sbjct: 218 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 277

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           +  G++ H  +L+   +  +  + N+L+ MY+R G +  A  VF+ M  R+ +++TS+I 
Sbjct: 278 MGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 336

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           G+   G    AL++F +M +   KP+ +T VAVLSACSH G++ EGQK F  M   +GI 
Sbjct: 337 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 396

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606
           P++EH+ACMVDL GR+GLL +A E I  MP    + +W TLLGAC++H NT +G  AAE 
Sbjct: 397 PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEM 456

Query: 607 LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
           +LE  P++   Y+L++N++A+ G W  + K+R  M++  + K  GC+W++  N    F V
Sbjct: 457 ILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHV 516

Query: 667 DDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            +TS+ QA +IY  L  L   +K+ GY+   +F
Sbjct: 517 GETSHPQAWQIYQELDQLASKIKEMGYIPDTDF 549



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 237/489 (48%), Gaps = 61/489 (12%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G    A + F  + ++    D    +++ ++  C ++  LA GKQLH+  I LGL 
Sbjct: 31  FAQLGCARDAIDLFLDMELSGYVPDRF--TYSSVLSACTELGLLALGKQLHSRVIRLGLA 88

Query: 107 KNPVLVPKLVTFYASFSL---YNNACFLVENSNIRYPLPWNLLISLYVRDG-FYAEALCV 162
            +  +   LV  YA  +     +++  + E       + W  +I+ Y + G    EA+ +
Sbjct: 89  LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIEL 148

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-FVHNALVSMYGK 221
           + +M S  IR ++F++ SVLKACG + D   G  V+S        S+  V N+L+SMY +
Sbjct: 149 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR 208

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G+++ AR+ FD + E++ VS+N ++  YA     +EAF LF E+ + G+ ++  T+ ++
Sbjct: 209 SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASL 268

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L   + +GA+  G++IHG  ++G Y
Sbjct: 269 -----------------------------------LSGAASIGAMGKGEQIHGRLLKGGY 293

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
              + + NALI+MYSRC ++  A+ +F    ++++I+W SM++G+     A  +  +F +
Sbjct: 294 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 353

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEM 456
           M  +G +PN +T  ++L  C+ V  +  G++        +M+ EH ++     +  +V++
Sbjct: 354 MLETGTKPNEITYVAVLSACSHVGMISEGQKHF-----NSMYKEHGIVPRMEHYACMVDL 408

Query: 457 YARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE---GRVALKLFEEMNKNQIKPD 512
             RSG + EA    + M    D + + +L+    + G    GR A ++  E      +PD
Sbjct: 409 LGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ-----EPD 463

Query: 513 HVTMVAVLS 521
                 +LS
Sbjct: 464 DPAAYILLS 472



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 194/405 (47%), Gaps = 52/405 (12%)

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A ++FDKM ER+ V+W  MI+ +A  G  ++A  LF++M+  G   +  T++++      
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV------ 62

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        L AC+ +G L LGK++H   +R        V
Sbjct: 63  -----------------------------LSACTELGLLALGKQLHSRVIRLGLALDVCV 93

Query: 348 RNALITMYSRCK---DLRHAYILFKMTAEKSIITWNSMLSGYTHL-DCAEESAFLFREMF 403
             +L+ MY++C     +  +  +F+   E ++++W ++++ Y    +C +E+  LF +M 
Sbjct: 94  GCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI 153

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
              + PN+ + +S+L  C  +++   G++ + Y ++  + + +  + NSL+ MYARSG++
Sbjct: 154 SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN-CVGNSLISMYARSGRM 212

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A+  FD++  ++ V+Y +++ GY    +   A  LF E+    I     T  ++LS  
Sbjct: 213 EDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGA 272

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           +  G + +G++   R+  + G +   +     ++ +Y R G +  A ++  +M      +
Sbjct: 273 ASIGAMGKGEQIHGRL--LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 330

Query: 583 MWATLLGACQIHRNTGIGEWAAE---KLLE--TRPENSGYYVLIA 622
            W +++     H   G    A E   K+LE  T+P    Y  +++
Sbjct: 331 -WTSMITGFAKH---GFATRALEMFHKMLETGTKPNEITYVAVLS 371



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 111/242 (45%), Gaps = 24/242 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY-------ASFSLYNNA 128
           +FA ++     + A+ +G+Q+H   +  G + N  +   L++ Y       A+F ++N  
Sbjct: 264 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE- 322

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
              +E+ N+   + W  +I+ + + GF   AL ++ +M     + +  TY +VL AC  +
Sbjct: 323 ---MEDRNV---ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 376

Query: 189 MDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNT 245
             +  G+   + +   H     +  +  +V + G+ G +  A    + M L  DA+ W T
Sbjct: 377 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 436

Query: 246 MISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           ++ A   + +  L + A ++ +E + +     ++  N  A      G +K V+++   M+
Sbjct: 437 LLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA----GQWKDVVKIRKSMK 492

Query: 303 TQ 304
            +
Sbjct: 493 ER 494


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 186/567 (32%), Positives = 314/567 (55%), Gaps = 41/567 (7%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W L+I+ + + GF  +A+ ++  M       D FT   V+ AC EM  +  GR  
Sbjct: 108 RNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQF 167

Query: 198 HSCI-DACHEWSLFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWNTMISAYA-S 252
           H  +  +  +  + V  +LV MY K    G VD AR++FD+M   + +SW  +I+ Y  S
Sbjct: 168 HCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQS 227

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G  +EA +LF+EM +  V+ N  T++++                               
Sbjct: 228 GGCDREAIELFLEMVQGQVKPNHFTFSSV------------------------------- 256

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               L AC+++  + LG++++   V+        V N+LI+MYSRC ++ +A   F +  
Sbjct: 257 ----LKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLF 312

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           EK+++++N++++ Y     +EE+  LF E+  +G   N  T AS+L   + +  +  G++
Sbjct: 313 EKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQ 372

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  IL+   F  +L + N+L+ MY+R G +  A  VF+ M   + +++TS+I G+   G
Sbjct: 373 IHSRILKSG-FKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHG 431

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               AL+ F +M +  + P+ VT +AVLSACSH GL+ EG K F+ M   +GI P++EH+
Sbjct: 432 FATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHY 491

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           AC+VDL GR+G L +A E++  MP+   + +  T LGAC++H N  +G+ AAE +LE  P
Sbjct: 492 ACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDP 551

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            +   Y+L++N++A+ G W+++A++R  M++  + K  GC+W++  N    F V DTS+ 
Sbjct: 552 HDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHP 611

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEF 699
           QAQEIY  L  L   +K+ GY+   +F
Sbjct: 612 QAQEIYDELDQLALKIKELGYIPSTDF 638



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 213/429 (49%), Gaps = 53/429 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---SFSLYNNACFLV 132
           + + ++  C ++  L+ G+Q H   +  GL+ +  +   LV  YA   +    ++A  + 
Sbjct: 147 TLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVF 206

Query: 133 ENSNIRYPLPWNLLISLYVRD-GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
           +   +   + W  +I+ YV+  G   EA+ ++ +M   +++ ++FT+ SVLKAC  + D+
Sbjct: 207 DRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDI 266

Query: 192 DFGRVVHSCIDACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G  V++ +      S+  V N+L+SMY + G ++ AR+ FD + E++ VS+NT+++AY
Sbjct: 267 WLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAY 326

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           A     +EAF+LF E++  G  VN  T+ ++                             
Sbjct: 327 AKSLNSEEAFELFNEIEGAGTGVNAFTFASL----------------------------- 357

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 L   S +GA+  G++IH   ++  +    ++ NALI+MYSRC ++  A+ +F  
Sbjct: 358 ------LSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNE 411

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             + ++I+W SM++G+     A  +   F +M  +GV PN VT  ++L  C+ V  +  G
Sbjct: 412 MGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEG 471

Query: 431 -KEFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTS 483
            K F      ++M  EH ++     +  +V++  RSG + EA  + + M  + D +   +
Sbjct: 472 LKHF------KSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRT 525

Query: 484 LIAGYGIQG 492
            +    + G
Sbjct: 526 FLGACRVHG 534



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 204/449 (45%), Gaps = 48/449 (10%)

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           N R  + W+ LIS Y  +    EA+  +  M       + + +  V +AC    ++  G+
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 196 VVHSCI--DACHEWSLFVHNALVSMYGK-FGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           ++   +      E  + V  AL+ M+ K  G ++ A ++FD+M +R+ V+W  MI+ +  
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G  ++A  LF++M   G   +  T + +                               
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGV------------------------------- 151

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC---KDLRHAYILFK 369
               + AC+ +G L LG++ H   ++        V  +L+ MY++C     +  A  +F 
Sbjct: 152 ----VSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFD 207

Query: 370 MTAEKSIITWNSMLSGYTHL-DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                ++++W ++++GY     C  E+  LF EM +  V+PN+ T +S+L  CA ++++ 
Sbjct: 208 RMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIW 267

Query: 429 HGKEFHCYI--LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
            G++ +  +  +R A  N    + NSL+ MY+R G +  A+  FD++  ++ V+Y +++ 
Sbjct: 268 LGEQVYALVVKMRLASIN---CVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVN 324

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
            Y        A +LF E+       +  T  ++LS  S  G + +G++   R+    G  
Sbjct: 325 AYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILK-SGFK 383

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKM 575
             L     ++ +Y R G +  A ++  +M
Sbjct: 384 SNLHICNALISMYSRCGNIEAAFQVFNEM 412



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 119/244 (48%), Gaps = 8/244 (3%)

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
           M  ++ +++W++++S Y + + A E+   F +M   G  PN      +   C+   N+  
Sbjct: 1   MGNKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISL 60

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYAR-SGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
           GK    ++L+   F   + +  +L++M+ + +G +  A  VFD M  R+ VT+T +I  +
Sbjct: 61  GKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRF 120

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G  R A+ LF +M  +   PD  T+  V+SAC+  GL+  G +QF  +    G+   
Sbjct: 121 QQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLG-RQFHCLVMKSGLDLD 179

Query: 549 LEHFACMVDLYGRA---GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
           +     +VD+Y +    G ++ A+++  +MP     +  A + G  Q   + G    A E
Sbjct: 180 VCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQ---SGGCDREAIE 236

Query: 606 KLLE 609
             LE
Sbjct: 237 LFLE 240



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 119/276 (43%), Gaps = 36/276 (13%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A   N  +AFE F  I    A   V   +FA ++     + A+ +G+Q+H+  +  G +
Sbjct: 326 YAKSLNSEEAFELFNEIE--GAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFK 383

Query: 107 KNPVLVPKLVTFY-------ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159
            N  +   L++ Y       A+F ++N     + + N+   + W  +I+ + + GF   A
Sbjct: 384 SNLHICNALISMYSRCGNIEAAFQVFNE----MGDGNV---ISWTSMITGFAKHGFATRA 436

Query: 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-------RVVHSCIDACHEWSLFVH 212
           L  + +M    +  +  TY +VL AC  +  +  G       +V H  +     ++    
Sbjct: 437 LETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYA---- 492

Query: 213 NALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQE 268
             +V + G+ G ++ A  L + M  + DA+   T + A   + +  L K A ++ +E   
Sbjct: 493 -CVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDP 551

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
                 ++  N  A      G ++ V E+  +M+ +
Sbjct: 552 HDPAAYILLSNLHASA----GQWEEVAEIRKKMKER 583


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 188/573 (32%), Positives = 311/573 (54%), Gaps = 53/573 (9%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W L+I+ + + G   +A+ ++  M+      D FTY SVL AC E+  +  G+ +
Sbjct: 14  RNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 73

Query: 198 HS-------CIDACHEWSLFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWNTMI 247
           HS        +D C      V  +LV MY K    G VD +R++F++M E + +SW  +I
Sbjct: 74  HSRVIRLGLALDVC------VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAII 127

Query: 248 SAYASKG-LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           +AYA  G   KEA +LF +M    +  N  +++++                         
Sbjct: 128 TAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV------------------------- 162

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                     L AC ++     G++++  AV+        V N+LI+MY+R   +  A  
Sbjct: 163 ----------LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARK 212

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
            F +  EK+++++N+++ GY     +EE+  LF E+  +G+  +  T AS+L   A +  
Sbjct: 213 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 272

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           +  G++ H  +L+   +  +  + N+L+ MY+R G +  A  VF+ M  R+ +++TS+I 
Sbjct: 273 MGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 331

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           G+   G    AL++F +M +   KP+ +T VAVLSACSH G++ EGQK F  M   +GI 
Sbjct: 332 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 391

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606
           P++EH+ACMVDL GR+GLL +A E I  MP    + +W TLLGAC++H NT +G  AAE 
Sbjct: 392 PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEM 451

Query: 607 LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
           +LE  P++   Y+L++N++A+ G W  + K+R  M++  + K  GC+W++  N    F V
Sbjct: 452 ILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHV 511

Query: 667 DDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            +TS+ QA +IY  L  L   +K+ GY+   +F
Sbjct: 512 GETSHPQAWQIYQELDQLASKIKEMGYIPDTDF 544



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 237/489 (48%), Gaps = 61/489 (12%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G    A + F  + ++    D    +++ ++  C ++  LA GKQLH+  I LGL 
Sbjct: 26  FAQLGCARDAIDLFLDMELSGYVPDRF--TYSSVLSACTELGLLALGKQLHSRVIRLGLA 83

Query: 107 KNPVLVPKLVTFYASFSL---YNNACFLVENSNIRYPLPWNLLISLYVRDG-FYAEALCV 162
            +  +   LV  YA  +     +++  + E       + W  +I+ Y + G    EA+ +
Sbjct: 84  LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIEL 143

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-FVHNALVSMYGK 221
           + +M S  IR ++F++ SVLKACG + D   G  V+S        S+  V N+L+SMY +
Sbjct: 144 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR 203

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G+++ AR+ FD + E++ VS+N ++  YA     +EAF LF E+ + G+ ++  T+ ++
Sbjct: 204 SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASL 263

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L   + +GA+  G++IHG  ++G Y
Sbjct: 264 -----------------------------------LSGAASIGAMGKGEQIHGRLLKGGY 288

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
              + + NALI+MYSRC ++  A+ +F    ++++I+W SM++G+     A  +  +F +
Sbjct: 289 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 348

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEM 456
           M  +G +PN +T  ++L  C+ V  +  G++        +M+ EH ++     +  +V++
Sbjct: 349 MLETGTKPNEITYVAVLSACSHVGMISEGQKHF-----NSMYKEHGIVPRMEHYACMVDL 403

Query: 457 YARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE---GRVALKLFEEMNKNQIKPD 512
             RSG + EA    + M    D + + +L+    + G    GR A ++  E      +PD
Sbjct: 404 LGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ-----EPD 458

Query: 513 HVTMVAVLS 521
                 +LS
Sbjct: 459 DPAAYILLS 467



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 194/405 (47%), Gaps = 52/405 (12%)

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A ++FDKM ER+ V+W  MI+ +A  G  ++A  LF++M+  G   +  T++++      
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV------ 57

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        L AC+ +G L LGK++H   +R        V
Sbjct: 58  -----------------------------LSACTELGLLALGKQLHSRVIRLGLALDVCV 88

Query: 348 RNALITMYSRCK---DLRHAYILFKMTAEKSIITWNSMLSGYTHL-DCAEESAFLFREMF 403
             +L+ MY++C     +  +  +F+   E ++++W ++++ Y    +C +E+  LF +M 
Sbjct: 89  GCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI 148

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
              + PN+ + +S+L  C  +++   G++ + Y ++  + + +  + NSL+ MYARSG++
Sbjct: 149 SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN-CVGNSLISMYARSGRM 207

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A+  FD++  ++ V+Y +++ GY    +   A  LF E+    I     T  ++LS  
Sbjct: 208 EDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGA 267

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           +  G + +G++   R+  + G +   +     ++ +Y R G +  A ++  +M      +
Sbjct: 268 ASIGAMGKGEQIHGRL--LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 325

Query: 583 MWATLLGACQIHRNTGIGEWAAE---KLLE--TRPENSGYYVLIA 622
            W +++     H   G    A E   K+LE  T+P    Y  +++
Sbjct: 326 -WTSMITGFAKH---GFATRALEMFHKMLETGTKPNEITYVAVLS 366



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 111/242 (45%), Gaps = 24/242 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY-------ASFSLYNNA 128
           +FA ++     + A+ +G+Q+H   +  G + N  +   L++ Y       A+F ++N  
Sbjct: 259 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE- 317

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
              +E+ N+   + W  +I+ + + GF   AL ++ +M     + +  TY +VL AC  +
Sbjct: 318 ---MEDRNV---ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 371

Query: 189 MDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNT 245
             +  G+   + +   H     +  +  +V + G+ G +  A    + M L  DA+ W T
Sbjct: 372 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 431

Query: 246 MISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           ++ A   + +  L + A ++ +E + +     ++  N  A      G +K V+++   M+
Sbjct: 432 LLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA----GQWKDVVKIRKSMK 487

Query: 303 TQ 304
            +
Sbjct: 488 ER 489


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 202/643 (31%), Positives = 324/643 (50%), Gaps = 57/643 (8%)

Query: 59  AFTRIRITAASHDVVLDSFA-HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVT 117
            FT +  + ++H     SF+ H +    K+  L  GKQLHA  I LG      L  +++ 
Sbjct: 62  GFTXLVDSCSTH-----SFSSHALKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLH 116

Query: 118 FYASFSLYNNACFLVENSNIRYPLPWNLLIS---------LYVRDGFYAEALCVYKQMQS 168
            Y     +N+ C + +   ++  + WN LI            VR GF+      ++QM  
Sbjct: 117 VYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHC-----FRQMVL 171

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDV 227
             +  +  T   +L+A  E+ DV   R +H  I  +  + + FV +ALV  Y KFG VD 
Sbjct: 172 EMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDE 231

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A+  FD++  RD V WN M+S YA  G+  +AF +F  M+ EGV+ +  T+ ++   C  
Sbjct: 232 AQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSC-- 289

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                GV                      LG+C       LGK++HG  +R  +     V
Sbjct: 290 -----GV----------------------LGSCG------LGKQVHGLIIRLSFDLDVLV 316

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            +AL+ MYS+ +++  A   F     K+I++W +M  GY      +E   L +EM R   
Sbjct: 317 ASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYT 376

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            P+ + +ASIL  C  ++      + H Y++    F   L + N+LV  Y++ G +  A 
Sbjct: 377 YPDELALASILSSCGNLSATSEVVQVHAYVVENG-FEAFLSIANALVSAYSKCGSIGSAF 435

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
             F  ++  D +++TSL+  Y   G  +  + +FE++  + ++PD V  + VLSAC+H G
Sbjct: 436 QSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGG 495

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            V+EG   F  M ++Y I P  EH+  ++DL GRAG L++A  ++T MP  P S      
Sbjct: 496 FVLEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAF 555

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC+++RN G+  WA+EKL    P   G Y L++NMYA+ G W  +A+VR  MR+    
Sbjct: 556 LGACKVYRNVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDF 615

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           K+PGC+W++       F+  D ++ +A ++Y +L  L  LMK+
Sbjct: 616 KVPGCSWMETAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMKE 658



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 3/244 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   KAF  F  +R+     D    +F  +I  CG + +   GKQ+H   I L  +
Sbjct: 254 YALNGVQGKAFGVFKLMRLEGVKGDXF--TFTSMINSCGVLGSCGLGKQVHGLIIRLSFD 311

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + ++   LV  Y+      +A    +   ++  + W  +   Y + G   E + + ++M
Sbjct: 312 LDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEM 371

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
                  D     S+L +CG +        VH+  ++   E  L + NALVS Y K G +
Sbjct: 372 IRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSI 431

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A + F  + E D +SW +++ AYA  GL K+   +F ++    V  + + +  +   C
Sbjct: 432 GSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSAC 491

Query: 286 LRTG 289
              G
Sbjct: 492 AHGG 495


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 302/559 (54%), Gaps = 42/559 (7%)

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
           +P   + ++++++ D    EAL     M  R +  +   Y +VL  C     +  G+ VH
Sbjct: 25  FPSNSHHVLNIHIHDTRLREALL---HMALRGLDTNFQDYNTVLNECLRKRAIREGQRVH 81

Query: 199 SCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
           + +   H    +++   L+  Y K   +  AR +FD M ER+ VSW  MISAY+ +G   
Sbjct: 82  AHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYAS 141

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           +A  LFV+M   G E N  T+ T+   C+ +  F                          
Sbjct: 142 QALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGF-------------------------- 175

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
                     LG++IH   ++  Y  +  V ++L+ MY++   +  A  +F+   E+ ++
Sbjct: 176 ---------VLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVV 226

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +  +++SGY  L   EE+  LFR + R G++ NYVT  S+L   + +A L HGK+ H ++
Sbjct: 227 SCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHL 286

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           LR  +   +++L NSL++MY++ G +  A+ +FD +  R  +++ +++ GY   GEGR  
Sbjct: 287 LRSEV-PSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREV 345

Query: 498 LKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS-IYGIFPQLEHFACM 555
           L+LF  M ++N++KPD VT++AVLS CSH GL  +G   F  MTS    + P  +H+ C+
Sbjct: 346 LELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCV 405

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VD+ GRAG +  A E + KMP+ P++A+W  LLGAC +H N  IGE+   +LL+  PEN+
Sbjct: 406 VDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENA 465

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G YV+++N+YA+ G W+ +  +R  M    V K PG +W++   V   F   D S+ + +
Sbjct: 466 GNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRRE 525

Query: 676 EIYPLLGGLTELMKDAGYV 694
           E+   +  L+   K+AGYV
Sbjct: 526 EVSAKVQELSARFKEAGYV 544



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 204/441 (46%), Gaps = 51/441 (11%)

Query: 29  PINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVK 88
           P N+ H++ I++ +T           +  EA   + +     D     +  ++  C + +
Sbjct: 26  PSNSHHVLNIHIHDT-----------RLREALLHMALRGL--DTNFQDYNTVLNECLRKR 72

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           A+ +G+++HA  I         L  +L+ FY       +A  + +    R  + W  +IS
Sbjct: 73  AIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMIS 132

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
            Y + G+ ++AL ++ QM       + FT+ +VL +C        GR +HS  I   +E 
Sbjct: 133 AYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEA 192

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            ++V ++L+ MY K G++  AR +F  + ERD VS   +IS YA  GL +EA +LF  +Q
Sbjct: 193 HVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQ 252

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
            EG++ N +T+ ++                                   L A S + AL 
Sbjct: 253 REGMQSNYVTYTSV-----------------------------------LTALSGLAALD 277

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            GK++H   +R     Y  ++N+LI MYS+C +L +A  +F    E+++I+WN+ML GY+
Sbjct: 278 HGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYS 337

Query: 388 HLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKE-FHCYILRRAMFNE 445
                 E   LF  M   + V+P+ VT+ ++L  C+       G + F+     +     
Sbjct: 338 KHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQP 397

Query: 446 HLLLWNSLVEMYARSGKVPEA 466
               +  +V+M  R+G+V  A
Sbjct: 398 DSKHYGCVVDMLGRAGRVEAA 418



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 19/214 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   +A E F R++      + V  ++  ++     + AL  GKQ+H   +   + 
Sbjct: 235 YAQLGLDEEALELFRRLQREGMQSNYV--TYTSVLTALSGLAALDHGKQVHNHLLRSEVP 292

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
              VL   L+  Y+       A  + +  + R  + WN ++  Y + G   E L ++  M
Sbjct: 293 SYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLM 352

Query: 167 -QSRRIRGDNFTYPSVLKACG------EMMDVDFGRV---VHSCIDACHEWSLFVHNALV 216
               +++ D+ T  +VL  C       + MD+ +      +    D+ H      +  +V
Sbjct: 353 IDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKH------YGCVV 406

Query: 217 SMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            M G+ G+V+ A     KM  E  A  W  ++ A
Sbjct: 407 DMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGA 440


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 205/645 (31%), Positives = 331/645 (51%), Gaps = 40/645 (6%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           +L  A  AF  + +++A    VL +F  ++  C     LA G+ +HA   A G++   + 
Sbjct: 39  DLPAALAAF--VAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALA 96

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR- 170
              L   YA      +A  + +   +R  + WN L++ Y R+G    A+ +  +MQ    
Sbjct: 97  ATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEG 156

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
            R D+ T  SVL AC     +   R  H+  I +  E  + V  A++  Y K G +  AR
Sbjct: 157 ERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAAR 216

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +FD M  +++VS                                   WN +  G  + G
Sbjct: 217 VVFDWMPTKNSVS-----------------------------------WNAMIDGYAQNG 241

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
           + +  L L +RM  +   +  V+ +  L AC  +G L  G  +H   VR       +V N
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMN 301

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           ALITMYS+CK +  A  +F     ++ ++WN+M+ G     C+E++  LF  M    V+P
Sbjct: 302 ALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKP 361

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           +  T+ S++P  A +++    +  H Y +R  + ++ + +  +L++MYA+ G+V  A+ +
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHL-DQDVYVLTALIDMYAKCGRVNIARIL 420

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+    R  +T+ ++I GYG  G G+ A++LFEEM    I P+  T ++VLSACSH+GLV
Sbjct: 421 FNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLV 480

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG++ F  M   YG+ P +EH+  MVDL GRAG L++A   I KMP  P  +++  +LG
Sbjct: 481 DEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLG 540

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++H+N  + E +A+K+ E  P+   Y+VL+AN+YA    W  +A+VRT M   G++K 
Sbjct: 541 ACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKT 600

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           PG + +   N    F    T++ QA+EIY  L  L E +K  GYV
Sbjct: 601 PGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYV 645


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 313/564 (55%), Gaps = 27/564 (4%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+   +DG   EA  ++ +M+      D  T+ +V+    +   ++  R +   +DA
Sbjct: 71  NWMITNLSKDGRIMEARRLFDEMRE----PDVITWTTVISGYIKCGMIEEARRLFDRVDA 126

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             + ++    A+V  Y +  ++  A +LF++M  ++ VSWNTMI  YA  G    A  LF
Sbjct: 127 --KKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLF 184

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            +M E     NV++WNT+     + G  +    L  RM  ++  +   A + GL      
Sbjct: 185 EKMPER----NVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV-ISWTAMIAGLLD---- 235

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
            AL L + +    +           N +IT   +  DLR A  LF    +K++I+W +M+
Sbjct: 236 EALDLFERMPERDLPSW--------NTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMI 287

Query: 384 SGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +G      +EE+  +F  M  + G +PN  T  S+L  C+ +A L  G++ H  I+ + +
Sbjct: 288 TGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVH-QIISKTV 346

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
           + +   + ++L+ MY++ G++  A+ +FD  + S+RD V++  +IA Y   G G+ A+  
Sbjct: 347 YQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINF 406

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F+EM K+  KPD VT V +LSACSH+GLV EG K F+ +     I  + +H+AC+VDL G
Sbjct: 407 FKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCG 466

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           RAG L +A   I ++   P++ +W  LL  C +H N  IG+ AA+KLLE  PEN+G Y+L
Sbjct: 467 RAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLL 526

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           ++N+YA+TG W + A+VR  M+D G++K PGC+W++ GN    F+V D S+ Q++ IY L
Sbjct: 527 LSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSL 586

Query: 681 LGGLTELMKDAGYVVKEEFCSEEE 704
           L  L   MK AGY    +F S+E+
Sbjct: 587 LRDLHSKMKKAGYEPNNDFISDED 610



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 212/427 (49%), Gaps = 36/427 (8%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +KN V    +V  Y   +  ++A  L      +  + WN +I  Y ++G    A+ ++++
Sbjct: 127 KKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEK 186

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           M  R +   N T  S+L  CG + +           D   E  +    A+++     G +
Sbjct: 187 MPERNVVSWN-TVMSMLAQCGRIEE------ARRLFDRMPERDVISWTAMIA-----GLL 234

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D A  LF++M ERD  SWNTMI+     G  + A +LF EM ++    NVI+W T+  GC
Sbjct: 235 DEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKK----NVISWTTMITGC 290

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEY 344
           ++ G  +  L++ SRM +      +  T +  LGACS++  L  G+++H    +  Y + 
Sbjct: 291 VQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDS 350

Query: 345 ENVRNALITMYSRCKDLRHAYILFK--MTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
             V +ALI MYS+C +L  A  +F   MT+++ +++WN +++ Y H    +E+   F+EM
Sbjct: 351 TFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEM 410

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHG-KEFHCYILRRAMF--NEHLLLWNSLVEMYAR 459
            +SG +P+ VT   +L  C+    ++ G K F   +  R++    +H   +  LV++  R
Sbjct: 411 RKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDH---YACLVDLCGR 467

Query: 460 SGKVPEAKSVFD-LMSRRDEVTYTSLIAGYGIQGEGRV----ALKLFEEMNKNQIKPDHV 514
           +G++ EA    + L ++     + +L+AG  +    ++    A KL E      ++P++ 
Sbjct: 468 AGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLE------VEPENA 521

Query: 515 TMVAVLS 521
               +LS
Sbjct: 522 GTYLLLS 528



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 185/413 (44%), Gaps = 46/413 (11%)

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           +  ++ + R+ F   ++ +    N MI+  +  G   EA +LF EM+E     +VITW T
Sbjct: 50  RTAKISIPRKDF--TVDGNVARCNWMITNLSKDGRIMEARRLFDEMREP----DVITWTT 103

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG-ALKLGKEIHGSAVRG 339
           +  G ++ G  +    L  R+  ++  +   A V G    + +  A KL  E+    V  
Sbjct: 104 VISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVS 163

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                    N +I  Y++   +  A  LF+   E+++++WN+++S        EE+  LF
Sbjct: 164 W--------NTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLF 215

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
             M    V      IA +L                   L   M    L  WN+++    +
Sbjct: 216 DRMPERDVISWTAMIAGLLD--------------EALDLFERMPERDLPSWNTMITGLIQ 261

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVA 518
           +G +  A+ +F+ M +++ +++T++I G   +GE   ALK+F  M + N  KP+  T V+
Sbjct: 262 NGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVS 321

Query: 519 VLSACSHSGLVVEGQKQFERMT-SIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITK- 574
           VL ACS+   + EGQ+  + ++ ++Y    Q   F  + ++++Y + G L  A+++    
Sbjct: 322 VLGACSNLAGLGEGQQVHQIISKTVY----QDSTFVVSALINMYSKCGELGTARKMFDDG 377

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR-----PENSGYYVLIA 622
           M        W  ++ A   H   G G+ A     E R     P++  Y  L++
Sbjct: 378 MTSQRDLVSWNGIIAAYAHH---GYGKEAINFFKEMRKSGFKPDDVTYVGLLS 427



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 115/261 (44%), Gaps = 40/261 (15%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   +A + F+R+  T  +      +F  ++  C  +  L +G+Q+H        + +  
Sbjct: 294 GESEEALKIFSRMLSTNGAKPN-QGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTF 352

Query: 111 LVPKLVTFYASFSLYNNACFLVEN--SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
           +V  L+  Y+       A  + ++  ++ R  + WN +I+ Y   G+  EA+  +K+M+ 
Sbjct: 353 VVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRK 412

Query: 169 RRIRGDNFTYPSVLKACGEMMDVD-----FGRVV-----------HSC-IDAC------- 204
              + D+ TY  +L AC     V+     F  +V           ++C +D C       
Sbjct: 413 SGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLK 472

Query: 205 ----------HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYA 251
                      + S  V  AL++       V + ++   K+LE    +A ++  + + YA
Sbjct: 473 EAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYA 532

Query: 252 SKGLWKEAFQLFVEMQEEGVE 272
           S G W+EA ++ ++M+++G++
Sbjct: 533 STGKWREAARVRLKMKDKGLK 553


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 203/609 (33%), Positives = 316/609 (51%), Gaps = 76/609 (12%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFS---LYNNACFLVENSNIRYPLPWNLLISLY 150
           K +H+    L   +NP L  KL+  YA+     L  N   ++   N+ +   +N++I  Y
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIF---YNVMIRSY 108

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSL 209
           + +  Y +AL V++ M S     D++TYP VLKAC    ++  G  +H  +     + +L
Sbjct: 109 MNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNL 168

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           FV N L+++YGK G +  AR + D                               EMQ +
Sbjct: 169 FVGNGLIALYGKCGCLPEARCVLD-------------------------------EMQSK 197

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
               +V++WN++  G  +   F   L++   M       D+      L A ++  +    
Sbjct: 198 ----DVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSS---- 249

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
                          ENV               +   +F    +KS+++WN M+S Y   
Sbjct: 250 ---------------ENVL--------------YVEEMFMNLEKKSLVSWNVMISVYMKN 280

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
               +S  L+ +M +  VEP+ +T AS+L  C  ++ L  G+  H Y+ R+ +   ++LL
Sbjct: 281 SMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLC-PNMLL 339

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            NSL++MYAR G + +AK VFD M  RD  ++TSLI+ YG+ G+G  A+ LF EM  +  
Sbjct: 340 ENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQ 399

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            PD +  VA+LSACSHSGL+ EG+  F++MT  Y I P +EHFAC+VDL GR+G +++A 
Sbjct: 400 SPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAY 459

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
            II +MP  P   +W  LL +C+++ N  IG  AA+KLL+  PE SGYYVL++N+YA  G
Sbjct: 460 NIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAG 519

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W ++  +R+ M+   +RK+PG + V+  N    FL  DT + Q++EIY  L  L   MK
Sbjct: 520 RWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMK 579

Query: 690 DAGYVVKEE 698
           + GYV K +
Sbjct: 580 ELGYVPKTD 588



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 154/340 (45%), Gaps = 38/340 (11%)

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           +K  K +H       + E  ++   L+  Y+   +   A  +F +  E+++I +N M+  
Sbjct: 48  IKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRS 107

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           Y +    +++  +FR+M   G  P++ T   +L  C+   NL+ G + H  + +  + + 
Sbjct: 108 YMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGL-DL 166

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           +L + N L+ +Y + G +PEA+ V D M  +D V++ S++AGY    +   AL +  EM+
Sbjct: 167 NLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMD 226

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH-----FACMVDLYG 560
             + KPD  TM ++L A +++          E +  +  +F  LE      +  M+ +Y 
Sbjct: 227 GVRQKPDACTMASLLPAVTNTS--------SENVLYVEEMFMNLEKKSLVSWNVMISVYM 278

Query: 561 RAGLLNKAKEIITKM---PYTPTSAMWATLLGAC----------QIHRNTGIGEWAAEKL 607
           +  +  K+ ++  +M      P +   A++L AC          +IH      +     L
Sbjct: 279 KNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNML 338

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKV--RTCMRDLG 645
           LE           + +MYA  GC +   +V  R   RD+ 
Sbjct: 339 LENS---------LIDMYARCGCLEDAKRVFDRMKFRDVA 369



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 155/401 (38%), Gaps = 67/401 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C     L  G QLH     +GL+ N  +   L+  Y        A  +++  
Sbjct: 135 TYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEM 194

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +++ Y ++  + +AL + ++M   R + D  T  S+L A           
Sbjct: 195 QSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPA----------- 243

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
                 +   E  L+V                   +F  + ++  VSWN MIS Y    +
Sbjct: 244 ----VTNTSSENVLYV-----------------EEMFMNLEKKSLVSWNVMISVYMKNSM 282

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             ++  L+++M +  VE + IT  ++                                  
Sbjct: 283 PGKSVDLYLQMGKCEVEPDAITCASV---------------------------------- 308

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L AC  + AL LG+ IH    R        + N+LI MY+RC  L  A  +F     + 
Sbjct: 309 -LRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRD 367

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           + +W S++S Y        +  LF EM  SG  P+ +   +IL  C+    L  GK +  
Sbjct: 368 VASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFK 427

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
            +         +  +  LV++  RSG+V EA ++   M  +
Sbjct: 428 QMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMK 468



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 78  AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI 137
           A ++  CG + AL  G+++H       L  N +L   L+  YA      +A  + +    
Sbjct: 306 ASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKF 365

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R    W  LIS Y   G    A+ ++ +MQ+     D+  + ++L AC     ++ G+  
Sbjct: 366 RDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFY 425

Query: 198 HSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
              +   ++ +  + +   LV + G+ G+VD A  +  +M ++ +   W  ++S+
Sbjct: 426 FKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSS 480


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 178/518 (34%), Positives = 291/518 (56%), Gaps = 38/518 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y  +L  C  +  +  GR +H+ I +   E  L + N +++MY K G ++ A+ LFDKM 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            +D VSW  +IS Y+  G   EA  LF +M   G + N  T                   
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFT------------------- 208

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                      L S+    G G   H      G+++H  +++  Y    +V ++L+ MY+
Sbjct: 209 -----------LSSLLKASGTGPSDH-----HGRQLHAFSLKYGYDMNVHVGSSLLDMYA 252

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           R   +R A ++F   A K++++WN++++G+      E    LF +M R G EP + T +S
Sbjct: 253 RWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSS 312

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +   CA   +L+ GK  H ++++         + N+L++MYA+SG + +AK VF  + ++
Sbjct: 313 VFTACASSGSLEQGKWVHAHVIKSGG-QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQ 371

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D V++ S+I+GY   G G  AL+LFE+M K +++P+ +T ++VL+ACSHSGL+ EGQ  F
Sbjct: 372 DIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYF 431

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           E M   + I  Q+ H   +VDL GRAG LN+A + I +MP  PT+A+W  LLG+C++H+N
Sbjct: 432 ELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKN 490

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             +G +AAE++ E  P +SG +VL++N+YA+ G     AKVR  M++ GV+K P C+WV+
Sbjct: 491 MDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVE 550

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             N    F+ +D S+   +EI  +   ++  +K+ GYV
Sbjct: 551 IENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYV 588



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 188/391 (48%), Gaps = 37/391 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  ++ L QG+ +HA   +   E + VL+  ++  YA       A  L +    +  + W
Sbjct: 115 CTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSW 174

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
            +LIS Y + G  +EAL ++ +M     + + FT  S+LKA G       GR +H+  + 
Sbjct: 175 TVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLK 234

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
             ++ ++ V ++L+ MY ++  +  A+ +F+ +  ++ VSWN +I+ +A KG  +   +L
Sbjct: 235 YGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRL 294

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F++M  +G E    T++++                                     AC+ 
Sbjct: 295 FLQMLRQGFEPTHFTYSSV-----------------------------------FTACAS 319

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            G+L+ GK +H   ++        + N LI MY++   ++ A  +F+   ++ I++WNS+
Sbjct: 320 SGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSI 379

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SGY       E+  LF +M ++ V+PN +T  S+L  C+    L  G +++  ++++  
Sbjct: 380 ISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEG-QYYFELMKKHK 438

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
               +    ++V++  R+G++ EA    + M
Sbjct: 439 IEAQVAHHVTVVDLLGRAGRLNEANKFIEEM 469



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 2/176 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +++ +   C    +L QGK +HA  I  G +    +   L+  YA      +A  +    
Sbjct: 309 TYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 368

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +IS Y + G  AEAL +++QM   +++ +  T+ SVL AC     +D G+
Sbjct: 369 VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQ 428

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
                +     E  +  H  +V + G+ G+++ A +  ++M ++  A  W  ++ +
Sbjct: 429 YYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGS 484


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 194/606 (32%), Positives = 307/606 (50%), Gaps = 43/606 (7%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
            +G Q+H   +  GL+K   +   L+  Y        A  L + + ++  + WN +IS Y
Sbjct: 215 GRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGY 274

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSL 209
             +G   EAL ++  M+   +R    ++ S++K C  + ++ F   +H S +     +  
Sbjct: 275 AANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQ 334

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
            +  AL+  Y K   +  A RLF +     + VSW  MIS +      +EA  LF EM+ 
Sbjct: 335 NIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKR 394

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           +GV  N  T++ I                        T L  ++                
Sbjct: 395 KGVRPNEFTYSVIL-----------------------TALPVISP--------------- 416

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
             E+H   V+  Y     V  AL+  Y +   +  A  +F     K I+ W++ML+GY  
Sbjct: 417 -SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQ 475

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCA-RVANLQHGKEFHCYILRRAMFNEHL 447
               E +  +F E+ + GV+PN  T +SIL +CA   A++  GK+FH + ++ +  +  L
Sbjct: 476 AGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIK-SRLDSSL 534

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + ++L+ MYA+ G +  A+ VF     +D V++ S+I+GY   G+   AL +F+EM K 
Sbjct: 535 CVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 594

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
           ++K D VT + V +AC+H+GLV EG+K F+ M     I P  EH +CMVDLY RAG L K
Sbjct: 595 KVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 654

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A ++I  MP    S +W T+L AC++H+ T +G  AAEK++   PE+S  YVL++NMYA 
Sbjct: 655 AMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAE 714

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
           +G W + AKVR  M +  V+K PG +W++  N    FL  D S+    +IY  L  L+  
Sbjct: 715 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTR 774

Query: 688 MKDAGY 693
           +KD GY
Sbjct: 775 LKDLGY 780



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/488 (27%), Positives = 236/488 (48%), Gaps = 50/488 (10%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+QLH   I  G   +  +   LV  Y   S + +   + +    R  + W  LIS Y R
Sbjct: 116 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYAR 175

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFV 211
           +    E L ++ +MQ    + ++FT+ + L    E      G  VH+  +    + ++ V
Sbjct: 176 NSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 235

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N+L+++Y K G V  AR LFDK   +  V+WN+MIS YA+ GL  EA  +F  M+    
Sbjct: 236 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR---- 291

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
                                     L+ +R  E+   S A++I L  C+++  L+  ++
Sbjct: 292 --------------------------LNHVRLSES---SFASIIKL--CANLKELRFTEQ 320

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA-EKSIITWNSMLSGYTHLD 390
           +H S V+  +   +N+R AL+  YS+C  +  A  LFK T    ++++W +M+SG+   D
Sbjct: 321 LHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQND 380

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             EE+  LF EM R GV PN  T + IL     ++      E H  ++ +  +     + 
Sbjct: 381 GKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVIS----PSEVHAQVV-KTNYERSSTVG 435

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            +L++ Y + GKV EA  VF  +  +D V +++++AGY   GE   A+K+F E+ K  +K
Sbjct: 436 TALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVK 495

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC----MVDLYGRAGLLN 566
           P+  T  ++L+ C+ +   +   KQF      + I  +L+   C    ++ +Y + G + 
Sbjct: 496 PNEFTFSSILNVCAATTASMGQGKQFHG----FAIKSRLDSSLCVSSALLTMYAKKGHIE 551

Query: 567 KAKEIITK 574
            A+E+  +
Sbjct: 552 SAEEVFKR 559



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 193/404 (47%), Gaps = 48/404 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS-FSLYNNACFLVEN 134
           SFA II  C  +K L   +QLH   +  G   +  +   L+  Y+   ++ +      E 
Sbjct: 301 SFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKET 360

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             +   + W  +IS ++++    EA+ ++ +M+ + +R + FTY  +L A    + V   
Sbjct: 361 GFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA----LPVISP 416

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             VH+  +   +E S  V  AL+  Y K G+VD A ++F  +  +D V+W+ M++ YA  
Sbjct: 417 SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQA 476

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G  + A ++F E+ + GV+ N  T+++I   C                          AT
Sbjct: 477 GETEAAIKIFSELTKGGVKPNEFTFSSILNVC-------------------------AAT 511

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              +G          GK+ HG A++        V +AL+TMY++   +  A  +FK   E
Sbjct: 512 TASMGQ---------GKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQRE 562

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K +++WNSM+SGY     A ++  +F+EM +  V+ + VT   +   C     ++ G+++
Sbjct: 563 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKY 622

Query: 434 HCYILRR---AMFNEHLLLWNS-LVEMYARSGKVPEAKSVFDLM 473
              ++R    A   EH    NS +V++Y+R+G++ +A  V D M
Sbjct: 623 FDIMVRDCKIAPTKEH----NSCMVDLYSRAGQLEKAMKVIDNM 662



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 218/473 (46%), Gaps = 61/473 (12%)

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           L + S  R    +  L+  + RDG   EA  ++  +Q   +  D   + SVLK    + D
Sbjct: 53  LFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCD 112

Query: 191 VDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
             FGR +H  CI                   KFG +D            D     +++  
Sbjct: 113 ELFGRQLHCQCI-------------------KFGFLD------------DVSVGTSLVDT 141

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           Y     +K+   +F EM+E     NV+TW T+  G  R    + VL L  RM+ + T  +
Sbjct: 142 YMKGSNFKDGRNVFDEMKER----NVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPN 197

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           S      LG  +  G    G ++H   V+    +   V N+LI +Y +C ++R A ILF 
Sbjct: 198 SFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFD 257

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
            T  KS++TWNSM+SGY       E+  +F  M  + V  +  + ASI+ LCA +  L+ 
Sbjct: 258 KTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRF 317

Query: 430 GKEFHCYILRRA-MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
            ++ HC +++   +F++++    +L+  Y++   + +A  +F       + V++T++I+G
Sbjct: 318 TEQLHCSVVKYGFVFDQNIR--TALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISG 375

Query: 488 YGIQGEGR-VALKLFEEMNKNQIKPDHVTMVAVLSACS-------HSGLVVEGQKQFERM 539
           + +Q +G+  A+ LF EM +  ++P+  T   +L+A         H+ +V   +  +ER 
Sbjct: 376 F-LQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVV---KTNYERS 431

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           +++            ++D Y + G +++A ++ + +      A  A L G  Q
Sbjct: 432 STVG---------TALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQ 475



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 76  SFAHIIFCCGKVKA-LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +F+ I+  C    A + QGKQ H  AI   L+ +  +   L+T YA      +A  + + 
Sbjct: 500 TFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKR 559

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
              +  + WN +IS Y + G   +AL V+K+M+ R+++ D+ T+  V  AC     V+ G
Sbjct: 560 QREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEG 619

Query: 195 -RVVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISA 249
            +     +  C       HN+ +V +Y + GQ++ A ++ D M     +  W T+++A
Sbjct: 620 EKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAA 677


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 198/653 (30%), Positives = 344/653 (52%), Gaps = 23/653 (3%)

Query: 62  RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS 121
           R+  +AA  D  +  + H++    +++   Q KQLHA  I   +     L  KLV  Y+ 
Sbjct: 14  RLLTSAAGLDCGI--YGHLLHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSK 71

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
            +    A ++ +    +    +N ++  Y     + +AL ++  + S  +  +N +   +
Sbjct: 72  TNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLASSNLV-NNISITCL 130

Query: 182 LKACGE--MMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER 238
           LK+     + DV  G+ VH   +    +  +FV NAL++ Y K   +D++R++FD+M +R
Sbjct: 131 LKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKR 190

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQE-EGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           D VSWN+MIS Y+  GL+++   L+ EM +  G   N +T  ++   C +T +    +E+
Sbjct: 191 DVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEV 250

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
              +   +  +D       +G  +  G+L   +E+           Y  + + L+     
Sbjct: 251 HKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLML---- 306

Query: 358 CKDLRHAYI-----LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
                H Y+     LF+    + + TWN++++G    +  E    L REM   G  PN V
Sbjct: 307 -----HGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAV 361

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T++S+L   A  ++L+ GKE H Y ++   ++ ++ +  ++++MYA+SG +  A+ VFD 
Sbjct: 362 TLSSVLSTIAYFSSLKGGKEIHSYAIKIG-YHRNIYVATAIIDMYAKSGYLRGAQRVFDQ 420

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
              R  V +T++I+ Y + G+  +AL LF EM K  I+PD VT  AVL+AC+H G+V + 
Sbjct: 421 SKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKA 480

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            + FE M   YGI P +EH+AC+V   G+A  L++AKE ++KMP  P++ +W  LL    
Sbjct: 481 WEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWGALLHGAS 540

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           I  +  +G+   + L E  PEN+G YV++AN+Y+  G W +  +VR  M  +G++KIPG 
Sbjct: 541 ISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVGLQKIPGS 600

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEI 705
           +W++       F+  DT     +EI+ +L GL  LM+D G V+ ++   EE I
Sbjct: 601 SWIETSEGLRSFIATDTCTENVEEIHVILKGLLGLMRDEGKVL-QDMLDEESI 652


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 202/631 (32%), Positives = 314/631 (49%), Gaps = 51/631 (8%)

Query: 79  HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIR 138
           H++    K+K+L    Q+H+  +      +   +  L+  YA     ++   L       
Sbjct: 102 HLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNT---- 157

Query: 139 YPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           YP P      W  LI+   R     +AL  + +M++  I  ++FT+ ++L AC     + 
Sbjct: 158 YPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLS 217

Query: 193 FGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G+ +H+ I   C     FV  AL+ MY K G + +A  +FD+M  R+ VSWN+MI  + 
Sbjct: 218 EGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFV 277

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
              L+  A  +F E+   G                                      D V
Sbjct: 278 KNKLYGRAIGVFREVLSLGP-------------------------------------DQV 300

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAV-RGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           +    L AC+ +  L  GK++HGS V RG  G    V+N+L+ MY +C     A  LF  
Sbjct: 301 SISSVLSACAGLVELDFGKQVHGSIVKRGLVG-LVYVKNSLVDMYCKCGLFEDATKLFCG 359

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             ++ ++TWN M+ G       E++   F+ M R GVEP+  + +S+    A +A L  G
Sbjct: 360 GGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQG 419

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
              H ++L+     ++  + +SLV MY + G + +A  VF      + V +T++I  +  
Sbjct: 420 TMIHSHVLKTGHV-KNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQ 478

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G    A+KLFEEM    + P+++T V+VLSACSH+G + +G K F  M +++ I P LE
Sbjct: 479 HGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLE 538

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ACMVDL GR G L +A   I  MP+ P S +W  LLGAC  H N  +G   AE+L + 
Sbjct: 539 HYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKL 598

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P+N G Y+L++N+Y   G  ++  +VR  M   GVRK  GC+W+D  N    F  +D S
Sbjct: 599 EPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRS 658

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEFCS 701
           + + QEIY +L  L EL+K  GYV + +F +
Sbjct: 659 HSRTQEIYGMLQKLKELIKRRGYVAETQFAT 689



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 137/561 (24%), Positives = 243/561 (43%), Gaps = 75/561 (13%)

Query: 43  TLKDFAGRGNLSKAFEA---FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHAC 99
           TL +   R N  K F+A   F R+R T    +    +F+ I+  C     L++G+Q+HA 
Sbjct: 170 TLINQLSRSN--KPFQALTFFNRMRTTGIYPNHF--TFSAILPACAHAALLSEGQQIHAL 225

Query: 100 AIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP----LPWNLLISLYVRDGF 155
                   +P +   L+  YA       +  L EN     P    + WN +I  +V++  
Sbjct: 226 IHKHCFLNDPFVATALLDMYAKCG----SMLLAENVFDEMPHRNLVSWNSMIVGFVKNKL 281

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-FVHNA 214
           Y  A+ V++++ S  +  D  +  SVL AC  ++++DFG+ VH  I       L +V N+
Sbjct: 282 YGRAIGVFREVLS--LGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNS 339

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           LV MY K G  + A +LF    +RD V+WN MI        +++A   F  M  EGVE +
Sbjct: 340 LVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPD 399

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
             +++++                                     A + + AL  G  IH 
Sbjct: 400 EASYSSL-----------------------------------FHASASIAALTQGTMIHS 424

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             ++  + +   + ++L+TMY +C  +  AY +F+ T E +++ W +M++ +    CA E
Sbjct: 425 HVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANE 484

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  LF EM   GV P Y+T  S+L  C+    +  G ++   +         L  +  +V
Sbjct: 485 AIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMV 544

Query: 455 EMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++  R G++ EA    + M    D + + +L+   G      +  ++ E + K  ++PD+
Sbjct: 545 DLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFK--LEPDN 602

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA----------- 562
                +LS       ++E   +  R+  I G+  + E     +D+  R            
Sbjct: 603 PGNYMLLSNIYIRHGMLEEADEVRRLMGINGV--RKESGCSWIDVKNRTFVFNANDRSHS 660

Query: 563 ------GLLNKAKEIITKMPY 577
                 G+L K KE+I +  Y
Sbjct: 661 RTQEIYGMLQKLKELIKRRGY 681


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 204/630 (32%), Positives = 334/630 (53%), Gaps = 55/630 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP----WNLLISLY 150
           QLHA     GL ++P    KL+  YA   ++ ++  + +     +P P    W +LI  Y
Sbjct: 366 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDT----FPKPDSFMWGVLIKCY 421

Query: 151 VRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL 209
           V  GF+ EA+ +Y +M    + +  NF +PSVLKAC    D+  G       +    +S 
Sbjct: 422 VWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQ 481

Query: 210 FVHNAL----VSMY--------------GKFGQVD--------VARRLFDKMLERDAVSW 243
            +  A+    V+M               G+ G+V         V RR  D  L+      
Sbjct: 482 MISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELD---FLG 538

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
             ++  YA  G  ++  ++F  ++E+     +++WNT+     R G  +  L L  +M+T
Sbjct: 539 PALMELYADTGNLRDCHKVFETIKEK----TILSWNTLISIFTRNGQPEEALLLFVQMQT 594

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLR 362
           Q    DS +    L AC  +   +LG +IHG  ++ G + ++  V+NALI MY++C  + 
Sbjct: 595 QGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF--VQNALIDMYAKCGFVH 652

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
            A  +F+   EKS++TWNSM+ G++    + E+  LF +M+ + V+ + +T  S++  C+
Sbjct: 653 SANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACS 712

Query: 423 RVANLQHGKEFH----CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
            +  L+ GK  H     Y LR+  +     L  +L +MY++ G++  A  VFD MS R  
Sbjct: 713 HLGYLEKGKWVHHKLIMYGLRKDSY-----LDTALTDMYSKCGELQMAHGVFDRMSERSI 767

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           V+++ +IAGYG+ G+    + LF +M  + IKP+ +T + +LSACSH+G V EG+  F  
Sbjct: 768 VSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNS 827

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
           M+  +G+ P+ +HFACMVDL  RAG LN A +IIT +P+   S++W  LL  C+IH+   
Sbjct: 828 MSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRID 886

Query: 599 IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
           I +   + LL+    ++GYY L++N+YA  G WDK  KVR+ M+  G+RK+PG + ++  
Sbjct: 887 IIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEID 946

Query: 659 NVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
                F   DTS+ Q ++IY  L     L+
Sbjct: 947 KKIYRFGPGDTSHSQTKDIYRFLENFRSLV 976


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 194/642 (30%), Positives = 323/642 (50%), Gaps = 50/642 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C  +     G+ +H  AI  GL+ +  +   L+  Y   +   +A  +    
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALC--VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             R  + WN +++ Y   G Y  A+   +  QMQ  R+R +  T  ++L    +   +  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 194 GRVVHS-CIDACHEWS----------LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS 242
           G  VH+ CI AC   +          + +  AL+ MY K G +  ARR+FD M  R    
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR---- 302

Query: 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
                                          N +TW+ + GG +          L   M 
Sbjct: 303 -------------------------------NEVTWSALIGGFVLCSRMTQAFLLFKAML 331

Query: 303 TQE-TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
            Q   +L   +    L AC+ +  L++G+++H    +          N+L++MY++   +
Sbjct: 332 AQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 391

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
             A  LF   A K  +++++++SGY     AEE+  +F++M    VEP+  T+ S++P C
Sbjct: 392 DQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 451

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
           + +A LQHG+  H  ++ R + +E   + N+L++MYA+ G++  ++ VF++M  RD V++
Sbjct: 452 SHLAALQHGRCSHGSVIIRGLASE-TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 510

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
            ++IAGYGI G G+ A  LF EMN     PD VT + +LSACSHSGLV+EG+  F  M  
Sbjct: 511 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 570

Query: 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGE 601
            YG+ P++EH+ CMVDL  R G L++A E I  MP      +W  LLGAC++++N  +G+
Sbjct: 571 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 630

Query: 602 WAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVF 661
             +  + E  PE +G +VL++N+Y+A G +D+ A+VR   +  G +K PGC+W++     
Sbjct: 631 KVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 690

Query: 662 SPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
             F+  D S+ Q+ EIY  L  +   +K  GY     F  ++
Sbjct: 691 HAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQD 732



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 228/467 (48%), Gaps = 55/467 (11%)

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNAL 215
           A+ L +Y++M   R+  +N+T+P  LKAC  + D   GR +H   I A  +  LFV  AL
Sbjct: 107 ADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTAL 166

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MY K   +  A  +F  M  RD V+WN M++ YA  G++  A    + MQ +      
Sbjct: 167 LDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQ------ 220

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
                                 + R+R   + L ++  ++     +  GAL  G  +H  
Sbjct: 221 ----------------------MHRLRPNASTLVALLPLL-----AQQGALAQGTSVHAY 253

Query: 336 AVRGCYGEYENVRN----------ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
            +R C     N ++          AL+ MY++C  L +A  +F     ++ +TW++++ G
Sbjct: 254 CIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGG 313

Query: 386 YTHLDCAEESAFLFREMFRSG---VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +       ++  LF+ M   G   + P   +IAS L  CA + +L+ G++ H  +L ++ 
Sbjct: 314 FVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHA-LLAKSG 370

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            +  L   NSL+ MYA++G + +A ++FD M+ +D V+Y++L++GY   G    A  +F+
Sbjct: 371 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFK 430

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M    ++PD  TMV+++ ACSH   +  G+     +  I G+  +      ++D+Y + 
Sbjct: 431 KMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI-IRGLASETSICNALIDMYAKC 489

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           G ++ ++++   MP     + W T++    IH   G+G+ A    LE
Sbjct: 490 GRIDLSRQVFNMMPSRDIVS-WNTMIAGYGIH---GLGKEATALFLE 532



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 163/384 (42%), Gaps = 50/384 (13%)

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +  A  LFD++   D  ++N +I AY+S                        +    A
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSS-----------------------SPTAAA 107

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G          L L  RM       ++      L ACS +     G+ IH  A+     
Sbjct: 108 DG----------LHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQ 157

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA--FLFR 400
               V  AL+ MY +C  L  A  +F     + ++ WN+ML+GY H      +    L  
Sbjct: 158 ADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSM 217

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR---------RAMFNEHLLLWN 451
           +M    + PN  T+ ++LPL A+   L  G   H Y +R         ++   + +LL  
Sbjct: 218 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGT 277

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ--- 508
           +L++MYA+ G +  A+ VFD M  R+EVT+++LI G+ +      A  LF+ M       
Sbjct: 278 ALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 337

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + P   ++ + L AC+    +  G+ Q   + +  G+   L     ++ +Y +AGL+++A
Sbjct: 338 LSP--TSIASALRACASLDHLRMGE-QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 569 KEIITKMPYTPTSAMWATLLGACQ 592
             +  +M    T +  A + G  Q
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQ 418



 Score = 43.1 bits (100), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 13/137 (9%)

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA--LKLFEEMNKNQIKPDHVTMV 517
           SG +  A  +FD +   D  TY  LI  Y        A  L L+  M ++++ P++ T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 518 AVLSACS-----HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
             L ACS     H G      +   R     G+   L     ++D+Y +   L  A  I 
Sbjct: 130 FALKACSALADHHCG------RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 183

Query: 573 TKMPYTPTSAMWATLLG 589
             MP     A  A L G
Sbjct: 184 ATMPARDLVAWNAMLAG 200


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 199/632 (31%), Positives = 332/632 (52%), Gaps = 42/632 (6%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           + N +    L++ +  +     + +  E +  +  + W   IS YV++GF  EA+ ++ +
Sbjct: 115 QTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIK 174

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQ 224
           +    ++ +  T+ SV++AC  + D   G  V+   +   +E  L V N+L+++  + G+
Sbjct: 175 LLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGE 234

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           + +AR +FD+M E+D VSW  ++  Y       EA ++F EM +     N ++W+ +   
Sbjct: 235 IHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQR----NEVSWSAMIAR 290

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGE 343
             ++G  +  L L  RM  QE +  +++     L A + V AL+ G  IHG   +  + +
Sbjct: 291 YCQSGYPEESLRLFCRM-IQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEK 349

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT---------------- 387
              V ++LI MY +C + +    LF    EK++++WN+M+ GY+                
Sbjct: 350 DVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMP 409

Query: 388 -------------HLDCAE--ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
                        HLDC +  E   +F EM   G  PN  T +S+L  CA  A+L  GK 
Sbjct: 410 VRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKN 469

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  I++  +  +   +  +L +MYA+SG +  +K VF+ M +++EV++T++I G    G
Sbjct: 470 LHGKIVKLGIQCD-TYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESG 528

Query: 493 EGRVALKLFEEMNK-NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
               +L LFEEM K + I P+ V  +AVL ACSHSGLV +G   F  M ++YG+ P+  H
Sbjct: 529 LAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRH 588

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           F C+VD+  RAG L +A+E I  MP+ P +  WA LL  C+ ++N  + E  A KL E  
Sbjct: 589 FTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLWEMA 648

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
            +N   YVL++N+YA+ G W  + KVR  M+  G++K  GC+WV+  +    F  +D ++
Sbjct: 649 EKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRDRVHSFYSEDGAH 708

Query: 672 VQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
            Q+ EIY +L  L   MK    V+   FCS +
Sbjct: 709 SQSAEIYEILELLGYEMKCFKEVLA--FCSSK 738



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 194/431 (45%), Gaps = 66/431 (15%)

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
           + L VHN ++S   + G +D AR+LFD+M + + +SW  +IS +   G  +E+   F   
Sbjct: 85  FDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYF--- 141

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
            E     NV++W     G ++ G     ++L  ++   E   + V     + AC+++G  
Sbjct: 142 -ERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDF 200

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            LG  + G  V+  Y     V N+LIT+  R  ++  A  +F    EK +++W ++L  Y
Sbjct: 201 GLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLY 260

Query: 387 THLD---------------------------C----AEESAFLFREMFRSGVEPNYVTIA 415
             +D                           C     EES  LF  M + G +PN    +
Sbjct: 261 VEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFS 320

Query: 416 SILPLCARVANLQHGKEFHCYILR--------------------------RAMFN----E 445
           SIL   A V  LQ G   H ++ +                          R +F+    +
Sbjct: 321 SILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEK 380

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           +++ WN++V  Y+ +G + EAK +F++M  R+ V+++++IAG+    +     ++F EM 
Sbjct: 381 NMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMI 440

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
                P+  T  ++L AC+ +  + +G+    ++  + GI         + D+Y ++G +
Sbjct: 441 LLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKL-GIQCDTYVGTALTDMYAKSGDI 499

Query: 566 NKAKEIITKMP 576
             +K++  +MP
Sbjct: 500 ESSKKVFNRMP 510



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 147/385 (38%), Gaps = 74/385 (19%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+ I+     V+AL  G  +H     +G EK+  +   L+  Y       +  FL +   
Sbjct: 319 FSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTIL 378

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-------IRG---------------- 173
            +  + WN ++  Y  +G   EA  ++  M  R        I G                
Sbjct: 379 EKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNE 438

Query: 174 --------DNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQ 224
                   +  T+ S+L AC     +D G+ +H  I     +   +V  AL  MY K G 
Sbjct: 439 MILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGD 498

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           ++ ++++F++M +++ VSW  MI   A  GL +E+  LF EM+                 
Sbjct: 499 IESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEME----------------- 541

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                            +T     + V  +  L ACSH G +  G   + +++   YG  
Sbjct: 542 -----------------KTSSIAPNEVMFLAVLFACSHSGLVDKGL-WYFNSMEAVYGLK 583

Query: 345 ENVRN--ALITMYSRCKDLRHA-YILFKMTAEKSIITWNSMLSG---YTHLDCAEESAFL 398
              R+   ++ M SR   L  A   ++ M  +     W ++LSG   Y + + AE  A  
Sbjct: 584 PKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGK 643

Query: 399 FREMFRSGVEPNYVTIASILPLCAR 423
             EM        YV +++I     R
Sbjct: 644 LWEMAEKNC-AGYVLLSNIYASAGR 667



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 30/202 (14%)

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           C   AN+Q G       L   M   + + W +L+  + + G+V E+   F+    ++ V+
Sbjct: 92  CMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVS 151

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH----------SGLVV 530
           +T+ I+GY   G    A+KLF ++ ++++KP+ VT  +V+ AC++           GL+V
Sbjct: 152 WTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIV 211

Query: 531 EGQKQFE------------RMTSIY---GIFPQLEH-----FACMVDLYGRAGLLNKAKE 570
           +   + +            RM  I+    +F ++E      +  ++DLY     L +A+ 
Sbjct: 212 KTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARR 271

Query: 571 IITKMPYTPTSAMWATLLGACQ 592
           I  +MP     +  A +   CQ
Sbjct: 272 IFDEMPQRNEVSWSAMIARYCQ 293


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 214/685 (31%), Positives = 340/685 (49%), Gaps = 80/685 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G+ ++A   + R+ +     D V  +F  ++  C    +LAQG+++H      GL+
Sbjct: 85  YAQNGHSTEALVLYWRMNLQGLGTDHV--TFVSVLGAC---SSLAQGREIHNRVFYSGLD 139

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               L   LVT YA F    +A  + ++   R    WN +I  + + G ++ AL ++K+M
Sbjct: 140 SFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQV 225
           +   ++ ++ TY +V+        +  GR +H+ I A   +  L V  AL++MYGK G  
Sbjct: 200 KC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSS 258

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR +FDKM +RD VSWN MI  Y   G + EA +L+ ++  EG               
Sbjct: 259 HEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEG--------------- 303

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV-RGCYGEY 344
                FK         RT+ T+      V  LGACS V AL  G+ +H   + RG   E 
Sbjct: 304 -----FK---------RTKATF------VSILGACSSVKALAQGRLVHSHILERGLDSEV 343

Query: 345 ENVRNALITMYSRC----------------------------------KDLRHAYILFKM 370
             V  AL+ MY++C                                  KD R A  +F  
Sbjct: 344 A-VATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQH 429
              +  I WN+M++ Y    CA  +  +FREM   +G++P+ VT  ++L  CA +  L  
Sbjct: 403 LGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
            K  H  I   +    ++++ N+L+ MYAR G + EA+ +F     +  V++T+++A + 
Sbjct: 463 VKALHAQI-SESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFS 521

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G    AL LF+EM+   +KPD VT  ++L  C+H G + +G + F  M  ++G+ P  
Sbjct: 522 QYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTA 581

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           +HFA MVDL GR+G L  AKE++  MP+ P    W T L AC+IH    +GE AAE++ E
Sbjct: 582 DHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYE 641

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             P ++  Y+ ++N+YAA G W+K+A VR  M + G++K+PG ++++       F     
Sbjct: 642 LDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGK 701

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYV 694
            + +  EI   L  L  LM+ AGYV
Sbjct: 702 YHPRTDEICEELTRLHGLMRAAGYV 726



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/554 (25%), Positives = 239/554 (43%), Gaps = 82/554 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C     +A+G+ LH        E++ ++   L++ Y       +A  + E+ 
Sbjct: 9   TFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM 68

Query: 136 NIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD- 192
           + R    + WN +I+ Y ++G   EAL +Y +M  + +  D+ T+ SVL AC  +     
Sbjct: 69  DWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGRE 128

Query: 193 -FGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
              RV +S +D+       + NALV+MY +FG V  A+R+F  +  RD  SWN +I A++
Sbjct: 129 IHNRVFYSGLDSFQS----LANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G W  A ++F EM+                 C    N    + ++S   T E      
Sbjct: 185 QSGDWSGALRIFKEMK-----------------CDMKPNSTTYINVISGFSTPEV----- 222

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                         L  G++IH   V   +     V  ALI MY +C     A  +F   
Sbjct: 223 --------------LPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKM 268

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            ++ +++WN M+  Y       E+  L++++   G +    T  SIL  C+ V  L  G+
Sbjct: 269 KKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR 328

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
             H +IL R + +E + +  +LV MYA+ G + EA+ VF+ M  RD V +++LI  Y   
Sbjct: 329 LVHSHILERGLDSE-VAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASN 387

Query: 492 GEGR----------------------------------VALKLFEEMNKNQ-IKPDHVTM 516
           G G+                                   A+K+F EM     +KPD VT 
Sbjct: 388 GYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTF 447

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           +AVL AC+  G + E  K      S   +   +     ++++Y R G L +A+ +     
Sbjct: 448 IAVLEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK 506

Query: 577 YTPTSAMWATLLGA 590
              T   W  ++ A
Sbjct: 507 -EKTVVSWTAMVAA 519



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 196/418 (46%), Gaps = 41/418 (9%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLF 232
           DN T+ +VL +C    DV  GR +H  I     E    V NAL+SMYGK   +  AR +F
Sbjct: 6   DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           + M                    W++               NV++WN +     + G+  
Sbjct: 66  ESMD-------------------WRQR--------------NVVSWNAMIAAYAQNGHST 92

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
             L L  RM  Q    D V  V  LGACS   +L  G+EIH          ++++ NAL+
Sbjct: 93  EALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALV 149

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
           TMY+R   +  A  +F+    +   +WN+++  ++       +  +F+EM +  ++PN  
Sbjct: 150 TMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNST 208

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T  +++   +    L  G++ H  I+    F+  L++  +L+ MY + G   EA+ VFD 
Sbjct: 209 TYINVISGFSTPEVLPEGRKIHAEIVANG-FDSDLVVATALINMYGKCGSSHEAREVFDK 267

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M +RD V++  +I  Y   G+   AL+L+++++    K    T V++L ACS    + +G
Sbjct: 268 MKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG 327

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +     +    G+  ++     +V++Y + G L +A+++   M      A W+TL+GA
Sbjct: 328 RLVHSHILE-RGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVA-WSTLIGA 383


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 196/617 (31%), Positives = 316/617 (51%), Gaps = 42/617 (6%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           +K+L Q KQ H   + LGL ++  L+  L+     F+    A  +   +       +N L
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD-VDFGRVVHS-CIDAC 204
           I   V +  + +A+ VY  M+      DNFT+P VLKAC  +      G  +HS  I   
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTG 132

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            +W +FV   LV +Y K G +  AR++FD++                             
Sbjct: 133 FDWDVFVKTGLVCLYSKNGFLTDARKVFDEI----------------------------- 163

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
                  E NV++W  I  G + +G F   L L   +       DS   V  L ACS VG
Sbjct: 164 ------PEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVG 217

Query: 325 ALKLGKEIHGSAVRGCYGEYENV--RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            L  G+ I G       G   NV    +L+ MY++C  +  A  +F    EK ++ W+++
Sbjct: 218 DLASGRWIDGYMRES--GSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSAL 275

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           + GY      +E+  +F EM R  V P+   +  +   C+R+  L+ G  +   ++    
Sbjct: 276 IQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGN-WARGLMDGDE 334

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F  + +L  +L++ YA+ G V +AK VF  M R+D V + ++I+G  + G    A  +F 
Sbjct: 335 FLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFG 394

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M K  ++PD  T V +L  C+H+GLV +G + F  M+S++ + P +EH+ CMVDL  RA
Sbjct: 395 QMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARA 454

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           GLL +A+++I  MP    S +W  LLG C++H++T + E   ++L+E  P NSG+YVL++
Sbjct: 455 GLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLS 514

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+Y+A+  WD+  K+R+ +   G++K+PGC+WV+   V   FLV DTS+  + +IY  L 
Sbjct: 515 NIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLE 574

Query: 683 GLTELMKDAGYVVKEEF 699
            L + +++AGY    EF
Sbjct: 575 SLFKDLREAGYNPTTEF 591



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 213/485 (43%), Gaps = 46/485 (9%)

Query: 50  RGNLSK-AFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQ-GKQLHACAIALGL 105
           RG +S  AF     +  +   H    D  +F  ++  C ++      G  LH+  I  G 
Sbjct: 74  RGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGF 133

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           + +  +   LV  Y+      +A  + +    +  + W  +I  Y+  G + EAL +++ 
Sbjct: 134 DWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRG 193

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQ 224
           +    +R D+FT   +L AC  + D+  GR +   + ++    ++FV  +LV MY K G 
Sbjct: 194 LLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGS 253

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           ++ ARR+FD M+E+D V W+ +I  YAS G+ KEA  +F EMQ E V             
Sbjct: 254 MEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRP----------- 302

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                   D  A V    ACS +GAL+LG    G      +   
Sbjct: 303 ------------------------DCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSN 338

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             +  ALI  Y++C  +  A  +FK    K  + +N+++SG         +  +F +M +
Sbjct: 339 PVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVK 398

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G++P+  T   +L  C     +  G  +   +         +  +  +V++ AR+G + 
Sbjct: 399 VGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLV 458

Query: 465 EAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP---DHVTMVAVL 520
           EA+ +   M    + + + +L+ G  +  + ++A  + +++   +++P    H  +++ +
Sbjct: 459 EAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQL--IELEPWNSGHYVLLSNI 516

Query: 521 SACSH 525
            + SH
Sbjct: 517 YSASH 521


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 198/629 (31%), Positives = 334/629 (53%), Gaps = 46/629 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE--KNPVLVPKLVTFYASFSLYNNACFLVE 133
           SF ++       +++ +    +   + LG E  K+  +V   ++ YA      ++  + +
Sbjct: 216 SFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFD 275

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVY-KQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +   R    WN +I +YV++    E++ ++ + + S+ I  D  TY     A   +  V+
Sbjct: 276 SCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVE 335

Query: 193 FGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            GR  H  +     E  + + N+L+ MY + G V  +  +F  M ERD VSWNTMISA+ 
Sbjct: 336 LGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFV 395

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             GL  E   L  EMQ++G +++ IT                V  LLS            
Sbjct: 396 QNGLDDEGLMLVYEMQKQGFKIDYIT----------------VTALLS------------ 427

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                  A S++   ++GK+ H   +R    ++E + + LI MYS+   +R +  LF+ +
Sbjct: 428 -------AASNLRNKEIGKQTHAFLIRQGI-QFEGMNSYLIDMYSKSGLIRISQKLFEGS 479

Query: 372 --AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
             AE+   TWNSM+SGYT     E++  +FR+M    + PN VT+ASILP C+++ ++  
Sbjct: 480 GYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDL 539

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK+ H + +R+ + ++++ + ++LV+MY+++G +  A+ +F     R+ VTYT++I GYG
Sbjct: 540 GKQLHGFSIRQYL-DQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYG 598

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G  A+ LF  M ++ IKPD +T VAVLSACS+SGL+ EG K FE M  +Y I P  
Sbjct: 599 QHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSS 658

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKL- 607
           EH+ C+ D+ GR G +N+A E +  +      A +W +LLG+C++H    + E  +E+L 
Sbjct: 659 EHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLA 718

Query: 608 -LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
             +     SGY VL++NMYA    W  + KVR  MR+ G++K  G + ++     + F+ 
Sbjct: 719 KFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVS 778

Query: 667 DDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
            D  +  + EIY ++ GL + M+   ++ 
Sbjct: 779 RDQEHPHSSEIYDVIDGLAKDMRGDSFLT 807



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 142/601 (23%), Positives = 278/601 (46%), Gaps = 58/601 (9%)

Query: 60  FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
           ++R++ TA   +    +++  +  C + K L  GK +H   I      + V+   L+  Y
Sbjct: 93  YSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMY 152

Query: 120 ASFSLYNNACF-------LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
            S  L    CF       + +N   +  + WN LIS YV+ G  AEA   +  M    ++
Sbjct: 153 VS-CLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVK 211

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEW--SLFVHNALVSMYGKFGQVDVAR 229
               ++ +V  A      +    V +   +    E+   LFV ++ +SMY + G ++ +R
Sbjct: 212 PSPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSR 271

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+FD  +ER+   WNTMI  Y       E+ +LF+E                        
Sbjct: 272 RVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEA----------------------- 308

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                      + ++E   D V  ++   A S +  ++LG++ HG   +        + N
Sbjct: 309 -----------IGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVN 357

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           +L+ MYSRC  +  ++ +F    E+ +++WN+M+S +      +E   L  EM + G + 
Sbjct: 358 SLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKI 417

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           +Y+T+ ++L   + + N + GK+ H +++R+ +  E +  +  L++MY++SG +  ++ +
Sbjct: 418 DYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSY--LIDMYSKSGLIRISQKL 475

Query: 470 FD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           F+    + RD+ T+ S+I+GY   G       +F +M +  I+P+ VT+ ++L ACS  G
Sbjct: 476 FEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIG 535

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            V  G KQ    +    +   +   + +VD+Y +AG +  A+++ ++     +      +
Sbjct: 536 SVDLG-KQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMI 594

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPE----NSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           LG  Q     G+GE A    L  +      ++  +V + +  + +G  D+  K+   MR+
Sbjct: 595 LGYGQ----HGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMRE 650

Query: 644 L 644
           +
Sbjct: 651 V 651



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 225/504 (44%), Gaps = 91/504 (18%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRR--IRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           WN +I  ++ +    EAL  Y +M+        D +TY S LKAC E  ++  G+ VH  
Sbjct: 73  WNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCH 132

Query: 201 IDAC-HEWSLFVHNALVSMY------GKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           +  C    S  VHN+L++MY          + DV R++FD M  ++ V+WNT+IS Y   
Sbjct: 133 LIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKT 192

Query: 254 GLWKEAFQLFVEMQEEGVE------VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           G   EA + F  M    V+      VNV    +I+    +   F G++            
Sbjct: 193 GRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLM------------ 240

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
                             LKLG E     V+  +     V ++ I+MY+   D+  +  +
Sbjct: 241 ------------------LKLGDEY----VKDLF-----VVSSAISMYAELGDIESSRRV 273

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS----GVEPNYVTIASILPLCAR 423
           F    E++I  WN+M+  Y   DC  ES  LF E   S      E  Y+  AS +    +
Sbjct: 274 FDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQ 333

Query: 424 VANLQHGKEFHCYILRRAMFNE-HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
           V   + G++FH ++ +   F E  +++ NSL+ MY+R G V ++  VF  M  RD V++ 
Sbjct: 334 V---ELGRQFHGFVSKN--FRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWN 388

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS-----------HSGLVVE 531
           ++I+ +   G     L L  EM K   K D++T+ A+LSA S           H+ L+ +
Sbjct: 389 TMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQ 448

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP-TSAMWATLLGA 590
           G  QFE M S             ++D+Y ++GL+  ++++     Y     A W +++  
Sbjct: 449 G-IQFEGMNSY------------LIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISG 495

Query: 591 CQIHRNTGIGEWAAEKLLET--RP 612
              + +T        K+LE   RP
Sbjct: 496 YTQNGHTEKTFLVFRKMLEQNIRP 519


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 207/642 (32%), Positives = 336/642 (52%), Gaps = 34/642 (5%)

Query: 65  ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI--ALGLEKNPVLVPKLVTFYASF 122
           I + + + +L+  +   FC    K+L   KQLHA  +   +  + N  L    V+  +  
Sbjct: 7   IASTAANTILEKLS---FC----KSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSIN 59

Query: 123 SLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE----ALCVYKQMQSRRIRGDNFTY 178
             Y    F    S+I  P P +++ + ++RD   +      +  Y++++    R D F++
Sbjct: 60  LSYALNVF----SSIPSP-PESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSF 114

Query: 179 PSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
             +LKA  ++  +  G  +H            FV    + MY   G+++ AR +FD+M  
Sbjct: 115 LPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSH 174

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK---GV 294
           RD V+WNTMI  Y   GL  EAF+LF EM++  V  + +    I   C RTGN +    +
Sbjct: 175 RDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAI 234

Query: 295 LELLSRMRTQ-ETYLDSVATVIGLGACSHVGALKLGKEI-HGSAVRGCYGEYENVRNALI 352
            E L     + +T+L +    +  GA    G + + +E     +VR  +     V  A++
Sbjct: 235 YEFLIENDVRMDTHLLTALVTMYAGA----GCMDMAREFFRKMSVRNLF-----VSTAMV 285

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
           + YS+C  L  A ++F  T +K ++ W +M+S Y   D  +E+  +F EM  SG++P+ V
Sbjct: 286 SGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVV 345

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           ++ S++  CA +  L   K  H  I    + +E L + N+L+ MYA+ G +   + VF+ 
Sbjct: 346 SMFSVISACANLGILDKAKWVHSCIHVNGLESE-LSINNALINMYAKCGGLDATRDVFEK 404

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M RR+ V+++S+I    + GE   AL LF  M +  ++P+ VT V VL  CSHSGLV EG
Sbjct: 405 MPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           +K F  MT  Y I P+LEH+ CMVDL+GRA LL +A E+I  MP      +W +L+ AC+
Sbjct: 465 KKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACR 524

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           IH    +G++AA+++LE  P++ G  VL++N+YA    W+ +  +R  M +  V K  G 
Sbjct: 525 IHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGL 584

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           + +D       FL+ D  + Q+ EIY  L  +   +K AGYV
Sbjct: 585 SRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYV 626


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/550 (32%), Positives = 297/550 (54%), Gaps = 50/550 (9%)

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN-- 213
           Y   L +Y QM++  I  +NFT+P V  AC  + ++   R+ H     C  + L + N  
Sbjct: 98  YPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAH-----CEVFKLGLDNDH 152

Query: 214 ----ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
               ++V+MY + G+  VAR++FD++ E+D                              
Sbjct: 153 HTVNSMVTMYFRCGENGVARKVFDEITEKD------------------------------ 182

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATVIGLGACSHVGALKL 328
                +++WN++  G  + G  +  +E+  R+R +  +  D ++ V  LGAC  +G L+L
Sbjct: 183 -----LVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLEL 237

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+ + G  V         + +ALI+MYS+C +L  +  +F     +  ITWN+ +S Y  
Sbjct: 238 GRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQ 297

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
              A+E+  LF  M  +GV+PN VT+ ++L  CA +  L  GK+   Y   R + ++ + 
Sbjct: 298 NGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHD-IF 356

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN- 507
           +  +L++MYA+ G +  A+ VF+ M R+++ ++ ++I+     G+ + AL LFE M+   
Sbjct: 357 VATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEG 416

Query: 508 -QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
              +P+ +T V++LSAC H+GLV EG + F+ M++++G+ P++EH++CMVDL  RAG L 
Sbjct: 417 GSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLY 476

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A ++I KMP  P +     L  ACQ  +N  IGE   + LLE  P NSG Y++ + +Y 
Sbjct: 477 EAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYE 536

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
               WD  A++R  MR+ GV K PGC+W++ GN    FL  D   + + ++  ++  L E
Sbjct: 537 NLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYE 596

Query: 687 LMKDAGYVVK 696
            +K  GYV K
Sbjct: 597 ELKKEGYVPK 606



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 191/419 (45%), Gaps = 50/419 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +   C  ++ +   +  H     LGL+ +   V  +VT Y        A  + +  
Sbjct: 119 TFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEI 178

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG 194
             +  + WN L+S Y + GF  EA+ V+ +++       D  +  SVL ACGE+ D++ G
Sbjct: 179 TEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELG 238

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R V    ++   + + ++ +AL+SMY K G++  +RR+FD M  RD ++WN  ISAYA  
Sbjct: 239 RWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQN 298

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G+  EA  LF  M+E GV+ N +T   +                                
Sbjct: 299 GMADEAISLFHSMKENGVDPNKVTLTAV-------------------------------- 326

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC+ +GAL LGK++   A          V  ALI MY++C  L  A  +F     
Sbjct: 327 ---LSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPR 383

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGK 431
           K+  +WN+M+S       A+E+  LF  M   G    PN +T  S+L  C     +  G 
Sbjct: 384 KNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEG- 442

Query: 432 EFHCYILRRAMFN-----EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSL 484
            +  + +   +F      EH   ++ +V++ +R+G + EA  V + M  + D VT  +L
Sbjct: 443 -YRLFDMMSTLFGLVPKIEH---YSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGAL 497


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 318/590 (53%), Gaps = 43/590 (7%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+   +DG   EA  ++ +M+      D  T+ +V+    +   ++  R +   +DA
Sbjct: 56  NWMITNLSKDGRIMEARRLFDEMRE----PDVITWTTVISGYIKCGMIEEARRLFDRVDA 111

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
               ++    A+V  Y +  ++  A +LF++M  ++ VSWNTMI  YA  G    A  LF
Sbjct: 112 KK--NVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLF 169

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            +M E     NV++WNT+     + G  +    L  RM  ++  +   A + GL     +
Sbjct: 170 EKMPER----NVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV-ISWTAMIAGLSKNGRI 224

Query: 324 GALKL-------GKEIHGSAVRGCYGEYENVR-------------------NALITMYSR 357
              +L          +  +A+   Y +  N+R                   N +IT   +
Sbjct: 225 DEARLLFDRMPERNVVSWNAMITGYAQ--NLRLDEALDLFERMPERDLPSWNTMITGLIQ 282

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIAS 416
             DLR A  LF    +K++I+W +M++G      +EE+  +F  M  + G +PN  T  S
Sbjct: 283 NGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVS 342

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD--LMS 474
           +L  C+ +A L  G++ H  I+ + ++ +   + ++L+ MY++ G++  A+ +FD  + S
Sbjct: 343 VLGACSNLAGLGEGQQVH-QIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTS 401

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           +RD V++  +IA Y   G G+ A+  F+EM K+  KPD VT V +LSACSH+GLV EG K
Sbjct: 402 QRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLK 461

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            F+ +     I  + +H+AC+VDL GRAG L +A   I ++   P++ +W  LL  C +H
Sbjct: 462 YFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVH 521

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            N  IG+ AA+KLLE  PEN+G Y+L++N+YA+TG W + A+VR  M+D G++K PGC+W
Sbjct: 522 ANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSW 581

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
           ++ GN    F+V D S+ Q++ IY LL  L   MK AGY    +F S+E+
Sbjct: 582 IEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMKKAGYEPNNDFISDED 631



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 218/426 (51%), Gaps = 31/426 (7%)

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN V    ++  YA     ++A +L E    R  + WN ++S+  + G   EA  ++ +M
Sbjct: 144 KNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM 203

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
             R    D  ++ +++    +   +D  R++    D   E ++   NA+++ Y +  ++D
Sbjct: 204 PER----DVISWTAMIAGLSKNGRIDEARLL---FDRMPERNVVSWNAMITGYAQNLRLD 256

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A  LF++M ERD  SWNTMI+     G  + A +LF EM ++    NVI+W T+  GC+
Sbjct: 257 EALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKK----NVISWTTMITGCV 312

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYE 345
           + G  +  L++ SRM +      +  T +  LGACS++  L  G+++H    +  Y +  
Sbjct: 313 QEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDST 372

Query: 346 NVRNALITMYSRCKDLRHAYILFK--MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
            V +ALI MYS+C +L  A  +F   MT+++ +++WN +++ Y H    +E+   F+EM 
Sbjct: 373 FVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMR 432

Query: 404 RSGVEPNYVTIASILPLCARVANLQHG-KEFHCYILRRAMF--NEHLLLWNSLVEMYARS 460
           +SG +P+ VT   +L  C+    ++ G K F   +  R++    +H   +  LV++  R+
Sbjct: 433 KSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDH---YACLVDLCGRA 489

Query: 461 GKVPEAKSVFD-LMSRRDEVTYTSLIAGYGIQGEGRV----ALKLFEEMNKNQIKPDHVT 515
           G++ EA    + L ++     + +L+AG  +    ++    A KL E      ++P++  
Sbjct: 490 GRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLE------VEPENAG 543

Query: 516 MVAVLS 521
              +LS
Sbjct: 544 TYLLLS 549



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 196/436 (44%), Gaps = 56/436 (12%)

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           +  ++ + R+ F   ++ +    N MI+  +  G   EA +LF EM+E     +VITW T
Sbjct: 35  RTAKISIPRKDF--TVDGNVARCNWMITNLSKDGRIMEARRLFDEMREP----DVITWTT 88

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG-ALKLGKEIHGSAVRG 339
           +  G ++ G  +    L  R+  ++  +   A V G    + +  A KL  E+    V  
Sbjct: 89  VISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVS 148

Query: 340 ----CYGEYENVR-------------------NALITMYSRCKDLRHAYILFKMTAEKSI 376
                 G  +N R                   N +++M ++C  +  A  LF    E+ +
Sbjct: 149 WNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV 208

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           I+W +M++G +     +E+  LF  M     E N V+  +++   A+   L    +    
Sbjct: 209 ISWTAMIAGLSKNGRIDEARLLFDRM----PERNVVSWNAMITGYAQNLRLDEALD---- 260

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            L   M    L  WN+++    ++G +  A+ +F+ M +++ +++T++I G   +GE   
Sbjct: 261 -LFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEE 319

Query: 497 ALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT-SIYGIFPQLEHF-- 552
           ALK+F  M + N  KP+  T V+VL ACS+   + EGQ+  + ++ ++Y    Q   F  
Sbjct: 320 ALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVY----QDSTFVV 375

Query: 553 ACMVDLYGRAGLLNKAKEIITK-MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + ++++Y + G L  A+++    M        W  ++ A   H   G G+ A     E R
Sbjct: 376 SALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHH---GYGKEAINFFKEMR 432

Query: 612 -----PENSGYYVLIA 622
                P++  Y  L++
Sbjct: 433 KSGFKPDDVTYVGLLS 448


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 197/643 (30%), Positives = 326/643 (50%), Gaps = 41/643 (6%)

Query: 57  FEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
           FE    + IT   H     + + ++ C   +     G   H   + LG      +   L+
Sbjct: 398 FEQMHELGITPDEH-----ALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALI 452

Query: 117 TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
           +FYA  ++ +NA  + +    +  + WN +IS    +G  +EA+ ++ +M  +    D+ 
Sbjct: 453 SFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDST 512

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           T  SVL AC        GRVVH        +S+          G  G+  +A        
Sbjct: 513 TLLSVLPACARSHYWFVGRVVHG-------YSVKT--------GLIGETSLA-------- 549

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
                  N ++  Y++   W    Q+F  M ++    NV++W  +     R G F  V  
Sbjct: 550 -------NALLDMYSNCSDWHSTNQIFRNMAQK----NVVSWTAMITSYTRAGLFDKVAG 598

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
           LL  M       D  A    L   +   +LK GK +HG A+R    +   V NAL+ MY 
Sbjct: 599 LLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYV 658

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
            C+++  A ++F     K II+WN+++ GY+  + A ES  LF +M     +PN VT+  
Sbjct: 659 NCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTC 717

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           ILP  A +++L+ G+E H Y LRR  F E     N+LV+MY + G +  A+ +FD ++++
Sbjct: 718 ILPAVASISSLERGREIHAYALRRG-FLEDSYTSNALVDMYVKCGALLVARVLFDRLTKK 776

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           + +++T +IAGYG+ G G+ A+ LFE+M  + ++PD  +  A+L AC HSGL  EG K F
Sbjct: 777 NLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFF 836

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
             M   Y I P+L+H+ C+VDL    G L +A E I  MP  P S++W +LL  C+IHR+
Sbjct: 837 NAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRD 896

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             + E  A+++ +  PEN+GYYVL+AN+YA    W+ + K++  +   G+R+  GC+W++
Sbjct: 897 VKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIE 956

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
                  F+ D+ ++ +   I   L  +   M++ G+  K+++
Sbjct: 957 VRGKVHVFIADNRNHPEWNRIAEFLDHVARRMREEGHDPKKKY 999



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 230/504 (45%), Gaps = 65/504 (12%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA-LGLEKNPVL 111
           L +A +    +R+  +   V + S+  ++  CG+ ++L   ++ HA   A  G     VL
Sbjct: 73  LCQAGDLAAALRLLGSDGGVGVRSYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVL 132

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSR 169
             +LV  Y        A  + +    R      W  L+S Y + G + E + +++QMQ  
Sbjct: 133 GKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCC 192

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI------DACHEWSLFVHNALVSMYGKFG 223
            +  D      VLK    +  +  G V+H  +      +AC      V NAL+++Y + G
Sbjct: 193 GVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEAC-----AVANALIALYSRCG 247

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            ++ A ++FD M  RDA+SWN+ IS Y S G    A  LF +M  EG E++ +T      
Sbjct: 248 CMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVT------ 301

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYG 342
                     VL +L                    AC+ +G   +GK +HG +++ G   
Sbjct: 302 ----------VLSVLP-------------------ACAELGFELVGKVVHGYSMKSGLLW 332

Query: 343 EYENVRNA--------LITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLDCAE 393
           + E+V++         L+ MY +C D+  A  +F  M ++ ++  WN ++ GY      E
Sbjct: 333 DLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFE 392

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           ES  LF +M   G+ P+   ++ +L     ++  + G   H Y+++   F     + N+L
Sbjct: 393 ESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLG-FGTQCAVCNAL 451

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           +  YA+S  +  A  VFD M  +D +++ S+I+G    G    A++LF  M     + D 
Sbjct: 452 ISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDS 511

Query: 514 VTMVAVLSACSHS-----GLVVEG 532
            T+++VL AC+ S     G VV G
Sbjct: 512 TTLLSVLPACARSHYWFVGRVVHG 535



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/511 (24%), Positives = 220/511 (43%), Gaps = 54/511 (10%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G+  +    F +++    S D    + + ++ C   + ++ +G+ +H     L
Sbjct: 170 MSAYAKAGDFQEGVSLFRQMQCCGVSPDA--HAVSCVLKCIASLGSITEGEVIHGLLEKL 227

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL +   +   L+  Y+      +A  + ++ + R  + WN  IS Y  +G++  A+ ++
Sbjct: 228 GLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLF 287

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSL---------FVHN 213
            +M S      + T  SVL AC E+     G+VVH   + +   W L          + +
Sbjct: 288 SKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGS 347

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
            LV MY K G +  ARR+FD M                SKG                   
Sbjct: 348 KLVFMYVKCGDMGSARRVFDAM---------------PSKG------------------- 373

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           NV  WN I GG  +   F+  L L  +M       D  A    L   + +   + G   H
Sbjct: 374 NVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAH 433

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G  V+  +G    V NALI+ Y++   + +A ++F     +  I+WNS++SG T      
Sbjct: 434 GYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNS 493

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LF  M+  G E +  T+ S+LP CAR      G+  H Y ++  +  E  L  N+L
Sbjct: 494 EAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLA-NAL 552

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MY+          +F  M++++ V++T++I  Y   G       L +EM  + IKPD 
Sbjct: 553 LDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDV 612

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
             + +VL           G +  ++  S++G
Sbjct: 613 FAVTSVLHG-------FAGDESLKQGKSVHG 636



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 188/439 (42%), Gaps = 72/439 (16%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL--FVHNALVSMYGKFGQVDVARRLFDK 234
           +Y +V++ CGE   ++  R  H+ + A     +   +   LV  Y K G +  AR +FD+
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDE 155

Query: 235 MLER--DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           M  R  D   W +++SAYA                                   + G+F+
Sbjct: 156 MPPRVADVRVWTSLMSAYA-----------------------------------KAGDFQ 180

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
             + L  +M+      D+ A    L   + +G++  G+ IHG   +   GE   V NALI
Sbjct: 181 EGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALI 240

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            +YSRC  +  A  +F     +  I+WNS +SGY      + +  LF +M+  G E + V
Sbjct: 241 ALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSV 300

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN--------------SLVEMYA 458
           T+ S+LP CA +     GK  H Y ++        LLW+               LV MY 
Sbjct: 301 TVLSVLPACAELGFELVGKVVHGYSMKSG------LLWDLESVQSGIDEALGSKLVFMYV 354

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLI-AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           + G +  A+ VFD M  +  V   +LI  GY    E   +L LFE+M++  I PD   + 
Sbjct: 355 KCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALS 414

Query: 518 AVLS-----ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            +L      +C+  GLV  G           G   Q      ++  Y ++ +++ A  + 
Sbjct: 415 CLLKCITCLSCARDGLVAHG------YLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVF 468

Query: 573 TKMPYTPTSAMWATLLGAC 591
            +MP+  T + W +++  C
Sbjct: 469 DRMPHQDTIS-WNSVISGC 486


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 194/575 (33%), Positives = 303/575 (52%), Gaps = 23/575 (4%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFS---LYNNACFLVENSNIRYPLP--WNLLIS 148
           K+LHA  I  GL      + K++  YA      ++ +  F      I  P    WN+LI 
Sbjct: 5   KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVF----DQIEAPTTFLWNILIR 60

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS 208
              +    A+A+  YK+ Q   +  DN T+P +LKAC  +  ++ G  +H+ I      S
Sbjct: 61  GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 120

Query: 209 -LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            +FV N+L+ +Y   G +  AR +FD+M+ +D VSWN++I  Y+    +K+   LF  MQ
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG--- 324
            EGV+ + +T   +   C R G++     ++   R  E Y   V   +G     + G   
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMV---RYIEDYCIEVDVYLGNTLVDYFGRRG 237

Query: 325 ALKLGKEIH-GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
            L+  +++     VR          NA+I  Y++ +D+  A  +F    +K +I+W+SM+
Sbjct: 238 QLQSAEKVFFNMKVRNIV-----TMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMI 292

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           SGY+  +   ++  +FR+M R+ V+P+ + IAS++  CA +  L  GK  H Y+ RR   
Sbjct: 293 SGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYV-RRNNI 351

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
               ++ NSL++MY + G   EA  VF  M  +D +++ S+I G    G  + +L LF+ 
Sbjct: 352 KADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQA 411

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M     +P+ VT + VL AC+++ LV EG   FE M  +Y + PQ++H+ C+VDL GRAG
Sbjct: 412 MLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAG 471

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
            L KA   IT+MP  P   +W  LLG+C  H +  I E   +KL E  P NSG Y L++N
Sbjct: 472 QLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSN 531

Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
            YA+   W +   VR CM D  VRK PGC+ V+A 
Sbjct: 532 AYASAHRWSEAMNVRQCMADTDVRKSPGCSAVEAA 566



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 222/451 (49%), Gaps = 14/451 (3%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF---LV 132
           +F  I+  C ++ AL +G+Q+H     LGL  +  +   L+  YA+     N C+   + 
Sbjct: 89  TFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACG---NLCYARSVF 145

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +   ++  + WN LI  Y +   + + L ++K MQ+  ++ D  T   V+ AC  + D  
Sbjct: 146 DEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYS 205

Query: 193 FGR-VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
               +V    D C E  +++ N LV  +G+ GQ+  A ++F  M  R+ V+ N MI+AYA
Sbjct: 206 MADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYA 265

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                  A ++F ++ ++    ++I+W+++  G  +  +F   LE+  +M+  +   D++
Sbjct: 266 KGQDIVSARKIFDQIPKK----DLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAI 321

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                + +C+H+GAL LGK +H    R        + N+LI MY +C   + A  +FK  
Sbjct: 322 VIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEM 381

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            EK  ++WNS++ G  +    +ES  LF+ M   G  PN VT   +L  CA    ++ G 
Sbjct: 382 KEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGL 441

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYGI 490
           +    + R       +  +  +V++  R+G++ +A + + ++    D V +  L+     
Sbjct: 442 DHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNT 501

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            G+  +A  + +++  N+++P +     +LS
Sbjct: 502 HGDVAIAEIVTKKL--NELEPSNSGNYTLLS 530


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 292/562 (51%), Gaps = 41/562 (7%)

Query: 138 RYPLP---WNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDF 193
           R PL    +N+L+   +  G   +AL ++ +M     +  D  T    LK+C  M  +D 
Sbjct: 78  RPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDV 137

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR + +  +        FV ++L+ MY     V  A+ LFD +                 
Sbjct: 138 GRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAV----------------- 180

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                         +E GV    + WN I    ++ GN+  V+E+   M       D + 
Sbjct: 181 --------------EENGV----VMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEIT 222

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            V  + AC  +G  KLGK +             N+  ALI MY++C +L  A  LF    
Sbjct: 223 LVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQ 282

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            + ++ W++M+SGYT  D   E+  LF EM  + VEPN VT+ S+L  CA +  L+ GK 
Sbjct: 283 SRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKW 342

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H YI RR   +  ++L  +LV+ YA+ G + +A   F+ M  ++  T+T+LI G    G
Sbjct: 343 VHSYI-RRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNG 401

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            GR AL+LF  M K  I+P  VT + VL ACSHS LV EG++ F+ MT  YGI P+ EH+
Sbjct: 402 RGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHY 461

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            C+VDL GRAGL+++A + I  MP  P + +W  LL +C +H+N  IGE A ++++   P
Sbjct: 462 GCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNP 521

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            +SG Y+L++N+YA+ G W   A +R  M+D G+ K PGC+ ++   V   F  +D+ + 
Sbjct: 522 SHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHP 581

Query: 673 QAQEIYPLLGGLTELMKDAGYV 694
           Q +EIY  +  + + +K AGY+
Sbjct: 582 QLKEIYQKVEEMIDRIKMAGYI 603



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 187/442 (42%), Gaps = 50/442 (11%)

Query: 79  HIIFC----CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           H + C    C ++  L  G+ + A A+  GL  +  ++  L+  YAS      A  L + 
Sbjct: 120 HTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDA 179

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
                 + WN +I+ Y+++G + E + ++K M    +  D  T  SV+ ACG + D   G
Sbjct: 180 VEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG 239

Query: 195 RVVHSCIDACHEWSLF----VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           + V   +D   E  L     +  AL+ MY K G++  ARRLFD M  RD V+W+ MIS Y
Sbjct: 240 KWVAEYVD---EKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGY 296

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                 +EA  LF EMQ   VE N +T  ++                             
Sbjct: 297 TQADQCREALALFSEMQLAEVEPNDVTMVSV----------------------------- 327

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 L AC+ +GAL+ GK +H    R        +  AL+  Y++C  +  A   F+ 
Sbjct: 328 ------LSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFES 381

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              K+  TW +++ G        E+  LF  M ++ +EP  VT   +L  C+    ++ G
Sbjct: 382 MPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEG 441

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYG 489
           +     + +          +  +V++  R+G + EA      M    + V + +L++   
Sbjct: 442 RRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCA 501

Query: 490 IQGE---GRVALKLFEEMNKNQ 508
           +      G  ALK    +N + 
Sbjct: 502 VHKNVEIGEEALKQIVSLNPSH 523



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 118/258 (45%), Gaps = 6/258 (2%)

Query: 361 LRHAYILFKMTAEKSIIT--WNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASI 417
           L +A  LF++     + T  +N ++    H    E++  LF EM   + V P+  T+A  
Sbjct: 66  LPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACA 125

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           L  C+R+  L  G+    Y ++R +  +  +L +SL+ MYA    V  A+ +FD +    
Sbjct: 126 LKSCSRMCTLDVGRGIQAYAVKRGLMADRFVL-SSLIHMYASCRDVAAAQLLFDAVEENG 184

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V + ++I  Y   G     +++F+ M +  +  D +T+V+V++AC   G    G+   E
Sbjct: 185 VVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAE 244

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR-N 596
            +    G+         ++D+Y + G L KA+ +   M      A  A + G  Q  +  
Sbjct: 245 YVDE-KGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCR 303

Query: 597 TGIGEWAAEKLLETRPEN 614
             +  ++  +L E  P +
Sbjct: 304 EALALFSEMQLAEVEPND 321


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 222/735 (30%), Positives = 349/735 (47%), Gaps = 83/735 (11%)

Query: 29  PINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVK 88
           P+ N H  +      L  +   G   +AF  F  ++      D  +  F  +   C  + 
Sbjct: 121 PMRNLHSWK----AILSVYLDHGLFEEAFLLFQVLQFDGVELDFFV--FPLVFKACSGLG 174

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFY----------------------------- 119
           ++  G+QLH   I      N  +   L+  Y                             
Sbjct: 175 SVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVIT 234

Query: 120 ---ASFSLYNNACFLVENSNIRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
              A+  +Y    FL +  ++ Y +P    W+ +I  + ++G+  EA+ +  +MQ   + 
Sbjct: 235 ACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLV 294

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARR 230
            +  T   VL AC  +  +D G+ +H  I   H++  +  V NALV +Y + G +  A +
Sbjct: 295 PNAQTLAGVLPACARLQRLDLGKQLHGYITR-HDFISNPVVVNALVDVYRRCGDMGGAAK 353

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +F K   ++ +S NTMI  Y   G   +A +LF  M   G+E  +I+WN+I  G +R   
Sbjct: 354 IFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFM 413

Query: 291 FKGVLELLSRMRTQETY-LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
           F     +   M  +E    DS      L AC+   +L+ GKEIH  A+         V  
Sbjct: 414 FDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGG 473

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL----------- 398
           AL+ MYS+C+DL  A + F    EK + TWN+++SGYT  +  E   +L           
Sbjct: 474 ALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHP 533

Query: 399 ------------------------FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
                                   F EM  S + P+  T+  ILP C+R+A L+ GK+ H
Sbjct: 534 NIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAH 593

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            + ++   ++  + +  +LV+MYA+ G +  A+  +D +S  + V++ +++    + G G
Sbjct: 594 AHSIKCG-YDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAMLTACAMHGHG 652

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
              + LF+ M      PDHVT ++VLS+C H G V  G + F+ M   Y + P L+H+  
Sbjct: 653 EEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLM-GYYNVKPTLKHYTS 711

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL  R+G L++A E+I KMP    S +W  LLG C  H N  +GE AAE+L+E  P N
Sbjct: 712 MVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPNN 771

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           SG YVL+AN++A    W  LA+VR  M+D G+ K PGC+W++  N    FL  D S+ +A
Sbjct: 772 SGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSPGCSWIEDKNEIHSFLACDRSHKRA 831

Query: 675 QEIYPLLGGLTELMK 689
           +EIY  L  L   MK
Sbjct: 832 EEIYATLDYLALHMK 846



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 162/578 (28%), Positives = 279/578 (48%), Gaps = 82/578 (14%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           GKQ+HA  I  G + +  +  KL+  YA   L  +A FL E   +R    W  ++S+Y+ 
Sbjct: 78  GKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLD 137

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA---CHEWSL 209
            G + EA  +++ +Q   +  D F +P V KAC  +  V+ GR +H  +     C   ++
Sbjct: 138 HGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFC--LNI 195

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           +V NAL+ MYGK G +D A+++  KM ERD+V+WN++I+A A+ G+  EA +   +M+  
Sbjct: 196 YVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSL 255

Query: 270 GVEV-NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALK 327
              + NV++W+ + GG  + G  +  +E+L RM+  E  + +  T+ G L AC+ +  L 
Sbjct: 256 DYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQV-EGLVPNAQTLAGVLPACARLQRLD 314

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF------------------- 368
           LGK++HG   R  +     V NAL+ +Y RC D+  A  +F                   
Sbjct: 315 LGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYC 374

Query: 369 ----------------KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNY 411
                            +  E+ +I+WNS++SGY      +E+  +F+ M    G+EP+ 
Sbjct: 375 ESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDS 434

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            T+ S+L  CA   +L+ GKE H   + + + ++   +  +LVEMY++   +  A+  FD
Sbjct: 435 FTLGSVLTACADTISLRQGKEIHAQAIVKGLQSD-TFVGGALVEMYSKCQDLTAAQVAFD 493

Query: 472 LMSRRDEVTYTSLIAGY--------------GIQGEG---------------------RV 496
            +  +D  T+ +LI+GY               ++G+G                      +
Sbjct: 494 EVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDL 553

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
            ++LF EM  ++++PD  T+  +L ACS    +  G KQ    +   G    +   A +V
Sbjct: 554 TMQLFSEMQISKLRPDIYTVGIILPACSRLATLERG-KQAHAHSIKCGYDTDVHIGAALV 612

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           D+Y + G L  A+    ++   P       +L AC +H
Sbjct: 613 DMYAKCGSLKYAQLAYDRIS-NPNLVSHNAMLTACAMH 649



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 156/330 (47%), Gaps = 17/330 (5%)

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           KLGK++H   ++  +     +   L+ MY+RC  L+ A  LF+    +++ +W ++LS Y
Sbjct: 76  KLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVY 135

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                 EE+  LF+ +   GVE ++     +   C+ + +++ G++ H  ++ +  F  +
Sbjct: 136 LDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVI-KFRFCLN 194

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           + + N+L++MY + G + +AK V   M  RD VT+ S+I      G    AL+  E+M  
Sbjct: 195 IYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKS 254

Query: 507 -NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
            +   P+ V+  AV+   + +G   E  +   RM  + G+ P  +  A ++    R   L
Sbjct: 255 LDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRM-QVEGLVPNAQTLAGVLPACARLQRL 313

Query: 566 NKAKEI---ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           +  K++   IT+  +     +   L+    ++R  G    AA+  L+   +N    VL  
Sbjct: 314 DLGKQLHGYITRHDFISNPVVVNALV---DVYRRCGDMGGAAKIFLKFSVKN----VLSC 366

Query: 623 NM----YAATGCWDKLAKVRTCMRDLGVRK 648
           N     Y  +G   K  ++  CM  LG+ +
Sbjct: 367 NTMIVGYCESGDVSKAKELFDCMDVLGIER 396


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 198/618 (32%), Positives = 322/618 (52%), Gaps = 47/618 (7%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
            +F   K  ++ Q +Q+ A  +   +EK   L+PK V        +N + FL   +    
Sbjct: 40  FLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAV----ELGDFNYSSFLFSVTEEPN 95

Query: 140 PLPWNLLI-SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
              +N +I  L      +  AL +Y++M+   ++ D FTY  V  AC ++ ++  GR VH
Sbjct: 96  HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 155

Query: 199 SCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
           S +     E  + ++++L+ MY K GQV  AR+LFD++ ERD VSWN+MIS Y+  G  K
Sbjct: 156 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 215

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           +A  LF +M+EEG E +  T  ++ G                                  
Sbjct: 216 DAMDLFRKMEEEGFEPDERTLVSMLG---------------------------------- 241

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            ACSH+G L+ G+ +   A+    G    + + LI+MY +C DL  A  +F    +K  +
Sbjct: 242 -ACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRV 300

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            W +M++ Y+    + E+  LF EM ++GV P+  T++++L  C  V  L+ GK+   + 
Sbjct: 301 AWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHA 360

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
              ++   ++ +   LV+MY + G+V EA  VF+ M  ++E T+ ++I  Y  QG  + A
Sbjct: 361 SELSL-QHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEA 419

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L LF+ M+   + P  +T + VLSAC H+GLV +G + F  M+S++G+ P++EH+  ++D
Sbjct: 420 LLLFDRMS---VPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIID 476

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR-PENSG 616
           L  RAG+L++A E + + P  P   M A +LGAC   ++  I E A   L+E +  +N+G
Sbjct: 477 LLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAG 536

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV-DDTSNVQAQ 675
            YV+ +N+ A    WD+ AK+R  MRD GV K PGC+W++       FL   D      +
Sbjct: 537 NYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLAGSDYLQCGRE 596

Query: 676 EIYPLLGGLTELMKDAGY 693
           +   L   L E MK   Y
Sbjct: 597 DSGSLFDLLVEEMKRERY 614



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 206/469 (43%), Gaps = 75/469 (15%)

Query: 56  AFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           A   + R++ +    D    +F  I   C K++ +  G+ +H+    +GLE++  +   L
Sbjct: 116 ALSLYRRMKFSGLKPDKFTYNFVFI--ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSL 173

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           +  YA       A  L +    R  + WN +IS Y   G+  +A+ ++++M+      D 
Sbjct: 174 IMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDE 233

Query: 176 FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            T  S+L AC  + D+  GR++    I      S F+ + L+SMYGK G +D ARR+F++
Sbjct: 234 RTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQ 293

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M+++D V+W  MI+ Y+  G   EAF+LF EM++ GV  +  T +T+             
Sbjct: 294 MIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTV------------- 340

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
                                 L AC  VGAL+LGK+I   A          V   L+ M
Sbjct: 341 ----------------------LSACGSVGALELGKQIETHASELSLQHNIYVATGLVDM 378

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +C  +  A  +F+    K+  TWN+M++ Y H   A+E+  LF  M    V P+ +T 
Sbjct: 379 YGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITF 435

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
             +L  C     +  G  +                ++ +  M+    K+    ++ DL+S
Sbjct: 436 IGVLSACVHAGLVHQGCRY----------------FHEMSSMFGLVPKIEHYTNIIDLLS 479

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           R             G+  E       +E M +   KPD + + A+L AC
Sbjct: 480 RA------------GMLDEA------WEFMERFPGKPDEIMLAAILGAC 510


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 209/687 (30%), Positives = 327/687 (47%), Gaps = 98/687 (14%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           EKN      +VT Y      + A  L +    R  + W ++IS YV    Y EA  V+ +
Sbjct: 292 EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVK 351

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDF-GRVVHSCIDACHEWSLFVHNALVSMYGKFGQ 224
           M     R D   +  VL A   + D++  G +    I   +E  + V +A+++ Y + G 
Sbjct: 352 MCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGS 411

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV----------- 273
           +D+A   F+ M ER+  SW TMI+A+A  G   +A QL+  + E+ V             
Sbjct: 412 LDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQV 471

Query: 274 ----------------NVITWNTIAGGCLRTGNFKGVLELLSRM---------------- 301
                           NV+ WN I  G  + G  K   +L  +M                
Sbjct: 472 GRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFV 531

Query: 302 ----------------RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GC-YGE 343
                           R+     DS  T   L AC+++G +++G+ IH  A++ GC +  
Sbjct: 532 QNEESREALELLIELHRSGSVPSDSSFTS-ALSACANIGDVEIGRVIHSLAIKTGCQFNS 590

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG------------------ 385
           Y  V N LI+MY++C ++     +F+    K  ++WNS++SG                  
Sbjct: 591 Y--VMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMP 648

Query: 386 -------------YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
                        Y      E +  LF +M   G++PN +T+ S+L  C  +  ++ G++
Sbjct: 649 KRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ 708

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
           FH  I +   F+  L + NSL+ MY + G   +   VF+ M   D +T+ +++ G    G
Sbjct: 709 FHALIFKLG-FDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNG 766

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G+ A+K+FE+M    I PD ++ + VL ACSH+GLV EG   F  MT  YGI P + H+
Sbjct: 767 LGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHY 826

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CMVDL GRAG L++A+ +I  MP  P S +W  LLGAC+IHRN  +G+  AE+L +   
Sbjct: 827 TCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTK 886

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
             S  YVL++N++A+ G WDK+A++R  M+D G+ K PG +W+   N    F+  D ++ 
Sbjct: 887 PKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHD 946

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEF 699
           Q +EIY  L       +  GY+    F
Sbjct: 947 QIEEIYSALKEYYGCFRATGYMPDTNF 973



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/533 (24%), Positives = 238/533 (44%), Gaps = 66/533 (12%)

Query: 47  FAGRGNLSKAFEAFTRI-RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           FA  G L  A + + R+   T A+   ++ ++A +    G+++                L
Sbjct: 437 FAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQV----GRIQKAR-------------L 479

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEA 159
             + +L P +V + A  + Y     L E  ++   +P      W  +I+ +V++    EA
Sbjct: 480 IFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREA 539

Query: 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSM 218
           L +  ++        + ++ S L AC  + DV+ GRV+HS  I    +++ +V N L+SM
Sbjct: 540 LELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISM 599

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G V+    +F  +  +D VSWN++IS  +   +  +A  +F +M +     +V++W
Sbjct: 600 YAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKR----DVVSW 655

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
             I    ++ G+ +  L+L   M  +    + +     L AC ++GA+KLG++ H    +
Sbjct: 656 TAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFK 715

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             +  +  V N+LITMY +C      + +F+   E  +ITWN++L G       +E+  +
Sbjct: 716 LGFDTFLFVGNSLITMYFKC-GYEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKI 774

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           F +M   G+ P+ ++   +L  C+                   + +E    +NS+ + Y 
Sbjct: 775 FEQMEVEGILPDQMSFLGVLCACSHA----------------GLVDEGWAHFNSMTQKYG 818

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
               V     + DL+ R          AGY  + E      L E M    +KPD V   A
Sbjct: 819 IMPLVYHYTCMVDLLGR----------AGYLSEAEA-----LIENM---PVKPDSVIWEA 860

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           +L AC     V  GQ+  ER+  +    P+   +  + +L+   G+ +K  EI
Sbjct: 861 LLGACRIHRNVELGQRVAERLFQMTK--PKSATYVLLSNLFASQGMWDKVAEI 911



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 183/382 (47%), Gaps = 23/382 (6%)

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           LF  N  +   G+ G+V+ ARR+F++M++RD VSWN+MI+ Y+  G   EA  LF    +
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF----D 226

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
             V  N+ TW  +  G  + G  +   E+   M T+   +   A + G       G LK 
Sbjct: 227 AFVGKNIRTWTILLTGYAKEGRIEEAREVFESM-TERNVVSWNAMISGY---VQNGDLKN 282

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
            +++           +    N+++T Y  C  +  A  LF    E++ ++W  M+SGY H
Sbjct: 283 ARKLFDEMPEKNVASW----NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVH 338

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
           +    E+  +F +M R+   P+      +L     + +L+         ++   +   ++
Sbjct: 339 ISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTG-YEGDVV 397

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           + ++++  Y R+G +  A   F+ M  R+E ++T++IA +   G    A++L+E + +  
Sbjct: 398 VGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQT 457

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           +     T  A+++A +  G + + +  F+ + +     P +  +  ++  Y + G+L +A
Sbjct: 458 V----ATKTAMMTAYAQVGRIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEA 508

Query: 569 KEIITKMPYTPTSAMWATLLGA 590
           K++  KMP    SA WA ++  
Sbjct: 509 KDLFQKMP-VKNSASWAAMIAG 529



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 188/409 (45%), Gaps = 43/409 (10%)

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV 211
           R G   EA  V+ +M    I+ D  ++ S++    +   VD  R++    DA    ++  
Sbjct: 183 RLGRVEEARRVFNEM----IQRDVVSWNSMINGYSQNGKVDEARLL---FDAFVGKNIRT 235

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
              L++ Y K G+++ AR +F+ M ER+ VSWN MIS Y   G  K A +LF EM E+ V
Sbjct: 236 WTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNV 295

Query: 272 ---------------------------EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
                                      E N ++W  +  G +   ++    ++  +M   
Sbjct: 296 ASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRT 355

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
               D    V+ L A + +  L+L   +   A++  Y     V +A++  Y+R   L  A
Sbjct: 356 VARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLA 415

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
              F+   E++  +W +M++ +      +++  L+  +     E    T  +++   A+V
Sbjct: 416 MHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERV----PEQTVATKTAMMTAYAQV 471

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
             +Q  +     ++   + N +++ WN+++  Y ++G + EAK +F  M  ++  ++ ++
Sbjct: 472 GRIQKAR-----LIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAM 526

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           IAG+    E R AL+L  E++++   P   +  + LSAC++ G V  G+
Sbjct: 527 IAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGR 575



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 26/206 (12%)

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           HL   N+ ++   R G+V EA+ VF+ M +RD V++ S+I GY   G+   A  LF+   
Sbjct: 170 HLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFV 229

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
              I+    T   +L+  +  G + E ++ FE MT        +  +  M+  Y + G L
Sbjct: 230 GKNIR----TWTILLTGYAKEGRIEEAREVFESMTE-----RNVVSWNAMISGYVQNGDL 280

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY-------- 617
             A+++  +MP    ++  + + G C  +R +      A +L +  PE +          
Sbjct: 281 KNARKLFDEMPEKNVASWNSVVTGYCHCYRMS-----EARELFDQMPERNSVSWMVMISG 335

Query: 618 YVLIANMYAATGCWDKLAKV-RTCMR 642
           YV I++ + A   WD   K+ RT  R
Sbjct: 336 YVHISDYWEA---WDVFVKMCRTVAR 358


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 198/618 (32%), Positives = 322/618 (52%), Gaps = 47/618 (7%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
            +F   K  ++ Q +Q+ A  +   +EK   L+PK V        +N + FL   +    
Sbjct: 36  FLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAV----ELGDFNYSSFLFSVTEEPN 91

Query: 140 PLPWNLLI-SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
              +N +I  L      +  AL +Y++M+   ++ D FTY  V  AC ++ ++  GR VH
Sbjct: 92  HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 151

Query: 199 SCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
           S +     E  + ++++L+ MY K GQV  AR+LFD++ ERD VSWN+MIS Y+  G  K
Sbjct: 152 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 211

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           +A  LF +M+EEG E +  T  ++ G                                  
Sbjct: 212 DAMDLFRKMEEEGFEPDERTLVSMLG---------------------------------- 237

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            ACSH+G L+ G+ +   A+    G    + + LI+MY +C DL  A  +F    +K  +
Sbjct: 238 -ACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRV 296

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            W +M++ Y+    + E+  LF EM ++GV P+  T++++L  C  V  L+ GK+   + 
Sbjct: 297 AWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHA 356

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
              ++   ++ +   LV+MY + G+V EA  VF+ M  ++E T+ ++I  Y  QG  + A
Sbjct: 357 SELSL-QHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEA 415

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L LF+ M+   + P  +T + VLSAC H+GLV +G + F  M+S++G+ P++EH+  ++D
Sbjct: 416 LLLFDRMS---VPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIID 472

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR-PENSG 616
           L  RAG+L++A E + + P  P   M A +LGAC   ++  I E A   L+E +  +N+G
Sbjct: 473 LLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAG 532

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV-DDTSNVQAQ 675
            YV+ +N+ A    WD+ AK+R  MRD GV K PGC+W++       FL   D      +
Sbjct: 533 NYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLAGSDYLQCGRE 592

Query: 676 EIYPLLGGLTELMKDAGY 693
           +   L   L E MK   Y
Sbjct: 593 DSGSLFDLLVEEMKRERY 610



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 206/469 (43%), Gaps = 75/469 (15%)

Query: 56  AFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           A   + R++ +    D    +F  I   C K++ +  G+ +H+    +GLE++  +   L
Sbjct: 112 ALSLYRRMKFSGLKPDKFTYNFVFI--ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSL 169

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           +  YA       A  L +    R  + WN +IS Y   G+  +A+ ++++M+      D 
Sbjct: 170 IMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDE 229

Query: 176 FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            T  S+L AC  + D+  GR++    I      S F+ + L+SMYGK G +D ARR+F++
Sbjct: 230 RTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQ 289

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M+++D V+W  MI+ Y+  G   EAF+LF EM++ GV  +  T +T+             
Sbjct: 290 MIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTV------------- 336

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
                                 L AC  VGAL+LGK+I   A          V   L+ M
Sbjct: 337 ----------------------LSACGSVGALELGKQIETHASELSLQHNIYVATGLVDM 374

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +C  +  A  +F+    K+  TWN+M++ Y H   A+E+  LF  M    V P+ +T 
Sbjct: 375 YGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITF 431

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
             +L  C     +  G  +                ++ +  M+    K+    ++ DL+S
Sbjct: 432 IGVLSACVHAGLVHQGCRY----------------FHEMSSMFGLVPKIEHYTNIIDLLS 475

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           R             G+  E       +E M +   KPD + + A+L AC
Sbjct: 476 RA------------GMLDEA------WEFMERFPGKPDEIMLAAILGAC 506


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 201/616 (32%), Positives = 314/616 (50%), Gaps = 65/616 (10%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA----------CG 186
           +R  + +N +I+ Y  +G    AL +++ M+    R D+FT+ SVL A          CG
Sbjct: 109 MRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG 168

Query: 187 EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQ--------VDVARRLFDKMLER 238
           +M      +    C+ +       V NAL+S+Y K           +  AR+LFD+M +R
Sbjct: 169 QM-HCAVVKTGMGCVSSS------VLNALLSVYVKRASELGISCSAMVSARKLFDEMPKR 221

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           D ++W TMI+ Y        A ++F  M    VE     WN +  G +  G F+  L L 
Sbjct: 222 DELTWTTMITGYVRNDDLNGAREVFEAM----VENLGAAWNAMISGYVHCGCFQEALTLC 277

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN----VRNALITM 354
            +MR      D +     + AC++VG+ ++GK++H   ++       +    V NALIT+
Sbjct: 278 RKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITL 337

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF----------------- 397
           Y +   +  A  +F     ++IITWN++LSGY +    EE+                   
Sbjct: 338 YCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMI 397

Query: 398 --------------LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
                         LF++M   G EP     A  L  C+ +  L++G++ H  ++    +
Sbjct: 398 SGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLG-Y 456

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
              L + N+++ MYA+ G V  A+SVF  M   D V++ S+IA  G  G G  A++LF++
Sbjct: 457 ESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQ 516

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M K  + PD +T + VL+ACSH+GLV +G+  F  M   YGI P  +H+A MVDL+ RAG
Sbjct: 517 MLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAG 576

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
           + + A+ +I  MP  P + +W  LL  C+IH N  +G  AAE+L +  P+N G YVL++N
Sbjct: 577 MFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSN 636

Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGG 683
           +YA  G W+++AKVR  MRD  VRK P C+W++  N    F+VDD  + +   +Y  L  
Sbjct: 637 IYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQ 696

Query: 684 LTELMKDAGYVVKEEF 699
           L   MK  GY+   +F
Sbjct: 697 LGLEMKKLGYIPDTKF 712



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 193/462 (41%), Gaps = 89/462 (19%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L+ MY K   +  AR+LF+++   DA++  T+I+AY + G  +   ++F      G  
Sbjct: 52  NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIF-----NGTP 106

Query: 273 V---NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS-HVGALKL 328
           +   + + +N +  G    G+    LEL   MR  +   D       L A    VG  + 
Sbjct: 107 LYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQ 166

Query: 329 GKEIHGSAVR---GCYGEYENVRNAL---------------------------------- 351
             ++H + V+   GC     +V NAL                                  
Sbjct: 167 CGQMHCAVVKTGMGCVS--SSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDEL 224

Query: 352 -----ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
                IT Y R  DL  A  +F+   E     WN+M+SGY H  C +E+  L R+M   G
Sbjct: 225 TWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG 284

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH-------------------- 446
           ++ + +T  +I+  CA V + Q GK+ H YIL+  +   H                    
Sbjct: 285 IQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKV 344

Query: 447 --------------LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
                         ++ WN+++  Y  +G++ EAKS F+ M  ++ +T T +I+G    G
Sbjct: 345 DEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNG 404

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G   LKLF++M  +  +P        L+ACS  G +  G++   ++  + G    L   
Sbjct: 405 FGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL-GYESSLSVG 463

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
             M+ +Y + G++  A+ +   MP     + W +++ A   H
Sbjct: 464 NAMISMYAKCGVVEAAESVFVTMPSVDLVS-WNSMIAALGQH 504



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 172/412 (41%), Gaps = 87/412 (21%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   +A     ++R      D +  ++  II  C  V +   GKQ+HA    L  E NP 
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDI--TYTTIISACANVGSFQMGKQVHA--YILKNELNPN 323

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYV------------- 151
               L    A  +LY     + E   I Y +P      WN ++S YV             
Sbjct: 324 HSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFE 383

Query: 152 ------------------RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
                             ++GF  E L ++KQM+       +F +   L AC  +  ++ 
Sbjct: 384 EMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALEN 443

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR +H+  +   +E SL V NA++SMY K G V+ A  +F  M   D VSWN+MI+A   
Sbjct: 444 GRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQ 503

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G   +A +LF +M +EGV  + IT+ T+                               
Sbjct: 504 HGHGVKAIELFDQMLKEGVFPDRITFLTV------------------------------- 532

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYG--EYENVRNALITMYSRCKDLRHAYILF-K 369
               L ACSH G ++ G+    S +   YG    E+    ++ ++ R     +A I+   
Sbjct: 533 ----LTACSHAGLVEKGRHYFNSMLES-YGITPCEDHYARMVDLFCRAGMFSYARIVIDS 587

Query: 370 MTAEKSIITWNSMLSG---YTHLDCAEESA-FLFREMFRSGVEPNYVTIASI 417
           M ++     W ++L+G   + ++D   E+A  LF+ M ++  +  YV +++I
Sbjct: 588 MPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQN--DGTYVLLSNI 637



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG +P    +  +L +  + +NL + ++     L   + N   +   +L+  Y   G
Sbjct: 39  MIASGFKPRGHFLNRLLEMYCKSSNLVYARQ-----LFEEIPNPDAIARTTLITAYCALG 93

Query: 462 KVPEAKSVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            +   + +F+   +  RD V Y ++I GY   G+G  AL+LF  M ++  +PD  T  +V
Sbjct: 94  NLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSV 153

Query: 520 LSA 522
           LSA
Sbjct: 154 LSA 156



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 23/226 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA  +  C  + AL  G+QLHA  + LG E +  +   +++ YA   +   A    E+ 
Sbjct: 427 AFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA----ESV 482

Query: 136 NIRYP----LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +  P    + WN +I+   + G   +A+ ++ QM    +  D  T+ +VL AC     V
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542

Query: 192 DFGR-VVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKMLERD-AVSWNTMIS 248
           + GR   +S +++        H A +V ++ + G    AR + D M  +  A  W  +++
Sbjct: 543 EKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLA 602

Query: 249 A---YASKGLWKEAF-QLFVEM-QEEGVEV-------NVITWNTIA 282
               + +  L  EA  QLF  M Q +G  V       +V  WN +A
Sbjct: 603 GCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVA 648


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 197/653 (30%), Positives = 333/653 (50%), Gaps = 62/653 (9%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           +A ++  C  +  L  G QLHA A+      + ++    +  YA      +A  L +NS 
Sbjct: 284 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSE 343

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
                 +N +I+ Y ++    +AL ++ ++ S  +  D  +   V +AC  +  +  G  
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           ++   I +     + V NA + MYGK   +  A R+FD+M  RDAVSWN +I+A+   G 
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 463

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             E   LFV M    +E +  T+ +I   C  TG                          
Sbjct: 464 GYETLFLFVSMLRSRIEPDEFTFGSILKAC--TG-------------------------- 495

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
                   G+L  G EIH S V+       +V  +LI MYS+C  +  A  +     +++
Sbjct: 496 --------GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRA 547

Query: 376 --------------------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
                                ++WNS++SGY   + +E++  LF  M   G+ P+  T A
Sbjct: 548 NVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYA 607

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           ++L  CA +A+   GK+ H  ++++ + ++ + + ++LV+MY++ G + +++ +F+   R
Sbjct: 608 TVLDTCANLASAGLGKQIHAQVIKKELQSD-VYICSTLVDMYSKCGDLHDSRLMFEKSLR 666

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RD VT+ ++I GY   G+G  A++LFE M    IKP+HVT +++L AC+H GL+ +G + 
Sbjct: 667 RDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEY 726

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  M   YG+ PQL H++ MVD+ G++G + +A E+I +MP+     +W TLLG C IHR
Sbjct: 727 FYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHR 786

Query: 596 NT-GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           N   + E A   LL   P++S  Y L++N+YA  G W+K++ +R  MR   ++K PGC+W
Sbjct: 787 NNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSW 846

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK---DAGYVVKEEFCSEEE 704
           V+  +    FLV D ++ + +EIY  LG +   MK   D+ +V   E   E++
Sbjct: 847 VELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFDDSSFVRGVEVEEEDQ 899



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/548 (23%), Positives = 246/548 (44%), Gaps = 92/548 (16%)

Query: 70  HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           + V   +F+ +   C K  AL  GKQ HA  I  G      ++  L+  Y +   + +A 
Sbjct: 44  NSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSAS 103

Query: 130 FLVE------------------NSN-------------IRYPLPWNLLISLYVRDGFYAE 158
            + +                   SN             +R  + WN ++S Y+++G   +
Sbjct: 104 MVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLK 163

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALV 216
           ++ V+  M    I  D  T+  +LK C  + D   G  +H  +    C +  +   +AL+
Sbjct: 164 SIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALL 222

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K  +   + R+F  + E+++VSW+ +I+      L   A + F EMQ    +VN  
Sbjct: 223 DMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ----KVNAG 278

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
              +I    LR+                               C+ +  L+LG ++H  A
Sbjct: 279 VSQSIYASVLRS-------------------------------CAALSELRLGGQLHAHA 307

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  +     VR A + MY++C +++ A ILF  +   +  ++N+M++GY+  +   ++ 
Sbjct: 308 LKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKAL 367

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF  +  SG+  + ++++ +   CA V  L  G + +   ++ ++ +  + + N+ ++M
Sbjct: 368 LLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSL-SLDVCVANAAIDM 426

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y +   + EA  VFD M RRD V++ ++IA +   G+G   L LF  M +++I+PD  T 
Sbjct: 427 YGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTF 486

Query: 517 VAVLSACS----------HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
            ++L AC+          HS +V  G      M S   +   L      +D+Y + G++ 
Sbjct: 487 GSILKACTGGSLGYGMEIHSSIVKSG------MASNSSVGCSL------IDMYSKCGMIE 534

Query: 567 KAKEIITK 574
           +A++I ++
Sbjct: 535 EAEKIHSR 542



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 210/458 (45%), Gaps = 20/458 (4%)

Query: 31  NNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKAL 90
           N+E++ R +    +  ++   +  KA   F R+  +    D +  S + +   C  VK L
Sbjct: 341 NSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEI--SLSGVFRACALVKGL 398

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           ++G Q++  AI   L  +  +    +  Y        A  + +    R  + WN +I+ +
Sbjct: 399 SEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAH 458

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSL 209
            ++G   E L ++  M   RI  D FT+ S+LKAC     + +G  +HS I  +    + 
Sbjct: 459 EQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNS 517

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            V  +L+ MY K G ++ A ++  +  +R  VS           G  +E      +M  +
Sbjct: 518 SVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEE----LEKMHNK 562

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
            ++   ++WN+I  G +     +    L +RM       D       L  C+++ +  LG
Sbjct: 563 RLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 622

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           K+IH   ++        + + L+ MYS+C DL  + ++F+ +  +  +TWN+M+ GY H 
Sbjct: 623 KQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH 682

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              EE+  LF  M    ++PN+VT  SIL  CA +  +  G E+   + R    +  L  
Sbjct: 683 GKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPH 742

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIA 486
           ++++V++  +SGKV  A  +   M    D+V + +L+ 
Sbjct: 743 YSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 780



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 141/597 (23%), Positives = 248/597 (41%), Gaps = 68/597 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA I+  C  ++  + G Q+H   + +G + + V    L+  YA    +  +  + +  
Sbjct: 182 TFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGI 241

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + W+ +I+  V++   + AL  +K+MQ          Y SVL++C  + ++  G 
Sbjct: 242 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 301

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+  + +       V  A + MY K   +  A+ LFD     +  S+N MI+ Y+   
Sbjct: 302 QLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYS--- 358

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                       QEE                     FK +L L  R+ +     D ++  
Sbjct: 359 ------------QEE-------------------HGFKALL-LFHRLMSSGLGFDEISLS 386

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
               AC+ V  L  G +I+G A++        V NA I MY +C+ L  A+ +F     +
Sbjct: 387 GVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRR 446

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             ++WN++++ +       E+ FLF  M RS +EP+  T  SIL  C    +L +G E H
Sbjct: 447 DAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIH 505

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE---------------- 478
             I++  M +    +  SL++MY++ G + EA+ +     +R                  
Sbjct: 506 SSIVKSGMASNS-SVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRL 564

Query: 479 ----VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
               V++ S+I+GY ++ +   A  LF  M +  I PD  T   VL  C++      G K
Sbjct: 565 QEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG-K 623

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           Q         +   +   + +VD+Y + G L+ ++ +  K         W  ++     H
Sbjct: 624 QIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEK-SLRRDFVTWNAMICGYAHH 682

Query: 595 RNTGIGEWAAE----KLLETRPENSGYYVLIANMYAATGCWDK-LAKVRTCMRDLGV 646
              G GE A +     +LE    N   ++ I    A  G  DK L       RD G+
Sbjct: 683 ---GKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGL 736



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 204/442 (46%), Gaps = 27/442 (6%)

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q   +   NF++  V K C +   ++ G+  H+  I +    + FV N L+ +Y      
Sbjct: 42  QVNSVSTTNFSF--VFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDF 99

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A  +FDKM  RD VSWN MI+ Y+      +A   F  M       +V++WN++  G 
Sbjct: 100 VSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVR----DVVSWNSMLSGY 155

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEY 344
           L+ G     +E+   M  +    D     I L  CS +    LG +IHG  VR GC  + 
Sbjct: 156 LQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDV 215

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
               +AL+ MY++ K    +  +F+   EK+ ++W+++++G    +    +   F+EM +
Sbjct: 216 V-AASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQK 274

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
                +    AS+L  CA ++ L+ G + H + L ++ F    ++  + ++MYA+   + 
Sbjct: 275 VNAGVSQSIYASVLRSCAALSELRLGGQLHAHAL-KSDFAADGIVRTATLDMYAKCDNMQ 333

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           +A+ +FD     +  +Y ++I GY  +  G  AL LF  +  + +  D +++  V  AC+
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393

Query: 525 HSGLVVEGQKQFERMTSIYG--IFPQLEHFACM----VDLYGRAGLLNKAKEIITKMPYT 578
               + EG +       IYG  I   L    C+    +D+YG+   L +A  +  +M   
Sbjct: 394 LVKGLSEGLQ-------IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRR 446

Query: 579 PTSAMWATLLGACQIHRNTGIG 600
              + W  ++ A   H   G G
Sbjct: 447 DAVS-WNAIIAA---HEQNGKG 464


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 197/653 (30%), Positives = 333/653 (50%), Gaps = 62/653 (9%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           +A ++  C  +  L  G QLHA A+      + ++    +  YA      +A  L +NS 
Sbjct: 242 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSE 301

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
                 +N +I+ Y ++    +AL ++ ++ S  +  D  +   V +AC  +  +  G  
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           ++   I +     + V NA + MYGK   +  A R+FD+M  RDAVSWN +I+A+   G 
Sbjct: 362 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 421

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             E   LFV M    +E +  T+ +I   C  TG                          
Sbjct: 422 GYETLFLFVSMLRSRIEPDEFTFGSILKAC--TG-------------------------- 453

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
                   G+L  G EIH S V+       +V  +LI MYS+C  +  A  +     +++
Sbjct: 454 --------GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRA 505

Query: 376 --------------------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
                                ++WNS++SGY   + +E++  LF  M   G+ P+  T A
Sbjct: 506 NVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYA 565

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           ++L  CA +A+   GK+ H  ++++ + ++ + + ++LV+MY++ G + +++ +F+   R
Sbjct: 566 TVLDTCANLASAGLGKQIHAQVIKKELQSD-VYICSTLVDMYSKCGDLHDSRLMFEKSLR 624

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RD VT+ ++I GY   G+G  A++LFE M    IKP+HVT +++L AC+H GL+ +G + 
Sbjct: 625 RDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEY 684

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  M   YG+ PQL H++ MVD+ G++G + +A E+I +MP+     +W TLLG C IHR
Sbjct: 685 FYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHR 744

Query: 596 NT-GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           N   + E A   LL   P++S  Y L++N+YA  G W+K++ +R  MR   ++K PGC+W
Sbjct: 745 NNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSW 804

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK---DAGYVVKEEFCSEEE 704
           V+  +    FLV D ++ + +EIY  LG +   MK   D+ +V   E   E++
Sbjct: 805 VELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFDDSSFVRGVEVEEEDQ 857



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/526 (23%), Positives = 239/526 (45%), Gaps = 76/526 (14%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE---------- 133
           C K  AL  GKQ HA  I  G      ++  L+  Y +   + +A  + +          
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 134 --------NSN-------------IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
                    SN             +R  + WN ++S Y+++G   +++ V+  M    I 
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARR 230
            D  T+  +LK C  + D   G  +H  +    C +  +   +AL+ MY K  +   + R
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALLDMYAKGKRFVESLR 194

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +F  + E+++VSW+ +I+      L   A + F EMQ    +VN     +I    LR+  
Sbjct: 195 VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ----KVNAGVSQSIYASVLRS-- 248

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                                        C+ +  L+LG ++H  A++  +     VR A
Sbjct: 249 -----------------------------CAALSELRLGGQLHAHALKSDFAADGIVRTA 279

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
            + MY++C +++ A ILF  +   +  ++N+M++GY+  +   ++  LF  +  SG+  +
Sbjct: 280 TLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFD 339

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            ++++ +   CA V  L  G + +   ++ ++ +  + + N+ ++MY +   + EA  VF
Sbjct: 340 EISLSGVFRACALVKGLSEGLQIYGLAIKSSL-SLDVCVANAAIDMYGKCQALAEAFRVF 398

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           D M RRD V++ ++IA +   G+G   L LF  M +++I+PD  T  ++L AC+   L  
Sbjct: 399 DEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSL-- 456

Query: 531 EGQKQFERMTSIY--GIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
                 E  +SI   G+         ++D+Y + G++ +A++I ++
Sbjct: 457 --GYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 500



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 210/458 (45%), Gaps = 20/458 (4%)

Query: 31  NNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKAL 90
           N+E++ R +    +  ++   +  KA   F R+  +    D +  S + +   C  VK L
Sbjct: 299 NSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEI--SLSGVFRACALVKGL 356

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           ++G Q++  AI   L  +  +    +  Y        A  + +    R  + WN +I+ +
Sbjct: 357 SEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAH 416

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSL 209
            ++G   E L ++  M   RI  D FT+ S+LKAC     + +G  +HS I  +    + 
Sbjct: 417 EQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNS 475

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            V  +L+ MY K G ++ A ++  +  +R  VS           G  +E      +M  +
Sbjct: 476 SVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEE----LEKMHNK 520

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
            ++   ++WN+I  G +     +    L +RM       D       L  C+++ +  LG
Sbjct: 521 RLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 580

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           K+IH   ++        + + L+ MYS+C DL  + ++F+ +  +  +TWN+M+ GY H 
Sbjct: 581 KQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH 640

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              EE+  LF  M    ++PN+VT  SIL  CA +  +  G E+   + R    +  L  
Sbjct: 641 GKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPH 700

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIA 486
           ++++V++  +SGKV  A  +   M    D+V + +L+ 
Sbjct: 701 YSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 738



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 141/597 (23%), Positives = 248/597 (41%), Gaps = 68/597 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA I+  C  ++  + G Q+H   + +G + + V    L+  YA    +  +  + +  
Sbjct: 140 TFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGI 199

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + W+ +I+  V++   + AL  +K+MQ          Y SVL++C  + ++  G 
Sbjct: 200 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 259

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+  + +       V  A + MY K   +  A+ LFD     +  S+N MI+ Y+   
Sbjct: 260 QLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYS--- 316

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                       QEE                     FK +L L  R+ +     D ++  
Sbjct: 317 ------------QEE-------------------HGFKALL-LFHRLMSSGLGFDEISLS 344

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
               AC+ V  L  G +I+G A++        V NA I MY +C+ L  A+ +F     +
Sbjct: 345 GVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRR 404

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             ++WN++++ +       E+ FLF  M RS +EP+  T  SIL  C    +L +G E H
Sbjct: 405 DAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIH 463

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE---------------- 478
             I++  M +    +  SL++MY++ G + EA+ +     +R                  
Sbjct: 464 SSIVKSGMASNS-SVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRL 522

Query: 479 ----VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
               V++ S+I+GY ++ +   A  LF  M +  I PD  T   VL  C++      G K
Sbjct: 523 QEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG-K 581

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           Q         +   +   + +VD+Y + G L+ ++ +  K         W  ++     H
Sbjct: 582 QIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEK-SLRRDFVTWNAMICGYAHH 640

Query: 595 RNTGIGEWAAE----KLLETRPENSGYYVLIANMYAATGCWDK-LAKVRTCMRDLGV 646
              G GE A +     +LE    N   ++ I    A  G  DK L       RD G+
Sbjct: 641 ---GKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGL 694



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 196/424 (46%), Gaps = 25/424 (5%)

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           C +   ++ G+  H+  I +    + FV N L+ +Y        A  +FDKM  RD VSW
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           N MI+ Y+      +A   F  M       +V++WN++  G L+ G     +E+   M  
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVR----DVVSWNSMLSGYLQNGESLKSIEVFVDMGR 131

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLR 362
           +    D     I L  CS +    LG +IHG  VR GC  +     +AL+ MY++ K   
Sbjct: 132 EGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVV-AASALLDMYAKGKRFV 190

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
            +  +F+   EK+ ++W+++++G    +    +   F+EM +     +    AS+L  CA
Sbjct: 191 ESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 250

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            ++ L+ G + H + L ++ F    ++  + ++MYA+   + +A+ +FD     +  +Y 
Sbjct: 251 ALSELRLGGQLHAHAL-KSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYN 309

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           ++I GY  +  G  AL LF  +  + +  D +++  V  AC+    + EG +       I
Sbjct: 310 AMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ-------I 362

Query: 543 YG--IFPQLEHFACM----VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           YG  I   L    C+    +D+YG+   L +A  +  +M      + W  ++ A   H  
Sbjct: 363 YGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVS-WNAIIAA---HEQ 418

Query: 597 TGIG 600
            G G
Sbjct: 419 NGKG 422


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 192/651 (29%), Positives = 343/651 (52%), Gaps = 42/651 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +AG  +  +AF+ F ++  +    D V  +F  ++  C          Q+HA A+ LG +
Sbjct: 116 YAGNNHFDEAFKLFRQMCRSCTLPDYV--TFTTLLPGCNDAVPQNAVGQVHAFAVKLGFD 173

Query: 107 KNPVLV--PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
            N  L     L+  Y      + AC L E    +  + +N LI+ Y +DG Y EA+ ++ 
Sbjct: 174 TNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFL 233

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M+    +  +FT+  VLKA   + D   G+ +H   +         V N ++  Y K  
Sbjct: 234 KMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHD 293

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +V   R LF++M E D VS+N +IS+Y+    ++E+  LF EMQ  G +           
Sbjct: 294 RVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRR--------- 344

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                 NF                    AT++ + A  ++ +L++G+++H  A+      
Sbjct: 345 ------NF------------------PFATMLSIAA--NLSSLQVGRQVHCQAIVATADS 378

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             +V N+L+ MY++C+    A ++FK  +++S ++W +++SGY           LF +M 
Sbjct: 379 ILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMR 438

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
            + +  +  T A++L   A  A+L  GK+ H +I+R     E++   + LV+MYA+ G +
Sbjct: 439 GANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNL-ENVFSGSGLVDMYAKCGSI 497

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A  VF+ M  R+ V++ +LI+ Y   G+G  A+  F +M ++ ++PD V+++ VL AC
Sbjct: 498 KDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIAC 557

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           SH G V +G + F+ M+ IYGI P+ +H+ACM+DL GR G   +A++++ +MP+ P   M
Sbjct: 558 SHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIM 617

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLET-RPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           W+++L AC+I++N  + E AAE+L    +  ++  YV ++N+YAA G W+ +  V+  MR
Sbjct: 618 WSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMR 677

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           + G++K+P  +WV+  +    F  +D ++    EI   +  LT  ++  GY
Sbjct: 678 ERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGY 728



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 134/500 (26%), Positives = 241/500 (48%), Gaps = 44/500 (8%)

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN V    +++ Y      ++A  L +    R  + W +L+  Y  +  + EA  +++QM
Sbjct: 73  KNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQM 132

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF--VHNALVSMYGKFG 223
                  D  T+ ++L  C + +  +    VH+  +    + +LF  V N L+  Y +  
Sbjct: 133 CRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVR 192

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++D+A  LF+++L++D+V++NT+I+ Y   GL+ EA  LF++M++ G + +  T      
Sbjct: 193 RLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFT------ 246

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                  F GVL+                 V+GL          LG+++HG +V   +  
Sbjct: 247 -------FSGVLK----------------AVVGLHD------FALGQQLHGLSVTTGFSR 277

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             +V N ++  YS+   +     LF    E   +++N ++S Y+  +  EES  LFREM 
Sbjct: 278 DASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQ 337

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
             G +      A++L + A +++LQ G++ HC  +  A  +  L + NSLV+MYA+    
Sbjct: 338 CMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAI-VATADSILHVGNSLVDMYAKCEMF 396

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            EA+ +F  +S+R  V++T+LI+GY  +G     LKLF +M    ++ D  T   VL A 
Sbjct: 397 DEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKAS 456

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           +    ++ G KQ        G    +   + +VD+Y + G +  A ++  +MP    +  
Sbjct: 457 AGFASLLLG-KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVS 514

Query: 584 WATLLGACQIHRNTGIGEWA 603
           W  L+ A   + + G GE A
Sbjct: 515 WNALISA---YADNGDGEAA 531



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 166/370 (44%), Gaps = 13/370 (3%)

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           GQV  A +++D+M  ++ VS NTMIS Y   G    A  LF  M +      V+TW  + 
Sbjct: 58  GQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDR----TVVTWTILM 113

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
           G      +F    +L  +M    T  D V     L  C+         ++H  AV+  + 
Sbjct: 114 GWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFD 173

Query: 343 E--YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
              +  V N L+  Y   + L  A +LF+   +K  +T+N++++GY       E+  LF 
Sbjct: 174 TNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFL 233

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M +SG +P+  T + +L     + +   G++ H   +    F+    + N ++  Y++ 
Sbjct: 234 KMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTG-FSRDASVGNQILHFYSKH 292

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
            +V E +++F+ M   D V+Y  +I+ Y    +   +L LF EM        +     +L
Sbjct: 293 DRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATML 352

Query: 521 S-ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYT 578
           S A + S L V  Q   +   +I      + H    +VD+Y +  + ++A E+I K    
Sbjct: 353 SIAANLSSLQVGRQVHCQ---AIVATADSILHVGNSLVDMYAKCEMFDEA-ELIFKSLSQ 408

Query: 579 PTSAMWATLL 588
            ++  W  L+
Sbjct: 409 RSTVSWTALI 418



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 8/231 (3%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +  +G      + FT++R   A+      +FA ++       +L  GKQLHA  I  
Sbjct: 418 ISGYVQKGLHGAGLKLFTKMR--GANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRS 475

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G  +N      LV  YA      +A  + E    R  + WN LIS Y  +G    A+  +
Sbjct: 476 GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAF 535

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN--ALVSMYGK 221
            +M    ++ D+ +   VL AC     V+ G      +   +  +    +   ++ + G+
Sbjct: 536 TKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGR 595

Query: 222 FGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQE 268
            G+   A +L D+M  E D + W+++++A   Y ++ L + A +    M++
Sbjct: 596 NGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEK 646


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 180/518 (34%), Positives = 292/518 (56%), Gaps = 39/518 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y  +L  C  +  +  GR +H+ I +   E  L + N +++MY K G ++ A+ LFDKM 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            +D VSW  +IS Y+  G   EA  LF +M   G + N  T                   
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFT------------------- 208

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                      L S+    G G   H      G+++H  +++  Y    +V ++L+ MY+
Sbjct: 209 -----------LSSLLKASGTGPSDH-----HGRQLHAFSLKYGYDMNVHVGSSLLDMYA 252

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           R   +R A ++F   A K++++WN++++G+      E    LF +M R G EP + T +S
Sbjct: 253 RWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSS 312

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L  CA   +L+ GK  H ++++         + N+L++MYA+SG + +AK VF  + ++
Sbjct: 313 VLA-CASSGSLEQGKWVHAHVIKSGG-QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQ 370

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D V++ S+I+GY   G G  AL+LFE+M K +++P+ +T ++VL+ACSHSGL+ EGQ  F
Sbjct: 371 DIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYF 430

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           E M   + I  Q+ H   +VDL GRAG LN+A + I +MP  PT+A+W  LLGAC++H+N
Sbjct: 431 ELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKN 489

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             +G +AAE++ E  P +SG +VL++N+YA+ G     AKVR  M++ GV+K P C+WV+
Sbjct: 490 MDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVE 549

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             N    F+ +D S+   +EI  +   ++  +K+ GYV
Sbjct: 550 IENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYV 587



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 191/398 (47%), Gaps = 38/398 (9%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           ++ ++  C  ++ L QG+ +HA   +   E + VL+  ++  YA       A  L +   
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            +  + W +LIS Y + G  +EAL ++ +M     + + FT  S+LKA G       GR 
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQ 227

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H+  +   ++ ++ V ++L+ MY ++  +  A+ +F+ +  ++ VSWN +I+ +A KG 
Sbjct: 228 LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE 287

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
            +   +LF +M  +G E    T++++                                  
Sbjct: 288 GEHVMRLFXQMLRQGFEPTHFTYSSVL--------------------------------- 314

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
              AC+  G+L+ GK +H   ++        + N LI MY++   ++ A  +F+   ++ 
Sbjct: 315 ---ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQD 371

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           I++WNS++SGY       E+  LF +M ++ V+PN +T  S+L  C+    L  G +++ 
Sbjct: 372 IVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEG-QYYF 430

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
            ++++      +    ++V++  R+G++ EA    + M
Sbjct: 431 ELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEM 468



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 2/171 (1%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP 140
           +  C    +L QGK +HA  I  G +    +   L+  YA      +A  +      +  
Sbjct: 313 VLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDI 372

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + WN +IS Y + G  AEAL +++QM   +++ +  T+ SVL AC     +D G+     
Sbjct: 373 VSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFEL 432

Query: 201 IDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
           +     E  +  H  +V + G+ G+++ A +  ++M ++  A  W  ++ A
Sbjct: 433 MKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGA 483


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 220/670 (32%), Positives = 336/670 (50%), Gaps = 69/670 (10%)

Query: 59  AFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQ--GKQLHACAIALG-LEKNPVLVP-- 113
           A   +R   A H+V   +   ++  C  +       G++ HA A+  G L+K     P  
Sbjct: 137 ALDALRDMLADHEVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFN 196

Query: 114 KLVTFYASFSLYNNA--CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
            L++ YA   L ++A   F    + +   + WN +ISL V+ G   EA+ V   M +  +
Sbjct: 197 ALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGV 256

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVAR 229
           R D  T+ S L AC  +  +  GR VH+ +  D     + FV +ALV MY    QV  AR
Sbjct: 257 RPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHAR 316

Query: 230 RLFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           R+FD + E  R    WN MI  YA  G           M EE +E               
Sbjct: 317 RVFDMVPEHGRQLGMWNAMICGYAQHG----------GMDEEAIE--------------- 351

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                    L SRM  +     S  T+ G L AC+        + +HG  V+        
Sbjct: 352 ---------LFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRF 402

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM---- 402
           V+NAL+ MY+R   +  A+ +F M   + I++WN++++G        E+  L REM    
Sbjct: 403 VQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPS 462

Query: 403 -FRSG---------------VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
              SG                 PN +T+ ++LP CA +A    GKE H Y +R A+ ++ 
Sbjct: 463 SAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESD- 521

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           L + ++LV+MYA+ G +  A++VFD + RR+ +T+  LI  YG+ G G  AL LF+ M  
Sbjct: 522 LAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVA 581

Query: 507 N-QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           N +  P+ VT +A L+ACSHSGLV  G + F+ M   YG  P     AC+VD+ GRAG L
Sbjct: 582 NGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRL 641

Query: 566 NKAKEIITKM-PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           ++A  II+ M P     + W+T+LGAC++HRN  +G  AAE+L E  P+ + +YVL+ N+
Sbjct: 642 DEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNI 701

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           Y+A G W+   +VR  MR  GV K PGC+W++       F+  ++++ ++ +++  +  L
Sbjct: 702 YSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDAL 761

Query: 685 TELMKDAGYV 694
            E M+  GYV
Sbjct: 762 WERMRREGYV 771



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 193/443 (43%), Gaps = 66/443 (14%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           D+F  P  +K+   + D    R +H         H  +  V NAL++ Y + G +D A  
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 231 LFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           LF       RDAVS+N++ISA      W  A     +M  +  EV+  T  ++       
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSV------- 158

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG--ALKLGKEIHGSAVRGCYGEYEN 346
                                       L ACSH+     +LG+E H  A++  + +   
Sbjct: 159 ----------------------------LLACSHLADQGHRLGREAHAFALKHGFLDKGR 190

Query: 347 VR---NALITMYSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFRE 401
            R   NAL++MY+R   +  A  LF  +      ++TWN+M+S        EE+  +  +
Sbjct: 191 ERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYD 250

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   GV P+ VT AS LP C+R+  L  G+E H ++L+      +  + ++LV+MYA + 
Sbjct: 251 MVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNE 310

Query: 462 KVPEAKSVFDLMSR--RDEVTYTSLIAGYGIQGE-GRVALKLFEEMNKNQ-IKPDHVTMV 517
           +V  A+ VFD++    R    + ++I GY   G     A++LF  M       P   TM 
Sbjct: 311 QVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMA 370

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEI 571
            VL AC+ S       + F    +++G   + +  +       ++D+Y R G +++A  I
Sbjct: 371 GVLPACARS-------EVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTI 423

Query: 572 ITKMPYTPTSAMWATLLGACQIH 594
              +      + W TL+  C + 
Sbjct: 424 FAMIDLRDIVS-WNTLITGCIVQ 445



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 150/335 (44%), Gaps = 36/335 (10%)

Query: 330 KEIHGSAVRGC--YGEYENVRNALITMYSRCKDLRHAYILFKMTAE--KSIITWNSMLSG 385
           + IHG+++R    +     V NAL+T Y+RC DL  A  LF  T    +  +++NS++S 
Sbjct: 68  RAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISA 127

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH--GKEFHCYILRRAMF 443
                    +    R+M  +  E +  T+ S+L  C+ +A+  H  G+E H + L+    
Sbjct: 128 LCLFRRWGHALDALRDML-ADHEVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFL 186

Query: 444 NE--HLLLWNSLVEMYARSGKVPEAKSVF--DLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
           ++      +N+L+ MYAR G V +A+ +F        D VT+ ++I+     G    A++
Sbjct: 187 DKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQ 246

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           +  +M    ++PD VT  + L ACS   L+  G++    +     +       + +VD+Y
Sbjct: 247 VLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMY 306

Query: 560 GRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
                ++ A+ +   +P +     MW  ++  C   ++ G+ E A E             
Sbjct: 307 ASNEQVSHARRVFDMVPEHGRQLGMWNAMI--CGYAQHGGMDEEAIE------------- 351

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
            L + M A  GC    A   T M  +    +P CA
Sbjct: 352 -LFSRMEAEAGC----APSETTMAGV----LPACA 377


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 207/626 (33%), Positives = 322/626 (51%), Gaps = 51/626 (8%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           D F  ++  C  +K L   KQ+HA  +   + K    + K+        L + A   V  
Sbjct: 33  DKFNSLLQQCLSIKQL---KQIHAQLLTNSIHKPNSFLYKIA------DLKDFAYASVFF 83

Query: 135 SNIRYPLPW--NLLI-SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
           SNI  P  +  N++I  L       + AL  Y +M+   ++ +N TYP +  AC  ++ V
Sbjct: 84  SNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAV 143

Query: 192 DFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           + GR+ H S I    +    V ++L++MY + G++  AR++FD++ ++D VSWN+MIS Y
Sbjct: 144 ENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGY 203

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           +      EA  LF EM E G + N                              E  L S
Sbjct: 204 SKMRHAGEAVGLFREMMEAGFQPN------------------------------EMSLVS 233

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           V     LGAC  +G LKLG  +    V         + +ALI MY +C DL  A  +F  
Sbjct: 234 V-----LGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDS 288

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             +K  +TWN+M++GY     +EE+  LF++M  S   P+ +T+  IL  CA +  L  G
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG 348

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K+   Y   R  F + + +  +LV+MYA+ G +  A  VF  M +++EV++ ++I+    
Sbjct: 349 KQVEIYASERG-FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAF 407

Query: 491 QGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            G+ + AL LF+ M      + P+ +T V VLSAC H+GLV EG++ F  M+S +G+ P+
Sbjct: 408 HGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPK 467

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH++CMVDL+ RAG L +A + +  MP  P   +   LLGACQ  +N  I E   + LL
Sbjct: 468 IEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLL 527

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P NSG YV+ + +YA    WD  A++R  M+  GV K PGC+W+D  +    F   D
Sbjct: 528 ELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGD 587

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYV 694
             + +  EI+ +L  L + ++  GY+
Sbjct: 588 VLHQEWIEIHQILDLLIDDLRREGYI 613


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 192/611 (31%), Positives = 317/611 (51%), Gaps = 50/611 (8%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN +IS  V++G+  +AL ++ +M       +  T  S+L AC  +  +  G+ +H  I 
Sbjct: 322 WNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHX-IA 380

Query: 203 ACHE--WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
             H    +++V  +++ MY K G  D A ++F K   ++   WN MI+AY ++G  ++A 
Sbjct: 381 XKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDAL 440

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM------------------- 301
            L   MQ++G + +VIT+NTI  G  R G      ELLS M                   
Sbjct: 441 GLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGF 500

Query: 302 -------------RTQETYLD--------------SVATVIG-LGACSHVGALKLGKEIH 333
                        R  ++  D              +  T+ G L AC+ +     GKEIH
Sbjct: 501 QQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIH 560

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G  +R  +     V +AL+ MY++C D+  A  +F     ++ ++WN++++GY +    E
Sbjct: 561 GYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPE 620

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LF EM   G++P+ +T   + P C  +A ++ G+  H Y  +  +      + ++L
Sbjct: 621 EALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSAL 680

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MYA+ G + +AKSVFD    +D   + ++I+ + + G  R A  +F +M    I PDH
Sbjct: 681 IDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXPDH 740

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           +T V++LSAC+  GLV EG K F  M   YG+   LEH+ CMV + G AGLL++A + I 
Sbjct: 741 ITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIR 800

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
           +MPY P + MWATLL AC++H N  IGE AA+ L E  P+N+  Y+L++N+Y ++G WD 
Sbjct: 801 QMPYPPDACMWATLLQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSSGMWDF 860

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
              +R+ MR   +  I  C+++  G+    F   ++S+ + +EI      L   M+ +GY
Sbjct: 861 AKNLRSFMRGRKLLTIKECSYLTVGSHXCTFKGGESSHPELEEILETWDXLARKMELSGY 920

Query: 694 VVKEEFCSEEE 704
              +    +EE
Sbjct: 921 FPLDPVFDDEE 931



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 149/584 (25%), Positives = 253/584 (43%), Gaps = 104/584 (17%)

Query: 65  ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL-GLEKNPVLVPKLVTFYA--S 121
           +T +S   + DS + +  C      L++ +Q+HA  + L  L+    +  KLV  Y    
Sbjct: 75  LTNSSPTEISDSISLLNRC----STLSEFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQ 130

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
           +SL +    L E  N   P  +  LI  Y R   + E    ++ M    +  D +  P++
Sbjct: 131 WSLEDARKLLDEIPNRTVP-AYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTI 189

Query: 182 LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           LKAC  M+    G++VH   I    E  +FV NAL+  Y   G +  +R +F  M ERD 
Sbjct: 190 LKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDV 249

Query: 241 VSWNTMISAYASKGLWKEAFQLF-----------------------------------VE 265
           VSW  +ISAY  +GL  EA  +F                                    E
Sbjct: 250 VSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEE 309

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIGLGACSHV 323
           M E G++  V +WN I  GC++ G  +  L++ SRM    ++  + ++A++  L AC+ +
Sbjct: 310 MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASI--LPACTGL 367

Query: 324 GALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            AL+LGK IH  A + G  G    V  ++I MYS+C    +A  +F     K+   WN M
Sbjct: 368 KALRLGKAIHXIAXKHGIVGNVY-VEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEM 426

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++ Y +    E++  L R M + G +P+ +T                             
Sbjct: 427 IAAYVNEGKVEDALGLLRSMQKDGWKPDVIT----------------------------- 457

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS----RRDEVTYTSLIAGYGIQGEGRVAL 498
                  +N+++  +AR+G   +A  +   M     + + V++  LI+G+   G    AL
Sbjct: 458 -------YNTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEAL 510

Query: 499 KLFEEM-------NKNQI-----KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           K+F  M       N N++     +P+ +T+   L AC+   L  +G K+    T   G  
Sbjct: 511 KVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQG-KEIHGYTLRNGFE 569

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           P +   + +VD+Y +   ++ A ++  ++    T + W  L+  
Sbjct: 570 PNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVS-WNALMAG 612



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 2/208 (0%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  +    QGK++H   +  G E N  +   LV  YA     ++A  +    + R  + W
Sbjct: 547 CADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSW 606

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N L++ Y+ +    EAL ++ +M    ++  + T+  +  ACG++  + FGR +H     
Sbjct: 607 NALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAK 666

Query: 204 CH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           C   E    + +AL+ MY K G +  A+ +FD  +E+D   WN MISA++  G+ + AF 
Sbjct: 667 CQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFA 726

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +F +M+  G+  + IT+ ++   C R G
Sbjct: 727 VFXQMELLGIXPDHITFVSLLSACARDG 754



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 153/317 (48%), Gaps = 14/317 (4%)

Query: 330 KEIHGSAVRGCYGEYEN-VRNALITMYSRCKD---LRHAYILFKMTAEKSIITWNSMLSG 385
           ++IH   V+    ++++ + N L+ +Y  CK+   L  A  L      +++  + +++  
Sbjct: 100 RQIHARVVKLNALKWKSSIGNKLVVLY--CKNQWSLEDARKLLDEIPNRTVPAYAALIRS 157

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           Y   +  +E    FR M   G+ P+   + +IL  C+ +   + GK  H +++R+++ ++
Sbjct: 158 YCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESD 217

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
            + + N+L+  Y+  G +  ++SVF  M  RD V++T+LI+ Y  +G    A  +F  M 
Sbjct: 218 -VFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQ 276

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
            + +KPD ++  A+LS  + +G +    +  E M    G+ P +  +  ++    + G L
Sbjct: 277 LDGVKPDLISWSALLSGFARNGEIDLALETLEEMPE-RGLQPTVNSWNGIISGCVQNGYL 335

Query: 566 NKAKEIITKM---PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV--L 620
             A ++ ++M   P  P     A++L AC   +   +G+ A   +          YV   
Sbjct: 336 EDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGK-AIHXIAXKHGIVGNVYVEGS 394

Query: 621 IANMYAATGCWDKLAKV 637
           + +MY+  G +D   KV
Sbjct: 395 VIDMYSKCGSYDYAEKV 411



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 114/266 (42%), Gaps = 15/266 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEK-NPVLVPKLVTFYASFSLYNNACFLVEN 134
           +F  +   CG + A+  G+ LH  A    L++    +   L+  YA      +A   V +
Sbjct: 640 TFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKS-VFD 698

Query: 135 SNIRYPLP-WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           S +   +P WN +IS +   G    A  V+ QM+   I  D+ T+ S+L AC     V+ 
Sbjct: 699 SEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVEE 758

Query: 194 GRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
           G    + ++  +    +L  +  +V + G  G +D A     +M    DA  W T++ A 
Sbjct: 759 GWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQAC 818

Query: 250 --YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
             +++  + + A +   E++ +    N   +  ++   + +G +     L S MR ++  
Sbjct: 819 RVHSNPEIGERAAKALFELEPD----NATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLL 874

Query: 308 LDSVATVIGLGACSHVGALKLGKEIH 333
                + + +G  SH    K G+  H
Sbjct: 875 TIKECSYLTVG--SHXCTFKGGESSH 898


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 196/558 (35%), Positives = 295/558 (52%), Gaps = 28/558 (5%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV--VH 198
           + WN ++S Y ++GF  EA  V+ +M  R    ++ ++  +L A      V  GR+    
Sbjct: 140 VSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAY-----VHNGRLKEAR 190

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
              ++   W L   N L+  Y K   +  AR+LFD+M  RD +SWNTMIS YA  G   +
Sbjct: 191 RLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQ 250

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIG 316
           A +LF     E    +V TW  +  G ++ G      +    M  + + +Y   +A    
Sbjct: 251 AKRLF----NESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLA---- 302

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
            G   +   +  G+       R       +  N +IT Y +   +  A  LF M  ++  
Sbjct: 303 -GYVQYKKMVIAGELFEAMPCRNI-----SSWNTMITGYGQNGGIAQARKLFDMMPQRDC 356

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W +++SGY      EE+  +F EM R G   N  T +  L  CA +A L+ GK+ H  
Sbjct: 357 VSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQ 416

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           +++ A F     + N+L+ MY + G   EA  VF+ +  +D V++ ++IAGY   G GR 
Sbjct: 417 VVK-AGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQ 475

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           AL LFE M K  +KPD +TMV VLSACSHSGL+  G + F  M   Y + P  +H+ CM+
Sbjct: 476 ALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMI 535

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GRAG L +A+ ++  MP+ P +A W  LLGA +IH NT +GE AAE + +  P+NSG
Sbjct: 536 DLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSG 595

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YVL++N+YAA+G W  + K+R+ MR+ GV+K+ G +WV+  N    F V D  + +   
Sbjct: 596 MYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDR 655

Query: 677 IYPLLGGLTELMKDAGYV 694
           IY  L  L   M+  GYV
Sbjct: 656 IYAFLEELDLKMRREGYV 673



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 188/417 (45%), Gaps = 63/417 (15%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           +++ YA     + A  L   S IR    W  ++S YV++G   EA   + +M  +    +
Sbjct: 238 MISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK----N 293

Query: 175 NFTYPSVLKA---------CGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
             +Y ++L            GE+ +    R + S       W     N +++ YG+ G +
Sbjct: 294 EISYNAMLAGYVQYKKMVIAGELFEAMPCRNISS-------W-----NTMITGYGQNGGI 341

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR+LFD M +RD VSW  +IS YA  G ++EA  +FVEM+ +G   N  T++      
Sbjct: 342 AQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSC----- 396

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          L  C+ + AL+LGK++HG  V+  +    
Sbjct: 397 ------------------------------ALSTCADIAALELGKQVHGQVVKAGFETGC 426

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NAL+ MY +C     A  +F+   EK +++WN+M++GY       ++  LF  M ++
Sbjct: 427 FVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKA 486

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           GV+P+ +T+  +L  C+    +  G E+   + R          +  ++++  R+G++ E
Sbjct: 487 GVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEE 546

Query: 466 AKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           A+++   M       ++ +L+    I G   +  K  E + K  ++P +  M  +LS
Sbjct: 547 AENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFK--MEPQNSGMYVLLS 601



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 134/313 (42%), Gaps = 47/313 (15%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF--------- 399
           NA+I+ Y R      A  LF    E+ + +WN ML+GY       E+  LF         
Sbjct: 81  NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV 140

Query: 400 ------------------REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
                             RE+F      N ++   +L      A + +G+      L  +
Sbjct: 141 SWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLL-----AAYVHNGRLKEARRLFES 195

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
             N  L+ WN L+  Y +   + +A+ +FD M  RD +++ ++I+GY   G+   A +LF
Sbjct: 196 QSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF 255

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
              N++ I+ D  T  A++S    +G+V E +K F+ M     I      +  M+  Y +
Sbjct: 256 ---NESPIR-DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEI-----SYNAMLAGYVQ 306

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY-YVL 620
              +  A E+   MP    S+ W T++      +N GI +  A KL +  P+     +  
Sbjct: 307 YKKMVIAGELFEAMPCRNISS-WNTMITG--YGQNGGIAQ--ARKLFDMMPQRDCVSWAA 361

Query: 621 IANMYAATGCWDK 633
           I + YA  G +++
Sbjct: 362 IISGYAQNGHYEE 374



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 118/265 (44%), Gaps = 12/265 (4%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G+  +A   F  ++    S +    +F+  +  C  + AL  GKQ+H   +  
Sbjct: 363 ISGYAQNGHYEEALNMFVEMKRDGESSN--RSTFSCALSTCADIAALELGKQVHGQVVKA 420

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G E    +   L+  Y      + A  + E    +  + WN +I+ Y R GF  +AL ++
Sbjct: 421 GFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLF 480

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGK 221
           + M+   ++ D  T   VL AC     +D G      +D  +  + +   +  ++ + G+
Sbjct: 481 ESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGR 540

Query: 222 FGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVIT 277
            G+++ A  L   M  +  A SW  ++ A   + +  L ++A ++  +M+ +   + V+ 
Sbjct: 541 AGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 600

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMR 302
            N  A     +G +  V ++ S+MR
Sbjct: 601 SNLYAA----SGRWVDVGKMRSKMR 621



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 110/223 (49%), Gaps = 22/223 (9%)

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +  I+TWN  +S +      + +  +F  M R     + V+  +++    R A     ++
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRR----SSVSYNAMISGYLRNAKFSLARD 98

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
               +  R +F+     WN ++  Y R+ ++ EA  +FDLM ++D V++ ++++GY   G
Sbjct: 99  LFDKMPERDLFS-----WNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNG 153

Query: 493 EGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
               A ++F +M ++N I  +      +L+A  H+G + E ++ FE  ++      +L  
Sbjct: 154 FVDEAREVFNKMPHRNSISWN-----GLLAAYVHNGRLKEARRLFESQSNW-----ELIS 203

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL-GACQI 593
           + C++  Y +  +L  A+++  +MP     + W T++ G  Q+
Sbjct: 204 WNCLMGGYVKRNMLGDARQLFDRMPVRDVIS-WNTMISGYAQV 245



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 18/244 (7%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N  I+ + R      A  +F     +S +++N+M+SGY  L  A+ S  L R++F    E
Sbjct: 50  NKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGY--LRNAKFS--LARDLFDKMPE 105

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            +  +   +  L   V N + G+    + L   M  + ++ WN+++  YA++G V EA+ 
Sbjct: 106 RDLFSWNVM--LTGYVRNRRLGEAHKLFDL---MPKKDVVSWNAMLSGYAQNGFVDEARE 160

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VF+ M  R+ +++  L+A Y   G  + A +LFE  +  ++    ++   ++       +
Sbjct: 161 VFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWEL----ISWNCLMGGYVKRNM 216

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           + + ++ F+RM         +  +  M+  Y + G L++AK +  + P        A + 
Sbjct: 217 LGDARQLFDRMP-----VRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVS 271

Query: 589 GACQ 592
           G  Q
Sbjct: 272 GYVQ 275


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 305/558 (54%), Gaps = 41/558 (7%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + +N LIS Y   G  A AL ++  M+   +  D FT  +V+ AC +  DV     +HS 
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCD--DVGLIGQLHSV 163

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKE 258
            + +  +  + V+NAL++ YGK G +D A+R+F  M   RD VSWN+MI AY       +
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSK 223

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  LF EM   G+ V++ T                                 +A+V+   
Sbjct: 224 ALGLFQEMVRRGLNVDMFT---------------------------------LASVLTAF 250

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD-LRHAYILFKMTAEKSII 377
            C  +  L  G + HG  ++  + +  +V + LI +YS+C   +     +F+   E  ++
Sbjct: 251 TC--LEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 378 TWNSMLSGYTHLDCAEESAF-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
            WN+M+SGY+  +   E A   FR+M   G  PN  +   ++  C+ +++   GK+ H  
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            L+  + +  + + N+L+ MY++ G + +A+ +FD M+  + V+  S+IAGY   G    
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           +L LF+ M + QI P  +T ++VLSAC+H+G V EG   F  M   + I P+ EH++CM+
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMI 488

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GRAG L++A+ +I +MP+ P S  WA+LLGAC+ H N  +   AA ++L+  P N+ 
Sbjct: 489 DLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAA 548

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YV+++NMYA+ G W+++A VR  MRD GV+K PGC+W++       F+ +D+S+   +E
Sbjct: 549 PYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKE 608

Query: 677 IYPLLGGLTELMKDAGYV 694
           IY  L  ++  MK AGYV
Sbjct: 609 IYEFLEEMSGKMKRAGYV 626



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 207/422 (49%), Gaps = 17/422 (4%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           +  +LK C    D+  G+ +HS  I +    S +  N  + +Y K G++  AR+ F  + 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           + +  S+N +I+AYA +     A QLF ++ E     +++++NT+       G     L 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEP----DLVSYNTLISAYADCGETAPALG 126

Query: 297 LLSRMRTQETYLDSVA-TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           L S MR     +D    + +    C  VG +    ++H  AV   +  Y +V NAL+T Y
Sbjct: 127 LFSGMREMGLDMDGFTLSAVITACCDDVGLI---GQLHSVAVSSGFDSYVSVNNALLTYY 183

Query: 356 SRCKDLRHA-YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
            +  DL  A  + + M   +  ++WNSM+  Y       ++  LF+EM R G+  +  T+
Sbjct: 184 GKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTL 243

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-SGKVPEAKSVFDLM 473
           AS+L     + +L  G +FH  +++   F+++  + + L+++Y++  G + + + VF+ +
Sbjct: 244 ASVLTAFTCLEDLSGGLQFHGQLIKTG-FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI 302

Query: 474 SRRDEVTYTSLIAGYGIQGEG-RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           +  D V + ++++GY    E    AL+ F +M     +P+  + V V+SACS+     +G
Sbjct: 303 TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG 362

Query: 533 QKQFERMTSIYGIFP--QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            KQ   + ++    P  ++     ++ +Y + G L  A+ +  +M    T ++ + + G 
Sbjct: 363 -KQIHSL-ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGY 420

Query: 591 CQ 592
            Q
Sbjct: 421 AQ 422



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 219/486 (45%), Gaps = 57/486 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G  + A   F+ +R      D    S A I  CC  V  + Q   LH+ A++ G +
Sbjct: 115 YADCGETAPALGLFSGMREMGLDMDGFTLS-AVITACCDDVGLIGQ---LHSVAVSSGFD 170

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
               +   L+T+Y      ++A  +      IR  + WN +I  Y +    ++AL ++++
Sbjct: 171 SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQE 230

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKF-G 223
           M  R +  D FT  SVL A   + D+  G   H   I      +  V + L+ +Y K  G
Sbjct: 231 MVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGG 290

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYA-SKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            +   R++F+++ E D V WNTM+S Y+ ++   ++A + F +MQ  G   N  ++    
Sbjct: 291 GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSF---- 346

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                          V  + ACS++ +   GK+IH  A++    
Sbjct: 347 -------------------------------VCVISACSNLSSPSQGKQIHSLALKSDIP 375

Query: 343 EYE-NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               +V NALI MYS+C +L+ A  LF   AE + ++ NSM++GY       ES  LF+ 
Sbjct: 376 SNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQW 435

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN-----EHLLLWNSLVEM 456
           M    + P  +T  S+L  CA    ++ G  +  + + +  FN     EH   ++ ++++
Sbjct: 436 MLERQIAPTSITFISVLSACAHTGRVEEGWNY--FNMMKEKFNIEPEAEH---YSCMIDL 490

Query: 457 YARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
             R+GK+ EA+++   M      + + SL+      G   +A+K   ++   Q++P +  
Sbjct: 491 LGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQV--LQLEPSNAA 548

Query: 516 MVAVLS 521
              VLS
Sbjct: 549 PYVVLS 554


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 198/610 (32%), Positives = 321/610 (52%), Gaps = 54/610 (8%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSL----YNNACFLVENSNIRYPLP----WNL 145
            Q+HA  +  GL ++  LV K V   AS+++    Y    F        +P P    WN 
Sbjct: 88  NQIHAQLVVSGLVESGFLVTKFVN--ASWNIGEIGYARKVF------DEFPEPSVFLWNA 139

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DAC 204
           +I  Y    F+ +A+ +Y +MQ+  +  D FT P VLKAC  +  ++ G+ VH  I    
Sbjct: 140 IIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLG 199

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            E  +FV N LV++Y K G+V+ AR +F+ + +R                          
Sbjct: 200 FESDVFVQNGLVALYAKCGRVEQARIVFEGLDDR-------------------------- 233

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
                    N+++W ++  G  + G     L +  +MR +    D +A V  L A + V 
Sbjct: 234 ---------NIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVE 284

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            L+ GK IHG  V+       ++  +L  MY++C  +  A   F      +++ WN+M+S
Sbjct: 285 DLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMIS 344

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY       E+  LF+EM    +  + +T+ S +  CA+V +L   K    YI  +  + 
Sbjct: 345 GYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYI-NKTEYR 403

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             + +  +L++M+A+ G V  A+ VFD    +D V ++++I GYG+ G G+ A+ LF  M
Sbjct: 404 NDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAM 463

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            +  + P+ VT V +L+AC+HSGLV EG + F  M   YGI  + +H+AC+VDL GR+G 
Sbjct: 464 KQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGH 522

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           LN+A + IT MP  P  ++W  LLGAC+I+R+  +GE+AAE+L    P N+G+YV ++N+
Sbjct: 523 LNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNL 582

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA++  WD +AKVR  MR+ G+ K  G + ++       F V D S+ + +EI+  L  L
Sbjct: 583 YASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESL 642

Query: 685 TELMKDAGYV 694
              +K+AG++
Sbjct: 643 ERRLKEAGFI 652



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 191/434 (44%), Gaps = 45/434 (10%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ ++       A E ++R++ +  + D    +   ++  C  V  L  GK++H     L
Sbjct: 141 IRGYSSHNFFGDAIEMYSRMQASGVNPDGF--TLPCVLKACSGVPVLEVGKRVHGQIFRL 198

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G E +  +   LV  YA       A  + E  + R  + W  +IS Y ++G   EAL ++
Sbjct: 199 GFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIF 258

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC---HEWSLFVHNALVSMYG 220
            QM+ R ++ D     SVL+A  ++ D++ G+ +H C+       E  L +  +L +MY 
Sbjct: 259 GQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLI--SLTAMYA 316

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K GQV VAR  FD+M   + + WN MIS YA  G   EA  LF EM  + +         
Sbjct: 317 KCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRT------- 369

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                                       DS+     + AC+ VG+L L K +     +  
Sbjct: 370 ----------------------------DSITVRSAILACAQVGSLDLAKWMGDYINKTE 401

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           Y     V  ALI M+++C  +  A  +F  T +K ++ W++M+ GY      +++  LF 
Sbjct: 402 YRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFY 461

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKE-FHCYILRRAMFNEHLLLWNSLVEMYAR 459
            M ++GV PN VT   +L  C     ++ G E FH   ++          +  +V++  R
Sbjct: 462 AMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHS--MKYYGIEARHQHYACVVDLLGR 519

Query: 460 SGKVPEAKSVFDLM 473
           SG + EA      M
Sbjct: 520 SGHLNEAYDFITTM 533


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 197/653 (30%), Positives = 331/653 (50%), Gaps = 40/653 (6%)

Query: 51   GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGK----VKALAQGKQLHACAIALGLE 106
            G  +K  E    + +    H++ +    H I C  K    +     G   H   + LG  
Sbjct: 390  GGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFG 449

Query: 107  KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
                +   L++FYA  ++  +A  +      +  + WN +IS    +G  +EA+ ++ +M
Sbjct: 450  AQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRM 509

Query: 167  QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
             ++    D+ T  SVL AC +      GRVVH        +S+          G  G+  
Sbjct: 510  WTQGQELDSVTLLSVLPACAQSRYWFAGRVVHG-------YSVKT--------GLIGETS 554

Query: 227  VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            +A               N ++  Y++   W+   Q+F  M ++    NV++W  +    +
Sbjct: 555  LA---------------NALLDMYSNCSDWQSTNQIFRSMGQK----NVVSWTAMITSYM 595

Query: 287  RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
            R G F  V  LL  M       D  A    L A +   +LK GK +HG  +R    +   
Sbjct: 596  RAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLP 655

Query: 347  VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
            V NAL+ MY +C+++  A ++F     K +I+WN+++ GY+  +   ES  LF +M    
Sbjct: 656  VANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ- 714

Query: 407  VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
              PN VT+  ILP  A +++L+ G+E H Y LRR  F E     N+LV+MY + G +  A
Sbjct: 715  FRPNAVTMTCILPAAASISSLERGREIHAYALRRG-FLEDSYASNALVDMYVKCGALLVA 773

Query: 467  KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
            + +FD +++++ +++T +IAGYG+ G G+ A+ LFE+M  + I+PD  +  A+L AC HS
Sbjct: 774  RVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHS 833

Query: 527  GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
            GL  EG++ F+ M   Y I P+L+H+ C+VDL  R G L +A E I  MP  P S++W +
Sbjct: 834  GLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVS 893

Query: 587  LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
            LL  C+IH+N  + E  A+K+ +  PEN+GYYVL+AN+YA    W+ + K++  +   G+
Sbjct: 894  LLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGL 953

Query: 647  RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            R+  G +W++  +    F+ D+ ++     I   L  +   M+  G+  K+++
Sbjct: 954  RENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKY 1006



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 147/544 (27%), Positives = 251/544 (46%), Gaps = 87/544 (15%)

Query: 23  PKKW--KQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHI 80
           P  W  K P +      +NL   ++     G+L+ A      +R+  +   V + S+  +
Sbjct: 52  PSSWSTKNPPSRALSSDVNL--RIQRLCQAGDLAGA------LRLLGSDGGVDVRSYCMV 103

Query: 81  IFCCGKVKALAQGKQLHA-----CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN- 134
           +  CG+ ++L   K+ HA      A A G  K  VL  +LV  Y        A  + +  
Sbjct: 104 VQLCGEERSLEAAKRAHALIRASSAAATG-GKGSVLGKRLVLAYLKCGDLGEARTVFDGM 162

Query: 135 ----SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
               +++R    W  L+S Y + G + EA+ +++QMQ   +  D      VLK    +  
Sbjct: 163 PPQAADVRV---WTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGS 219

Query: 191 VDFGRVVHSCID------ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
           +  G V+H  ++      AC      V NAL+++Y + G+++ A R+FD M  RDA+SWN
Sbjct: 220 LTEGEVIHGLLEKLGLGQACA-----VANALIAVYSRCGRMEDAARVFDSMHPRDAISWN 274

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           +MI    S G    A  LF +M  +G E++ +T                VL +L      
Sbjct: 275 SMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVT----------------VLSVLP----- 313

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNA---------LITM 354
                         AC+ +G   +GK +HG +V+ G     ++V++          L+ M
Sbjct: 314 --------------ACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFM 359

Query: 355 YSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           Y +C D+  A  +F  M+++ ++  WN ++ GY  +   EES  LF +M   G+ P+   
Sbjct: 360 YVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHA 419

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           I+ +L     ++  + G   H YI++   F     + N+L+  YA+S  + +A  VF+ M
Sbjct: 420 ISCLLKCITCLSCARDGLVAHGYIVKLG-FGAQCAVCNALISFYAKSNMIGDAVLVFNRM 478

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS-----GL 528
            R+D +++ S+I+G    G    A++LF  M     + D VT+++VL AC+ S     G 
Sbjct: 479 PRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGR 538

Query: 529 VVEG 532
           VV G
Sbjct: 539 VVHG 542



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 140/583 (24%), Positives = 250/583 (42%), Gaps = 55/583 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G+  +A   F +++    S D    + + ++ C   + +L +G+ +H     L
Sbjct: 176 MSAYAKAGDFQEAVSLFRQMQCCGVSPDA--HAVSCVLKCVSSLGSLTEGEVIHGLLEKL 233

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL +   +   L+  Y+      +A  + ++ + R  + WN +I     +G++  A+ ++
Sbjct: 234 GLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLF 293

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSL----------FVH 212
            +M S+     + T  SVL AC  +     G+ VH   + +   W L           + 
Sbjct: 294 SKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALG 353

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           + LV MY K G +  ARR+FD M               +SKG                  
Sbjct: 354 SKLVFMYVKCGDMASARRVFDAM---------------SSKG------------------ 380

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            NV  WN I GG  + G F+  L L  +M       D  A    L   + +   + G   
Sbjct: 381 -NVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVA 439

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           HG  V+  +G    V NALI+ Y++   +  A ++F     +  I+WNS++SG +     
Sbjct: 440 HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLN 499

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
            E+  LF  M+  G E + VT+ S+LP CA+      G+  H Y ++  +  E  L  N+
Sbjct: 500 SEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLA-NA 558

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L++MY+          +F  M +++ V++T++I  Y   G       L +EM  + I+PD
Sbjct: 559 LLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPD 618

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
              + + L A +    + +G K     T   G+   L     ++++Y +   + +A+ I 
Sbjct: 619 VFAVTSALHAFAGDESLKQG-KSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIF 677

Query: 573 TKMPYTPTSAMWATLLGACQIHRNTGIGE---WAAEKLLETRP 612
            ++      + W TL+G     RN    E     ++ LL+ RP
Sbjct: 678 DRVTNKDVIS-WNTLIGG--YSRNNFPNESFSLFSDMLLQFRP 717



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 161/362 (44%), Gaps = 24/362 (6%)

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           ++ AY   G   EA  +F  M  +  +V V  W ++     + G+F+  + L  +M+   
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRV--WTSLMSAYAKAGDFQEAVSLFRQMQCCG 199

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
              D+ A    L   S +G+L  G+ IHG   +   G+   V NALI +YSRC  +  A 
Sbjct: 200 VSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAA 259

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F     +  I+WNSM+ G         +  LF +M+  G E + VT+ S+LP CA + 
Sbjct: 260 RVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLG 319

Query: 426 NLQHGKEFHCYILRRAMF---------NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
               GK  H Y ++  +           +   L + LV MY + G +  A+ VFD MS +
Sbjct: 320 YGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSK 379

Query: 477 DEVTYTSLI-AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS-----ACSHSGLVV 530
             V   +LI  GY   GE   +L LF +M++  I PD   +  +L      +C+  GLV 
Sbjct: 380 GNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVA 439

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G           G   Q      ++  Y ++ ++  A  +  +MP   T + W +++  
Sbjct: 440 HG------YIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTIS-WNSVISG 492

Query: 591 CQ 592
           C 
Sbjct: 493 CS 494


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 214/669 (31%), Positives = 331/669 (49%), Gaps = 89/669 (13%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA--SFSLYNNACFLVENSNIRYPL 141
           C   K L   KQLHA  +  GL  +P    KL T  A  S S  + AC + +    + P 
Sbjct: 40  CANKKHL---KQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFD----QIPR 92

Query: 142 P----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGRV 196
           P    WN LI  +       + L V+ QM     R  N +T+P V+KA  E+  +  G+ 
Sbjct: 93  PNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQA 152

Query: 197 VHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H  +  A     LF+ N+L+  Y   G +D A  +F K+                    
Sbjct: 153 IHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKI-------------------- 192

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                          VE ++++WN++  G ++ G+ +  L+L  RM+ +    + V  V 
Sbjct: 193 ---------------VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVG 237

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L AC+    L+ G+       R        + NA++ MY +C  L  A  LF    EK 
Sbjct: 238 VLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKD 297

Query: 376 IITWNSMLSGYTHL---DCA----------------------------EESAFLFREM-F 403
           I++W +M+ GY  +   D A                            +E+  +FRE+  
Sbjct: 298 IVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQL 357

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGK 462
               +PN VT+AS L  CA++  +  G   H YI ++ +  N H+    SL++MY++ G 
Sbjct: 358 NKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHIT--TSLIDMYSKCGH 415

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + +A  VF  + RRD   ++++IAG  + G GR A+ LF +M + ++KP+ VT   +L A
Sbjct: 416 LEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCA 475

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSHSGLV EG+  F +M  +YG+ P  +H+ACMVD+ GRAG L +A E+I KMP  P+++
Sbjct: 476 CSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSAS 535

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W  LLGAC+I+ N  + E A  +LLET   N G YVL++N+YA  G WD ++++R  M+
Sbjct: 536 VWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMK 595

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKE----E 698
             G+ K PGC+ ++   +   FLV D S+  + EIY  L  +   +K  GYV  E    +
Sbjct: 596 VSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQ 655

Query: 699 FCSEEEIVE 707
           F  EE + E
Sbjct: 656 FVEEEYMKE 664



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 176/360 (48%), Gaps = 6/360 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I    +V +L  G+ +H   +      +  +   L+ FY+S    ++A  +    
Sbjct: 133 TFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKI 192

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +IS +V+ G   EAL ++K+M+    R +  T   VL AC + +D++FGR
Sbjct: 193 VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGR 252

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
                I+    + +L + NA++ MY K G ++ ARRLFDKM E+D VSW TMI  YA  G
Sbjct: 253 WACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVG 312

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR-TQETYLDSVAT 313
            +  A ++F  M  E    ++  WN +     + G  K  L +   ++  + T  + V  
Sbjct: 313 DYDAARRVFDVMPRE----DITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTL 368

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC+ +GA+ LG  IH    +       ++  +LI MYS+C  L  A  +F     
Sbjct: 369 ASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVER 428

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + +  W++M++G         +  LF +M  + V+PN VT  ++L  C+    +  G+ F
Sbjct: 429 RDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLF 488


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 305/558 (54%), Gaps = 41/558 (7%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + +N LIS Y   G  A AL ++  M+   +  D FT  +V+ AC +  DV     +HS 
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCD--DVGLIGQLHSV 163

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKE 258
            + +  +  + V+NAL++ YGK G +D A+R+F  M   RD VSWN+MI AY       +
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSK 223

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  LF EM   G+ V++ T                                 +A+V+   
Sbjct: 224 ALGLFQEMVRRGLNVDMFT---------------------------------LASVLTAF 250

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD-LRHAYILFKMTAEKSII 377
            C  +  L  G + HG  ++  + +  +V + LI +YS+C   +     +F+   E  ++
Sbjct: 251 TC--LEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 378 TWNSMLSGYTHLDCAEESAF-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
            WN+M+SGY+  +   E A   FR+M   G  PN  +   ++  C+ +++   GK+ H  
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            L+  + +  + + N+L+ MY++ G + +A+ +FD M+  + V+  S+IAGY   G    
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           +L LF+ M + QI P  +T ++VLSAC+H+G V EG   F  M   + I P+ EH++CM+
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMI 488

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GRAG L++A+ +I +MP+ P S  WA+LLGAC+ H N  +   AA ++L+  P N+ 
Sbjct: 489 DLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAA 548

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YV+++NMYA+ G W+++A VR  MRD GV+K PGC+W++       F+ +D+S+   +E
Sbjct: 549 PYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKE 608

Query: 677 IYPLLGGLTELMKDAGYV 694
           IY  L  ++  MK AGYV
Sbjct: 609 IYEFLEEMSGKMKRAGYV 626



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 207/422 (49%), Gaps = 17/422 (4%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           +  +LK C    D+  G+ +HS  I +    S +  N  + +Y K G++  AR+ F  + 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           + +  S+N +I+AYA +     A QLF ++ E     +++++NT+       G     L 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEP----DLVSYNTLISAYADCGETAPALG 126

Query: 297 LLSRMRTQETYLDSVA-TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           L S MR     +D    + +    C  VG +    ++H  AV   +  Y +V NAL+T Y
Sbjct: 127 LFSGMREMGLDMDXFTLSAVITACCDDVGLI---GQLHSVAVSSGFDSYVSVNNALLTYY 183

Query: 356 SRCKDLRHA-YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
            +  DL  A  + + M   +  ++WNSM+  Y       ++  LF+EM R G+  +  T+
Sbjct: 184 GKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTL 243

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-SGKVPEAKSVFDLM 473
           AS+L     + +L  G +FH  +++   F+++  + + L+++Y++  G + + + VF+ +
Sbjct: 244 ASVLTAFTCLEDLSGGLQFHGQLIKTG-FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI 302

Query: 474 SRRDEVTYTSLIAGYGIQGEG-RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           +  D V + ++++GY    E    AL+ F +M     +P+  + V V+SACS+     +G
Sbjct: 303 TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG 362

Query: 533 QKQFERMTSIYGIFP--QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            KQ   + ++    P  ++     ++ +Y + G L  A+ +  +M    T ++ + + G 
Sbjct: 363 -KQIHSL-ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGY 420

Query: 591 CQ 592
            Q
Sbjct: 421 AQ 422



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 219/486 (45%), Gaps = 57/486 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G  + A   F+ +R      D    S A I  CC  V  + Q   LH+ A++ G +
Sbjct: 115 YADCGETAPALGLFSGMREMGLDMDXFTLS-AVITACCDDVGLIGQ---LHSVAVSSGFD 170

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
               +   L+T+Y      ++A  +      IR  + WN +I  Y +    ++AL ++++
Sbjct: 171 SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQE 230

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKF-G 223
           M  R +  D FT  SVL A   + D+  G   H   I      +  V + L+ +Y K  G
Sbjct: 231 MVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGG 290

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYA-SKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            +   R++F+++ E D V WNTM+S Y+ ++   ++A + F +MQ  G   N  ++    
Sbjct: 291 GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSF---- 346

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                          V  + ACS++ +   GK+IH  A++    
Sbjct: 347 -------------------------------VCVISACSNLSSPSQGKQIHSLALKSDIP 375

Query: 343 EYE-NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               +V NALI MYS+C +L+ A  LF   AE + ++ NSM++GY       ES  LF+ 
Sbjct: 376 SNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQW 435

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN-----EHLLLWNSLVEM 456
           M    + P  +T  S+L  CA    ++ G  +  + + +  FN     EH   ++ ++++
Sbjct: 436 MLERQIAPTSITFISVLSACAHTGRVEEGWNY--FNMMKEKFNIEPEAEH---YSCMIDL 490

Query: 457 YARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
             R+GK+ EA+++   M      + + SL+      G   +A+K   ++   Q++P +  
Sbjct: 491 LGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQV--LQLEPSNAA 548

Query: 516 MVAVLS 521
              VLS
Sbjct: 549 PYVVLS 554


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  325 bits (834), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 211/656 (32%), Positives = 327/656 (49%), Gaps = 82/656 (12%)

Query: 79  HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA--SFSLYNNACFLVENSN 136
            I+    K  +  Q K++HA  +  GL  +P    KL T  A  SFS  + A  L +   
Sbjct: 27  QILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFD--- 83

Query: 137 IRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLKACGEMMDV 191
            + P P    WN LI  Y       ++  ++  +  +     + FT+P V+KA  E+   
Sbjct: 84  -QIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKAS 142

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G  VH   I       L++ N+LV  YG  G + +A RLF  +  +D VSWN+MISA+
Sbjct: 143 RVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAF 202

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           A                               G C      +  LEL  +M  +    +S
Sbjct: 203 AQ------------------------------GNCP-----EDALELFLKMERENVMPNS 227

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           V  V  L AC+    L+ G+ +     R        + NA++ MY++C  +  A  LF  
Sbjct: 228 VTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDE 287

Query: 371 TAEKSIITWNSMLSGYTHL---DCA----------------------------EESAFLF 399
             E+ + +W  ML GY  +   D A                            +E+  +F
Sbjct: 288 MPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIF 347

Query: 400 REMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMY 457
            E+  S + +P+ VT+ S L  CA++  +  G   H YI R  +  N HL+  +SLV+MY
Sbjct: 348 NELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLI--SSLVDMY 405

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           A+ G + +A  VF  +  RD   ++++IAG G+ G G+ A+ LF EM + ++KP+ VT  
Sbjct: 406 AKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFT 465

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
            VL ACSH+GLV EG+  F  M  +YG+ P+++H+ACMVD+ GRAG L +A E+I +M  
Sbjct: 466 NVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMST 525

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637
           TP++++W  LLGAC +H N  +GE A+++LL+  P N G  VL++N+YA TG W+K++++
Sbjct: 526 TPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSEL 585

Query: 638 RTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           R  MRD  ++K PGC+ ++A      FLV D ++  +  IY  L  +   +K  GY
Sbjct: 586 RKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGY 641



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 195/401 (48%), Gaps = 6/401 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I    ++KA   G  +H  AI L    +  ++  LV FY +    + A  L +  
Sbjct: 128 TFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGI 187

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + WN +IS + +     +AL ++ +M+   +  ++ T   VL AC + +D++FGR
Sbjct: 188 SCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGR 247

Query: 196 VVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            V S I+    +  L + NA++ MY K G VD A++LFD+M ERD  SW  M+  YA  G
Sbjct: 248 WVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMG 307

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR-TQETYLDSVAT 313
            +  A  +F  M  +     +  WN +     + G  K  L + + ++ ++    D V  
Sbjct: 308 DYDAARLVFNAMPVK----EIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTL 363

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           V  L AC+ +GA+ LG  IH    R       ++ ++L+ MY++C  L  A  +F    E
Sbjct: 364 VSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEE 423

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + +  W++M++G       + +  LF EM  + V+PN VT  ++L  C+    +  G+ F
Sbjct: 424 RDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVF 483

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
              +         +  +  +V++  R+G + EA  + + MS
Sbjct: 484 FHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMS 524


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 219/675 (32%), Positives = 338/675 (50%), Gaps = 72/675 (10%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKV---KALAQGKQLHACAIALG-LEKNPV 110
           +A +A  R  +    HDV   +   ++  C  +        G++ HA A+  G L++   
Sbjct: 151 RALDAL-RDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRE 209

Query: 111 LVP--KLVTFYASFSLYNNACFLVENSNIRYP------LPWNLLISLYVRDGFYAEALCV 162
             P   L++ YA   L ++A  L   +   +       + WN +ISL V+ G  AEA+ V
Sbjct: 210 RFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEV 269

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYG 220
              M S  +R D  T+ S L AC  +  +  GR +H+ +  DA    + FV +ALV MY 
Sbjct: 270 LYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYA 329

Query: 221 KFGQVDVARRLFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
              +V  ARR+FD + E  R    WN MI  YA  G+ +EA                   
Sbjct: 330 GNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEA------------------- 370

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAV 337
                           LEL SRM  +     S  T+ G L AC+        + +HG  V
Sbjct: 371 ----------------LELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVV 414

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           +        V+NAL+ MY+R  ++  A  +F M   + +++WN++++G      A E+  
Sbjct: 415 KRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQ 474

Query: 398 LFREMFRSGVE----------------PNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           L  EM                      PN +T+ ++LP CA +A    GKE H Y +R A
Sbjct: 475 LVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHA 534

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           + ++ + + ++LV+MYA+ G +  +++VFD + RR+ +T+  LI  YG+ G G  A+ LF
Sbjct: 535 LESD-IAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALF 593

Query: 502 EEMNKN-QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           +EM    +  P+ VT +A L+ACSHSGLV  G + F  M   +G+ P  +  AC+VD+ G
Sbjct: 594 DEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLG 653

Query: 561 RAGLLNKAKEIITKM-PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
           RAG L++A  IIT M P     + W++LLGAC++HRN  +GE AAE+L E  P  + +YV
Sbjct: 654 RAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYV 713

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L+ N+Y+A G WDK   VR  MR  GV K PGC+W++       F+  ++S+  + E++ 
Sbjct: 714 LLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHA 773

Query: 680 LLGGLTELMKDAGYV 694
            +  L E M+  GY 
Sbjct: 774 HMDALWERMRREGYA 788



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 130/444 (29%), Positives = 195/444 (43%), Gaps = 62/444 (13%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           D+F  P  +K+   + D    R +H+        H  S  V NAL++ Y + G +D A  
Sbjct: 62  DHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALA 121

Query: 231 LFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           LF       RDAVS+N++ISA      W+ A     +M  EG                  
Sbjct: 122 LFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEG------------------ 163

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV---GALKLGKEIHGSAVRGCYGEYE 345
                      R       L SV     L ACSH+      +LG+E H  A++  + +  
Sbjct: 164 -----------RHDVSSFTLVSV-----LLACSHLPGDDGRRLGREAHAFALKRGFLDEG 207

Query: 346 NVR---NALITMYSRCKDLRHAYILFKMTAEK------SIITWNSMLSGYTHLD-CAEES 395
             R   NAL++MY+R   +  A  LF+ TA         ++TWN+M+S       CAE  
Sbjct: 208 RERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAV 267

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             L+ +M   GV P+ VT AS LP C+R+  L  G+E H  +L+ A    +  + ++LV+
Sbjct: 268 EVLY-DMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVD 326

Query: 456 MYARSGKVPEAKSVFDLMSR--RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPD 512
           MYA + KV  A+ VFD++    R    + ++I GY   G    AL+LF  M       P 
Sbjct: 327 MYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPS 386

Query: 513 HVTMVAVLSACSHS-GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
             TM  VL AC+ S G    G++         G+         ++D+Y R G ++ A+ I
Sbjct: 387 ETTMSGVLPACARSEGFA--GKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRI 444

Query: 572 ITKM-PYTPTSAMWATLLGACQIH 594
              + P    S  W TL+  C + 
Sbjct: 445 FAMIDPRDVVS--WNTLITGCVVQ 466


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 213/685 (31%), Positives = 340/685 (49%), Gaps = 80/685 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G+ ++A   + R+ +     D V  +F  ++  C    +LAQG+++H      GL+
Sbjct: 85  YAQNGHSTEALVLYWRMNLQGLGTDHV--TFVSVLGAC---SSLAQGREIHNRVFYSGLD 139

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               L   LVT YA F    +A  + ++   R    WN +I  + + G ++ AL ++K+M
Sbjct: 140 SFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQV 225
           +   ++ ++ TY +V+        +  GR +H+ I A   +  L V  AL++MYGK G  
Sbjct: 200 KC-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSS 258

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             AR +FDKM +RD VSWN MI  Y   G + EA +L+ ++  EG               
Sbjct: 259 HEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEG--------------- 303

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV-RGCYGEY 344
                FK         RT+ T+      V  LGACS V AL  G+ +H   + RG   E 
Sbjct: 304 -----FK---------RTKATF------VSILGACSSVKALAQGRLVHSHILERGLDSEV 343

Query: 345 ENVRNALITMYSRC----------------------------------KDLRHAYILFKM 370
             V  AL+ MY++C                                  KD R A  +F  
Sbjct: 344 A-VATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQH 429
              +  I+WN+M++ Y    CA  +  +FREM   +G++P+ VT  ++L  CA +  L  
Sbjct: 403 LGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
            K  H  I   +    ++++ N+L+ MYAR G + EA+ +F     +  V++T+++A + 
Sbjct: 463 VKALHAQI-SESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFS 521

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G    AL LF+EM+   +KPD VT  ++L  C+H G + +G + F  M  ++ + P  
Sbjct: 522 QYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTA 581

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           +HFA MVDL GR+G L  AKE++  MP+ P    W T L AC+IH    +GE AAE++ E
Sbjct: 582 DHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYE 641

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             P ++  Y+ ++N+YAA G W+K+A VR  M + G++K+PG ++++       F     
Sbjct: 642 LDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGK 701

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYV 694
            + +  EI   L  L  LM+ AGYV
Sbjct: 702 YHPRTDEICEELTRLHGLMRAAGYV 726



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 231/503 (45%), Gaps = 52/503 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C     + +G+ LH        E++ ++   L++ Y       +A  + E+ 
Sbjct: 9   TFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM 68

Query: 136 NIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD- 192
           + R    + WN +I+ Y ++G   EAL +Y +M  + +  D+ T+ SVL AC  +     
Sbjct: 69  DWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGRE 128

Query: 193 -FGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
              RV +S +D+       + NALV+MY +FG V  A+R+F  +  RD  SWN +I A++
Sbjct: 129 IHNRVFYSGLDSFQS----LANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G W  A ++F EM+ + V+ N  T+                + ++S   T E      
Sbjct: 185 QSGDWSGALRIFKEMKCD-VKPNSTTY----------------INVISGFSTPEV----- 222

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                         L  G++IH   V   +     V  ALI MY +C     A  +F   
Sbjct: 223 --------------LPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKM 268

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            ++ +++WN M+  Y       E+  L++++   G +    T  SIL  C+ V  L  G+
Sbjct: 269 KKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR 328

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
             H +IL R + +E + +  +LV MYA+ G + EA+ VF+ M  RD V +++LI  Y   
Sbjct: 329 LVHSHILERGLDSE-VAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASN 387

Query: 492 GEG---RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           G G   R A K+F+ +       D ++  A+++    +G  V   K F  MT   G+ P 
Sbjct: 388 GYGKDARKARKVFDRLGSR----DTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPD 443

Query: 549 LEHFACMVDLYGRAGLLNKAKEI 571
              F  +++     G L++ K +
Sbjct: 444 AVTFIAVLEACASLGRLSEVKAL 466



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 197/418 (47%), Gaps = 41/418 (9%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLF 232
           DN T+ +VL +C    DV  GR +H  I     E    V NAL+SMYGK   +  AR +F
Sbjct: 6   DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           + M                    W++               NV++WN +     + G+  
Sbjct: 66  ESMD-------------------WRQR--------------NVVSWNAMIAAYAQNGHST 92

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
             L L  RM  Q    D V  V  LGACS   +L  G+EIH          ++++ NAL+
Sbjct: 93  EALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALV 149

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
           TMY+R   +  A  +F+    +   +WN+++  ++       +  +F+EM +  V+PN  
Sbjct: 150 TMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNST 208

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T  +++   +    L  G++ H  I+    F+  L++  +L+ MY + G   EA+ VFD 
Sbjct: 209 TYINVISGFSTPEVLPEGRKIHAEIVANG-FDTDLVVATALINMYGKCGSSHEAREVFDK 267

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M +RD V++  +I  Y + G+   AL+L+++++    K    T V++L ACS    + +G
Sbjct: 268 MKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG 327

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +     +    G+  ++     +V++Y + G L +A+++   M      A W+TL+GA
Sbjct: 328 RLVHSHILE-RGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVA-WSTLIGA 383


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 201/616 (32%), Positives = 313/616 (50%), Gaps = 65/616 (10%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA----------CG 186
           +R  + +N +I+ Y  +G    AL +++ M+    R D+FT+ SVL A          CG
Sbjct: 109 MRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG 168

Query: 187 EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQ--------VDVARRLFDKMLER 238
           +M      +    C+ +       V NAL+S+Y K           +  AR+LFD+M +R
Sbjct: 169 QM-HCAVVKTGMGCVSSS------VLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKR 221

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           D ++W TMI+ Y        A ++F  M    VE     WN +  G +  G F+  L L 
Sbjct: 222 DELTWTTMITGYVRNDDLNGAREVFEAM----VENLGAAWNAMISGYVHCGCFQEALTLC 277

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN----VRNALITM 354
            +MR      D +     + AC++VG+ ++GK++H   ++       +    V NALIT+
Sbjct: 278 RKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITL 337

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF----------------- 397
           Y +   +  A  +F     ++IITWN++LSGY +    EE+                   
Sbjct: 338 YCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMI 397

Query: 398 --------------LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
                         LF++M   G EP     A  L  C+ +  L++G++ H  ++    +
Sbjct: 398 SGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLG-Y 456

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
              L + N+++ MYA+ G V  A+SVF  M   D V++ S+IA  G  G G  A++LF++
Sbjct: 457 ESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQ 516

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M K  + PD +T + VL+ACSH+GLV +G+  F  M   YGI P  +H+A MVDL+ RAG
Sbjct: 517 MLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAG 576

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
           + + A+ +I  MP  P + +W  LL  C+IH N  +G  AAE+L +  P+N G YVL++N
Sbjct: 577 MFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSN 636

Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGG 683
           +YA  G W+ +AKVR  MRD  VRK P C+W++  N    F+VDD  + +   +Y  L  
Sbjct: 637 IYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQ 696

Query: 684 LTELMKDAGYVVKEEF 699
           L   MK  GY+   +F
Sbjct: 697 LGLEMKKLGYIPDTKF 712



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 193/462 (41%), Gaps = 89/462 (19%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L+ MY K   V  AR+LF+++   DA++  T+I+AY + G  +   ++F      G  
Sbjct: 52  NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIF-----NGTP 106

Query: 273 V---NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS-HVGALKL 328
           +   + + +N +  G    G+    LEL   MR  +   D       L A    VG  + 
Sbjct: 107 LYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQ 166

Query: 329 GKEIHGSAVR---GCYGEYENVRNAL---------------------------------- 351
             ++H + V+   GC     +V NAL                                  
Sbjct: 167 CGQMHCAVVKTGMGCVS--SSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDEL 224

Query: 352 -----ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
                IT Y R  DL  A  +F+   E     WN+M+SGY H  C +E+  L R+M   G
Sbjct: 225 TWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG 284

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH-------------------- 446
           ++ + +T  +I+  CA V + Q GK+ H YIL+  +   H                    
Sbjct: 285 IQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKV 344

Query: 447 --------------LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
                         ++ WN+++  Y  +G++ EAKS F+ M  ++ +T T +I+G    G
Sbjct: 345 DEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNG 404

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G   LKLF++M  +  +P        L+ACS  G +  G++   ++  + G    L   
Sbjct: 405 FGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL-GYESSLSVG 463

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
             M+ +Y + G++  A+ +   MP     + W +++ A   H
Sbjct: 464 NAMISMYAKCGVVEAAESVFVTMPSVDLVS-WNSMIAALGQH 504



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 172/412 (41%), Gaps = 87/412 (21%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   +A     ++R      D +  ++  II  C  V +   GKQ+HA    L  E NP 
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDI--TYTTIISACANVGSFQMGKQMHA--YILKNELNPN 323

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYV------------- 151
               L    A  +LY     + E   I Y +P      WN ++S YV             
Sbjct: 324 HSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFE 383

Query: 152 ------------------RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
                             ++GF  E L ++KQM+       +F +   L AC  +  ++ 
Sbjct: 384 EMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALEN 443

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR +H+  +   +E SL V NA++SMY K G V+ A  +F  M   D VSWN+MI+A   
Sbjct: 444 GRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQ 503

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G   +A +LF +M +EGV  + IT+ T+                               
Sbjct: 504 HGHGVKAIELFDQMLKEGVFPDRITFLTV------------------------------- 532

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYG--EYENVRNALITMYSRCKDLRHAYILF-K 369
               L ACSH G ++ G+    S +   YG    E+    ++ ++ R     +A I+   
Sbjct: 533 ----LTACSHAGLVEKGRHYFNSMLES-YGITPCEDHYARMVDLFCRAGMFSYARIVIDS 587

Query: 370 MTAEKSIITWNSMLSG---YTHLDCAEESA-FLFREMFRSGVEPNYVTIASI 417
           M ++     W ++L+G   + ++D   E+A  LF+ M ++  +  YV +++I
Sbjct: 588 MPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQN--DGTYVLLSNI 637



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG +P    +  +L +  + +N+ + ++     L   + N   +   +L+  Y   G
Sbjct: 39  MIASGFKPRGHFLNRLLEMYCKSSNVVYARQ-----LFEEIPNPDAIARTTLITAYCALG 93

Query: 462 KVPEAKSVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            +   + +F+   +  RD V Y ++I GY   G+G  AL+LF  M ++  +PD  T  +V
Sbjct: 94  NLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSV 153

Query: 520 LSA 522
           LSA
Sbjct: 154 LSA 156



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 23/226 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA  +  C  + AL  G+QLHA  + LG E +  +   +++ YA   +   A    E+ 
Sbjct: 427 AFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA----ESV 482

Query: 136 NIRYP----LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +  P    + WN +I+   + G   +A+ ++ QM    +  D  T+ +VL AC     V
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542

Query: 192 DFGR-VVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKMLERD-AVSWNTMIS 248
           + GR   +S +++        H A +V ++ + G    AR + D M  +  A  W  +++
Sbjct: 543 EKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLA 602

Query: 249 A---YASKGLWKEAF-QLFVEM-QEEGVEV-------NVITWNTIA 282
               + +  L  EA  QLF  M Q +G  V       +V  WN +A
Sbjct: 603 GCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVA 648


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 194/575 (33%), Positives = 303/575 (52%), Gaps = 23/575 (4%)

Query: 94   KQLHACAIALGLEKNPVLVPKLVTFYASFS---LYNNACFLVENSNIRYPLP--WNLLIS 148
            K+LHA  I  GL      + K++  YA      ++ +  F      I  P    WN+LI 
Sbjct: 470  KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVF----DQIEAPTTFLWNILIR 525

Query: 149  LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS 208
               +    A+A+  YK+ Q   +  DN T+P +LKAC  +  ++ G  +H+ I      S
Sbjct: 526  GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 585

Query: 209  -LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
             +FV N+L+ +Y   G +  AR +FD+M+ +D VSWN++I  Y+    +K+   LF  MQ
Sbjct: 586  DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645

Query: 268  EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG--- 324
             EGV+ + +T   +   C R G++     ++   R  E Y   V   +G     + G   
Sbjct: 646  NEGVKADKVTMIKVVSACTRLGDYSMADYMV---RYIEDYCIEVDVYLGNTLVDYFGRRG 702

Query: 325  ALKLGKEIH-GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L+  +++     VR          NA+I  Y++ +D+  A  +F    +K +I+W+SM+
Sbjct: 703  QLQSAEKVFFNMKVRNIV-----TMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMI 757

Query: 384  SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
            SGY+  +   ++  +FR+M R+ V+P+ + IAS++  CA +  L  GK  H Y+ RR   
Sbjct: 758  SGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYV-RRNNI 816

Query: 444  NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
                ++ NSL++MY + G   EA  VF  M  +D +++ S+I G    G  + +L LF+ 
Sbjct: 817  KADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQA 876

Query: 504  MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
            M     +P+ VT + VL AC+++ LV EG   FE M  +Y + PQ++H+ C+VDL GRAG
Sbjct: 877  MLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAG 936

Query: 564  LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
             L KA   IT+MP  P   +W  LLG+C  H +  I E   +KL E  P NSG Y L++N
Sbjct: 937  QLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSN 996

Query: 624  MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
             YA+   W +   VR CM D  VRK PGC+ V+A 
Sbjct: 997  AYASAHRWSEAMNVRQCMADTDVRKSPGCSAVEAA 1031



 Score =  188 bits (478), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 184/348 (52%), Gaps = 33/348 (9%)

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK--------- 359
           D+ A    L AC+ +G  +   ++HG  VR  +     V  AL+ +Y  C          
Sbjct: 88  DTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAF 147

Query: 360 ----------------------DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
                                 ++ +A +LF+    +++++W+ M+ GYT      E+  
Sbjct: 148 EEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVA 207

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           LFR M   G+ P+ +T+ +++P  + V  +  G+  H Y  +  +  + + + NSL+++Y
Sbjct: 208 LFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWD-VRVGNSLIDLY 266

Query: 458 ARSGKVPEAKSVFD-LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           A+ G +  +  VFD ++ RR+ V++TS+I+G+ + G    A++LF +M +  I+P+ +T 
Sbjct: 267 AKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITF 326

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           ++VL ACSH GLV +G   F+ M   Y I P ++HF C++D+ GRAG L +A++II   P
Sbjct: 327 LSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFP 386

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
               + +W TLLG C  +    +GE   +K+L    E  G +V+++NM
Sbjct: 387 VEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNM 434



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 222/451 (49%), Gaps = 14/451 (3%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF---LV 132
           +F  I+  C ++ AL +G+Q+H     LGL  +  +   L+  YA+     N C+   + 
Sbjct: 554 TFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACG---NLCYARSVF 610

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +   ++  + WN LI  Y +   + + L ++K MQ+  ++ D  T   V+ AC  + D  
Sbjct: 611 DEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYS 670

Query: 193 FGR-VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
               +V    D C E  +++ N LV  +G+ GQ+  A ++F  M  R+ V+ N MI+AYA
Sbjct: 671 MADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYA 730

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                  A ++F ++ ++    ++I+W+++  G  +  +F   LE+  +M+  +   D++
Sbjct: 731 KGQDIVSARKIFDQIPKK----DLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAI 786

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                + +C+H+GAL LGK +H    R        + N+LI MY +C   + A  +FK  
Sbjct: 787 VIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEM 846

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            EK  ++WNS++ G  +    +ES  LF+ M   G  PN VT   +L  CA    ++ G 
Sbjct: 847 KEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGL 906

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYGI 490
           +    + R       +  +  +V++  R+G++ +A + + ++    D V +  L+     
Sbjct: 907 DHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNT 966

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            G+  +A  + +++  N+++P +     +LS
Sbjct: 967 HGDVAIAEIVTKKL--NELEPSNSGNYTLLS 995



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 164/334 (49%), Gaps = 7/334 (2%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R P PW+ L+  Y       +AL +++  +      D + +   LKAC  +        +
Sbjct: 53  RRPTPWHALLKAYSHGPHPQDALQLFRHARWHAA-DDTYAFTFALKACAGLGWPRCCMQL 111

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H   +    E+  +VH ALV++Y   G +  +R  F++M  ++AVSWN +I+ +A  G  
Sbjct: 112 HGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEV 171

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           + A  LF  M       NV++W+ +  G  R       + L  RM  +      +  +  
Sbjct: 172 EYARLLFERMPCR----NVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAV 227

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKS 375
           + A S+VG + +G+ +HG   +        V N+LI +Y++   ++++  +F +M   ++
Sbjct: 228 VPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRN 287

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W S++SG+     + ++  LF +M R+G+ PN +T  S+L  C+    ++ G  F  
Sbjct: 288 LVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFK 347

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
            ++     N  +  +  +++M  R+G++ EA+ +
Sbjct: 348 SMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQI 381



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 112/519 (21%), Positives = 207/519 (39%), Gaps = 68/519 (13%)

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN V    ++T +A +     A  L E    R  + W+ +I  Y R     EA+ ++++M
Sbjct: 153 KNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRM 212

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
            +  I     T  +V+ A   +  +  G  +H  C      W + V N+L+ +Y K G +
Sbjct: 213 MAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSI 272

Query: 226 DVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
             + R+FD+ML+ R+ VSW ++IS +A  GL  +A +LF +M+  G+  N IT+ ++   
Sbjct: 273 QNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSV--- 329

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           L ACSH G ++ G     S +   Y   
Sbjct: 330 --------------------------------LHACSHGGLVEQGVAFFKSMIYE-YNIN 356

Query: 345 ENVRN--ALITMYSRCKDLRHA-YILFKMTAEKSIITWNSML---SGYTHLDCAEESAFL 398
            +V++   +I M  R   LR A  I+     E +   W ++L   S Y  ++  E +   
Sbjct: 357 PDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKK 416

Query: 399 FREMFRSGVEPNYVTIASILPLCAR----------------------VANLQHGKEFHCY 436
              + R     ++V ++++L    R                      +  ++  K  H Y
Sbjct: 417 ILALERE-FGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKRLHAY 475

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            +   ++N H  +   L         +  A  VFD +       +  LI G         
Sbjct: 476 YIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPAD 535

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A+  +++     + PD++T   +L AC+    + EG++    +T + G+   +     ++
Sbjct: 536 AIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKL-GLLSDIFVSNSLI 594

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
            LY   G L  A+ +  +M      +  + + G  Q +R
Sbjct: 595 HLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNR 633



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 114/279 (40%), Gaps = 35/279 (12%)

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI----- 417
           H+ ++     ++    W+++L  Y+H    +++  LFR       +  Y    ++     
Sbjct: 42  HSQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFRHARWHAADDTYAFTFALKACAG 101

Query: 418 --LPLCARVAN---LQHGKEFHCYILRRAMFNEHLLL--------------------WNS 452
              P C    +   ++ G EF  Y+   A+ N ++L                     WN 
Sbjct: 102 LGWPRCCMQLHGLVVRKGFEFQTYV-HTALVNVYILCGCLADSRMAFEEMPVKNAVSWNV 160

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           ++  +A  G+V  A+ +F+ M  R+ V+++ +I GY        A+ LF  M    I P 
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPS 220

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            +T++AV+ A S+ G ++ G+          G+   +     ++DLY + G +  +  + 
Sbjct: 221 EITVLAVVPALSNVGKILIGEA-LHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVF 279

Query: 573 TKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
            +M        W +++    +H   G+   A E   + R
Sbjct: 280 DEMLDRRNLVSWTSIISGFAMH---GLSVKAVELFADMR 315


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 195/703 (27%), Positives = 344/703 (48%), Gaps = 67/703 (9%)

Query: 19  EKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIR-ITAASHDVVLDSF 77
           +  IP   K+P       R +    +   A  G + +A EA   +R   A  H+V++  F
Sbjct: 23  QNLIPATSKEPPPRLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGF 82

Query: 78  AH----------------------------IIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           A                             ++ CC ++  L +G+  H   I LGLE + 
Sbjct: 83  ADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDV 142

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ-S 168
                LV FYA   L  +A  + +   +R  + WN+++  YV +G  + AL  +++M  +
Sbjct: 143 YTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDA 202

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
             ++ D+    + L AC        G+ +H   I    E  + V  +L+ MY K G+V  
Sbjct: 203 LEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAY 262

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR +F  M  R                                    V+TWN + GG   
Sbjct: 263 ARSVFATMPLR-----------------------------------TVVTWNCMIGGYAL 287

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                   +   +MR +   ++ V  +  L AC+   +   G+ +HG  VR  +  +  +
Sbjct: 288 NERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVL 347

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
             AL+ MY +   +  +  +F   A K++++WN+M++ Y + +   E+  LF E+    +
Sbjct: 348 ETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPL 407

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            P+Y T+++++P    + +L+H ++ H YI+    + E+ L+ N+++ MYARSG V  ++
Sbjct: 408 YPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLG-YAENTLIMNAVLHMYARSGDVVASR 466

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            +FD M  +D +++ ++I GY I G+G+ AL++F+EM  N ++P+  T V+VL+ACS SG
Sbjct: 467 EIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSG 526

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG   F  M   YG+ PQ+EH+ CM DL GR G L +  + I  MP  PTS +W +L
Sbjct: 527 LVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSL 586

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L A +   +  I E+AAE++ +   +N+G Y+++++MYA  G W+ + +VR  M++ G+R
Sbjct: 587 LTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLR 646

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           +    + V+  +    F   D S+ Q++ I+ +   L+  +K+
Sbjct: 647 RTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRKIKE 689


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 192/627 (30%), Positives = 307/627 (48%), Gaps = 41/627 (6%)

Query: 76   SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
            +F H++  C    A + GK +H   +  G++ N  L   L+  Y        A  + E +
Sbjct: 488  TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGT 547

Query: 136  NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
              R  + WN +I+ + + G Y  A  ++ +M+   +  D  T+ SVL  C     ++ GR
Sbjct: 548  RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR 607

Query: 196  VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
             +H   I++  +  + + NAL++MY + G +  A  +F  +  R                
Sbjct: 608  QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR---------------- 651

Query: 255  LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                               NV++W  + GG    G  +   EL  +M  Q      V + 
Sbjct: 652  -------------------NVMSWTAMIGGFADQGEDRKAFELFWQM--QNDGFKPVKST 690

Query: 315  IG--LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
                L AC     L  GK++    +   Y     V NALI+ YS+   +  A  +F    
Sbjct: 691  FSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMP 750

Query: 373  EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
             + I++WN M++GY        +     +M   GV  N  +  SIL  C+  + L+ GK 
Sbjct: 751  NRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKR 810

Query: 433  FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
             H  I++R M  + + +  +L+ MYA+ G + EA+ VFD  + ++ VT+ ++I  Y   G
Sbjct: 811  VHAEIVKRKMQGD-VRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHG 869

Query: 493  EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
                AL  F  M+K  IKPD  T  ++LSAC+HSGLV+EG + F  + S +G+ P +EH+
Sbjct: 870  LASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHY 929

Query: 553  ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
             C+V L GRAG   +A+ +I +MP+ P +A+W TLLGAC+IH N  + E AA   L+   
Sbjct: 930  GCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNA 989

Query: 613  ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
             N   YVL++N+YAA G WD +AK+R  M   G+RK PG +W++  N+   F+  D S+ 
Sbjct: 990  RNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHP 1049

Query: 673  QAQEIYPLLGGLTELMKDAGYVVKEEF 699
            +  EIY  L  L+  M+ AGY    ++
Sbjct: 1050 ETAEIYEELKRLSLEMERAGYSPDTQY 1076



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 149/489 (30%), Positives = 243/489 (49%), Gaps = 40/489 (8%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L +GK++H  A+  GL  +  +   L T +        A   +E    R  + +N LI+ 
Sbjct: 300 LDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAA 359

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWS 208
             + G Y EA   Y QM+S  +  +  TY SVL AC     +  G ++HS I +  H   
Sbjct: 360 LAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSD 419

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           + + N+L+SMY + G +  AR LF+ M +RD +SWN +I+ YA +    EA +L+ +MQ 
Sbjct: 420 VQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQS 479

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           EGV+   +T+                L LLS                   AC++  A   
Sbjct: 480 EGVKPGRVTF----------------LHLLS-------------------ACTNSSAYSD 504

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GK IH   +R       ++ NAL+ MY RC  +  A  +F+ T  + II+WNSM++G+  
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQ 564

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               E +  LF EM + G+EP+ +T AS+L  C     L+ G++ H  I+   +    + 
Sbjct: 565 HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGL-QLDVN 623

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           L N+L+ MY R G + +A  VF  +  R+ +++T++I G+  QGE R A +LF +M  + 
Sbjct: 624 LGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDG 683

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFER-MTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            KP   T  ++L AC  S  + EG+K     + S Y +   + +   ++  Y ++G +  
Sbjct: 684 FKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTD 741

Query: 568 AKEIITKMP 576
           A+++  KMP
Sbjct: 742 ARKVFDKMP 750



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 146/551 (26%), Positives = 264/551 (47%), Gaps = 45/551 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
            A  G+  +AFE + ++R    S  VV++  ++  ++  C   KAL  G+ +H+    +G
Sbjct: 360 LAQHGHYEEAFEQYYQMR----SDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVG 415

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   L++ YA       A  L      R  + WN +I+ Y R     EA+ +YK
Sbjct: 416 HSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYK 475

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           QMQS  ++    T+  +L AC        G+++H  I  +  + +  + NAL++MY + G
Sbjct: 476 QMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCG 535

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +  A+ +F+    RD +SWN+MI+ +A  G ++ A++LF+EM++EG+E + IT+ ++  
Sbjct: 536 SIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASV-- 593

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                            L  C +  AL+LG++IH   +      
Sbjct: 594 ---------------------------------LVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             N+ NALI MY RC  L+ AY +F     +++++W +M+ G+       ++  LF +M 
Sbjct: 621 DVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
             G +P   T +SIL  C   A L  GK+   +IL    +     + N+L+  Y++SG +
Sbjct: 681 NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSG-YELDTGVGNALISAYSKSGSM 739

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A+ VFD M  RD +++  +IAGY   G G  AL+   +M +  +  +  + V++L+AC
Sbjct: 740 TDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNAC 799

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           S    + EG++    +     +   +   A ++ +Y + G L +A+E+            
Sbjct: 800 SSFSALEEGKRVHAEIVK-RKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFT-EKNVVT 857

Query: 584 WATLLGACQIH 594
           W  ++ A   H
Sbjct: 858 WNAMINAYAQH 868



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 144/546 (26%), Positives = 255/546 (46%), Gaps = 43/546 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A +G   KAF+ F  ++        +  ++  I+  C     L  GK++H+  I  G +
Sbjct: 158 YAQQGFKKKAFQLFEEMQTAGFIPSKI--TYISILTACCSPAELEYGKKIHSKIIEAGYQ 215

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           ++P +   L+  Y       +A  +      R  + +N ++ LY +  +  E + ++ QM
Sbjct: 216 RDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQM 275

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
            S  I  D  TY ++L A      +D G+ +H   ++      + V  AL +M+ + G V
Sbjct: 276 SSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDV 335

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A++  +   +RD V +N +I+A A  G ++EAF+ + +M+ +GV +N  T+ ++    
Sbjct: 336 AGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSV---- 391

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          L ACS   AL  G+ IH       +    
Sbjct: 392 -------------------------------LNACSTSKALGAGELIHSHISEVGHSSDV 420

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            + N+LI+MY+RC DL  A  LF    ++ +I+WN++++GY   +   E+  L+++M   
Sbjct: 421 QIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSE 480

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVP 464
           GV+P  VT   +L  C   +    GK  H  ILR  +  N HL   N+L+ MY R G + 
Sbjct: 481 GVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLA--NALMNMYRRCGSIM 538

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           EA++VF+    RD +++ S+IAG+   G    A KLF EM K  ++PD +T  +VL  C 
Sbjct: 539 EAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCK 598

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           +    +E  +Q   +    G+   +     ++++Y R G L  A E+   + +    + W
Sbjct: 599 NPE-ALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMS-W 656

Query: 585 ATLLGA 590
             ++G 
Sbjct: 657 TAMIGG 662



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 149/574 (25%), Positives = 269/574 (46%), Gaps = 46/574 (8%)

Query: 41  LETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACA 100
           ++ ++D   RG+  +      + R T  +    +D    ++  C + ++LA+ K++HA  
Sbjct: 53  VKVMRDEQHRGSEREDLSNAYQPRPTETNRAAYVD----LVQNCTRKRSLAEAKRIHAQM 108

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           +  G+  +  L   L+  Y      ++A  +      R  + WN LIS Y + GF  +A 
Sbjct: 109 VEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAF 168

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMY 219
            ++++MQ+        TY S+L AC    ++++G+ +HS  I+A ++    V N+L++MY
Sbjct: 169 QLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMY 228

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
           GK   +  AR++F  +  RD VS+NTM+  YA K   +E   LF +M  EG+  + +T+ 
Sbjct: 229 GKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYI 288

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
            +                          LD+  T            L  GK IH  AV  
Sbjct: 289 NL--------------------------LDAFTT---------PSMLDEGKRIHKLAVNE 313

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                  V  AL TM+ RC D+  A    +  A++ ++ +N++++        EE+   +
Sbjct: 314 GLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQY 373

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M   GV  N  T  S+L  C+    L  G+  H +I      +  + + NSL+ MYAR
Sbjct: 374 YQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI-SEVGHSSDVQIGNSLISMYAR 432

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +P A+ +F+ M +RD +++ ++IAGY  + +   A+KL+++M    +KP  VT + +
Sbjct: 433 CGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHL 492

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           LSAC++S    +G+   E +    GI         ++++Y R G + +A+ +        
Sbjct: 493 LSACTNSSAYSDGKMIHEDILR-SGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARD 551

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
             + W +++     H   G  E A +  LE + E
Sbjct: 552 IIS-WNSMIAG---HAQHGSYEAAYKLFLEMKKE 581



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 209/465 (44%), Gaps = 43/465 (9%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           A  G+   A++ F  ++      D +  +FA ++  C   +AL  G+Q+H   I  GL+ 
Sbjct: 563 AQHGSYEAAYKLFLEMKKEGLEPDKI--TFASVLVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           +  L   L+  Y       +A  +  +   R  + W  +I  +   G   +A  ++ QMQ
Sbjct: 621 DVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGR-VVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
           +   +    T+ S+LKAC     +D G+ V+   +++ +E    V NAL+S Y K G + 
Sbjct: 681 NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMT 740

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            AR++FDKM  RD +SWN MI+ YA  GL   A Q   +MQE+GV +N  ++ +I     
Sbjct: 741 DARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSI----- 795

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                         L ACS   AL+ GK +H   V+        
Sbjct: 796 ------------------------------LNACSSFSALEEGKRVHAEIVKRKMQGDVR 825

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V  ALI+MY++C  L  A  +F    EK+++TWN+M++ Y     A ++   F  M + G
Sbjct: 826 VGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEG 885

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           ++P+  T  SIL  C     +  G      +  +   +  +  +  LV +  R+G+  EA
Sbjct: 886 IKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEA 945

Query: 467 KSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           +++ + M    D   + +L+    I G     + L E    N +K
Sbjct: 946 ETLINQMPFPPDAAVWETLLGACRIHGN----VALAEHAANNALK 986


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 197/660 (29%), Positives = 330/660 (50%), Gaps = 46/660 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  CG V AL  G++ H  A+ +GL+ +  +   L+  Y       +A  L +  
Sbjct: 43  TLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGM 102

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF-- 193
                + +  ++    + G   +AL ++ +M    IR D     SVL AC +    D+  
Sbjct: 103 PSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNV 162

Query: 194 ------GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
                  + +H+  +         V N+LV +Y K  ++D A ++F+ +     VSWN +
Sbjct: 163 ARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNIL 222

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVN-------------------------------V 275
           I+ Y   G ++ A ++   MQE G E N                               V
Sbjct: 223 ITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSV 282

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            TWNT+  G  +    +  ++L  RM+ Q    D     + L +CS +G  +LGK++H +
Sbjct: 283 TTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSA 342

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           +VR        V + LI +YS+C  +  A I+F M  E+ ++ WNSM+SG      +EE+
Sbjct: 343 SVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEA 402

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
               ++M  +G+ P   + AS++ LCAR++++  G++ H  +L+   +++++ +  SL++
Sbjct: 403 FDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDG-YDQNVYVGCSLID 461

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+SG + +A+  F+ M  ++ V +  +I GY   G G  A++LFE M   + KPD VT
Sbjct: 462 MYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVT 521

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            +AVL+ CSHSGLV E    F  M S YGI P +EH+ C++D   RA    + + +I KM
Sbjct: 522 FIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKM 581

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           PY     +W  LL AC +H N  +GE++A+ L    P+N   YVL++N+YA  G     +
Sbjct: 582 PYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDAS 641

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT--SNVQAQEIYPLLG---GLTELMKD 690
            VR  M   GV K  G +WV+  +    F+V D   ++V  + ++   G   G+TE+  D
Sbjct: 642 AVRALMSSRGVVKGRGYSWVNHKDGSRAFMVADDLGTDVGERTMFSDNGDTSGMTEVHID 701



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 233/514 (45%), Gaps = 58/514 (11%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + WN +I+   R G   EAL +Y+ M    +   NFT  SVL ACG +  +D GR  
Sbjct: 4   RNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC 63

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H   +    +   FV N L+ MY K G V  A RLFD M   + VS+  M+   A  G  
Sbjct: 64  HGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAV 123

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLR--TGNFKGVLELLSRMRTQETYLDSVATV 314
            +A +LF  M   G+ V+ +  +++ G C +   G++      ++R       + ++   
Sbjct: 124 DDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYN-----VARAIQLAQSIHALVVR 178

Query: 315 IGLGACSHVG---------ALKLGKEIH------------------GSAVRGCY------ 341
            G G+  HVG          +K+ + I                   G    GCY      
Sbjct: 179 KGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEV 238

Query: 342 ------GEYENVRNALITMYSRC---KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
                   +E        M + C   +D+  A  +F    + S+ TWN++LSGY   +  
Sbjct: 239 LEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELH 298

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           +E+  LFR M    V+P+  T+A IL  C+R+ N + GK+ H   +R  + N+ + + + 
Sbjct: 299 QETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHND-MFVASG 357

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L+++Y++ G+V  A  +F++M+ RD V + S+I+G  I      A    ++M +N + P 
Sbjct: 358 LIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPT 417

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC-MVDLYGRAGLLNKAKEI 571
             +  ++++ C+    + +G++   ++  +   + Q  +  C ++D+Y ++G ++ A+  
Sbjct: 418 ESSYASMINLCARLSSIPQGRQMHAQV--LKDGYDQNVYVGCSLIDMYAKSGNMDDARLF 475

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
              M      A    + G  Q     G GE A E
Sbjct: 476 FNCMIVKNLVAWNEMIHGYAQ----NGFGEKAVE 505



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 14/213 (6%)

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +++ ++WN++++         E+  +++ M + G+ P   T+AS+L  C  VA L  G+ 
Sbjct: 3   DRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRR 62

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H   ++  + + H  + N L+ MY + G V +A  +FD M   +EV++T+++ G    G
Sbjct: 63  CHGLAVKVGL-DGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGG 121

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER----MTSIYGI--- 545
               AL+LF  M++  I+ D V + +VL AC+ +     G     R      SI+ +   
Sbjct: 122 AVDDALRLFARMSRTGIRVDPVAVSSVLGACAQA---CAGDYNVARAIQLAQSIHALVVR 178

Query: 546 --FPQLEHFA-CMVDLYGRAGLLNKAKEIITKM 575
             F   +H    +VDLY +   +++A ++   +
Sbjct: 179 KGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESL 211


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 202/619 (32%), Positives = 329/619 (53%), Gaps = 30/619 (4%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-SFSLYNNACFLVENSNIRYPLPWN 144
           ++ A  Q   L  C  +L L   P +   L+     S +L++   ++++  +I      N
Sbjct: 77  RMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFH--AYVLKLGHIDDHFIRN 134

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC 204
            ++ +Y ++G    A  +++QM  R +   N    S++  C +  +     V+ + + A 
Sbjct: 135 AILDMYAKNGQVDLARNLFEQMAERTLADWN----SMISGCWKSGNETEAVVLFNMMPA- 189

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
              ++    ++V+ Y K G ++ ARR FD+M ER  VSWN M SAYA K   KEA  LF 
Sbjct: 190 --RNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFH 247

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           +M EEG+  +  TW      C   G+      +L  +  +   L+S      L   +  G
Sbjct: 248 QMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFG 307

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNA-----LITMYSRCKDLRHAYILFKMTAEKSIITW 379
            L++ + I        + E  + RNA     +I+ Y+R   L  A  LF    ++ +++W
Sbjct: 308 NLEIARNI--------FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSW 359

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           NSM++GY     +  S  LF+EM     ++P+ VTIAS+L  C  +  L+    +   I+
Sbjct: 360 NSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSY-WVLDIV 418

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R       +  +NSL+ MY++ G V +A  +F  M  RD V++ +LI+G+   G G+ A+
Sbjct: 419 REKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAI 478

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           KL   M +  I+PDHVT + VL+ACSH+GL+ EG+  F+ + +     P ++H+ACMVDL
Sbjct: 479 KLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDL 533

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L++AK +I  MP  P + ++ +LL A +IH+  G+GE AA KL E  P+N G Y
Sbjct: 534 LGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNY 593

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+YA+ G W+ + +VR  M+  G++K  G +WV+       F V D S+ Q+++IY
Sbjct: 594 VLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIY 653

Query: 679 PLLGGLTELMKDAGYVVKE 697
            LL  L   MK  G+V  +
Sbjct: 654 KLLAELERKMKRVGFVADK 672


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 197/610 (32%), Positives = 331/610 (54%), Gaps = 37/610 (6%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           K+L   +Q H+  ++LGL +N +L  KL+  YA      ++  + ++   +    WN LI
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHE 206
           + Y ++  Y EA  ++ QM S  +  D+FT  ++ K   E+  +  G+ +H   I     
Sbjct: 97  NGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFV 156

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG---LWKEAFQLF 263
               V N+++SMY K G  + +R++FD+M  R++ SWN +I+ YA  G     +E ++  
Sbjct: 157 SDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFV 216

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            +MQ + V  +  T +++   C   G+ KG  +     R    Y+     V+GL +  H+
Sbjct: 217 KQMQMDEVRPDAYTISSLLPLC--DGD-KGKWDY---GRELHCYIVKNELVLGLDSDVHL 270

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           G                          LI MYSR   +     +F     +++ +W +M+
Sbjct: 271 GC------------------------CLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMI 306

Query: 384 SGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +GY     ++E+  LFR+M    G+EPN V++ S+LP C+  + L  G++ H + +R+ +
Sbjct: 307 NGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKEL 366

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLF 501
            NE + L N+L++MY++ G +  A+ VF+  S  +D ++++S+I+GYG+ G+G+ A+ L+
Sbjct: 367 NNE-VSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 425

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           ++M +  I+PD +T V +LSACS SGLV EG   +  + + YGI P LE FAC+VD+ GR
Sbjct: 426 DKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGR 485

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG L+ A + I  MP  P  ++W  L+    IH +  + E A   L++  PEN   YV I
Sbjct: 486 AGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSI 545

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+YA++  WD +A+VR  M+D  +RK+PGC+W+   N    F V D ++  A  IY +L
Sbjct: 546 SNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINNKTHCFYVADKAHPSATSIYNML 605

Query: 682 GGLTELMKDA 691
             L   M DA
Sbjct: 606 DDLLLTMNDA 615



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 197/427 (46%), Gaps = 54/427 (12%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           ++AF+ F ++     S DV+ D F  + +     ++ AL  GK +H  +I +G   + V+
Sbjct: 106 NEAFQLFNQM----CSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVV 161

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG---FYAEALCVYKQMQS 168
              +++ Y     +  +  + +   IR    WN+LI+ Y   G   F  E     KQMQ 
Sbjct: 162 ANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQM 221

Query: 169 RRIRGDNFTYPSVLKAC-GEMMDVDFGRVVHSCIDACHEWSLFVHN------ALVSMYGK 221
             +R D +T  S+L  C G+    D+GR +H C    +E  L + +       L+ MY +
Sbjct: 222 DEVRPDAYTISSLLPLCDGDKGKWDYGRELH-CYIVKNELVLGLDSDVHLGCCLIDMYSR 280

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE-EGVEVNVITWNT 280
             +V V RR+FD+M  R+  SW  MI+ Y   G   EA  LF +MQ  +G+E N      
Sbjct: 281 SNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPN------ 334

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                                         V+ V  L ACS    L  G++IHG AVR  
Sbjct: 335 -----------------------------RVSLVSVLPACSSFSGLLSGRQIHGFAVRKE 365

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAE-KSIITWNSMLSGYTHLDCAEESAFLF 399
                ++ NALI MYS+C  L  A  +F+  +  K  I+W+SM+SGY      +E+  L+
Sbjct: 366 LNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 425

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M ++G+ P+ +T   IL  C+R   +  G   +  ++        L ++  +V+M  R
Sbjct: 426 DKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGR 485

Query: 460 SGKVPEA 466
           +G++  A
Sbjct: 486 AGQLDPA 492


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  325 bits (832), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 207/626 (33%), Positives = 321/626 (51%), Gaps = 51/626 (8%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           D F  ++  C  +K L   KQ+HA  +   + K    + K+        L + A   V  
Sbjct: 33  DKFNSLLQQCLSIKQL---KQIHAQLLTNSIHKPNSFLYKIA------DLKDFAYASVFF 83

Query: 135 SNIRYPLPW--NLLI-SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
           SNI  P  +  N++I  L       + AL  Y +M+   ++ +N TYP +  AC  ++ V
Sbjct: 84  SNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAV 143

Query: 192 DFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           + GR+ H S I    +    V ++L++MY + G++  AR++FD++ ++D VSWN+MIS Y
Sbjct: 144 ENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGY 203

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           +      EA  LF EM E G + N                              E  L S
Sbjct: 204 SKMRHAGEAVGLFREMMEAGFQPN------------------------------EMSLVS 233

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           V     LGAC  +G LKLG  +    V         + +ALI MY +C DL  A  +F  
Sbjct: 234 V-----LGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDS 288

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             +K  +TWN+M++GY     +EE+  LF++M  S   P+ +T+  IL  CA +  L  G
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG 348

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K+   Y   R  F + + +  +LV+MYA+ G +  A  VF  M  ++EV++ ++I+    
Sbjct: 349 KQVEIYASERG-FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAF 407

Query: 491 QGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            G+ + AL LF+ M      + P+ +T V VLSAC H+GLV EG++ F  M+S +G+ P+
Sbjct: 408 HGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPK 467

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH++CMVDL+ RAG L +A + +  MP  P   +   LLGACQ  +N  I E   + LL
Sbjct: 468 IEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLL 527

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P NSG YV+ + +YA    WD  A++R  M+  GV K PGC+W+D  +    F   D
Sbjct: 528 ELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGD 587

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYV 694
             + +  EI+ +L  L + ++  GY+
Sbjct: 588 VLHQEWIEIHQILDLLIDDLRREGYI 613


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  325 bits (832), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 193/595 (32%), Positives = 305/595 (51%), Gaps = 41/595 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S   ++  CG  +    G  +H   +  GL+    L   LV  Y  F     +  + E  
Sbjct: 179 SLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGM 238

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN  I  ++  G Y + L +++ M  R     + T  S+L A  E+   D GR
Sbjct: 239 PERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGR 298

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   I    E  +FV N+LV M                               YA  G
Sbjct: 299 EVHGYSIKRAMELDIFVANSLVDM-------------------------------YAKFG 327

Query: 255 LWKEAFQLFVEMQEEGVEV-NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
             ++A  +F     E +EV NV++WN +    ++ G       L+ +M+      +S+  
Sbjct: 328 SLEKACAVF-----EKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITL 382

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           V  L ACS + +LK GK+IH  ++R        + NALI MY++C  LR A  +F ++ E
Sbjct: 383 VNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFDLS-E 441

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K  +++N+++ GY+    + ES  LF+++   G+E + ++    L  C  +++ + GKE 
Sbjct: 442 KDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEI 501

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  ++RR + N H  L N+L+ +Y + G +  A  +F+ +  +D  ++ ++I GYG+ G+
Sbjct: 502 HGVLVRRLLSN-HPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQ 560

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A  LF+ M  + +  DHV+ +AVLS CSH GLV  G+K F  M +   + PQ  H+A
Sbjct: 561 IDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLA-QNLEPQQMHYA 619

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVDL GR+G L ++ EII  MP+   S +W  LLGAC+IH N  + ++AA+ L E +PE
Sbjct: 620 CMVDLLGRSGQLTESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPE 679

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           +SGYY ++ NMYA  G W++  K+RT M+   V+K P  +WV +GN    FLV D
Sbjct: 680 HSGYYSVLRNMYAEAGRWNEAHKIRTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 734



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 200/439 (45%), Gaps = 40/439 (9%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF--G 194
           +R    WN L           EAL VY  M    +  D+ T+P  L A           G
Sbjct: 36  LRSAFLWNSLSRALSSASLPTEALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAKG 95

Query: 195 RVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             +H+  + + H   +F  N LV+ Y   G    ARR+FD+M  RD VSWN+++S++ + 
Sbjct: 96  LELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLAN 155

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
            ++ +A Q  + M   GV VNV +  ++   C       GV         QE        
Sbjct: 156 KMFDDARQALLSMMRSGVPVNVASLVSVVPAC-------GV--------EQE-------- 192

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                     G   LG  +HG  ++       N+ NAL+ MY +   +  +  +F+   E
Sbjct: 193 ----------GGFGLG--VHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPE 240

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           ++ ++WNS +  + +     +   LFR M   G  P  +T++S+LP    +     G+E 
Sbjct: 241 RNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREV 300

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H Y ++RAM    + + NSLV+MYA+ G + +A +VF+ +  R+ V++ ++IA     G 
Sbjct: 301 HGYSIKRAM-ELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGA 359

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A  L  +M K+   P+ +T+V +L ACS    +  G KQ    +   G+   L    
Sbjct: 360 ESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTG-KQIHAWSIRTGLMFDLFISN 418

Query: 554 CMVDLYGRAGLLNKAKEII 572
            ++D+Y + G L  A+ I 
Sbjct: 419 ALIDMYAKCGQLRLAQSIF 437



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 28/217 (12%)

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ--HGK 431
           +S   WNS+    +      E+  ++  M RSGV P+  T    L   A  A      G 
Sbjct: 37  RSAFLWNSLSRALSSASLPTEALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAKGL 96

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           E H   LR     + +   N+LV  YA  G   +A+ VFD M  RD V++ SL++ +   
Sbjct: 97  ELHAAALRSGHLAD-VFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSF--- 152

Query: 492 GEGRVALKLFEE-------MNKNQIKPDHVTMVAVLSACSHS-----GLVVEGQKQFERM 539
               +A K+F++       M ++ +  +  ++V+V+ AC        GL V G      +
Sbjct: 153 ----LANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGL 208

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
            SI  +   L      VD+YG+ G +  + ++   MP
Sbjct: 209 DSIVNLGNAL------VDMYGKFGHVEASMKVFEGMP 239


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 189/617 (30%), Positives = 315/617 (51%), Gaps = 42/617 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE----NSNI-R 138
           C  +K L  G ++H   +  G++ +  LV  L+  Y       NA  + E    N  + R
Sbjct: 152 CASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGR 211

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
               WN++I  YV +   + AL ++ +M    I  D+ T   VL  C +++D+  G+ +H
Sbjct: 212 NMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIH 271

Query: 199 SCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
             I     +  + V  AL+ MY K G  + + ++F +                       
Sbjct: 272 GLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNH------------------- 312

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                           N++ W ++   C + G     LE  S       + D V  +  L
Sbjct: 313 ----------------NLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAAL 356

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            ACS +     G  IHG A++  +     V  AL+  Y +C D+ +A  +F   + + ++
Sbjct: 357 RACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLV 416

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +WN+++SG+    CA+E+   FR+M    ++PN VT+A IL +C  ++ +   KE HCY+
Sbjct: 417 SWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYL 476

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           LR   F  + L+ NSL+  YA+ G +  +++VF+ +  R+EVT+ S++ G+G+ G     
Sbjct: 477 LRH-WFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEM 535

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
              FE+M +  IKPDH T  ++LS+CSHSG V  G K F  M   Y + P++E + CMVD
Sbjct: 536 FATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVD 595

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L GRAG LN+A ++I  MP +P   +W +LL +C+ H NT + E  A  + E    + GY
Sbjct: 596 LLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGY 655

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
            VL+AN+Y  +G  +++ +VRT ++ +G++K PGC+W++  N    F+  D S+ ++ +I
Sbjct: 656 RVLLANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGDYSHDRSGDI 715

Query: 678 YPLLGGLTELMKDAGYV 694
           Y  +  L+  MK  GYV
Sbjct: 716 YATIESLSLEMKRVGYV 732



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 132/566 (23%), Positives = 246/566 (43%), Gaps = 66/566 (11%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F  +I   G +  + +GKQ+H   +  G  ++  +   L+  Y       NA  + E   
Sbjct: 42  FPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERME 101

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFG 194
            R  + WN +IS + + G Y ++L ++++M  +      +     + L +C  +  +  G
Sbjct: 102 ERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHG 161

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-----RDAVSWNTMIS 248
             +H   +    +   F+ +AL+ MY K G +  A  +F+++ +     R+   WN MI 
Sbjct: 162 LEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMIL 221

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            Y S      A +LFVEM E G+                                     
Sbjct: 222 GYVSNECLSLALELFVEMLELGISP----------------------------------- 246

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           DS   V+ L  CS +  L +GK+IHG  +     +   V  AL+ MY +C D   +  +F
Sbjct: 247 DSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIF 306

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAE-----ESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           K +   +++ W S++     L+CA+     E+   F E       P+ V + + L  C+ 
Sbjct: 307 KRSQNHNLVMWGSVM-----LNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSF 361

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           ++    G   H + ++   F+  + +  +LV+ Y + G +  A+ VF  +S RD V++ +
Sbjct: 362 LSLKPRGMAIHGFAIKMG-FDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNA 420

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           LI+G+        ALK F +M   QIKP+ VTM  +LS C+H  +++  ++        Y
Sbjct: 421 LISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKE-----VHCY 475

Query: 544 GIFPQLEHFA----CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGI 599
            +    E  A     ++  Y + G ++ ++ +  K+P       W ++L    +H  T  
Sbjct: 476 LLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLP-VRNEVTWNSILLGFGMHGRTDE 534

Query: 600 GEWAAEKLLET--RPENSGYYVLIAN 623
                EK+ E   +P++  +  L+++
Sbjct: 535 MFATFEKMKEANIKPDHGTFTSLLSS 560



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 202/454 (44%), Gaps = 47/454 (10%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY-PSVLKACGEMMDVDFGRVVHS-CI 201
           N +I     DGF+ +A+ VY          + F + P ++KA G + DV+ G+ +H   +
Sbjct: 7   NRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLL 66

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                  +FV N+L+ MY K G    A  +F++M ERD+                     
Sbjct: 67  KFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDS--------------------- 105

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ--ETYLDSVATVIGLGA 319
                         ++WNT+  G  ++G++   L +  RM  +   +Y + VA +  L +
Sbjct: 106 --------------VSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSS 151

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII-- 377
           C+ +  L  G EIHG  V+      E + +ALI MY +C D+++A  +F+   +  ++  
Sbjct: 152 CASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGR 211

Query: 378 ---TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
               WN M+ GY   +C   +  LF EM   G+ P+  T+  +L LC+++ +L  GK+ H
Sbjct: 212 NMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIH 271

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             IL   + ++ + +  +L+EMY + G    +  +F      + V + S++      G  
Sbjct: 272 GLILGLGL-DDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYP 330

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL+ F E   +   PD V ++A L ACS   L   G           G    +     
Sbjct: 331 NEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMA-IHGFAIKMGFDSDVFVGGA 389

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           +VD YG+ G +  A+++   +  T     W  L+
Sbjct: 390 LVDFYGKCGDMEYAQQVFYGLS-TRDLVSWNALI 422



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 5/244 (2%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           A  G  ++A E F+   +     D V+      +  C  +    +G  +H  AI +G + 
Sbjct: 325 AQNGYPNEALEFFSEFMLDCGFPDPVI--LLAALRACSFLSLKPRGMAIHGFAIKMGFDS 382

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           +  +   LV FY        A  +    + R  + WN LIS + ++    EAL  ++ MQ
Sbjct: 383 DVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQ 442

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQV 225
           S++I+ +  T   +L  C  +  +   + VH C    H  E +  V+N+L+S Y K G +
Sbjct: 443 SKQIKPNTVTMACILSVCTHLSVMILCKEVH-CYLLRHWFETNALVNNSLISAYAKCGDI 501

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             +R +F+K+  R+ V+WN+++  +   G   E F  F +M+E  ++ +  T+ ++   C
Sbjct: 502 HSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSC 561

Query: 286 LRTG 289
             +G
Sbjct: 562 SHSG 565



 Score = 45.8 bits (107), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 97/219 (44%), Gaps = 5/219 (2%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  FA      +A +AF  ++      + V  + A I+  C  +  +   K++H   +  
Sbjct: 422 ISGFAQNKCADEALKAFRDMQSKQIKPNTV--TMACILSVCTHLSVMILCKEVHCYLLRH 479

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
             E N ++   L++ YA     +++  + E   +R  + WN ++  +   G   E    +
Sbjct: 480 WFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATF 539

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCI-DACHEWSLFVHNALVSMYGK 221
           ++M+   I+ D+ T+ S+L +C     VD G +  +S + D   E  +  +  +V + G+
Sbjct: 540 EKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGR 599

Query: 222 FGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEA 259
            G ++ A  L   M    D   W +++++  + G  K A
Sbjct: 600 AGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLA 638


>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 192/611 (31%), Positives = 317/611 (51%), Gaps = 50/611 (8%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN +IS  V++G+  +AL ++ +M       +  T  S+L AC  +  +  G+ +H+ I 
Sbjct: 13  WNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHA-IA 71

Query: 203 ACHE--WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
             H    +++V  +++ MY K G  D A ++F K   ++   WN MI+AY ++G  ++A 
Sbjct: 72  LKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVEDAL 131

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM------------------- 301
            L   MQ++G + +VIT+NTI  G  R G      ELLS M                   
Sbjct: 132 GLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLISGF 191

Query: 302 -------------RTQETYLDSV--------------ATVIG-LGACSHVGALKLGKEIH 333
                        R  ++  D                 T+ G L AC+ +     GKEIH
Sbjct: 192 QQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIH 251

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G  +R  +     V +AL+ MY++C D+  A  +F     ++ ++WN++++GY +    E
Sbjct: 252 GYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIYNKQPE 311

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LF EM   G++P+ +T   + P C  +A ++ G+  H Y  +  +      + ++L
Sbjct: 312 EALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASAL 371

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MYA+ G + +AKSVFD    +D   + ++I+ + + G  R A  +F +M    I PDH
Sbjct: 372 IDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPDH 431

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           +T V++LSAC+  GLV EG K F  M   YG+   LEH+ CMV + G AGLL++A + I 
Sbjct: 432 ITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIR 491

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
           +MPY P + MWATLL AC++H N  IGE AA+ L E  P+N+  Y+L++N+Y ++G WD 
Sbjct: 492 QMPYPPDACMWATLLQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSSGMWDF 551

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
              +R+ MR   +  I  C+++  G+    F   ++S+ + +EI      L   M+ +GY
Sbjct: 552 AKNLRSFMRGRKLLTIKECSYLTVGSHICTFKGGESSHPELEEILEAWDKLARKMELSGY 611

Query: 694 VVKEEFCSEEE 704
              +    +EE
Sbjct: 612 FPLDPVFDDEE 622



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 2/208 (0%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  +    QGK++H   +  G E N  +   LV  YA     ++A  +    + R  + W
Sbjct: 238 CADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSW 297

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N L++ Y+ +    EAL ++ +M    ++  + T+  +  ACG++  + FGR +H     
Sbjct: 298 NALMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAK 357

Query: 204 CH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           C   E    + +AL+ MY K G +  A+ +FD  +E+D   WN MISA++  G+ + AF 
Sbjct: 358 CQLDELKNAIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFA 417

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +FV+M+  G+  + IT+ ++   C R G
Sbjct: 418 VFVQMELLGILPDHITFVSLLSACARDG 445



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 159/347 (45%), Gaps = 66/347 (19%)

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM--RTQETYLDSVATVIGLGACSHV 323
           M E G++  V +WN I  GC++ G  +  L++ SRM    ++  + ++A++  L AC+ +
Sbjct: 1   MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASI--LPACTGL 58

Query: 324 GALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            AL+LGK IH  A++ G  G    V  ++I MYS+C    +A  +F     K+   WN M
Sbjct: 59  KALRLGKAIHAIALKHGIVGNVY-VEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEM 117

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++ Y +    E++  L R M + G +P+ +T                             
Sbjct: 118 IAAYVNEGKVEDALGLLRSMQKDGWKPDVIT----------------------------- 148

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-------RRDEVTYTSLIAGYGIQGEGR 495
                  +N+++  +AR+G   +A   F+L+S       + + V++  LI+G+   G   
Sbjct: 149 -------YNTILSGHARNGLKTQA---FELLSEMVQMGLKPNVVSFNVLISGFQQSGLSY 198

Query: 496 VALKLFEEM-------NKNQI-----KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
            ALK+F  M       N N++     +P+ +T+   L AC+   L  +G K+    T   
Sbjct: 199 EALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQG-KEIHGYTLRN 257

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           G  P +   + +VD+Y +   ++ A ++  ++    T + W  L+  
Sbjct: 258 GFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVS-WNALMAG 303



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 115/266 (43%), Gaps = 15/266 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEK-NPVLVPKLVTFYASFSLYNNACFLVEN 134
           +F  +   CG + A+  G+ LH  A    L++    +   L+  YA      +A   V +
Sbjct: 331 TFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDA-KSVFD 389

Query: 135 SNIRYPLP-WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           S +   +P WN +IS +   G    A  V+ QM+   I  D+ T+ S+L AC     V+ 
Sbjct: 390 SEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPDHITFVSLLSACARDGLVEE 449

Query: 194 GRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
           G    + ++  +    +L  +  +V + G  G +D A     +M    DA  W T++ A 
Sbjct: 450 GWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQAC 509

Query: 250 --YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
             +++  + + A +   E++ +    N   +  ++   + +G +     L S MR ++  
Sbjct: 510 RVHSNPEIGERAAKALFELEPD----NATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLL 565

Query: 308 LDSVATVIGLGACSHVGALKLGKEIH 333
                + + +G  SH+   K G+  H
Sbjct: 566 TIKECSYLTVG--SHICTFKGGESSH 589


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 199/629 (31%), Positives = 334/629 (53%), Gaps = 46/629 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE--KNPVLVPKLVTFYASFSLYNNACFLVE 133
           SF ++       +++ +    +   + LG E  K+  +V   ++ YA      ++  + +
Sbjct: 220 SFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFD 279

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVY-KQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +   R    WN +I +YV++    E++ ++ + + S+ I  D  T+     A   +  V+
Sbjct: 280 SCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVE 339

Query: 193 FGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            GR  H  +     E  + + N+L+ MY + G V  +  +F  M ERD VSWNTMISA+ 
Sbjct: 340 LGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFV 399

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             GL  E   L  EMQ++G +++ IT                V  LLS            
Sbjct: 400 QNGLDDEGLMLVYEMQKQGFKIDYIT----------------VTALLS------------ 431

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                  A S++   ++GK+ HG  +R    ++E + + LI MY++   +R +  LF+ +
Sbjct: 432 -------AASNLRNKEIGKQTHGFLIRQGI-QFEGMNSYLIDMYAKSGLIRISQKLFEGS 483

Query: 372 --AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
             AE+   TWNSM+SGYT     EE+  +FR+M    + PN VT+ASILP C++V ++  
Sbjct: 484 GYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDL 543

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK+ H + +R+ + ++++ + ++LV+MY+++G +  A+++F     R+ VTYT++I GYG
Sbjct: 544 GKQLHGFSIRQYL-DQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYG 602

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G  A+ LF  M +  IKPD +  VAVLSACS+SGLV EG K FE M  +Y I P  
Sbjct: 603 QHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSS 662

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKL- 607
           EH+ C+ D+ GR G +N+A E +  +      A +W +LLG+C++H    + E  +E+L 
Sbjct: 663 EHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCRLHGELELAETVSERLA 722

Query: 608 -LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
            L+     SGY VL++NMYA    W  + +VR  MR+ G++K  G + ++     + F+ 
Sbjct: 723 KLDKGKNFSGYEVLLSNMYAEEQNWKSVDRVRKGMREKGLKKEVGRSGIEVAGHVNCFVS 782

Query: 667 DDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
            D  +  + EIY  + GL + M+   ++ 
Sbjct: 783 RDQEHPHSGEIYDAIDGLAKNMRGDSFLT 811



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 143/604 (23%), Positives = 277/604 (45%), Gaps = 60/604 (9%)

Query: 60  FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
           ++R++ TA        +++  +  C + K L  GK +H   I      + V+   L+  Y
Sbjct: 93  YSRMKKTAPFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMY 152

Query: 120 ASFSLYNNA---CF-------LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            S      +   CF       + +N   +  + WN LIS YV+ G  AEA   +  M   
Sbjct: 153 VSCLNAPGSELDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRM 212

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEW--SLFVHNALVSMYGKFGQVD 226
            I+    ++ +V  A      +    V +   +    E+   LFV ++ +SMY + G ++
Sbjct: 213 EIKPSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLE 272

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            +RR+FD  +ER+   WNTMI  Y       E+ +LF+E                     
Sbjct: 273 SSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEA-------------------- 312

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                         + ++E   D V  ++   A S +  ++LG++ HG   +        
Sbjct: 313 --------------IGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIV 358

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           + N+L+ MYSRC  ++ ++ +F    E+ +++WN+M+S +      +E   L  EM + G
Sbjct: 359 IINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQG 418

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
            + +Y+T+ ++L   + + N + GK+ H +++R+ +  E +  +  L++MYA+SG +  +
Sbjct: 419 FKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEGMNSY--LIDMYAKSGLIRIS 476

Query: 467 KSVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           + +F+    + RD+ T+ S+I+GY   G       +F +M +  I+P+ VT+ ++L ACS
Sbjct: 477 QKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACS 536

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
             G V  G KQ    +    +   +   + +VD+Y +AG +  A+ + ++     +    
Sbjct: 537 QVGSVDLG-KQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYT 595

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETR----PENSGYYVLIANMYAATGCWDKLAKVRTC 640
             +LG  Q     G+GE A    L  +      ++  +V + +  + +G  D+  K+   
Sbjct: 596 TMILGYGQ----HGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFED 651

Query: 641 MRDL 644
           MR++
Sbjct: 652 MREV 655



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 216/474 (45%), Gaps = 73/474 (15%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRR--IRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           WN +I  ++ +    EAL  Y +M+      + D +TY S LKAC E  ++  G+ VH  
Sbjct: 73  WNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSSTLKACAETKNLKAGKAVHCH 132

Query: 201 IDAC-HEWSLFVHNALVSMY----GKFG------QVDVARRLFDKMLERDAVSWNTMISA 249
           +  C    S  VHN+L++MY       G      + DV R++FD M  ++ V+WNT+IS 
Sbjct: 133 LIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDNMRRKNVVAWNTLISW 192

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           Y   G   EA + F  M    ++ + ++             F  V   ++  R+    + 
Sbjct: 193 YVKTGRNAEACRQFAIMMRMEIKPSPVS-------------FVNVFPAVATSRS----IK 235

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
                 GL        LKLG E     V+  +     V ++ I+MY+   DL  +  +F 
Sbjct: 236 KANVFYGL-------MLKLGDEY----VKDLF-----VVSSAISMYAELGDLESSRRVFD 279

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQ 428
              E++I  WN+M+  Y   DC  ES  LF E   S  +  + VT        + +  ++
Sbjct: 280 SCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVE 339

Query: 429 HGKEFHCYILRRAMFNE-HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            G++FH ++ +   F E  +++ NSL+ MY+R G V ++  VF  M  RD V++ ++I+ 
Sbjct: 340 LGRQFHGFVSKN--FRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISA 397

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH----------SGLVVEGQKQFE 537
           +   G     L L  EM K   K D++T+ A+LSA S+           G ++    QFE
Sbjct: 398 FVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFE 457

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP-TSAMWATLLGA 590
            M S             ++D+Y ++GL+  ++++     Y     A W +++  
Sbjct: 458 GMNSY------------LIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISG 499


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 194/652 (29%), Positives = 327/652 (50%), Gaps = 53/652 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K F   G   +A + ++R+       D    ++  +I     + +L +GK++HA  I L
Sbjct: 102 IKGFTSCGLYIEAVQFYSRMVFAGVKADTF--TYPFVIKSVAGISSLEEGKKIHAMVIKL 159

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G   +  +   L++ Y       +A  + E    R  + WN +IS Y+  G    +L ++
Sbjct: 160 GFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLF 219

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-------EWSLFVHNALV 216
           K+M     + D F+  S L AC  +     G+ +H     CH          + V  +++
Sbjct: 220 KEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIH-----CHAVRSRIETGDVMVMTSIL 274

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K+G+V  A R+F+ M++R                                   N++
Sbjct: 275 DMYSKYGEVSYAERIFNGMIQR-----------------------------------NIV 299

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
            WN + G   R G          +M  Q      V T I L   S   A+  G+ IHG A
Sbjct: 300 AWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPAS---AILEGRTIHGYA 356

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           +R  +  +  +  ALI MY  C  L+ A ++F   AEK++I+WNS+++ Y        + 
Sbjct: 357 MRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSAL 416

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF+E++ S + P+  TIASILP  A   +L  G+E H YI++   ++  ++L NSLV M
Sbjct: 417 ELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIIL-NSLVHM 475

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA  G + +A+  F+ +  +D V++ S+I  Y + G GR+++ LF EM  +++ P+  T 
Sbjct: 476 YAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTF 535

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
            ++L+ACS SG+V EG + FE M   YGI P +EH+ CM+DL GR G  + AK  + +MP
Sbjct: 536 ASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMP 595

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           + PT+ +W +LL A + H++  I E+AAE++ +   +N+G YVL+ NMYA  G W+ + +
Sbjct: 596 FVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNR 655

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           ++  M   G+ +    + V+A      F   D S+V   +IY +L  ++ ++
Sbjct: 656 IKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMV 707



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 144/526 (27%), Positives = 258/526 (49%), Gaps = 60/526 (11%)

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           +P L   L  F A   L  +A  L +  N      WN++I  +   G Y EA+  Y +M 
Sbjct: 64  DPALTRALRGF-ADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMV 122

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVD 226
              ++ D FTYP V+K+   +  ++ G+ +H+  I       ++V N+L+S+Y K G   
Sbjct: 123 FAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAW 182

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A ++F++M ERD VSWN+MIS Y + G    +  LF EM + G                
Sbjct: 183 DAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCG---------------- 226

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE- 345
               FK                D  +T+  LGACSHV + K+GKEIH  AVR      + 
Sbjct: 227 ----FKP---------------DRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDV 267

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF-R 404
            V  +++ MYS+  ++ +A  +F    +++I+ WN M+  Y       ++   F++M  +
Sbjct: 268 MVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQ 327

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +G++P+ +T  ++LP  A    +  G+  H Y +RR  F  H++L  +L++MY   G++ 
Sbjct: 328 NGLQPDVITSINLLPASA----ILEGRTIHGYAMRRG-FLPHMVLETALIDMYGECGQLK 382

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A+ +FD M+ ++ +++ S+IA Y   G+   AL+LF+E+  + + PD  T+ ++L A +
Sbjct: 383 SAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYA 442

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEIITKMPYT 578
            S  + EG++       I+    +  +++       +V +Y   G L  A++    +   
Sbjct: 443 ESLSLSEGRE-------IHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLK 495

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETR--PENSGYYVLIA 622
              + W +++ A  +H    I  W   +++ +R  P  S +  L+A
Sbjct: 496 DVVS-WNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLA 540


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 188/652 (28%), Positives = 330/652 (50%), Gaps = 36/652 (5%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           GN  +    F  +R +  S   +  + A ++  C     L   + +H  AI +GLE +  
Sbjct: 162 GNAQEGLHLFRLLRASLGSTTRM--TLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVF 219

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   LV  Y+      +A  L +    R  + WN+++  YV+ G   EA  ++ +     
Sbjct: 220 VSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSG 279

Query: 171 IRGDNFTYPSVLKAC--GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
           +R D F+   +L  C      D++ G+ VH   + +  +  + V N+LV+MY K G    
Sbjct: 280 LRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF 339

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR +F+ M   D +SWN+MIS+ A   L +E+  LF+++  EG++ +  T          
Sbjct: 340 AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFT---------- 389

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                               L S+       AC  +  L  GK+IH  A++  +    +V
Sbjct: 390 --------------------LASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHV 429

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            + ++ MY +C D+ +A I+F   +    + W SM+SG       +++  ++  M +S V
Sbjct: 430 NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRV 489

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            P+  T A+++   + V  L+ G++ H  +++    ++   +  SLV+MYA+ G + +A 
Sbjct: 490 MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDP-FVGTSLVDMYAKCGNIEDAY 548

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            +F  M+ R+   + +++ G    G    A+ LF+ M  + I+PD V+ + +LSACSH+G
Sbjct: 549 RLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAG 608

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           L  E  +    M + YGI P++EH++C+VD  GRAGL+ +A ++I  MP+  ++++   L
Sbjct: 609 LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRAL 668

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC+I  +   G+  A +L    P +S  YVL++N+YAA   WD +   R  M+   V+
Sbjct: 669 LGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVK 728

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           K PG +W+D  N+   F+VDD S+ QA  IY  +  + + +++ GYV   EF
Sbjct: 729 KDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEF 780



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 232/518 (44%), Gaps = 47/518 (9%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L  GK  HA  +  G   +  L   L+T Y+     ++A  + + +  R  + WN ++  
Sbjct: 93  LLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGA 152

Query: 150 YV-----RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
           Y       DG   E L +++ +++        T   VLK C     +     VH   I  
Sbjct: 153 YAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI 212

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             EW +FV  ALV++Y K G++  AR LFD M ERD V WN M+  Y   GL KEAFQLF
Sbjct: 213 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 272

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            E    G+  +  +   I  GCL  G                                  
Sbjct: 273 SEFHRSGLRPDEFSVQLILNGCLWAG---------------------------------T 299

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L+LGK++HG AV+       +V N+L+ MYS+      A  +F       +I+WNSM+
Sbjct: 300 DDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMI 359

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL-----PLCARVANLQHGKEFHCYIL 438
           S        EES  LF ++   G++P++ T+ASI        C  +  L  GK+ H + +
Sbjct: 360 SSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAI 419

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
            +A F+  L + + +++MY + G +  A  VF+ +S  D+V +TS+I+G    G    AL
Sbjct: 420 -KAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQAL 478

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +++  M ++++ PD  T   ++ A S    + +G++    +  +  +         +VD+
Sbjct: 479 RIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG-TSLVDM 537

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           Y + G +  A  +  KM      A+W  +L     H N
Sbjct: 538 YAKCGNIEDAYRLFKKMN-VRNIALWNAMLVGLAQHGN 574


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 177/526 (33%), Positives = 299/526 (56%), Gaps = 46/526 (8%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           D   Y ++LK C ++  +  G++VH   +++  +  L + N+L+ MY + G ++ ARRLF
Sbjct: 73  DRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLF 132

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D+M  RD VSW +MI+ YA      +A  LF  M  +G E N  T +++           
Sbjct: 133 DEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSL----------- 181

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNA 350
                                   +  C ++ +   G++IH    +  YG + NV   ++
Sbjct: 182 ------------------------VKCCGYMASYNCGRQIHACCWK--YGCHSNVFVGSS 215

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           L+ MY+RC  L  A ++F     K+ ++WN++++GY      EE+  LF  M R G  P 
Sbjct: 216 LVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPT 275

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW--NSLVEMYARSGKVPEAKS 468
             T +++L  C+ +  L+ GK  H ++++ +   + L+ +  N+L+ MYA+SG + +A+ 
Sbjct: 276 EFTYSALLSSCSSMGCLEQGKWLHAHLMKSS---QKLVGYVGNTLLHMYAKSGSIRDAEK 332

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VFD + + D V+  S++ GY   G G+ A + F+EM +  I+P+ +T ++VL+ACSH+ L
Sbjct: 333 VFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARL 392

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           + EG+  F  M   Y I P++ H+A +VDL GRAGLL++AK  I +MP  PT A+W  LL
Sbjct: 393 LDEGKHYFGLMRK-YNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALL 451

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
           GA ++H+NT +G +AA+++ E  P   G + L+AN+YA+ G W+ +AKVR  M+D GV+K
Sbjct: 452 GASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKK 511

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            P C+WV+  N    F+ +D ++ Q ++I+ +   L + +K+ GYV
Sbjct: 512 EPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYV 557



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 186/392 (47%), Gaps = 39/392 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C ++  L +GK +H   +    + + V+   L+  YA       A  L +    R  + W
Sbjct: 84  CTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSW 143

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-- 201
             +I+ Y ++   ++AL ++ +M S     + FT  S++K CG M   + GR +H+C   
Sbjct: 144 TSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWK 203

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
             CH  ++FV ++LV MY + G +  A  +FDK+  ++ VSWN +I+ YA KG  +EA  
Sbjct: 204 YGCHS-NVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALA 262

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LFV MQ EG      T++ +                                   L +CS
Sbjct: 263 LFVRMQREGYRPTEFTYSAL-----------------------------------LSSCS 287

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            +G L+ GK +H   ++        V N L+ MY++   +R A  +F    +  +++ NS
Sbjct: 288 SMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNS 347

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ML GY      +E+A  F EM R G+EPN +T  S+L  C+    L  GK +   ++R+ 
Sbjct: 348 MLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFG-LMRKY 406

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
                +  + ++V++  R+G + +AKS  + M
Sbjct: 407 NIEPKVSHYATIVDLLGRAGLLDQAKSFIEEM 438



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 3/240 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A     S A   F R+    A  +    + + ++ CCG + +   G+Q+HAC    G  
Sbjct: 150 YAQNDRASDALLLFPRMLSDGAEPNEF--TLSSLVKCCGYMASYNCGRQIHACCWKYGCH 207

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   LV  YA       A  + +    +  + WN LI+ Y R G   EAL ++ +M
Sbjct: 208 SNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRM 267

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q    R   FTY ++L +C  M  ++ G+ +H+  + +  +   +V N L+ MY K G +
Sbjct: 268 QREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSI 327

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A ++FDK+++ D VS N+M+  YA  GL KEA Q F EM   G+E N IT+ ++   C
Sbjct: 328 RDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTAC 387



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 118/273 (43%), Gaps = 44/273 (16%)

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           +EP+     ++L  C ++  L+ GK  H ++L  + F   L++ NSL+ MYAR G +  A
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVL-NSNFKHDLVIQNSLLFMYARCGSLEGA 128

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + +FD M  RD V++TS+I GY        AL LF  M  +  +P+  T+ +++  C + 
Sbjct: 129 RRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYM 188

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM----------- 575
                G +Q       YG    +   + +VD+Y R G L +A  +  K+           
Sbjct: 189 ASYNCG-RQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNAL 247

Query: 576 -----------------------PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
                                   Y PT   ++ LL +C        G+W    L+++  
Sbjct: 248 IAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQ 307

Query: 613 ENSGYY-VLIANMYAATG-------CWDKLAKV 637
           +  GY    + +MYA +G        +DKL KV
Sbjct: 308 KLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKV 340


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 188/565 (33%), Positives = 306/565 (54%), Gaps = 20/565 (3%)

Query: 140 PLPWNLLISLYVRD----GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           PLP +++ +  +RD    G     +  Y++++    R D  ++P +LKA  ++  +  G 
Sbjct: 75  PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H         S  FV   L+ MY   G+++ AR +FD+M +RD V+WNTMI  Y   G
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG 194

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK---GVLELL--SRMRTQETYLD 309
           L  EAF+LF EM++  V  + +    I   C RTGN +    + + L  + +R     L 
Sbjct: 195 LLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLT 254

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           ++ T+     C  + A++  +++   +VR  +     V  A+++ YS+   L  A ++F 
Sbjct: 255 ALVTMYAGAGCMDM-AMEFFRKM---SVRNLF-----VSTAMVSGYSKAGRLDDARVIFD 305

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
            T  K ++ W +M+S Y   D  +E+  +F EM  SG++P+ VT+ S++  C  +  L  
Sbjct: 306 QTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDK 365

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
            K  H Y     +    L + N+L+ MYA+ G +  A+ VF+ M  R+ V+++S+I  + 
Sbjct: 366 AKWVHRYTHLNGL-ESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFA 424

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
           + GE   +L LF +M +  ++P+ VT V VL  CSHSGLV EG+K F  MT  Y I P++
Sbjct: 425 MHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKI 484

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH+ CMVDL+GRA LL +A E+I  MP  P   +W +L+ AC++H    +GE AA+++L+
Sbjct: 485 EHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILK 544

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             P++ G  VL++N+YA    WD +  +R  M    V K  G + +D       FL+ D 
Sbjct: 545 LEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDK 604

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYV 694
            + Q+ EIY  L  +   +K AGYV
Sbjct: 605 RHKQSNEIYTKLYEVVSKLKLAGYV 629



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 126/513 (24%), Positives = 227/513 (44%), Gaps = 76/513 (14%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L+D +  G        + RIR      D +  SF  I+    KV AL +G +LH  A  +
Sbjct: 86  LRDLSRSGEPRATILFYQRIRHVGGRFDRI--SFPPILKAVSKVSALFEGMELHGFAFKI 143

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
               +P +   L+  YA+    N A  + +  + R  + WN +I  Y R G   EA  ++
Sbjct: 144 ATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLF 203

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS------------------------ 199
           ++M+   +  D     +++ ACG   ++ + R ++                         
Sbjct: 204 EEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGA 263

Query: 200 -CIDACHEW-------SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            C+D   E+       +LFV  A+VS Y K G++D AR +FD+   +D V W TMISAYA
Sbjct: 264 GCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYA 323

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                +EA ++F EM   G++ +V+T  ++   C+  G         ++   + T+L+ +
Sbjct: 324 ESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDK-----AKWVHRYTHLNGL 378

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
            +V+                               + NALI MY++C  L  A  +F+  
Sbjct: 379 ESVLP------------------------------IDNALINMYAKCGGLDAARDVFEKM 408

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             +++++W+SM++ +     A +S  LF +M +  VEPN VT   +L  C+    ++ GK
Sbjct: 409 PTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGK 468

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSLIAGYGI 490
           +    +         +  +  +V+++ R+  + EA  V + M     V  + SL++   +
Sbjct: 469 KIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRV 528

Query: 491 QGEGRVALKLFEEMNKN--QIKPDHVTMVAVLS 521
            GE    L+L E   K   +++PDH   + ++S
Sbjct: 529 HGE----LELGELAAKRILKLEPDHDGALVLMS 557


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 197/660 (29%), Positives = 330/660 (50%), Gaps = 46/660 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  CG V AL  G++ H  A+ +GL+ +  +   L+  Y       +A  L +  
Sbjct: 144 TLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGM 203

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF-- 193
                + +  ++    + G   +AL ++ +M    IR D     SVL AC +    D+  
Sbjct: 204 PSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNV 263

Query: 194 ------GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
                  + +H+  +         V N+LV +Y K  ++D A ++F+ +     VSWN +
Sbjct: 264 ARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNIL 323

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVN-------------------------------V 275
           I+ Y   G ++ A ++   MQE G E N                               V
Sbjct: 324 ITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSV 383

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            TWNT+  G  +    +  ++L  RM+ Q    D     + L +CS +G  +LGK++H +
Sbjct: 384 TTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSA 443

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           +VR        V + LI +YS+C  +  A I+F M  E+ ++ WNSM+SG      +EE+
Sbjct: 444 SVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEA 503

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
               ++M  +G+ P   + AS++ LCAR++++  G++ H  +L+   +++++ +  SL++
Sbjct: 504 FDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDG-YDQNVYVGCSLID 562

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+SG + +A+  F+ M  ++ V +  +I GY   G G  A++LFE M   + KPD VT
Sbjct: 563 MYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVT 622

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            +AVL+ CSHSGLV E    F  M S YGI P +EH+ C++D   RA    + + +I KM
Sbjct: 623 FIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKM 682

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           PY     +W  LL AC +H N  +GE++A+ L    P+N   YVL++N+YA  G     +
Sbjct: 683 PYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDAS 742

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT--SNVQAQEIYPLLG---GLTELMKD 690
            VR  M   GV K  G +WV+  +    F+V D   ++V  + ++   G   G+TE+  D
Sbjct: 743 AVRALMSSRGVVKGRGYSWVNHKDGSRAFMVADDLGTDVGERTMFSDNGDTSGMTEVHID 802



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 146/582 (25%), Positives = 233/582 (40%), Gaps = 121/582 (20%)

Query: 85  GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL------------------YN 126
           G+  + +  K  HA  +A GL  +  L+ +LV  Y+   L                  YN
Sbjct: 21  GRKPSRSNAKAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYN 80

Query: 127 NACF-------------LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            A               L+     R  + WN +I+   R G   EAL +Y+ M    +  
Sbjct: 81  AAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAP 140

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
            NFT  SVL ACG +  +D GR  H   +    +   FV N L+ MY K G V  A RLF
Sbjct: 141 TNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLF 200

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D M   + VS+  M+                                   GG  + G   
Sbjct: 201 DGMPSPNEVSFTAMM-----------------------------------GGLAQGGAVD 225

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHV--------GALKLGKEIHGSAVRGCYGEY 344
             L L +RM      +D VA    LGAC+           A++L + IH   VR  +G  
Sbjct: 226 DALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSD 285

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           ++V N+L+ +Y++   +  A  +F+  +  SI++WN +++GY  L C E +  +   M  
Sbjct: 286 QHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQE 345

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           SG EPN VT +++L  C +  +                                    VP
Sbjct: 346 SGFEPNEVTYSNMLASCIKARD------------------------------------VP 369

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A+++FD + +    T+ +L++GYG +   +  + LF  M    ++PD  T+  +LS+CS
Sbjct: 370 SARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCS 429

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
             G    G KQ    +    +   +   + ++D+Y + G +  A  II  M        W
Sbjct: 430 RLGNFELG-KQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIAL-IIFNMMTERDVVCW 487

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETR-----PENSGYYVLI 621
            +++    IH    + E A + L + R     P  S Y  +I
Sbjct: 488 NSMISGLAIH---SLSEEAFDFLKQMRENGMFPTESSYASMI 526


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 197/615 (32%), Positives = 322/615 (52%), Gaps = 22/615 (3%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LHA  +  G  +       L+T YA  +   +A  L +    R    W +LIS + R G 
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNA 214
                 ++++MQ++    + +T  SVLK C    ++  G+ VH+  +    +  + + N+
Sbjct: 371 SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNS 430

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           ++ +Y K    + A RLF+ M E D VSWN MI AY   G  +++  +F  +  +    +
Sbjct: 431 ILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYK----D 486

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
           V++WNTI  G L+ G  +  LE L  M    T   +V   I L   S +  ++LG+++HG
Sbjct: 487 VVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHG 546

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK----------------MTAEKSIIT 378
             ++  +     +R++L+ MY +C  +  A I+ +                   +  I++
Sbjct: 547 MVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVS 606

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W SM+SGY      E+    FR M R  V  +  T+ +I+  CA    L+ G+  H Y+ 
Sbjct: 607 WGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYV- 665

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           ++        + +SL++MY++SG + +A  VF   +  + V +TS+I+GY + G+G  A+
Sbjct: 666 QKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAI 725

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LFEEM    I P+ VT + VL+ACSH+GL+ EG + F  M   Y I P +EH   MVDL
Sbjct: 726 GLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDL 785

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
           YGRAG L K K  I K   +  +++W + L +C++H+N  +G+W +E LL+  P + G Y
Sbjct: 786 YGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAY 845

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++NM A+   WD+ A+VR+ M   GV+K PG +W+   +    F++ D S+ Q  EIY
Sbjct: 846 VLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIY 905

Query: 679 PLLGGLTELMKDAGY 693
             L  L   +K+ GY
Sbjct: 906 SYLDILIGRLKEIGY 920



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/473 (21%), Positives = 192/473 (40%), Gaps = 85/473 (17%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  FA  G+    F  F  ++   A  +    + + ++ CC     L  GK +HA  +  
Sbjct: 362 ISGFARAGSSEMVFNLFREMQAKGACPNQY--TLSSVLKCCSLDNNLQLGKGVHAWMLRN 419

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G++ + VL   ++  Y    ++  A  L E  N    + WN++I  Y+R G   ++L ++
Sbjct: 420 GIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMF 479

Query: 164 KQMQSRRIRGDNFTYPSVLKA---------------CG----------------EMMDVD 192
           +++  + +   N     +L+                CG                 +  V+
Sbjct: 480 RRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVE 539

Query: 193 FGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVAR----------------RLFDKM 235
            GR +H  +     +   F+ ++LV MY K G++D A                 R+  K 
Sbjct: 540 LGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKE 599

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
            +   VSW +M+S Y   G +++  + F  M  E V V++ T  TI              
Sbjct: 600 PKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTI-------------- 645

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                                + AC++ G L+ G+ +H    +  +     V ++LI MY
Sbjct: 646 ---------------------ISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMY 684

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           S+   L  A+++F+ + E +I+ W SM+SGY        +  LF EM   G+ PN VT  
Sbjct: 685 SKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFL 744

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            +L  C+    ++ G  +   +      N  +    S+V++Y R+G + + K+
Sbjct: 745 GVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKN 797


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 203/615 (33%), Positives = 323/615 (52%), Gaps = 44/615 (7%)

Query: 92  QGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           +G+Q+H  AI  GL    V V   L+  YA     ++A  +      +  + WN +I+  
Sbjct: 120 KGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGL 179

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSL 209
            ++  + +A+  Y  M+   +   NF   S L +C  +  +  G+  H   I    +  +
Sbjct: 180 DQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDV 239

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW-KEAFQLFVEMQE 268
            V N L+++Y +  ++   +++F  MLERD VSWNT+I A A  G    EA ++F+EM  
Sbjct: 240 SVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMR 299

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
            G   N +T                             +++ +ATV      S +   KL
Sbjct: 300 AGWSPNRVT-----------------------------FINLLATV------SSLSTSKL 324

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYT 387
             +IH   ++    +   + NAL+  Y +  ++ +   +F +M+  +  ++WNSM+SGY 
Sbjct: 325 SHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYI 384

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH-CYILRRAMFNEH 446
           H +   ++  L   M + G   +  T A++L  CA VA L+ G E H C I  RA     
Sbjct: 385 HNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAI--RACLESD 442

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           +++ ++LV+MY++ G++  A   F+LM  R+  ++ S+I+GY   G G  AL+LF  M  
Sbjct: 443 VVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKL 502

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
           +   PDH+T V VLSACSH GLV EG + F+ MT +YG+ P++EH++CMVDL GRAG L+
Sbjct: 503 SGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELD 562

Query: 567 KAKEIITKMPYTPTSAMWATLLGAC--QIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           K +  I KMP  P   +W T+LGAC     R T +G  AAE L    P+N+  YVL++NM
Sbjct: 563 KIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNM 622

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA+ G W+ +A+ R  MR+  V+K  GC+WV   +    F+  D S+ +   IY  L  L
Sbjct: 623 YASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKEL 682

Query: 685 TELMKDAGYVVKEEF 699
            + ++DAGYV + +F
Sbjct: 683 DKKIRDAGYVPQIKF 697



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 221/491 (45%), Gaps = 52/491 (10%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
            H   +  G + +  L   L+  Y       +A  L +    R  + W  LIS Y ++G 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGE-MMDVDFGRVVH--SCIDACHEWSLFVH 212
             +A  V K+M       + F + S ++AC E M+    GR VH  +     ++  + V 
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L++MY K G +D AR +F  M+++D+VSWN+MI+       +++A + +  M++ G  
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTG-- 199

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
                        L   NF                    A +  L +C+ +G + LG++ 
Sbjct: 200 -------------LMPSNF--------------------ALISALSSCASLGCILLGQQT 226

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           HG  ++       +V N L+ +Y+    L     +F    E+  ++WN+++        +
Sbjct: 227 HGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGAS 286

Query: 393 -EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             E+  +F EM R+G  PN VT  ++L   + ++  +   + H  IL+  + +++ +  N
Sbjct: 287 VSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIE-N 345

Query: 452 SLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRV-ALKLFEEMNKNQI 509
           +L+  Y +SG++   + +F  MS RRDEV++ S+I+GY I  E    A+ L   M +   
Sbjct: 346 ALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGY-IHNELLCKAMDLVWLMMQRGQ 404

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH----FACMVDLYGRAGLL 565
           + D  T   VLSAC+    +  G +          I   LE      + +VD+Y + G +
Sbjct: 405 RLDCFTFATVLSACATVATLECGME-----VHACAIRACLESDVVIGSALVDMYSKCGRI 459

Query: 566 NKAKEIITKMP 576
           + A      MP
Sbjct: 460 DYASRFFNLMP 470



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 182/386 (47%), Gaps = 44/386 (11%)

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            LF+ N L+++Y + G    AR+LFD+M +R+ V+W  +IS Y   G+ ++A  +  EM 
Sbjct: 34  DLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMI 93

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
            EG   N   + +    C                  QE+ L                  +
Sbjct: 94  FEGFLPNRFAFGSAIRAC------------------QESML----------------WRR 119

Query: 328 LGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            G+++HG A+R G       V N LI MY++C D+ HA  +F +  +K  ++WNSM++G 
Sbjct: 120 KGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGL 179

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
               C E++   +  M ++G+ P+   + S L  CA +  +  G++ H   ++  + +  
Sbjct: 180 DQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGL-DMD 238

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG-RVALKLFEEMN 505
           + + N+L+ +YA + ++ E + VF  M  RD+V++ ++I      G     A+++F EM 
Sbjct: 239 VSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMM 298

Query: 506 KNQIKPDHVT---MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +    P+ VT   ++A +S+ S S L      Q   +   Y +         ++  YG++
Sbjct: 299 RAGWSPNRVTFINLLATVSSLSTSKL----SHQIHALILKYNVKDDNAIENALLACYGKS 354

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLL 588
           G +   +EI ++M        W +++
Sbjct: 355 GEMENCEEIFSRMSERRDEVSWNSMI 380



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 4/241 (1%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
            ++S+A E F  +     S + V  +F +++     +       Q+HA  +   ++ +  
Sbjct: 285 ASVSEAIEVFLEMMRAGWSPNRV--TFINLLATVSSLSTSKLSHQIHALILKYNVKDDNA 342

Query: 111 LVPKLVTFYA-SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           +   L+  Y  S  + N        S  R  + WN +IS Y+ +    +A+ +   M  R
Sbjct: 343 IENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQR 402

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVA 228
             R D FT+ +VL AC  +  ++ G  VH+C I AC E  + + +ALV MY K G++D A
Sbjct: 403 GQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYA 462

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            R F+ M  R+  SWN+MIS YA  G    A +LF  M+  G   + IT+  +   C   
Sbjct: 463 SRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHI 522

Query: 289 G 289
           G
Sbjct: 523 G 523



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 8/217 (3%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++  C  V  L  G ++HACAI   LE + V+   LV  Y+     + A       
Sbjct: 410 TFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLM 469

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R    WN +IS Y R G    AL ++ +M+      D+ T+  VL AC  +  VD G 
Sbjct: 470 PVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGF 529

Query: 196 VVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYAS 252
                +   +     V  ++ +V + G+ G++D      +KM ++ + + W T++ A   
Sbjct: 530 EYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCR 589

Query: 253 KG-----LWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
                  L + A ++   M  +     V+  N  A G
Sbjct: 590 GNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASG 626



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 11/161 (6%)

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
           FH  +L+   F+  L L N+L+ +Y R G    A+ +FD M  R+ VT+  LI+GY   G
Sbjct: 22  FHLNVLKHG-FDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNG 80

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               A  + +EM      P+     + + AC  S L     ++  R    Y I   L   
Sbjct: 81  MPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESML----WRRKGRQVHGYAIRTGLNDA 136

Query: 553 AC-----MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
                  ++++Y + G ++ A+ +   M     S  W +++
Sbjct: 137 KVAVGNGLINMYAKCGDIDHARSVFGLM-VDKDSVSWNSMI 176


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 200/620 (32%), Positives = 324/620 (52%), Gaps = 47/620 (7%)

Query: 96  LHACAIALGLEKNPVLVP--KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           LH    +  L + P +     L+  YA  SL + A  + +       + +N LI+ Y   
Sbjct: 60  LHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADR 119

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVH 212
           G    AL ++ +++  R   D FT   V+ ACG+  DV   R +H  +  C ++    V+
Sbjct: 120 GECRPALRLFAEVRELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVN 177

Query: 213 NALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           NA+++ Y + G ++ ARR+F +M E   RD VSWN MI A        EA +LF EM   
Sbjct: 178 NAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRR 237

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G++V++ T  ++                        T    V  ++G            G
Sbjct: 238 GLKVDMFTMASVL-----------------------TAFTCVKDLVG------------G 262

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCK-DLRHAYILFKMTAEKSIITWNSMLSGYTH 388
            + HG  ++  +    +V + LI +YS+C   +     +F+  A   ++ WN+M+SG++ 
Sbjct: 263 MQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQ 322

Query: 389 L-DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
             D +E+  + FREM  +G  P+  +   +   C+ +++   GK+ H   ++  +    +
Sbjct: 323 YEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRV 382

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N+LV MY++ G V +A+ VFD M   + V+  S+IAGY   G    +L+LFE M + 
Sbjct: 383 SVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQK 442

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            I P+ +T +AVLSAC H+G V EGQK F  M   + I P+ EH++CM+DL GRAG L +
Sbjct: 443 DIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKE 502

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A+ II  MP+ P S  WATLLGAC+ H N  +   AA + L+  P N+  YV+++NMYA+
Sbjct: 503 AERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYAS 562

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
              W++ A V+  MR+ GV+K PGC+W++       F+ +DTS+   +EI+  +G +   
Sbjct: 563 AARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRK 622

Query: 688 MKDAGYV--VKEEFCSEEEI 705
           MK AGYV  ++     +EE+
Sbjct: 623 MKQAGYVPDIRWALVKDEEV 642



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 200/422 (47%), Gaps = 13/422 (3%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           T+ ++LKAC    D+  G+ +H+    +    S ++ N    +Y K G +  A+  FD  
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
              +  S+NT+I+AYA   L   A Q+F E+ +     +++++NT+       G  +  L
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQP----DIVSYNTLIAAYADRGECRPAL 126

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            L + +R     LD       + AC     + L +++H   V   Y  Y +V NA++  Y
Sbjct: 127 RLFAEVRELRFGLDGFTLSGVIIACG--DDVGLVRQLHCFVVVCGYDCYASVNNAVLACY 184

Query: 356 SRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
           SR   L  A  +F+   E   +  ++WN+M+          E+  LFREM R G++ +  
Sbjct: 185 SRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMF 244

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-SGKVPEAKSVFD 471
           T+AS+L     V +L  G +FH  +++   F+ +  + + L+++Y++ +G + E + VF+
Sbjct: 245 TMASVLTAFTCVKDLVGGMQFHGMMIKSG-FHGNSHVGSGLIDLYSKCAGGMVECRKVFE 303

Query: 472 LMSRRDEVTYTSLIAGYG-IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
            ++  D V + ++I+G+   +      +  F EM  N   PD  + V V SACS+     
Sbjct: 304 EIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPS 363

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G++           + ++     +V +Y + G ++ A+ +   MP     ++ + + G 
Sbjct: 364 VGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGY 423

Query: 591 CQ 592
            Q
Sbjct: 424 AQ 425



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 105/213 (49%), Gaps = 8/213 (3%)

Query: 82  FCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP- 140
           F C  VK L  G Q H   I  G   N  +   L+  Y+  +     C  V    I  P 
Sbjct: 253 FTC--VKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKV-FEEIAAPD 309

Query: 141 -LPWNLLISLYVR-DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
            + WN +IS + + +    + +  +++MQ      D+ ++  V  AC  +     G+ VH
Sbjct: 310 LVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVH 369

Query: 199 S-CIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           +  I +   ++ + V+NALV+MY K G V  ARR+FD M E + VS N+MI+ YA  G+ 
Sbjct: 370 ALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVE 429

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            E+ +LF  M ++ +  N IT+  +   C+ TG
Sbjct: 430 VESLRLFELMLQKDIAPNTITFIAVLSACVHTG 462



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 43/238 (18%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVEN 134
           SF  +   C  + + + GKQ+HA AI   +  N V V   LV  Y+     ++A  + + 
Sbjct: 348 SFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDT 407

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
                 +  N +I+ Y + G   E+L +++ M  + I  +  T+ +VL AC         
Sbjct: 408 MPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSAC--------- 458

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-----DAVSWNTMISA 249
             VH+                       G+V+  ++ F+ M ER     +A  ++ MI  
Sbjct: 459 --VHT-----------------------GKVEEGQKYFNMMKERFRIEPEAEHYSCMIDL 493

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
               G  KEA ++   M         I W T+ G C + GN +  ++  +     E Y
Sbjct: 494 LGRAGKLKEAERIIETMP---FNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPY 548


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/604 (31%), Positives = 311/604 (51%), Gaps = 48/604 (7%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYN--NACFLVENSNIRYPLPWNLLISLYV 151
           +QLHA ++   +  +P +  +L+  Y+   + +   A  + +    R  + WN +I  YV
Sbjct: 30  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 89

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
            + F  + + ++ ++    +  DNFT P V+K C  +  V  G+ +H   +       +F
Sbjct: 90  ENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 148

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V  +LV+MY K G++D AR++FD M+++D V WN++I  YA  G    A QLF    EE 
Sbjct: 149 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLF----EEM 204

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
            E +  +W  +  G  + G  +   +L  +M                  C ++ +     
Sbjct: 205 PERDAFSWTVLVDGLSKCGKVESARKLFDQM-----------------PCRNLVSW---- 243

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
                             NA+I  Y +  D   A  LF       ++TWN M++GY    
Sbjct: 244 ------------------NAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNG 285

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
              ++  +F  M + G  P++ T+ S+L   + +A L  G+  H Y+ +   F    +L 
Sbjct: 286 QFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNG-FELDGILG 344

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            SL+EMYA+ G +  A +VF  + ++    +T++I G GI G    AL LF EM K  +K
Sbjct: 345 TSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLK 404

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           P+ +  + VL+AC+H+GLV +G++ F+ M + Y I P LEH+ C+VD+  RAG L +AK 
Sbjct: 405 PNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKN 464

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
            I  MP +P   +W +LLG  + H    IGE+AA++++E  PE  G Y+L++NMYAA+G 
Sbjct: 465 TIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGM 524

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           W+K++ VR  M   G RK PGC+ V+       F+V D S+ Q +EIY  +  + E +K 
Sbjct: 525 WEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKC 584

Query: 691 AGYV 694
            G+V
Sbjct: 585 VGHV 588



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 107/248 (43%), Gaps = 13/248 (5%)

Query: 44  LKDFAGRGNLSKAFEAFTRI-RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           +  +A  G +  A + F  +    A S  V++D  +     CGKV++  +      C   
Sbjct: 185 IDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSK----CGKVESARKLFDQMPC--- 237

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
               +N V    ++  Y     +++A  L     I   + WNL+I+ Y  +G + +A+ +
Sbjct: 238 ----RNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKM 293

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGK 221
           +  M     R  + T  SVL A   +  +  GR +HS ++    E    +  +L+ MY K
Sbjct: 294 FFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAK 353

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ A  +F  + ++    W  +I      G+   A  LF+EM + G++ N I +  +
Sbjct: 354 CGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGV 413

Query: 282 AGGCLRTG 289
              C   G
Sbjct: 414 LNACNHAG 421


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 209/645 (32%), Positives = 333/645 (51%), Gaps = 49/645 (7%)

Query: 63  IRITAASHDVVLDSFAHI-IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYA 120
           + I + S+ V+L +F+   +   G+ K    G+++HA  I  GL  N V +   LV  YA
Sbjct: 378 VGINSDSYVVLLSAFSEFSVLEEGRRK----GREVHAHVIRTGLNDNKVAIGNGLVNMYA 433

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
                 +AC + E    +  + WN LIS   ++    +A   + +M+       NFT  S
Sbjct: 434 KSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLIS 493

Query: 181 VLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD 239
            L +C  +  +  G  +H   +    +  + V NAL+++Y + G      ++F  M E D
Sbjct: 494 TLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYD 553

Query: 240 AVSWNTMISAYA-SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
            VSWN++I A + S+    +A + F++M   G  ++ +T+  I                 
Sbjct: 554 QVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINI----------------- 596

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
                             L A S +   ++  +IH   ++ C  +   + NAL++ Y +C
Sbjct: 597 ------------------LSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC 638

Query: 359 KDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
            ++     +F +M+  +  ++WNSM+SGY H +   ++  L   M + G   +  T A+I
Sbjct: 639 GEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATI 698

Query: 418 LPLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           L  CA VA L+ G E H C I  RA     +++ ++LV+MY++ G++  A   F+LM  R
Sbjct: 699 LSACASVATLERGMEVHACGI--RACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR 756

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           +  ++ S+I+GY   G G  ALKLF  M  +   PDHVT V VLSACSH G V EG + F
Sbjct: 757 NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHF 816

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC--QIH 594
           + M+ +Y + P++EHF+CMVDL GRAG L++  + I  MP  P   +W T+LGAC     
Sbjct: 817 KSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANG 876

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           RNT +G  AAE LLE  P+N+  YVL+ANMYA+   W+ +AK RT M++  V+K  GC+W
Sbjct: 877 RNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSW 936

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           V   +    F+  D  + +   IY  L  L   M+DAGY+ + ++
Sbjct: 937 VTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKY 981



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 124/527 (23%), Positives = 223/527 (42%), Gaps = 67/527 (12%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           CC +     + ++LH  +I  G   N  L   L+  Y       +A  L +  + R  + 
Sbjct: 85  CCSE-----EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVT 139

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM--MDVDFGRVVHSC 200
           W  LIS Y ++G   EA   ++ M       +++ + S L+AC E        G  +H  
Sbjct: 140 WACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGL 199

Query: 201 IDACHEWS-LFVHNALVSMYGK-FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
           I      S + V N L+SMYG      + AR +FD +  R                    
Sbjct: 200 ISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIR-------------------- 239

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ---------ETYLD 309
                          N I+WN+I     R G+     +L S M+ +         E    
Sbjct: 240 ---------------NSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFG 284

Query: 310 SVATVIGLGACSHVG-ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           S+ T     ACS V   L + +++     +  + +   V +AL++ ++R      A  +F
Sbjct: 285 SLITT----ACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIF 340

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
           +    +++++ N ++ G       E +A +F EM +  V  N  +   +L   +  + L+
Sbjct: 341 EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVLE 399

Query: 429 HGK----EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
            G+    E H +++R  + +  + + N LV MYA+SG + +A SVF+LM  +D V++ SL
Sbjct: 400 EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSL 459

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           I+G         A + F  M +    P + T+++ LS+C+  G ++ G+ Q        G
Sbjct: 460 ISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGE-QIHCDGLKLG 518

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGA 590
           +   +     ++ LY   G   +  ++ + MP Y   S  W +++GA
Sbjct: 519 LDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVS--WNSVIGA 563



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 134/603 (22%), Positives = 260/603 (43%), Gaps = 66/603 (10%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH---IIFCCGKVK-ALAQGKQLHACAIA 102
           ++ RG+   A++ F+ ++          + +     I   C  V   L   +Q+ A    
Sbjct: 251 YSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEK 310

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            G  ++  +   LV+ +A F L ++A  + E   +R  +  N L+   V+      A  V
Sbjct: 311 SGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKV 370

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVD----FGRVVHSCI--DACHEWSLFVHNALV 216
           + +M+   +  ++ +Y  +L A  E   ++     GR VH+ +     ++  + + N LV
Sbjct: 371 FHEMKDL-VGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLV 429

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
           +MY K G +  A  +F+ M+E+D+VSWN++IS        ++A + F  M+         
Sbjct: 430 NMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMR--------- 480

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
                     RTG+      L+S                 L +C+ +G + LG++IH   
Sbjct: 481 ----------RTGSMPSNFTLIST----------------LSSCASLGWIMLGEQIHCDG 514

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++       +V NAL+ +Y+          +F +  E   ++WNS++   +  + +   A
Sbjct: 515 LKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQA 574

Query: 397 F-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
              F +M R G   + VT  +IL   + ++  +   + H  +L+  + ++   + N+L+ 
Sbjct: 575 VKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCL-SDDTAIGNALLS 633

Query: 456 MYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
            Y + G++ E + +F  MS  RDEV++ S+I+GY        A+ L   M +   + D  
Sbjct: 634 CYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSF 693

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF----ACMVDLYGRAGLLNKAKE 570
           T   +LSAC+    +  G +         GI   LE      + +VD+Y + G ++ A  
Sbjct: 694 TFATILSACASVATLERGME-----VHACGIRACLESDVVVGSALVDMYSKCGRIDYASR 748

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWA----AEKLLETRPENSGYYVLIANMYA 626
               MP     + W +++     H   G GE A       +L+ +P +   +V + +  +
Sbjct: 749 FFELMPLRNVYS-WNSMISGYARH---GHGEKALKLFTRMMLDGQPPDHVTFVGVLSACS 804

Query: 627 ATG 629
             G
Sbjct: 805 HVG 807



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 146/311 (46%), Gaps = 20/311 (6%)

Query: 329 GKEIHGSAVRGCYGEYENV--RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            +E+H  +++  YG   N+   N LI +Y R  DL  A  LF   + ++++TW  ++SGY
Sbjct: 90  ARELHLQSIK--YGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 147

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV--ANLQHGKEFHCYILRRAMFN 444
           T     +E+   FR+M R+G  PN+    S L  C     +  + G + H  ++ +  + 
Sbjct: 148 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHG-LISKTRYG 206

Query: 445 EHLLLWNSLVEMYARS-GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
             +++ N L+ MY        +A+SVFD +  R+ +++ S+I+ Y  +G+   A  LF  
Sbjct: 207 SDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSS 266

Query: 504 MNKN----QIKPDHVTMVAVL-SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           M K       KP+  T  +++ +ACS     +   +Q        G    L   + +V  
Sbjct: 267 MQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSG 326

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE---NS 615
           + R GL + AK I  +M      +M   ++G  +  +    GE AA+   E +     NS
Sbjct: 327 FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQ----GEAAAKVFHEMKDLVGINS 382

Query: 616 GYYVLIANMYA 626
             YV++ + ++
Sbjct: 383 DSYVVLLSAFS 393


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 174/548 (31%), Positives = 296/548 (54%), Gaps = 50/548 (9%)

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN-- 213
           Y   L +Y QM++  I  +NFT+P V  AC  + ++   R+ H     C  + L + N  
Sbjct: 98  YPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAH-----CEVFKLGLDNDH 152

Query: 214 ----ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
               ++V+MY + G+  VAR++FD++ E+D                              
Sbjct: 153 HTVNSMVTMYFRCGENGVARKVFDEITEKD------------------------------ 182

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATVIGLGACSHVGALKL 328
                +++WN++  G  + G  +  +E+  R+R +  +  D ++ V  LGAC  +G L+L
Sbjct: 183 -----LVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLEL 237

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+ + G  V         + +ALI+MYS+C +L  +  +F     +  ITWN+ +S Y  
Sbjct: 238 GRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQ 297

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
              A+E+  LF  M  +GV+PN VT+ ++L  CA +  L  GK+   Y   R + ++ + 
Sbjct: 298 NGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHD-IF 356

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN- 507
           +  +L++MYA+ G +  A+ VF+ M R+++ ++ ++I+     G+ + AL LFE M+   
Sbjct: 357 VATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEG 416

Query: 508 -QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
              +P+ +T V++LSAC H+GLV EG + F+ M++++G+ P++EH++CMVDL  RAG L 
Sbjct: 417 GSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLY 476

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A ++I KMP  P +     L  ACQ  +N  IGE   + LLE  P NSG Y++ + +Y 
Sbjct: 477 EAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYE 536

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
               WD  A++R  MR+ GV K PGC+W++ GN    FL  D   + + ++  ++  L E
Sbjct: 537 NLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYE 596

Query: 687 LMKDAGYV 694
            +K  GY+
Sbjct: 597 ELKKEGYL 604



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 191/419 (45%), Gaps = 50/419 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +   C  ++ +   +  H     LGL+ +   V  +VT Y        A  + +  
Sbjct: 119 TFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEI 178

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG 194
             +  + WN L+S Y + GF  EA+ V+ +++       D  +  SVL ACGE+ D++ G
Sbjct: 179 TEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELG 238

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R V    ++   + + ++ +AL+SMY K G++  +RR+FD M  RD ++WN  ISAYA  
Sbjct: 239 RWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQN 298

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G+  EA  LF  M+E GV+ N +T   +                                
Sbjct: 299 GMADEAISLFHSMKENGVDPNKVTLTAV-------------------------------- 326

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC+ +GAL LGK++   A          V  ALI MY++C  L  A  +F     
Sbjct: 327 ---LSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPR 383

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGK 431
           K+  +WN+M+S       A+E+  LF  M   G    PN +T  S+L  C     +  G 
Sbjct: 384 KNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEG- 442

Query: 432 EFHCYILRRAMFN-----EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSL 484
            +  + +   +F      EH   ++ +V++ +R+G + EA  V + M  + D VT  +L
Sbjct: 443 -YRLFDMMSTLFGLVPKIEH---YSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGAL 497


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 203/621 (32%), Positives = 324/621 (52%), Gaps = 45/621 (7%)

Query: 71  DVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA 128
           +VV D +  + ++  C  +  L  GKQ+HA  +  G EK+  L+  L+  Y        A
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAA 303

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             L +    +  + W  L+S Y ++  + EA+ ++  M    ++ D F   S+L +C  +
Sbjct: 304 HKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASL 363

Query: 189 MDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
             ++FG  VH+  I A      +V N+L+ MY K   +  AR++FD     D V +N MI
Sbjct: 364 HALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMI 423

Query: 248 SAYASKGL-WK--EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
             Y+  G  W+  +A  +F +M+   +  +++T+ ++                       
Sbjct: 424 EGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSL----------------------- 460

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                       L A + + +L L K+IHG   +          +ALI +YS C  L+ +
Sbjct: 461 ------------LRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDS 508

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
            ++F     K ++ WNSM SGY      EE+  LF E+  S   P+  T   ++     +
Sbjct: 509 RLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNL 568

Query: 425 ANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           A+LQ G+EFHC +L+R +  N ++   N+L++MYA+ G   +A   FD  + RD V + S
Sbjct: 569 ASLQLGQEFHCQLLKRGLECNPYIT--NALLDMYAKCGSPEDAHKAFDSAASRDVVCWNS 626

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +I+ Y   GEGR AL++ E+M    I+P+++T V VLSACSH+GLV +G KQFE M   +
Sbjct: 627 VISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-F 685

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           GI P+ EH+ CMV L GRAG LN+A+E+I KMP  P + +W +LL  C    N  + E+A
Sbjct: 686 GIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYA 745

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
           AE  + + P++SG + L++N+YA+ G W    KVR  M+  GV K PG +W++       
Sbjct: 746 AEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHI 805

Query: 664 FLVDDTSNVQAQEIYPLLGGL 684
           FL  D S+ +A +IY +L  L
Sbjct: 806 FLSKDKSHCKANQIYEVLDDL 826



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 220/490 (44%), Gaps = 50/490 (10%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           +H   I  GLE +  L   L+  Y+       A  + E    R  + W+ ++S     GF
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125

Query: 156 YAEALCVYKQM-QSRRIRGDNFTYPSVLKAC------GEMMDVDFGRVVHSCIDACHEWS 208
           Y E+L V+    ++R+   + +   S ++AC      G  M       +   + +  +  
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFL---VKSRFDRD 182

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           ++V   L+  Y K G +D AR +FD + E+  V                           
Sbjct: 183 VYVGTLLIDFYLKEGNIDYARLVFDALPEKSTV--------------------------- 215

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                   TW T+  GC++ G     L+L  ++       D       L ACS +  L+ 
Sbjct: 216 --------TWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEG 267

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GK+IH   +R  + +  ++ N LI  Y +C  +R A+ LF     K+II+W ++LSGY  
Sbjct: 268 GKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQ 327

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               +E+  LF  M + G++P+    +SIL  CA +  L+ G + H Y ++  + N+  +
Sbjct: 328 NSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYV 387

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY---GIQGEGRVALKLFEEMN 505
             NSL++MYA+   + EA+ VFD+ +  D V + ++I GY   G Q E   AL +F +M 
Sbjct: 388 T-NSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMR 446

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
              I+P  +T V++L A S S   +   KQ   +   +G+   +   + ++ +Y     L
Sbjct: 447 FRLIRPSLLTFVSLLRA-SASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCL 505

Query: 566 NKAKEIITKM 575
             ++ +  +M
Sbjct: 506 KDSRLVFDEM 515


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 210/662 (31%), Positives = 333/662 (50%), Gaps = 38/662 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G L +A + + R+       DV   +F  ++  CG V     G+++HA  +  G  
Sbjct: 164 YGKSGLLDEALDLYHRMMWAGVRPDVY--TFPCVLRSCGGVPDWRMGREVHAHVLRFGFG 221

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           +   ++  L+T YA       A  + ++  +   + WN +I+ +  +G     L ++  M
Sbjct: 222 EEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTM 281

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
               ++ +  T  SV  A G + DV F + +H                L    G  G V 
Sbjct: 282 LHDEVQPNLMTITSVTVASGLLSDVTFAKEMH---------------GLAVKRGFAGDVA 326

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
                            N++I  YAS G+ ++A  +F  M       + +TW  +  G  
Sbjct: 327 FC---------------NSLIQMYASLGMMRQARTVFSRMDTR----DAMTWTAMISGYE 367

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
           + G     LE+ + M       D +     L AC+ +G+L +G ++H  A    +  Y  
Sbjct: 368 KNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIV 427

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V NA++ MY++ K +  A  +FK   EK +++W+SM++G+       E+ + FR M  + 
Sbjct: 428 VTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-AD 486

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           V+PN VT  + L  CA    L+ GKE H ++LR  +  E  L  N+L+++Y + G+   A
Sbjct: 487 VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLP-NALIDLYVKCGQTGYA 545

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
            + F     +D V++  +IAG+   G G  AL  F +M K    PD VT VA+L ACS  
Sbjct: 546 WAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRG 605

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G+V EG + F  MT  Y I P L+H+ACMVDL  RAG L +A   I +MP TP +A+W  
Sbjct: 606 GMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGA 665

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           LL  C+IHR+  +GE AA+ +L   P ++GY+VL+ ++YA    WDKLA+VR  MR+ G+
Sbjct: 666 LLNGCRIHRHVELGELAAKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGL 725

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIV 706
               GC+WV+   V   FL DD S+ Q +EI  +L G+ E MK +GY   E  C E+E++
Sbjct: 726 DHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKASGYAPVESHCPEDEVL 785

Query: 707 EE 708
           ++
Sbjct: 786 KD 787



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 213/450 (47%), Gaps = 50/450 (11%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIA------LGLEKNPVLVPKLVTFYASFSLYNNA 128
           D++  +   C   +A+  G  L ACA A       GL     ++  LV F  ++  +   
Sbjct: 89  DAYVALFRLCEWRRAVEPG--LRACAHADDRHAWFGLRLGNAMLSMLVRFGETWHAWRVF 146

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             + E    R    WN+++  Y + G   EAL +Y +M    +R D +T+P VL++CG +
Sbjct: 147 AKMPE----RDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGV 202

Query: 189 MDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
            D   GR VH+  +       + V NAL++MY K G V  AR++FD M   D +SWN MI
Sbjct: 203 PDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMI 262

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           + +   G      +LF+ M  + V+ N++T                              
Sbjct: 263 AGHFENGECNAGLELFLTMLHDEVQPNLMT------------------------------ 292

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
           + SV    GL     +  +   KE+HG AV+  +       N+LI MY+    +R A  +
Sbjct: 293 ITSVTVASGL-----LSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTV 347

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F     +  +TW +M+SGY      +++  ++  M  + V P+ +TIAS L  CA + +L
Sbjct: 348 FSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSL 407

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
             G + H  +     F  ++++ N+++EMYA+S ++ +A  VF  M  +D V+++S+IAG
Sbjct: 408 DVGVKLH-ELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAG 466

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           +        AL  F  M  + +KP+ VT +
Sbjct: 467 FCFNHRNFEALYYFRHMLAD-VKPNSVTFI 495



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 214/466 (45%), Gaps = 49/466 (10%)

Query: 159 ALCVYKQM-------QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLF 210
           ALC + Q+       +S     D   Y ++ + C     V+ G    +  D  H W  L 
Sbjct: 65  ALCSHGQLAQALWLLESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLR 124

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + NA++SM  +FG+   A R+F KM ERD                               
Sbjct: 125 LGNAMLSMLVRFGETWHAWRVFAKMPERD------------------------------- 153

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
               V +WN + GG  ++G     L+L  RM       D       L +C  V   ++G+
Sbjct: 154 ----VFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGR 209

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           E+H   +R  +GE  +V NAL+TMY++C D+  A  +F        I+WN+M++G  H +
Sbjct: 210 EVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAG--HFE 267

Query: 391 CAEESAF--LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
             E +A   LF  M    V+PN +TI S+      ++++   KE H   ++R  F   + 
Sbjct: 268 NGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRG-FAGDVA 326

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
             NSL++MYA  G + +A++VF  M  RD +T+T++I+GY   G    AL+++  M  N 
Sbjct: 327 FCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNN 386

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + PD +T+ + L+AC+  G +  G K  E   S  G    +     ++++Y ++  ++KA
Sbjct: 387 VSPDDITIASALAACACLGSLDVGVKLHELAES-KGFISYIVVTNAILEMYAKSKRIDKA 445

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
            E+   M      +  + + G C  HRN     +    L + +P +
Sbjct: 446 IEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNS 491


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 197/653 (30%), Positives = 334/653 (51%), Gaps = 62/653 (9%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           +A ++  C  +  L  G QLHA A+      + ++    +  YA      +A  L + S 
Sbjct: 242 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSE 301

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
                 +N +I+ Y ++    +AL ++ ++ S  +  D  +   V +AC  +  +  G  
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           ++   I +     + V NA + MYGK   +  A R+FD+M  RDAVSWN +I+A+   G 
Sbjct: 362 IYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 421

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             E   LFV M    +E +  T+ ++   C  TG                          
Sbjct: 422 GYETLFLFVSMLRSRIEPDEFTFGSVLKAC--TG-------------------------- 453

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL----FKMT 371
                   G+L  G EIH S V+       +V  +LI MYS+C  +  A  +    F+ T
Sbjct: 454 --------GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRT 505

Query: 372 A----------------EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
                            ++  ++WNS++SGY   + +E++  LF  M   G+ P+  T A
Sbjct: 506 NVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYA 565

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           ++L  CA +A+   GK+ H  ++++ + ++ + + ++LV+MY++ G + +++ +F+   R
Sbjct: 566 TVLDTCANLASAGLGKQIHAQVIKKELQSD-VYISSTLVDMYSKCGDLHDSRLMFEKSLR 624

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RD VT+ ++I GY   G+G  A++LFE M    IKP+HVT +++L AC+H GL+ +G + 
Sbjct: 625 RDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEY 684

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  M   YG+ PQL H++ MVD+ G++G + +A E+I +MP+     +W TLLG C IHR
Sbjct: 685 FYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHR 744

Query: 596 NT-GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           N   + E A   LL   P++S  Y L++N+YA  G W+K++ +R  MR   ++K PGC+W
Sbjct: 745 NNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSW 804

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK---DAGYVVKEEFCSEEE 704
           V+  +    FLV D ++ + +EIY  LG +   MK   D+ +V   E   E++
Sbjct: 805 VELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFDDSSFVPGVEVEEEDQ 857



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/526 (23%), Positives = 236/526 (44%), Gaps = 76/526 (14%)

Query: 84  CGKVKALAQGKQLHACAIALGLE-------------------------------KNPVLV 112
           C K  AL  GKQ HA  I  G                                 ++ V  
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
            K++  YA  +    A F      +R  + WN ++S Y+++G   +++ V+  M      
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARR 230
            D  T+  +LK C  + D   G  +H  +    C +  +   +AL+ MY K  +   + R
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGC-DTDVVAASALLDMYAKGKRFVESLR 194

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +F  + E+++VSW+ +I+      L   A + F EMQ    +VN     +I    LR+  
Sbjct: 195 VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ----KVNAGVSQSIYASVLRS-- 248

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                                        C+ +  L+LG ++H  A++  +     VR A
Sbjct: 249 -----------------------------CAALSELRLGGQLHAHALKSDFAADGIVRTA 279

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
            + MY++C +++ A ILF  +   +  ++N+M++GY+  +   ++  LF  +  SG+  +
Sbjct: 280 TLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFD 339

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            ++++ +   CA V  L  G + +   ++ ++ +  + + N+ ++MY +   + EA  VF
Sbjct: 340 EISLSGVFRACALVKGLSEGLQIYDLAIKSSL-SLDVCVANAAIDMYGKCQALAEAFRVF 398

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           D M RRD V++ ++IA +   G+G   L LF  M +++I+PD  T  +VL AC+   L  
Sbjct: 399 DEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSL-- 456

Query: 531 EGQKQFERMTSIY--GIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
                 E  +SI   G+         ++D+Y + G++ +A++I ++
Sbjct: 457 --GYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 500



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 199/434 (45%), Gaps = 20/434 (4%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA   F R+  +    D +  S + +   C  VK L++G Q++  AI   L  +  +   
Sbjct: 323 KALLLFHRLMSSGLGFDEI--SLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANA 380

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
            +  Y        A  + +    R  + WN +I+ + ++G   E L ++  M   RI  D
Sbjct: 381 AIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPD 440

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
            FT+ SVLKAC     + +G  +HS I  +    +  V  +L+ MY K G ++ A ++  
Sbjct: 441 EFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 499

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           +  +R  VS           G  +E      +M  + ++   ++WN+I  G +     + 
Sbjct: 500 RFFQRTNVS-----------GTMEE----LEKMHNKRLQEMCVSWNSIISGYVMKEQSED 544

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
              L +RM       D       L  C+++ +  LGK+IH   ++        + + L+ 
Sbjct: 545 AQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVD 604

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MYS+C DL  + ++F+ +  +  +TWN+M+ GY H    EE+  LF  M    ++PN+VT
Sbjct: 605 MYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVT 664

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             SIL  CA +  +  G E+   + R    +  L  ++++V++  +SGKV  A  +   M
Sbjct: 665 FISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREM 724

Query: 474 S-RRDEVTYTSLIA 486
               D+V + +L+ 
Sbjct: 725 PFEADDVIWRTLLG 738



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 142/615 (23%), Positives = 252/615 (40%), Gaps = 69/615 (11%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +   G   K+ E F  +       D    +FA I+  C  ++  + G Q+H   + +
Sbjct: 110 LSGYLQNGETLKSIEVFVDMGRAGTEFDG--RTFAIILKVCSCLEDTSLGMQIHGVVVRV 167

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G + + V    L+  YA    +  +  + +    +  + W+ +I+  V++   + AL  +
Sbjct: 168 GCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFF 227

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           K+MQ          Y SVL++C  + ++  G  +H+  + +       V  A + MY K 
Sbjct: 228 KEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKC 287

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             +  A+ LFDK    +  S+N MI+ Y+               QEE             
Sbjct: 288 DNMQDAQILFDKSENLNRQSYNAMITGYS---------------QEE------------- 319

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                   FK +L L  R+ +     D ++      AC+ V  L  G +I+  A++    
Sbjct: 320 ------HGFKALL-LFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLS 372

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V NA I MY +C+ L  A+ +F     +  ++WN++++ +       E+ FLF  M
Sbjct: 373 LDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM 432

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            RS +EP+  T  S+L  C    +L +G E H  I++  M +    +  SL++MY++ G 
Sbjct: 433 LRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNS-SVGCSLIDMYSKCGM 490

Query: 463 VPEAKSVFDLMSRRDE--------------------VTYTSLIAGYGIQGEGRVALKLFE 502
           + EA+ +     +R                      V++ S+I+GY ++ +   A  LF 
Sbjct: 491 IEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFT 550

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M +  I PD  T   VL  C++      G KQ         +   +   + +VD+Y + 
Sbjct: 551 RMMEMGITPDKFTYATVLDTCANLASAGLG-KQIHAQVIKKELQSDVYISSTLVDMYSKC 609

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE----KLLETRPENSGYY 618
           G L+ ++ +  K         W  ++     H   G GE A +     +LE    N   +
Sbjct: 610 GDLHDSRLMFEK-SLRRDFVTWNAMICGYAHH---GKGEEAIQLFERMILENIKPNHVTF 665

Query: 619 VLIANMYAATGCWDK 633
           + I    A  G  DK
Sbjct: 666 ISILRACAHMGLIDK 680



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 198/423 (46%), Gaps = 23/423 (5%)

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           C +   ++ G+  H+  I +    + FV N L+ +Y        A  +FD+M  RD VSW
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 244 NTMISAYA-SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           N MI+ YA S  + K +F  F  M       +V++WN++  G L+ G     +E+   M 
Sbjct: 76  NKMINGYAKSNNMVKASF--FFNMMPVR---DVVSWNSMLSGYLQNGETLKSIEVFVDMG 130

Query: 303 TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDL 361
              T  D     I L  CS +    LG +IHG  VR GC  +     +AL+ MY++ K  
Sbjct: 131 RAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVV-AASALLDMYAKGKRF 189

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
             +  +F+   EK+ ++W+++++G    +    +   F+EM +     +    AS+L  C
Sbjct: 190 VESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 249

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
           A ++ L+ G + H + L ++ F    ++  + ++MYA+   + +A+ +FD     +  +Y
Sbjct: 250 AALSELRLGGQLHAHAL-KSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSY 308

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
            ++I GY  +  G  AL LF  +  + +  D +++  V  AC+    + EG + ++    
Sbjct: 309 NAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYD---- 364

Query: 542 IYGIFPQLEHFACM----VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
              I   L    C+    +D+YG+   L +A  +  +M      + W  ++ A   H   
Sbjct: 365 -LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVS-WNAIIAA---HEQN 419

Query: 598 GIG 600
           G G
Sbjct: 420 GKG 422


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 202/611 (33%), Positives = 310/611 (50%), Gaps = 58/611 (9%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G   HA  + LG   +  +   ++  YA     + A  L E    R    WN +IS   +
Sbjct: 114 GNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWK 173

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVH 212
            G   EA+ ++  M +R I     T+ S                                
Sbjct: 174 SGNETEAVVLFNMMPARNI----ITWTS-------------------------------- 197

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
             +V+ Y K G ++ ARR FD+M ER  VSWN M SAYA K   KEA  LF +M EEG+ 
Sbjct: 198 --MVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGIT 255

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            +  TW      C   G+      +L  +  +   L+S      L   +  G L++ + I
Sbjct: 256 PDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNI 315

Query: 333 HGSAVRGCYGEYENVRNA-----LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
                   + E  + RNA     +I+ Y+R   L  A  LF    ++ +++WNSM++GY 
Sbjct: 316 --------FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYA 367

Query: 388 HLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
               +  S  LF+EM     ++P+ VTIAS+L  C  +  L+    +   I+R       
Sbjct: 368 QNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSY-WVLDIVREKNIKLG 426

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           +  +NSL+ MY++ G V +A  +F  M  RD V++ +LI+G+   G G+ A+KL   M +
Sbjct: 427 ISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEE 486

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             I+PDHVT + VL+ACSH+GL+ EG+  F+ + +     P ++H+ACMVDL GRAG L+
Sbjct: 487 EGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELD 541

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +AK +I  MP  P + ++ +LL A +IH+  G+GE AA KL E  P+N G YVL++N+YA
Sbjct: 542 EAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYA 601

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           + G W+ + +VR  M+  G++K  G +WV+       F V D S+ Q+++IY LL  L  
Sbjct: 602 SFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELER 661

Query: 687 LMKDAGYVVKE 697
            MK  G+V  +
Sbjct: 662 KMKRVGFVADK 672


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 189/608 (31%), Positives = 312/608 (51%), Gaps = 36/608 (5%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
            G  +H   +  G      +   L++FYA  +   +A  + +    R  + WN +I    
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV 211
            +G Y +A+ ++ +M       D+ T  SV+ AC +      G VVH            V
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHG---------YSV 112

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
              L+S                     +    N ++  Y++   W+   ++F  M+++  
Sbjct: 113 RTGLIS---------------------ETSLGNALLDMYSNCSDWRSTNKIFRNMEQK-- 149

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             NV++W  +     R G+F  V  L   M  +    D  A    L A +   +LK GK 
Sbjct: 150 --NVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKS 207

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +HG A+R    E   V NAL+ MY +C  +  A  +F    +K  I+WN+++ GY+  + 
Sbjct: 208 VHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNL 267

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
           A E+  LF EM    + PN VT+A ILP  A +++L+ G+E H Y +RR    ++ +  N
Sbjct: 268 ANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVA-N 325

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +LV+MY + G +  A+ +FD+++ ++ +++T +IAGYG+ G GR A+ LFE+M  + I+P
Sbjct: 326 ALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQP 385

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D  +  A+L ACSHSGL  EG + F  M + + I P+L+H+ACMVDL    G L +A E 
Sbjct: 386 DAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEF 445

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I  MP  P S++W +LL  C+IHRN  + E  AE + E  PEN+GYYVL+AN+YA    W
Sbjct: 446 IETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERW 505

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
           + + K++  +   G+R+  GC+W++       F  ++ ++ Q   I   L  +   M++ 
Sbjct: 506 EAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEE 565

Query: 692 GYVVKEEF 699
           G+  K+++
Sbjct: 566 GHDPKKKY 573



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 201/462 (43%), Gaps = 50/462 (10%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           A  G   KA E F R+ +     D    +   ++  C +      G  +H  ++  GL  
Sbjct: 61  ASNGLYDKAVELFVRMWLEGQELDST--TLLSVMPACVQSHYSFIGGVVHGYSVRTGLIS 118

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
              L   L+  Y++ S + +   +  N   +  + W  +I+ Y R G + +   ++++M 
Sbjct: 119 ETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMG 178

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVD 226
              IR D F   S L A      +  G+ VH   I    E  L V NAL+ MY K G ++
Sbjct: 179 LEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYME 238

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            AR +FD + ++D +SWNT+I  Y+   L  EAF LF EM  +      +  N +   C+
Sbjct: 239 EARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ------LRPNAVTMACI 292

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                         L A + + +L+ G+E+H  AVR  Y E   
Sbjct: 293 ------------------------------LPAAASLSSLERGREMHAYAVRRGYLEDNF 322

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V NAL+ MY +C  L  A  LF M   K++I+W  M++GY       ++  LF +M  SG
Sbjct: 323 VANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSG 382

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH-----LLLWNSLVEMYARSG 461
           ++P+  + ++IL  C+       G  F       AM NEH     L  +  +V++   +G
Sbjct: 383 IQPDAGSFSAILYACSHSGLRDEGWRFF-----NAMRNEHRIEPKLKHYACMVDLLCHTG 437

Query: 462 KVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            + EA    + M    D   + SL+ G  I    ++A K+ E
Sbjct: 438 NLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAE 479


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/618 (30%), Positives = 328/618 (53%), Gaps = 40/618 (6%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N V    L++    +     + +  E +  +  + W   IS +VR+G   EAL ++ +
Sbjct: 115 ERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFR 174

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQ 224
           +    +R ++ T+ SV++ACGE+ D   G  ++   + A  E  L V N+L+++  + G+
Sbjct: 175 LLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGE 234

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +D+ARR+FD+M +RD VSW  ++ AY   G  +EA ++F EM E     N I+W+ +   
Sbjct: 235 IDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPER----NEISWSAMIAR 290

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVAT-VIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
             ++G  +  L+L S+M  QE +  +++     L A + + AL  G  IHG   +    +
Sbjct: 291 YSQSGYAEEALKLFSKM-VQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDK 349

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT---------------- 387
              + ++LI +Y +C       ++F +  EK+++ WNSM+ GY+                
Sbjct: 350 DVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIP 409

Query: 388 ---------------HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
                            +  E+   +F  +  SG  PN  T +S+L  CA +A+L  G  
Sbjct: 410 EKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMN 469

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  I++  +    + +  +L +MYA+ G +  +K VF+ M  ++E+++T +I G    G
Sbjct: 470 VHGKIIKLGI-QYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESG 528

Query: 493 EGRVALKLFEEMNK-NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
               +L LFEEM + +++ P+ + +++VL ACSH GLV +G   F  M  +YGI P+ +H
Sbjct: 529 FAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKH 588

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + C+VDL  R+G L +A+E I  +P+ P +  WA LL  C+ +++  I E  A+KL +  
Sbjct: 589 YTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLA 648

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
             NS  YVL++N+YA+ G W  ++ +R  MR+ G++K  GC+WV+  N    F  +D S+
Sbjct: 649 ENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDGSH 708

Query: 672 VQAQEIYPLLGGLTELMK 689
            Q+ EIY  L  L   MK
Sbjct: 709 SQSNEIYGTLQLLRSEMK 726



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 189/434 (43%), Gaps = 76/434 (17%)

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           L V N ++S Y ++G +  AR LFD+M ER+ VSW+ +IS     G  +E+   F    E
Sbjct: 87  LVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYF----E 142

Query: 269 EGVEVNVITWNTIAGGCLRTG-NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                NV++W     G +R G NF+  L+L  R+       + V     + AC  +G   
Sbjct: 143 RNPFQNVVSWTAAISGFVRNGLNFEA-LKLFFRLLESGVRPNDVTFTSVVRACGELGDFG 201

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITM-------------------------------YS 356
           LG  I G  V+  +  Y +V N+LIT+                               Y 
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
              DLR A  +F    E++ I+W++M++ Y+    AEE+  LF +M + G +PN    A 
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
            L   A +  L  G   H ++ +  + ++ + + +SL+++Y + GK  + + VFDL+  +
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGI-DKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK 380

Query: 477 DEVTYTSLIAGYGIQG-------------------------------EGRVALKLFEEMN 505
           + V + S++ GY I G                               +    L++F  + 
Sbjct: 381 NVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLL 440

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI---YGIFPQLEHFACMVDLYGRA 562
            +   P+  T  +VL AC+    + +G     ++  +   Y IF        + D+Y + 
Sbjct: 441 VSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVG----TALTDMYAKC 496

Query: 563 GLLNKAKEIITKMP 576
           G +  +K++  +MP
Sbjct: 497 GDIGSSKQVFERMP 510



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/344 (20%), Positives = 135/344 (39%), Gaps = 61/344 (17%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L   S+ G +  G  +H   ++  +     +   L+ +Y  C+       + K      +
Sbjct: 28  LKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDL 87

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           +  N M+S Y       ++  LF EM     E N V+                       
Sbjct: 88  VVSNCMISAYVQWGNLVQARLLFDEM----PERNEVS----------------------- 120

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
                        W++L+    + G+V E+   F+    ++ V++T+ I+G+   G    
Sbjct: 121 -------------WSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFE 167

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHF-- 552
           ALKLF  + ++ ++P+ VT  +V+ AC   G        F    SI G+  +   EH+  
Sbjct: 168 ALKLFFRLLESGVRPNDVTFTSVVRACGELG-------DFGLGMSILGLVVKAGFEHYLS 220

Query: 553 --ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
               ++ L  R G ++ A+ +  +M      + W  +L A   +  TG     A ++ + 
Sbjct: 221 VSNSLITLSLRMGEIDLARRVFDRMEKRDVVS-WTAILDA---YVETG-DLREARRIFDE 275

Query: 611 RPENS--GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
            PE +   +  +IA  Y+ +G  ++  K+ + M   G +    C
Sbjct: 276 MPERNEISWSAMIAR-YSQSGYAEEALKLFSKMVQEGFKPNISC 318



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 108/269 (40%), Gaps = 48/269 (17%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           K  E F  + ++  + +    +F+ ++  C  + +L +G  +H   I LG++ +  +   
Sbjct: 431 KVLEVFNTLLVSGQTPNK--STFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTA 488

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ-SRRIRG 173
           L   YA      ++  + E    +  + W ++I      GF  E+L ++++M+ +  +  
Sbjct: 489 LTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAP 548

Query: 174 DNFTYPSVLKACGEMMDVDFG--------RVV--------HSCI-------DACHEWSLF 210
           +     SVL AC     VD G        +V         ++C+          +E   F
Sbjct: 549 NELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEF 608

Query: 211 VHN-----------ALVSMYGKFGQVDVARRLFDK---MLERDAVSWNTMISAYASKGLW 256
           +             AL+S   K+    +A R   K   + E ++  +  + + YAS G W
Sbjct: 609 IRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRW 668

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            +   +   M+E+G++         +GGC
Sbjct: 669 IDVSNIRKLMREKGLKK--------SGGC 689


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/647 (29%), Positives = 331/647 (51%), Gaps = 41/647 (6%)

Query: 49  GRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108
           G+G +  A E F ++ +     D  +   A  +  C  +  L  G+Q H  A  + +E +
Sbjct: 194 GQGGV--ALELFGKMGLDGVRPDRFV--LASAVSACSALGFLEGGRQTHGYAYRIAVETD 249

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             ++  L+  Y   S  + A  L +    R  + W  +I+ Y+++   AEA+ ++ Q+  
Sbjct: 250 ASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQ 309

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
              + D F   S+L +CG +  +  GR VH+  I A  E   +V N+L+ MY K   +  
Sbjct: 310 EGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTE 369

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR +F+ + E DA+S+N MI  Y+                                   R
Sbjct: 370 ARAVFEALAEDDAISYNAMIEGYS-----------------------------------R 394

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
            G+  G +++ S+MR        +  V  LG  S   A++L K+IHG  V+         
Sbjct: 395 LGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYA 454

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            ++LI +YS+   +  A  +F +   + ++ WN+M+ G    +  EE+  LF ++  SG+
Sbjct: 455 GSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGL 514

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN  T  +++ + + + ++ HG++FH  I++    ++H +  N+L++MYA+ G + E +
Sbjct: 515 APNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVS-NALIDMYAKCGFIKEGR 573

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            +F+    +D + + S+I+ Y   G+   AL +F  M    ++P++VT V VLSAC+H+G
Sbjct: 574 LLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAG 633

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG + F+ M + Y I P  EH+A +V+L+GR+G L+ AKE I +MP  P +A+W +L
Sbjct: 634 LVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSL 693

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L AC +  N  IG +A E  L   P +SG  VL++N+YA+ G W    K+R  M   GV 
Sbjct: 694 LSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVV 753

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           K PG +W++       F+     + +A  IY LL  LT ++K+ GY+
Sbjct: 754 KEPGYSWIEVMKEVHTFIARGREHPEADVIYSLLDELTSILKNGGYL 800



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 247/514 (48%), Gaps = 41/514 (7%)

Query: 57  FEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
           F AF R     A ++ +L   A  +  C + +A++ G+Q+H  A+ +GL+ N  +   L+
Sbjct: 100 FAAFQRASGGEAPNEFLL---ASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALI 156

Query: 117 TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
             YA     + A  + +   ++ P+ W  +I+ Y + G    AL ++ +M    +R D F
Sbjct: 157 NLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRF 216

Query: 177 TYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
              S + AC  +  ++ GR  H        E    V NAL+ +Y K  ++ +AR+LFD M
Sbjct: 217 VLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCM 276

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             R+ VSW TMI+ Y       EA  +F ++ +EG + +V    +I              
Sbjct: 277 ENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASI-------------- 322

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                                L +C  + A+  G+++H  A++      E V+N+LI MY
Sbjct: 323 ---------------------LNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMY 361

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++C+ L  A  +F+  AE   I++N+M+ GY+ L     +  +F +M    ++P+ +T  
Sbjct: 362 AKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFV 421

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           S+L + +  + ++  K+ H  I++    +  L   +SL+++Y++   V +AK+VF+LM  
Sbjct: 422 SLLGVSSSQSAIELSKQIHGLIVKSGT-SLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHN 480

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RD V + ++I G     +G  A+KLF ++  + + P+  T VA+++  S    +  GQ Q
Sbjct: 481 RDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQ-Q 539

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           F       G          ++D+Y + G + + +
Sbjct: 540 FHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGR 573



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 221/484 (45%), Gaps = 44/484 (9%)

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           HA A+  G   +  L   L+  Y+      +A  L +    +  + W   IS++ + G  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 157 AEALCVYKQMQSRRIRG----DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFV 211
            +A+ ++   Q  R  G    + F   S L+AC +   V FG+ VH   +    + +++V
Sbjct: 94  EDAVALFAAFQ--RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYV 151

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
             AL+++Y K G +D A  +FD +  +                                 
Sbjct: 152 GTALINLYAKVGCIDAAMLVFDALPVK--------------------------------- 178

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             N +TW  +  G  + G     LEL  +M       D       + ACS +G L+ G++
Sbjct: 179 --NPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQ 236

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
            HG A R       +V NALI +Y +C  L  A  LF     +++++W +M++GY    C
Sbjct: 237 THGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSC 296

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             E+  +F ++ + G +P+    ASIL  C  +A +  G++ H + ++  + ++  +  N
Sbjct: 297 DAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVK-N 355

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL++MYA+   + EA++VF+ ++  D ++Y ++I GY   G+   A+ +F +M    +KP
Sbjct: 356 SLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKP 415

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
             +T V++L   S S   +E  KQ   +    G    L   + ++D+Y +  L+  AK +
Sbjct: 416 SPLTFVSLLGVSS-SQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAV 474

Query: 572 ITKM 575
              M
Sbjct: 475 FNLM 478


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 206/679 (30%), Positives = 326/679 (48%), Gaps = 74/679 (10%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   K    F  + +     D V  + + I+  C  ++ L  GK +H  A+  G+ +N  
Sbjct: 221 GFPQKGLNVFREMVLDGVKPDPV--TVSCILSACSDLQDLKSGKAIHGFALKHGMVENVF 278

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   LV  Y S      A  + +    R  + WN L S YV  GF  + L V+++M    
Sbjct: 279 VSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNG 338

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           ++ D     S+L AC ++ D+  G+ +H   +       +FV  ALV++Y     V  A+
Sbjct: 339 VKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQ 398

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +FD M  R                                   NV+TWN+++   +  G
Sbjct: 399 TVFDLMPHR-----------------------------------NVVTWNSLSSCYVNCG 423

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
             +  L +   M       D V  +  L ACS +  LK GK IHG AVR    E   V N
Sbjct: 424 FPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCN 483

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY-------------THLD------ 390
           AL+++Y++C  +R A ++F +   + + +WN +L+ Y             + ++      
Sbjct: 484 ALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKA 543

Query: 391 -----------CA-----EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
                      C      EE+  +FR+M   G +P+  TI SIL  C+    L+ GKE H
Sbjct: 544 DEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIH 603

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
           CY+ R    +  L   N+LV+MYA+ G +  +++VFD+M  +D  ++ ++I   G+ G G
Sbjct: 604 CYVFRHWK-DWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNG 662

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           + AL LFE+M  + +KPD  T   VLSACSHS LV EG + F  M+  + + P+ EH+ C
Sbjct: 663 KEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTC 722

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           +VD+Y RAG L +A   I +MP  PT+  W   L  C++++N  + + +A+KL E  P  
Sbjct: 723 VVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNG 782

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           S  YV + N+      W + +K+R  M++ G+ K PGC+W   GN    F+  D SN+++
Sbjct: 783 SANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMES 842

Query: 675 QEIYPLLGGLTELMKDAGY 693
            +IY  L  L   +K AGY
Sbjct: 843 DKIYNFLDELFAKIKAAGY 861



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 147/524 (28%), Positives = 246/524 (46%), Gaps = 57/524 (10%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F  +   C   +   + KQ H  A   G+  +  +    +  Y        A  + ++  
Sbjct: 43  FMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLV 102

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + WN L + YV  GF  + L V+++M   +++ +  T  S+L  C ++ D+  G+ 
Sbjct: 103 ARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKE 162

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H   +       +FV +A V+ Y K   V  A+ +FD M  RD                
Sbjct: 163 IHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRD---------------- 206

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                              V+TWN+++   +  G  +  L +   M       D V    
Sbjct: 207 -------------------VVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSC 247

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNALITMYSRCKDLRHAYILFKMTAE 373
            L ACS +  LK GK IHG A++  +G  ENV   NAL+ +Y  C  +R A  +F +   
Sbjct: 248 ILSACSDLQDLKSGKAIHGFALK--HGMVENVFVSNALVNLYESCLCVREAQAVFDLMPH 305

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +++ITWNS+ S Y +    ++   +FREM  +GV+P+ + ++SILP C+++ +L+ GK  
Sbjct: 306 RNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTI 365

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H + ++  M  E + +  +LV +YA    V EA++VFDLM  R+ VT+ SL + Y   G 
Sbjct: 366 HGFAVKHGMV-EDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGF 424

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACS-----HSGLVVEGQKQFERMTSIYGIFPQ 548
            +  L +F EM  N +KPD VTM+++L ACS      SG V+ G          +G+   
Sbjct: 425 PQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHG------FAVRHGMVED 478

Query: 549 LEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +  F C  ++ LY +   + +A+ +   +P+    A W  +L A
Sbjct: 479 V--FVCNALLSLYAKCVCVREAQVVFDLIPHREV-ASWNGILTA 519



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 209/431 (48%), Gaps = 38/431 (8%)

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW 207
           S  +  G   EA+ +Y   ++R I+ D   + +V KAC    D    +  H     C   
Sbjct: 13  SFGIPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVM 72

Query: 208 S-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
           S + + NA +  YGK   V+ ARR+FD ++ RD V+WN++ + Y + G  ++   +F +M
Sbjct: 73  SDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM 132

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
               V+ N +T ++I  G                                   CS +  L
Sbjct: 133 GLNKVKANPLTVSSILPG-----------------------------------CSDLQDL 157

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           K GKEIHG  VR    E   V +A +  Y++C  +R A  +F +   + ++TWNS+ S Y
Sbjct: 158 KSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCY 217

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
            +    ++   +FREM   GV+P+ VT++ IL  C+ + +L+ GK  H + L+  M  E+
Sbjct: 218 VNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMV-EN 276

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           + + N+LV +Y     V EA++VFDLM  R+ +T+ SL + Y   G  +  L +F EM  
Sbjct: 277 VFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGL 336

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
           N +KPD + M ++L ACS    +  G K        +G+   +     +V+LY     + 
Sbjct: 337 NGVKPDPMAMSSILPACSQLKDLKSG-KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVR 395

Query: 567 KAKEIITKMPY 577
           +A+ +   MP+
Sbjct: 396 EAQTVFDLMPH 406


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 195/623 (31%), Positives = 322/623 (51%), Gaps = 38/623 (6%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            + ++  C  +K L  GKQ+H   +  G+  +  +V   + FY           L +   
Sbjct: 245 LSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMV 304

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            +  + W  +I+  +++ F+ +AL ++ +M       D F   SVL +CG ++ ++ GR 
Sbjct: 305 DKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQ 364

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           VH+  I    +   FV N L+ MY K   +  AR++F+ M   D VS+N MI  Y+ +  
Sbjct: 365 VHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDK 424

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EA                                   L+L   MR   +    +  V 
Sbjct: 425 LCEA-----------------------------------LDLFREMRLSLSSPTLLIFVS 449

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            LG  + +  L+L  +IHG  ++      E   +ALI +YS+C  +  A ++F+   +K 
Sbjct: 450 LLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKD 509

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           I+ W +M SGYT     EES  L++ +  S ++PN  T A+++   + +A+L+HG++FH 
Sbjct: 510 IVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHN 569

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            +++   F++   + N+LV+MYA+SG + EA   F   + +D   + S+IA Y   GE  
Sbjct: 570 QVIKMG-FDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAE 628

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL++FE+M    +KP++VT V VLSACSH+GL+  G   F+ M+  +GI P +EH+ CM
Sbjct: 629 KALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQ-FGIEPGIEHYVCM 687

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           V L GRAG L +AKE I KMP    + +W +LL AC++  N  +G +AAE  +   P +S
Sbjct: 688 VSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADS 747

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G YVL++N++A+ G W  + ++R  M   GV K PGC+W++  N    F+  DT++  + 
Sbjct: 748 GSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSA 807

Query: 676 EIYPLLGGLTELMKDAGYVVKEE 698
            I  +L  L   +K  GY+   +
Sbjct: 808 PISLVLDNLLLQIKGFGYMANTD 830



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/534 (24%), Positives = 252/534 (47%), Gaps = 46/534 (8%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            A ++  C +   L    Q+H   +  G  ++  +   L+ FY   +  ++A  L +   
Sbjct: 144 LASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQ 203

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           ++    W  +I+ Y + G    +L ++ QM+   +  D +   SVL AC  +  ++ G+ 
Sbjct: 204 VKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQ 263

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H   + +     + + N  +  Y K  +V + R+LFD+M++++ VSW T+I+       
Sbjct: 264 IHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSF 323

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
            ++A  LFVEM   G       WN  A GC                              
Sbjct: 324 HRDALDLFVEMARMG-------WNPDAFGCTSV--------------------------- 349

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L +C  + AL+ G+++H  A++      + V+N LI MY++C  L  A  +F + A   
Sbjct: 350 -LNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAID 408

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++++N+M+ GY+  D   E+  LFREM  S   P  +   S+L + A + +L+   + H 
Sbjct: 409 LVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHG 468

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I++  +  +     ++L+++Y++  +V +A+ VF+ +  +D V +T++ +GY  Q E  
Sbjct: 469 LIIKYGVSLDE-FAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENE 527

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            +LKL++ +  +++KP+  T  AV++A S+   +  GQ QF       G          +
Sbjct: 528 ESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQ-QFHNQVIKMGFDDDPFVANTL 586

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           VD+Y ++G + +A +      +  T A W +++     H     GE  AEK L+
Sbjct: 587 VDMYAKSGSIEEAHKAFISTNWKDT-ACWNSMIATYAQH-----GE--AEKALQ 632



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 229/487 (47%), Gaps = 44/487 (9%)

Query: 94  KQLHACAIALGLEKNPV-LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           K++H+  +  G  K+ + LV  L+  Y+  +L N+A  L +  + +  + W+ ++S+Y  
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 153 DGFYAEALCVYKQ-MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
                EAL ++ Q M+S   + + +   SV++AC +   ++    +H   +   +   ++
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY 177

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V  +L+  Y K   +D AR LFD +  + + +W T+I+ Y+ +G  + + +LF +M+E  
Sbjct: 178 VCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGH 237

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           V  +    +++   CL     +G                                   GK
Sbjct: 238 VCPDKYVLSSVLSACLMLKFLEG-----------------------------------GK 262

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           +IH   +R       ++ N  I  Y +C  ++    LF    +K++++W ++++G     
Sbjct: 263 QIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNS 322

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
              ++  LF EM R G  P+     S+L  C  +  L+ G++ H Y ++  + N+   + 
Sbjct: 323 FHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDD-FVK 381

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N L++MYA+   + +A+ VF+LM+  D V+Y ++I GY  Q +   AL LF EM  +   
Sbjct: 382 NGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSS 441

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA--CMVDLYGRAGLLNKA 568
           P  +  V++L   S S   +E   Q   +   YG+   L+ FA   ++D+Y +   +  A
Sbjct: 442 PTLLIFVSLL-GVSASLYHLELSNQIHGLIIKYGV--SLDEFAGSALIDVYSKCSRVGDA 498

Query: 569 KEIITKM 575
           + +  ++
Sbjct: 499 RLVFEEI 505



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 152/346 (43%), Gaps = 43/346 (12%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ ++ +  L +A + F  +R++ +S  +++  F  ++     +  L    Q+H   I  
Sbjct: 416 IEGYSRQDKLCEALDLFREMRLSLSSPTLLI--FVSLLGVSASLYHLELSNQIHGLIIKY 473

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G+  +      L+  Y+  S   +A  + E    +  + W  + S Y +     E+L +Y
Sbjct: 474 GVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLY 533

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           K +Q  R++ + FT+ +V+ A   +  +  G+  H+  I    +   FV N LV MY K 
Sbjct: 534 KCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKS 593

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G ++ A + F     +D   WN+MI+ YA  G  ++A Q+F +M  EG++ N +T     
Sbjct: 594 GSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVT----- 648

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                   F GV                      L ACSH G L LG +   S  +  +G
Sbjct: 649 --------FVGV----------------------LSACSHTGLLDLGFDHFDSMSQ--FG 676

Query: 343 EYENVRN--ALITMYSRCKDLRHAY-ILFKMTAEKSIITWNSMLSG 385
               + +   ++++  R   L  A   + KM  +++ + W S+LS 
Sbjct: 677 IEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSA 722



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 84/209 (40%), Gaps = 29/209 (13%)

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHG------KEFHCYILRRAMFNEHLLLWNS 452
           F  +    +EP    I     +   +ANL         K+ H  I+        + L N+
Sbjct: 20  FSTLLHQFLEPRIPPIIEQRKIGRELANLLQSPHIPCCKKIHSKIVVFGFHKHDIFLVNT 79

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE-MNKNQIKP 511
           L+  Y++   V  A  +FD MS ++ VT++S+++ Y        AL LF + M     KP
Sbjct: 80  LLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKP 139

Query: 512 DHVTMVAVLSACSH----------SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           +   + +V+ AC+            GLVV+G           G    +     ++D Y +
Sbjct: 140 NEYILASVVRACTQFGGLNPALQIHGLVVKG-----------GYVQDVYVCTSLIDFYTK 188

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGA 590
              ++ A+ +   +    TS  W T++  
Sbjct: 189 HACIDDARLLFDGLQ-VKTSFTWTTIIAG 216


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 191/584 (32%), Positives = 299/584 (51%), Gaps = 52/584 (8%)

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
           +A  L +   +R  + +N++IS +   G  + A   +     +    D  ++  +L A  
Sbjct: 118 DARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK----DAVSWNGMLAAY- 172

Query: 187 EMMDVDFGRV--VHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
               V  GRV       ++  EW +   NAL+S Y ++G++  AR LFD+M  RD VSWN
Sbjct: 173 ----VRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWN 228

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR-- 302
            M+S YA +G   EA +LF    +     +V TW  +  G  + G  +    +   M   
Sbjct: 229 IMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER 284

Query: 303 ------------TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                        Q   +D    +  +  C +V +                       N 
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW----------------------NT 322

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           ++T Y++   L  A  +F    +K  ++W +ML+ Y+   C+EE+  LF EM R G   N
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
               A +L  CA +A L+ G + H  ++R A +     + N+L+ MY + G + +A++ F
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIR-AGYGVGCFVGNALLAMYFKCGNMEDARNAF 441

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           + M  RD V++ ++IAGY   G G+ AL++F+ M     KPD +T+V VL+ACSHSGLV 
Sbjct: 442 EEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVE 501

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +G   F  M   +G+  + EH+ CM+DL GRAG L +A +++  MP+ P S MW  LLGA
Sbjct: 502 KGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGA 561

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
            +IHRN  +G  AAEK+ E  PEN+G YVL++N+YA++G W    K+R  M + GV+K+P
Sbjct: 562 SRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVP 621

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           G +W++  N    F   D  + + ++IY  L  L   MK AGYV
Sbjct: 622 GFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYV 665



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 195/412 (47%), Gaps = 22/412 (5%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L++ Y  +   + A  L +    R  + WN+++S Y R G   EA  ++     R    D
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----D 254

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            FT+ +V+    +   ++  R V    DA  E +    NA+V+ Y +   +D A+ LF+ 
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRV---FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M  R+  SWNTM++ YA  G+ +EA  +F  M ++    + ++W  +     + G  +  
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEET 367

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L+L   M     +++  A    L  C+ + AL+ G ++HG  +R  YG    V NAL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +C ++  A   F+   E+ +++WN+M++GY      +E+  +F  M  +  +P+ +T+
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLM 473
             +L  C+    ++ G  +   +            +  ++++  R+G++ EA  +  D+ 
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 474 SRRDEVTYTSLIAGYGIQGE---GR-VALKLFEEMNKNQIKPDHVTMVAVLS 521
              D   + +L+    I      GR  A K+FE      ++P++  M  +LS
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFE------LEPENAGMYVLLS 593



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 40/220 (18%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N V    +V  Y    + + A  L      R    WN +++ Y + G   EA  V+  
Sbjct: 283 ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 166 MQSRRIRGDNFTYPSVLKA-------------------CGEMMDVD-FGRVVHSCID--- 202
           M  +    D  ++ ++L A                   CGE ++   F  V+ +C D   
Sbjct: 343 MPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398

Query: 203 -------------ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
                        A +    FV NAL++MY K G ++ AR  F++M ERD VSWNTMI+ 
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 458

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           YA  G  KEA ++F  M+    + + IT   +   C  +G
Sbjct: 459 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSG 498



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 42/243 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++  C  + AL  G QLH   I  G      +   L+  Y       +A    E  
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+ Y R GF  EAL ++  M++   + D+ T   VL AC     V+ G 
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG- 503

Query: 196 VVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
            +       H++ +      +  ++ + G+ G++  A  L   M  E D+  W  ++ A 
Sbjct: 504 -ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGAS 562

Query: 250 ---------------------------------YASKGLWKEAFQLFVEMQEEGV-EVNV 275
                                            YAS G W++A ++ V M+E GV +V  
Sbjct: 563 RIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPG 622

Query: 276 ITW 278
            +W
Sbjct: 623 FSW 625



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%)

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N  +  + R+G+V +A+ +F  M RR   TY +++AGY   G   +A  LF  +     +
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----R 97

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD+ +   +L A + S  + + +  F+ M     +      +  M+  +   GL++ A+ 
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGLVSLARH 152

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
                P    +  W  +L A    RN  + E  A  L  +R E
Sbjct: 153 YFDLAP-EKDAVSWNGMLAAYV--RNGRVEE--ARGLFNSRTE 190



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
            A+++ G+      L  AM       +N+++  Y+ +G++P A S+F  + R D  +Y +
Sbjct: 46  TAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNT 105

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
           L+    +      A  LF+EM       D VT   ++S+ ++ GLV   +  F+
Sbjct: 106 LLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHYFD 155


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 283/523 (54%), Gaps = 6/523 (1%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           Y ++LK C +   +  G+ VH+ I       L++ N L+ MY K G +  A ++FD+M+ 
Sbjct: 122 YLTLLKFCLKQRALKEGKQVHAHIKTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVH 181

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           RD  SWN MIS Y   G +++A  LF +M       +  +W  I  GC++    +  LEL
Sbjct: 182 RDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHNRPEEALEL 237

Query: 298 LSRMRTQETYLDSVATVIGLGACSH-VGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
              M+  +    +  T+    A S  + +L +GK+IHG  +R      E V  +L+ MY 
Sbjct: 238 YRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYG 297

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +C  +  A  +F    E+ +++W +M+  Y      EE   LFR +  S + PN  T A 
Sbjct: 298 KCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAG 357

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L  CA +A    GK+ H Y++R   F+      ++LV MY++ G +  AKSVF+++ + 
Sbjct: 358 VLNACADLAAEDLGKQIHAYMVRVG-FDSFSSAASALVHMYSKCGDIENAKSVFEILPQP 416

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D  ++TSL+ GY   G+   AL  FE + K+  KPD +  + VLSAC+H+GLV +G + F
Sbjct: 417 DLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYF 476

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
             +   +G+   ++H+AC++DL  RAG   +A+ II +MP  P   +WA LLG C+IH N
Sbjct: 477 HSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGN 536

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             + + AA+ L E  PEN   YV +AN+YA+ G   + A +R  M   G+ K PG +W++
Sbjct: 537 LELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIE 596

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
                  F V D S+ +++EI   L  L++ MK+ GYV    F
Sbjct: 597 IRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNF 639



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 139/546 (25%), Positives = 237/546 (43%), Gaps = 101/546 (18%)

Query: 42  ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHA--- 98
           E +    G+  L +A +   RI    AS  + L  F      C K +AL +GKQ+HA   
Sbjct: 93  EAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKF------CLKQRALKEGKQVHAHIK 146

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
            + ++GL     +  +L+  YA      +A  + +    R    WN++IS YV+ G + +
Sbjct: 147 TSGSIGL----YISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEK 202

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGE-------------MMDVDF------------ 193
           A  ++ +M +R    DNF++ +++  C +             M   D+            
Sbjct: 203 ARNLFDKMPNR----DNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSAL 258

Query: 194 -----------GRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
                      G+ +H  I     +    V  +L+ MYGK G ++ AR +FDKM ERD V
Sbjct: 259 AASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVV 318

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SW TMI  Y   G  +E F LF  +    +  N  T             F GV       
Sbjct: 319 SWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFT-------------FAGV------- 358

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
                          L AC+ + A  LGK+IH   VR  +  + +  +AL+ MYS+C D+
Sbjct: 359 ---------------LNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDI 403

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
            +A  +F++  +  + +W S+L GY      +++   F  + +SG +P+ +    +L  C
Sbjct: 404 ENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSAC 463

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVT 480
           A    +  G E+   I  +      +  +  ++++ AR+G+  EA+S+ + M  + D+  
Sbjct: 464 AHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYI 523

Query: 481 YTSLIAGYGIQGE----GRVALKLFEEMNKNQIKPDH-VTMVAVLSACSHSGLVVEGQKQ 535
           + +L+ G  I G      R A  LFE      I+P++  T V + +  + +G+  E    
Sbjct: 524 WAALLGGCRIHGNLELAKRAAKSLFE------IEPENPATYVTLANIYASAGMRAEEANI 577

Query: 536 FERMTS 541
            E M S
Sbjct: 578 RETMDS 583


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/625 (31%), Positives = 321/625 (51%), Gaps = 52/625 (8%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--CFLVENSNIRYPL 141
           C     L++GK+LH   +      +P+ +  L+  Y+  SL +++   F     + +   
Sbjct: 39  CAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNKNVF 98

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
            +N LI+ ++ +     AL +Y QM+   I  D FT+P V++ACG+  D      +H  +
Sbjct: 99  AYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLM 158

Query: 202 -DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
                E  +FV +ALV+ Y KF  V  A R+F+++  RD                     
Sbjct: 159 FKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRD--------------------- 197

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGA 319
                         V+ WN +  G  + G F+  L +  RM      +    TV G L  
Sbjct: 198 --------------VVLWNAMVNGFAQIGRFEEALGVFRRMGGNGV-VPCRYTVTGVLSI 242

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
            S +G    G+ +HG   +  Y     V NALI MY +CK +  A  +F+M  E  I +W
Sbjct: 243 FSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSW 302

Query: 380 NSMLSGYTHLDCAEESAFLF---REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           NS++S   H  C +    L    R M  S V+P+ VT+ ++LP C  +A L HG+E H Y
Sbjct: 303 NSIMS--VHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGY 360

Query: 437 ILRRAMFNEH-------LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           ++   +  E        +LL N+L++MYA+ G + +A+ VF  M  +D  ++  +I GYG
Sbjct: 361 MVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYG 420

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
           + G G  AL +F  M + Q+ P+ ++ V +LSACSH+G+V EG      M S YG+ P +
Sbjct: 421 MHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSI 480

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH+ C++D+  RAG L +A +++  MP+      W +LL AC++H +T + E AA K++E
Sbjct: 481 EHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIE 540

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             P++ G YVL++N+Y   G ++++ + R  M+   V+K PGC+W++  N    F+  D 
Sbjct: 541 LEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELVNGVHVFITGDR 600

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYV 694
           ++ Q + IY  L  LT ++++ GYV
Sbjct: 601 THPQTEYIYAGLNSLTAVLQEHGYV 625



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 27/287 (9%)

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
           R   TY D    +  L +C+H   L  GKE+H   ++  +        +LI MYS+C  +
Sbjct: 22  RGFSTY-DLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLI 80

Query: 362 RHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
            H+  +F       K++  +N++++G+      + +  L+ +M   G+ P+  T   ++ 
Sbjct: 81  DHSLRVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIR 140

Query: 420 LCAR-----VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
            C       V    HG  F      +      + + ++LV  Y +   V EA  VF+ + 
Sbjct: 141 ACGDDDDGFVVTKIHGLMF------KVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELP 194

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            RD V + +++ G+   G    AL +F  M  N + P   T+  VLS  S  G       
Sbjct: 195 VRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMG------- 247

Query: 535 QFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEIITKM 575
            F+   +++G   ++ + +       ++D+YG+   +  A  +   M
Sbjct: 248 DFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMM 294



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 20/193 (10%)

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T  + L  CA  ANL  GKE H ++L+ A F   L +  SL+ MY++   +  +  VF+ 
Sbjct: 31  TCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAI-TSLINMYSKCSLIDHSLRVFNF 89

Query: 473 MSRRDE--VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC--SHSGL 528
            +  ++    Y +LIAG+      + AL L+ +M    I PD  T   V+ AC     G 
Sbjct: 90  PTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGF 149

Query: 529 VVEGQKQFERMTSIYGIF----PQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           VV         T I+G+      +L+ F  + +V+ Y +   + +A  +  ++P      
Sbjct: 150 VV---------TKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVL 200

Query: 583 MWATLLGACQIHR 595
             A + G  QI R
Sbjct: 201 WNAMVNGFAQIGR 213


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/584 (30%), Positives = 305/584 (52%), Gaps = 46/584 (7%)

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENS-NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           P  +  L+  Y+  +    A  +  +  + R    +N +I+ +V +G  A+    YK+M+
Sbjct: 10  PSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMR 69

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVD 226
           S  +  D FT+P V++AC E M+V   R +H C+     E ++FV +ALV+ Y K    +
Sbjct: 70  SVGVMPDKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTE 126

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A ++F+++ ERD                                   V+ WN +  G  
Sbjct: 127 DAEKVFEELPERD-----------------------------------VVLWNAMINGYT 151

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
           + G+    + +  RM  +   L    T   L   + +G +  G+ IHG   +  Y     
Sbjct: 152 KIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVA 211

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V NALI MY +CK    A ++F+M  EK + +WNS++S +   D  + +  LF +M  S 
Sbjct: 212 VSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSR 271

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF----NEHLLLWNSLVEMYARSGK 462
           V P+ +TI ++LP C+ +A L HG+E H Y++   +      + +LL N++++MYA+ G 
Sbjct: 272 VLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGC 331

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A  +FDLM  +D  ++  +I GY + G G  AL +F  M + QIKPD VT V VLSA
Sbjct: 332 MKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSA 391

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSH+G V +G+    RM   +G+ P +EH+ C++D+ GRAG L +A ++  ++P      
Sbjct: 392 CSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLI 451

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPEN--SGYYVLIANMYAATGCWDKLAKVRTC 640
           +W  LLGAC++H N  +G    EK+ +  P++  SG Y+L++++Y   G +++  +VR  
Sbjct: 452 LWMALLGACRLHGNAELGNVVGEKITQLEPKHCGSGSYILMSSLYGVVGRYEEALEVRRT 511

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           M++  V+K PGC+W++  +    F + D ++ +   +   L G 
Sbjct: 512 MKEQNVKKTPGCSWIELKDGLYVFSMGDRTHHELNALINCLCGF 555



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/557 (22%), Positives = 237/557 (42%), Gaps = 69/557 (12%)

Query: 1   MPPSSSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAF 60
           +P S + LI      +Q+E+ +   ++ P +  ++   N +  +  F   G  +  F+ +
Sbjct: 9   LPSSITSLINMYSRCNQMEEAVLV-FRDPYHERNVFAYNAI--IAGFVANGLAADGFQFY 65

Query: 61  TRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA 120
            R+R      D    +F  ++  C +     + +++H C   +GLE N  +   LV  Y 
Sbjct: 66  KRMRSVGVMPDKF--TFPCVVRACCE---FMEVRKIHGCLFKMGLELNVFVGSALVNTYL 120

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
                 +A  + E    R  + WN +I+ Y + G   +A+ V+K+M    I    FT  S
Sbjct: 121 KVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTS 180

Query: 181 VLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD 239
           +L     M D++ GR +H  +    +   + V NAL+ MYGK    + A  +F+ + E+D
Sbjct: 181 ILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKD 240

Query: 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
             SWN++ISA+                                    +  +  G L L  
Sbjct: 241 LFSWNSIISAHE-----------------------------------QCDDHDGTLRLFG 265

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-----VRNALITM 354
           +M       D +     L ACSH+ AL  G+EIHG  +    G+ EN     + NA++ M
Sbjct: 266 KMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDM 325

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y++C  +++A I+F +   K + +WN M+ GY       E+  +F  M  + ++P+ VT 
Sbjct: 326 YAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTF 385

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
             +L  C+    +  G+ F   +         +  +  +++M  R+G + EA  +   + 
Sbjct: 386 VGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIP 445

Query: 475 RRDE-VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             D  + + +L+    + G   +   + E++   Q++P H                  G 
Sbjct: 446 LEDNLILWMALLGACRLHGNAELGNVVGEKI--TQLEPKHC-----------------GS 486

Query: 534 KQFERMTSIYGIFPQLE 550
             +  M+S+YG+  + E
Sbjct: 487 GSYILMSSLYGVVGRYE 503


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/642 (30%), Positives = 322/642 (50%), Gaps = 50/642 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C  +     G+ +H  AI  GL+ +  +   L+  Y   +   +A  +    
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALC--VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             R  + WN +++ Y   G Y  A+   +  QMQ  R+R +  T  ++L    +   +  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 194 GRVVHSC-IDACHEWS----------LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS 242
           G  VH+  I AC   +          + +  AL+ MY K G +  ARR+FD M  R    
Sbjct: 247 GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR---- 302

Query: 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
                                          N +TW+ + GG +          L   M 
Sbjct: 303 -------------------------------NEVTWSALIGGFVLCSRMTQAFLLFKAML 331

Query: 303 TQE-TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
            Q   +L   +    L AC+ +  L++G+++H    +          N+L++MY++   +
Sbjct: 332 AQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 391

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
             A  LF   A K  +++++++SGY     AEE+  +F++M    VEP+  T+ S++P C
Sbjct: 392 DQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 451

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
           + +A LQHG+  H  ++ R + +E   + N+L++MYA+ G++  ++ VF++M  RD V++
Sbjct: 452 SHLAALQHGRCSHGSVIIRGLASE-TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 510

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
            ++IAGYGI G G+ A  LF EMN     PD VT + +LSACSHSGLV+EG+  F  M  
Sbjct: 511 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRH 570

Query: 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGE 601
            YG+ P++EH+ CMVDL  R G L++A E I  MP      +W  LLGAC++++N  +G+
Sbjct: 571 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 630

Query: 602 WAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVF 661
             +  + E  PE +G +VL++N+Y+A G +D+ A+VR   +  G +K PGC+W++     
Sbjct: 631 KVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 690

Query: 662 SPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
             F+  D S+ Q+ EIY  L  +   +K  GY     F  ++
Sbjct: 691 HAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQD 732



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 228/467 (48%), Gaps = 55/467 (11%)

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNAL 215
           A+ L +Y++M   R+  +N+T+P  LKAC  + D   GR +H   I A  +  LFV  AL
Sbjct: 107 ADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTAL 166

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MY K   +  A  +F  M  RD V+WN M++ YA  G++  A    + MQ +      
Sbjct: 167 LDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQ------ 220

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
                                 + R+R   + L ++  ++     +  GAL  G  +H  
Sbjct: 221 ----------------------MHRLRPNASTLVALLPLL-----AQQGALAQGTSVHAY 253

Query: 336 AVRGCYGEYENVRN----------ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
            +R C     N ++          AL+ MY++C  L +A  +F     ++ +TW++++ G
Sbjct: 254 RIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGG 313

Query: 386 YTHLDCAEESAFLFREMFRSG---VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +       ++  LF+ M   G   + P   +IAS L  CA + +L+ G++ H  +L ++ 
Sbjct: 314 FVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHA-LLAKSG 370

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            +  L   NSL+ MYA++G + +A ++FD M+ +D V+Y++L++GY   G    A  +F+
Sbjct: 371 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFK 430

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M    ++PD  TMV+++ ACSH   +  G+     +  I G+  +      ++D+Y + 
Sbjct: 431 KMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI-IRGLASETSICNALIDMYAKC 489

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           G ++ ++++   MP     + W T++    IH   G+G+ A    LE
Sbjct: 490 GRIDLSRQVFNMMPSRDIVS-WNTMIAGYGIH---GLGKEATALFLE 532



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 15/242 (6%)

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLD--CAEESAFLFREMFRSGVEPNYVTIASIL 418
           L  A+ LF       + T+N ++  Y+      A +   L+R M R  V PN  T    L
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
             C+ +A+   G+  H + +  A     L +  +L++MY +   +P+A  +F  M  RD 
Sbjct: 133 KACSALADHHCGRAIHRHAI-HAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191

Query: 479 VTYTSLIAGYGIQG--EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK-- 534
           V + +++AGY   G     VA  L  +M  ++++P+  T+VA+L   +  G + +G    
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251

Query: 535 -------QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
                        S   +   +     ++D+Y + G L  A+ +   MP       W+ L
Sbjct: 252 AYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP-ARNEVTWSAL 310

Query: 588 LG 589
           +G
Sbjct: 311 IG 312



 Score = 43.1 bits (100), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 13/137 (9%)

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA--LKLFEEMNKNQIKPDHVTMV 517
           SG +  A  +FD +   D  TY  LI  Y        A  L L+  M ++++ P++ T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 518 AVLSACS-----HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
             L ACS     H G      +   R     G+   L     ++D+Y +   L  A  I 
Sbjct: 130 FALKACSALADHHCG------RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 183

Query: 573 TKMPYTPTSAMWATLLG 589
             MP     A  A L G
Sbjct: 184 ATMPARDLVAWNAMLAG 200


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 199/635 (31%), Positives = 336/635 (52%), Gaps = 53/635 (8%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLV-EN 134
           FA +I  C        G+ ++   +  G LE +  +  +L+  +   S    + + V + 
Sbjct: 149 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 208

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
              R  + W L+I+ + + G   +A+ ++  M+      D FTY SVL AC E+  +  G
Sbjct: 209 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 268

Query: 195 RVVHS-------CIDACHEWSLFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWN 244
           + +HS        +D C      V  +LV MY K    G VD +R++F++M E + +SW 
Sbjct: 269 KQLHSRVIRLGLALDVC------VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 322

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            +I+AY   G          E  +E +E+    +  +  G +R  +F             
Sbjct: 323 AIITAYVQSG----------ECDKEAIEL----FCKMISGHIRPNHF------------- 355

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                S ++V  L AC ++     G++++  AV+        V N+LI+MY+R   +  A
Sbjct: 356 -----SFSSV--LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 408

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
              F +  EK+++++N+++ GY     +EE+  LF E+  +G+  +  T AS+L   A +
Sbjct: 409 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 468

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
             +  G++ H  +L+   +  +  + N+L+ MY+R G +  A  VF+ M  R+ +++TS+
Sbjct: 469 GAMGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSM 527

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           I G+   G    AL++F +M +   KP+ +T VAVLSACSH G++ EGQK F  M   +G
Sbjct: 528 ITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHG 587

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           I P++EH+ACMVDL GR+GLL +A E I  MP    + +W TLLGAC++H NT +G  AA
Sbjct: 588 IVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 647

Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
           E +LE  P++   Y+L++N++A+ G W  + K+R  M++  + K  GC+W++  N    F
Sbjct: 648 EMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRF 707

Query: 665 LVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            V +TS+ QA +IY  L  L   +K+ GY+   +F
Sbjct: 708 HVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDF 742



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 132/609 (21%), Positives = 278/609 (45%), Gaps = 68/609 (11%)

Query: 28  QPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKV 87
           +P+ N  I ++++          G L  AF     +    A  D  L +++ ++  C + 
Sbjct: 10  EPLKNRLIRQLDV----------GRLHHAFSTLDLMTQQNAPPD--LTTYSILLKSCIRF 57

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYPLPWNLL 146
           +    GK +H   +  GLE + V++  L++ Y+       A  + E   N R  + W+ +
Sbjct: 58  RNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAM 117

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DAC 204
           +S +  +    +A+  +  M       + + + +V++AC        G +++  +     
Sbjct: 118 VSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGY 177

Query: 205 HEWSLFVHNALVSMYGK-FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
            E  + V   L+ M+ K  G +  A ++FDKM ER+ V+W  MI+ +A  G  ++A  LF
Sbjct: 178 LEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLF 237

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           ++M+  G   +  T++++                                   L AC+ +
Sbjct: 238 LDMELSGYVPDRFTYSSV-----------------------------------LSACTEL 262

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK---DLRHAYILFKMTAEKSIITWN 380
           G L LGK++H   +R        V  +L+ MY++C     +  +  +F+   E ++++W 
Sbjct: 263 GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 322

Query: 381 SMLSGYTHL-DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           ++++ Y    +C +E+  LF +M    + PN+ + +S+L  C  +++   G++ + Y ++
Sbjct: 323 AIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 382

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             + + +  + NSL+ MYARSG++ +A+  FD++  ++ V+Y +++ GY    +   A  
Sbjct: 383 LGIASVN-CVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 441

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDL 558
           LF E+    I     T  ++LS  +  G + +G++   R+  + G +   +     ++ +
Sbjct: 442 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL--LKGGYKSNQCICNALISM 499

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE---KLLE--TRPE 613
           Y R G +  A ++  +M      + W +++     H   G    A E   K+LE  T+P 
Sbjct: 500 YSRCGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKH---GFATRALEMFHKMLETGTKPN 555

Query: 614 NSGYYVLIA 622
              Y  +++
Sbjct: 556 EITYVAVLS 564



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 111/242 (45%), Gaps = 24/242 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY-------ASFSLYNNA 128
           +FA ++     + A+ +G+Q+H   +  G + N  +   L++ Y       A+F ++N  
Sbjct: 457 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE- 515

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
              +E+ N+   + W  +I+ + + GF   AL ++ +M     + +  TY +VL AC  +
Sbjct: 516 ---MEDRNV---ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 569

Query: 189 MDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNT 245
             +  G+   + +   H     +  +  +V + G+ G +  A    + M L  DA+ W T
Sbjct: 570 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 629

Query: 246 MISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           ++ A   + +  L + A ++ +E + +     ++  N  A      G +K V+++   M+
Sbjct: 630 LLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA----GQWKDVVKIRKSMK 685

Query: 303 TQ 304
            +
Sbjct: 686 ER 687


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 207/630 (32%), Positives = 333/630 (52%), Gaps = 63/630 (10%)

Query: 71  DVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY-------AS 121
           +VV D +  + ++  C  +  L  GKQ+HA  +  GLE +  L+  L+  Y       A+
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAA 303

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
             L+N     + N NI   + W  L+S Y ++  + EA+ ++  M    ++ D +   S+
Sbjct: 304 HKLFNG----MPNKNI---ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSI 356

Query: 182 LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           L +C  +  + FG  VH+  I A      +V N+L+ MY K   +  AR++FD     D 
Sbjct: 357 LTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADV 416

Query: 241 VSWNTMISAYASKGL-WK--EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           V +N MI  Y+  G  W+  EA  +F +M+   +  +++T+ ++                
Sbjct: 417 VLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSL---------------- 460

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNALITMY 355
                              L A + + +L L K+IHG   +  YG   ++   +ALI +Y
Sbjct: 461 -------------------LRASASLTSLGLSKQIHGLMFK--YGLNLDIFAGSALIDVY 499

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           S C  L+ + ++F     K ++ WNSM +GY      EE+  LF E+  S   P+  T A
Sbjct: 500 SNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFA 559

Query: 416 SILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           +++     +A++Q G+EFHC +L+R +  N ++   N+L++MYA+ G   +A   FD  +
Sbjct: 560 NMVTAAGNLASVQLGQEFHCQLLKRGLECNPYIT--NALLDMYAKCGSPEDAHKAFDSAA 617

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            RD V + S+I+ Y   GEG+ AL++ E+M    I+P+++T V VLSACSH+GLV +G K
Sbjct: 618 SRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLK 677

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           QFE M   +GI P+ EH+ CMV L GRAG LNKA+E+I KMP  P + +W +LL  C   
Sbjct: 678 QFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKA 736

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            N  + E AAE  + + P++SG + +++N+YA+ G W +  KVR  M+  GV K PG +W
Sbjct: 737 GNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSW 796

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           +        FL  D S+ +A +IY +L  L
Sbjct: 797 IGINKEVHIFLSKDKSHCKANQIYEVLDDL 826



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 137/546 (25%), Positives = 237/546 (43%), Gaps = 57/546 (10%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           +H   I  GLE +  L   L+  Y+       A  + E    R  + W+ ++S     G 
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 156 YAEALCVYKQM-QSRRIRGDNFTYPSVLKAC------GEMMDVDFGRVVHSCIDACHEWS 208
           Y E+L V+ +  ++R+   + +   S ++AC      G  M       +   + +  +  
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFL---VKSGFDRD 182

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           ++V   L+  Y K G +D AR +FD + E+  V                           
Sbjct: 183 VYVGTLLIDFYLKDGNIDYARLVFDALPEKSTV--------------------------- 215

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                   TW T+  GC++ G     L+L  ++       D       L ACS +  L+ 
Sbjct: 216 --------TWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEG 267

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GK+IH   +R       ++ N LI  Y +C  +  A+ LF     K+II+W ++LSGY  
Sbjct: 268 GKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQ 327

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               +E+  LF  M + G++P+    +SIL  CA +  L  G + H Y ++  + N+  +
Sbjct: 328 NALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYV 387

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY---GIQGEGRVALKLFEEMN 505
             NSL++MYA+   + +A+ VFD+ +  D V + ++I GY   G Q E   AL +F +M 
Sbjct: 388 T-NSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMR 446

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
              I+P  +T V++L A S S   +   KQ   +   YG+   +   + ++D+Y     L
Sbjct: 447 FRLIRPSLLTFVSLLRA-SASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCL 505

Query: 566 NKAKEIITKMPYTPTSAMWATLL-GACQIHRN-TGIGEWAAEKLLETRPENSGYYVLIAN 623
             ++ +  +M       +W ++  G  Q   N   +  +   +L   RP+   +    AN
Sbjct: 506 KDSRLVFDEMKVKDL-VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTF----AN 560

Query: 624 MYAATG 629
           M  A G
Sbjct: 561 MVTAAG 566


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 191/584 (32%), Positives = 299/584 (51%), Gaps = 52/584 (8%)

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
           +A  L +   +R  + +N++IS +   G  + A   +     +    D  ++  +L A  
Sbjct: 118 DARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK----DAVSWNGMLAAY- 172

Query: 187 EMMDVDFGRV--VHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
               V  GRV       ++  EW +   NAL+S Y ++G++  AR LFD+M  RD VSWN
Sbjct: 173 ----VRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWN 228

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR-- 302
            M+S YA +G   EA +LF    +     +V TW  +  G  + G  +    +   M   
Sbjct: 229 IMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER 284

Query: 303 ------------TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                        Q   +D    +  +  C +V +                       N 
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW----------------------NT 322

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           ++T Y++   L  A  +F    +K  ++W +ML+ Y+   C+EE+  LF EM R G   N
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
               A +L  CA +A L+ G + H  ++R A +     + N+L+ MY + G + +A++ F
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIR-AGYGVGCFVGNALLAMYFKCGNMEDARNAF 441

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           + M  RD V++ ++IAGY   G G+ AL++F+ M     KPD +T+V VL+ACSHSGLV 
Sbjct: 442 EEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVE 501

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +G   F  M   +G+  + EH+ CM+DL GRAG L +A +++  MP+ P S MW  LLGA
Sbjct: 502 KGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGA 561

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
            +IHRN  +G  AAEK+ E  PEN+G YVL++N+YA++G W    K+R  M + GV+K+P
Sbjct: 562 SRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVP 621

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           G +W++  N    F   D  + + ++IY  L  L   MK AGYV
Sbjct: 622 GFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYV 665



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 195/412 (47%), Gaps = 22/412 (5%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L++ Y  +   + A  L +    R  + WN+++S Y R G   EA  ++     R    D
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----D 254

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            FT+ +V+    +   ++  R V    DA  E +    NA+V+ Y +   +D A+ LF+ 
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRV---FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M  R+  SWNTM++ YA  G+ +EA  +F  M ++    + ++W  +     + G  +  
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEET 367

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L+L   M     +++  A    L  C+ + AL+ G ++HG  +R  YG    V NAL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +C ++  A   F+   E+ +++WN+M++GY      +E+  +F  M  +  +P+ +T+
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLM 473
             +L  C+    ++ G  +   +            +  ++++  R+G++ EA  +  D+ 
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 474 SRRDEVTYTSLIAGYGIQGE---GR-VALKLFEEMNKNQIKPDHVTMVAVLS 521
              D   + +L+    I      GR  A K+FE      ++P++  M  +LS
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFE------LEPENAGMYVLLS 593



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 40/220 (18%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N V    +V  Y    + + A  L      R    WN +++ Y + G   EA  V+  
Sbjct: 283 ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 166 MQSRRIRGDNFTYPSVLKA-------------------CGEMMDVD-FGRVVHSCID--- 202
           M  +    D  ++ ++L A                   CGE ++   F  V+ +C D   
Sbjct: 343 MPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398

Query: 203 -------------ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
                        A +    FV NAL++MY K G ++ AR  F++M ERD VSWNTMI+ 
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 458

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           YA  G  KEA ++F  M+    + + IT   +   C  +G
Sbjct: 459 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSG 498



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 42/243 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++  C  + AL  G QLH   I  G      +   L+  Y       +A    E  
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+ Y R GF  EAL ++  M++   + D+ T   VL AC     V+ G 
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG- 503

Query: 196 VVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
            +       H++ +      +  ++ + G+ G++  A  L   M  E D+  W  ++ A 
Sbjct: 504 -ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGAS 562

Query: 250 ---------------------------------YASKGLWKEAFQLFVEMQEEGV-EVNV 275
                                            YAS G W++A ++ V M+E GV +V  
Sbjct: 563 RIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPG 622

Query: 276 ITW 278
            +W
Sbjct: 623 FSW 625



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%)

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N  +  + R+G+V +A+ +F  M RR   TY +++AGY   G   +A  LF  +     +
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----R 97

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD+ +   +L A + S  + + +  F+ M     +      +  M+  +   GL++ A+ 
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGLVSLARH 152

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
                P    +  W  +L A    RN  + E  A  L  +R E
Sbjct: 153 YFDLAP-EKDAVSWNGMLAAYV--RNGRVEE--ARGLFNSRTE 190



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
            A+++ G+      L  AM       +N+++  Y+ +G++P A S+F  + R D  +Y +
Sbjct: 46  TAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNT 105

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
           L+    +      A  LF+EM       D VT   ++S+ ++ GLV   +  F+
Sbjct: 106 LLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHYFD 155


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 206/670 (30%), Positives = 338/670 (50%), Gaps = 52/670 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHA-CAIA 102
           L  +A  G+   A + + R+ +    + VV   +  ++  C  +KAL +GK +H+  +  
Sbjct: 96  LTAYAQNGHYRAALDLYKRMDLQP--NPVV---YTTVLGACASIKALEEGKAIHSRISGT 150

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            GL+ + +L   L+T YA      +A  L E  + R    WN +I+ Y + G + EA+ +
Sbjct: 151 KGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRL 210

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGK 221
           Y+ M    +     T+ SVL AC  +  +D GR +H+ I +   E  L + NAL++MY +
Sbjct: 211 YEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYAR 267

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
              +D A ++F ++  RD VSW+ MI+A+A   L+ EA + + +MQ EGV  N  T+ ++
Sbjct: 268 CKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASV 327

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L AC+ VG L+ G+ +H   +   Y
Sbjct: 328 -----------------------------------LLACASVGDLRAGRAVHDQILGNGY 352

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                   AL+ +Y+    L  A  LF     +    W  ++ GY+          L+RE
Sbjct: 353 KITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYRE 412

Query: 402 MFRSGVEPNYVTIAS-ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           M  +   P    I S ++  CA +      ++ H  I    M ++  +L  SLV MY+R 
Sbjct: 413 MKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISD-FVLATSLVNMYSRW 471

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G +  A+ VFD MS RD + +T+LIAGY   GE  +AL L++EM     +P  +T + VL
Sbjct: 472 GNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVL 531

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
            ACSH+GL  +G++ F  + S Y + P + H++C++DL  RAG L+ A+E+I  MP  P 
Sbjct: 532 YACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPN 591

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
              W++LLGA +IH++      AA ++ +  P +   YVL++N++A TG    +A VR  
Sbjct: 592 DVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNT 651

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC 700
           M   GV+K  G +W++  +    F V D S+ + QEI+  L  L+  +K+AGYV +    
Sbjct: 652 MVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPE---- 707

Query: 701 SEEEIVEEIG 710
             EE++ ++G
Sbjct: 708 -SEEVLHDVG 716



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 152/531 (28%), Positives = 257/531 (48%), Gaps = 50/531 (9%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
            DS  H      + + L   +Q+H   I+     N  L  ++V  Y       +A    +
Sbjct: 24  FDSSGHYRDALRQCQDLESVRQIHD-RISGAASANVFLGNEIVRAYGKCGSVASARAAFD 82

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
               +    W  +++ Y ++G Y  AL +YK+M    ++ +   Y +VL AC  +  ++ 
Sbjct: 83  AIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGACASIKALEE 139

Query: 194 GRVVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
           G+ +HS I       L V   N+L++MY K G ++ A+RLF++M  R   SWN MI+AYA
Sbjct: 140 GKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYA 199

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             G ++EA +L+ +M    VE +V T+ ++                              
Sbjct: 200 QSGHFEEAIRLYEDMD---VEPSVRTFTSV------------------------------ 226

Query: 312 ATVIGLGACSHVGALKLGKEIHG-SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                L ACS++G L  G++IH   + RG   +  +++NAL+TMY+RCK L  A  +F+ 
Sbjct: 227 -----LSACSNLGLLDQGRKIHALISSRGTELDL-SLQNALLTMYARCKCLDDAAKIFQR 280

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              + +++W++M++ +   D  +E+   + +M   GV PNY T AS+L  CA V +L+ G
Sbjct: 281 LPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAG 340

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           +  H  IL    +   L+   +LV++Y   G + EA+S+FD +  RDE  +T LI GY  
Sbjct: 341 RAVHDQILGNG-YKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSK 399

Query: 491 QGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
           QG     L+L+ EM N  ++    +    V+SAC+  G   + ++    + +  G+    
Sbjct: 400 QGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD-GMISDF 458

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
                +V++Y R G L  A+++  KM    T A W TL+     H   G+ 
Sbjct: 459 VLATSLVNMYSRWGNLESARQVFDKMSSRDTLA-WTTLIAGYAKHGEHGLA 508



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 129/472 (27%), Positives = 222/472 (47%), Gaps = 57/472 (12%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           Y   L+ C ++  V   R +H  I      ++F+ N +V  YGK G V  AR  FD +  
Sbjct: 30  YRDALRQCQDLESV---RQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIAR 86

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           ++  SW +M++AYA  G ++ A  L+  M    ++ N + + T+                
Sbjct: 87  KNDYSWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTV---------------- 127

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNALITMY 355
                              LGAC+ + AL+ GK IH S + G  G   +V   N+L+TMY
Sbjct: 128 -------------------LGACASIKALEEGKAIH-SRISGTKGLKLDVILENSLLTMY 167

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++C  L  A  LF+  + +S+ +WN+M++ Y      EE+  L+ +M    VEP+  T  
Sbjct: 168 AKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFT 224

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           S+L  C+ +  L  G++ H  I  R      L L N+L+ MYAR   + +A  +F  + R
Sbjct: 225 SVLSACSNLGLLDQGRKIHALISSRGT-ELDLSLQNALLTMYARCKCLDDAAKIFQRLPR 283

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RD V+++++IA +        A++ + +M    ++P++ T  +VL AC+  G +  G+  
Sbjct: 284 RDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAV 343

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG--ACQI 593
            +++    G    L +   +VDLY   G L++A+ +  ++       +W  L+G  + Q 
Sbjct: 344 HDQILG-NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-NRDEGLWTVLIGGYSKQG 401

Query: 594 HRNTGIGEWAAEKLLETR-PENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
           HR TG+ E   E    T+ P     Y  + +  A+ G +   A  R    D+
Sbjct: 402 HR-TGVLELYREMKNTTKVPATKIIYSCVISACASLGAF---ADARQAHSDI 449


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/584 (32%), Positives = 311/584 (53%), Gaps = 19/584 (3%)

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLK 183
           +NA  + + +  R    W  +IS   R+G +A+ +  + +M  +      + F    VL+
Sbjct: 75  HNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLR 134

Query: 184 ACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
            C  + DV+ GR +H  I     C +  + + NA++ MY K G    ARR F  M ++DA
Sbjct: 135 CCAGLGDVESGRRIHGWILRSGVCPD--VVLCNAVLDMYAKCGDHGRARRAFGAMAQKDA 192

Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
            SWN +I A    G    A QLF    +E    +V +WNTI  G +R G+    L  L +
Sbjct: 193 TSWNIVIRACLQDGDLVGATQLF----DESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQ 248

Query: 301 M-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
           M R   T+ +   +++       + +  LG+++HG  V     E   V  +L+ MY +C 
Sbjct: 249 MVRAGVTFSNYTYSMV-FALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCG 307

Query: 360 DLRHAYILFKMTA---EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           ++  A  +F   +   E     W++M++GY      EE+   FR M R GV      + S
Sbjct: 308 EMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTS 367

Query: 417 ILPLCARVANLQHGKEFHCYILRRA-MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           +   CA    ++ G++ H ++ +    F+  L   +++V+MY++SG + +A  +F     
Sbjct: 368 VASACANAGMVEQGRQVHGFVEKLGHRFDAPLA--SAIVDMYSKSGSLEDACRIFRSAQT 425

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           ++   +T+++  Y   G+GR+AL++F  M   +I P+ +T+VAVLSACSHSGLV +G   
Sbjct: 426 KNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHY 485

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  M   YGI P  EH+ CMVDLYGRAGLL+KAK  I +   +  + +W TLL AC++H+
Sbjct: 486 FNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHK 545

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           +    + A+EKL++    ++G YVL++NMYA    W    K+R+ M++  VRK PG +W+
Sbjct: 546 HIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWI 605

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
              NV   F+  DTS+ ++ EIY  L  L E +K+ GY  + + 
Sbjct: 606 HLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDL 649



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 185/435 (42%), Gaps = 80/435 (18%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---------------- 120
            A ++ CC  +  +  G+++H   +  G+  + VL   ++  YA                
Sbjct: 129 LAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMA 188

Query: 121 -----SFSLYNNACF----------LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
                S+++   AC           L + S++R    WN ++S  +R G   EAL   +Q
Sbjct: 189 QKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQ 248

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           M    +   N+TY  V    G +   D GR +H   + A  E   FV  +L+ MY K G+
Sbjct: 249 MVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGE 308

Query: 225 VDVARRLFDK---MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
           ++ A  +FD+     E    +W+TM++ Y   G  +EA + F  M  EGV          
Sbjct: 309 MESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVP--------- 359

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                  G F                L SVA+     AC++ G ++ G+++HG   +  +
Sbjct: 360 ------AGQF---------------ILTSVAS-----ACANAGMVEQGRQVHGFVEKLGH 393

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                + +A++ MYS+   L  A  +F+    K++  W +ML  Y        +  +F  
Sbjct: 394 RFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSR 453

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF-----NEHLLLWNSLVEM 456
           M    + PN +T+ ++L  C+    +  G  +H + L +  +      EH   +N +V++
Sbjct: 454 MKAEKIMPNEITLVAVLSACSHSGLVSDG--YHYFNLMQEEYGIVPNTEH---YNCMVDL 508

Query: 457 YARSGKVPEAKSVFD 471
           Y R+G + +AK+  +
Sbjct: 509 YGRAGLLDKAKNFIE 523



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           GA    K IH  +VRGC      +           + L +A+ +F  T  +S+  W S++
Sbjct: 47  GACAAKKAIHRQSVRGCVPSSSVI----------ARGLHNAHRVFDGTPTRSLPAWTSII 96

Query: 384 SGYTHLDCAEESAFLFREMFRS--GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           SG        +    F EM        PN   +A +L  CA + +++ G+  H +ILR  
Sbjct: 97  SGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSG 156

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           +  + ++L N++++MYA+ G    A+  F  M+++D  ++  +I      G+   A +LF
Sbjct: 157 VCPD-VVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLF 215

Query: 502 EE 503
           +E
Sbjct: 216 DE 217



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 11/209 (5%)

Query: 47  FAGRGNLSKAFEAFTR-IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           +   G   +A E F R +R    +   +L S A     C     + QG+Q+H     LG 
Sbjct: 337 YVQNGREEEALEFFRRMLREGVPAGQFILTSVAS---ACANAGMVEQGRQVHGFVEKLGH 393

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             +  L   +V  Y+      +AC +  ++  +    W  ++  Y   G    AL ++ +
Sbjct: 394 RFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSR 453

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV----HNALVSMYGK 221
           M++ +I  +  T  +VL AC     V  G    + +    E+ +      +N +V +YG+
Sbjct: 454 MKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQ--EEYGIVPNTEHYNCMVDLYGR 511

Query: 222 FGQVDVARRLFDK-MLERDAVSWNTMISA 249
            G +D A+   ++  +  +AV W T++SA
Sbjct: 512 AGLLDKAKNFIEENKISHEAVVWKTLLSA 540


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 191/638 (29%), Positives = 328/638 (51%), Gaps = 49/638 (7%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNAC--FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           +  PV    LV  +A+     +A   F       R  +  N ++S + R    A A+ V+
Sbjct: 91  DPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVF 150

Query: 164 KQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH---SCIDACHEWSLFVHNALVSMY 219
             +  S  +R D++++ +++ A G+M ++          S + +     L V NAL+++Y
Sbjct: 151 HALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALY 210

Query: 220 GKFGQVDV---ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            K    +    AR++ D+M ++D ++W TM+  Y  +G    A  +F E+  +    +V+
Sbjct: 211 MKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGK---FDVV 267

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
            WN +  G +++G      EL  RM +++  LD       L AC++ G    GK +HG  
Sbjct: 268 -WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQI 326

Query: 337 VRGCYGEYEN----VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC- 391
           +R            V NAL+T+YS+   +  A  +F     K +++WN++LSGY    C 
Sbjct: 327 IRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCL 386

Query: 392 ------------------------------AEESAFLFREMFRSGVEPNYVTIASILPLC 421
                                         +E++  LF +M    V+P   T A  +  C
Sbjct: 387 DKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAAC 446

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
             +  L+HG++ H ++++   F       N+L+ MYA+ G V +A+ VF +M   D V++
Sbjct: 447 GELGALKHGRQLHAHLVQ-CGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSW 505

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
            ++I+  G  G GR AL+LF++M    I PD ++ + +L+AC+H+GLV EG   FE M  
Sbjct: 506 NAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKR 565

Query: 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGE 601
            +GI P  +H+A ++DL GR+G + +A+++I  MP+ PT ++W  +L  C+ + +   G 
Sbjct: 566 DFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGA 625

Query: 602 WAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVF 661
           +AA++L    P++ G Y+L++N Y+A G W   A+VR  MRD GV+K PGC+W++ G+  
Sbjct: 626 YAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKI 685

Query: 662 SPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
             FLV DT + +AQE+Y  L  +   M+  GYV   +F
Sbjct: 686 HVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKF 723



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 11/186 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--CFLVE 133
           ++A  I  CG++ AL  G+QLHA  +  G E +      L+T YA     N+A   FLV 
Sbjct: 438 TYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVM 497

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             N+   + WN +IS   + G   EAL ++ QM +  I  D  ++ ++L AC     VD 
Sbjct: 498 -PNLDS-VSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDE 555

Query: 194 GRVVHSCIDACHEWSLFV---HNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMIS 248
           G   H       ++ +     H A L+ + G+ G++  AR L   M  E     W  ++S
Sbjct: 556 G--FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILS 613

Query: 249 AYASKG 254
              + G
Sbjct: 614 GCRTNG 619


>gi|15231917|ref|NP_188091.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274207|sp|Q9LUC2.1|PP231_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14730
 gi|9294394|dbj|BAB02404.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642039|gb|AEE75560.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 653

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/620 (30%), Positives = 317/620 (51%), Gaps = 41/620 (6%)

Query: 84  CGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           C + K    G+Q+H   +  G L+ +P     LV  YA   L   A  +   S  R    
Sbjct: 70  CAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGGSE-RDVFG 128

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           +N LIS +V +G   +A+  Y++M++  I  D +T+PS+LK    M   D  +V      
Sbjct: 129 YNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGSDAMELSDVKKVHGLAFK 188

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD-AVSWNTMISAYASKGLWKEAFQ 261
              +   +V + LV+ Y KF  V+ A+++FD++ +RD +V WN +++ Y+         Q
Sbjct: 189 LGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYS---------Q 239

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F                           F+  L + S+MR +   +        L A +
Sbjct: 240 IF--------------------------RFEDALLVFSKMREEGVGVSRHTITSVLSAFT 273

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
             G +  G+ IHG AV+   G    V NALI MY + K L  A  +F+   E+ + TWNS
Sbjct: 274 VSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNS 333

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           +L  + +    + +  LF  M  SG+ P+ VT+ ++LP C R+A+L+ G+E H Y++   
Sbjct: 334 VLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSG 393

Query: 442 MFNE---HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           + N    +  + NSL++MY + G + +A+ VFD M  +D  ++  +I GYG+Q  G +AL
Sbjct: 394 LLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELAL 453

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            +F  M +  +KPD +T V +L ACSHSG + EG+    +M ++Y I P  +H+AC++D+
Sbjct: 454 DMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYACVIDM 513

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRA  L +A E+    P      +W ++L +C++H N  +   A ++L E  PE+ G Y
Sbjct: 514 LGRADKLEEAYELAISKPICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELEPEHCGGY 573

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+Y   G ++++  VR  MR   V+K PGC+W+   N    F   + ++ + + I+
Sbjct: 574 VLMSNVYVEAGKYEEVLDVRDAMRQQNVKKTPGCSWIVLKNGVHTFFTGNQTHPEFKSIH 633

Query: 679 PLLGGLTELMKDAGYVVKEE 698
             L  +   M    Y+  ++
Sbjct: 634 DWLSLVISHMHGHEYMTVDD 653



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 7/269 (2%)

Query: 310 SVATVIG-LGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYIL 367
           +VAT I  L  C+       G++IHG  VR G   +      +L+ MY++C  +R A ++
Sbjct: 59  NVATCIATLQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLV 118

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F   +E+ +  +N+++SG+       ++   +REM  +G+ P+  T  S+L   +    L
Sbjct: 119 FG-GSERDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLK-GSDAMEL 176

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD-LMSRRDEVTYTSLIA 486
              K+ H    +   F+    + + LV  Y++   V +A+ VFD L  R D V + +L+ 
Sbjct: 177 SDVKKVHGLAFKLG-FDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVN 235

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           GY        AL +F +M +  +     T+ +VLSA + SG +  G +    +    G  
Sbjct: 236 GYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNG-RSIHGLAVKTGSG 294

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKM 575
             +     ++D+YG++  L +A  I   M
Sbjct: 295 SDIVVSNALIDMYGKSKWLEEANSIFEAM 323



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 4/187 (2%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T  + L  CA+  +   G++ H +++R+   ++      SLV MYA+ G +  A  V
Sbjct: 59  NVATCIATLQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLV 118

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F   S RD   Y +LI+G+ + G    A++ + EM  N I PD  T  ++L       + 
Sbjct: 119 FG-GSERDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGS--DAME 175

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL- 588
           +   K+   +    G        + +V  Y +   +  A+++  ++P    S +W  L+ 
Sbjct: 176 LSDVKKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVN 235

Query: 589 GACQIHR 595
           G  QI R
Sbjct: 236 GYSQIFR 242



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 115/269 (42%), Gaps = 26/269 (9%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL----E 106
           G+       F R+  +    D+V  +   ++  CG++ +L QG+++H   I  GL     
Sbjct: 342 GDHDGTLALFERMLCSGIRPDIV--TLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKS 399

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   L+  Y       +A  + ++  ++    WN++I+ Y        AL ++  M
Sbjct: 400 SNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCM 459

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGR-------VVHSCIDACHEWSLFVHNALVSMY 219
               ++ D  T+  +L+AC     ++ GR        V++ +     ++      ++ M 
Sbjct: 460 CRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYA-----CVIDML 514

Query: 220 GKFGQVDVARRL-FDKMLERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNV 275
           G+  +++ A  L   K +  + V W +++S+   + +K L   A +   E++ E     V
Sbjct: 515 GRADKLEEAYELAISKPICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELEPEHCGGYV 574

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           +  N      +  G ++ VL++   MR Q
Sbjct: 575 LMSNVY----VEAGKYEEVLDVRDAMRQQ 599


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/691 (27%), Positives = 338/691 (48%), Gaps = 67/691 (9%)

Query: 19  EKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIR-ITAASHDVVLDSF 77
           +  IP   K+P       R +    +   A  G + +A EA   +R   A  H+V++  F
Sbjct: 23  QNLIPATSKEPPPRLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGF 82

Query: 78  AH----------------------------IIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           A                             ++ CC ++  L +G+  H   I LGLE + 
Sbjct: 83  ADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDV 142

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ-S 168
                LV FYA   L  +A  + +   +R  + WN ++  YV +G  + AL  +++M  +
Sbjct: 143 YTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDA 202

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
             ++ D+    + L AC   +    G+ +H   I    E  + V  +L+ MY K G+V  
Sbjct: 203 LEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAY 262

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR +F  M  R                                    V+TWN + GG   
Sbjct: 263 ARSVFATMPLR-----------------------------------TVVTWNCMIGGYAL 287

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                   +   +MR +   ++ V  +  L AC+   +   G+ +HG  VR  +  +  +
Sbjct: 288 NERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVL 347

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
             AL+ MY +   +  +  +F   A K++++WN+M++ Y + +   E+  LF E+    +
Sbjct: 348 ETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPL 407

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            P+Y T+++++P    + +L+H ++ H YI+    + E+ L+ N+++ MYARSG V  ++
Sbjct: 408 YPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLG-YAENTLIMNAVLHMYARSGDVVASR 466

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            +FD M  +D +++ ++I GY I G+G+ AL++F+EM  N ++P+  T V+VL+ACS SG
Sbjct: 467 EIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSG 526

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG   F  M   YG+ PQ+EH+ CM DL GR G L +  + I  MP  PTS +W +L
Sbjct: 527 LVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSL 586

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L A +   +  I E+AAE++ +   +N+G Y+++++MYA  G W+ + +VR  M++ G+R
Sbjct: 587 LTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLR 646

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           +    + V+  +    F   D S+ Q++ I+
Sbjct: 647 RTEPISLVELHSTACSFANGDMSHSQSRTIH 677


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 189/604 (31%), Positives = 309/604 (51%), Gaps = 39/604 (6%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
            +G Q+H   +  GL+K   +   L+  Y        A  L + + ++  + WN +IS Y
Sbjct: 211 GRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGY 270

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF 210
             +G   EAL ++  M+   +R    ++ SV+K C  + ++ F   +H            
Sbjct: 271 AANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCS---------- 320

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
                V  YG          LFD+ +         ++ AY+      +A +LF E+   G
Sbjct: 321 -----VVKYG---------FLFDQNIR------TALMVAYSKCTAMLDALRLFKEI---G 357

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
              NV++W  +  G L+    +  ++L S M+ +    +     + L A   +       
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----S 413

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           E+H   V+  Y     V  AL+  Y +   +  A  +F    +K I+ W++ML+GY    
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARV-ANLQHGKEFHCYILRRAMFNEHLLL 449
             E +  +F E+ + G++PN  T +SIL +CA   A++  GK+FH + ++ +  +  L +
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK-SRLDSSLCV 532

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            ++L+ MYA+ G +  A+ VF     +D V++ S+I+GY   G+   AL +F+EM K ++
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           K D VT + V +AC+H+GLV EG+K F+ M     I P  EH +CMVDLY RAG L KA 
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAM 652

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           ++I  MP    S +W T+L AC++H+ T +G  AAEK++  +PE+S  YVL++NMYA +G
Sbjct: 653 KVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESG 712

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W + AKVR  M +  V+K PG +W++  N    FL  D S+    +IY  L  L+  +K
Sbjct: 713 DWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLK 772

Query: 690 DAGY 693
           D GY
Sbjct: 773 DLGY 776



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 137/488 (28%), Positives = 237/488 (48%), Gaps = 50/488 (10%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+QLH   I  G   +  +   LV  Y   S + +   + +    R  + W  LIS Y R
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFV 211
           +    E L ++ +MQ+   + ++FT+ + L    E      G  VH+  +    + ++ V
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N+L+++Y K G V  AR LFDK   +  V+WN+MIS YA+ GL  EA  +F  M+    
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR---- 287

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
                                     L+ +R  E+   S A+VI L  C+++  L+  ++
Sbjct: 288 --------------------------LNYVRLSES---SFASVIKL--CANLKELRFTEQ 316

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLD 390
           +H S V+  +   +N+R AL+  YS+C  +  A  LFK +    ++++W +M+SG+   D
Sbjct: 317 LHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQND 376

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             EE+  LF EM R GV PN  T + IL     ++      E H  ++ +  +     + 
Sbjct: 377 GKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS----PSEVHAQVV-KTNYERSSTVG 431

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
            +L++ Y + GKV EA  VF  +  +D V +++++AGY   GE   A+K+F E+ K  IK
Sbjct: 432 TALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIK 491

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC----MVDLYGRAGLLN 566
           P+  T  ++L+ C+ +   +   KQF      + I  +L+   C    ++ +Y + G + 
Sbjct: 492 PNEFTFSSILNVCAATNASMGQGKQFHG----FAIKSRLDSSLCVSSALLTMYAKKGNIE 547

Query: 567 KAKEIITK 574
            A+E+  +
Sbjct: 548 SAEEVFKR 555



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 127/511 (24%), Positives = 227/511 (44%), Gaps = 81/511 (15%)

Query: 113 PKLVTFYASFSLYNNA-------CF-------------LVENSNIRYPLPWNLLISLYVR 152
           P L  F   F +Y N        CF             L + S  R    +  L+  + R
Sbjct: 11  PSLENFKPKFRIYANGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSR 70

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFV 211
           DG   EA  ++  +    +  D   + SVLK    + D  FGR +H  CI          
Sbjct: 71  DGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCI---------- 120

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
                    KFG +D            D     +++  Y     +K+  ++F EM+E   
Sbjct: 121 ---------KFGFLD------------DVSVGTSLVDTYMKGSNFKDGRKVFDEMKER-- 157

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             NV+TW T+  G  R      VL L  RM+ + T  +S      LG  +  G    G +
Sbjct: 158 --NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H   V+    +   V N+LI +Y +C ++R A ILF  T  KS++TWNSM+SGY     
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA-MFNEHLLLW 450
             E+  +F  M  + V  +  + AS++ LCA +  L+  ++ HC +++   +F++++   
Sbjct: 276 DLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR-- 333

Query: 451 NSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGYGIQGEGR-VALKLFEEMNKNQ 508
            +L+  Y++   + +A  +F ++    + V++T++I+G+ +Q +G+  A+ LF EM +  
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGF-LQNDGKEEAVDLFSEMKRKG 392

Query: 509 IKPDHVTMVAVLSACS-------HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           ++P+  T   +L+A         H+ +V   +  +ER +++            ++D Y +
Sbjct: 393 VRPNEFTYSVILTALPVISPSEVHAQVV---KTNYERSSTVG---------TALLDAYVK 440

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            G + +A ++ + +      A  A L G  Q
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQ 471



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 195/404 (48%), Gaps = 48/404 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-EN 134
           SFA +I  C  +K L   +QLH   +  G   +  +   L+  Y+  +   +A  L  E 
Sbjct: 297 SFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEI 356

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             +   + W  +IS ++++    EA+ ++ +M+ + +R + FTY  +L A    + V   
Sbjct: 357 GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA----LPVISP 412

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             VH+  +   +E S  V  AL+  Y K G+V+ A ++F  + ++D V+W+ M++ YA  
Sbjct: 413 SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQT 472

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G  + A ++F E+ + G++ N  T+++I   C  T                         
Sbjct: 473 GETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN------------------------ 508

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                      ++  GK+ HG A++        V +AL+TMY++  ++  A  +FK   E
Sbjct: 509 ----------ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQRE 558

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K +++WNSM+SGY     A ++  +F+EM +  V+ + VT   +   C     ++ G+++
Sbjct: 559 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKY 618

Query: 434 HCYILRR---AMFNEHLLLWNS-LVEMYARSGKVPEAKSVFDLM 473
              ++R    A   EH    NS +V++Y+R+G++ +A  V + M
Sbjct: 619 FDIMVRDCKIAPTKEH----NSCMVDLYSRAGQLEKAMKVIENM 658



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 7/214 (3%)

Query: 76  SFAHIIFCCGKVKA-LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +F+ I+  C    A + QGKQ H  AI   L+ +  +   L+T YA      +A  + + 
Sbjct: 496 TFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR 555

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
              +  + WN +IS Y + G   +AL V+K+M+ R+++ D  T+  V  AC     V+ G
Sbjct: 556 QREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEG 615

Query: 195 -RVVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKMLERDAVS-WNTMISA-- 249
            +     +  C       HN+ +V +Y + GQ++ A ++ + M      + W T+++A  
Sbjct: 616 EKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACR 675

Query: 250 -YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            +    L + A +  + M+ E     V+  N  A
Sbjct: 676 VHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYA 709


>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
 gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
          Length = 531

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/548 (32%), Positives = 290/548 (52%), Gaps = 67/548 (12%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W  +IS Y  +GF  EAL +Y+QM +  I+ D+ T+ S L AC ++ D   G+ +
Sbjct: 21  RDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLAD---GKAI 77

Query: 198 HSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
           H+ I + +  S FV +AL++MY + G V  AR+ F+K+  +  V W ++++AY       
Sbjct: 78  HARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAY------- 130

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                                       ++TG+++  L+L  RM  +  + D V  V  L
Sbjct: 131 ----------------------------VQTGHYREALDLYGRMDHEGVHADGVTYVTAL 162

Query: 318 GACSHVGALKLGKEIHG--------------------------SAVRGCYGEYEN---VR 348
           GAC+ +GALK GK IH                            A R  +    +   V+
Sbjct: 163 GACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQ 222

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           NAL+TMY++C  L  A   F+ +  K +++WN+M+  Y       E+  L++ M   GV 
Sbjct: 223 NALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVL 282

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+ VTIAS L  CA   +LQ G+E H  +L+   F   L++  +LV MY R G++  A+S
Sbjct: 283 PDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARS 342

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           +F+ M +RD +++T++ + Y  QG     L L+ EM  + I+P+ +T  ++L  CSH+GL
Sbjct: 343 MFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGL 402

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           +  G + F  M S + + P  EHF CMVDL GR+G L  A+ ++  MPY P S  W T+L
Sbjct: 403 LARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVL 462

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
           G+C+ H +    + AA ++ E  PEN+  Y L+++++ A G   +  +V+  M+++G++K
Sbjct: 463 GSCKTHSDADTAKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKK 522

Query: 649 IPGCAWVD 656
            PG + ++
Sbjct: 523 PPGQSLIE 530



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/489 (26%), Positives = 237/489 (48%), Gaps = 31/489 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G   +A + + ++       D +  +F   +  C K   LA GK +HA  ++ 
Sbjct: 30  ISSYANNGFCDEALDLYQQMDADGIQPDSI--TFTSALLACTK---LADGKAIHARIVSS 84

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            +E + V    L+  YA     ++A    E    ++ + W  L++ YV+ G Y EAL +Y
Sbjct: 85  NMESDFV-GSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTGHYREALDLY 143

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFG 223
            +M    +  D  TY + L AC  +  +  G+ +H  +  C   SL VH AL++MY K G
Sbjct: 144 GRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAKCG 203

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKG---LWKEAFQLFVEMQEEGVEVNVITWNT 280
           ++D AR +F+++    AV  N +++ YA  G   L K AF       E     ++++WN 
Sbjct: 204 ELDAARAVFNRLASNVAVQ-NALVTMYAKCGSLELAKSAF-------EASGRKDLVSWNA 255

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG- 339
           + G   + G  +  L+L   M +Q    D V     L AC+  G+L+LG+EIH   ++  
Sbjct: 256 MIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQ 315

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +     V+ AL+ MY RC  L  A  +F+   ++ +++W +M S Y     A++   L+
Sbjct: 316 SFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLY 375

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-----FNEHLLLWNSLV 454
            EM   G+ PN +T  SIL  C+    L  G E  C++  ++        EH L    +V
Sbjct: 376 LEMVLHGIRPNEITFTSILVGCSHAGLLARGVE--CFLEMQSEHEVVPIREHFLC---MV 430

Query: 455 EMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++  RSG++ +A+++ + M  + D V + +++       +   A +    +   ++ P++
Sbjct: 431 DLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRV--KELDPEN 488

Query: 514 VTMVAVLSA 522
            ++ ++LS+
Sbjct: 489 TSLYSLLSS 497



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 175/386 (45%), Gaps = 67/386 (17%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MYGK G V+ AR++FD +  RDAVSW +MIS+YA+ G   EA  L+ +M  +G++ + IT
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSIT 60

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           + +    C +  +                                      GK IH   V
Sbjct: 61  FTSALLACTKLAD--------------------------------------GKAIHARIV 82

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
                E + V +ALI MY+RC D+  A   F+    K ++ W S+++ Y       E+  
Sbjct: 83  SSNM-ESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTGHYREALD 141

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR------------------ 439
           L+  M   GV  + VT  + L  CA +  L+ GK  H  +                    
Sbjct: 142 LYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAK 201

Query: 440 -------RAMFN---EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
                  RA+FN    ++ + N+LV MYA+ G +  AKS F+   R+D V++ ++I  Y 
Sbjct: 202 CGELDAARAVFNRLASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYA 261

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G GR AL L++ M    + PD VT+ + LSAC+ SG +  G++   R+         L
Sbjct: 262 QHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSL 321

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKM 575
                +V++YGR G L  A+ +   M
Sbjct: 322 MVQTALVNMYGRCGRLETARSMFEDM 347


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 199/635 (31%), Positives = 336/635 (52%), Gaps = 53/635 (8%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLV-EN 134
           FA +I  C        G+ ++   +  G LE +  +  +L+  +   S    + + V + 
Sbjct: 131 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 190

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
              R  + W L+I+ + + G   +A+ ++  M+      D FTY SVL AC E+  +  G
Sbjct: 191 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 250

Query: 195 RVVHS-------CIDACHEWSLFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWN 244
           + +HS        +D C      V  +LV MY K    G VD +R++F++M E + +SW 
Sbjct: 251 KQLHSRVIRLGLALDVC------VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 304

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            +I+AY   G          E  +E +E+    +  +  G +R  +F             
Sbjct: 305 AIITAYVQSG----------ECDKEAIEL----FCKMISGHIRPNHF------------- 337

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                S ++V  L AC ++     G++++  AV+        V N+LI+MY+R   +  A
Sbjct: 338 -----SFSSV--LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 390

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
              F +  EK+++++N+++ GY     +EE+  LF E+  +G+  +  T AS+L   A +
Sbjct: 391 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 450

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
             +  G++ H  +L+   +  +  + N+L+ MY+R G +  A  VF+ M  R+ +++TS+
Sbjct: 451 GAMGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSM 509

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           I G+   G    AL++F +M +   KP+ +T VAVLSACSH G++ EGQK F  M   +G
Sbjct: 510 ITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHG 569

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           I P++EH+ACMVDL GR+GLL +A E I  MP    + +W TLLGAC++H NT +G  AA
Sbjct: 570 IVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 629

Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
           E +LE  P++   Y+L++N++A+ G W  + K+R  M++  + K  GC+W++  N    F
Sbjct: 630 EMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRF 689

Query: 665 LVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            V +TS+ QA +IY  L  L   +K+ GY+   +F
Sbjct: 690 HVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDF 724



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/586 (22%), Positives = 269/586 (45%), Gaps = 58/586 (9%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G L  AF     +    A  D  L +++ ++  C + +    GK +H   +  GLE + V
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPD--LTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSV 62

Query: 111 LVPKLVTFYASFSLYNNACFLVEN-SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           ++  L++ Y+       A  + E   N R  + W+ ++S +  +    +A+  +  M   
Sbjct: 63  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 122

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGK-FGQVD 226
               + + + +V++AC        G +++  +      E  + V   L+ M+ K  G + 
Sbjct: 123 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 182

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A ++FDKM ER+ V+W  MI+ +A  G  ++A  LF++M+  G   +  T++++     
Sbjct: 183 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV----- 237

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                         L AC+ +G L LGK++H   +R        
Sbjct: 238 ------------------------------LSACTELGLLALGKQLHSRVIRLGLALDVC 267

Query: 347 VRNALITMYSRCK---DLRHAYILFKMTAEKSIITWNSMLSGYTHL-DCAEESAFLFREM 402
           V  +L+ MY++C     +  +  +F+   E ++++W ++++ Y    +C +E+  LF +M
Sbjct: 268 VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM 327

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
               + PN+ + +S+L  C  +++   G++ + Y ++  + + +  + NSL+ MYARSG+
Sbjct: 328 ISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN-CVGNSLISMYARSGR 386

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + +A+  FD++  ++ V+Y +++ GY    +   A  LF E+    I     T  ++LS 
Sbjct: 387 MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG 446

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPTS 581
            +  G + +G++   R+  + G +   +     ++ +Y R G +  A ++  +M      
Sbjct: 447 AASIGAMGKGEQIHGRL--LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVI 504

Query: 582 AMWATLLGACQIHRNTGIGEWAAE---KLLE--TRPENSGYYVLIA 622
           + W +++     H   G    A E   K+LE  T+P    Y  +++
Sbjct: 505 S-WTSMITGFAKH---GFATRALEMFHKMLETGTKPNEITYVAVLS 546



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 111/242 (45%), Gaps = 24/242 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY-------ASFSLYNNA 128
           +FA ++     + A+ +G+Q+H   +  G + N  +   L++ Y       A+F ++N  
Sbjct: 439 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE- 497

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
              +E+ N+   + W  +I+ + + GF   AL ++ +M     + +  TY +VL AC  +
Sbjct: 498 ---MEDRNV---ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 551

Query: 189 MDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNT 245
             +  G+   + +   H     +  +  +V + G+ G +  A    + M L  DA+ W T
Sbjct: 552 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 611

Query: 246 MISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           ++ A   + +  L + A ++ +E + +     ++  N  A      G +K V+++   M+
Sbjct: 612 LLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA----GQWKDVVKIRKSMK 667

Query: 303 TQ 304
            +
Sbjct: 668 ER 669


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/588 (31%), Positives = 314/588 (53%), Gaps = 39/588 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  +I  CG       G  +HA  +  G + +  +   L+  Y +      A  + +  
Sbjct: 125 TYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLM 184

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+ Y ++G   EAL V+  M  + I  D  T  SVL  C  + +++ GR
Sbjct: 185 RERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGR 244

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+ ++  +    + V N+L+ MY K G +D A+ +F +M +RD VSW TM++ Y   G
Sbjct: 245 RVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNG 304

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             + A  L   MQ E V+ N +T  ++                                 
Sbjct: 305 DARSALLLCQMMQFESVKPNFVTLASV--------------------------------- 331

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ + +LK G+ +HG A+R        V  ALI MY++C ++  ++ +F  T+++
Sbjct: 332 --LSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQ 389

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
               WN+++SG  H   + ++  LF++M    V+PN  T+ S+LP  A + +LQ  +  H
Sbjct: 390 RTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMH 449

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE--VTYTSLIAGYGIQG 492
            Y++R   F   + +   L+++Y++ G +  A ++F+ + ++D+  +T++++IAGYG+ G
Sbjct: 450 GYLIRSG-FLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHG 508

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G  A+ LF++M ++ +KP+ +T  ++L ACSH+GLV EG   F+ M     +  + +H+
Sbjct: 509 HGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHY 568

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            C++DL GRAG L +A E+I  M + P  A+W  LLG+C IH N  +GE AA+ L E  P
Sbjct: 569 TCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEP 628

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
            N+G YVL+AN+Y+A G W     VR  M ++G+RK P  + ++  N+
Sbjct: 629 GNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRNI 676



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 261/529 (49%), Gaps = 52/529 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPV---LVPKLVTFYASFSLYNNACFLVENSNIRYP 140
           C   K++   KQ+HA  I LGL  +P    L+  L   YA F    +A  L +   +R P
Sbjct: 28  CTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDE--LRNP 85

Query: 141 --LPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
               WN +I +Y   G   +AL ++ QM  S R   DN+TYP V+KACG+ +  + G ++
Sbjct: 86  SLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALI 145

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H+  + +  +   FV N+L++MY   G+++VARR+FD M ER  VS              
Sbjct: 146 HARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVS-------------- 191

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
                                WNT+  G  + G  K  L +   M  +    D    V  
Sbjct: 192 ---------------------WNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSV 230

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  CS++  L++G+ +H        GE  +V N+L+ MY++C ++  A ++F    ++ +
Sbjct: 231 LPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDV 290

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++W +M++GY  L+    SA L  +M +   V+PN+VT+AS+L  CA + +L+HG+  H 
Sbjct: 291 VSWTTMMNGYI-LNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHG 349

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           + +R+ + +E +++  +L++MYA+   V  +  VF   S++    + ++I+G    G  R
Sbjct: 350 WAIRQKLESE-VIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSR 408

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A++LF++M    + P+  T+ ++L A +    + + +     +    G   ++E    +
Sbjct: 409 KAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIR-SGFLSRIEVATIL 467

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAM-WATLLGACQIHRNTGIGEWA 603
           +D+Y + G L  A  I   +P      + W+ ++    +H   G GE A
Sbjct: 468 IDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMH---GHGETA 513


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 219/668 (32%), Positives = 342/668 (51%), Gaps = 62/668 (9%)

Query: 42  ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           E +K F G  N          + + A ++ V+L + A         + L  G+ +H   +
Sbjct: 359 EAVKIFVGTRN---------TVDVNADTYVVLLSALAEYSI---SEEGLRIGRVVHGHML 406

Query: 102 ALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
             GL    + V   LV  YA      +A  + +       + WN +IS   ++G   EA+
Sbjct: 407 RTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAV 466

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL----FVHNALV 216
             Y  M+   I   NF   S L +C  +  +  G+ VH   DA  +W L     V N LV
Sbjct: 467 MHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHC--DAV-KWGLDLDTSVSNVLV 523

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS-KGLWKEAFQLFVEMQEEGVEVNV 275
            MYG+ G +    ++F+ M E D VSWNTM+   AS +    E  ++F  M   G+  N 
Sbjct: 524 KMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNK 583

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
           +T+  +                                   L A S +  L+LGK++H +
Sbjct: 584 VTFINL-----------------------------------LAALSPLSVLELGKQVHAA 608

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEE 394
            ++    E   V NALI+ Y++  D+     LF  M+  +  I+WNSM+SGY +    +E
Sbjct: 609 VMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQE 668

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +      M  SG   +  T + IL  CA VA L+ G E H + +R  + ++ +++ ++LV
Sbjct: 669 AMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESD-VVVESALV 727

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MY++ G+V  A  +F+ M++R+E ++ S+I+GY   G GR A+++FEEM +++  PDHV
Sbjct: 728 DMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHV 787

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           T V+VLSACSH+GLV  G + FE M   +GI PQ+EH++C++DL GRAG ++K KE I +
Sbjct: 788 TFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQIEHYSCVIDLLGRAGKIDKIKEYIQR 846

Query: 575 MPYTPTSAMWATLLGACQIHR---NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           MP  P + +W T+L AC+  +   N  +G  A+  LLE  P+N   YVL +N +AATG W
Sbjct: 847 MPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMW 906

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
           +  AK RT MR    +K  G +WV   +    F+  D S+   +EIY  L  L + +++A
Sbjct: 907 EDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNA 966

Query: 692 GYVVKEEF 699
           GYV   E+
Sbjct: 967 GYVPLTEY 974



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 130/510 (25%), Positives = 219/510 (42%), Gaps = 49/510 (9%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           + LH   I  GL  +  L   LV  YA  +    A  + +    R  + W  L+S YV  
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 154 GFYAEALCVYKQMQSRRI----RGDNFTYPSVLKAC--GEMMDVDFGRVVHSCIDACHEW 207
           G   EA  V++ M  R +    R  +FT+ ++L+AC  G    + F   VH  +      
Sbjct: 141 GIAEEAFRVFRAML-REVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYA 199

Query: 208 S-LFVHNALVSMYGK--FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           S   V NAL+SMYG    G   +A+R+FD    RD ++WN ++S YA KG     F LF 
Sbjct: 200 SNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFK 259

Query: 265 EMQEEGVEVNV-ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           +MQ     + +  T +T          F  ++   S        LD V   +    CS  
Sbjct: 260 DMQRGDSRIQLRPTEHT----------FGSLITAASLSSGSSAVLDQVLVWVLKSGCS-- 307

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L +G                   +AL++ ++R      A  +F    +K+ +T N ++
Sbjct: 308 SDLYVG-------------------SALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLI 348

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA----NLQHGKEFHCYILR 439
            G    D +EE+  +F    R+ V+ N  T   +L   A  +     L+ G+  H ++LR
Sbjct: 349 VGLVRQDFSEEAVKIFVGT-RNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLR 407

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             + +  + + N LV MYA+ G +  A  +F LM   D +++ ++I+     G    A+ 
Sbjct: 408 TGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVM 467

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            +  M ++ I P +  +++ LS+C+   L+  GQ Q       +G+         +V +Y
Sbjct: 468 HYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQ-QVHCDAVKWGLDLDTSVSNVLVKMY 526

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           G  G ++   ++   M        W T++G
Sbjct: 527 GECGAMSDYWKVFNSMA-EHDEVSWNTMMG 555


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 191/653 (29%), Positives = 321/653 (49%), Gaps = 37/653 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G+    F  F  +    A  D     F  +I  C  +K L  G+ +H      GL+
Sbjct: 5   FAKVGDYINCFGTFRELIRCGARPDNYTLPF--VIRACRDLKNLQMGRLIHHIVYKFGLD 62

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LV  Y       +A FL +    R  + W ++I  Y   G   E+L ++++M
Sbjct: 63  LDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 122

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
           +   +  D     +V+ AC ++  +   R++   I                         
Sbjct: 123 REEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR----------------------- 159

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
                  K  + D +    MI  YA  G  + A ++F  M+E+    NVI+W+ +     
Sbjct: 160 -------KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK----NVISWSAMIAAYG 208

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
             G  +  L+L   M +     D +     L ACS +  L++G+ IH    +        
Sbjct: 209 YHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHF 268

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V  AL+ MY +C+++  A  LF    E+ ++TW  M+ GY     A ES  LF +M   G
Sbjct: 269 VCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 328

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           V P+ V + +++  CA++  +   +    YI R+  F   ++L  ++++M+A+ G V  A
Sbjct: 329 VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK-FQLDVILGTAMIDMHAKCGCVESA 387

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + +FD M  ++ ++++++IA YG  G+GR AL LF  M ++ I P+ +T+V++L ACSH+
Sbjct: 388 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 447

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           GLV EG + F  M   Y +   ++H+ C+VDL GRAG L++A ++I  M       +W  
Sbjct: 448 GLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGA 507

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
            LGAC+ H++  + E AA  LLE +P+N G+Y+L++N+YA  G W+ +AK R  M    +
Sbjct: 508 FLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRL 567

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           +KIPG  W++  N    F V DT++ +++EIY +L  L   ++  GYV    F
Sbjct: 568 KKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNF 620


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 198/626 (31%), Positives = 316/626 (50%), Gaps = 40/626 (6%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           VL +F  ++  C     LA G+ +HA   A GL    +    L   Y       +A  + 
Sbjct: 15  VLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVF 74

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR--IRGDNFTYPSVLKACGEMMD 190
           +    R  + WN +++ Y R+G  + A+    +MQ      R D+ T  SVL AC +   
Sbjct: 75  DRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARA 134

Query: 191 VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +   R VH+  + A  +  + V  A++  Y K G V+ AR +FD M  R++VS       
Sbjct: 135 LHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVS------- 187

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
                                       WN +  G    GN    + L  RM  +   + 
Sbjct: 188 ----------------------------WNAMIDGYADNGNATEAMALFWRMVQEGVDVT 219

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF- 368
             + +  L AC  +G L   + +H   VR       +V NALIT Y++CK    A  +F 
Sbjct: 220 DASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFN 279

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
           ++  +K+ I+WN+M+ G+T  +C E++  LF  M    V P+  T+ S++P  A +++  
Sbjct: 280 ELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPL 339

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
             +  H Y +R  + ++ + +  +L++MY++ G+V  A+ +FD    R  +T+ ++I GY
Sbjct: 340 QARWIHGYSIRHQL-DQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGY 398

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           G  G G+ A++LFEEM      P+  T ++VL+ACSH+GLV EGQK F  M   YG+ P 
Sbjct: 399 GSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPG 458

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH+  MVDL GRAG L++A   I  MP  P  +++  +LGAC++H+N  + E +A+ + 
Sbjct: 459 MEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIF 518

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  PE   Y+VL+AN+YA    W  +A+VRT M   G++K PG + +   N    F    
Sbjct: 519 ELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGS 578

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYV 694
           T++  A++IY  L  L E +KD GYV
Sbjct: 579 TNHQHAKDIYARLAKLIEEIKDMGYV 604



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 163/367 (44%), Gaps = 46/367 (12%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  GN ++A   F   R+     DV   S    +  CG++  L + +++H   + +
Sbjct: 192 IDGYADNGNATEAMALF--WRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRV 249

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLV-ENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           GL  N  +   L+T YA     + A  +  E  N +  + WN +I  + ++    +A  +
Sbjct: 250 GLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERL 309

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           + +MQ   +R D+FT  SV+ A  ++ D    R +H   I    +  ++V  AL+ MY K
Sbjct: 310 FARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSK 369

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G+V +ARRLFD   +R  ++WN MI  Y S G  + A +LF EM+  G   N  T+ ++
Sbjct: 370 CGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSV 429

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L ACSH G +  G++   S ++  Y
Sbjct: 430 -----------------------------------LAACSHAGLVDEGQKYFAS-MKKDY 453

Query: 342 GEYENVRN--ALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSG---YTHLDCAEES 395
           G    + +   ++ +  R   L  A+   K M  E  I  + +ML     + +++ AEES
Sbjct: 454 GLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEES 513

Query: 396 AFLFREM 402
           A +  E+
Sbjct: 514 AQIIFEL 520


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 194/649 (29%), Positives = 317/649 (48%), Gaps = 105/649 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  +I  C   ++  + KQ+H   + LG + +  +   L+  ++  S   +AC +   S
Sbjct: 215 TYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNES 274

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           ++   + WN +++ Y+  G   EA  +Y QM  R                          
Sbjct: 275 SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPER-------------------------- 308

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
                       S+   N+++ ++G  G V  A +LFD+MLE+D V+W+ +I+ +    +
Sbjct: 309 ------------SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEM 356

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
           ++EA + FV M + GV V                                   D V  V 
Sbjct: 357 YEEAIRTFVGMHKIGVMV-----------------------------------DEVVAVS 381

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL-------RHAYIL- 367
            L AC+++  + +GK IH  +++     Y N++NALI MYS+C D+         AY+L 
Sbjct: 382 ALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLD 441

Query: 368 -----------------------FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
                                  F    EK +++W+SM+SGY   D  +E+  LF+EM  
Sbjct: 442 LISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQM 501

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           SG +P+  T+ S++  CAR+A L+ GK  H YI R  +   +++L  +L++MY + G V 
Sbjct: 502 SGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGL-TINVILGTTLIDMYMKCGCVE 560

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A  VF  M  +   T+ +LI G  + G    +L +F  M K  + P+ +T + VL AC 
Sbjct: 561 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 620

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV EGQ  F  M   + I P ++H+ CMVDL GRAG L +A+E++ +MP TP  A W
Sbjct: 621 HMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATW 680

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LLGAC+ H ++ +G     KL+E +P++ G++VL++N+YA+ G WD + ++R  M   
Sbjct: 681 GALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKH 740

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
            V KIPGC+ ++A  V   FL  D ++     I  +L  +   +K  GY
Sbjct: 741 RVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGY 789


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 191/584 (32%), Positives = 298/584 (51%), Gaps = 52/584 (8%)

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
           +A  L +   +R  + +N++IS +   G  + A   +     +    D  ++  +L A  
Sbjct: 118 DARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK----DAVSWNGMLAAY- 172

Query: 187 EMMDVDFGRV--VHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
               V  GRV       ++  EW     NAL+S Y ++G++  AR LFD+M  RD VSWN
Sbjct: 173 ----VRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWN 228

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT- 303
            M+S YA +G   EA +LF    +     +V TW  +  G  + G  +    +   M   
Sbjct: 229 IMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER 284

Query: 304 -------------QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                        Q   +D    +  +  C +V +                       N 
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW----------------------NT 322

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           ++T Y++   L  A  +F    +K  ++W +ML+ Y+   C+EE+  LF EM R G   N
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
               A +L  CA +A L+ G + H  ++R A +     + N+L+ MY + G + +A++ F
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIR-AGYGVGCFVGNALLAMYFKCGNMEDARNAF 441

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           + M  RD V++ ++IAGY   G G+ AL++F+ M     KPD +T+V VL+ACSHSGLV 
Sbjct: 442 EEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVE 501

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +G   F  M   +G+  + EH+ CM+DL GRAG L +A +++  MP+ P S MW  LLGA
Sbjct: 502 KGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGA 561

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
            +IHRN  +G  AAEK+ E  PEN+G YVL++N+YA++G W    K+R  M + GV+K+P
Sbjct: 562 SRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVP 621

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           G +W++  N    F   D  + + ++IY  L  L   MK AGYV
Sbjct: 622 GFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYV 665



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 195/412 (47%), Gaps = 22/412 (5%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L++ Y  +   + A  L +    R  + WN+++S Y R G   EA  ++     R    D
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----D 254

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            FT+ +V+    +   ++  R V    DA  E +    NA+V+ Y +   +D A+ LF+ 
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRV---FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M  R+  SWNTM++ YA  G+ +EA  +F  M ++    + ++W  +     + G  +  
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEET 367

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L+L   M     +++  A    L  C+ + AL+ G ++HG  +R  YG    V NAL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +C ++  A   F+   E+ +++WN+M++GY      +E+  +F  M  +  +P+ +T+
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLM 473
             +L  C+    ++ G  +   +            +  ++++  R+G++ EA  +  D+ 
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 474 SRRDEVTYTSLIAGYGIQGE---GR-VALKLFEEMNKNQIKPDHVTMVAVLS 521
              D   + +L+    I      GR  A K+FE      ++P++  M  +LS
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFE------LEPENAGMYVLLS 593



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 40/220 (18%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N V    +V  Y    + + A  L      R    WN +++ Y + G   EA  V+  
Sbjct: 283 ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 166 MQSRRIRGDNFTYPSVLKA-------------------CGEMMDVD-FGRVVHSCID--- 202
           M  +    D  ++ ++L A                   CGE ++   F  V+ +C D   
Sbjct: 343 MPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398

Query: 203 -------------ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
                        A +    FV NAL++MY K G ++ AR  F++M ERD VSWNTMI+ 
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 458

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           YA  G  KEA ++F  M+    + + IT   +   C  +G
Sbjct: 459 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSG 498



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 42/243 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++  C  + AL  G QLH   I  G      +   L+  Y       +A    E  
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+ Y R GF  EAL ++  M++   + D+ T   VL AC     V+ G 
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG- 503

Query: 196 VVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
            +       H++ +      +  ++ + G+ G++  A  L   M  E D+  W  ++ A 
Sbjct: 504 -ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGAS 562

Query: 250 ---------------------------------YASKGLWKEAFQLFVEMQEEGV-EVNV 275
                                            YAS G W++A ++ V M+E GV +V  
Sbjct: 563 RIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPG 622

Query: 276 ITW 278
            +W
Sbjct: 623 FSW 625



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%)

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N  +  + R+G+V +A+ +F  M RR   TY +++AGY   G   +A  LF  +     +
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----R 97

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD+ +   +L A + S  + + +  F+ M     +      +  M+  +   GL++ A+ 
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGLVSLARH 152

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
                P    +  W  +L A    RN  + E  A  L  +R E
Sbjct: 153 YFDLAP-EKDAVSWNGMLAAYV--RNGRVEE--ARGLFNSRTE 190



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
            A+++ G+      L  AM       +N+++  Y+ +G++P A S+F  + R D  +Y +
Sbjct: 46  TAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNT 105

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
           L+    +      A  LF+EM       D VT   ++S+ ++ GLV   +  F+
Sbjct: 106 LLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHYFD 155


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 182/598 (30%), Positives = 313/598 (52%), Gaps = 47/598 (7%)

Query: 144 NLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH---S 199
           N ++S + R    A A+ V+  +  S  +R D++++ +++ A G+M ++          S
Sbjct: 129 NAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCS 188

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDV---ARRLFDKMLERDAVSWNTMISAYASKGLW 256
            + +     L V NAL+++Y K    +    AR++ D+M ++D ++W TM+  Y  +G  
Sbjct: 189 VLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDV 248

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
             A  +F E+  +      + WN +  G +++G      EL  RM +++  LD       
Sbjct: 249 NAARSVFEEVDGK----FDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSV 304

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYEN----VRNALITMYSRCKDLRHAYILFKMTA 372
           L AC++ G    GK +HG  +R            V NAL+T+YS+   +  A  +F    
Sbjct: 305 LSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMN 364

Query: 373 EKSIITWNSMLSGYTHLDC-------------------------------AEESAFLFRE 401
            K +++WN++LSGY    C                               +E++  LF +
Sbjct: 365 LKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQ 424

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M    V+P   T A  +  C  +  L+HG++ H ++++   F       N+L+ MYA+ G
Sbjct: 425 MRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCG-FEASNSAGNALLTMYAKCG 483

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            V +A+ VF +M   D V++ ++I+  G  G GR AL+LF++M    I PD ++ + +L+
Sbjct: 484 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 543

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           AC+H+GLV EG   FE M   +GI P  +H+A ++DL GR+G + +A+++I  MP+ PT 
Sbjct: 544 ACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTP 603

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           ++W  +L  C+ + +   G +AA++L    P++ G Y+L++N Y+A G W   A+VR  M
Sbjct: 604 SIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLM 663

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           RD GV+K PGC+W++ G+    FLV DT + +AQE+Y  L  +   M+  GYV   +F
Sbjct: 664 RDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKF 721



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 190/373 (50%), Gaps = 9/373 (2%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +K+ +    +V  Y      N A  + E  + ++ + WN +IS YV+ G  A+A  ++++
Sbjct: 229 DKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRR 288

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-----DACHEWSLFVHNALVSMYG 220
           M S ++  D FT+ SVL AC        G+ VH  I     +   E +L V+NALV++Y 
Sbjct: 289 MVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYS 348

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G++ +A+R+FD M  +D VSWNT++S Y   G   +A ++F  M  +    N ++W  
Sbjct: 349 KGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMV 404

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +  G +  G  +  L+L ++MR ++           + AC  +GALK G+++H   V+  
Sbjct: 405 MVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCG 464

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +    +  NAL+TMY++C  +  A ++F +      ++WN+M+S         E+  LF 
Sbjct: 465 FEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFD 524

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M   G++P+ ++  +IL  C     +  G  +   + R    +     +  L+++  RS
Sbjct: 525 QMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRS 584

Query: 461 GKVPEAKSVFDLM 473
           G++ EA+ +   M
Sbjct: 585 GRIGEARDLIKTM 597



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 146/355 (41%), Gaps = 52/355 (14%)

Query: 349 NALITMYSRCKDLRHAYILFKMT--AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
            +L+   +    LR A   F     A +  +  N+M+S +     A  +  +F  +  SG
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 407 -VEPNYVTIASILPLCARVANL--QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
            + P+  +  +++    ++ NL   H  + HC +L+       L + N+L+ +Y +    
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGA-AAVLSVSNALIALYMKC-DT 213

Query: 464 PEA----KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN-------------- 505
           PEA    + V D M  +D++T+T+++ GY  +G+   A  +FEE++              
Sbjct: 214 PEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGY 273

Query: 506 -----------------KNQIKPDHVTMVAVLSACSHSGLVVEGQK---QFERMTSIYGI 545
                              ++  D  T  +VLSAC+++G  V G+    Q  R+   +  
Sbjct: 274 VQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVP 333

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
              L     +V LY + G +  AK I   M      + W T+L     + ++G  + A E
Sbjct: 334 EAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVS-WNTILSG---YIDSGCLDKAVE 389

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
                  +N   ++++ + Y   G  +   K+   MR   V+    C +  AG +
Sbjct: 390 VFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKP---CDYTYAGAI 441



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 11/186 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--CFLVE 133
           ++A  I  CG++ AL  G+QLHA  +  G E +      L+T YA     N+A   FLV 
Sbjct: 436 TYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVM 495

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             N+   + WN +IS   + G   EAL ++ QM +  I  D  ++ ++L AC     VD 
Sbjct: 496 -PNLD-SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDE 553

Query: 194 GRVVHSCIDACHEWSLFV---HNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMIS 248
           G   H       ++ +     H A L+ + G+ G++  AR L   M  E     W  ++S
Sbjct: 554 G--FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILS 611

Query: 249 AYASKG 254
              + G
Sbjct: 612 GCRTNG 617


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 311/558 (55%), Gaps = 44/558 (7%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQ-MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           WN +I  YV++    EA+ V+ Q ++S     D+ T  SVL A  ++  +      H+ +
Sbjct: 292 WNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFV 351

Query: 202 DACHEWSLFV-HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
                 SL +  NA++ MY +   VD + ++FDKMLERDAVSWNT+ISA+   G  +EA 
Sbjct: 352 IKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEAL 411

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            L  EMQ+                                   Q+  +DSV     L A 
Sbjct: 412 MLVCEMQK-----------------------------------QKFLIDSVTATALLSAA 436

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM--TAEKSIIT 378
           S++  L +GK+ H   +R    ++E + + LI MY++   +R A +LF+   ++++   T
Sbjct: 437 SNLRNLYVGKQTHAYLIRRGI-QFEGMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQAT 495

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN++++GYT     E++  L ++M    V PN VT+ASILP C+ + ++   ++ H + +
Sbjct: 496 WNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGSMGLARQLHGFSI 555

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           RR    +++ +  SL + Y++ G +  A++VF     ++ VTYT+++  YG  G G+ AL
Sbjct: 556 RR-FLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEKNSVTYTTMMMCYGQHGMGKRAL 614

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            L++ M ++ I+PD VT VA+LSAC++SGLV EG + FE M  ++ I P +EH+ C+ D+
Sbjct: 615 TLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIFESMEKVHKIKPSIEHYCCVADM 674

Query: 559 YGRAGLLNKAKEIITKM-PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN--S 615
            GR G + +A E +  +     T  +W +LLG+C+ H +  +G+  A+KLL    +   +
Sbjct: 675 LGRVGRVVEAYEFVKGLGEDANTMEIWGSLLGSCRNHGHFELGKAVAKKLLNMGMDKRMA 734

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           GY+VL++N+YA  G W+K+ +VR  M++ G+ K  GC+WV+     + F+  D  + Q+ 
Sbjct: 735 GYHVLLSNIYAEEGEWEKVDRVRKQMKEKGLHKETGCSWVEIAGFVNCFVSRDEKHPQSS 794

Query: 676 EIYPLLGGLTELMKDAGY 693
           EIY +L  LT  MK AGY
Sbjct: 795 EIYYMLDMLTLDMKYAGY 812



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/547 (22%), Positives = 241/547 (44%), Gaps = 56/547 (10%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP----V 110
           +A   + ++R  ++       +F+  +  C   K +  GK +H+  +      N     +
Sbjct: 98  QALLLYAKMRSNSSCSTFDPYTFSSTLKACALTKDILTGKAIHSHFLRSHSNTNTGPSRI 157

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  YAS   +  A  + +    R  + WN LI  +V+   Y +A+  +  M ++ 
Sbjct: 158 VYNSLLNMYASCQ-HEYALNVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQS 216

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW---SLFVHNALVSMYGKFGQVDV 227
           +     T+ ++  A  ++ D    ++ +  +    +     +FV ++ + M+   G +D 
Sbjct: 217 VMPSPVTFVNLFPALSKLGDSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDY 276

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           AR +FD+ L ++   WNTMI AY       EA  +F++  E                   
Sbjct: 277 ARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQALE------------------- 317

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                          ++E   D V  +  L A S +  +KL ++ H   ++   G    +
Sbjct: 318 ---------------SEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPGSLIII 362

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            NA++ MYSRC  +  +  +F    E+  ++WN+++S +      EE+  L  EM +   
Sbjct: 363 LNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKF 422

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
             + VT  ++L   + + NL  GK+ H Y++RR +  E +  +  L++MYA+SG +  A+
Sbjct: 423 LIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEGMESY--LIDMYAKSGSIRTAE 480

Query: 468 SVF--DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
            +F  +  S RD+ T+ ++IAGY   G    A+ L ++M    + P+ VT+ ++L ACS 
Sbjct: 481 LLFEQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSS 540

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHF----ACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
                 G     R    + I   LE        + D Y + G ++ A+ +  + P    S
Sbjct: 541 M-----GSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTP-EKNS 594

Query: 582 AMWATLL 588
             + T++
Sbjct: 595 VTYTTMM 601



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 203/436 (46%), Gaps = 47/436 (10%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRG--DNFTYPSVLKACGEMMDVDFGRVVHSC 200
           WN +I  ++ +    +AL +Y +M+S       D +T+ S LKAC    D+  G+ +HS 
Sbjct: 83  WNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFSSTLKACALTKDILTGKAIHSH 142

Query: 201 IDACHE-----WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
               H       S  V+N+L++MY    Q + A  +FD M  R+ V+WNT+I ++     
Sbjct: 143 FLRSHSNTNTGPSRIVYNSLLNMYAS-CQHEYALNVFDVMRRRNVVAWNTLILSFVKMNR 201

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
           + +A + F  M  + V  + +T+  +     + G+ + V      MR             
Sbjct: 202 YPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRTVKMFYGFMR------------- 248

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
                      K G +         Y     V ++ I M+S    + +A ++F     K+
Sbjct: 249 -----------KFGDQ---------YVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKN 288

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRS--GVEPNYVTIASILPLCARVANLQHGKEF 433
              WN+M+  Y   +C  E+  +F +   S  GV  + VT+ S+L   +++  ++  ++F
Sbjct: 289 TEIWNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDD-VTLLSVLTAVSQLQQIKLAEQF 347

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H +++ +++    +++ N+++ MY+R   V  +  VFD M  RD V++ ++I+ +   G 
Sbjct: 348 HAFVI-KSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGF 406

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              AL L  EM K +   D VT  A+LSA S+   +  G++    +      F  +E + 
Sbjct: 407 DEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEGMESY- 465

Query: 554 CMVDLYGRAGLLNKAK 569
            ++D+Y ++G +  A+
Sbjct: 466 -LIDMYAKSGSIRTAE 480



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 177/398 (44%), Gaps = 40/398 (10%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           DV L S   ++    +++ +   +Q HA  I        +++  ++  Y+  +  + +  
Sbjct: 325 DVTLLS---VLTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLK 381

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           + +    R  + WN +IS +V++GF  EAL +  +MQ ++   D+ T  ++L A   + +
Sbjct: 382 VFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRN 441

Query: 191 VDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML--ERDAVSWNTMIS 248
           +  G+  H+ +         + + L+ MY K G +  A  LF++    +RD  +WN +I+
Sbjct: 442 LYVGKQTHAYLIRRGIQFEGMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIA 501

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            Y   GL ++A  L  +M  + V  N +T  +I                           
Sbjct: 502 GYTQNGLNEKAILLLKQMLVQNVIPNAVTLASI--------------------------- 534

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   L ACS +G++ L +++HG ++R    +   V  +L   YS+C  + +A  +F
Sbjct: 535 --------LPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVF 586

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
             T EK+ +T+ +M+  Y      + +  L+  M RSG+ P+ VT  +IL  C     + 
Sbjct: 587 LRTPEKNSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVD 646

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
            G +    + +       +  +  + +M  R G+V EA
Sbjct: 647 EGLQIFESMEKVHKIKPSIEHYCCVADMLGRVGRVVEA 684



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 10/160 (6%)

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFR----SGVEPNYVTIASILPLCARVANLQHG 430
           S + WNS++ G+   +   ++  L+ +M      S  +P   T +S L  CA   ++  G
Sbjct: 79  STVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDP--YTFSSTLKACALTKDILTG 136

Query: 431 KEFHCYILR---RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
           K  H + LR           +++NSL+ MYA S +   A +VFD+M RR+ V + +LI  
Sbjct: 137 KAIHSHFLRSHSNTNTGPSRIVYNSLLNMYA-SCQHEYALNVFDVMRRRNVVAWNTLILS 195

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           +        A++ F  M    + P  VT V +  A S  G
Sbjct: 196 FVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLG 235



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 102/253 (40%), Gaps = 49/253 (19%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A I+  C  + ++   +QLH  +I   LEKN  +   L   Y+       A    EN 
Sbjct: 530 TLASILPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCG----AISYAENV 585

Query: 136 NIRYP----LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +R P    + +  ++  Y + G    AL +Y  M    IR D  T+ ++L AC     V
Sbjct: 586 FLRTPEKNSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLV 645

Query: 192 DFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQV------------------------ 225
           D G  +   ++  H+    + +   +  M G+ G+V                        
Sbjct: 646 DEGLQIFESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAYEFVKGLGEDANTMEIWGSLL 705

Query: 226 -------------DVARRLFDKMLERDAVSWNTMIS-AYASKGLWKEAFQLFVEMQEEGV 271
                         VA++L +  +++    ++ ++S  YA +G W++  ++  +M+E+G+
Sbjct: 706 GSCRNHGHFELGKAVAKKLLNMGMDKRMAGYHVLLSNIYAEEGEWEKVDRVRKQMKEKGL 765

Query: 272 EVNV-ITWNTIAG 283
                 +W  IAG
Sbjct: 766 HKETGCSWVEIAG 778


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 191/669 (28%), Positives = 329/669 (49%), Gaps = 47/669 (7%)

Query: 51  GNLSKAFEAFTRIRITA--ASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108
           G+  +A E + R+R      +H     + A ++  CG + AL  G++ H  A+ +GL+ N
Sbjct: 120 GDGGEAVEMYGRMRAEGLLPTHF----TLASVLSACGGLAALGDGRRCHGVAVKVGLDAN 175

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             +   L+  Y       +A  L         + +  ++    + G   +AL ++ +M  
Sbjct: 176 QFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCR 235

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDF--------GRVVHS-CIDACHEWSLFVHNALVSMY 219
             +  D  +  SVL AC +    D+        G+ +H+  +         V N+L+ MY
Sbjct: 236 SGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMY 295

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN----- 274
            K  ++D A ++F+ +     VSWN +I+ +  +G   +A ++   MQE G E N     
Sbjct: 296 TKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYS 355

Query: 275 --------------------------VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
                                     V TWNT+  G  +    +  +EL  RM+ Q    
Sbjct: 356 NLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQP 415

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           D     + L +CS +G L  G+++H ++VR        V + L+ MYS+C  +  A  +F
Sbjct: 416 DRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIF 475

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               E+ ++ WNS++SG T     +E+   F++M  +G+ P   + AS++  C+R++++ 
Sbjct: 476 NKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIP 535

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
           HG++ H  +++   +++++ + ++L++MYA+ G + +A+  FD M  ++ V +  +I GY
Sbjct: 536 HGRQIHAQVMKDG-YDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGY 594

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G G  A++LFE M   + KPD VT +AVL+ CSHSGLV +    F  M + YGI P 
Sbjct: 595 AQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPL 654

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
            EH+ C++D  GRAG   + + +I KMP      +W  LL AC +H N  +G+ AAE L 
Sbjct: 655 AEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLF 714

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
              P+N   YVL++N+YA+ G     + VR  M + GV K  G +W+D  +    F+V D
Sbjct: 715 RIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVAD 774

Query: 669 TSNVQAQEI 677
                  E+
Sbjct: 775 DLGADGGEL 783



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 204/467 (43%), Gaps = 83/467 (17%)

Query: 138 RYPLPWNLLISLYVRD-GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           R  + WN +IS   R  G   EA+ +Y +M++  +   +FT  SVL ACG +  +  GR 
Sbjct: 103 RNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRR 162

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            H   +    + + FV NAL+ MY K G V  A RLF  M   + VS+  M+        
Sbjct: 163 CHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMM-------- 214

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                                      GG  +TG+    L L +RM      +D V+   
Sbjct: 215 ---------------------------GGLAQTGSIDDALRLFARMCRSGVPVDPVSVSS 247

Query: 316 GLGACSHV--------GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
            LGAC+           A +LG+ IH   VR  +G  ++V N+LI MY++C ++  A  +
Sbjct: 248 VLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKV 307

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F+     +I++WN +++G+       ++  +   M  +G EPN VT +++L  C +  + 
Sbjct: 308 FESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARD- 366

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
                                              V  A+++FD +SR    T+ +L++G
Sbjct: 367 -----------------------------------VHSARAMFDKISRPSVTTWNTLLSG 391

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           Y  + + +  ++LF  M    ++PD  T+  +LS+CS  G++  G +Q    +  + +  
Sbjct: 392 YCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFG-RQVHSASVRFLLHN 450

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            +   + +VD+Y + G +  A+ I  KM        W +++    IH
Sbjct: 451 DMFVASGLVDMYSKCGQIGIARSIFNKMTERDV-VCWNSIISGLTIH 496



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 146/312 (46%), Gaps = 34/312 (10%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC-AEESAFLFREMFRSGV 407
           NA ++   R  DL  A  L      ++ ++WN+++S          E+  ++  M   G+
Sbjct: 78  NAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGL 137

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            P + T+AS+L  C  +A L  G+  H   ++  + + +  + N+L+ MY + G V +A 
Sbjct: 138 LPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGL-DANQFVENALLGMYTKCGSVGDAV 196

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS- 526
            +F  M+R +EV++T+++ G    G    AL+LF  M ++ +  D V++ +VL AC+ + 
Sbjct: 197 RLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQAC 256

Query: 527 GLVVEGQKQFERMTSIYGI-----FPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPT 580
                  + F    +I+ +     F   +H    ++D+Y +   +++A ++   +P + T
Sbjct: 257 ATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLP-SVT 315

Query: 581 SAMWATLLGACQIHRNTGIG-EWAAEKLLET---------RPENSGYYVLIA------NM 624
              W  L+        TG G E +  K +E           P    Y  L+A      ++
Sbjct: 316 IVSWNILI--------TGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDV 367

Query: 625 YAATGCWDKLAK 636
           ++A   +DK+++
Sbjct: 368 HSARAMFDKISR 379



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 38/198 (19%)

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G   H  +  RA+ + +   +N+ +    R+G +  A+ +   M RR+ V++ ++I+   
Sbjct: 57  GLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALA 116

Query: 490 IQ-GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK-------------Q 535
              G+G  A++++  M    + P H T+ +VLSAC     + +G++             Q
Sbjct: 117 RSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQ 176

Query: 536 F----------------ERMTSIYGIF-PQLEHFACMVDLYGRAGLLNKAKEIITKM--- 575
           F                + +   YG+  P    F  M+    + G ++ A  +  +M   
Sbjct: 177 FVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRS 236

Query: 576 --PYTPTSAMWATLLGAC 591
             P  P S   +++LGAC
Sbjct: 237 GVPVDPVSV--SSVLGAC 252


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 189/574 (32%), Positives = 295/574 (51%), Gaps = 52/574 (9%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           +R  + +N++IS +   G  + A   +     +    D  ++  +L A      V  GRV
Sbjct: 3   VRDSVTYNVMISSHANHGLVSLARHYFDLAPEK----DAVSWNGMLAAY-----VRNGRV 53

Query: 197 --VHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
                  ++  EW +   NAL+S Y ++G++  AR LFD+M  RD VSWN M+S YA +G
Sbjct: 54  EEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG 113

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR------------ 302
              EA +LF    +     +V TW  +  G  + G  +    +   M             
Sbjct: 114 DMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVA 169

Query: 303 --TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
              Q   +D    +  +  C +V +                       N ++T Y++   
Sbjct: 170 AYIQRRMMDEAKELFNMMPCRNVASW----------------------NTMLTGYAQAGM 207

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           L  A  +F    +K  ++W +ML+ Y+   C+EE+  LF EM R G   N    A +L  
Sbjct: 208 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 267

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           CA +A L+ G + H  ++R A +     + N+L+ MY + G + +A++ F+ M  RD V+
Sbjct: 268 CADIAALECGMQLHGRLIR-AGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVS 326

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           + ++IAGY   G G+ AL++F+ M     KPD +T+V VL+ACSHSGLV +G   F  M 
Sbjct: 327 WNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH 386

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
             +G+  + EH+ CM+DL GRAG L +A +++  MP+ P S MW  LLGA +IHRN  +G
Sbjct: 387 HDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELG 446

Query: 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
             AAEK+ E  PEN+G YVL++N+YA++G W    K+R  M + GV+K+PG +W++  N 
Sbjct: 447 RSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNK 506

Query: 661 FSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
              F   D  + + ++IY  L  L   MK AGYV
Sbjct: 507 VHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYV 540



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 195/412 (47%), Gaps = 22/412 (5%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L++ Y  +   + A  L +    R  + WN+++S Y R G   EA  ++     R    D
Sbjct: 74  LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----D 129

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            FT+ +V+    +   ++  R V    DA  E +    NA+V+ Y +   +D A+ LF+ 
Sbjct: 130 VFTWTAVVSGYAQNGMLEEARRV---FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 186

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M  R+  SWNTM++ YA  G+ +EA  +F  M ++    + ++W  +     + G  +  
Sbjct: 187 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEET 242

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L+L   M     +++  A    L  C+ + AL+ G ++HG  +R  YG    V NAL+ M
Sbjct: 243 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 302

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +C ++  A   F+   E+ +++WN+M++GY      +E+  +F  M  +  +P+ +T+
Sbjct: 303 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 362

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLM 473
             +L  C+    ++ G  +   +            +  ++++  R+G++ EA  +  D+ 
Sbjct: 363 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 422

Query: 474 SRRDEVTYTSLIAGYGIQGE---GR-VALKLFEEMNKNQIKPDHVTMVAVLS 521
              D   + +L+    I      GR  A K+FE      ++P++  M  +LS
Sbjct: 423 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFE------LEPENAGMYVLLS 468



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 40/220 (18%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N V    +V  Y    + + A  L      R    WN +++ Y + G   EA  V+  
Sbjct: 158 ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 217

Query: 166 MQSRRIRGDNFTYPSVLKA-------------------CGEMMDVD-FGRVVHSCID--- 202
           M  +    D  ++ ++L A                   CGE ++   F  V+ +C D   
Sbjct: 218 MPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 273

Query: 203 -------------ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
                        A +    FV NAL++MY K G ++ AR  F++M ERD VSWNTMI+ 
Sbjct: 274 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 333

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           YA  G  KEA ++F  M+    + + IT   +   C  +G
Sbjct: 334 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSG 373



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 41/236 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++  C  + AL  G QLH   I  G      +   L+  Y       +A    E  
Sbjct: 260 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 319

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+ Y R GF  EAL ++  M++   + D+ T   VL AC     V+ G 
Sbjct: 320 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG- 378

Query: 196 VVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
            +       H++ +      +  ++ + G+ G++  A  L   M  E D+  W  ++ A 
Sbjct: 379 -ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGAS 437

Query: 250 ---------------------------------YASKGLWKEAFQLFVEMQEEGVE 272
                                            YAS G W++A ++ V M+E GV+
Sbjct: 438 RIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVK 493


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 319/634 (50%), Gaps = 43/634 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  +  L   + +H  A   GL  +  +   LV  YA  + + +A  +    
Sbjct: 131 TFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRM 190

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +++ Y   G Y++ +     MQ       + T  ++L    +   +  GR
Sbjct: 191 PARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNAS-TLVALLPLLAQHGALSQGR 249

Query: 196 VVHS-CIDAC----HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
            VH+  + AC    H+  + V  AL+ MY K G +  A R+F+ M  R            
Sbjct: 250 AVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR------------ 297

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE-TYLD 309
                                  N +TW+ + GG +  G       L   M  Q   +L 
Sbjct: 298 -----------------------NEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLS 334

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
             +    L AC+++  L LGK++H    +          N+L++MY++   +  A  LF 
Sbjct: 335 PTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFD 394

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
               K  +++++++SGY     A+E+  +FR+M    V+P+  T+ S++P C+ +A LQH
Sbjct: 395 QMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQH 454

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK  H  ++ R + +E   + N+L++MYA+ G++  ++ +FD+M  RD V++ ++IAGYG
Sbjct: 455 GKCGHGSVIVRGIASE-TSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYG 513

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
           I G G+ A  LF +M     +PD VT + ++SACSHSGLV EG++ F  M   YGI P++
Sbjct: 514 IHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRM 573

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH+  MVDL  R G L++A + I  MP      +W  LLGAC++H+N  +G+  +  + +
Sbjct: 574 EHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQ 633

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             PE +G +VL++N+++A G +D+ A+VR   ++ G +K PGC+W++       F+  D 
Sbjct: 634 LGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDR 693

Query: 670 SNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
           S+ Q+ EIY  L  +   +   GY     F  ++
Sbjct: 694 SHAQSSEIYQELDNILVDINKLGYRADTSFVLQD 727



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 226/467 (48%), Gaps = 67/467 (14%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACH------EWSLFVHNALVSMYGKFGQVDV 227
           +N+T+P VLKAC  ++D+   R VH     CH         LFV  ALV +Y K      
Sbjct: 128 NNYTFPFVLKACSALLDLRSARAVH-----CHAARAGLHADLFVSTALVDVYAKCASFRH 182

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A  +F +M  RD V+WN M++ YA  G + +     + MQ++                  
Sbjct: 183 AATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAP--------------N 228

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC----YGE 343
                 +L LL++                       GAL  G+ +H  +VR C    + +
Sbjct: 229 ASTLVALLPLLAQH----------------------GALSQGRAVHAYSVRACSLHDHKD 266

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V  AL+ MY++C  L +A  +F+  A ++ +TW++++ G+       E+  LF++M 
Sbjct: 267 GVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDML 326

Query: 404 RSG---VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
             G   + P   ++AS L  CA +++L  GK+ H  + +  +  + L   NSL+ MYA++
Sbjct: 327 AQGLCFLSPT--SVASALRACANLSDLCLGKQLHALLAKSGLHTD-LTAGNSLLSMYAKA 383

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G + +A ++FD M  +D V+Y++L++GY   G+   A ++F +M    ++PD  TMV+++
Sbjct: 384 GLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLI 443

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
            ACSH   +  G+     +  + GI  +      ++D+Y + G ++ +++I   MP    
Sbjct: 444 PACSHLAALQHGKCGHGSVI-VRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDI 502

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETR-----PENSGYYVLIA 622
            + W T++    IH   G+G+ A    L+ +     P++  +  LI+
Sbjct: 503 VS-WNTMIAGYGIH---GLGKEATALFLDMKHQACEPDDVTFICLIS 545



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 6/235 (2%)

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           C DL  A  LF       I  +N+++  Y+    A           R   +PN  T   +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           L  C+ + +L+  +  HC+   RA  +  L +  +LV++YA+      A +VF  M  RD
Sbjct: 136 LKACSALLDLRSARAVHCHA-ARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V + +++AGY + G+    +     M  +   P+  T+VA+L   +  G + +G+    
Sbjct: 195 VVAWNAMLAGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQHGALSQGRAVHA 253

Query: 538 ---RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
              R  S++     +     ++D+Y + G L  A  +   M        W+ L+G
Sbjct: 254 YSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR-NEVTWSALVG 307


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 212/722 (29%), Positives = 359/722 (49%), Gaps = 72/722 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G  + A   +  +R+      + L SF  ++  C K++ +  G +LH+  + LG  
Sbjct: 120 YVSNGEPASALALYWNMRVEGVP--LGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 177

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIR-YPLPWNLLISLYVRDGFYAEALCVYKQ 165
               +V  LV+ YA     + A  L +    +   + WN ++S Y   G   E L ++++
Sbjct: 178 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFRE 237

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFG 223
           M       +++T  S L AC        G+ +H+ +   + H   L+V NAL++MY + G
Sbjct: 238 MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCG 297

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++  A R+  +M   D V+WN++I  Y    ++KEA + F +M   G + + ++  +I  
Sbjct: 298 KMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIA 357

Query: 284 GCLRTGNFKGVLEL-------------------------------LSR--MRTQETYLDS 310
              R  N    +EL                               + R  +R  +  L S
Sbjct: 358 ASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLIS 417

Query: 311 VATVIGLGACS--HVGALKLGKE-----------IHGSAVRG--------------CY-- 341
             TVI   A +  HV AL+L ++           I GS +R               C+  
Sbjct: 418 WTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHIL 477

Query: 342 --GEYENV-RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             G  + V +N L+ +Y +C+++ +A  +F+    K +++W SM+S         E+  L
Sbjct: 478 RKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVEL 537

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           FR M  +G+  + V +  IL   A ++ L  G+E HCY+LR+    E  +   ++V+MYA
Sbjct: 538 FRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAV-AVVDMYA 596

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
             G +  AK+VFD + R+  + YTS+I  YG+ G G+ A++LF++M    + PDH++ +A
Sbjct: 597 CCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLA 656

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT 578
           +L ACSH+GL+ EG+   + M   Y + P  EH+ C+VD+ GRA  + +A E +  M   
Sbjct: 657 LLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTE 716

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638
           PT+ +W  LL AC+ H    IGE AA++LLE  P+N G  VL++N++A  G W+ + KVR
Sbjct: 717 PTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVR 776

Query: 639 TCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT-ELMKDAGYVVKE 697
             M+  G+ K PGC+W++       F   D S+ +++EIY  L  +T +L ++ GYV   
Sbjct: 777 AKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADT 836

Query: 698 EF 699
           +F
Sbjct: 837 KF 838



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 220/470 (46%), Gaps = 77/470 (16%)

Query: 58  EAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVT 117
           EAF R+ ++  +  V  ++FA+++  CGK +A++Q K                       
Sbjct: 66  EAFQRLDVSENNSPV--EAFAYVLELCGKRRAVSQEK----------------------- 100

Query: 118 FYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFT 177
                        + +    R    WN +I  YV +G  A AL +Y  M+   +     +
Sbjct: 101 -------------VFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSS 147

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           +P++LKAC ++ D+  G  +HS  +   +  + F+ NALVSMY K   +  ARRLFD   
Sbjct: 148 FPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 207

Query: 237 ER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           E+ DAV WN+++S+Y++ G   E  +LF EM   G   N                     
Sbjct: 208 EKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN--------------------- 246

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITM 354
                         S   V  L AC      KLGKEIH S ++      E  V NALI M
Sbjct: 247 --------------SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAM 292

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y+RC  +  A  + +      ++TWNS++ GY      +E+   F +M  +G + + V++
Sbjct: 293 YTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSM 352

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
            SI+    R++NL  G E H Y+++   ++ +L + N+L++MY++          F  M 
Sbjct: 353 TSIIAASGRLSNLLAGMELHAYVIKHG-WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMH 411

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            +D +++T++IAGY        AL+LF ++ K +++ D + + ++L A S
Sbjct: 412 DKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 461



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 6/305 (1%)

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
           ++F EM +         WNT+ G  +  G     L L   MR +   L   +    L AC
Sbjct: 100 KVFDEMPDR----TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKAC 155

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK-SIITW 379
           + +  ++ G E+H   V+  Y     + NAL++MY++  DL  A  LF    EK   + W
Sbjct: 156 AKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLW 215

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           NS+LS Y+    + E+  LFREM  +G  PN  TI S L  C   +  + GKE H  +L+
Sbjct: 216 NSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLK 275

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
            +  +  L + N+L+ MY R GK+P+A+ +   M+  D VT+ SLI GY      + AL+
Sbjct: 276 SSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALE 335

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            F +M     K D V+M ++++A      ++ G  +       +G    L+    ++D+Y
Sbjct: 336 FFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGM-ELHAYVIKHGWDSNLQVGNTLIDMY 394

Query: 560 GRAGL 564
            +  L
Sbjct: 395 SKCNL 399


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  322 bits (826), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 187/610 (30%), Positives = 325/610 (53%), Gaps = 40/610 (6%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N V    L++    +     + +  E +  +  + W   IS +VR+G   EAL ++ +
Sbjct: 115 ERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFR 174

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQ 224
           +    +R ++ T+ SV++ACGE+ D   G  ++   + A  E  L V N+L+++  + G+
Sbjct: 175 LLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGE 234

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +D+ARR+FD+M +RD VSW  ++ AY   G  +EA ++F EM E     N I+W+ +   
Sbjct: 235 IDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPER----NEISWSAMIAR 290

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVAT-VIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
             ++G  +  L+L S+M  QE +  +++     L A + + AL  G  IHG   +    +
Sbjct: 291 YSQSGYAEEALKLFSKM-VQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDK 349

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM--------------------- 382
              + ++LI +Y +C       ++F +  EK+++ WNSM                     
Sbjct: 350 DVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIP 409

Query: 383 ----------LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
                     J+GY   +  E+   +F  +  SG  PN  T +S+L  CA +A+L  G  
Sbjct: 410 EKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMN 469

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  I++  +    + +  +L +MYA+ G +  +K VF+ M  ++E+++T +I G    G
Sbjct: 470 VHGKIIKLGI-QYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESG 528

Query: 493 EGRVALKLFEEMNK-NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
               +L LFEEM + +++ P+ + +++VL ACSH GLV +G   F  M  +YGI P+ +H
Sbjct: 529 FAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKH 588

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + C+VDL  R+G L +A+E I  +P+ P +  WA LL  C+ +++  I E  A+KL +  
Sbjct: 589 YTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLA 648

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
             NS  YVL++N+YA+ G W  ++ +R  MR+ G++K  GC+WV+  N    F  +D S+
Sbjct: 649 ENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDGSH 708

Query: 672 VQAQEIYPLL 681
            Q+ EIY  L
Sbjct: 709 SQSDEIYGTL 718



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 190/431 (44%), Gaps = 70/431 (16%)

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           L V N ++S Y ++G +  AR LFD+M ER+ VSW+ +IS     G  +E+   F    E
Sbjct: 87  LVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYF----E 142

Query: 269 EGVEVNVITWNTIAGGCLRTG-NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                NV++W     G +R G NF+  L+L  R+       + V     + AC  +G   
Sbjct: 143 RNPFQNVVSWTAAISGFVRNGLNFEA-LKLFFRLLESGVRPNDVTFTSVVRACGELGDFG 201

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITM-------------------------------YS 356
           LG  I G  V+  +  Y +V N+LIT+                               Y 
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
              DLR A  +F    E++ I+W++M++ Y+    AEE+  LF +M + G +PN    A 
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
            L   A +  L  G   H ++ +  + ++ + + +SL+++Y + GK  + + VFDL+  +
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGI-DKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK 380

Query: 477 DEVTYTSLIAGYGIQGE-------------------GRV------------ALKLFEEMN 505
           + V + S++ GY I G                    G +             L++F  + 
Sbjct: 381 NVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLL 440

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
            +   P+  T  +VL AC+    + +G     ++  + GI   +     + D+Y + G +
Sbjct: 441 VSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKL-GIQYDIFVGTALTDMYAKCGDI 499

Query: 566 NKAKEIITKMP 576
             +K++  +MP
Sbjct: 500 GSSKQVFERMP 510



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 134/340 (39%), Gaps = 61/340 (17%)

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           S+ G +  G  +H   ++  +     +   L+ +Y  C+       + K      ++  N
Sbjct: 32  SNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSN 91

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
            M+S Y       ++  LF EM     E N V+                           
Sbjct: 92  CMISAYVQWGNLVQARLLFDEM----PERNEVS--------------------------- 120

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
                    W++L+    + G+V E+   F+    ++ V++T+ I+G+   G    ALKL
Sbjct: 121 ---------WSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKL 171

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHF----AC 554
           F  + ++ ++P+ VT  +V+ AC   G        F    SI G+  +   EH+      
Sbjct: 172 FFRLLESGVRPNDVTFTSVVRACGELG-------DFGLGMSILGLVVKAGFEHYLSVSNS 224

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           ++ L  R G ++ A+ +  +M      + W  +L A   +  TG     A ++ +  PE 
Sbjct: 225 LITLSLRMGEIDLARRVFDRMEKRDVVS-WTAILDA---YVETGDLR-EARRIFDEMPER 279

Query: 615 S--GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           +   +  +IA  Y+ +G  ++  K+ + M   G +    C
Sbjct: 280 NEISWSAMIAR-YSQSGYAEEALKLFSKMVQEGFKPNISC 318



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           K  E F  + ++  + +    +F+ ++  C  + +L +G  +H   I LG++ +  +   
Sbjct: 431 KVLEVFNTLLVSGQTPNK--STFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTA 488

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ-SRRIRG 173
           L   YA      ++  + E    +  + W ++I      GF  E+L ++++M+ +  +  
Sbjct: 489 LTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAP 548

Query: 174 DNFTYPSVLKACGEMMDVDFG 194
           +     SVL AC     VD G
Sbjct: 549 NELMLLSVLFACSHCGLVDKG 569


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 204/687 (29%), Positives = 341/687 (49%), Gaps = 76/687 (11%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   GNL  A E    +       ++   +++ ++  C   K+L  GK++H+   +  + 
Sbjct: 76  FCQLGNLENAME----LVCMCQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVA 131

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            + VL  KLV+ YA+         + +    +    WN ++S Y + G + E++C++K M
Sbjct: 132 VDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM 191

Query: 167 QSRRIRGDNFTYPSVL--KACG---------------------------EMM----DVDF 193
             + I G      S L  K C                            +MM    DVD 
Sbjct: 192 VEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDL 251

Query: 194 GRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             ++   +   +  +L +  A+ S+  K               ER     NT++  Y+  
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIK------------STFERRINFSNTLLDMYSKC 299

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G    A ++F +M E     NV++W ++  G  R G   G + LL +M  +   LD VAT
Sbjct: 300 GDLDGALRVFEKMGER----NVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVAT 355

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC+  G+L  GK++H             V NAL+ MY++C  +  A  +F     
Sbjct: 356 TSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVV 415

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K II+WN+M+                       ++P+  T+A ILP CA ++ L+ GKE 
Sbjct: 416 KDIISWNTMIGE---------------------LKPDSRTMACILPACASLSALERGKEI 454

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H YILR   ++    + N+LV++Y + G +  A+ +FD++  +D V++T +I+GYG+ G 
Sbjct: 455 HGYILRNG-YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGY 513

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  A+  F EM    I+PD V+ +++L ACSHSGL+ +G + F  M + + I P+LEH+A
Sbjct: 514 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 573

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVDL  R G L+KA E I  +P  P + +W  LL  C+I+ +  + E  AE++ E  PE
Sbjct: 574 CMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPE 633

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV-DDTSNV 672
           N+GYYVL+AN+YA    W+++ ++R  +   G+RK PGC+W++     + F+  +++S+ 
Sbjct: 634 NTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHP 693

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEF 699
            +++I  LL  +   MK+ GY  K ++
Sbjct: 694 HSKKIESLLKKMRRKMKEEGYFPKTKY 720


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 297/551 (53%), Gaps = 40/551 (7%)

Query: 146 LISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC 204
           +IS +V++  + +++ V+  M      R D  T  +VL A  E+ ++  G  +      C
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 205 HEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             +S + +   L+S++ K G+V++AR LF ++ ++D +S N MIS +   G  +++ +LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSH 322
            E+   G  V                                    S +T++GL    S 
Sbjct: 121 KELLSSGERV------------------------------------SSSTIVGLIPVYSP 144

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            G   L   IHG  V+     + +V  AL T+Y R  ++  A  LF  +AEK++ +WN+M
Sbjct: 145 FGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAM 204

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SG T     + +  LF+ M ++ V PN VT+ SIL  CA++  L  G+  H  I +   
Sbjct: 205 ISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLI-KSNR 263

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F  ++ +  +L++MYA+ G +  A+ +FDLM  ++EVT+ ++I+GYG+ G G+ ALKLF 
Sbjct: 264 FESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFY 323

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M  + +KP  +T ++VL ACSH+GLV EG   F  M   +G  P  EH+ACMVD+ GRA
Sbjct: 324 DMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRA 383

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G L KA E I  MP  P   +W  LLGAC IH++T +   A+EKL E  PEN GYYVL++
Sbjct: 384 GQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMS 443

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+Y+    + + A VR   +   + K PGC  ++ G V   F   D S+ Q++ IY  L 
Sbjct: 444 NIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELD 503

Query: 683 GLTELMKDAGY 693
            LT  M +AG+
Sbjct: 504 KLTGKMTEAGF 514



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 1/198 (0%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           +H   + LG+  +  +   L T Y   +    A  L + S  +    WN +IS   ++G 
Sbjct: 154 IHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGL 213

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNA 214
              A+ +++ MQ   +  +  T  S+L AC ++  +  G  VHS I +   E +++V  A
Sbjct: 214 TDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTA 273

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+ MY K G + VAR LFD M E++ V+WN MIS Y   G  +EA +LF +M    V+  
Sbjct: 274 LIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPT 333

Query: 275 VITWNTIAGGCLRTGNFK 292
            +T+ ++   C   G  K
Sbjct: 334 GLTFLSVLYACSHAGLVK 351



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 6/206 (2%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+  C ++ AL+ G+ +H+   +   E N  +   L+  YA       A  L +    + 
Sbjct: 239 ILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKN 298

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR-VVH 198
            + WN +IS Y   G   EAL ++  M S  ++    T+ SVL AC     V  G  + H
Sbjct: 299 EVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFH 358

Query: 199 SCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---YASK 253
           + +       L  H A +V + G+ GQ+  A      M +E     W  ++ A   +   
Sbjct: 359 TMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDT 418

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWN 279
            L   A +   E+  E +   V+  N
Sbjct: 419 NLAHVASEKLFELDPENIGYYVLMSN 444


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 187/610 (30%), Positives = 325/610 (53%), Gaps = 40/610 (6%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N V    L++    +     + +  E +  +  + W   IS +VR+G   EAL ++ +
Sbjct: 115 ERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFR 174

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQ 224
           +    +R ++ T+ SV++ACGE+ D   G  ++   + A  E  L V N+L+++  + G+
Sbjct: 175 LLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGE 234

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +D+ARR+FD+M +RD VSW  ++ AY   G  +EA ++F EM E     N I+W+ +   
Sbjct: 235 IDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPER----NEISWSAMIAR 290

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVAT-VIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
             ++G  +  L+L S+M  QE +  +++     L A + + AL  G  IHG   +    +
Sbjct: 291 YSQSGYAEEALKLFSKM-VQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDK 349

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT---------------- 387
              + ++LI +Y +C       ++F +  EK+++ WNSM+ GY+                
Sbjct: 350 DVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIP 409

Query: 388 ---------------HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
                            +  E+   +F  +  SG  PN  T +S+L  CA +A+L  G  
Sbjct: 410 EKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMN 469

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  I++  +    + +  +L +MYA+ G +  +K VF+ M  ++E+++T +I G    G
Sbjct: 470 VHGKIIKLGI-QYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESG 528

Query: 493 EGRVALKLFEEMNK-NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
               +L LFEEM + +++ P+ + +++VL ACSH GLV +G   F  M  +YGI P+ +H
Sbjct: 529 FAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKH 588

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + C+VDL  R+G L +A+E I  +P+ P +  WA LL  C+ +++  I E  A+KL +  
Sbjct: 589 YTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLA 648

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
             NS  YVL++N+YA+ G W  ++ +R  MR+ G++K  GC+WV+  N    F  +D S+
Sbjct: 649 ENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDGSH 708

Query: 672 VQAQEIYPLL 681
            Q+ EIY  L
Sbjct: 709 SQSNEIYGTL 718



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 190/431 (44%), Gaps = 70/431 (16%)

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           L V N ++S Y ++G +  AR LFD+M ER+ VSW+ +IS     G  +E+   F    E
Sbjct: 87  LVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYF----E 142

Query: 269 EGVEVNVITWNTIAGGCLRTG-NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                NV++W     G +R G NF+  L+L  R+       + V     + AC  +G   
Sbjct: 143 RNPFQNVVSWTAAISGFVRNGLNFEA-LKLFFRLLESGVRPNDVTFTSVVRACGELGDFG 201

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITM-------------------------------YS 356
           LG  I G  V+  +  Y +V N+LIT+                               Y 
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
              DLR A  +F    E++ I+W++M++ Y+    AEE+  LF +M + G +PN    A 
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
            L   A +  L  G   H ++ +  + ++ + + +SL+++Y + GK  + + VFDL+  +
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGI-DKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK 380

Query: 477 DEVTYTSLIAGYGIQGE-------------------GRV------------ALKLFEEMN 505
           + V + S++ GY I G                    G +             L++F  + 
Sbjct: 381 NVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLL 440

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
            +   P+  T  +VL AC+    + +G     ++  + GI   +     + D+Y + G +
Sbjct: 441 VSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKL-GIQYDIFVGTALTDMYAKCGDI 499

Query: 566 NKAKEIITKMP 576
             +K++  +MP
Sbjct: 500 GSSKQVFERMP 510



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 134/340 (39%), Gaps = 61/340 (17%)

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           S+ G +  G  +H   ++  +     +   L+ +Y  C+       + K      ++  N
Sbjct: 32  SNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSN 91

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
            M+S Y       ++  LF EM     E N V+                           
Sbjct: 92  CMISAYVQWGNLVQARLLFDEM----PERNEVS--------------------------- 120

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
                    W++L+    + G+V E+   F+    ++ V++T+ I+G+   G    ALKL
Sbjct: 121 ---------WSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKL 171

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHF----AC 554
           F  + ++ ++P+ VT  +V+ AC   G        F    SI G+  +   EH+      
Sbjct: 172 FFRLLESGVRPNDVTFTSVVRACGELG-------DFGLGMSILGLVVKAGFEHYLSVSNS 224

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           ++ L  R G ++ A+ +  +M      + W  +L A   +  TG     A ++ +  PE 
Sbjct: 225 LITLSLRMGEIDLARRVFDRMEKRDVVS-WTAILDA---YVETGDLR-EARRIFDEMPER 279

Query: 615 S--GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           +   +  +IA  Y+ +G  ++  K+ + M   G +    C
Sbjct: 280 NEISWSAMIAR-YSQSGYAEEALKLFSKMVQEGFKPNISC 318



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           K  E F  + ++  + +    +F+ ++  C  + +L +G  +H   I LG++ +  +   
Sbjct: 431 KVLEVFNTLLVSGQTPNK--STFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTA 488

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ-SRRIRG 173
           L   YA      ++  + E    +  + W ++I      GF  E+L ++++M+ +  +  
Sbjct: 489 LTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAP 548

Query: 174 DNFTYPSVLKACGEMMDVDFG 194
           +     SVL AC     VD G
Sbjct: 549 NELMLLSVLFACSHCGLVDKG 569


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 198/609 (32%), Positives = 315/609 (51%), Gaps = 41/609 (6%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           + + F+A         S   + D F +  +I  CG +  +  G  +H      G + +  
Sbjct: 90  IGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTF 149

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  Y +      A  + +    R  + WN +I+ Y R+    +A+ VY +M    
Sbjct: 150 VQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVG 209

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHNALVSMYGKFGQVDVAR 229
           +  D  T  SVL ACG + +V+ GR VH+ +     W ++ V NALV MY K GQ+    
Sbjct: 210 VEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQM---- 265

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
                                      KEA+ L   M ++    +V+TW T+  G +  G
Sbjct: 266 ---------------------------KEAWLLAKGMDDK----DVVTWTTLINGYILNG 294

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
           + +  L L   M+ +    +SV+    L AC  +  L  GK +H  A+R        V  
Sbjct: 295 DARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVET 354

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           ALI MY++C     +Y +F  T++K    WN++LSG+     A E+  LF++M    V+P
Sbjct: 355 ALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQP 414

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           ++ T  S+LP  A +A+LQ     HCY++R   F   L + + LV++Y++ G +  A  +
Sbjct: 415 DHATFNSLLPAYAILADLQQAMNIHCYLIRSG-FLYRLEVASILVDIYSKCGSLGYAHQI 473

Query: 470 FDLMSRRDE--VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           F+++S +D+  + ++++IA YG  G G++A+KLF +M ++ +KP+HVT  +VL ACSH+G
Sbjct: 474 FNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQMVQSGVKPNHVTFTSVLHACSHAG 533

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           LV EG   F  M   + I   ++H+ CM+DL GRAG LN A  +I  MP TP  A+W  L
Sbjct: 534 LVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLGRAGRLNDAYNLIRTMPITPNHAVWGAL 593

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC IH N  +GE AA    +  PEN+G YVL+A +YAA G W    +VR  + ++G+R
Sbjct: 594 LGACVIHENVELGEVAARWTFKLEPENTGNYVLLAKLYAAVGRWGDAERVRDMVNEVGLR 653

Query: 648 KIPGCAWVD 656
           K+P  + ++
Sbjct: 654 KLPAHSLIE 662



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/487 (28%), Positives = 244/487 (50%), Gaps = 47/487 (9%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           ++ K+LHA  + LG+  +  L  KL T YA     + A  L +  +      WN ++ +Y
Sbjct: 28  SETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMY 87

Query: 151 VRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWS 208
           V+ G   +AL ++ +M  S R   D FTYP V+KACG++  +D G  +H       ++  
Sbjct: 88  VQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSD 147

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
            FV N L++MY   G+ + A+ +FD M ER  +SWNTMI+ Y      ++A  ++  M +
Sbjct: 148 TFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMD 207

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
            GVE                                    D    V  L AC  +  ++L
Sbjct: 208 VGVEP-----------------------------------DCATVVSVLPACGLLKNVEL 232

Query: 329 GKEIHGSAV-RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
           G+E+H     +G +G    VRNAL+ MY +C  ++ A++L K   +K ++TW ++++GY 
Sbjct: 233 GREVHTLVQEKGFWGNIV-VRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYI 291

Query: 388 HLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
            L+    SA +   M +  GV+PN V+IAS+L  C  +  L HGK  H + +R+ + +E 
Sbjct: 292 -LNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESE- 349

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           +++  +L+ MYA+      +  VF   S++    + +L++G+      R A++LF++M  
Sbjct: 350 VIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLV 409

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY--GIFPQLEHFACMVDLYGRAGL 564
             ++PDH T  ++L A +   ++ + Q+       +   G   +LE  + +VD+Y + G 
Sbjct: 410 KDVQPDHATFNSLLPAYA---ILADLQQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGS 466

Query: 565 LNKAKEI 571
           L  A +I
Sbjct: 467 LGYAHQI 473



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 167/420 (39%), Gaps = 71/420 (16%)

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
            N+ + L T Y++C    +A  LF   ++  + +WN+M+  Y  +    ++  LF EM  
Sbjct: 46  SNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLG 105

Query: 405 SG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           SG   P+  T   ++  C  ++ +  G   H    +   ++    + N+L+ MY  +G+ 
Sbjct: 106 SGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFG-YDSDTFVQNTLLAMYMNAGEK 164

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
             A+ VFD M  R  +++ ++I GY        A+ ++  M    ++PD  T+V+VL AC
Sbjct: 165 EAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPAC 224

Query: 524 SHSGLV--VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA---------KEII 572
              GL+  VE  ++   +    G +  +     +VD+Y + G + +A         K+++
Sbjct: 225 ---GLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVV 281

Query: 573 TKMPYT-------------------------PTSAMWATLLGACQ--IHRNTG--IGEWA 603
           T                              P S   A+LL AC   ++ N G  +  WA
Sbjct: 282 TWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWA 341

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW--------- 654
             + +E+          + NMYA   C +   KV      +G  K     W         
Sbjct: 342 IRQKIESEVI---VETALINMYAKCNCGNLSYKVF-----MGTSKKRTAPWNALLSGFIQ 393

Query: 655 ----VDAGNVFSPFLVDDTSNVQAQ-----EIYPLLGGLTELMKDAGYVVKEEFCSEEEI 705
                +A  +F   LV D     A        Y +L  L + M    Y+++  F    E+
Sbjct: 394 NRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYRLEV 453


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 192/629 (30%), Positives = 321/629 (51%), Gaps = 66/629 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA  +  CG +++   GKQ+H+  IA G + +  +   L+  YA      +   + +  
Sbjct: 177 TFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 236

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR--IRGDNFTYPSVLKACGEMMDVDF 193
             R  + WN +IS   + G + +AL ++ +MQ     I+ D FT+ ++L  C    + + 
Sbjct: 237 GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQ 296

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR +H+  I A    ++ V   LV MY + G+++ A+ +F++M ER+A S          
Sbjct: 297 GRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS---------- 346

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                                    WN++  G  + G  +  L L  +M+      D  +
Sbjct: 347 -------------------------WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFS 381

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               L +C  +   + G+E+H   VR    E   ++  L+ MY++C  + +A+ ++  T 
Sbjct: 382 LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTI 441

Query: 373 EKSIIT--WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
           +K   T  WNS+L+GY +    +ES   F EM  S +E + +T+ +I+ L          
Sbjct: 442 KKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNL---------- 491

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
                           L+L  +LV+MY++ G + +A++VFD M+ ++ V++ ++I+GY  
Sbjct: 492 ----------------LVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSK 535

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G  + AL L+EEM K  + P+ VT +A+LSACSH+GLV EG + F  M   Y I  + E
Sbjct: 536 HGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAE 595

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL GRAG L  AKE + KMP  P  + W  LLGAC++H++  +G  AA++L E 
Sbjct: 596 HYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL 655

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P+N G YV+++N+YAA G W ++  +R  M+  GV+K PG +W++  +    F     +
Sbjct: 656 DPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKT 715

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           + + +EIY  L  LT   K  GY+    F
Sbjct: 716 HPKTEEIYNNLRHLTLQSKGLGYIPDTSF 744



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 153/552 (27%), Positives = 264/552 (47%), Gaps = 55/552 (9%)

Query: 66  TAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125
           T  + DV    ++ +I  C    +  +GK +H   I+ G   +  L+ K++  YA     
Sbjct: 63  TKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCL 122

Query: 126 NNACF---LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
           ++ C+   L E    R    WN +I  Y R   Y EA  ++ +M    +  DNFT+ S L
Sbjct: 123 DDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASAL 182

Query: 183 KACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
           + CG +   D G+ VHS + AC  +   FV NAL+ MY K    +   ++FD+M ER+ V
Sbjct: 183 RVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQV 242

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQ--EEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
           +WN++ISA A  G + +A  LF+ MQ  E+G++ +  T+ T+                  
Sbjct: 243 TWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTL------------------ 284

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
                            L  C++      G++IH   +R    +   V   L+ MYS C 
Sbjct: 285 -----------------LTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECG 327

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
            L +A  +F   AE++  +WNSM+ GY      +E+  LF++M  +G++P+  +++S+L 
Sbjct: 328 RLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLS 387

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
            C  +++ Q G+E H +I+R  M  E  +L   LV+MYA+ G +  A  V+D   ++D  
Sbjct: 388 SCVSLSDSQKGRELHNFIVRNTM-EEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRN 446

Query: 480 T--YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
           T  + S++AGY  +G  + +   F EM ++ I+ D +TMV +++       +V+   +  
Sbjct: 447 TALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCG 506

Query: 538 RMTSIYGIFPQLE-----HFACMVDLYGRAGLLNKAKEIITKMPYT---PTSAMWATLLG 589
            +T    +F  +       +  M+  Y + G   +A  +  +MP     P    +  +L 
Sbjct: 507 AITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILS 566

Query: 590 ACQIHRNTGIGE 601
           AC    +TG+ E
Sbjct: 567 ACS---HTGLVE 575



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 200/433 (46%), Gaps = 36/433 (8%)

Query: 239 DAVSWNTMISAYASKGLWKE---AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           DA     ++  YA  G   +   A +LF EM E     N+  WNT+     R  ++    
Sbjct: 105 DAYLMTKILMLYARSGCLDDLCYARKLFEEMPER----NLTAWNTMILAYARVDDYMEAW 160

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            +  RM       D+      L  C  + +   GK++H   +   +     V NALI MY
Sbjct: 161 GIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMY 220

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS--GVEPNYVT 413
           ++C D      +F    E++ +TWNS++S         ++  LF  M  S  G++P+  T
Sbjct: 221 AKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFT 280

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
             ++L LCA   N   G++ H +++ RA   +++++   LV MY+  G++  AK +F+ M
Sbjct: 281 FTTLLTLCANQRNDNQGRQIHAHLI-RANITKNIIVETELVHMYSECGRLNYAKEIFNRM 339

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           + R+  ++ S+I GY   GE + AL+LF++M  N IKPD  ++ ++LS+C     + + Q
Sbjct: 340 AERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVS---LSDSQ 396

Query: 534 KQFERMTSIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITK-MPYTPTSAMWATLLGA 590
           K  E    I     + E      +VD+Y + G ++ A ++  + +     +A+W ++L  
Sbjct: 397 KGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG 456

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVL--------------IANMYAATGCWDKLAK 636
              + N G+ + +    LE    +  Y VL              + +MY+  G    + K
Sbjct: 457 ---YANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGA---ITK 510

Query: 637 VRTCMRDLGVRKI 649
            RT   ++  + I
Sbjct: 511 ARTVFDNMNGKNI 523



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 179/424 (42%), Gaps = 54/424 (12%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+ + A   F R++ +         +F  ++  C   +   QG+Q+HA  I   + KN +
Sbjct: 255 GHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 314

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +  +LV  Y+     N A  +      R    WN +I  Y ++G   EAL ++KQMQ   
Sbjct: 315 VETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG 374

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVAR 229
           I+ D F+  S+L +C  + D   GR +H+ I     E    +   LV MY K G +D A 
Sbjct: 375 IKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAW 434

Query: 230 RLFDKMLERDAVS--WNTMISAYASKGLWKEAFQLFVEMQEEGVEV-------------- 273
           +++D+ +++D  +  WN++++ YA+KGL KE+F  F+EM E  +E               
Sbjct: 435 KVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVL 494

Query: 274 ---------------------------NVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
                                      N+++WN +  G  + G  K  L L   M  +  
Sbjct: 495 ETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGM 554

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRG----CYGEYENVRNALITMYSRCKDLR 362
           Y + V  +  L ACSH G ++ G  I  S           E+      L+    R +D +
Sbjct: 555 YPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAK 614

Query: 363 HAYILFKMTAEKSIITWNSMLSG---YTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
               + KM  E  + TW ++L     +  +D    +A    E+      P YV +++I  
Sbjct: 615 E--FVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGP-YVIMSNIYA 671

Query: 420 LCAR 423
              R
Sbjct: 672 AAGR 675



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 30/266 (11%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ +   G   +A   F ++++     D    S + ++  C  +    +G++LH   +  
Sbjct: 351 IEGYQQNGETQEALRLFKQMQLNGIKPDCF--SLSSMLSSCVSLSDSQKGRELHNFIVRN 408

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENS--NIRYPLPWNLLISLYVRDGFYAEALC 161
            +E+  +L   LV  YA     + A  + + +    R    WN +++ Y   G   E+  
Sbjct: 409 TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFN 468

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGK 221
            + +M    I  D  T  +++                          L +  ALV MY K
Sbjct: 469 HFLEMLESDIEYDVLTMVTIVNL------------------------LVLETALVDMYSK 504

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  AR +FD M  ++ VSWN MIS Y+  G  KEA  L+ EM ++G+  N +T+  I
Sbjct: 505 CGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAI 564

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETY 307
              C  TG  +  L + + M  QE Y
Sbjct: 565 LSACSHTGLVEEGLRIFTSM--QEDY 588


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  322 bits (825), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 185/552 (33%), Positives = 300/552 (54%), Gaps = 39/552 (7%)

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDA 203
           L+I+ Y     +  A  V+ +M +  +  + FT  SVLKAC  M  + +GR+VH   I  
Sbjct: 63  LMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKH 122

Query: 204 CHEWSLFVHNALVSMYGKFG-QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
             +  ++V NAL+ MY      +D A  +F  +  ++ VSW T+                
Sbjct: 123 GLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTL---------------- 166

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
                             IAG   R   + G L +  +M  +E  L+  +  I + AC+ 
Sbjct: 167 ------------------IAGYTHRDDGYGG-LRVFRQMLLEEVELNPFSFSIAVRACTS 207

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +G+   G+++H +  +  +     V N+++ MY RC     A   F    ++ +ITWN++
Sbjct: 208 IGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTL 267

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++GY   +   ES ++F  M   G  PN  T  SI+  CA +A L  G++ H  I+RR +
Sbjct: 268 IAGYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGL 326

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            + +L L N+L++MY++ G + ++  VF  MSRRD V++T+++ GYG  G G  A++LF+
Sbjct: 327 -DGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFD 385

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M ++ I+PD V  +A+LSACSH+GLV EG + F+ M   Y I P  E + C+VDL GRA
Sbjct: 386 KMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRA 445

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G + +A E+I  MP+ P   +W   LGAC+ H    +G+ AA ++L+ RP  +G YV+++
Sbjct: 446 GKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLS 505

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+YAA G W + A++R  M+ +G +K  G +WV+ GN    F+V D    + + IY +L 
Sbjct: 506 NIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLE 565

Query: 683 GLTELMKDAGYV 694
            L   MK++GYV
Sbjct: 566 NLIGHMKESGYV 577



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 193/415 (46%), Gaps = 41/415 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL-YNNACFLVEN 134
           + + ++  C  +K L+ G+ +H  AI  GL+    +   L+  YA+  +  ++AC +   
Sbjct: 95  TISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRG 154

Query: 135 SNIRYPLPWNLLISLYV-RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
            +++  + W  LI+ Y  RD  Y   L V++QM    +  + F++   ++AC  +    F
Sbjct: 155 IHLKNEVSWTTLIAGYTHRDDGYG-GLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTF 213

Query: 194 GRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H+ +     E +L V N+++ MY +      A R F +M +RD ++WNT+I+ Y  
Sbjct: 214 GEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-E 272

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
           +    E+  +F  M+ EG   N  T+ +I                               
Sbjct: 273 RSNPTESLYVFSMMESEGFSPNCFTFTSI------------------------------- 301

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               + AC+ +  L  G++IHG  +R        + NALI MYS+C ++  ++ +F   +
Sbjct: 302 ----MAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMS 357

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            + +++W +M+ GY      EE+  LF +M RSG+ P+ V   +IL  C+    +  G  
Sbjct: 358 RRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLR 417

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIA 486
           +   ++     +    ++  +V++  R+GKV EA  + + M  + DE  +   + 
Sbjct: 418 YFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLG 472



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 105/213 (49%), Gaps = 3/213 (1%)

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           A  L K    K +I    M++GYT  +    +  +F EM    ++PN  TI+S+L  C  
Sbjct: 46  ATTLIKSYFGKGLIGEALMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKG 105

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG-KVPEAKSVFDLMSRRDEVTYT 482
           +  L +G+  H   ++  + +  + + N+L++MYA     + +A  VF  +  ++EV++T
Sbjct: 106 MKCLSYGRLVHGLAIKHGL-DGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWT 164

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           +LIAGY  + +G   L++F +M   +++ +  +    + AC+  G    G+ Q     + 
Sbjct: 165 TLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGE-QLHAAVTK 223

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           +G    L     ++D+Y R    ++A     +M
Sbjct: 224 HGFESNLPVMNSILDMYCRCSCFSEANRYFYEM 256


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  322 bits (825), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 189/587 (32%), Positives = 318/587 (54%), Gaps = 58/587 (9%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W L+I+  ++ G+  EA+ ++ +M       D FT   V+ AC  M  +  G+ +
Sbjct: 234 RNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQL 293

Query: 198 HS-------CIDACHEWSLFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWNTMI 247
           HS        +D C      V   L++MY K    G +  AR++FD++L+ +  SW  MI
Sbjct: 294 HSQAIRHGLTLDRC------VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMI 347

Query: 248 SAYASKGLW-KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           + Y  KG + +EA  LF  M    V  N  T+++                          
Sbjct: 348 TGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSST------------------------- 382

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                     L AC+++ AL++G+++   AV+  +     V N+LI+MY+R   +  A  
Sbjct: 383 ----------LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARK 432

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
            F +  EK++I++N+++  Y     +EE+  LF E+   G+  +  T AS+L   A +  
Sbjct: 433 AFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGT 492

Query: 427 LQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
           +  G++ H  +++  +  N+ +   N+L+ MY+R G +  A  VF+ M  R+ +++TS+I
Sbjct: 493 IGKGEQIHARVIKSGLKLNQSVC--NALISMYSRCGNIESAFQVFEDMEDRNVISWTSII 550

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
            G+   G    AL+LF +M +  ++P+ VT +AVLSACSH GLV EG K F+ M + +G+
Sbjct: 551 TGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGV 610

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
            P++EH+ACMVD+ GR+G L++A + I  MPY   + +W T LGAC++H N  +G+ AA+
Sbjct: 611 IPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAK 670

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
            ++E  P +   Y+L++N+YA+T  WD+++ +R  M++  + K  GC+WV+  N    F 
Sbjct: 671 MIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFY 730

Query: 666 VDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
           V DTS+ +A EIY  L  L+  +K  GYV   +F     EEE  E++
Sbjct: 731 VGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKL 777



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 218/446 (48%), Gaps = 62/446 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL---- 131
           + + +I  C  ++ L  G+QLH+ AI  GL  +  +   L+  YA  S+  + C      
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 132 --VENSNIRYPLPWNLLISLYVRDGFY-AEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             + + N+     W  +I+ YV+ G Y  EAL +++ M    +  ++FT+ S LKAC  +
Sbjct: 333 DQILDHNV---FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANL 389

Query: 189 MDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
             +  G  V +  +         V N+L+SMY + G++D AR+ FD + E++ +S+NT+I
Sbjct: 390 AALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVI 449

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
            AYA     +EA +LF E++++G+  +  T+ ++  G                       
Sbjct: 450 DAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG----------------------- 486

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
                        + +G +  G++IH   ++      ++V NALI+MYSRC ++  A+ +
Sbjct: 487 ------------AASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQV 534

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F+   ++++I+W S+++G+     A ++  LF +M   GV PN VT  ++L  C+ V  +
Sbjct: 535 FEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLV 594

Query: 428 QHG-KEFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVT 480
             G K F      ++M+ EH ++     +  +V++  RSG + EA    + M  + D + 
Sbjct: 595 NEGWKHF------KSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALV 648

Query: 481 YTSLIAGYGIQGE---GRVALKLFEE 503
           + + +    + G    G+ A K+  E
Sbjct: 649 WRTFLGACRVHGNLELGKHAAKMIIE 674



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 194/441 (43%), Gaps = 49/441 (11%)

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           P P    +   + +G   +A+   + M  +    D  TY   LK C      D G +VH 
Sbjct: 31  PNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHE 90

Query: 200 CIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWK 257
            +     +      N+L+S+Y K GQ + A  +F  M   RD +SW+ M+S +A+  +  
Sbjct: 91  KLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGF 150

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
            A   FV+M E G   N                                Y  + AT    
Sbjct: 151 RALLTFVDMIENGYYPN-------------------------------EYCFAAAT---- 175

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCK-DLRHAYILFKMTAEKS 375
            ACS    + +G  I G  V+  Y + +  V   LI M+ + + DL  A+ +F+   E++
Sbjct: 176 RACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERN 235

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
            +TW  M++       A E+  LF EM  SG EP+  T++ ++  CA +  L  G++ H 
Sbjct: 236 AVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHS 295

Query: 436 YILRRAMFNEHLLLWNSLVEMYAR---SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ- 491
             +R  +  +   +   L+ MYA+    G +  A+ +FD +   +  ++T++I GY +Q 
Sbjct: 296 QAIRHGLTLDR-CVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY-VQK 353

Query: 492 -GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G    AL LF  M    + P+H T  + L AC++   +  G++ F     +   F  + 
Sbjct: 354 GGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG--FSSVN 411

Query: 551 HFA-CMVDLYGRAGLLNKAKE 570
             A  ++ +Y R+G ++ A++
Sbjct: 412 CVANSLISMYARSGRIDDARK 432



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 18/232 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A   N  +A E F  I            +FA ++     +  + +G+Q+HA  I  GL+
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAF--TFASLLSGAASIGTIGKGEQIHARVIKSGLK 509

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   L++ Y+      +A  + E+   R  + W  +I+ + + GF  +AL ++ +M
Sbjct: 510 LNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKM 569

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFG-------RVVHSCIDACHEWSLFVHNALVSMY 219
               +R +  TY +VL AC  +  V+ G          H  I     ++      +V + 
Sbjct: 570 LEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYA-----CMVDIL 624

Query: 220 GKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKG---LWKEAFQLFVEMQ 267
           G+ G +  A +  + M  + DA+ W T + A    G   L K A ++ +E +
Sbjct: 625 GRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQE 676


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  322 bits (825), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 187/613 (30%), Positives = 323/613 (52%), Gaps = 39/613 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+  C        G+Q+H   I  G ++N  +   L+  Y     ++ A  + ++   + 
Sbjct: 174 ILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKD 233

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
               N +I  Y R G   +A+ V+K + +      ++T+ +++  C   + V+ G+ +  
Sbjct: 234 IRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQ- 292

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
                          L   YG   +  V                N +I+ Y + G+ KEA
Sbjct: 293 --------------GLAFKYGFLSETSVG---------------NAIITMYGNSGMPKEA 323

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ-ETYLDSVATVIGLG 318
            ++F  M E+    N+I+W  +  G  R+G  K  ++    +  +     DS      L 
Sbjct: 324 ERMFSSMSEK----NLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILD 379

Query: 319 ACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            CS    L+LG +IHG  ++ GC  +  NV  AL+ +Y++C+ L+ A I+F   + K I 
Sbjct: 380 CCSDCNNLELGLQIHGFVMKLGCACDV-NVATALVDLYAKCEKLQSARIVFDHLSNKGIA 438

Query: 378 TWNSMLSGYTHLDCAEESAF-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++N++L+G+      EE    LF ++  +GV+P+ VT + +L L A  A+L+ G+ FH Y
Sbjct: 439 SFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAY 498

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            ++   F+ ++ + NS++ MYA+ G + +A  +F++M+ RD +++ +LI+ Y + G+ + 
Sbjct: 499 TVKTG-FDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDSISWNALISAYALHGQAQK 557

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           +L LFEEM +    PD  T++A+L AC++SGL  +G   F  M   YGI P LEH+ACM 
Sbjct: 558 SLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLEHYACMA 617

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GRAG L++A +II + P+  ++ +W TL+  C++H N   G+ A++ LL+  P  +G
Sbjct: 618 DLLGRAGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLDLSPVEAG 677

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            Y+L++NMYA+    D+ AKVR  M DL  RK  G +W++  N    F+  D  + +++E
Sbjct: 678 SYILVSNMYASEKMSDEAAKVRKVMNDLKFRKEAGSSWIEIDNKVHHFVASDKDHPESRE 737

Query: 677 IYPLLGGLTELMK 689
           IY  L  LT+ MK
Sbjct: 738 IYTRLELLTDEMK 750



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 174/415 (41%), Gaps = 41/415 (9%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           +P ++K      D   G+ VHS  + A  +   F  N ++++Y KF ++D+A+++FD+M 
Sbjct: 70  WPELIKISIGSRDFLLGQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMR 129

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            R                                   N ITW ++  G L   +F+    
Sbjct: 130 TR-----------------------------------NTITWTSLIKGYLEDNDFQSAFS 154

Query: 297 LLSRM-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           +   M +  E + +   TVI L ACS      LG++IH   ++  + E   V  +LI MY
Sbjct: 155 IAGDMHKFGENFNEHTCTVI-LQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMY 213

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++      A  +F     K I   N M+  Y       ++  +F+ +   G EP   T  
Sbjct: 214 TKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFT 273

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           +I+  C     ++ GK+      +    +E   + N+++ MY  SG   EA+ +F  MS 
Sbjct: 274 NIISTCNGDLGVEEGKQLQGLAFKYGFLSE-TSVGNAIITMYGNSGMPKEAERMFSSMSE 332

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHVTMVAVLSACSHSGLVVEGQK 534
           ++ +++T+LI+GY   G G+ A+  F  ++    I  D   + A+L  CS    +  G  
Sbjct: 333 KNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCNNLELGL- 391

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           Q        G    +     +VDLY +   L  A+ +   +     ++  A L G
Sbjct: 392 QIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAILAG 446



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 171/383 (44%), Gaps = 46/383 (12%)

Query: 46  DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           ++   GN  KA E F  +       +    +F +II  C     + +GKQL   A   G 
Sbjct: 243 EYGRAGNGGKAIEVFKNL--LNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGF 300

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
                +   ++T Y +  +   A  +  + + +  + W  LIS Y R G+  +A+  +  
Sbjct: 301 LSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLG 360

Query: 166 MQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID----ACHEWSLFVHNALVSMYG 220
           +     I  D+    ++L  C +  +++ G  +H  +     AC    + V  ALV +Y 
Sbjct: 361 LHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCAC---DVNVATALVDLYA 417

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAY-ASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
           K  ++  AR +FD +  +   S+N +++ +  S G  ++   LF +++  GV+ +++T++
Sbjct: 418 KCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFS 477

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
                            LLS +  Q                    +L+ G+  H   V+ 
Sbjct: 478 ----------------RLLSLLANQ-------------------ASLEKGRSFHAYTVKT 502

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +    +V N++I+MY++C  +  A+ +F +   +  I+WN+++S Y     A++S FLF
Sbjct: 503 GFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDSISWNALISAYALHGQAQKSLFLF 562

Query: 400 REMFRSGVEPNYVTIASILPLCA 422
            EM R G +P+  TI +IL  C 
Sbjct: 563 EEMKRKGFDPDEFTILAILQACT 585


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 181/598 (30%), Positives = 307/598 (51%), Gaps = 75/598 (12%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + WN +IS +   G + ++L  + +M  +  + ++ TY SVL AC  + D  +G+ +
Sbjct: 88  RDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHL 147

Query: 198 HSCIDACHEW-SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H+ I     +  + V N LV MY K G +D ++R+F+ + E                   
Sbjct: 148 HARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREH------------------ 189

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
                            NV+TW ++  G    G+ + V ++  +MR     +D+      
Sbjct: 190 -----------------NVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATI 232

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA---- 372
           LG C     + +G+++HG  V+        V NA ++MY++C D   A + F+  A    
Sbjct: 233 LGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDV 292

Query: 373 ---------------------------EKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
                                      E+++I+WN+ML  Y      EE   L+  M R 
Sbjct: 293 ISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQ 352

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM---FNEHLLLWNSLVEMYARSGK 462
            V P+++T  +++  C+ +A  + G +    IL +A+       + + NS + +Y+R G+
Sbjct: 353 EVRPDWITFVTMIGACSELAISKLGTQ----ILSQAVKVGLGSDVSVVNSAITLYSRCGR 408

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + EA+++FD +  ++ +++ S++ GY   GEG   +++F+ M     KPDH+T +A+LS 
Sbjct: 409 IEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSG 468

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSHSGLV E +  F  MT  +GI   LEHF CMVDL+GRAGLL  A ++I +MP+ P ++
Sbjct: 469 CSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNAS 528

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W  LL AC+IH +T + E A + LLE   EN   Y+L+AN Y++ G  + +++VR  M+
Sbjct: 529 IWGALLSACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMK 588

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA-GYVVKEEF 699
           +  V+K PGC+W++  N    F  +DTS+ Q ++IY  L  + + +KD  GY  +  F
Sbjct: 589 EKRVQKDPGCSWIEVCNRVHVFTANDTSHPQVKDIYKALEDIVKKIKDDYGYFDRSSF 646



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 201/454 (44%), Gaps = 49/454 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A ++  C  +     GK LHA  + +    + ++   LV  YA   L + +  +    
Sbjct: 127 TYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTL 186

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + W  LIS     G   E   ++ QM+   +  DNF   ++L  C    ++  G 
Sbjct: 187 REHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGE 246

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   +      S+ V NA +SMY K G  + A   F+ M   D +SW TMI++++  G
Sbjct: 247 QLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSG 306

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             + A   F  M E     NVI+WN + G   +   ++  L+L   M  QE   D +  V
Sbjct: 307 NVERARDYFNRMPER----NVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFV 362

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             +GACS +   KLG +I   AV+   G   +V N+ IT+YSRC  +  A  LF    EK
Sbjct: 363 TMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEK 422

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++I+WNS++ GY       +   +F+ M  +G +P+++T  +IL  C             
Sbjct: 423 NLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGC------------- 469

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT-----SLIAGYG 489
                                  + SG V EAK  F+ M++   ++ T      ++  +G
Sbjct: 470 -----------------------SHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFG 506

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
             G  ++AL + ++M     KP+     A+LSAC
Sbjct: 507 RAGLLKLALDMIDQM---PFKPNASIWGALLSAC 537



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 34/301 (11%)

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           ACS VG +++  ++HG + +  +G  + ++N++I MY +C  +  A  +F    + S+ +
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 379 WNSMLSGYTHL-------DCAEE-------------SAF-----------LFREMFRSGV 407
           WN M+ GY+ L       D   +             SAF            F EM+  G 
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           +PN +T AS+L  CA + + Q GK  H  I+R   F + +L+ N LV+MYA+ G +  +K
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLD-VLVGNGLVDMYAKCGLIDASK 180

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            VF+ +   + VT+TSLI+G    G       +F +M K+ +  D+  +  +L  C    
Sbjct: 181 RVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGET 240

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            +  G+ Q    T   G+   +      + +Y + G   KA      M      + W T+
Sbjct: 241 NISIGE-QLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVIS-WTTM 298

Query: 588 L 588
           +
Sbjct: 299 I 299



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 34/243 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I  C ++     G Q+ + A+ +GL  +  +V   +T Y+       A  L ++ 
Sbjct: 360 TFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSI 419

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE-------- 187
             +  + WN ++  Y ++G   + + +++ M     + D+ TY ++L  C          
Sbjct: 420 QEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAK 479

Query: 188 ----MMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVS 242
                M  DFG  V          +L     +V ++G+ G + +A  + D+M  + +A  
Sbjct: 480 YHFNSMTKDFGISV----------TLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASI 529

Query: 243 WNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
           W  ++SA   +    + + A +  +E+  E  E  ++  NT +          G LE +S
Sbjct: 530 WGALLSACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSS--------FGRLECVS 581

Query: 300 RMR 302
            +R
Sbjct: 582 EVR 584


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 190/553 (34%), Positives = 286/553 (51%), Gaps = 36/553 (6%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           +N+LI  ++R G   +AL ++ +M     +  D  T  + +K+C  M D+  GR V +  
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQA-- 195

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                            Y            F +    D    N++I  YAS G    A  
Sbjct: 196 -----------------YA-----------FKRGFMVDQFVLNSLIHMYASCGDVVAAHV 227

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF  +Q +GV    I WN +  G ++ G++K V+E+   M       D V  +    AC 
Sbjct: 228 LFHTVQVKGV----IAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACG 283

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            +G   LG+ I   A         N+  AL+ MY++C +L  A  LF     + ++ W++
Sbjct: 284 RLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSA 343

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+SGYT  D   E+  +F EM  + V PN VT+ S+L  CA +  L+ GK  H YI RR 
Sbjct: 344 MISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYI-RRK 402

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
                ++L  +LV+ YA+ G + +A   F+ M  R+  T+T+LI G    G  R AL+LF
Sbjct: 403 DLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELF 462

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M +  I+P  VT + VL ACSH  LV EG++ F  MT  YGI P++EH+ CMVDL GR
Sbjct: 463 SSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGR 522

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AGL+++A + I  MP  P + +W  LL AC +H+N  IGE A ++++   P +SG Y+L+
Sbjct: 523 AGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILL 582

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N YA+ G W   A VR  M++ GV KIPGC+ ++       F  +D+ + Q  EIY  +
Sbjct: 583 SNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKV 642

Query: 682 GGLTELMKDAGYV 694
             + E +K  GY+
Sbjct: 643 HEMIENIKMVGYI 655



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 186/425 (43%), Gaps = 39/425 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTR-IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           ++ F   G+   A   F   +  TA S D    + A+ +  C ++  L+ G+ + A A  
Sbjct: 142 IRSFLRAGHPEDALHLFVEMLDDTAVSPD--QHTVANTVKSCSRMCDLSVGRGVQAYAFK 199

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            G   +  ++  L+  YAS      A  L     ++  + WN +I+ YV++G + E + +
Sbjct: 200 RGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEM 259

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR-VVHSCIDACHEWSLFVHNALVSMYGK 221
           +K M   R   D  T  SV  ACG + D + G+ +     +     S  +  ALV MY K
Sbjct: 260 FKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAK 319

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G++D ARRLFD+M  RD V+W+ MIS Y      +EA  +F EMQ  G EVN       
Sbjct: 320 CGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQ--GTEVNP------ 371

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                      + V  V  L AC+ +GAL+ GK +H    R   
Sbjct: 372 ---------------------------NDVTMVSVLSACAVLGALETGKWVHSYIRRKDL 404

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                +  AL+  Y++C  ++ A   F+    ++  TW +++ G      + E+  LF  
Sbjct: 405 PLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSS 464

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  + +EP  VT   +L  C+    ++ G+     + +       +  +  +V++  R+G
Sbjct: 465 MLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAG 524

Query: 462 KVPEA 466
            + EA
Sbjct: 525 LIDEA 529


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 197/640 (30%), Positives = 329/640 (51%), Gaps = 41/640 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS-LYN-NACFLVE 133
           +F  ++  C  ++AL  G+ +H  A  LGL  +  +   L+  YA    LY     F   
Sbjct: 109 TFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSI 168

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           +   R  + WN +I+ +     +A+ +    QMQ   +  ++ T  S+L   G+   +  
Sbjct: 169 SHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQ 228

Query: 194 GRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G+ +H+  I      ++ +  AL+ MY K   +  AR++F+ + +++ V W+ MI  Y  
Sbjct: 229 GKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVL 288

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                +A  L+ +M                  C+   N                   ++A
Sbjct: 289 HDSISDALALYDDML-----------------CIYGLNPTPA---------------TLA 316

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
           T+  L AC+ +  LK GK++H   ++        V N+LI+MY++C  + +A        
Sbjct: 317 TM--LRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMI 374

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            K  +++++++SG      AE++  +FR+M  SG+ P   T+ ++LP C+ +A LQHG  
Sbjct: 375 AKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTC 434

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H Y + R   N+   + N++++MY++ GK+  ++ +FD M  RD +++ ++I GYGI G
Sbjct: 435 CHGYTVVRGFTND-TSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHG 493

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               AL LF+E+    +KPD VT++AVLSACSHSGLV EG+  F  M+  + I P++ H+
Sbjct: 494 LCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHY 553

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CMVDL  RAG L++A   I +MP+ P   +W  LL AC+ H+N  +GE  ++K+    P
Sbjct: 554 ICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGP 613

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           E +G +VL++N+Y++ G WD  A +R+  R  G +K PGC+WV+   V   F+    S+ 
Sbjct: 614 EGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHP 673

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
           Q+  I   L  L   MK  GY     F     EEE  E+I
Sbjct: 674 QSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQI 713



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 229/486 (47%), Gaps = 46/486 (9%)

Query: 117 TFYASFSLYNNACFLVENSNIRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
           T  A + +  N   L  +   + P P    WN++I  Y   G + +++ +Y  M    + 
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT 104

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRL 231
             NFT+P +LKAC  +  +  GR++H+          L+V  AL+ MY K G +  A+ L
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTL 164

Query: 232 FDKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           F+ +   +RD V+WN MI+A++   L  +      +MQ+ GV  N  T            
Sbjct: 165 FNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSST------------ 212

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                             L S+   IG        AL  GK IH   +R  + +   ++ 
Sbjct: 213 ------------------LVSILPTIG-----QANALHQGKAIHAYYIRNFFFDNVVLQT 249

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF-RSGVE 408
           AL+ MY++C  L +A  +F    +K+ + W++M+ GY   D   ++  L+ +M    G+ 
Sbjct: 250 ALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLN 309

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P   T+A++L  CA++ +L+ GK+ HC++++  M +    + NSL+ MYA+ G +  A  
Sbjct: 310 PTPATLATMLRACAQLTDLKRGKKLHCHMIKSGM-DLDTTVGNSLISMYAKCGIMDNAVG 368

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
             D M  +D V+Y+++I+G    G    AL +F +M  + I P   TM+A+L ACSH   
Sbjct: 369 FLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAA 428

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           +  G       T + G          ++D+Y + G +  ++EI  +M      + W T++
Sbjct: 429 LQHG-TCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIIS-WNTMI 486

Query: 589 GACQIH 594
               IH
Sbjct: 487 IGYGIH 492



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 50/114 (43%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
           L++   ++  C  + AL  G   H   +  G   +  +   ++  Y+       +  + +
Sbjct: 413 LETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFD 472

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
               R  + WN +I  Y   G   EAL +++++Q+  ++ D+ T  +VL AC  
Sbjct: 473 RMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSH 526


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 193/621 (31%), Positives = 333/621 (53%), Gaps = 47/621 (7%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q+H   + +G +   ++   L+  Y        AC L ++   +  + +N L++ Y ++G
Sbjct: 160 QVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEG 219

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHN 213
           F  +A+ ++ +MQ    R   FT+ +VL A  +M D++FG+ VHS +  C+  W++FV N
Sbjct: 220 FNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVAN 279

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           AL+  Y K  ++  AR+L                               F EM E    V
Sbjct: 280 ALLDFYSKHDRIVEARKL-------------------------------FYEMPE----V 304

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD----SVATVIGLGACSHVGALKLG 329
           + I++N +   C   G  +  LEL   +  Q T  D      AT++ + A S    L++G
Sbjct: 305 DGISYNVLITCCAWNGRVEESLELFREL--QFTRFDRRQFPFATLLSIAANS--LNLEMG 360

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           ++IH  A+         V N+L+ MY++C     A  +F   A +S + W +++SGY   
Sbjct: 361 RQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQK 420

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              E+   LF EM R+ +  +  T ASIL  CA +A+L  GK+ H  I+R    + ++  
Sbjct: 421 GLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLS-NVFS 479

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            ++LV+MYA+ G + EA  +F  M  R+ V++ +LI+ Y   G+G  AL+ FE+M  + +
Sbjct: 480 GSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGL 539

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +P+ V+ +++L ACSH GLV EG + F  MT +Y + P+ EH+A MVD+  R+G  ++A+
Sbjct: 540 QPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAE 599

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP-ENSGYYVLIANMYAAT 628
           +++ +MP+ P   MW+++L +C+IH+N  +   AA++L   +   ++  YV ++N+YAA 
Sbjct: 600 KLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAA 659

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           G WD + KV+  +R+ G+RK+P  +WV+       F  +DTS+ Q +EI   L  L + M
Sbjct: 660 GEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQM 719

Query: 689 KDAGYVVKEEFCSEEEIVEEI 709
           ++ GY   +  C+   + EE+
Sbjct: 720 EEQGY-KPDSTCALHNVDEEV 739



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 120/485 (24%), Positives = 220/485 (45%), Gaps = 39/485 (8%)

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN +    ++  Y      + A  L ++   R  + W +LI  Y +   + EA  ++  M
Sbjct: 71  KNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADM 130

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
               +  D+ T  ++L    E   V+    VH   +   ++ +L V N+L+  Y K   +
Sbjct: 131 CRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSL 190

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            +A  LF  M E+D V++N +++ Y+ +G   +A  LF +MQ+ G   +  T+  +    
Sbjct: 191 GLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAV---- 246

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          L A   +  ++ G+++H   V+  +    
Sbjct: 247 -------------------------------LTAGIQMDDIEFGQQVHSFVVKCNFVWNV 275

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NAL+  YS+   +  A  LF    E   I++N +++        EES  LFRE+  +
Sbjct: 276 FVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFT 335

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
             +      A++L + A   NL+ G++ H   +     +E +L+ NSLV+MYA+  K  E
Sbjct: 336 RFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISE-VLVGNSLVDMYAKCDKFGE 394

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A  +F  ++ +  V +T+LI+GY  +G     LKLF EM++ +I  D  T  ++L AC++
Sbjct: 395 ANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACAN 454

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
              +  G++   R+    G    +   + +VD+Y + G + +A ++  +MP    S  W 
Sbjct: 455 LASLTLGKQLHSRIIR-SGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMP-VRNSVSWN 512

Query: 586 TLLGA 590
            L+ A
Sbjct: 513 ALISA 517



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 175/378 (46%), Gaps = 7/378 (1%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N  V  + + G +  AR+LFD+M  ++ +S NTMI  Y   G    A  LF  M    V+
Sbjct: 46  NFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSM----VQ 101

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            +V+TW  + GG  +   F     L + M       D +     L   +   ++    ++
Sbjct: 102 RSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQV 161

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           HG  V+  Y     V N+L+  Y + + L  A  LFK  AEK  +T+N++L+GY+     
Sbjct: 162 HGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFN 221

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
            ++  LF +M   G  P+  T A++L    ++ +++ G++ H +++ +  F  ++ + N+
Sbjct: 222 HDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVV-KCNFVWNVFVANA 280

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L++ Y++  ++ EA+ +F  M   D ++Y  LI      G    +L+LF E+   +    
Sbjct: 281 LLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRR 340

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
                 +LS  ++S L +E  +Q      +     ++     +VD+Y +     +A  I 
Sbjct: 341 QFPFATLLSIAANS-LNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIF 399

Query: 573 TKMPYTPTSAMWATLLGA 590
             + +  +S  W  L+  
Sbjct: 400 ADLAHQ-SSVPWTALISG 416


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 180/535 (33%), Positives = 296/535 (55%), Gaps = 20/535 (3%)

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF--TYPSVLKACGEMMDVDFGRVV 197
           PL W   I +    G + +A+ ++ +M++      +   + P+ LK+C  +     G  +
Sbjct: 14  PLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASL 73

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H+  I +      F  NAL+++Y K         L    L    V   T +    S    
Sbjct: 74  HALAIRSGAFADRFTANALLNLYCK---------LPCSYLHSTGV---TSVGGTGSSTAL 121

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           +   ++F EM    +E +V++WNT+  GC   G     L L+ +M  +    DS      
Sbjct: 122 ESVRKVFDEM----IERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSV 177

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L   +    +K G E+HG AVR  +     V ++LI MY+ C    ++  +F     +  
Sbjct: 178 LPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDP 237

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           I WNS+L+G       EE+  +FR M ++GV P  VT +S++P+C  +A+L+ GK+ H Y
Sbjct: 238 ILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAY 297

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           ++R   F +++ + +SL++MY + G++  A  +FD M   D V++T++I GY + G  R 
Sbjct: 298 VIRGG-FEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPARE 356

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           AL LFE M     KP+H+T +AVL+ACSH+GLV +G K F+ M+  YGI P LEH A + 
Sbjct: 357 ALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALA 416

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           D+ GRAG L++A   I+KM   PT+++W+TLL AC++H+NT + E  A+K++E  P + G
Sbjct: 417 DILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIG 476

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
            +V+++NMY+A+G W++ A +R  MR  G++K P C+W++  N    F+  D S+
Sbjct: 477 SHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEVKNKLHVFVAHDRSH 531



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
            L S   I   C  VK   +G ++H  A+  G + +  +   L+  YA+ +  + +  + 
Sbjct: 173 TLSSVLPIFAECADVK---RGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVF 229

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           +N  +R P+ WN +++   ++G   EAL ++++M    +R    T+ S++  CG +  + 
Sbjct: 230 DNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLR 289

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
           FG+ +H+  I    E ++F+ ++L+ MY K G++ +A  +FD+M   D VSW  MI  YA
Sbjct: 290 FGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYA 349

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
             G  +EA  LF  M+    + N IT+  +   C   G
Sbjct: 350 LHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAG 387


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  321 bits (823), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 203/628 (32%), Positives = 330/628 (52%), Gaps = 61/628 (9%)

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +VPK+ +    FS          NSN+      N LI+   ++G   EA  V+++M  R 
Sbjct: 49  VVPKISSPVRDFS---------ANSNVARS---NWLITQLGKEGKIGEARQVFEEMPDR- 95

Query: 171 IRGDNFTYPSVLKA---CGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDV 227
              D  ++ +V+     CG + +       +  I     W+     ALVS Y ++ +++ 
Sbjct: 96  ---DVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWT-----ALVSGYVRWNRIEE 147

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           ARRLFD M  ++ +SWNTMI  YA KG   +A  LF +M E     NV++WNT+    ++
Sbjct: 148 ARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPER----NVVSWNTVITAFMQ 203

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY------ 341
                   EL +RM  ++  +     V GL     +   +L        VR         
Sbjct: 204 RRRVDEAQELFNRMPERDV-ISWTTMVAGLSKNGRIDDARL--LFDKMPVRNVVSWNTMI 260

Query: 342 -GEYENVR-------------------NALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            G  +N+R                   N +IT + +   L  A   F   + K+++TW +
Sbjct: 261 IGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTA 320

Query: 382 MLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           ++SG+     +EE+  +F EM   + V+PN  T  S+L  C+++A L  G++ H  I+ +
Sbjct: 321 VISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIH-QIISK 379

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFD--LMSRRDEVTYTSLIAGYGIQGEGRVAL 498
            ++ E   + ++L+ MY++ G++  A+ +FD   +  RD V++  +IA Y   G G  A+
Sbjct: 380 TVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAI 439

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LF+EM     +PD+VT +A+LSACSH+GLV EG K FE +     I  + +HF C+VDL
Sbjct: 440 SLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDL 499

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
           +GRAG L +A + I  +   P++++WA LL  C +H +  +G+  AEKLLET PEN+G Y
Sbjct: 500 FGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTY 559

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           ++++N+YA+TG W + A VR  M+D G++K PGC+W++ GN    F+V D S+ + + IY
Sbjct: 560 LVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFENIY 619

Query: 679 PLLGGLTELMKDAGYVVKEEFCSEEEIV 706
            LL  L   MK  G+ + E+   +  +V
Sbjct: 620 LLLHDLHTKMKKIGHTLYEDLTIDFNLV 647



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/495 (26%), Positives = 220/495 (44%), Gaps = 55/495 (11%)

Query: 32  NEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALA 91
           N ++ R N L T       G + +A + F  +       DVV  S+  +I    K   + 
Sbjct: 63  NSNVARSNWLIT--QLGKEGKIGEARQVFEEM----PDRDVV--SWTAVITGYIKCGMIE 114

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           + K L     A+   KN V    LV+ Y  ++    A  L +   ++  + WN +I  Y 
Sbjct: 115 EAKTLFDRNDAI---KNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYA 171

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV 211
           R G+  +AL ++++M  R +     ++ +V+ A  +   VD  +      +   E  +  
Sbjct: 172 RKGWIDQALDLFEKMPERNV----VSWNTVITAFMQRRRVDEAQ---ELFNRMPERDVIS 224

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
              +V+   K G++D AR LFDKM  R+ VSWNTMI  YA      EAF+LF +M E  +
Sbjct: 225 WTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPEREL 284

Query: 272 EV---------------------------NVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
                                        NV+TW  +  G ++ G  +  L++ S M+  
Sbjct: 285 SSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAA 344

Query: 305 ETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
                +  T +  LGACS + AL  G++IH    +  Y E  +V +ALI MYS+C +L  
Sbjct: 345 NNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELEL 404

Query: 364 AYILFK--MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
           A  +F       + +++WN M++ Y H     ++  LF EM   G  P+ VT  ++L  C
Sbjct: 405 ARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSAC 464

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS----RRD 477
           +    +  G +    ++R          +  LV+++ R+G++ EA   FD +     +  
Sbjct: 465 SHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEA---FDFIKGLEVKPS 521

Query: 478 EVTYTSLIAGYGIQG 492
              + +L+AG  + G
Sbjct: 522 ASVWAALLAGCNVHG 536


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  321 bits (823), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 305/573 (53%), Gaps = 42/573 (7%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN  +    R   + EAL +Y QM +     + FT+P   K+C  +     G  +H   I
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD--AVSWNTMISAYASKGLWKEA 259
               E   FV  +L+SMY K   +  AR++FD+       AV +N +I+ Y+    + +A
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             LF                                    +MR +   +++V  +  +  
Sbjct: 144 VLLF-----------------------------------RQMRKEGVSVNAVTMLGLIPV 168

Query: 320 CSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           C+    L  G  +H  +VR G  G+  +V N L+TMY RC  +  A  LF    EK +IT
Sbjct: 169 CAGPIHLGFGTSLHACSVRFGLDGDL-SVGNCLLTMYVRCGSVDFARKLFDGMPEKGLIT 227

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M+SGY     A     L+R+M  +G+ P+ VT+  +L  CA +     G+E    I 
Sbjct: 228 WNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRI- 286

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
             + F  +  L N+L+ MYAR G + +A+++FD M+ ++ +++T++IAGYG+ G+G +A+
Sbjct: 287 ELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAV 346

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LF+EM  +   PD    V+VLSACSH+GL  +G   F  M   YG+ P  EH++C+VDL
Sbjct: 347 QLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDL 406

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L +A+++I  M   P  A+W  LLGAC+IHRN  + E A EK++E  P N GYY
Sbjct: 407 LGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYY 466

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+++  G  + + +VR  MR+  ++K PGC++V+       FL  D ++ QAQEIY
Sbjct: 467 VLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIY 526

Query: 679 PLLGGLTELMK-DAGYVVKEEFCSEEEIVEEIG 710
            +L GL +++K   G    ++    EE++  +G
Sbjct: 527 HMLDGLEDIIKRRGGSNDNDQESRNEELITGMG 559



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/482 (24%), Positives = 212/482 (43%), Gaps = 43/482 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L++ A + +  +A   + ++  +  S +     FA     C  +     G QLH   I  
Sbjct: 28  LRELARQRHFQEALNLYCQMLASGDSPNAFTFPFA--FKSCASLSLPLAGSQLHGHVIKT 85

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNA-CFLVENSNIR-YPLPWNLLISLYVRDGFYAEALC 161
           G E  P +   L++ Y   S   +A     EN + R   + +N LI+ Y  +  +++A+ 
Sbjct: 86  GCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVL 145

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYG 220
           +++QM+   +  +  T   ++  C   + + FG  +H+C +    +  L V N L++MY 
Sbjct: 146 LFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYV 205

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           + G VD AR+LFD M E               KGL                    ITWN 
Sbjct: 206 RCGSVDFARKLFDGMPE---------------KGL--------------------ITWNA 230

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +  G  + G    VL+L  +M       D V  V  L +C+H+GA   G+E+        
Sbjct: 231 MISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSG 290

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +G    ++NALI MY+RC +L  A  +F    EK++I+W ++++GY      E +  LF 
Sbjct: 291 FGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFD 350

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           EM  S   P+     S+L  C+     + G  +   + R          ++ +V++  R+
Sbjct: 351 EMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRA 410

Query: 461 GKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
           G++ EA+ +   MS   D   + +L+    I     +A   FE++   + +P ++    +
Sbjct: 411 GRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKV--IEFEPTNIGYYVL 468

Query: 520 LS 521
           LS
Sbjct: 469 LS 470



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 182/383 (47%), Gaps = 17/383 (4%)

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           +WN       R  +F+  L L  +M       ++        +C+ +     G ++HG  
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 337 VR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMT--AEKSIITWNSMLSGYTHLDCAE 393
           ++ GC  E   V+ +LI+MY +C  +  A  +F     +    + +N++++GY+      
Sbjct: 83  IKTGCEPE-PFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFS 141

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           ++  LFR+M + GV  N VT+  ++P+CA   +L  G   H   +R  + +  L + N L
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGL-DGDLSVGNCL 200

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MY R G V  A+ +FD M  +  +T+ ++I+GY   G     L L+ +M    I PD 
Sbjct: 201 LTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDP 260

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMT-SIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
           VT+V VLS+C+H G    G++  +R+  S +G  P L++   ++++Y R G L KA+ I 
Sbjct: 261 VTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIF 318

Query: 573 TKMPYTPTSAMWATLLGACQIHRNTGIGEWAA----EKLLETRPENSGYYVLIANMYAAT 628
             M      + W  ++    +H   G GE A     E +      +   +V + +  +  
Sbjct: 319 DGMTEKNVIS-WTAIIAGYGMH---GQGELAVQLFDEMISSDELPDGAAFVSVLSACSHA 374

Query: 629 GCWDKLAKVRTCM-RDLGVRKIP 650
           G  +K     T M RD G++  P
Sbjct: 375 GLTEKGLYYFTAMERDYGLQPGP 397



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 6/207 (2%)

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           + +  +WN+ L         +E+  L+ +M  SG  PN  T       CA ++    G +
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD--LMSRRDEVTYTSLIAGYGI 490
            H ++++     E  +   SL+ MY +   +  A+ VFD    SR   V Y +LIAGY +
Sbjct: 78  LHGHVIKTGCEPEPFV-QTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI-YGIFPQL 549
                 A+ LF +M K  +  + VTM+ ++  C  +G +  G        S+ +G+   L
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHACSVRFGLDGDL 194

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMP 576
               C++ +Y R G ++ A+++   MP
Sbjct: 195 SVGNCLLTMYVRCGSVDFARKLFDGMP 221


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  321 bits (823), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 213/705 (30%), Positives = 356/705 (50%), Gaps = 62/705 (8%)

Query: 6   SRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRI 65
           +R++ +G+    +EK     W   I+  H+     LE L  F     +  A   +T +  
Sbjct: 199 ARVLFDGI---MMEKEDTVSWNSIIS-AHVTEGKCLEALSLFRRMQEVGVASNTYTFV-- 252

Query: 66  TAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125
            AA   V   SF  +            G  +H  A+      +  +   L+  YA     
Sbjct: 253 -AALQGVEDPSFVKL------------GMGIHGAALKSNHFADVYVANALIAMYAKCGRM 299

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
            +A  +  +   R  + WN L+S  V++  Y +AL  ++ MQ+   + D  +  +++ A 
Sbjct: 300 EDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAAS 359

Query: 186 GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
           G   ++  G+ VH+  I    + ++ + N L+ MY K   V      F+ M E+D +SW 
Sbjct: 360 GRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWT 419

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           T+I+ YA      EA  LF ++Q +G++V+ +    + G  LR                 
Sbjct: 420 TIIAGYAQNECHLEAINLFRKVQVKGMDVDPM----MIGSVLR----------------- 458

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                         ACS + +    +EIHG   +    +   ++NA++ +Y       +A
Sbjct: 459 --------------ACSGLKSRNFIREIHGYVFKRDLADIM-LQNAIVNVYGEVGHRDYA 503

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
              F+    K I++W SM++   H     E+  LF  + ++ ++P+ + I S L   A +
Sbjct: 504 RRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANL 563

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
           ++L+ GKE H +++R+  F E  +  +SLV+MYA  G V  ++ +F  + +RD + +TS+
Sbjct: 564 SSLKKGKEIHGFLIRKGFFLEGPIA-SSLVDMYACCGTVENSRKMFHSVKQRDLILWTSM 622

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           I   G+ G G  A+ LF++M    + PDH+T +A+L ACSHSGL+VEG++ FE M   Y 
Sbjct: 623 INANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQ 682

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           + P  EH+ACMVDL  R+  L +A + +  MP  P+S +W  LLGAC IH N  +GE AA
Sbjct: 683 LEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAA 742

Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
           ++LL++  +NSG Y LI+N++AA G W+ + +VR  M+  G++K PGC+W++  N    F
Sbjct: 743 KELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTF 802

Query: 665 LVDDTSNVQAQEIYPLLGGLTELM-KDAGYVVKEEF----CSEEE 704
           +  D S+ Q  +IY  L   T+L+ K  GY+ + +F     SEEE
Sbjct: 803 MARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEE 847



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 180/655 (27%), Positives = 305/655 (46%), Gaps = 89/655 (13%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDS---FAH--IIFCCGKVKALAQGKQLHACAIALG 104
           +G L+ AF++ T +    ++H +   S    AH  ++  C  VKAL QG+QLHA  +   
Sbjct: 21  KGTLNPAFQSLTLL----STHPLATPSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSH 76

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           L  +  L  KL+  Y       +A  + +    R    WN ++  +V  G Y EA+ +YK
Sbjct: 77  L--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYK 134

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFG 223
           +M+   +  D  T+PSVLKACG + +   G  +H     C     +FV NAL++MYGK G
Sbjct: 135 EMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCG 194

Query: 224 QVDVARRLFDK-MLER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT- 280
            +  AR LFD  M+E+ D VSWN++ISA+ ++G   EA  LF  MQE GV  N  T+   
Sbjct: 195 DLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAA 254

Query: 281 ---------------IAGGCLRTGNFKGVL------------------------------ 295
                          I G  L++ +F  V                               
Sbjct: 255 LQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDY 314

Query: 296 ----ELLSRMRTQETYLDSV---------------ATVIGLGACS-HVGALKLGKEIHGS 335
                LLS +   E Y D++                +V+ L A S   G L  GKE+H  
Sbjct: 315 VSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAY 374

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           A+R        + N LI MY++C  ++H    F+   EK +I+W ++++GY   +C  E+
Sbjct: 375 AIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEA 434

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             LFR++   G++ + + I S+L  C+ + +    +E H Y+ +R + +  ++L N++V 
Sbjct: 435 INLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLAD--IMLQNAIVN 492

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           +Y   G    A+  F+ +  +D V++TS+I      G    AL+LF  + +  I+PD + 
Sbjct: 493 VYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIA 552

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           +++ LSA ++   + +G K+        G F +    + +VD+Y   G +  ++++   +
Sbjct: 553 IISALSATANLSSLKKG-KEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSV 611

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN--SGYYVLIANMYAAT 628
                  +W +++ A  +H   G G  A     +   EN    +   +A +YA +
Sbjct: 612 KQRDL-ILWTSMINANGMH---GCGNEAIALFKKMTDENVIPDHITFLALLYACS 662


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  321 bits (823), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 203/664 (30%), Positives = 313/664 (47%), Gaps = 106/664 (15%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           +L   +  H C +   +     L+  LV+ YA       A  + +   +R    +N L+S
Sbjct: 32  SLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLS 91

Query: 149 LYVRDGFYAEALCVYKQMQ--------------SRRIRG--------------DNF---- 176
            Y R G   EA  +++ +               +R  RG              D+F    
Sbjct: 92  AYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNA 151

Query: 177 -TYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            ++ S L AC    D+  G  VH  +  + H   + +  ALV MY K  +   ARR+FD 
Sbjct: 152 YSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDA 211

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M ER                                   NV++WN++     + G     
Sbjct: 212 MPER-----------------------------------NVVSWNSLITCYEQNGPVGEA 236

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV-RGCYGEYENVRNALIT 353
           L L   M     + D V     + AC+ + A + G+++H   V R    +   + NAL+ 
Sbjct: 237 LVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVD 296

Query: 354 MYSRC-------------------------------KDLRHAYILFKMTAEKSIITWNSM 382
           MY++C                                ++  A ++F    EK++I WN +
Sbjct: 297 MYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVL 356

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++ Y      EE+  LF ++ R  + P + T  ++L  C  +A LQ G++ H ++L+   
Sbjct: 357 IAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGF 416

Query: 443 -FN----EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
            F+      + + NSLV+MY ++G + +   VF+ M+ RD V++ ++I GY   G  + A
Sbjct: 417 RFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDA 476

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L LFE M  +   PD VTM+ VLSAC HSGLV EG++ F  MT  +GI P  +H+ CMVD
Sbjct: 477 LHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVD 536

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L GRAG L +A+E+I  MP  P S +WA+LLGAC++H+N  +GE  A +L E  PENSG 
Sbjct: 537 LLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGP 596

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           YVL++NMYA  G W  + +VR  M+D GV K PGC+W++ G+  + FL  D  +    EI
Sbjct: 597 YVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEI 656

Query: 678 YPLL 681
           +  L
Sbjct: 657 HSTL 660



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 213/473 (45%), Gaps = 31/473 (6%)

Query: 49  GRGNLSKAFEAFTRIRITAASH--DVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALG 104
           GRG+   A      +R  AA H  D VL+  SFA  +  C   K L  G+Q+H       
Sbjct: 128 GRGHAGDA------LRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSP 181

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   LV  YA      +A  + +    R  + WN LI+ Y ++G   EAL ++ 
Sbjct: 182 HADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFV 241

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGK 221
           +M +     D  T  SV+ AC  +     GR VH+ +   D   +  + ++NALV MY K
Sbjct: 242 EMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRD-DMVLNNALVDMYAK 300

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G+   AR +FD M  R  VS  ++++ YA     ++A  +F +M    VE NVI WN +
Sbjct: 301 CGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQM----VEKNVIAWNVL 356

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH----GSAV 337
                + G  +  + L  +++    +         L AC ++  L+LG++ H        
Sbjct: 357 IAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGF 416

Query: 338 RGCYGEYENV--RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           R  +G   +V   N+L+ MY +   +     +F+  A +  ++WN+M+ GY     A+++
Sbjct: 417 RFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDA 476

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             LF  M  S   P+ VT+  +L  C     +  G+    ++            +  +V+
Sbjct: 477 LHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVD 536

Query: 456 MYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGYGIQ-----GEGRVALKLFE 502
           +  R+G + EA+ +  D+ +  D V + SL+    +      GE R A +LFE
Sbjct: 537 LLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGE-RTAGRLFE 588


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 208/622 (33%), Positives = 328/622 (52%), Gaps = 50/622 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           + L +G+++HA  +  G     + V   LV  YA     + AC + +    R  + WN +
Sbjct: 396 QGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTI 455

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE 206
           I+   ++G+   A+  Y  M+   I   NF   S L +C  +  +  G+ +H   DA  +
Sbjct: 456 ITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLH--CDAV-K 512

Query: 207 WSLF----VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS-KGLWKEAFQ 261
           W L+    V NALV MYG+ G++     +F+ M   D VSWN+++   AS +    E+ Q
Sbjct: 513 WGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQ 572

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F  M + G+  N +T+           NF   L  LS                      
Sbjct: 573 VFSNMMKSGLVPNKVTFV----------NFLAALTPLS---------------------- 600

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWN 380
               L+LGK+IH   ++    E   V NAL++ Y++  D+     LF +M+  +  I+WN
Sbjct: 601 ---VLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWN 657

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           SM+SGY +    +E+      M  S    ++ T + +L  CA VA L+ G E H + LR 
Sbjct: 658 SMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRS 717

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            + ++ +++ ++LV+MY++ G++  A  VF  MS+++E ++ S+I+GY   G GR AL++
Sbjct: 718 HLESD-VVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEI 776

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           FEEM ++   PDHVT V+VLSACSH+GLV  G   FE M   YGI P++EH++C++DL G
Sbjct: 777 FEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMED-YGILPRIEHYSCVIDLLG 835

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQ--IHR-NTGIGEWAAEKLLETRPENSGY 617
           RAG L+K +E + +MP  P + +W T+L ACQ   HR    +G  A+  LLE  P+N   
Sbjct: 836 RAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVN 895

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           YVL +  +AA G W+  AK R  M+   V+K  G +WV   +    F+  D S+   +EI
Sbjct: 896 YVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEI 955

Query: 678 YPLLGGLTELMKDAGYVVKEEF 699
           Y  L  L + +++AGYV   E+
Sbjct: 956 YEKLNFLIQKIRNAGYVPLTEY 977



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 227/512 (44%), Gaps = 48/512 (9%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           A  + LH   +  GL  +  L   LV  YA  +  + A  + +    R  + W  LIS +
Sbjct: 82  ASPESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGH 141

Query: 151 VRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMD--VDFGRVVHSCIDACHE 206
           V  G   +A  +++ M  +    R  +FT+ SVL+AC +     + F   VH  +     
Sbjct: 142 VLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEF 201

Query: 207 WS-LFVHNALVSMYGK--FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
            S   V NAL+SMYG    G   +A+R+FD    RD ++WN ++S YA +G     F LF
Sbjct: 202 TSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLF 261

Query: 264 VEMQ--EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
             MQ  + G+E                            +R  E    S+ T   L +CS
Sbjct: 262 RAMQYDDSGIE----------------------------LRPTEHTFGSLITATYLSSCS 293

Query: 322 HVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
               L L  ++    ++ GC  +   V +AL++ ++R   L  A  ++    E++ +T N
Sbjct: 294 ----LGLLDQLFVRVLKSGCSSDLY-VGSALVSAFARHGMLDEAKDIYLGLKERNAVTLN 348

Query: 381 SMLSGYTHLDCAEESAFLF---REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            +++G       E +A +F   R+     V+   V +++I         L+ G+E H ++
Sbjct: 349 GLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHV 408

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           LR       + + N LV MYA+ G + +A  VF LM  RD +++ ++I      G    A
Sbjct: 409 LRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAA 468

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           +  +  M +N I P +   ++ LS+C+  GL+  GQ Q       +G++        +V 
Sbjct: 469 MMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQ-QLHCDAVKWGLYLDTSVSNALVK 527

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           +YG  G +++  EI   M      + W +++G
Sbjct: 528 MYGECGRMSECWEIFNSMSAHDVVS-WNSIMG 558



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 4/217 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN- 134
           +F + +     +  L  GKQ+H+  +  G+ ++  +   L++ YA     ++   L    
Sbjct: 588 TFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRM 647

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEAL-CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           S  R  + WN +IS Y+ +G   EA+ CV   M S ++  D+ T+  VL AC  +  ++ 
Sbjct: 648 SGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMM-DHCTFSIVLNACASVAALER 706

Query: 194 GRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H+     H E  + V +ALV MY K G++D A ++F  M +++  SWN+MIS YA 
Sbjct: 707 GMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYAR 766

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            GL ++A ++F EMQE G   + +T+ ++   C   G
Sbjct: 767 HGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAG 803



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 38/217 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ ++  C  V AL +G ++HA  +   LE + V+   LV  Y+     + A  +  + 
Sbjct: 690 TFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSM 749

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG--------- 186
           + +    WN +IS Y R G   +AL ++++MQ      D+ T+ SVL AC          
Sbjct: 750 SQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGL 809

Query: 187 ---EMMDVDFG---RVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LER 238
              E+M+ D+G   R+ H SC+              + + G+ G++D  +    +M ++ 
Sbjct: 810 DYFELME-DYGILPRIEHYSCV--------------IDLLGRAGELDKIQEYMKRMPMKP 854

Query: 239 DAVSWNTMISA------YASKGLWKEAFQLFVEMQEE 269
           + + W T++ A       A   L  EA ++ +E++ +
Sbjct: 855 NTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQ 891


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 190/626 (30%), Positives = 321/626 (51%), Gaps = 40/626 (6%)

Query: 72  VVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           +V DSF  + ++   G +  + QG+ LH  A+  G+    V+   LV  Y  F    +A 
Sbjct: 203 IVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDAR 262

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            + +  ++R  + +N +I  Y++     E++ ++ +    + + D  T  SVL+ACG + 
Sbjct: 263 RVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLR 321

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           D+   + +++  + A       V N L+ +Y K G +  AR +F+ M  +D VS      
Sbjct: 322 DLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVS------ 375

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
                                        WN+I  G +++G+    ++L   M   E   
Sbjct: 376 -----------------------------WNSIISGYIQSGDLMEAMKLFKMMMIMEEQA 406

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           D +  ++ +   + +  LK GK +H + ++       +V NALI MY++C ++  +  +F
Sbjct: 407 DHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIF 466

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                   +TWN+++S             +  +M +S V P+  T    LP+CA +A  +
Sbjct: 467 SSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKR 526

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GKE HC +LR   +   L + N+L+EMY++ G +  +  VF+ MSRRD VT+T +I  Y
Sbjct: 527 LGKEIHCCLLRFG-YESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAY 585

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           G+ GEG  AL+ F +M K+ I PD V  +A++ ACSHSGLV EG   FE+M + Y I P 
Sbjct: 586 GMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPM 645

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH+AC+VDL  R+  ++KA+E I  MP  P +++WA++L AC+   +    E  + +++
Sbjct: 646 IEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRII 705

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P++ GY +L +N YAA   WDK++ +R  ++D  + K PG +W++ G     F   D
Sbjct: 706 ELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGD 765

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYV 694
            S  Q++ IY  L  L  LM   GY+
Sbjct: 766 DSAPQSEAIYKSLEILYSLMAKEGYI 791



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/511 (27%), Positives = 255/511 (49%), Gaps = 55/511 (10%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYPLPWNLLIS 148
           L + +++HA  I+LGL+ +     KL+  Y+ F    ++  +    S  +    WN +I 
Sbjct: 20  LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIR 79

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEW 207
            + ++G + EAL  Y +++  ++  D +T+PSV+KAC  + D + G +V+  I D   E 
Sbjct: 80  AFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFES 139

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            LFV NALV MY + G +  AR++FD+M  RD VSWN++IS Y+S G ++EA +++ E++
Sbjct: 140 DLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELK 199

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
              +  +  T +++                                   L A  ++  +K
Sbjct: 200 NSWIVPDSFTVSSV-----------------------------------LPAFGNLLVVK 224

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G+ +HG A++        V N L+ MY + +    A  +F     +  +++N+M+ GY 
Sbjct: 225 QGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYL 284

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
            L+  EES  +F E      +P+ +T++S+L  C  + +L   K  + Y+L +A F    
Sbjct: 285 KLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYML-KAGFVLES 342

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N L+++YA+ G +  A+ VF+ M  +D V++ S+I+GY   G+   A+KLF+ M   
Sbjct: 343 TVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIM 402

Query: 508 QIKPDHVTMVAVLSACSH-------SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           + + DH+T + ++S  +         GL   G K         GI   L     ++D+Y 
Sbjct: 403 EEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS--------GICIDLSVSNALIDMYA 454

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           + G +  + +I + M  T  +  W T++ AC
Sbjct: 455 KCGEVGDSLKIFSSMG-TGDTVTWNTVISAC 484



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 159/590 (26%), Positives = 278/590 (47%), Gaps = 51/590 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ F+  G   +A E + ++R +  S D    +F  +I  C  +     G  ++   + +
Sbjct: 78  IRAFSKNGLFPEALEFYGKLRESKVSPDKY--TFPSVIKACAGLFDAEMGDLVYEQILDM 135

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G E +  +   LV  Y+   L   A  + +   +R  + WN LIS Y   G+Y EAL +Y
Sbjct: 136 GFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY 195

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            ++++  I  D+FT  SVL A G ++ V  G+ +H   + +     + V+N LV+MY KF
Sbjct: 196 HELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKF 255

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            +   ARR+FD+M  RD+VS+NTMI  Y           L +EM EE V +         
Sbjct: 256 RRPTDARRVFDEMDVRDSVSYNTMICGY-----------LKLEMVEESVRM--------- 295

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                       LE L + +     + SV     L AC H+  L L K I+   ++  + 
Sbjct: 296 -----------FLENLDQFKPDLLTVSSV-----LRACGHLRDLSLAKYIYNYMLKAGFV 339

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               VRN LI +Y++C D+  A  +F     K  ++WNS++SGY       E+  LF+ M
Sbjct: 340 LESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMM 399

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
                + +++T   ++ +  R+A+L+ GK  H   ++  +  + L + N+L++MYA+ G+
Sbjct: 400 MIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICID-LSVSNALIDMYAKCGE 458

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           V ++  +F  M   D VT+ ++I+     G+    L++  +M K+++ PD  T +  L  
Sbjct: 459 VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C+       G K+       +G   +L+    ++++Y + G L  +  +  +M       
Sbjct: 519 CASLAAKRLG-KEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDV-V 576

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY----YVLIANMYAAT 628
            W  ++ A  ++   G GE A E   +   E SG      V IA +YA +
Sbjct: 577 TWTGMIYAYGMY---GEGEKALETFADM--EKSGIVPDSVVFIAIIYACS 621



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 98/243 (40%), Gaps = 16/243 (6%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+ +   +  T++R +    D+   +F   +  C  + A   GK++H C +  G E    
Sbjct: 488 GDFATGLQVTTQMRKSEVVPDMA--TFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQ 545

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  Y+      N+  + E  + R  + W  +I  Y   G   +AL  +  M+   
Sbjct: 546 IGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSG 605

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRV------VHSCIDACHEWSLFVHNALVSMYGKFGQ 224
           I  D+  + +++ AC     VD G         H  ID   E     +  +V +  +  +
Sbjct: 606 IVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEH----YACVVDLLSRSQK 661

Query: 225 VDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQL---FVEMQEEGVEVNVITWNT 280
           +  A      M ++ DA  W +++ A  + G  + A ++    +E+  +    +++  N 
Sbjct: 662 ISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNA 721

Query: 281 IAG 283
            A 
Sbjct: 722 YAA 724


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 304/559 (54%), Gaps = 20/559 (3%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF--TYPSVLKACGEMMDVDFGRVVHS- 199
           W   I     +G + +A+ ++ +M++      +   + P+ LK+C  +     G  +H+ 
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            I +      F  NAL+++Y K              L+   V+   ++    S   ++  
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPC---------SYLDSTGVA---IVDVPGSSTAFESV 123

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++F EM    +E +V++WNT+  GC   G     L  + +M  +    DS      L  
Sbjct: 124 RKVFDEM----IERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPI 179

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
            +    +K G E+HG A R  +     V ++LI MY+ C    ++  +F     +  I W
Sbjct: 180 FAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILW 239

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           NS+L+G       EE+  +FR M ++GV P  VT +S++P+C  +A+L+ GK+ H Y++ 
Sbjct: 240 NSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIC 299

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              F +++ + +SL++MY + G++  A  +FD MS  D V++T++I GY + G  R AL 
Sbjct: 300 GG-FEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALV 358

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           LFE M     KP+H+T +AVL+ACSH+GLV +G K F+ M++ YGI P LEHFA + D  
Sbjct: 359 LFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTL 418

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
           GRAG L++A   I+KM   PT+++W+TLL AC++H+NT + E  A+K++E  P + G +V
Sbjct: 419 GRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHV 478

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           +++NMY+A+G W++ A +R  MR  G++K P C+W++  +    F+  D S+     I  
Sbjct: 479 VLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIID 538

Query: 680 LLGGLTELMKDAGYVVKEE 698
            L   +E M   G+V   E
Sbjct: 539 ALNAFSEQMAREGHVPNTE 557



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/452 (21%), Positives = 187/452 (41%), Gaps = 55/452 (12%)

Query: 42  ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           + ++  A  G+   A   F R+R +AA    V  S    +  C  +   A G  LHA AI
Sbjct: 18  QQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAI 77

Query: 102 ALGLEKNPVLVPKLVTFY-------------------ASFSLYNNACFLVENSNIRYPLP 142
             G   +      L+  Y                    S + + +   + +    R  + 
Sbjct: 78  RSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVS 137

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN L+     +G + EAL   ++M     R D+FT  +VL    E  DV  G  VH    
Sbjct: 138 WNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAF 197

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               +  +FV ++L+ MY    + D + ++FD +  RD + WN++++  A  G  +EA  
Sbjct: 198 RNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALG 257

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F  M + GV    +T++++                                   +  C 
Sbjct: 258 IFRRMLQAGVRPVPVTFSSL-----------------------------------IPVCG 282

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
           ++ +L+ GK++H   + G + +   + ++LI MY +C ++  A+ +F   +   +++W +
Sbjct: 283 NLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTA 342

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+ GY     A E+  LF  M     +PN++T  ++L  C+    +  G ++   +    
Sbjct: 343 MIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHY 402

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
                L  + +L +   R+G++ EA +    M
Sbjct: 403 GIVPTLEHFAALADTLGRAGELDEAYNFISKM 434



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 131/297 (44%), Gaps = 15/297 (5%)

Query: 33  EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQ 92
           +HI+  +LL      A  G++ +A   F R+ + A    V + +F+ +I  CG + +L  
Sbjct: 235 DHILWNSLLAGC---AQNGSVEEALGIFRRM-LQAGVRPVPV-TFSSLIPVCGNLASLRF 289

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           GKQLHA  I  G E N  +   L+  Y      + A  + +  +    + W  +I  Y  
Sbjct: 290 GKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYAL 349

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLF 210
            G   EAL ++++M+    + ++ T+ +VL AC     VD G      +   +    +L 
Sbjct: 350 HGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLE 409

Query: 211 VHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEM 266
              AL    G+ G++D A     KM ++  A  W+T++ A   + +  L +E  +  +E+
Sbjct: 410 HFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMEL 469

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           +   +  +V+  N  +     +G +     L   MR +    D   + I + +  HV
Sbjct: 470 EPRSIGSHVVLSNMYSA----SGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHV 522


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 176/599 (29%), Positives = 317/599 (52%), Gaps = 42/599 (7%)

Query: 60  FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
           + R+R+     D V+  F+H++  C + +   +G+++H   +  G   +  +   LV  Y
Sbjct: 91  YNRMRVCLKECDNVV--FSHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFTGLVDMY 147

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYP 179
           A       +  + + +  R    W+ +I+ YV++    + L ++ +M+   I  +  T  
Sbjct: 148 AKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLG 207

Query: 180 SVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLER 238
            ++ AC ++  +  G+ +H  +  C  E   ++  AL+ +Y K G V  AR +FD++   
Sbjct: 208 ILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGI 267

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           D VSW  MI  Y   G  +EA +LF++ ++  V  N +T                     
Sbjct: 268 DIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVT--------------------- 306

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSR 357
                       +A+V    +CS +  L LG+ IHG +++   G  +  V N+L+  Y++
Sbjct: 307 ------------IASV--FSSCSQLLNLNLGRSIHGLSIK--LGSRDPIVTNSLVDFYAK 350

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           C+  R A  +F+  +++ ++ WNS++S ++    A E+  LF +M    V P+ VT+ S+
Sbjct: 351 CQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSV 410

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           L  CA +  LQ G  FH Y ++R + + ++ +  +L+  YA+ G    A+ +FD M ++ 
Sbjct: 411 LSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKS 470

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            VT++++I+GYGIQG GR +L +F +M K ++KP+     ++LSACSH+G++ EG + F 
Sbjct: 471 TVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFT 530

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
            +   Y + P  +H+ CMVDL  RAG L +A + I KMP  P  +++   L  C +H   
Sbjct: 531 MICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRF 590

Query: 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
            +GE A +++LE  P ++ YYVL+ N+YA+   W K+ +VR  M+  G+ K PGC+ ++
Sbjct: 591 DLGELAIKRMLELHPGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTPGCSLME 649



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 146/505 (28%), Positives = 238/505 (47%), Gaps = 44/505 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISLYVR 152
           ++HA  +  GL ++     KLV+ Y SF   + A  + +   I +P  L W ++I  Y  
Sbjct: 23  EMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDT--IPHPDFLSWKVIIRWYFL 80

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVH 212
           +  + + +  Y +M+      DN  +  VLKAC E  + D GR VH  I        FV 
Sbjct: 81  NSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVF 140

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
             LV MY K G+++ +R +FD+ L+R+  SW++MI+ Y    L ++   LF  M+EE +E
Sbjct: 141 TGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIE 200

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            N IT               G+L                     + AC  +GAL  GK +
Sbjct: 201 ANQITL--------------GIL---------------------VHACKKLGALHQGKWL 225

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           HG  ++        +  AL+ +Y++C  +R A  +F       I++W +M+ GYT   C 
Sbjct: 226 HGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCP 285

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           EE+  LF +  +  V PN VTIAS+   C+++ NL  G+  H   ++  + +   ++ NS
Sbjct: 286 EEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIK--LGSRDPIVTNS 343

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           LV+ YA+     +A+ VF+ +S RD V + S+I+ +   G    AL+LF +M    + PD
Sbjct: 344 LVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPD 403

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEI 571
            VT+V+VLSAC+    +  G   F       G+     +    ++  Y + G    A+ I
Sbjct: 404 AVTLVSVLSACASLNALQVG-SSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVI 462

Query: 572 ITKMPYTPTSAMWATLLGACQIHRN 596
              M    T   W+ ++    I  N
Sbjct: 463 FDGMDQKST-VTWSAMISGYGIQGN 486



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 6/155 (3%)

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
           LC  +  L    E H Y++ + +  + L     LV +Y   G++  A+ VFD +   D +
Sbjct: 14  LCDNINTLM---EMHAYLVVQGLTRD-LSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFL 69

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           ++  +I  Y +  E R  +  +  M     + D+V    VL ACS S    EG+K   ++
Sbjct: 70  SWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQI 129

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
                  P    F  +VD+Y + G +  ++ +  +
Sbjct: 130 VKFGN--PDSFVFTGLVDMYAKCGEIECSRSVFDE 162


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 194/658 (29%), Positives = 339/658 (51%), Gaps = 39/658 (5%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
           ++ +  ++ +A RG   +A   F R++     H+V       I+     + A      +H
Sbjct: 116 VSFVTLVQGYALRGGFEEAAGLFRRLQ--REGHEVNHFVLTTILKVLVAMDAPGLTCCIH 173

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
           ACA  LG ++N  +   L+  Y+     ++A  + +    +  + W  ++S Y  +    
Sbjct: 174 ACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPE 233

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALV 216
           +AL  + +M+    + + F   SVLKA   +     G+ +H C +    +    V  AL+
Sbjct: 234 DALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALL 293

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K G ++ AR +F+ +   D + W+ +IS YA     ++AF++F+ M    V  N  
Sbjct: 294 DMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEF 353

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           +               GVL+                      AC++V  L LG++IH   
Sbjct: 354 S-------------LSGVLQ----------------------ACANVAFLDLGQQIHNLV 378

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  Y     V NAL+ +Y++C+++ ++  +F+   + + ++WN+++ GY     AE++ 
Sbjct: 379 IKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDAL 438

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            +F+EM  + V    VT +S+L  CA  A+++H  + H  I  ++ FN   ++ NSL++ 
Sbjct: 439 SVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLI-EKSTFNNDTIVCNSLIDT 497

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G + +A  VF+ + + D V++ ++I+GY + G    AL+LF  MNK+  KP+ VT 
Sbjct: 498 YAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTF 557

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           VA+LS C  +GLV +G   F  MT  + I P ++H+ C+V L GRAG LN A + I  +P
Sbjct: 558 VALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIP 617

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
            TP+  +W  LL +C +H+N  +G+++AEK+LE  P++   YVL++NMYAA G  D++A 
Sbjct: 618 STPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVAL 677

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +R  MR++GV+K  G +WV+       F V    +   + I  +L  L       GYV
Sbjct: 678 LRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYV 735



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 205/443 (46%), Gaps = 48/443 (10%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           D++    +L+ C    D   GR VH+ +       +   F  N L+++Y K G +  ARR
Sbjct: 46  DSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARR 105

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LFD M ER+ VS+ T++  YA +G ++EA  LF  +Q EG EVN     TI         
Sbjct: 106 LFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTI--------- 156

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
               L++L  M              GL  C H  A KLG +      R  +     V ++
Sbjct: 157 ----LKVLVAMDAP-----------GLTCCIHACACKLGHD------RNAF-----VGSS 190

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI  YS C  + HA  +F     K  +TW +M+S Y+  D  E++   F +M  +G +PN
Sbjct: 191 LIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPN 250

Query: 411 YVTIASILPLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
              + S+L     +++   GK  H C +  + + +    +  +L++MYA+ G + +A++V
Sbjct: 251 PFVLTSVLKAAVCLSSAVLGKGIHGCAV--KTLCDTEPHVGGALLDMYAKCGYIEDARTV 308

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+++   D + ++ LI+ Y    +   A ++F  M ++ + P+  ++  VL AC++   +
Sbjct: 309 FEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFL 368

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL- 588
             GQ Q   +    G   +L     ++D+Y +   +  + EI   +        W T++ 
Sbjct: 369 DLGQ-QIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSL-RDANEVSWNTIIV 426

Query: 589 GACQIHRNTGIGEWAAEKLLETR 611
           G CQ    +G  E A     E R
Sbjct: 427 GYCQ----SGFAEDALSVFQEMR 445



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/511 (24%), Positives = 229/511 (44%), Gaps = 58/511 (11%)

Query: 74  LDSFA---HIIFCCGKVKALAQGKQLHACAIALG--LEKNPVLVPKLVTFYASFSLYNNA 128
           LDS+A    +  C  +  A A G+ +HA  +  G   + +      L+  YA       A
Sbjct: 45  LDSYACARLLQRCIARGDARA-GRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAA 103

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             L +    R  + +  L+  Y   G + EA  +++++Q      ++F   ++LK    M
Sbjct: 104 RRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAM 163

Query: 189 MDVDFGRVVHSCIDAC---HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
                   +H+C  AC   H+ + FV ++L+  Y   G V  AR +FD ++ +DAV+W  
Sbjct: 164 DAPGLTCCIHAC--ACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTA 221

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           M+S Y+   + ++A   F +M+  G + N     ++                        
Sbjct: 222 MVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSV------------------------ 257

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
                      L A   + +  LGK IHG AV+       +V  AL+ MY++C  +  A 
Sbjct: 258 -----------LKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDAR 306

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F++     +I W+ ++S Y      E++  +F  M RS V PN  +++ +L  CA VA
Sbjct: 307 TVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVA 366

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            L  G++ H  +++   +   L + N+L+++YA+   +  +  +F  +   +EV++ ++I
Sbjct: 367 FLDLGQQIHNLVIKLG-YESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTII 425

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV---VEGQKQFERMTSI 542
            GY   G    AL +F+EM    +    VT  +VL AC+++  +   V+     E+ T  
Sbjct: 426 VGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKST-- 483

Query: 543 YGIFPQLEHFAC--MVDLYGRAGLLNKAKEI 571
              F   +   C  ++D Y + G +  A ++
Sbjct: 484 ---FNN-DTIVCNSLIDTYAKCGCIRDALKV 510


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/639 (28%), Positives = 312/639 (48%), Gaps = 63/639 (9%)

Query: 56  AFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           A E F  ++ +  S D V  + + ++  C  +  L +G QLH+     G+  + ++   L
Sbjct: 228 ALEIFEEMQSSGLSPDCV--TISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSL 285

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           +  Y        A  +    N    + WNL++  + +    A++  ++ QMQ+  IR + 
Sbjct: 286 LDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQ 345

Query: 176 FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
           FTYP +L+ C    ++D G  +HS  +    E  ++V   L+ MY K+G ++ ARR+ + 
Sbjct: 346 FTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEM 405

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           + E+D                                   V++W ++  G ++    K  
Sbjct: 406 LKEKD-----------------------------------VVSWTSMIAGYVQHEYCKDA 430

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L     M+    + D++     +  C+ + A++ G +IH       Y    ++ NAL+ +
Sbjct: 431 LAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNL 490

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y+RC  +R A+  F+    K  ITWN ++SG+      EE+  +F  M +SGV+ N  T 
Sbjct: 491 YARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTF 550

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
            S L   A +A ++ GK+ H  +++     E   + N+L+ +Y + G   +AK  F  MS
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKMEFSEMS 609

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            R+EV++ ++I      G G  AL  F++M K                        EG  
Sbjct: 610 ERNEVSWNTIITSCSQHGRGLEALDFFDQMKK------------------------EGLS 645

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            F+ M+  YGI P+ +H+AC++D++GRAG L++AK+ + +MP    + +W TLL AC++H
Sbjct: 646 YFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLSACKVH 705

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           +N  +GE AA+ LLE  P +S  YVL++N YA TG W    +VR  MRD GVRK PG +W
Sbjct: 706 KNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDRGVRKEPGRSW 765

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           ++  NV   F V D  +  A++IY  L  + + +   GY
Sbjct: 766 IEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 804



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 229/477 (48%), Gaps = 42/477 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           ++HA AI  GL K+ ++   L+  Y+   L   A  + E  + R  + W  ++S Y ++G
Sbjct: 63  EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC---IDACHEWSLFV 211
              EAL +Y+QM    +    +   SVL +C +      GR VH+       C E   FV
Sbjct: 123 LGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSE--TFV 180

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            NAL+++Y + G   +A R+F  M  RD V++NT+IS +A     + A ++F EMQ  G+
Sbjct: 181 GNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGL 240

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             + +T +++                                   L AC+ +G L+ G +
Sbjct: 241 SPDCVTISSL-----------------------------------LAACASLGDLQKGTQ 265

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H    +        +  +L+ +Y +C D+  A ++F +    +++ WN +L  +  ++ 
Sbjct: 266 LHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQIND 325

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             +S  LF +M  +G+ PN  T   IL  C     +  G++ H   ++   F   + +  
Sbjct: 326 LAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTG-FESDMYVSG 384

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            L++MY++ G + +A+ V +++  +D V++TS+IAGY      + AL  F+EM K  I P
Sbjct: 385 VLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWP 444

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           D++ + + +S C+    + +G +   R+  + G    +  +  +V+LY R G + +A
Sbjct: 445 DNIGLASAISGCAGIKAMRQGLQIHARVY-VSGYSGDVSIWNALVNLYARCGRIREA 500



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 183/385 (47%), Gaps = 38/385 (9%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            V N L+ +Y K G V  ARR+F+++  RD VSW  M+S YA  GL +EA  L+ +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRA 137

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           GV       +++   C +        EL ++                            G
Sbjct: 138 GVVPTPYVLSSVLSSCTKA-------ELFAQ----------------------------G 162

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           + +H    +  +     V NALIT+Y RC   R A  +F     +  +T+N+++SG+   
Sbjct: 163 RSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQC 222

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              E +  +F EM  SG+ P+ VTI+S+L  CA + +LQ G + H Y+ +  M +++++ 
Sbjct: 223 AHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIME 282

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
             SL+++Y + G V  A  +F+L +R + V +  ++  +G   +   + +LF +M    I
Sbjct: 283 -GSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGI 341

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +P+  T   +L  C+ +G +  G+ Q   ++   G    +     ++D+Y + G L KA+
Sbjct: 342 RPNQFTYPCILRTCTCTGEIDLGE-QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 570 EIITKMPYTPTSAMWATLLGACQIH 594
            ++ +M        W +++     H
Sbjct: 401 RVL-EMLKEKDVVSWTSMIAGYVQH 424



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 25/218 (11%)

Query: 33  EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQ 92
           EH   I     +  FA  G   +A + F R+  +   H+V   +F   +     +  + Q
Sbjct: 508 EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVF--TFVSALSASANLAEIKQ 565

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           GKQ+HA  I  G      +   L++ Y     + +A       + R  + WN +I+   +
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQ 625

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVH 212
            G   EAL  + QM+   +        S  K+  +   +      ++C+           
Sbjct: 626 HGRGLEALDFFDQMKKEGL--------SYFKSMSDKYGIRPRPDHYACV----------- 666

Query: 213 NALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
              + ++G+ GQ+D A++  ++M +  DA+ W T++SA
Sbjct: 667 ---IDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLSA 701


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 199/621 (32%), Positives = 320/621 (51%), Gaps = 40/621 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  II  C     +  G QLH   I  G + + +    L++ Y  F    +A  +    
Sbjct: 183 TFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMI 242

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFG 194
           + +  + W  +I+ + + G+  EAL +++ M  + +   N F + SV  AC  ++  +FG
Sbjct: 243 STKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFG 302

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +   C       ++F   +L  MY KFG +  A+R F ++   D VSWN +I+A A+ 
Sbjct: 303 RQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALANS 362

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
            +  EA   F +M   G+  + IT+                L LL               
Sbjct: 363 DV-NEAIYFFCQMIHMGLMPDDITF----------------LNLLC-------------- 391

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                AC     L  G +IH   ++    +   V N+L+TMY++C +L  A+ +FK  +E
Sbjct: 392 -----ACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISE 446

Query: 374 K-SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
             ++++WN++LS  +      E+  LF+ M  S  +P+ +TI +IL  CA + +L+ G +
Sbjct: 447 NGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQ 506

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HC+ ++  +  + + + N L++MYA+ G +  A+ VFD     D V+++SLI GY   G
Sbjct: 507 VHCFSVKSGLVVD-VSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFG 565

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G+ AL LF  M    ++P+ VT + VLSACSH GLV EG   +  M    GI P  EH 
Sbjct: 566 LGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHV 625

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +CMVDL  RAG L +A+  I K  + P   MW TLL +C+ H N  I E AAE +L+  P
Sbjct: 626 SCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAENILKLDP 685

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            NS   VL++N++A+ G W ++A++R  M+ +GV+K+PG +W++  +    F  +D+S+ 
Sbjct: 686 SNSAALVLLSNIHASAGNWKEVARLRNLMKQMGVQKVPGQSWIEVKDQIHVFFSEDSSHP 745

Query: 673 QAQEIYPLLGGLTELMKDAGY 693
           Q   IY +L  L   M D GY
Sbjct: 746 QRGNIYTMLEDLWLQMLDDGY 766



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 220/480 (45%), Gaps = 45/480 (9%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYK-QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           L  N  I+L  +   Y EAL  +   +++  I+ +  TY +++ AC  +  + +G+ +H 
Sbjct: 45  LSTNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHD 104

Query: 200 CI--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            I    C    L + N +++MYGK G +  AR+ FD M  R  VSW  MIS Y+  G   
Sbjct: 105 HILKSNCQP-DLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQEN 163

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           +A  ++++M                   LR+G F   L   S ++               
Sbjct: 164 DAIIMYIQM-------------------LRSGYFPDQLTFGSIIK--------------- 189

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC   G + LG ++HG  ++  Y  +   +NALI+MY++   + HA  +F M + K +I
Sbjct: 190 -ACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLI 248

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCY 436
           +W SM++G+T L    E+ +LFR+MFR GV +PN     S+   C  +   + G++    
Sbjct: 249 SWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGM 308

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
             +  +   ++    SL +MYA+ G +P AK  F  +   D V++ ++IA      +   
Sbjct: 309 CAKFGL-GRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALA-NSDVNE 366

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A+  F +M    + PD +T + +L AC     + +G +    +  + G+         ++
Sbjct: 367 AIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKM-GLDKVAAVCNSLL 425

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL--ETRPEN 614
            +Y +   L+ A  +   +        W  +L AC  H+  G      + +L  E +P+N
Sbjct: 426 TMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDN 485



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/515 (23%), Positives = 233/515 (45%), Gaps = 40/515 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++ ++I  C  V++L  GK++H   +    + + VL   ++  Y       +A    +  
Sbjct: 82  TYVNLILACTNVRSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTM 141

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R  + W ++IS Y ++G   +A+ +Y QM       D  T+ S++KAC    D+D G 
Sbjct: 142 QLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGG 201

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   I + ++  L   NAL+SMY KFGQ+  A  +F  +  +D +SW +MI+ +   G
Sbjct: 202 QLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLG 261

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF +M  +GV                              +  E    SV   
Sbjct: 262 YEIEALYLFRDMFRQGV-----------------------------YQPNEFIFGSV--- 289

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
               AC  +   + G++I G   +   G       +L  MY++   L  A   F      
Sbjct: 290 --FSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESP 347

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +++WN++++   + D   E+ + F +M   G+ P+ +T  ++L  C     L  G + H
Sbjct: 348 DLVSWNAIIAALANSD-VNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIH 406

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGYGIQGE 493
            YI++  + ++   + NSL+ MY +   + +A +VF D+    + V++ ++++      +
Sbjct: 407 SYIIKMGL-DKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQ 465

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A +LF+ M  ++ KPD++T+  +L  C+   + +E   Q    +   G+   +    
Sbjct: 466 PGEAFRLFKLMLFSENKPDNITITTILGTCAEL-VSLEVGNQVHCFSVKSGLVVDVSVSN 524

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            ++D+Y + GLL  A+ +       P    W++L+
Sbjct: 525 RLIDMYAKCGLLKHARYVFDSTQ-NPDIVSWSSLI 558


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/621 (29%), Positives = 319/621 (51%), Gaps = 43/621 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++        +  G Q+HA  +  G E    +   L+  Y    +  +A  + ++ 
Sbjct: 207 TFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSM 266

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R  + WN++I  Y   GFY E   ++ +M+   ++     + + LK C +  +++F +
Sbjct: 267 VVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTK 326

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASK 253
            +H   +   +E++  +  AL+  Y K   VD A +LF       + V+W  MI  +   
Sbjct: 327 QLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQN 386

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
              ++A  LF +M  EGV  N  T++T+  G   +        LLS              
Sbjct: 387 NNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSS--------LLS-------------- 424

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                            ++H   ++  Y +  +V  AL+  Y +  ++  +  +F     
Sbjct: 425 -----------------QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPA 467

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR-VANLQHGKE 432
           K I+ W++ML+G      +E++  +F ++ + GV+PN  T +S++  C+   A ++HGK+
Sbjct: 468 KDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQ 527

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H   ++    N  L + ++L+ MY++ G +  A+ VF     RD V++ S+I GYG  G
Sbjct: 528 IHATAVKSGKSNA-LCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHG 586

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
           + + AL++F+ M    +  D VT + VL+AC+H+GLV EG+K F  M   Y I  ++EH+
Sbjct: 587 DAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHY 646

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +CMVDLY RAG+ +KA +II  MP+  +  +W TLL AC++HRN  +G+ AAEKL+  +P
Sbjct: 647 SCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQP 706

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            ++  YVL++N++A  G W++ A VR  M +  V+K  GC+W++  N    FL  D S+ 
Sbjct: 707 NDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHP 766

Query: 673 QAQEIYPLLGGLTELMKDAGY 693
            +  +Y  L  L+  +KD GY
Sbjct: 767 FSDLVYAKLEELSIKLKDMGY 787



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/533 (25%), Positives = 253/533 (47%), Gaps = 44/533 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L DF+   +  +A   F  +  +    D +  S A  +  CG +     G+Q+H  ++  
Sbjct: 76  LFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCA--LKVCGVLFDQVVGRQVHCQSLKS 133

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G  ++  +   LV  Y     + +   + +   I+  + W  L+S Y R+G   E + + 
Sbjct: 134 GFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLI 193

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
            QMQ   +  + FT+ +VL A  +   ++ G  VH+ I     E++ FV NAL+ MY K 
Sbjct: 194 NQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKS 253

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V  A  +FD M+ RD+V+WN MI  YA+ G + E FQ+F  M+  GV+++   + T  
Sbjct: 254 EMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCT-- 311

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L  CS    L   K++H   V+  Y 
Sbjct: 312 ---------------------------------ALKLCSQQRELNFTKQLHCGVVKNGYE 338

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMT-AEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
             +++R AL+  YS+C  +  A+ LF M  A  +++TW +M+ G+   +  E++  LF +
Sbjct: 339 FAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQ 398

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M R GV PN+ T +++  L  + ++L    + H  I+ +A + +   +  +L++ Y ++G
Sbjct: 399 MSREGVRPNHFTYSTV--LAGKPSSLL--SQLHAQII-KAYYEKVPSVATALLDAYVKTG 453

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            V E+  VF  +  +D V +++++ G     +   A+++F ++ K  +KP+  T  +V++
Sbjct: 454 NVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVIN 513

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           ACS S   VE  KQ        G    L   + ++ +Y + G +  A+++ T+
Sbjct: 514 ACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTR 566



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 195/452 (43%), Gaps = 43/452 (9%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCI 201
           +N L+  + R+    EAL ++K + S  +  D  T    LK CG + D   GR VH   +
Sbjct: 72  YNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSL 131

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            +     + V  +LV MY K    +  R +FD+M                          
Sbjct: 132 KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEM-------------------------- 165

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                   G++ NV++W ++  G  R G    V+ L+++M+ +    +       LGA +
Sbjct: 166 --------GIK-NVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALA 216

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
               ++ G ++H   V+  +     V NALI MY + + +  A  +F     +  +TWN 
Sbjct: 217 DESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNI 276

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+ GY  +    E   +F  M  +GV+ +     + L LC++   L   K+ HC +++  
Sbjct: 277 MIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNG 336

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKL 500
            +     +  +L+  Y++   V EA  +F +  +  + VT+T++I G+        A+ L
Sbjct: 337 -YEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDL 395

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F +M++  ++P+H T   VL+    S L    Q   + + + Y   P +     ++D Y 
Sbjct: 396 FCQMSREGVRPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSVA--TALLDAYV 450

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           + G + ++  +   +P     A  A L G  Q
Sbjct: 451 KTGNVVESARVFYSIPAKDIVAWSAMLTGLAQ 482



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 187/462 (40%), Gaps = 92/462 (19%)

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A +LFD+   +D   +N ++  ++     +EA  LF ++   G+ V+ +T +     C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC-- 114

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                GVL             D V                +G+++H  +++  + E  +V
Sbjct: 115 -----GVL------------FDQV----------------VGRQVHCQSLKSGFLEDVSV 141

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
             +L+ MY + +D      +F     K++++W S+LSGY      +E   L  +M   GV
Sbjct: 142 GTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGV 201

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN  T A++L   A  + ++ G + H  I++   F     + N+L+ MY +S  V +A+
Sbjct: 202 NPNGFTFATVLGALADESIIEGGVQVHAMIVKNG-FEFTTFVCNALICMYLKSEMVGDAE 260

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS--- 524
           +VFD M  RD VT+  +I GY   G      ++F  M    +K         L  CS   
Sbjct: 261 AVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQR 320

Query: 525 --------HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
                   H G+V  G +           F Q    A MV  Y +   +++A ++ +   
Sbjct: 321 ELNFTKQLHCGVVKNGYE-----------FAQDIRTALMV-TYSKCSSVDEAFKLFSMAD 368

Query: 577 YTPTSAMWATLLGA--------------CQIHRNTGI--GEWAAEKLLETRPENSGYYVL 620
                  W  ++G               CQ+ R  G+    +    +L  +P +     L
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSRE-GVRPNHFTYSTVLAGKPSS-----L 422

Query: 621 IANMYAA--TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           ++ ++A      ++K+  V T + D         A+V  GNV
Sbjct: 423 LSQLHAQIIKAYYEKVPSVATALLD---------AYVKTGNV 455



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 20/251 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F    N  KA + F ++    +   V  + F +     GK  +L    QLHA  I    E
Sbjct: 383 FVQNNNNEKAVDLFCQM----SREGVRPNHFTYSTVLAGKPSSLLS--QLHAQIIKAYYE 436

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEAL 160
           K P +   L+  Y           +VE++ + Y +P      W+ +++   +     +A+
Sbjct: 437 KVPSVATALLDAYV------KTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAM 490

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGE-MMDVDFGRVVH-SCIDACHEWSLFVHNALVSM 218
            V+ Q+    ++ + +T+ SV+ AC      V+ G+ +H + + +    +L V +AL++M
Sbjct: 491 EVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTM 550

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G ++ A ++F +  ERD VSWN+MI+ Y   G  K+A ++F  MQ +G+ ++ +T+
Sbjct: 551 YSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTF 610

Query: 279 NTIAGGCLRTG 289
             +   C   G
Sbjct: 611 IGVLTACTHAG 621



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
           R+A+ LF  T  K I  +N +L  ++  +   E+  LF+++  SG+  + +T++  L +C
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
             + +   G++ HC  L+   F E + +  SLV+MY ++    + + +FD M  ++ V++
Sbjct: 115 GVLFDQVVGRQVHCQSLKSG-FLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSW 173

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
           TSL++GY   G     + L  +M    + P+  T   VL A +    ++EG  Q   M  
Sbjct: 174 TSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADES-IIEGGVQVHAMIV 232

Query: 542 IYGIFPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             G   +   F C  ++ +Y ++ ++  A+ +   M     S  W  ++G 
Sbjct: 233 KNGF--EFTTFVCNALICMYLKSEMVGDAEAVFDSM-VVRDSVTWNIMIGG 280


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/649 (28%), Positives = 325/649 (50%), Gaps = 43/649 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASH-DVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           +  +    + S+A   F  +R+ +    D  + S AH    CG    +  G+ LH  A+ 
Sbjct: 87  ISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHK--ACGLNSDVNYGELLHGYAVK 144

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            GL  +  +   L+  Y           +     +R  + W  +I+  VR G+  EAL  
Sbjct: 145 TGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVY 204

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           + +M   R+  D++T+   LKAC +   +++GR +H+  +    + S FV N L +MY K
Sbjct: 205 FSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNK 264

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G+++    LF+KM  RD                                   V++W TI
Sbjct: 265 CGKLEYGLTLFEKMSMRD-----------------------------------VVSWTTI 289

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
               ++ G  +  ++   RMR  +   +       +  C+++  ++ G+++H   +    
Sbjct: 290 ITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGL 349

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               +V N+++TMY++C  L  + ++F     + I++W+++++GY+      E+  L   
Sbjct: 350 AASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSW 409

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   G +P    +AS+L  C  +A L+HGK+ H Y+L   + +  ++L ++L+ MY + G
Sbjct: 410 MRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVL-SALINMYCKCG 468

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + EA  +FD     D V++T++I GY   G  R  + LFE++ +  ++PD VT + VLS
Sbjct: 469 SIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLS 528

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSH+GLV  G + F  M+  Y I P  EH+ CM+DL  RAG L+ A+ +I  MP+    
Sbjct: 529 ACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDD 588

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
            +W+TLL AC++H +   G   AE++L+  P  +G ++ +AN+YA+ G W + A +R  M
Sbjct: 589 VVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLM 648

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY---PLLGGLTEL 687
           +  GV K PG +W+   ++   F+  D S+ Q ++IY    LL   TEL
Sbjct: 649 KSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTEL 697



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 215/451 (47%), Gaps = 47/451 (10%)

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKAC 185
           NA  + +  + +  + W  LIS YV     +EAL ++K M+    +R D F      KAC
Sbjct: 67  NARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKAC 126

Query: 186 GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
           G   DV++G ++H   +      S+FV +AL+ MY K G++   RR+F +M  R+ VSW 
Sbjct: 127 GLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWT 186

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            +I+     G  KEA   F EM    VE                                
Sbjct: 187 AIITGLVRAGYNKEALVYFSEMWRSRVE-------------------------------- 214

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
               DS    I L AC+  GAL  G+EIH  A++  +     V N L TMY++C  L + 
Sbjct: 215 ---YDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYG 271

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             LF+  + + +++W ++++    +   E +   F  M  S V PN  T A+++  CA +
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
           A ++ G++ H  IL   +    L + NS++ MYA+ G++  +  +F  M+RRD V+++++
Sbjct: 332 ARIEWGEQLHALILHLGL-AASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTI 390

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           IAGY   G    A +L   M     KP    + +VLSAC +  ++  G++    + SI  
Sbjct: 391 IAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSI-- 448

Query: 545 IFPQLEHFA----CMVDLYGRAGLLNKAKEI 571
               LEH A     ++++Y + G + +A  I
Sbjct: 449 ---GLEHTAMVLSALINMYCKCGSIEEASRI 476



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 169/370 (45%), Gaps = 37/370 (10%)

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G +  ARR+FDKM ++D +SW T+IS Y +     EA  LF  M+ E           
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVE----------- 109

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                LR   F  +L L  +                  AC     +  G+ +HG AV+  
Sbjct: 110 ---SGLRIDPF--ILSLAHK------------------ACGLNSDVNYGELLHGYAVKTG 146

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                 V +AL+ MY++   +     +F     +++++W ++++G       +E+   F 
Sbjct: 147 LVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFS 206

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           EM+RS VE +  T A  L  CA    L +G+E H   +++  F+    + N+L  MY + 
Sbjct: 207 EMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKG-FDVSSFVANTLATMYNKC 265

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           GK+    ++F+ MS RD V++T++I      G+   A++ F  M ++ + P+  T  AV+
Sbjct: 266 GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI 325

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           S C++   +  G+ Q   +    G+   L     ++ +Y + G L  +  I  +M     
Sbjct: 326 SGCANLARIEWGE-QLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDI 384

Query: 581 SAMWATLLGA 590
            + W+T++  
Sbjct: 385 VS-WSTIIAG 393



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN-KNQI 509
           N  ++   ++G +  A+ +FD MS++DE+++T+LI+GY    +   AL LF+ M  ++ +
Sbjct: 53  NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGL 112

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           + D   +     AC  +  V  G+          G+   +   + ++D+Y + G + + +
Sbjct: 113 RIDPFILSLAHKACGLNSDVNYGE-LLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGR 171

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
            +  +MP     +  A + G  +   N     + +E +  +R E   Y   IA
Sbjct: 172 RVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSE-MWRSRVEYDSYTFAIA 223


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 193/624 (30%), Positives = 319/624 (51%), Gaps = 69/624 (11%)

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           YA     ++A    E+   R  + WN++I+   + G   EAL +  +M  + +R D+ TY
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 179 PSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
            S L AC  +  + +G+ +H+  I +  +   +V +AL+ +Y K G              
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS------------- 320

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
                             +KEA ++F  +Q+     N ++W  + GG L+   F   +EL
Sbjct: 321 ------------------FKEAKRVFNSLQDR----NSVSWTVLIGGSLQYECFSKSVEL 358

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
            ++MR +   +D  A    +  C +   L LG+++H   ++  +     V N+LI++Y++
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 358 CKDLRHAYILFKMTAEKSI-------------------------------ITWNSMLSGY 386
           C DL++A  +F   +E+ I                               ITWN+ML  Y
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAY 478

Query: 387 THLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
                 E+   ++  M  +  V P++VT  ++   CA +   + G +   + ++  +   
Sbjct: 479 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLI-L 537

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           ++ + N+ + MY++ G++ EA+ +FDL++ +D V++ ++I GY   G G+ A K F++M 
Sbjct: 538 NVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDML 597

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
               KPD+++ VAVLS CSHSGLV EG+  F+ MT ++GI P LEHF+CMVDL GRAG L
Sbjct: 598 SKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHL 657

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
            +AK++I KMP  PT+ +W  LL AC+IH N  + E AA+ + E    +SG Y+L+A +Y
Sbjct: 658 TEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIY 717

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           +  G  D  A+VR  MRD G++K PG +W++  N    F  DD S+ Q   I   L  L 
Sbjct: 718 SDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELM 777

Query: 686 ELMKDAGYVVKEEFCSEEEIVEEI 709
           E +   GYV  E   SE    E++
Sbjct: 778 EKIAHLGYVRTESPRSEIHHSEKL 801



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 230/515 (44%), Gaps = 24/515 (4%)

Query: 40  LLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVL-DSFAHIIFCCGKVKALAQGKQLHA 98
           L + L+    RG L+ A     R+     +  V L ++  H  F CG   AL+  ++L  
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCG---ALSDARRLLR 63

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
             I    E N +    ++  YA     ++A  L +    R    WN L+S Y +   + +
Sbjct: 64  ADIK---EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLD 120

Query: 159 ALCVYKQMQSRRIRGDN----FTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHN 213
            L  +  M      GD+    FT+  V+K+CG +   +    +         W    V  
Sbjct: 121 GLETFVSMHRS---GDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVET 177

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           ALV M+ + G VD A RLF ++        N+M++ YA       A + F +M E     
Sbjct: 178 ALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER---- 233

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           +V++WN +     ++G  +  L L+  M  +   LDS      L AC+ + +L  GK++H
Sbjct: 234 DVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH 293

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              +R        V +ALI +Y++C   + A  +F    +++ ++W  ++ G    +C  
Sbjct: 294 AKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFS 353

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           +S  LF +M    +  +   +A+++  C    +L  G++ H   L+    N  +++ NSL
Sbjct: 354 KSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSL 412

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + +YA+ G +  A+ VF  MS RD V++TS+I  Y   G    A + F+ M+      + 
Sbjct: 413 ISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR----NA 468

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           +T  A+L A    G   +G K +  M S   + P 
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 35/270 (12%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112
            SK+ E F ++R    + D    + A +I  C     L  G+QLH+  +  G  +  V+ 
Sbjct: 352 FSKSVELFNQMRAELMAIDQF--ALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVS 409

Query: 113 PKLVTFYASFSLYNNACFLV-------------------------------ENSNIRYPL 141
             L++ YA      NA F+                                +  + R  +
Sbjct: 410 NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAI 469

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG-RVVHS 199
            WN ++  Y++ G   + L +Y  M S++ +  D  TY ++ + C ++     G +++  
Sbjct: 470 TWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH 529

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            + A    ++ V NA ++MY K G++  A++LFD +  +D VSWN MI+ Y+  G+ K+A
Sbjct: 530 TVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQA 589

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            + F +M  +G + + I++  +  GC  +G
Sbjct: 590 AKTFDDMLSKGAKPDYISYVAVLSGCSHSG 619



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  + A   G Q+    +  GL  N  +    +T Y+     + A  L +  N +  + W
Sbjct: 514 CADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSW 573

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+ Y + G   +A   +  M S+  + D  +Y +VL  C     V  G++    +  
Sbjct: 574 NAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTR 633

Query: 204 CHEWS--LFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            H  S  L   + +V + G+ G +  A+ L DKM ++  A  W  ++SA
Sbjct: 634 VHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 682


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/588 (30%), Positives = 313/588 (53%), Gaps = 39/588 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  +I  CG       G  +HA  +  G + +  +   L+  Y +      A  + +  
Sbjct: 125 TYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLM 184

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+ Y ++G   EAL V+  M  + I  D  T  SVL  C  + +++ GR
Sbjct: 185 RERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGR 244

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+ ++  +    + V N+L+ MY K G +D A+ +F +M +RD VSW TM++ Y   G
Sbjct: 245 RVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNG 304

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             + A  L   MQ E V+ N +T  ++                                 
Sbjct: 305 DARSALLLCQMMQFESVKPNFVTLASV--------------------------------- 331

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ + +LK G+ +HG A+R        V  ALI MY++C ++  ++ +F   +++
Sbjct: 332 --LSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQ 389

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
               WN+++SG  H   + ++  LF++M    V+PN  T+ S+LP  A + +LQ  +  H
Sbjct: 390 RTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMH 449

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE--VTYTSLIAGYGIQG 492
            Y++R   F   + +   L+++Y++ G +  A ++F+ + ++D+  +T++++IAGYG+ G
Sbjct: 450 GYLIRSG-FLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHG 508

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G  A+ LF++M ++ +KP+ +T  ++L ACSH+GLV EG   F+ M     +  + +H+
Sbjct: 509 HGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHY 568

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            C++DL GRAG L +A E+I  M + P  A+W  LLG+C IH N  +GE AA+ L E  P
Sbjct: 569 TCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEP 628

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
            N+G YVL+AN+Y+A G W     VR  M ++G+RK P  + ++  N+
Sbjct: 629 GNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRNI 676



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 146/529 (27%), Positives = 260/529 (49%), Gaps = 52/529 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPV---LVPKLVTFYASFSLYNNACFLVENSNIRYP 140
           C   K++   KQ+HA  I LGL  +P    L+  L   YA      +A  L +   +R P
Sbjct: 28  CTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDE--LRNP 85

Query: 141 --LPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
               WN +I +Y   G   +AL ++ QM  S R   DN+TYP V+KACG+ +  + G ++
Sbjct: 86  SLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALI 145

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H+  + +  +   FV N+L++MY   G+++VARR+FD M ER  VS              
Sbjct: 146 HARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVS-------------- 191

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
                                WNT+  G  + G  K  L +   M  +    D    V  
Sbjct: 192 ---------------------WNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSV 230

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  CS++  L++G+ +H        GE  +V N+L+ MY++C ++  A ++F    ++ +
Sbjct: 231 LPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDV 290

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++W +M++GY  L+    SA L  +M +   V+PN+VT+AS+L  CA + +L+HG+  H 
Sbjct: 291 VSWTTMMNGYI-LNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHG 349

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           + +R+ + +E +++  +L++MYA+   V  +  VF   S++    + ++I+G    G  R
Sbjct: 350 WAIRQKLESE-VIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSR 408

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A++LF++M    + P+  T+ ++L A +    + + +     +    G   ++E    +
Sbjct: 409 KAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIR-SGFLSRIEVATIL 467

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAM-WATLLGACQIHRNTGIGEWA 603
           +D+Y + G L  A  I   +P      + W+ ++    +H   G GE A
Sbjct: 468 IDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMH---GHGETA 513


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 192/632 (30%), Positives = 318/632 (50%), Gaps = 37/632 (5%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           +A +   C  + AL  GK+LH+ A+      + ++    +  YA      +A  ++ +  
Sbjct: 285 YASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMP 344

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
                 +N +I  Y R     +AL  ++ +    +  D  T    L AC  +     GR 
Sbjct: 345 KCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQ 404

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           VH   + +    ++ V NA++ MYGK   +  A  LFD M  RDAVS             
Sbjct: 405 VHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVS------------- 451

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                                 WN I   C + GN +  L   + M       D      
Sbjct: 452 ----------------------WNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGS 489

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L AC+   AL  G EIH   ++   G    V  AL+ MY +C  +  A  +   T +K+
Sbjct: 490 VLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKT 549

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++WN+++SG++ L  +E++   F  M   GV P+  T A++L  CA +A +  GK+ H 
Sbjct: 550 MVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHA 609

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I+++ + ++ + + ++LV+MY++ G + +++ +F+    RD VT+ +++ GY   G G 
Sbjct: 610 QIIKQELQSD-VYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGE 668

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            ALKLFE M    +KP+H T V+VL AC+H GLV +G   F+ M S YG+ PQ EH++CM
Sbjct: 669 EALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCM 728

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VD+ GR+G +++A  ++ KMP+   + +W  LL  C+IH N  + E A   LL+  P++S
Sbjct: 729 VDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDS 788

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
              VL++N+YA  G W  ++++R  MR   ++K PGC+W++  +    FLV D  + + +
Sbjct: 789 SACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDKGHPRDE 848

Query: 676 EIYPLLGGLTELMKDAGYVVKEEFCSEEEIVE 707
           EIY  LG L   M+  GY+   +   +EE+ E
Sbjct: 849 EIYEKLGVLIGEMQSVGYIPDCDVLLDEEVEE 880



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 213/421 (50%), Gaps = 8/421 (1%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           T+  + + C +   ++ G+  H+ +  C  E + FV N L+ MY K   +D A ++FDKM
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             RD VS+N++IS YAS G    A + F EM E     +V++WN++  G L+ G  +  +
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPER----DVVSWNSVISGFLQNGECRKSI 166

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           ++   M       D  +  + L AC  +    +G ++HG  V+  +       +AL+ MY
Sbjct: 167 DVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMY 226

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++CK L  +  +F    EK+ ++W++M++G    D   E   LF+EM   GV  +    A
Sbjct: 227 AKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYA 286

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           S+   CA ++ L+ GKE H + L+ A F   +++  + ++MYA+ G++ +A+ V   M +
Sbjct: 287 SLFRSCAALSALRLGKELHSHALKSA-FGSDIIVGTATLDMYAKCGRMADAQKVLSSMPK 345

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
               +Y ++I GY     G  ALK F+ + K  +  D +T+   L+AC+     +EG +Q
Sbjct: 346 CSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEG-RQ 404

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
              +         +     ++D+YG+   L +A ++   M      + W  ++ AC+ + 
Sbjct: 405 VHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVS-WNAIIAACEQNG 463

Query: 596 N 596
           N
Sbjct: 464 N 464



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 135/580 (23%), Positives = 256/580 (44%), Gaps = 72/580 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+HI   C K  +L  GKQ HA  I  G E    +   L+  Y      + AC + +  
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 136 NIR-------------------------YPLP------WNLLISLYVRDGFYAEALCVYK 164
            +R                         Y +P      WN +IS ++++G   +++ V+ 
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M    +  D  +   VLKACG + + D G  VH   +    +  +   +AL+ MY K  
Sbjct: 171 EMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCK 230

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++D +  +F ++ E++ VSW+ MI+         E  +LF EMQ  GV V+     +I  
Sbjct: 231 RLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVS----QSIYA 286

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
              R+                               C+ + AL+LGKE+H  A++  +G 
Sbjct: 287 SLFRS-------------------------------CAALSALRLGKELHSHALKSAFGS 315

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V  A + MY++C  +  A  +     + S+ ++N+++ GY   D   ++   F+ + 
Sbjct: 316 DIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLL 375

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           ++G+  + +T++  L  CA +     G++ H   + +++   ++ + N++++MY +   +
Sbjct: 376 KTGLGFDEITLSGALNACASIRGDLEGRQVHGLAV-KSISMSNICVANAILDMYGKCKAL 434

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            EA  +FD+M RRD V++ ++IA     G     L  F  M  ++++PD  T  +VL AC
Sbjct: 435 AEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKAC 494

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           +    +  G +   R+      F      A +VD+Y + G++ KA +I  +     T   
Sbjct: 495 AGRQALNTGMEIHTRIIKSGMGFDSFVG-AALVDMYCKCGMIEKADKIHDRTE-QKTMVS 552

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLE--TRPENSGYYVLI 621
           W  ++    + + +        ++LE    P+N  Y  ++
Sbjct: 553 WNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVL 592



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 137/598 (22%), Positives = 255/598 (42%), Gaps = 52/598 (8%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
            +  F   G   K+ + F  +       D    S A ++  CG ++    G Q+H   + 
Sbjct: 152 VISGFLQNGECRKSIDVFLEMGRCGVGFDRA--SLAVVLKACGALEECDMGVQVHGLVVK 209

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            G + + V    L+  YA     +++  +      +  + W+ +I+  V++    E L +
Sbjct: 210 FGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLEL 269

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           +K+MQ   +      Y S+ ++C  +  +  G+ +HS  + +     + V  A + MY K
Sbjct: 270 FKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAK 329

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G++  A+++   M +    S+N +I  YA      +A + F  + + G+  + IT +  
Sbjct: 330 CGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGA 389

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
              C    + +G LE                                G+++HG AV+   
Sbjct: 390 LNAC---ASIRGDLE--------------------------------GRQVHGLAVKSIS 414

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V NA++ MY +CK L  A  LF M   +  ++WN++++        EE+   F  
Sbjct: 415 MSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFAS 474

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARS 460
           M  S +EP+  T  S+L  CA    L  G E H  I++  M F+    +  +LV+MY + 
Sbjct: 475 MIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDS--FVGAALVDMYCKC 532

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G + +A  + D   ++  V++ ++I+G+ +  +   A K F  M +  + PD+ T  AVL
Sbjct: 533 GMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVL 592

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
             C++   V  G KQ         +   +   + +VD+Y + G +  ++ +  K P    
Sbjct: 593 DTCANLATVGLG-KQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDF 651

Query: 581 SAMWATLLGACQIHRNTGIGEWAAE-----KLLETRPENSGYYVLIANMYAATGCWDK 633
               A L G    + + G+GE A +     +L+  +P N   +V +    A  G  DK
Sbjct: 652 VTWNAMLCG----YAHHGLGEEALKLFESMQLVNVKP-NHATFVSVLRACAHMGLVDK 704



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 14/235 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A ++  C  +  +  GKQ+HA  I   L+ +  +   LV  Y+      ++  + E +
Sbjct: 587 TYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKA 646

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN ++  Y   G   EAL +++ MQ   ++ ++ T+ SVL+AC  M  VD G 
Sbjct: 647 PNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKG- 705

Query: 196 VVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAY 250
            +H       E+ L      ++ +V + G+ G++D A  L  KM  E DAV W  ++S  
Sbjct: 706 -LHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVC 764

Query: 251 ASKG---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
              G   + ++A +  +++  +     V+  N  A      G +  V E+   MR
Sbjct: 765 KIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADA----GMWGNVSEMRKMMR 815


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 208/683 (30%), Positives = 339/683 (49%), Gaps = 84/683 (12%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           N  KA++ F ++       D    +FA  +     +  L   + L   A+  G E++ V+
Sbjct: 204 NHGKAWDIFCKMHREGLLPD--QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVI 261

Query: 112 VPKLVTFYA-SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
              ++  Y+   S+ + A    E+   R    W+ +I+     G    A+ VY++   + 
Sbjct: 262 GTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKS 321

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
           I                               AC         AL++   + G++D AR 
Sbjct: 322 I-------------------------------ACR-------TALITGLAQCGRIDDARI 343

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LF+++ E   VSWN +I+ Y   G+  EA +LF +M       N I+W  +  G  + G 
Sbjct: 344 LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR----NTISWAGMIAGYAQNGR 399

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLG-ACSHVGALKLGKEIHGSAVR-GCYGEYENVR 348
            +  L LL  +  +   L S++++  +  ACS++ AL+ G ++H  AV+ GC  ++ +  
Sbjct: 400 SEEALGLLQELH-RSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGC--QFNSFA 456

Query: 349 -NALITMYSRCKDLRHAYILFKMTAEKSIITWNSML------------------------ 383
            NALITMY +C+++ +A  +F     K I++WNS L                        
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDD 516

Query: 384 -------SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
                  S Y H + + E+   F+ MF     PN   +  +L +C  +   + G++ H  
Sbjct: 517 VSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTV 576

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            ++  M +E L++ N+L+ MY + G   +++ +FDLM  RD  T+ ++I GY   G GR 
Sbjct: 577 AIKLGMDSE-LIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGRE 634

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A+K+++ M    + P+ VT V +L+ACSH+GLV EG K F+ M+  YG+ P  EH+ACMV
Sbjct: 635 AIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMV 694

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GR G +  A++ I  MP  P + +W+ LLGAC+IH+N  IG+ AAEKL    P N+G
Sbjct: 695 DLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAG 754

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YV+++N+Y++ G W ++A+VR  M+  GV K PGC+W    +    F+  D  + Q +E
Sbjct: 755 NYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEE 814

Query: 677 IYPLLGGLTELMKDAGYVVKEEF 699
           I   L  L  L+K  GYV   EF
Sbjct: 815 IVATLEELYTLLKATGYVPDTEF 837



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 210/459 (45%), Gaps = 33/459 (7%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + WN +IS Y  +G    A  +Y  +    +R    T   +L   G +     GRV+
Sbjct: 63  RDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR----TGAILLSGYGRL-----GRVL 113

Query: 198 HS--CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            +    D   E +    NA++S Y + G + +ARRLFD M  RD  SWN+M++ Y     
Sbjct: 114 EARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQ 173

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             +A  LF +M E     N+++W  +  G  R  N     ++  +M  +    D      
Sbjct: 174 MVDARNLFEKMPER----NLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFAS 229

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD-LRHAYILFKMTAEK 374
            L A   +G L + + +   A++  +     +  A++ +YSR    L  A   F+   E+
Sbjct: 230 ALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER 289

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL-QHGKEF 433
           +  TW++M++  +H    + +  ++        +P    + SI    A +  L Q G+  
Sbjct: 290 NEYTWSTMIAALSHGGRIDAAIAVYER------DP----VKSIACRTALITGLAQCGRID 339

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
              IL   +    ++ WN+L+  Y ++G V EAK +FD M  R+ +++  +IAGY   G 
Sbjct: 340 DARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              AL L +E++++ + P   ++ ++  ACS+  + +E   Q   +    G   Q   FA
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNI-VALETGTQVHSLAVKVGC--QFNSFA 456

Query: 554 C--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           C  ++ +YG+   +  A+++ ++M  T     W + L A
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 177/386 (45%), Gaps = 38/386 (9%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           +A +   G+ G+V  AR +FD M  RD ++WN+MISAY   G+   A  L+         
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY--------- 88

Query: 273 VNVITWNTIAGGCLRTG-----NFKGVLELLSRMRTQETYLD--SVATVIGLGACSHVGA 325
                 + I+GG +RTG      +  +  +L   R  +  L+  +VA    +      G 
Sbjct: 89  ------DAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGD 142

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           + + + +  +        +    N+++T Y     +  A  LF+   E+++++W  M+SG
Sbjct: 143 ITMARRLFDAMPSRDVSSW----NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISG 198

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           Y  ++   ++  +F +M R G+ P+    AS L     + NL   +      L+   F  
Sbjct: 199 YGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTG-FER 257

Query: 446 HLLLWNSLVEMYARSGKVPE-AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            +++  +++ +Y+R   V + A   F+ M  R+E T++++IA     G    A+ ++E  
Sbjct: 258 DVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERD 317

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
               I        A+++  +  G + + +  FE++       P +  +  ++  Y + G+
Sbjct: 318 PVKSI----ACRTALITGLAQCGRIDDARILFEQIPE-----PIVVSWNALITGYMQNGM 368

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGA 590
           +N+AKE+  KMP+  T + WA ++  
Sbjct: 369 VNEAKELFDKMPFRNTIS-WAGMIAG 393


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 203/622 (32%), Positives = 329/622 (52%), Gaps = 47/622 (7%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           K+L   +Q HA  ++LG  +NP L  KL++ YA F +   +  + ++ + +    WN LI
Sbjct: 41  KSLKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLI 100

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW 207
           + +V++  Y EA   + QM  R +  D++T  ++ K C E+ D++ G+++H         
Sbjct: 101 NGFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHG-------- 152

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
                                 +        D +  N+++S Y+  G + E  +LF EM 
Sbjct: 153 ----------------------KSLKTGFVLDVIVANSLMSMYSKCGGFGECLKLFDEMP 190

Query: 268 EEGVEVNVITWNTIAGGCLRTG--NF-KGVLELLSRMRTQETYLDSVATVIGLGACS-HV 323
           E     NV +WN I  G   +G  NF K V   +  M+ +    D+      L  C+ H+
Sbjct: 191 ER----NVGSWNVILSGYADSGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLLTLCNGHM 246

Query: 324 GALKLGKEIHGSAVR----GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           G    G+E+HG  VR       G   ++   LI MYSR   +     +F     +++  W
Sbjct: 247 GKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRVDVGRRVFDRMECRNVYAW 306

Query: 380 NSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
            +M++G+      EE   LF EM  R GVEPN V++ S+LP C+ VA L   K+ H Y +
Sbjct: 307 TAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSLVSVLPACSAVAGLTGVKQIHGYAI 366

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVA 497
           R+  FN  + L N+L++MY++ G +  AK VF+  S RRD ++++S+I+GYG+ G+G  A
Sbjct: 367 RK-QFNNDVSLCNALIDMYSKCGSLDHAKQVFEFGSFRRDPISWSSMISGYGLHGKGEEA 425

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           + ++ +M +   KPD +T+V VLSACS +GLV EG   ++   + Y I P +E  AC+VD
Sbjct: 426 VFVYNKMLQLGNKPDMITIVGVLSACSRAGLVDEGLCIYKSAINKYRIKPTVEICACVVD 485

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           + GR+G L +A + I  MP  P+ ++W  ++ A  IH N+ + + A   L++  PEN   
Sbjct: 486 MLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSASIIHGNSEMQDLAYRFLVQLEPENPSN 545

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           YV ++N++A++  WD +++VRT M+D  + K PGC+W+   N    F   D  +  ++ I
Sbjct: 546 YVSLSNLHASSRRWDVVSEVRTMMKDRCLTKTPGCSWISINNTTHFFYAADKLHPCSKSI 605

Query: 678 YPLLGGLTELMKDAGYVVKEEF 699
           Y LLGGL  LMK  G  V  +F
Sbjct: 606 YELLGGLILLMK--GPAVSHDF 625


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 208/683 (30%), Positives = 339/683 (49%), Gaps = 84/683 (12%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           N  KA++ F ++       D    +FA  +     +  L   + L   A+  G E++ V+
Sbjct: 204 NHGKAWDIFCKMHREGLLPD--QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVI 261

Query: 112 VPKLVTFYA-SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
              ++  Y+   S+ + A    E+   R    W+ +I+     G    A+ VY++   + 
Sbjct: 262 GTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKS 321

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
           I                               AC         AL++   + G++D AR 
Sbjct: 322 I-------------------------------ACR-------TALITGLAQCGRIDDARI 343

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LF+++ E   VSWN +I+ Y   G+  EA +LF +M       N I+W  +  G  + G 
Sbjct: 344 LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR----NTISWAGMIAGYAQNGR 399

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLG-ACSHVGALKLGKEIHGSAVR-GCYGEYENVR 348
            +  L LL  +  +   L S++++  +  ACS++ AL+ G ++H  AV+ GC  ++ +  
Sbjct: 400 SEEALGLLQELH-RSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGC--QFNSFA 456

Query: 349 -NALITMYSRCKDLRHAYILFKMTAEKSIITWNSML------------------------ 383
            NALITMY +C+++ +A  +F     K I++WNS L                        
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDD 516

Query: 384 -------SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
                  S Y H + + E+   F+ MF     PN   +  +L +C  +   + G++ H  
Sbjct: 517 VSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTV 576

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            ++  M +E L++ N+L+ MY + G   +++ +FDLM  RD  T+ ++I GY   G GR 
Sbjct: 577 AIKLGMDSE-LIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGRE 634

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A+K+++ M    + P+ VT V +L+ACSH+GLV EG K F+ M+  YG+ P  EH+ACMV
Sbjct: 635 AIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMV 694

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GR G +  A++ I  MP  P + +W+ LLGAC+IH+N  IG+ AAEKL    P N+G
Sbjct: 695 DLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAG 754

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YV+++N+Y++ G W ++A+VR  M+  GV K PGC+W    +    F+  D  + Q +E
Sbjct: 755 NYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEE 814

Query: 677 IYPLLGGLTELMKDAGYVVKEEF 699
           I   L  L  L+K  GYV   EF
Sbjct: 815 IVATLEELYTLLKATGYVPDTEF 837



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 210/459 (45%), Gaps = 33/459 (7%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + WN +IS Y  +G    A  +Y  +    +R    T   +L   G +     GRV+
Sbjct: 63  RDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR----TGAILLSGYGRL-----GRVL 113

Query: 198 HS--CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            +    D   E +    NA++S Y + G + +ARRLFD M  RD  SWN+M++ Y     
Sbjct: 114 EARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQ 173

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             +A  LF +M E     N+++W  +  G  R  N     ++  +M  +    D      
Sbjct: 174 MVDARNLFEKMPER----NLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFAS 229

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD-LRHAYILFKMTAEK 374
            L A   +G L + + +   A++  +     +  A++ +YSR    L  A   F+   E+
Sbjct: 230 ALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER 289

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL-QHGKEF 433
           +  TW++M++  +H    + +  ++        +P    + SI    A +  L Q G+  
Sbjct: 290 NEYTWSTMIAALSHGGRIDAAIAVYER------DP----VKSIACRTALITGLAQCGRID 339

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
              IL   +    ++ WN+L+  Y ++G V EAK +FD M  R+ +++  +IAGY   G 
Sbjct: 340 DARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              AL L +E++++ + P   ++ ++  ACS+  + +E   Q   +    G   Q   FA
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNI-VALETGTQVHSLAVKVGC--QFNSFA 456

Query: 554 C--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           C  ++ +YG+   +  A+++ ++M  T     W + L A
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 177/386 (45%), Gaps = 38/386 (9%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           +A +   G+ G+V  AR +FD M  RD ++WN+MISAY   G+   A  L+         
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY--------- 88

Query: 273 VNVITWNTIAGGCLRTG-----NFKGVLELLSRMRTQETYLD--SVATVIGLGACSHVGA 325
                 + I+GG +RTG      +  +  +L   R  +  L+  +VA    +      G 
Sbjct: 89  ------DAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGD 142

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           + + + +  +        +    N+++T Y     +  A  LF+   E+++++W  M+SG
Sbjct: 143 ITMARRLFDAMPSRDVSSW----NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISG 198

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           Y  ++   ++  +F +M R G+ P+    AS L     + NL   +      L+   F  
Sbjct: 199 YGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTG-FER 257

Query: 446 HLLLWNSLVEMYARSGKVPE-AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            +++  +++ +Y+R   V + A   F+ M  R+E T++++IA     G    A+ ++E  
Sbjct: 258 DVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERD 317

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
               I        A+++  +  G + + +  FE++       P +  +  ++  Y + G+
Sbjct: 318 PVKSI----ACRTALITGLAQCGRIDDARILFEQIPE-----PIVVSWNALITGYMQNGM 368

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGA 590
           +N+AKE+  KMP+  T + WA ++  
Sbjct: 369 VNEAKELFDKMPFRNTIS-WAGMIAG 393


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 203/628 (32%), Positives = 329/628 (52%), Gaps = 61/628 (9%)

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +VPK+ +    FS          NSN+      N LI+   ++G   EA  V+++M  R 
Sbjct: 49  VVPKISSPVRDFS---------ANSNVARS---NWLITQLGKEGKIGEARQVFEEMPDR- 95

Query: 171 IRGDNFTYPSVLKA---CGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDV 227
              D  ++ +V+     CG + +       +  I     W+     ALVS Y ++ +++ 
Sbjct: 96  ---DVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWT-----ALVSGYVRWNRIEE 147

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           ARRLFD M  ++ +SWNTMI  YA KG   +A  LF  M E     NV++WNT+    ++
Sbjct: 148 ARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPER----NVVSWNTVITAFMQ 203

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY------ 341
                   EL +RM  ++  +     V GL     +   +L        VR         
Sbjct: 204 RRRVDEAQELFNRMPERDV-ISWTTMVAGLSKNGRIDDARL--LFDKMPVRNVVSWNTMI 260

Query: 342 -GEYENVR-------------------NALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            G  +N+R                   N +IT + +   L  A   F   + K+++TW +
Sbjct: 261 IGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTA 320

Query: 382 MLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           ++SG+     +EE+  +F EM   + V+PN  T  S+L  C+++A L  G++ H  I+ +
Sbjct: 321 VISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIH-QIISK 379

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFD--LMSRRDEVTYTSLIAGYGIQGEGRVAL 498
            ++ E   + ++L+ MY++ G++  A+ +FD   +  RD V++  +IA Y   G G  A+
Sbjct: 380 TVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAI 439

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LF+EM     +PD+VT +A+LSACSH+GLV EG K FE +     I  + +HF C+VDL
Sbjct: 440 SLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDL 499

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
           +GRAG L +A + I  +   P++++WA LL  C +H +  +G+  AEKLLET PEN+G Y
Sbjct: 500 FGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTY 559

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           ++++N+YA+TG W + A VR  M+D G++K PGC+W++ GN    F+V D S+ + + IY
Sbjct: 560 LVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFENIY 619

Query: 679 PLLGGLTELMKDAGYVVKEEFCSEEEIV 706
            LL  L   MK  G+ + E+   +  +V
Sbjct: 620 LLLHDLHTKMKKIGHTLYEDLTIDFNLV 647



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 130/495 (26%), Positives = 219/495 (44%), Gaps = 55/495 (11%)

Query: 32  NEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALA 91
           N ++ R N L T       G + +A + F  +       DVV  S+  +I    K   + 
Sbjct: 63  NSNVARSNWLIT--QLGKEGKIGEARQVFEEM----PDRDVV--SWTAVITGYIKCGMIE 114

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           + K L     A+   KN V    LV+ Y  ++    A  L +   ++  + WN +I  Y 
Sbjct: 115 EAKTLFDRNDAI---KNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYA 171

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV 211
           R G+  +AL +++ M  R +     ++ +V+ A  +   VD  +      +   E  +  
Sbjct: 172 RKGWIDQALDLFEXMPERNV----VSWNTVITAFMQRRRVDEAQ---ELFNRMPERDVIS 224

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
              +V+   K G++D AR LFDKM  R+ VSWNTMI  YA      EAF+LF +M E  +
Sbjct: 225 WTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPEREL 284

Query: 272 EV---------------------------NVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
                                        NV+TW  +  G ++ G  +  L++ S M+  
Sbjct: 285 SSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAA 344

Query: 305 ETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
                +  T +  LGACS + AL  G++IH    +  Y E  +V +ALI MYS+C +L  
Sbjct: 345 NNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELEL 404

Query: 364 AYILFK--MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
           A  +F       + +++WN M++ Y H     ++  LF EM   G  P+ VT  ++L  C
Sbjct: 405 ARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSAC 464

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS----RRD 477
           +    +  G +    ++R          +  LV+++ R+G++ EA   FD +     +  
Sbjct: 465 SHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEA---FDFIKGLEVKPS 521

Query: 478 EVTYTSLIAGYGIQG 492
              + +L+AG  + G
Sbjct: 522 ASVWAALLAGCNVHG 536


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 289/554 (52%), Gaps = 39/554 (7%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV-DFGRVVHSCID 202
           N LI    ++G   +A+ V  Q  S        TY  ++  CG    + D  RV    +D
Sbjct: 50  NQLIQSLCKEGKLKQAIRVLSQESS----PSQQTYELLILCCGHRSSLSDALRVHRHILD 105

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              +   F+   L+ MY   G VD AR++FDK  +R    WN +  A    G  +E   L
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           + +M   GVE +  T+  +   C+ +                               C+ 
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVAS------------------------------ECT- 194

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           V  L  GKEIH    R  Y  +  +   L+ MY+R   + +A  +F     +++++W++M
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAM 254

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVE--PNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           ++ Y     A E+   FREM R   +  PN VT+ S+L  CA +A L+ GK  H YILRR
Sbjct: 255 IACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR 314

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            + +  L + ++LV MY R GK+   + VFD M  RD V++ SLI+ YG+ G G+ A+++
Sbjct: 315 GL-DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQI 373

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           FEEM  N   P  VT V+VL ACSH GLV EG++ FE M   +GI PQ+EH+ACMVDL G
Sbjct: 374 FEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLG 433

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           RA  L++A +++  M   P   +W +LLG+C+IH N  + E A+ +L    P+N+G YVL
Sbjct: 434 RANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVL 493

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           +A++YA    WD++ +V+  +   G++K+PG  W++       F+  D  N   ++I+  
Sbjct: 494 LADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAF 553

Query: 681 LGGLTELMKDAGYV 694
           L  L E MK+ GY+
Sbjct: 554 LVKLAEDMKEKGYI 567



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 220/511 (43%), Gaps = 66/511 (12%)

Query: 21  FIPKKWKQP------INNEHI-----MRINLLETLKDFAGRGNLSKAFEAFTRIRITAAS 69
           F+P+   +P      +NN  I      +I+  + ++     G L +A      IR+ +  
Sbjct: 19  FLPRSPLKPPSCSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQA------IRVLSQE 72

Query: 70  HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
                 ++  +I CCG   +L+   ++H   +  G +++P L  KL+  Y+     + A 
Sbjct: 73  SSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYAR 132

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC---- 185
            + + +  R    WN L       G   E L +Y +M    +  D FTY  VLKAC    
Sbjct: 133 KVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASE 192

Query: 186 ---GEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
                +M    G+ +H+ +    +   +++   LV MY +FG VD A  +F  M  R+ V
Sbjct: 193 CTVNHLMK---GKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVV 249

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SW+ MI+ YA  G   EA + F EM  E                                
Sbjct: 250 SWSAMIACYAKNGKAFEALRTFREMMRE-------------------------------- 277

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
            T+++  +SV  V  L AC+ + AL+ GK IHG  +R        V +AL+TMY RC  L
Sbjct: 278 -TKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKL 336

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
                +F    ++ +++WNS++S Y      +++  +F EM  +G  P  VT  S+L  C
Sbjct: 337 EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE-AKSVFDLMSRRDEVT 480
           +    ++ GK     + R       +  +  +V++  R+ ++ E AK V D+ +      
Sbjct: 397 SHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456

Query: 481 YTSLIAGYGIQGE----GRVALKLFEEMNKN 507
           + SL+    I G      R + +LF    KN
Sbjct: 457 WGSLLGSCRIHGNVELAERASRRLFALEPKN 487


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 184/584 (31%), Positives = 303/584 (51%), Gaps = 38/584 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S  + +    + + L +GK++H  A+ LG+  + V+   +V+ YA       A     + 
Sbjct: 330 SVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSL 389

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W+  +S  V+ G+  EAL ++++MQ   ++ D     S++ AC E+     G+
Sbjct: 390 EGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGK 449

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ++H   I A     + V   LVSMY +      A  LF++M  +D               
Sbjct: 450 MMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKD--------------- 494

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                               V+ WNT+  G  + G+ +  LE+  R++      DS   V
Sbjct: 495 --------------------VVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMV 534

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE- 373
             L AC+ +  L LG   HG+ ++       +V+ ALI MY++C  L  A  LF +    
Sbjct: 535 SLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHV 594

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K  ++WN M++GY H  CA E+   F +M    V PN VT  +ILP  + ++ L+    F
Sbjct: 595 KDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAF 654

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  I+R   F    L+ NSL++MYA+SG++  ++  F  M  +  +++ ++++GY + G+
Sbjct: 655 HACIIRMG-FISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQ 713

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G VAL LF  M +  +  D V+ ++VLSAC H+GL+ EG+  F+ MT  + + P +EH+A
Sbjct: 714 GEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYA 773

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVDL G AGL ++   +I KMP  P + +W  LLGAC++H N  +GE A   LL+  P 
Sbjct: 774 CMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEPR 833

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDA 657
           N+ +Y++++++YA  G W    + R+ M D G++K PG +WV A
Sbjct: 834 NAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLKKNPGYSWVGA 877



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 213/468 (45%), Gaps = 53/468 (11%)

Query: 129 CFLVENSNIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
           C L  NS I  P  + WN LI  Y R   + EA+  Y+ M    +  D +T+  VLKAC 
Sbjct: 80  CTLAPNS-ITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACT 138

Query: 187 EMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
             +D   G  +H  I +   E  +F+   LV MY K G +D AR++FDKM  +D      
Sbjct: 139 GALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKD------ 192

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
                                        V +WN +  G  ++ N    LE+  RM+ +E
Sbjct: 193 -----------------------------VASWNAMISGLSQSSNPCEALEIFQRMQMEE 223

Query: 306 TYLDSVATVIGLG-ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                  +++ L  A S +  +   K IHG  VR C   +  V N+LI MYS+C +++ A
Sbjct: 224 GVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCV--FGVVSNSLIDMYSKCGEVKLA 281

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
           + +F     K  I+W +M++GY H  C  E   L  EM R  ++ N +++ + +      
Sbjct: 282 HQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATET 341

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
            +L+ GKE H Y L+  M ++ +++   +V MYA+ G++ +AK  F  +  RD V +++ 
Sbjct: 342 RDLEKGKEVHNYALQLGMTSD-IVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAF 400

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           ++     G    AL +F+EM    +KPD   + +++SAC+          +  +M   Y 
Sbjct: 401 LSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEI-----SSSRLGKMMHCYV 455

Query: 545 IFPQLEH----FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           I   +         +V +Y R      A  +  +M Y    A W TL+
Sbjct: 456 IKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVA-WNTLI 502



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 224/469 (47%), Gaps = 43/469 (9%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           ++  + W  +++ YV  G Y E L +  +M+ + I+ +  +  + + A  E  D++ G+ 
Sbjct: 290 VKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKE 349

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           VH+  +       + V   +VSMY K G++  A+  F  +  RD V W+  +SA    G 
Sbjct: 350 VHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGY 409

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EA  +F EMQ EG                              ++  +T L S+ +  
Sbjct: 410 PGEALSIFQEMQHEG------------------------------LKPDKTILSSLVS-- 437

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
              AC+ + + +LGK +H   ++   G   +V   L++MY+RCK   +A  LF     K 
Sbjct: 438 ---ACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKD 494

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++ WN++++G+T       +  +F  +  SGV+P+  T+ S+L  CA + +L  G  FH 
Sbjct: 495 VVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHG 554

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEG 494
            I++  + +E + +  +L++MYA+ G +  A+++F L    +DEV++  +IAGY   G  
Sbjct: 555 NIIKNGIESE-MHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCA 613

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             A+  F +M    ++P+ VT V +L A S+  ++ E    F       G          
Sbjct: 614 NEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMA-FHACIIRMGFISSTLIGNS 672

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           ++D+Y ++G L+ +++   +M    T + W  +L    +H   G GE A
Sbjct: 673 LIDMYAKSGQLSYSEKCFHEMENKGTIS-WNAMLSGYAMH---GQGEVA 717



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G  ++A   F ++++ +   ++V  +F  I+     +  L +    HAC I +G   + +
Sbjct: 611 GCANEAISTFNQMKLESVRPNLV--TFVTILPAVSYLSILREAMAFHACIIRMGFISSTL 668

Query: 111 LVPKLVTFYASFSL--YNNACFL-VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           +   L+  YA      Y+  CF  +EN   +  + WN ++S Y   G    AL ++  MQ
Sbjct: 669 IGNSLIDMYAKSGQLSYSEKCFHEMEN---KGTISWNAMLSGYAMHGQGEVALALFSLMQ 725

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQV 225
              +  D+ +Y SVL AC     +  GR +   +   H  E S+  +  +V + G  G  
Sbjct: 726 ETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLF 785

Query: 226 DVARRLFDKM-LERDAVSWNTMISA 249
           D    L DKM  E DA  W  ++ A
Sbjct: 786 DEVLCLIDKMPTEPDAQVWGALLGA 810



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 46/165 (27%)

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
           C +   ++ N  L+LWNSL+  Y+R     EA                            
Sbjct: 80  CTLAPNSITNPSLILWNSLIRAYSRLHLFQEA---------------------------- 111

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
              +K ++ M+   ++PD  T   VL AC+       G   F    +I+      E   C
Sbjct: 112 ---IKSYQTMSYMGLEPDKYTFTFVLKACT-------GALDFHEGVAIHQDIASRE-LEC 160

Query: 555 -------MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
                  +VD+Y + G L+ A+++  KMP    ++  A + G  Q
Sbjct: 161 DVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQ 205


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 190/636 (29%), Positives = 330/636 (51%), Gaps = 51/636 (8%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           +A +   C  + AL  G QLHA A+      +      +    A+  +Y     L +   
Sbjct: 280 YASVFRSCAGLSALKVGTQLHAHALKCDFGSD------ITVGTATLDMYAKCGSLADAQR 333

Query: 137 IRYPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM- 189
           I   LP      +N +I   VR+    EAL  ++ +    +  +  +      AC  +  
Sbjct: 334 IFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKG 393

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           D+D GR +HS  + +    ++ V N+++ MYGK   +  A  +FD+M  RDAVSWN +I+
Sbjct: 394 DLD-GRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIA 452

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
           A+   G  +E   LF  M    +E +  T+ ++                           
Sbjct: 453 AHEQNGNEEETLNLFASMLRLRMEPDQFTYGSV--------------------------- 485

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   L ACS   AL  G EIH   ++   G    V  ALI MY +C  +  A  + 
Sbjct: 486 --------LKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIH 537

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               ++++++WN++++G+T L  +E++   F EM +  V+P+  T A +L  CA +A++ 
Sbjct: 538 DRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVG 597

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GK+ H  I++  + ++ + + ++LV+MY++ G + ++  VF+    +D VT+ ++I GY
Sbjct: 598 LGKQIHGQIIKLELHSD-VYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGY 656

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G G  AL  FE M    ++P+H T V++L AC+H G + +G   F  M + YG+ PQ
Sbjct: 657 AQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQ 716

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           +EH++CM+D+ GR+G +++A ++I +MP+   + +W TLL  C+IH N  I E A   +L
Sbjct: 717 IEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAIL 776

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           +  PE+S   +L++N+YA  G W K++++R  MR   ++K PGC+W++  +    FLV +
Sbjct: 777 QLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAFLVGN 836

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
            ++ + +EIY +L  L + MK  GY+   +F  +EE
Sbjct: 837 KTHPRYEEIYKILSVLLDEMKWIGYIPDIDFLIDEE 872



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 142/603 (23%), Positives = 259/603 (42%), Gaps = 63/603 (10%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAI 101
           L  F   G   K+ + F  +     S +V  D  +FA ++  C  ++    G Q+H   +
Sbjct: 147 LSGFLQNGECRKSIDVFLDM---GRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIV 203

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
            +G  K+ V    L+  YA     +++  +     ++  + W+ +I+  V++  +   L 
Sbjct: 204 RMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLE 263

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYG 220
           ++K+MQ   I      Y SV ++C  +  +  G  +H+    C   S + V  A + MY 
Sbjct: 264 LFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYA 323

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G +  A+R+F+ + +     +N +I          EA Q F  + + G+  N I+ + 
Sbjct: 324 KCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSG 383

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
               C    + KG L+                                G+++H  +V+  
Sbjct: 384 AFSAC---ASIKGDLD--------------------------------GRQLHSLSVKST 408

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                 V N+++ MY +C+ L  A  +F     +  ++WN++++ +      EE+  LF 
Sbjct: 409 LRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFA 468

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M R  +EP+  T  S+L  C+    L  G E H  I++  +  +   +  +L++MY + 
Sbjct: 469 SMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDS-FVGGALIDMYCKC 527

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G + EAK + D + ++  V++ ++IAG+ +      A   F EM K  +KPD+ T   VL
Sbjct: 528 GMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVL 587

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHF------ACMVDLYGRAGLLNKAKEIITK 574
            AC++   V  G++       I+G   +LE        + +VD+Y + G +  +  +  K
Sbjct: 588 DACANLASVGLGKQ-------IHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEK 640

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAA---EKL-LETRPENSGYYVLIANMYAATGC 630
            P        A + G  Q     G+GE A    E++ LE    N   +V I    A  G 
Sbjct: 641 APNKDFVTWNAMICGYAQ----HGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGF 696

Query: 631 WDK 633
            DK
Sbjct: 697 IDK 699



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 141/620 (22%), Positives = 270/620 (43%), Gaps = 80/620 (12%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVV-----LDSFAHIIFCCGKVKALAQGKQLH 97
           +L+  A R   +K    FT   I+    +       + +F+HII  C    +L  GKQ H
Sbjct: 7   SLRLIASRILYNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAH 66

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIR------------------- 138
           A  I  G   +  +   L+  Y   S  N A  + E  + R                   
Sbjct: 67  ARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMN 126

Query: 139 ------YPLP------WNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKAC 185
                 Y  P      WN ++S ++++G   +++ V+  M +S  +  D  T+  VLKAC
Sbjct: 127 LANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKAC 186

Query: 186 GEMMDVDFGRVVHSCIDACHEW-SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
             + D   G  VH  I     +  +   +AL+ MY K  ++D + ++F ++  ++ V W+
Sbjct: 187 SVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWS 246

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            +I+            +LF EMQ+ G+ V+     +I     R+                
Sbjct: 247 AIIAGCVQNDEHILGLELFKEMQKVGIGVS----QSIYASVFRS---------------- 286

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                          C+ + ALK+G ++H  A++  +G    V  A + MY++C  L  A
Sbjct: 287 ---------------CAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADA 331

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F    + S+  +N+++ G    +   E+   F+ + +SG+  N ++++     CA +
Sbjct: 332 QRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASI 391

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
                G++ H   ++  +   ++ + NS+++MY +   + EA  +FD M RRD V++ ++
Sbjct: 392 KGDLDGRQLHSLSVKSTL-RSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAV 450

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           IA +   G     L LF  M + +++PD  T  +VL ACS    +  G +   R+    G
Sbjct: 451 IAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIK-SG 509

Query: 545 IFPQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602
           +   L+ F    ++D+Y + G++ +AK+I  ++      +  A + G   +  +     +
Sbjct: 510 L--GLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSF 567

Query: 603 AAEKL-LETRPENSGYYVLI 621
             E L +  +P+N  Y +++
Sbjct: 568 FYEMLKMSVKPDNFTYAIVL 587



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 1/230 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C   +AL  G ++H   I  GL  +  +   L+  Y    +   A  + +  
Sbjct: 481 TYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRI 540

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I+ +       +A   + +M    ++ DNFTY  VL AC  +  V  G+
Sbjct: 541 EQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGK 600

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  I      S +++ + LV MY K G +  +  +F+K   +D V+WN MI  YA  G
Sbjct: 601 QIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHG 660

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           L +EA   F  MQ E V  N  T+ +I   C   G     L   + M T+
Sbjct: 661 LGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTE 710



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 7/178 (3%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A ++  C  + ++  GKQ+H   I L L  +  +   LV  Y+      ++  + E +
Sbjct: 582 TYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKA 641

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I  Y + G   EAL  +++MQ   +R ++ T+ S+L+AC  M  +D G 
Sbjct: 642 PNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKG- 700

Query: 196 VVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMIS 248
            +H       E+ L      ++ ++ + G+ G++  A +L  +M  E DAV W T++S
Sbjct: 701 -LHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLS 757


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/629 (30%), Positives = 321/629 (51%), Gaps = 69/629 (10%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           ++  YA     ++A    E+   R  + WN++I+   + G   EAL +  +M  + +R D
Sbjct: 200 MLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLD 259

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           + TY S L AC  +  + +G+ +H+  I +  +   +V +AL+ +Y K G          
Sbjct: 260 STTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS--------- 310

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
                                 +KEA ++F  +Q+     N ++W  + GG L+   F  
Sbjct: 311 ----------------------FKEAKRVFNSLQDR----NSVSWTVLIGGSLQYECFSK 344

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
            +EL ++MR +   +D  A    +  C +   L LG+++H   ++  +     V N+LI+
Sbjct: 345 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLIS 404

Query: 354 MYSRCKDLRHAYILFKMTAEKSI-------------------------------ITWNSM 382
           +Y++C DL++A  +F   +E+ I                               ITWN+M
Sbjct: 405 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAM 464

Query: 383 LSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           L  Y      E+   ++  M  +  V P++VT  ++   CA +   + G +   + ++  
Sbjct: 465 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 524

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           +   ++ + N+ + MY++ G++ EA+ +FDL++ +D V++ ++I GY   G G+ A K F
Sbjct: 525 LI-LNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTF 583

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           ++M     KPD+++ VAVLS CSHSGLV EG+  F+ MT ++GI P LEHF+CMVDL GR
Sbjct: 584 DDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGR 643

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG L +AK++I KMP  PT+ +W  LL AC+IH N  + E AA+ + E    +SG Y+L+
Sbjct: 644 AGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLL 703

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           A +Y+  G  D  A+VR  MRD G++K PG +W++  N    F  DD S+ Q   I   +
Sbjct: 704 AKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKM 763

Query: 682 GGLTELMKDAGYVVKEEFCSEEEIVEEIG 710
             L E +   GYV  E   SE    E++ 
Sbjct: 764 DELMEKIAHLGYVRTESPRSEIHHSEKLA 792



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 221/494 (44%), Gaps = 37/494 (7%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           V  + A  +  CG   ALA  + LH   + +GL     L   L+  Y S    ++A  L+
Sbjct: 19  VTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLL 78

Query: 133 ENSNIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
             ++I+ P  +  N++++ Y + G  ++A  ++ +M  R +   N       +  G  M 
Sbjct: 79  R-ADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWM- 136

Query: 191 VDFGRVVHSC-IDACHEWS-----LF----------VHNALVSMYGKFGQVDVARRLFDK 234
                   SC    C E +     LF          V  ALV M+ + G VD A RLF +
Sbjct: 137 --------SCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQ 188

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           +        N+M++ YA       A + F +M E     +V++WN +     ++G  +  
Sbjct: 189 IERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER----DVVSWNMMIAALSQSGRVREA 244

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L L+  M  +   LDS      L AC+ + +L  GK++H   +R        V +ALI +
Sbjct: 245 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 304

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y++C   + A  +F    +++ ++W  ++ G    +C  +S  LF +M    +  +   +
Sbjct: 305 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 364

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           A+++  C    +L  G++ H   L+    N  +++ NSL+ +YA+ G +  A+ VF  MS
Sbjct: 365 ATLISGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 423

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            RD V++TS+I  Y   G    A + F+ M       + +T  A+L A    G   +G K
Sbjct: 424 ERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLK 479

Query: 535 QFERMTSIYGIFPQ 548
            +  M S   + P 
Sbjct: 480 MYSAMLSQKDVTPD 493



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 125/270 (46%), Gaps = 35/270 (12%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112
            SK+ E F ++R    + D    + A +I  C     L  G+QLH+  +  G  +  V+ 
Sbjct: 342 FSKSVELFNQMRAELMAIDQF--ALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVS 399

Query: 113 PKLVTFYASFSLYNNACFLVEN-------------------SNI------------RYPL 141
             L++ YA      NA F+  +                    NI            R  +
Sbjct: 400 NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAI 459

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG-RVVHS 199
            WN ++  Y++ G   + L +Y  M S++ +  D  TY ++ + C ++     G +++  
Sbjct: 460 TWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH 519

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            + A    ++ V NA ++MY K G++  A++LFD +  +D VSWN MI+ Y+  G+ K+A
Sbjct: 520 TVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQA 579

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            + F +M  +G + + I++  +  GC  +G
Sbjct: 580 AKTFDDMLSKGAKPDYISYVAVLSGCSHSG 609



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  + A   G Q+    +  GL  N  +    +T Y+     + A  L +  N +  + W
Sbjct: 504 CADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSW 563

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+ Y + G   +A   +  M S+  + D  +Y +VL  C     V  G++    +  
Sbjct: 564 NAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTR 623

Query: 204 CHEWS--LFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            H  S  L   + +V + G+ G +  A+ L DKM ++  A  W  ++SA
Sbjct: 624 VHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 672


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 197/605 (32%), Positives = 311/605 (51%), Gaps = 57/605 (9%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL-PWNLLISLYVRDGFYAEALCVYK 164
           E++ V    LV+ YA   +  +A  L + S+ R  +  W  L+S Y R G   EA  +++
Sbjct: 68  ERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQ 127

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC--IDACHEWSLFVHNALVSMYGKF 222
           +M  R +     ++ ++L+A         GR   +C   D          N L++M  + 
Sbjct: 128 RMPQRNV----VSWNTMLEAYAVA-----GRAGDACALFDRMPVRDAGSWNILLAMLVRS 178

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G VD AR LF +M ERD ++W TM+   A  G   EA  LF  M E     NV++WN + 
Sbjct: 179 GSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPER----NVVSWNAMI 234

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G  R       L+L ++M  ++           + +C                      
Sbjct: 235 SGYTRNHRLDEALDLFTKMPHRD-----------IASC---------------------- 261

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
                 N +IT + + KDL+ A  LF    E++++TW +M++GY     +E S  LFR M
Sbjct: 262 ------NIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGM 315

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             SG+ PN VT    L  C+ +A L  GK+ H  I + A F     + ++L+ +YA+ G+
Sbjct: 316 LMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTA-FQVDTFVGSALMNVYAKCGE 374

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           V  A+ +FDL   +D +++  +IA Y   G G  A+ L+E+M  N  +P+ VT V +LSA
Sbjct: 375 VGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSA 434

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS- 581
           CSHSGLV EG K FE M +   I  + EH+ C++DL  RAG L+ AK +I  +   P S 
Sbjct: 435 CSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASG 494

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           ++W+ LLG C  H N  IG  AA  L++  P+N+G Y L++N+YA+ G W + A++R+ M
Sbjct: 495 SVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEM 554

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCS 701
            + G++K PGC+W++  N    F+  D S+ ++  IY LL  +  +M+  G V  +    
Sbjct: 555 NNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHYMMRIVGTVPSDLVHV 614

Query: 702 EEEIV 706
           +EE++
Sbjct: 615 DEELM 619



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 44/238 (18%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C  +  L +GKQ+H        + +  +   L+  YA       A  L + S
Sbjct: 326 TFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLS 385

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG- 194
             +  + WN +I+ Y   G   EA+ +Y++MQ    R ++ TY  +L AC     VD G 
Sbjct: 386 REKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGL 445

Query: 195 RVVHSCIDACHEWSLFVHNA----LVSMYGKFGQVDVARRL--FDKMLERDAVSWNTMIS 248
           ++  S ++   + S+ V +     L+ +  + G++D A+RL  + K+       W+ ++ 
Sbjct: 446 KIFESMVN---DRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLG 502

Query: 249 A----------------------------------YASKGLWKEAFQLFVEMQEEGVE 272
                                              YAS G WKEA ++  EM   G++
Sbjct: 503 GCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLK 560


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 203/657 (30%), Positives = 329/657 (50%), Gaps = 42/657 (6%)

Query: 39  NLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFA--HIIFCCGKVKALAQGKQL 96
           NL+       G     +  EA  R+ +     D+V D FA   II  C     +  GKQL
Sbjct: 132 NLVSYTSVITGYSQNGQGAEAI-RLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQL 190

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           HA  I L    + +    L+  Y  F+  ++A  +     ++  + W+ +I+ + + GF 
Sbjct: 191 HAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFE 250

Query: 157 AEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNA 214
            EAL   K+M S  +   N + + S LKAC  ++  D+G  +H  CI +    +     +
Sbjct: 251 FEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCS 310

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L  MY + G ++ ARR+FD++   D  S                                
Sbjct: 311 LCDMYARCGFLNSARRVFDQIERPDTAS-------------------------------- 338

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
              WN I  G    G     + + S+MR+     D+++    L A +   AL  G +IH 
Sbjct: 339 ---WNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHS 395

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLDCAE 393
             ++  +     V N+L+TMY+ C DL   + LF+        ++WN++L+     +   
Sbjct: 396 YIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPV 455

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E   LF+ M  S  EP+++T+ ++L  C  +++L+ G + HCY L+  +  E  +  N L
Sbjct: 456 EMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFI-KNGL 514

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MYA+ G + +A+ +FD M  RD V++++LI GY   G G  AL LF+EM    I+P+H
Sbjct: 515 IDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNH 574

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VT V VL+ACSH GLV EG K +  M + +GI P  EH +C+VDL  RAG LN+A+  I 
Sbjct: 575 VTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFID 634

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
           +M   P   +W TLL AC+   N  + + AAE +L+  P NS  +VL+ +M+A++G W+ 
Sbjct: 635 EMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEN 694

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
            A +R+ M+   V+KIPG +W++  +    F  +D  + +  +IY +L  +   M D
Sbjct: 695 AALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQMLD 751



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 137/553 (24%), Positives = 257/553 (46%), Gaps = 47/553 (8%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A EAF   +   +S  + L ++  +I  C   ++LAQG+++H   +    + + +L   
Sbjct: 49  EALEAFDFAQ-KNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNH 107

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           +++ Y       +A  + +    R  + +  +I+ Y ++G  AEA+ +Y +M    +  D
Sbjct: 108 ILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPD 167

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFD 233
            F + S++KAC    DV  G+ +H+ +      S L   NAL++MY +F Q+  A R+F 
Sbjct: 168 QFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFY 227

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
            +  +D +SW+++I+ ++  G   EA     EM   G    V   N    G         
Sbjct: 228 GIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFG----VFHPNEYIFG--------- 274

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                       + L + ++++     S +  L +  E+ G+A+ GC         +L  
Sbjct: 275 ------------SSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGC---------SLCD 313

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY+RC  L  A  +F         +WN +++G  +   A+E+  +F +M  SG  P+ ++
Sbjct: 314 MYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAIS 373

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DL 472
           + S+L    +   L  G + H YI++   F   L + NSL+ MY     +    ++F D 
Sbjct: 374 LRSLLCAQTKPMALSQGMQIHSYIIKWG-FLADLTVCNSLLTMYTFCSDLYCCFNLFEDF 432

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVA-LKLFEEMNKNQIKPDHVTMVAVLSACSH-SGLVV 530
            +  D V++ +++    +Q E  V  L+LF+ M  ++ +PDH+TM  +L  C   S L +
Sbjct: 433 RNNADSVSWNTILTAC-LQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKL 491

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             Q     + +  G+ P+      ++D+Y + G L +A+ I   M      + W+TL+  
Sbjct: 492 GSQVHCYSLKT--GLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVS-WSTLIVG 548

Query: 591 CQIHRNTGIGEWA 603
              +  +G GE A
Sbjct: 549 ---YAQSGFGEEA 558



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 205/467 (43%), Gaps = 48/467 (10%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-----RIRGDNFTYPSVLKACGEMM 189
           S I+     N  I+   +  FY EAL  +   Q       R+R    TY S++ AC    
Sbjct: 26  STIKTEELMNDHINSLCKSNFYREALEAFDFAQKNSSFKIRLR----TYISLICACSSSR 81

Query: 190 DVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
            +  GR +H  I ++  ++   ++N ++SMYGK G +  AR +FD M ER+ VS+ ++I+
Sbjct: 82  SLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVIT 141

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            Y+  G   EA +L+++M +E +  +   + +I                           
Sbjct: 142 GYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSI--------------------------- 174

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   + AC+    + LGK++H   ++     +   +NALI MY R   +  A  +F
Sbjct: 175 --------IKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVF 226

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANL 427
                K +I+W+S+++G++ L    E+    +EM   GV  PN     S L  C+ +   
Sbjct: 227 YGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRP 286

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            +G + H   ++  +   + +   SL +MYAR G +  A+ VFD + R D  ++  +IAG
Sbjct: 287 DYGSQIHGLCIKSELAG-NAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAG 345

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
               G    A+ +F +M  +   PD +++ ++L A +    + +G  Q       +G   
Sbjct: 346 LANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGM-QIHSYIIKWGFLA 404

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            L     ++ +Y     L     +         S  W T+L AC  H
Sbjct: 405 DLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQH 451


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 213/653 (32%), Positives = 333/653 (50%), Gaps = 73/653 (11%)

Query: 73   VLDSFAHIIFCCGKVKALAQ-GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
             L S AH    C  V+   + GKQ+HA  +  G +        LVT YA     N+A  L
Sbjct: 435  TLVSVAH---ACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKAL 490

Query: 132  VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
                + +  + WN +IS   ++  + EAL     M    +R D  T  SVL AC ++  +
Sbjct: 491  FGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERL 550

Query: 192  DFGRVVHSCIDACHEWSL----FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
              GR +H C  A     L    FV  ALV MY    Q    R +FD ++ R    WN ++
Sbjct: 551  RIGREIH-CY-ALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALL 608

Query: 248  SAYASKGLWKEAFQLFVEM-QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
            + YA      +A +LFVEM  E     N  T+ ++   C+R   F               
Sbjct: 609  AGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSD------------- 655

Query: 307  YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                                   + IHG  V+  +G+ + V+NAL+ MYSR   +  +  
Sbjct: 656  ----------------------KEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKT 693

Query: 367  LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR----------------SGV--E 408
            +F    ++ I++WN+M++G       +++  L  EM R                 GV  +
Sbjct: 694  IFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFK 753

Query: 409  PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            PN VT+ ++LP CA +A L  GKE H Y +++ +  + + + ++LV+MYA+ G +  A  
Sbjct: 754  PNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMD-VAVGSALVDMYAKCGCLNLASR 812

Query: 469  VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM------NKNQIKPDHVTMVAVLSA 522
            VFD M  R+ +T+  LI  YG+ G+G  AL+LF  M      N+  I+P+ VT +A+ +A
Sbjct: 813  VFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAA 872

Query: 523  CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
            CSHSG+V EG   F  M + +G+ P+ +H+AC+VDL GR+G + +A E+I  MP      
Sbjct: 873  CSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKV 932

Query: 583  -MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
              W++LLGAC+IH++   GE AA+ L    P  + +YVL++N+Y++ G WD+   VR  M
Sbjct: 933  DAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKM 992

Query: 642  RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            +++GVRK PGC+W++ G+    FL  D S+ Q++E++  L  L++ M+  GYV
Sbjct: 993  KEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYV 1045



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 139/468 (29%), Positives = 224/468 (47%), Gaps = 57/468 (12%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R P  W  L+        + +A+  Y  M +     DNF +P+VLKA   + D+  G+ +
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 198 HSCI---DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           H+ +         S+ V N+LV+MYGK G +  AR++FD + +RD VSWN+MI+      
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFE 412

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
            W+ +  LF  M  E V+    T  ++A                                
Sbjct: 413 EWELSLHLFRLMLSENVDPTSFTLVSVAH------------------------------- 441

Query: 315 IGLGACSHV-GALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               ACSHV G ++LGK++H   +R G    Y N  NAL+TMY+R   +  A  LF +  
Sbjct: 442 ----ACSHVRGGVRLGKQVHAYTLRNGDLRTYTN--NALVTMYARLGRVNDAKALFGVFD 495

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            K +++WN+++S  +  D  EE+      M   GV P+ VT+AS+LP C+++  L+ G+E
Sbjct: 496 GKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGRE 555

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HCY LR     E+  +  +LV+MY    +  + + VFD + RR    + +L+AGY    
Sbjct: 556 IHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNE 615

Query: 493 EGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI-----F 546
               AL+LF EM ++++  P+  T  +VL AC          K F     I+G      F
Sbjct: 616 FDDQALRLFVEMISESEFCPNATTFASVLPACVRC-------KVFSDKEGIHGYIVKRGF 668

Query: 547 PQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
            + ++    ++D+Y R G +  +K I  +M      + W T++  C +
Sbjct: 669 GKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVS-WNTMITGCIV 715


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/624 (30%), Positives = 319/624 (51%), Gaps = 69/624 (11%)

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           YA     ++A    E+   R  + WN++I+   + G   EAL +  +M  + +R D+ TY
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 179 PSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
            S L AC  +  + +G+ +H+  I +  +   +V +AL+ +Y K G              
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS------------- 320

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
                             +KEA ++F  +Q+     N ++W  + GG L+   F   +EL
Sbjct: 321 ------------------FKEAKRVFNSLQDR----NSVSWTVLIGGSLQYECFSKSVEL 358

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
            ++MR +   +D  A    +  C +   L LG+++H   ++  +     V N+LI++Y++
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 358 CKDLRHAYILFKMTAEKSI-------------------------------ITWNSMLSGY 386
           C DL++A  +F   +E+ I                               ITWN+ML  Y
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAY 478

Query: 387 THLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
                 E+   ++  M  +  V P++VT  ++   CA +   + G +   + ++  +   
Sbjct: 479 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLI-L 537

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           ++ + N+ + MY++ G++ EA+ +FDL++ +D V++ ++I GY   G G+ A K F++M 
Sbjct: 538 NVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDML 597

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
               KPD+++ VAVLS CSHSGLV EG+  F+ MT ++GI P LEHF+CMVDL GRAG L
Sbjct: 598 SKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHL 657

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
            +AK++I KMP  PT+ +W  LL AC+IH N  + E AA+ + E    +SG Y+L+A +Y
Sbjct: 658 TEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIY 717

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           +  G  D  A+VR  MRD G++K PG +W++  N    F  DD S+ Q   I   +  L 
Sbjct: 718 SDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELM 777

Query: 686 ELMKDAGYVVKEEFCSEEEIVEEI 709
           E +   GYV  E   SE    E++
Sbjct: 778 EKIAHLGYVRTESPRSEIHHSEKL 801



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/515 (25%), Positives = 228/515 (44%), Gaps = 24/515 (4%)

Query: 40  LLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVL-DSFAHIIFCCGKVKALAQGKQLHA 98
           L + L+    RG L+ A     R+     +  V L ++  H    CG   AL+  ++L  
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCG---ALSDARRLLR 63

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
             I    E N +    ++  YA     ++A  L +    R    WN L+S Y +   + +
Sbjct: 64  ADIK---EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLD 120

Query: 159 ALCVYKQMQSRRIRGDN----FTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHN 213
            L  +  M      GD+    FT+  V+K+CG +   +    +         W    V  
Sbjct: 121 GLETFVSMHRS---GDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVET 177

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           ALV M+ + G VD A RLF ++        N+M++ YA       A + F +M E     
Sbjct: 178 ALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER---- 233

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           +V++WN +     ++G  +  L L+  M  +   LDS      L AC+ + +L  GK++H
Sbjct: 234 DVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH 293

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              +R        V +ALI +Y++C   + A  +F    +++ ++W  ++ G    +C  
Sbjct: 294 AKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFS 353

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           +S  LF +M    +  +   +A+++  C    +L  G++ H   L+    N  +++ NSL
Sbjct: 354 KSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSL 412

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + +YA+ G +  A+ VF  MS RD V++TS+I  Y   G    A + F+ M       + 
Sbjct: 413 ISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NA 468

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           +T  A+L A    G   +G K +  M S   + P 
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 125/270 (46%), Gaps = 35/270 (12%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112
            SK+ E F ++R    + D    + A +I  C     L  G+QLH+  +  G  +  V+ 
Sbjct: 352 FSKSVELFNQMRAELMAIDQF--ALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVS 409

Query: 113 PKLVTFYASFSLYNNACFLVEN-------------------SNI------------RYPL 141
             L++ YA      NA F+  +                    NI            R  +
Sbjct: 410 NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAI 469

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG-RVVHS 199
            WN ++  Y++ G   + L +Y  M S++ +  D  TY ++ + C ++     G +++  
Sbjct: 470 TWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH 529

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            + A    ++ V NA ++MY K G++  A++LFD +  +D VSWN MI+ Y+  G+ K+A
Sbjct: 530 TVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQA 589

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            + F +M  +G + + I++  +  GC  +G
Sbjct: 590 AKTFDDMLSKGAKPDYISYVAVLSGCSHSG 619



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  + A   G Q+    +  GL  N  +    +T Y+     + A  L +  N +  + W
Sbjct: 514 CADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSW 573

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+ Y + G   +A   +  M S+  + D  +Y +VL  C     V  G++    +  
Sbjct: 574 NAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTR 633

Query: 204 CHEWS--LFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            H  S  L   + +V + G+ G +  A+ L DKM ++  A  W  ++SA
Sbjct: 634 VHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 682


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 191/580 (32%), Positives = 320/580 (55%), Gaps = 21/580 (3%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL----YNNACFLVENSNIRYP--L 141
           K+++Q KQ+ A     GL+++  ++ KL+ F    SL    Y N  F    ++I +P   
Sbjct: 19  KSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIF----NHIHHPSLF 74

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-C 200
            +NL+I  +V+ G    A+ +++Q++ R +  DN+TYP VLK  G + +V  G  +H+  
Sbjct: 75  IYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFV 134

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           +    E+  +V N+L+ MY + G V+   ++F++M ERDAVSWN MIS Y     ++EA 
Sbjct: 135 VKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAV 194

Query: 261 QLFVEMQEEGVE-VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++  MQ E  E  N  T  +    C    N +   E+   +   E  L  +     L  
Sbjct: 195 DVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYI-ANELDLTPIMGNALLDM 253

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
               G + + +EI  + +     +  N   +++T Y  C  L  A  LF+ +  + ++ W
Sbjct: 254 YCKCGCVSVAREIFDAMIV----KNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLW 309

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
            +M++GY   +  E++  LF EM   GVEP+   + ++L  CA++  L+ GK  H YI  
Sbjct: 310 TAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDE 369

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             +     ++  +L+EMYA+ G + ++  +F+ +   D  ++TS+I G  + G+   AL+
Sbjct: 370 NRI-KMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALE 428

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           LFE M    +KPD +T VAVLSAC H+GLV EG+K F  M+SIY I P LEH+ C +DL 
Sbjct: 429 LFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLL 488

Query: 560 GRAGLLNKAKEIITKMPYTPTS---AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           GRAGLL +A+E++ K+P         ++  LL AC+ + N  +GE  A  L + +  +S 
Sbjct: 489 GRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSS 548

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
            + L+A++YA+   W+ + KVR+ M+DLG++K+PG + ++
Sbjct: 549 LHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIE 588



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 198/427 (46%), Gaps = 7/427 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K F  RG+L  A   F ++R      D    ++ +++   G +  + +G+++HA  +  
Sbjct: 80  IKAFVKRGSLRSAISLFQQLRERGVWPDNY--TYPYVLKGIGCIGEVREGEKIHAFVVKT 137

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE +P +   L+  YA   L      + E    R  + WN++IS YVR   + EA+ VY
Sbjct: 138 GLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVY 197

Query: 164 KQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222
           ++MQ       N  T  S L AC  + +++ G+ +H  I    + +  + NAL+ MY K 
Sbjct: 198 RRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCKC 257

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G V VAR +FD M+ ++   W +M++ Y   G   +A  LF    E     +V+ W  + 
Sbjct: 258 GCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLF----ERSPSRDVVLWTAMI 313

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G ++  +F+  + L   M+ +    D    V  L  C+ +GAL+ GK IH         
Sbjct: 314 NGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIK 373

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V  ALI MY++C  +  +  +F    +    +W S++ G        E+  LF  M
Sbjct: 374 MDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAM 433

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
              G++P+ +T  ++L  C     ++ G++    +        +L  +   +++  R+G 
Sbjct: 434 QTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGL 493

Query: 463 VPEAKSV 469
           + EA+ +
Sbjct: 494 LQEAEEL 500


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 191/621 (30%), Positives = 325/621 (52%), Gaps = 22/621 (3%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           GKQLHA  +   +  +  L  KL++FY+      +A  +      +    WN L   Y  
Sbjct: 22  GKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTL 81

Query: 153 DGFYAEALCVYKQM---QSRRIRGDNFTYPSVLKACGEMM-DVDFGRVVHSCI-DACHEW 207
              + + L ++  +    S  ++ D FT    LKA   +  +    + VHS I     E+
Sbjct: 82  HNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEY 141

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF-VEM 266
            +FV NAL++ Y +  ++ +AR +FD+M ERD VSWN M++ Y+  G ++E  +LF V +
Sbjct: 142 DIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVML 201

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
               V+ N +T  ++   C ++ +    +E+   +   +  +D       +G  +  G L
Sbjct: 202 SSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGIL 261

Query: 327 KLGKEI-----HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
              +E+         +  C         ++I+ Y     +  A  LF+      + TWN+
Sbjct: 262 DYARELFEEMPEKDGITYC---------SMISGYMVHGFVNQAMDLFREQERPRLPTWNA 312

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++SG    +  E +  +FR M   G  PN VT+ASILP+ +  + L+ GKE H Y +R  
Sbjct: 313 VISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNT 372

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            ++ ++ +  ++++ YA+ G +  A+ VFD +  R  + +TS+I+ Y + G+  VAL LF
Sbjct: 373 -YDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLF 431

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
            EM  N I+PD VT  +VL+AC+HSG + E  K F  +   YGI P +EH+ACMV +  R
Sbjct: 432 YEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSR 491

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG L+ A E I+KMP  PT+ +W  LL    +  +  +G++  ++L E  PEN+G YV++
Sbjct: 492 AGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIM 551

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           AN+Y+ +G W     +R  M+++ ++KIPG +W++       F    +S V+  E+Y +L
Sbjct: 552 ANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETSGGMQRFCXRHSS-VRTPEVYGML 610

Query: 682 GGLTELMKDAGYVVKEEFCSE 702
            GL  L+K+ G +++ E   E
Sbjct: 611 EGLLGLVKEEGIILQHEIDVE 631



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 134/262 (51%), Gaps = 7/262 (2%)

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+     ++GK++H   V         + + LI+ YS+   +R AY +F     K+I +W
Sbjct: 13  CTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSW 72

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSG---VEPNYVTIA-SILPLCARVANLQHGKEFHC 435
           N++   YT  +   +   LF  +  S    V+P+  T+  S+  L +  +N    KE H 
Sbjct: 73  NALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHS 132

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           +ILRR +    + + N+L+  Y+R  ++  A+ +FD M  RD V++ +++AGY   G   
Sbjct: 133 FILRRGL-EYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYE 191

Query: 496 VALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
              +LF  M +  ++KP+ +T V+VL AC+ S  +  G  +  R  +   I   +  +  
Sbjct: 192 ECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFG-IEVHRFVNESQIKMDVSLWNA 250

Query: 555 MVDLYGRAGLLNKAKEIITKMP 576
           ++ LY + G+L+ A+E+  +MP
Sbjct: 251 VIGLYAKCGILDYARELFEEMP 272



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/381 (19%), Positives = 149/381 (39%), Gaps = 73/381 (19%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C +   L  G ++H       ++ +  L   ++  YA   + + A  L E    + 
Sbjct: 216 VLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKD 275

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQ-------------------------------MQS 168
            + +  +IS Y+  GF  +A+ ++++                               MQS
Sbjct: 276 GITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQS 335

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
              R +  T  S+L        +  G+ +H   I   ++ +++V  A++  Y K G +  
Sbjct: 336 HGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHG 395

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A+ +FD++  R  ++W ++ISAYA  G    A  LF EM   G++ + +T+ ++   C  
Sbjct: 396 AQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAH 455

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
           +G      ++ + +  +      +  ++   AC                           
Sbjct: 456 SGELDEAWKIFNVLLPEY----GIQPLVEHYAC--------------------------- 484

Query: 348 RNALITMYSRCKDLRHAY-ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
              ++ + SR   L  A   + KM  E +   W ++L+G +     E   ++F  +F   
Sbjct: 485 ---MVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFE-- 539

Query: 407 VEP----NYVTIASILPLCAR 423
           +EP    NYV +A++     R
Sbjct: 540 IEPENTGNYVIMANLYSQSGR 560



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 6/210 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A I+        L  GK++H  AI    ++N  +   ++  YA     + A  + +  
Sbjct: 344 TLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQI 403

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG- 194
             R  + W  +IS Y   G    AL ++ +M +  I+ D  T+ SVL AC    ++D   
Sbjct: 404 KGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAW 463

Query: 195 RVVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYAS 252
           ++ +  +       L  H A +V +  + G++  A     KM LE  A  W  +++  + 
Sbjct: 464 KIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASV 523

Query: 253 KG---LWKEAFQLFVEMQEEGVEVNVITWN 279
            G   L K  F    E++ E     VI  N
Sbjct: 524 AGDVELGKYVFDRLFEIEPENTGNYVIMAN 553


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/436 (38%), Positives = 259/436 (59%), Gaps = 5/436 (1%)

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A Q+F ++Q      N+ TWNT+  G   + N    LEL  +M       D+      L 
Sbjct: 93  AHQIFSQIQNP----NIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLK 148

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           A + +  ++ G+++H  A+R  +     V+N L+ MY+ C     A+ LF++ AE++++T
Sbjct: 149 AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 208

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WNS+++GY       E+  LFREM   GVEP+  T+ S+L  CA +  L  G+  H Y++
Sbjct: 209 WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 268

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +  + + +L   N+L+++YA+ G + +A  VFD M  +  V++TSLI G  + G G+ AL
Sbjct: 269 KVGL-DGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEAL 327

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LF+E+ +  + P  +T V VL ACSH G+V EG   F+RM   YGI P++EH+ CMVDL
Sbjct: 328 ELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDL 387

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAGL+ +A E I  MP  P + +W TLLGAC IH +  +GE A  +LL+  P++SG Y
Sbjct: 388 LGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDY 447

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+YA+   W  + KVR  M   GV+K PG + V+  N    F++ D S+ Q +EIY
Sbjct: 448 VLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIY 507

Query: 679 PLLGGLTELMKDAGYV 694
             L  +T+L+K  GYV
Sbjct: 508 VKLAEITKLLKLEGYV 523



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 196/435 (45%), Gaps = 47/435 (10%)

Query: 94  KQLHACAIALGLE-KNP----VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           +Q+HA +I  G+   NP     L+  L++F +  S  +     ++N NI     WN +I 
Sbjct: 57  RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNI---FTWNTMIR 113

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
            Y        AL +Y+QM    I  D  TYP +LKA  ++MDV  G  VHS  I    E 
Sbjct: 114 GYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFES 173

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            +FV N LV MY   G  + A +LF+ M ER+ V+WN++I+ YA  G   EA  LF EM 
Sbjct: 174 LVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMG 233

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
             GVE                                    D    V  L AC+ +GAL 
Sbjct: 234 LRGVEP-----------------------------------DGFTMVSLLSACAELGALA 258

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
           LG+  H   V+       +  NAL+ +Y++C  +R A+ +F    EKS+++W S++ G  
Sbjct: 259 LGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLA 318

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                +E+  LF+E+ R G+ P+ +T   +L  C+    +  G ++   +         +
Sbjct: 319 VNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKI 378

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
             +  +V++  R+G V +A      M  + + V + +L+    I G   +AL        
Sbjct: 379 EHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH--LALGEVARAQL 436

Query: 507 NQIKPDHVTMVAVLS 521
            Q++P H     +LS
Sbjct: 437 LQLEPKHSGDYVLLS 451



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 6/304 (1%)

Query: 2   PPSSSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFT 61
           P     LI   LS      +  + + Q I N +I   N +  ++ +A   N   A E + 
Sbjct: 73  PDMGKYLIFTLLSFCSPMSYAHQIFSQ-IQNPNIFTWNTM--IRGYAESENPMPALELYR 129

Query: 62  RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS 121
           ++ ++    D    ++  ++    K+  + +G+++H+ AI  G E    +   LV  YA+
Sbjct: 130 QMHVSCIEPDT--HTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAA 187

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
                +A  L E    R  + WN +I+ Y  +G   EAL ++++M  R +  D FT  S+
Sbjct: 188 CGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSL 247

Query: 182 LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           L AC E+  +  GR  H   +    + +L   NAL+ +Y K G +  A ++FD+M E+  
Sbjct: 248 LSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSV 307

Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
           VSW ++I   A  G  KEA +LF E++ +G+  + IT+  +   C   G      +   R
Sbjct: 308 VSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKR 367

Query: 301 MRTQ 304
           M+ +
Sbjct: 368 MKEE 371


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 206/671 (30%), Positives = 338/671 (50%), Gaps = 53/671 (7%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHA-CAIA 102
           L  +A  G+   A + + R+ +    + VV   +  ++  C  ++AL +GK +H+  +  
Sbjct: 96  LTAYAQNGHYRAALDLYKRMDLQP--NPVV---YTTVLGACASIEALEEGKAIHSRISGT 150

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYPLPWNLLISLYVRDGFYAEALC 161
            GL+ + +L   L+T YA      +A  L E  S  R    WN +I+ Y + G + EA+ 
Sbjct: 151 KGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIR 210

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYG 220
           +Y+ M    +     T+ SVL AC  +  +D GR +H+ I +   E  L + NAL++MY 
Sbjct: 211 LYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYA 267

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           +   +D A ++F ++  RD VSW+ MI+A+A   L+ EA + + +MQ EGV  N  T+ +
Sbjct: 268 RCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFAS 327

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +                                   L AC+ VG L+ G+ +H   +   
Sbjct: 328 V-----------------------------------LLACASVGDLRAGRAVHDQILGNG 352

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           Y        AL+ +Y+    L  A  LF     +    W  ++ GY+          L+R
Sbjct: 353 YKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYR 412

Query: 401 EMFRSGVEPNYVTIAS-ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           EM  +   P    I S ++  CA +      ++ H  I    M ++  +L  SLV MY+R
Sbjct: 413 EMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISD-FVLATSLVNMYSR 471

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  A+ VFD MS RD + +T+LIAGY   GE  +AL L++EM     +P  +T + V
Sbjct: 472 WGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVV 531

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           L ACSH+GL  +G++ F  + S Y + P + H++C++DL  RAG L+ A+E+I  MP  P
Sbjct: 532 LYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEP 591

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
               W++LLGA +IH++      AA ++ +  P +   YVL++N++A TG    +A VR 
Sbjct: 592 NDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRN 651

Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            M   GV+K  G +W++  +    F V D S+ + QEI+  L  L+  +K+AGYV +   
Sbjct: 652 TMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPE--- 708

Query: 700 CSEEEIVEEIG 710
              EE++ ++G
Sbjct: 709 --SEEVLHDVG 717



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 153/532 (28%), Positives = 259/532 (48%), Gaps = 51/532 (9%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
            DS  H      + + L   +Q+H   I+     N  L  ++V  Y       +A    +
Sbjct: 24  FDSSGHYRDALRQCQDLESVRQIHD-RISGAASANVFLGNEIVRAYGKCGSVASARVAFD 82

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
               +    W  +++ Y ++G Y  AL +YK+M    ++ +   Y +VL AC  +  ++ 
Sbjct: 83  AIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGACASIEALEE 139

Query: 194 GRVVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKMLERDAV-SWNTMISAY 250
           G+ +HS I       L V   N+L++MY K G ++ A+RLF++M  R +V SWN MI+AY
Sbjct: 140 GKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAY 199

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           A  G ++EA +L+ +M    VE +V T+ ++                             
Sbjct: 200 AQSGHFEEAIRLYEDMD---VEPSVRTFTSV----------------------------- 227

Query: 311 VATVIGLGACSHVGALKLGKEIHG-SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
                 L ACS++G L  G++IH   + RG   +  +++NAL+TMY+RCK L  A  +F+
Sbjct: 228 ------LSACSNLGLLDQGRKIHALISSRGTELDL-SLQNALLTMYARCKCLDDAAKIFQ 280

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
               + +++W++M++ +   D  +E+   + +M   GV PNY T AS+L  CA V +L+ 
Sbjct: 281 RLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRA 340

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G+  H  IL    +   L+   +LV++Y   G + EA+S+FD +  RDE  +T LI GY 
Sbjct: 341 GRAVHDQILGNG-YKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYS 399

Query: 490 IQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            QG     L+L+ EM N  ++    +    V+SAC+  G   + ++    + +  G+   
Sbjct: 400 KQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD-GMISD 458

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
                 +V++Y R G L  A+++  KM    T A W TL+     H   G+ 
Sbjct: 459 FVLATSLVNMYSRWGNLESARQVFDKMSSRDTLA-WTTLIAGYAKHGEHGLA 509



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/473 (27%), Positives = 223/473 (47%), Gaps = 58/473 (12%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           Y   L+ C ++  V   R +H  I      ++F+ N +V  YGK G V  AR  FD +  
Sbjct: 30  YRDALRQCQDLESV---RQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIAR 86

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           ++  SW +M++AYA  G ++ A  L+  M    ++ N + + T+                
Sbjct: 87  KNDYSWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTV---------------- 127

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNALITMY 355
                              LGAC+ + AL+ GK IH S + G  G   +V   N+L+TMY
Sbjct: 128 -------------------LGACASIEALEEGKAIH-SRISGTKGLKLDVILENSLLTMY 167

Query: 356 SRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           ++C  L  A  LF +M+  +S+ +WN+M++ Y      EE+  L+ +M    VEP+  T 
Sbjct: 168 AKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTF 224

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
            S+L  C+ +  L  G++ H  I  R      L L N+L+ MYAR   + +A  +F  + 
Sbjct: 225 TSVLSACSNLGLLDQGRKIHALISSRGT-ELDLSLQNALLTMYARCKCLDDAAKIFQRLP 283

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
           RRD V+++++IA +        A++ + +M    ++P++ T  +VL AC+  G +  G+ 
Sbjct: 284 RRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRA 343

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG--ACQ 592
             +++    G    L +   +VDLY   G L++A+ +  ++       +W  L+G  + Q
Sbjct: 344 VHDQILG-NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-NRDEGLWTVLIGGYSKQ 401

Query: 593 IHRNTGIGEWAAEKLLETR-PENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
            HR TG+ E   E    T+ P     Y  + +  A+ G +   A  R    D+
Sbjct: 402 GHR-TGVLELYREMKNTTKVPATKIIYSCVISACASLGAF---ADARQAHSDI 450


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/592 (32%), Positives = 315/592 (53%), Gaps = 39/592 (6%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +K+ +L   L+  Y    L   A  L +    R  + W  +I+ Y    + + A   + +
Sbjct: 42  KKHHILATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHE 101

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQ 224
           M  +    + FT  SVLK+C  M  + +G +VH  +     E SL+V NAL++MY     
Sbjct: 102 MFKQGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMY----- 156

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
                          A    TM          + AF +F +++ +    N +TW T+  G
Sbjct: 157 ---------------ATCSVTM----------EAAFLIFRDIKVK----NDVTWTTLITG 187

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
               G+  G L++  +M  +   +      I + A + + ++  GK+IH S V+  +   
Sbjct: 188 FTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRGFQSN 247

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V N+++  Y RC  L  A   F    +K +ITWN+++S     D + E+  +F+    
Sbjct: 248 LPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISELERSD-SSEALLMFQRFES 306

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G  PN  T  S++  CA +A L  G++ H  I RR  FN+++ L N+L++MYA+ G +P
Sbjct: 307 QGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRG-FNKNVELANALIDMYAKCGDIP 365

Query: 465 EAKSVF-DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           +++ VF ++  RR+ V++TS++ GYG  G G  A++LF++M  + I+PD +  +AVLSAC
Sbjct: 366 DSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSAC 425

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
            H+GLV +G K F  M S YGI P  + + C+VDL GRAG + +A E++ +MP+ P  + 
Sbjct: 426 RHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDEST 485

Query: 584 WATLLGACQIHRNTG-IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           W  +LGAC+ H++TG I   AA+K++E +P   G YV+++ +YAA G W + A+VR  MR
Sbjct: 486 WGAILGACKAHKHTGLISRLAAKKVMELKPRMVGTYVMLSYIYAAEGKWVEFARVRKMMR 545

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            +G +K  G +W++  N    F V D     A  +Y +LG L E  K+AGYV
Sbjct: 546 MMGNKKEAGMSWIEVENQVFSFAVSDKMCPNASSVYSVLGLLIEETKEAGYV 597



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 193/416 (46%), Gaps = 40/416 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-EN 134
           + + ++  C  +K LA G  +H   + LG+E +  +   L+  YA+ S+   A FL+  +
Sbjct: 113 TLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRD 172

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             ++  + W  LI+ +   G     L +YKQM         +     ++A   +  V  G
Sbjct: 173 IKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTTG 232

Query: 195 RVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + +H S +    + +L V N+++  Y + G +  A+R F +M ++D ++WNT+IS    +
Sbjct: 233 KQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISEL-ER 291

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
               EA  +F   + +G   N  T+ ++                                
Sbjct: 292 SDSSEALLMFQRFESQGFVPNCYTFTSL-------------------------------- 319

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTA 372
              + AC+++ AL  G+++HG   R  + +   + NALI MY++C D+  +  +F ++  
Sbjct: 320 ---VAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEE 376

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            +++++W SM+ GY       E+  LF +M  SG+ P+ +   ++L  C     ++ G +
Sbjct: 377 RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK 436

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
           +   +      N    ++N +V++  R+GK+ EA  + + M  + DE T+ +++  
Sbjct: 437 YFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGA 492


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 178/611 (29%), Positives = 311/611 (50%), Gaps = 41/611 (6%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISL 149
           Q K +HA  + L L+++  L+  ++     F   N +  +   S ++ P    WN +I  
Sbjct: 31  QLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVF--SQVKEPNIFLWNTMIRG 88

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWS 208
            V    + +A+ +Y  M+      +NFT P VLKAC   +DV  G  +HS  + A ++  
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +FV  +L+S+Y K    D A ++FD + ++                              
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDK------------------------------ 178

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                NV++W  I  G + +G+F+  +    ++       DS + V  L AC+ +G    
Sbjct: 179 -----NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTS 233

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+ I         G    V  +L+ MY +C +L  A ++F    EK I++W++M+ GY  
Sbjct: 234 GEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAF 293

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               +++  LF +M    ++P+  T+  +L  CA +  L  G  +   ++ R  F  + +
Sbjct: 294 NGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGI-WASSLMDRNEFLSNPV 352

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           L  +L++MY++ G V +A  +F  M R+D V + +++ G  + G  +    LF  + K+ 
Sbjct: 353 LGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHG 412

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           I+PD  T + +L  C+H G V EG++ F  M  ++ + P +EH+ CMVDL GRAGLLN+A
Sbjct: 413 IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEA 472

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
            ++I  MP  P + +W  LLG C++H++T + E   +KL+E  P NSG YV ++N+Y+  
Sbjct: 473 HQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGN 532

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
             W++  K+R+ M++  ++KI  C+W++   +   FLV D S+  +++IY  L  L   +
Sbjct: 533 HRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGREL 592

Query: 689 KDAGYVVKEEF 699
           K  G+V   EF
Sbjct: 593 KAVGHVPTTEF 603



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 194/427 (45%), Gaps = 37/427 (8%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C +   +  G ++H+  +  G + +  +   L++ Y     +++A  + ++   + 
Sbjct: 120 VLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN 179

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  +I+ Y+  G + EA+  +K++    ++ D+F+   VL AC  + D   G  +  
Sbjct: 180 VVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR 239

Query: 200 CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I D+    ++FV  +L+ MY K G ++ A  +F  M E+D VSW+TMI  YA  GL ++
Sbjct: 240 YISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQ 299

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  LF +MQ E ++ +  T               GVL                       
Sbjct: 300 ALDLFFQMQSENLKPDCYT-------------MVGVLS---------------------- 324

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ +GAL LG        R  +     +  ALI MYS+C  +  A+ +F     K  + 
Sbjct: 325 ACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVV 384

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M+ G +    A+    LF  + + G+ P+  T   +L  C     +  G++F   + 
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVA 497
           R       +  +  +V++  R+G + EA  + + M  + + V + +L+ G  +  +  +A
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 498 LKLFEEM 504
            ++ +++
Sbjct: 505 EQVLKKL 511


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 196/631 (31%), Positives = 326/631 (51%), Gaps = 43/631 (6%)

Query: 79  HIIFCCGKVKALAQGKQLHACAIALGLE-KNPVLVPKLVTFYASFSLYNNACFLVENSNI 137
           H++  C   K  A   Q+HA  I  GL   N      ++  YA      +A  L +    
Sbjct: 12  HLLLAC---KDEAPVTQIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQ 68

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-RV 196
           R    WN +I  Y R     E L +Y QM +   + D+ T+   +KA   + D++ G R+
Sbjct: 69  RGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERI 128

Query: 197 VHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
               +D  +   +FV ++++++Y K G++D A+ +FDKM++RD                 
Sbjct: 129 WRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRD----------------- 171

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
                             V+ W T+  G ++ GN    +++  RMR +    D V  +  
Sbjct: 172 ------------------VVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGL 213

Query: 317 LGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
           + AC+++G LKLG  +HG AVR     +   ++ +L+ MY++  DL  A  +F+    K+
Sbjct: 214 VQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKN 273

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
            ++W +++SG+     AE +  L  EM     +P+   + S L  C++V +L+ GK  H 
Sbjct: 274 AVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHG 333

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           YI+RR  F   L+L  +L++MYA+ G +  A ++FD +  RD + + ++IA YGI G+G+
Sbjct: 334 YIVRRLGFE--LVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGK 391

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
             L LF +M +  I PDH T  ++LSA SHSG V  GQ  F  M +   I P  +H+ACM
Sbjct: 392 EVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACM 451

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VDL+ RAG + +A ++I  M   P  A+W  LL  C  +RN   GE AA+K+L+  P++ 
Sbjct: 452 VDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPDDL 511

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G Y L++N ++    WD+++ +R  M++ G++K+PG + V+       FLV+D ++ Q +
Sbjct: 512 GIYALVSNFFSLARMWDRVSILRKIMKETGMKKVPGYSAVEVNGKHEAFLVEDKNHHQYE 571

Query: 676 EIYPLLGGLTELMKDAGYVVKEEFCSEEEIV 706
           EI  +L  L   M+   +V       EE ++
Sbjct: 572 EILQMLDSLDNEMRVIRHVPDSLHDVEEVVI 602



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 205/457 (44%), Gaps = 57/457 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   I     +K L  G+++   A+  G   +  +   ++  Y      + A  + +  
Sbjct: 108 TFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKM 167

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +I+  V++G   EA+ ++++M+   I GD      +++AC  + ++  G 
Sbjct: 168 VKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGL 227

Query: 196 VVHS-------CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
            VH         +D      + +  +LV MY K G +++A R+F++M  ++AVSW  +IS
Sbjct: 228 SVHGHAVRREMLMD-----DVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALIS 282

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            +A  G  + A  L VEMQ                                   + E   
Sbjct: 283 GFAQNGFAEYALDLLVEMQ-----------------------------------SLEFKP 307

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           D+   V  L ACS VG LKLGK IHG  VR    E   +  ALI MY++C  L  A+ +F
Sbjct: 308 DTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGFELV-LGTALIDMYAKCGSLSCAHAIF 366

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                + +I WN+M++ Y      +E   LF +M  + + P++ T AS+L   +    + 
Sbjct: 367 DRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVD 426

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSLIAG 487
            G+ +   ++           +  +V++++R+G+V EA  + + M+    +  + +L++G
Sbjct: 427 VGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSG 486

Query: 488 ---YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
              Y     G VA K   ++N     PD + + A++S
Sbjct: 487 CHNYRNLLFGEVAAKKILDLN-----PDDLGIYALVS 518



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 148/355 (41%), Gaps = 45/355 (12%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKNP 109
           GN+ +A + F R+R      D VL     ++  C  +  L  G  +H  A+    L  + 
Sbjct: 186 GNVLEAVDMFRRMRKEGIEGDGVL--MLGLVQACANLGELKLGLSVHGHAVRREMLMDDV 243

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           +L   LV  YA       A  + E    +  + W  LIS + ++GF   AL +  +MQS 
Sbjct: 244 ILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSL 303

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
             + D     S L AC ++  +  G+ +H  I     + L +  AL+ MY K G +  A 
Sbjct: 304 EFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGFELVLGTALIDMYAKCGSLSCAH 363

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +FD++  RD + WNTMI++Y   G  KE   LF++M+E  +  +  T+ ++        
Sbjct: 364 AIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASL-------- 415

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC-YGEYENVR 348
                                      L A SH G + +G+    + V  C     E   
Sbjct: 416 ---------------------------LSALSHSGQVDVGQYWFNAMVNECKIPPSEKHY 448

Query: 349 NALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
             ++ ++SR   +  AY L + M  E  +  W ++LSG     C      LF E+
Sbjct: 449 ACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSG-----CHNYRNLLFGEV 498


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 192/633 (30%), Positives = 321/633 (50%), Gaps = 40/633 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  +  L  G+ +HA A A GL  +  +   L+  Y   + +  A  +    
Sbjct: 102 TFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKM 161

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG 194
            +R  + WN +++ Y   G Y  A+     MQ    +R +  T  S+L    +   +  G
Sbjct: 162 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221

Query: 195 RVVHS-CIDAC---HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             +H+ C+ AC   +E  + +  AL+ MY K  Q+  A R+F  M  R+ V+W+ +I  +
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                  EAF LF +M  EG+                                   +L +
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGL----------------------------------CFLSA 307

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
            +    L  C+ +  L +G ++H    +          N+L++MY++   +  A + F  
Sbjct: 308 TSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDE 367

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
            A K  I++ ++LSG      AEE+  +F++M    +EP+  T+ S++P C+ +A LQHG
Sbjct: 368 IAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHG 427

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H  ++ R +  E   + NSL++MYA+ GK+  ++ VFD M  RD V++ ++IAGYGI
Sbjct: 428 KCSHGSVIIRGLALE-TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGI 486

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G G+ A  LF  M      PD VT + +++ACSHSGLV EG+  F+ MT  YGI P++E
Sbjct: 487 HGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRME 546

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL  R GLL++A + I  MP      +W  LLGAC+IH+N  +G+  +  + + 
Sbjct: 547 HYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKL 606

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            PE +G +VL++N+++A G +D+ A+VR   +  G +K PG +W++       F+  D S
Sbjct: 607 GPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQS 666

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
           +  +++IY  L  +   +K  GY     F  ++
Sbjct: 667 HPCSRDIYHELDNIMVDIKKLGYQADTSFVLQD 699



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 247/499 (49%), Gaps = 54/499 (10%)

Query: 138 RYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           R P P    +N LI  Y   G +  A+ +Y+ M   R+  + +T+P VLKAC  ++D+  
Sbjct: 59  RIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRA 118

Query: 194 GRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR +H+   A      LFV  AL+ +Y +  +   AR +F KM  RD V+WN M++ YA+
Sbjct: 119 GRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYAN 178

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G++  A    ++MQ+ G                              +R   + L S+ 
Sbjct: 179 HGMYHHAIAHLLDMQDHG-----------------------------GLRPNASTLVSLL 209

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN---VRNALITMYSRCKDLRHAYILFK 369
            ++     +  GAL  G  IH   +R C  + E    +  AL+ MY++CK L +A  +F 
Sbjct: 210 PLL-----AQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFH 264

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQ 428
               ++ +TW++++ G+   D   E+  LF++M   G+   +  ++AS L +CA +A+L 
Sbjct: 265 GMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLH 324

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G + H  I +  +  + L   NSL+ MYA++G + EA   FD ++ +D ++Y +L++G 
Sbjct: 325 MGTQLHALIAKSGIHAD-LTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G+   A  +F++M    ++PD  TMV+++ ACSH   +  G+     +  I G+  +
Sbjct: 384 VQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI-IRGLALE 442

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
                 ++D+Y + G ++ ++++  KMP     + W T++    IH   G+G+ A    L
Sbjct: 443 TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVS-WNTMIAGYGIH---GLGKEATTLFL 498

Query: 609 ETR-----PENSGYYVLIA 622
             +     P++  +  LIA
Sbjct: 499 GMKNQGFAPDDVTFICLIA 517



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
           W   +E +   G++  A+ VFD +   D   Y +LI  Y   G    A+ L+  M + ++
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRV 96

Query: 510 KPDHVTMVAVLSACSHSGLV-VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
            P+  T   VL AC  S LV +   +      +  G+   L     ++DLY R      A
Sbjct: 97  APNKYTFPFVLKAC--SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPA 154

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + +  KMP     A  A L G    + N G+   A   LL+ +
Sbjct: 155 RNVFAKMPMRDVVAWNAMLAG----YANHGMYHHAIAHLLDMQ 193



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 98/242 (40%), Gaps = 12/242 (4%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   +AF  F +++      D+   +   +I  C  + AL  GK  H   I  GL     
Sbjct: 387 GKAEEAFLVFKKMQACNMEPDIA--TMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  YA     + +  + +    R  + WN +I+ Y   G   EA  ++  M+++ 
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV----HNALVSMYGKFGQVD 226
              D+ T+  ++ AC     V  G+  H      H++ +      +  +V +  + G +D
Sbjct: 505 FAPDDVTFICLIAACSHSGLVTEGK--HWFDTMTHKYGILPRMEHYICMVDLLARGGLLD 562

Query: 227 VARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            A +    M L+ D   W  ++ A   + +  L K+  ++  ++  EG    V+  N  +
Sbjct: 563 EAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFS 622

Query: 283 GG 284
             
Sbjct: 623 AA 624


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 174/540 (32%), Positives = 297/540 (55%), Gaps = 43/540 (7%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQ 224
           M   R+  D  TY  ++K C     V   R+VH  +    +E   F+ N L++MY KFG 
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +D AR LFD+M +R+ VSW TMISAY++  L  +A    + M  EGV  N+ T++++   
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           C       G+L L                                +++HGS ++      
Sbjct: 127 C------DGLLNL--------------------------------RQLHGSILKVGLESD 148

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             VR+ALI  YS+  +   A  +F       ++ WNS++ G+      +E+  L++ M R
Sbjct: 149 VFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKR 208

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +    +  T+ S+L  C  +A L+ G++ H ++L+   +++ L+L N+L++MY + G + 
Sbjct: 209 ADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK---YDQDLILNNALLDMYCKCGSLE 265

Query: 465 EAKSVFD-LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           +A  +F  +M+ +D ++++++IAG    G    ALKLFE M     KP+++T++ VL AC
Sbjct: 266 DANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFAC 325

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           SH+GLV +G   F+ M   +GI P  EH+ C++DL GRAG L++A ++I +M + P +  
Sbjct: 326 SHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVT 385

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W  LLGAC++H+N  +  +AA+++L+  P ++G Y+L++N+YA +  W+ +A+VR  MR 
Sbjct: 386 WRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRT 445

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
            GV+K PGC+W++       F++ D S+ + +EI   L  L + +   GYV    F  ++
Sbjct: 446 RGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQD 505



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 204/455 (44%), Gaps = 48/455 (10%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA EA  R R++A   D +  +++ +I CC    A+ Q + +H    + G E    L+  
Sbjct: 2   KAMEAMHRNRLSA---DAI--TYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINT 56

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  Y  F L + A  L +    R  + W  +IS Y       +AL     M    +R +
Sbjct: 57  LINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPN 116

Query: 175 NFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
            +TY SVL+AC  ++++   R +H S +    E  +FV +AL+  Y K G+   A  +F+
Sbjct: 117 MYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFN 173

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           +M+  D V WN++I  +A      E   L+                              
Sbjct: 174 EMITGDLVVWNSIIGGFAQNSDGDETLHLY------------------------------ 203

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                 RM+  +   D       L AC+ +  L+LG+++H   ++  Y +   + NAL+ 
Sbjct: 204 -----KRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLD 256

Query: 354 MYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
           MY +C  L  A +LF +M  EK +I+W++M++G      + ++  LF  M   G +PNY+
Sbjct: 257 MYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYI 316

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFD 471
           TI  +L  C+    +  G  +   +      +     +  ++++  R+GK+ EA K + +
Sbjct: 317 TILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHE 376

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           +    D VT+  L+    +     +A+   +E+ K
Sbjct: 377 MNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILK 411


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 193/629 (30%), Positives = 330/629 (52%), Gaps = 45/629 (7%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV-LVPKLVTFYASFSLYNNACFLVE 133
           +S A ++     V++   G+  HA  +       P  L   LV  YA     N+A  ++E
Sbjct: 7   NSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILE 66

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA-CGEMMDVD 192
            +  R  + W  LI+  V++G +  AL  +  M S  +R ++FT+P VLKA  G  MD  
Sbjct: 67  LAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTT 126

Query: 193 FGRVVHSCIDACHEW---SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
            G+ +H+   A  E     +FV  ++  MY K G ++ A ++FD+M  R+  +WN  IS 
Sbjct: 127 -GKQLHAL--AVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISN 183

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
               G  +++   F+E+                   LR G                   D
Sbjct: 184 SVLHGRPEDSVIAFIEL-------------------LRVGGKP----------------D 208

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           S+     L ACS    L  G ++HG  +R  YG+  +V N LI  Y +C ++  + ++F 
Sbjct: 209 SITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFD 268

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
              E++ ++W+S+++ Y   +  E+++ LF    +  +EP    ++S+L  CA ++ ++ 
Sbjct: 269 RMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEF 328

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G+      ++ A   +++ + ++LV+MY + G +  A+  F+ M  R+ V++ +L+ GY 
Sbjct: 329 GRSVQALAVK-ACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYA 387

Query: 490 IQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            QG    A+ L EEM     I P +V+++  LSACS +G +  G K FE M   YG+ P 
Sbjct: 388 HQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPG 447

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
            EH+AC+VDL GRAG++  A + I +MP+ PT ++W  LLGAC++H    +G+ AAEKL 
Sbjct: 448 PEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLF 507

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P++SG +V+++NM+AATG W+++  VR  M+++G++K  G +W+   +    F   D
Sbjct: 508 ELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSRIHMFQAKD 567

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYVVKE 697
            S+ +  EI  +LG L + M+DA   + +
Sbjct: 568 KSHEKDPEIQDILGKLRKEMQDAAGCIAD 596


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 188/579 (32%), Positives = 306/579 (52%), Gaps = 71/579 (12%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           +NL+I  + ++G + +A+ +++Q++   +  DNFTYP V KA G + +V  G  V+  + 
Sbjct: 100 YNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFV- 158

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                                            LE D    N+++  YA  G  +   Q+
Sbjct: 159 -----------------------------VKSGLEFDTYVCNSLMDMYAEVGRVQNLRQV 189

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACS 321
           F EM +     +V++WN +  G ++   ++  +++  RM+ Q +   + ATV+  L AC 
Sbjct: 190 FEEMPQR----DVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACI 245

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            +  L+LGKEIH   VR   G    + NAL+ MY +C  L  A  +F     K++I W S
Sbjct: 246 ALKMLELGKEIH-RYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTS 304

Query: 382 MLSGYTH---LDCAEE----------------------------SAFLFREMFRSGVEPN 410
           M+SGY +   LD A E                            +  LFREM    V P+
Sbjct: 305 MVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPD 364

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             T+ ++L  CA++  L+ GK  H YI    +  + ++   +L+EMYA+ G + ++  +F
Sbjct: 365 RFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVV-GTALIEMYAKCGFIEKSLEIF 423

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           + +  +D  ++TS+I G  + G+   AL+LF EM +  +KPD +T + VLSACSH GLV 
Sbjct: 424 NGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVE 483

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA---MWATL 587
           EG+K F  MT++Y I P+LEH+ C++DL GRAG L++A+E+I K P         ++  L
Sbjct: 484 EGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGAL 543

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L AC+ H N  +GE  A++L+     +S  + L+AN+YA+   W+ + KVR  M+DLGV+
Sbjct: 544 LSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVK 603

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           K+PGC+ V+   +   FLV D S+ + +EIY +L  + +
Sbjct: 604 KVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAK 642



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 225/502 (44%), Gaps = 40/502 (7%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFA-HIIFCCGKVKALAQGKQLHACAI 101
            +K F   G+  KA   F ++R    S D     F    I C G+V+   +G++++   +
Sbjct: 103 VIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVR---EGEKVYGFVV 159

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
             GLE +  +   L+  YA      N   + E    R  + WN+LIS YV+   Y +A+ 
Sbjct: 160 KSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVD 219

Query: 162 VYKQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYG 220
           V+++MQ +  +R +  T  S L AC  +  ++ G+ +H  +     +++ + NALV MY 
Sbjct: 220 VFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNALVDMYC 279

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G + +AR +F+ M  +  + W +M+S Y + G   EA +LF    E     +V+ W  
Sbjct: 280 KCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELF----ERSPVRDVVLWTA 335

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +  G ++   F   + L   M+ +    D    V  L  C+ +G L+ GK IHG      
Sbjct: 336 MINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENK 395

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                 V  ALI MY++C  +  +  +F    EK   +W S++ G        ++  LF 
Sbjct: 396 IMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFA 455

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           EM ++GV+P+ +T   +L  C+    ++ G++    +         L  +  L+++  R+
Sbjct: 456 EMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRA 515

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G++ EA+   +L+ +   V    ++  YG                            A+L
Sbjct: 516 GQLDEAE---ELIEKSPNVNNEVIVPLYG----------------------------ALL 544

Query: 521 SACSHSGLVVEGQKQFERMTSI 542
           SAC   G V  G++  +R+  I
Sbjct: 545 SACRTHGNVEMGERVAKRLVGI 566



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 15/188 (7%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS-GKVPEAKS 468
           ++ T  S + L     ++QH K+    ILR         L   +V     S G +  A+ 
Sbjct: 28  SHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAER 87

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           +F+ +       Y  +I  +   G  R A+ LF ++ +  + PD+ T   V  A    G 
Sbjct: 88  IFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGE 147

Query: 529 VVEGQKQFERMTSIYGIFP----QLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           V EG+K       +YG       + + + C  ++D+Y   G +   +++  +MP     +
Sbjct: 148 VREGEK-------VYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVS 200

Query: 583 MWATLLGA 590
            W  L+  
Sbjct: 201 -WNVLISG 207


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 196/618 (31%), Positives = 317/618 (51%), Gaps = 40/618 (6%)

Query: 91  AQGKQLHACAIALGLEKNPVLVP-KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           A   QLHACA+ LGL +  V     LV  Y  F   + A  + +  + R    WN ++S 
Sbjct: 84  ASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSG 143

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
             R+   AEA+ ++ +M    + GD  T  SVL  C  + D     V+H   +    +  
Sbjct: 144 LCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKE 203

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           LFV NAL+ +YGK G ++ A+ +F  M  RD V+WN++IS    +G    A ++F  M+ 
Sbjct: 204 LFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRG 263

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
            GV  +V+T  ++A    + G+ +    L                        H   ++ 
Sbjct: 264 SGVSPDVLTLVSLASAIAQGGDGRSAKSL------------------------HCYVMRR 299

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G ++    + G         NA++ MY++  ++  A  +F     +  ++WN++++GY  
Sbjct: 300 GWDVD-DIIAG---------NAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQ 349

Query: 389 LDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
              A E+   +  M +  G++    T  S+LP  + +  LQ G   H   ++  + N  +
Sbjct: 350 NGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGL-NVDV 408

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            +   L+++YA+ GK+ EA  +F+ M RR    + ++I+G G+ G G  AL LF  M + 
Sbjct: 409 YVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQE 468

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            IKPDHVT V++L+ACSH+GLV +G+  F+ M   Y I P  +H+ACM D+ GRAG L++
Sbjct: 469 GIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDE 528

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A   I  MP  P SA+W  LLGAC+IH N  +G+ A++ L E  PEN GYYVL++NMYA 
Sbjct: 529 AFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAK 588

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS--NVQAQEIYPLLGGLT 685
            G WD + +VR+ +R   ++K PG + ++     + F   + +  + Q +EI   L  L 
Sbjct: 589 VGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLL 648

Query: 686 ELMKDAGYVVKEEFCSEE 703
             ++  GYV    F  ++
Sbjct: 649 AKIRSVGYVSDYSFVLQD 666



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 212/458 (46%), Gaps = 49/458 (10%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQS--RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           N LI+ + R      A  + + + S     R D FT+PS+++A            +H+C 
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNAS---AAQLHACA 93

Query: 202 --DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
                   S+F   +LV  Y +FG++  A ++FD+M ERD  +WN M+S         EA
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             LF  M  EGV  + +T +++   C+  G                   D V  ++    
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMCVLLG-------------------DQVLALV---- 190

Query: 320 CSHVGALKLG--KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
             HV A+K G  KE+              V NALI +Y +   L  A  +F     + ++
Sbjct: 191 -MHVYAVKHGLDKELF-------------VCNALIDVYGKLGMLEEAQCVFHGMECRDLV 236

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           TWNS++SG         +  +F+ M  SGV P+ +T+ S+    A+  + +  K  HCY+
Sbjct: 237 TWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYV 296

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           +RR    + ++  N++V+MYA+   +  A+ +FD M  +D V++ +LI GY   G    A
Sbjct: 297 MRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEA 356

Query: 498 LKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           ++ +  M K++ +K    T V+VL A SH G + +G +       I G+   +    C++
Sbjct: 357 VERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKI-GLNVDVYVGTCLI 415

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           DLY + G L +A  +  KMP   T   W  ++    +H
Sbjct: 416 DLYAKCGKLAEAMLLFEKMPRRSTGP-WNAIISGLGVH 452



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 10/235 (4%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++     + AL QG ++HA +I +GL  +  +   L+  YA       A  L E  
Sbjct: 375 TFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKM 434

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R   PWN +IS     G  AEAL ++ +MQ   I+ D+ T+ S+L AC     VD GR
Sbjct: 435 PRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGR 494

Query: 196 VVHSCIDACHEW-SLFVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYAS 252
                +   ++   +  H A +  M G+ GQ+D A      M ++ D+  W  ++ A   
Sbjct: 495 SFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRI 554

Query: 253 KG---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            G   + K A Q   E+  E V   V+  N  A    + G + GV E+ S +R Q
Sbjct: 555 HGNVEMGKVASQNLFELDPENVGYYVLMSNMYA----KVGKWDGVDEVRSLVRRQ 605


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 192/633 (30%), Positives = 321/633 (50%), Gaps = 40/633 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  +  L  G+ +HA A A GL  +  +   L+  Y   + +  A  +    
Sbjct: 102 TFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKM 161

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG 194
            +R  + WN +++ Y   G Y  A+     MQ    +R +  T  S+L    +   +  G
Sbjct: 162 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221

Query: 195 RVVHS-CIDAC---HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             +H+ C+ AC   +E  + +  AL+ MY K  Q+  A R+F  M  R+ V+W+ +I  +
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                  EAF LF +M  EG+                                   +L +
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGL----------------------------------CFLSA 307

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
            +    L  C+ +  L +G ++H    +          N+L++MY++   +  A + F  
Sbjct: 308 TSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDE 367

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
            A K  I++ ++LSG      AEE+  +F++M    +EP+  T+ S++P C+ +A LQHG
Sbjct: 368 IAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHG 427

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H  ++ R +  E   + NSL++MYA+ GK+  ++ VFD M  RD V++ ++IAGYGI
Sbjct: 428 KCSHGSVIIRGLALE-TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGI 486

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G G+ A  LF  M      PD VT + +++ACSHSGLV EG+  F+ MT  YGI P++E
Sbjct: 487 HGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRME 546

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL  R GLL++A + I  MP      +W  LLGAC+IH+N  +G+  +  + + 
Sbjct: 547 HYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKL 606

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            PE +G +VL++N+++A G +D+ A+VR   +  G +K PG +W++       F+  D S
Sbjct: 607 GPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQS 666

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
           +  +++IY  L  +   +K  GY     F  ++
Sbjct: 667 HPCSRDIYHELDNIMVDIKKLGYQADTSFVLQD 699



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 247/499 (49%), Gaps = 54/499 (10%)

Query: 138 RYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           R P P    +N LI  Y   G +  A+ +Y+ M   R+  + +T+P VLKAC  ++D+  
Sbjct: 59  RIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRA 118

Query: 194 GRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR +H+   A      LFV  AL+ +Y +  +   AR +F KM  RD V+WN M++ YA+
Sbjct: 119 GRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYAN 178

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G++  A    ++MQ+ G                              +R   + L S+ 
Sbjct: 179 HGMYHHAIAHLLDMQDHG-----------------------------GLRPNASTLVSLL 209

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN---VRNALITMYSRCKDLRHAYILFK 369
            ++     +  GAL  G  IH   +R C  + E    +  AL+ MY++CK L +A  +F 
Sbjct: 210 PLL-----AQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFH 264

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQ 428
               ++ +TW++++ G+   D   E+  LF++M   G+   +  ++AS L +CA +A+L 
Sbjct: 265 GMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLH 324

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G + H  I +  +  + L   NSL+ MYA++G + EA   FD ++ +D ++Y +L++G 
Sbjct: 325 MGTQLHALIAKSGIHAD-LTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G+   A  +F++M    ++PD  TMV+++ ACSH   +  G+     +  I G+  +
Sbjct: 384 VQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI-IRGLALE 442

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
                 ++D+Y + G ++ ++++  KMP     + W T++    IH   G+G+ A    L
Sbjct: 443 TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVS-WNTMIAGYGIH---GLGKEATTLFL 498

Query: 609 ETR-----PENSGYYVLIA 622
             +     P++  +  LIA
Sbjct: 499 GMKNQGFAPDDVTFICLIA 517



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
           W   +E +   G++  A+ VFD +   D   Y +LI  Y   G    A+ L+  M + ++
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRV 96

Query: 510 KPDHVTMVAVLSACSHSGLV-VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
            P+  T   VL AC  S LV +   +      +  G+   L     ++DLY R      A
Sbjct: 97  APNKYTFPFVLKAC--SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPA 154

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + +  KMP     A  A L G    + N G+   A   LL+ +
Sbjct: 155 RNVFAKMPMRDVVAWNAMLAG----YANHGMYHHAIAHLLDMQ 193



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 98/242 (40%), Gaps = 12/242 (4%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   +AF  F +++      D+   +   +I  C  + AL  GK  H   I  GL     
Sbjct: 387 GKAEEAFLVFKKMQACNMEPDIA--TMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+  YA     + +  + +    R  + WN +I+ Y   G   EA  ++  M+++ 
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV----HNALVSMYGKFGQVD 226
              D+ T+  ++ AC     V  G+  H      H++ +      +  +V +  + G +D
Sbjct: 505 FAPDDVTFICLIAACSHSGLVTEGK--HWFDTMTHKYGILPRMEHYICMVDLLARGGLLD 562

Query: 227 VARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            A +    M L+ D   W  ++ A   + +  L K+  ++  ++  EG    V+  N  +
Sbjct: 563 EAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFS 622

Query: 283 GG 284
             
Sbjct: 623 AA 624


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 182/566 (32%), Positives = 300/566 (53%), Gaps = 44/566 (7%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD---NFTYPSVLKACGEMMDVDFG 194
           R  + W  +IS   ++  ++EA+  +  M   RI G+    F + S ++AC  +  ++ G
Sbjct: 4   RNLVSWTAMISGLSQNSKFSEAIRTFCGM---RICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + +H   +       LFV + L  MY K G +  A ++F++M  +D VSW  MI  Y+  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS-- 118

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                                            + G F+  L    +M  +E  +D    
Sbjct: 119 ---------------------------------KIGEFEEALLAFKKMIDEEVTIDQHVL 145

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              LGAC  + A K G+ +H S V+  +     V NAL  MYS+  D+  A  +F + +E
Sbjct: 146 CSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSE 205

Query: 374 -KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            ++++++  ++ GY   +  E+   +F E+ R G+EPN  T +S++  CA  A L+ G +
Sbjct: 206 CRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQ 265

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  +++   F+E   + + LV+MY + G + +A   FD +    E+ + SL++ +G  G
Sbjct: 266 LHAQVMK-INFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHG 324

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G+ A+K+FE M    +KP+ +T +++L+ CSH+GLV EG   F  M   YG+ P  EH+
Sbjct: 325 LGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY 384

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +C++DL GRAG L +AKE I +MP+ P +  W + LGAC+IH +  +G+ AAEKL++  P
Sbjct: 385 SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEP 444

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           +NSG  VL++N+YA    W+ +  VR  MRD  V+K+PG +WVD G     F  +D S+ 
Sbjct: 445 KNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHP 504

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEE 698
           +   IY  L  L + +K AGYV + +
Sbjct: 505 RKSAIYEKLDTLLDQIKAAGYVPRTD 530



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 116/498 (23%), Positives = 217/498 (43%), Gaps = 56/498 (11%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
             S+A   F  +RI          +F+  I  C  + ++  GKQ+H  A+  G+     +
Sbjct: 21  KFSEAIRTFCGMRICGEVPTQF--AFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 78

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
              L   Y+      +AC + E    +  + W  +I  Y + G + EAL  +K+M    +
Sbjct: 79  GSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 138

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
             D     S L ACG +    FGR VH S +    E  +FV NAL  MY K G ++ A  
Sbjct: 139 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 198

Query: 231 LFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +F    E R+ VS+  +I  Y      ++   +FVE++ +G+E N  T++++        
Sbjct: 199 VFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSL-------- 250

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                                      + AC++  AL+ G ++H   ++  + E   V +
Sbjct: 251 ---------------------------IKACANQAALEQGTQLHAQVMKINFDEDPFVSS 283

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
            L+ MY +C  L  A   F    + + I WNS++S +      +++  +F  M   GV+P
Sbjct: 284 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 343

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAM----FNEHLLLWNSLVEMYARSGKVPE 465
           N +T  S+L  C+    ++ G ++  Y + +        EH   ++ ++++  R+G++ E
Sbjct: 344 NAITFISLLTGCSHAGLVEEGLDYF-YSMDKTYGVVPGEEH---YSCVIDLLGRAGRLKE 399

Query: 466 AKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           AK   + M    +   + S +    I G+  +     E++ K  ++P +   + +LS   
Sbjct: 400 AKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK--LEPKNSGALVLLSN-- 455

Query: 525 HSGLVVEGQKQFERMTSI 542
               +   ++Q+E + S+
Sbjct: 456 ----IYANERQWEDVRSV 469



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 8/243 (3%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108
           G   +A  AF ++       +V +D       +  CG +KA   G+ +H+  + LG E +
Sbjct: 121 GEFEEALLAFKKM----IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD 176

Query: 109 PVLVPKLVTFYASFSLYNNACFLVE-NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
             +   L   Y+      +A  +   +S  R  + +  LI  YV      + L V+ +++
Sbjct: 177 IFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 236

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVD 226
            + I  + FT+ S++KAC     ++ G  +H+ +   + +   FV + LV MYGK G ++
Sbjct: 237 RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLE 296

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A + FD++ +   ++WN+++S +   GL K+A ++F  M + GV+ N IT+ ++  GC 
Sbjct: 297 QAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS 356

Query: 287 RTG 289
             G
Sbjct: 357 HAG 359



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 117/253 (46%), Gaps = 35/253 (13%)

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           ++++++W +M+SG +      E+   F  M   G  P     +S +  CA + +++ GK+
Sbjct: 3   QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 62

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HC  L+  + +E L + ++L +MY++ G + +A  VF+ M  +DEV++T++I GY   G
Sbjct: 63  MHCLALKFGIGSE-LFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 121

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACS-----------HSGLVVEG--------- 532
           E   AL  F++M   ++  D   + + L AC            HS +V  G         
Sbjct: 122 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGN 181

Query: 533 --------QKQFERMTSIYGIFPQLEH---FACMVDLYGRAGLLNKAKEIITKM---PYT 578
                       E  ++++GI  +  +   + C++D Y     + K   +  ++      
Sbjct: 182 ALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 241

Query: 579 PTSAMWATLLGAC 591
           P    +++L+ AC
Sbjct: 242 PNEFTFSSLIKAC 254


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 210/704 (29%), Positives = 348/704 (49%), Gaps = 70/704 (9%)

Query: 8   LILNGLSVSQLEKFIPKKWK----QPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRI 63
           LI N  +VS      P K K      I N  +   NL+  +  +   GN S+    F+  
Sbjct: 19  LICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLM--ISGYGRAGNSSEVIRCFSLF 76

Query: 64  RITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS 121
            +++    +  D  +F  ++  C   + +  G ++H  A+  G   +  +   L+  Y+ 
Sbjct: 77  MLSSG---LTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSR 130

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
           +    NA  L +   +R    WN +IS Y + G   EAL +   +++     D+ T  S+
Sbjct: 131 YKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSL 186

Query: 182 LKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
           L AC E  D + G  +H         S  + + L S   +  Q     ++FD+M  RD +
Sbjct: 187 LSACTEAGDFNRGVTIH---------SYSIKHGLESELLRDCQ-----KVFDRMYVRDLI 232

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           SWN++I AY        A  LF EM+                              LSR+
Sbjct: 233 SWNSIIKAYELNEQPLRAISLFQEMR------------------------------LSRI 262

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKD 360
           +     L S+A+++     S +G ++  + + G  +R G + E   + NA++ MY++   
Sbjct: 263 QPDCLTLISLASIL-----SQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGL 317

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILP 419
           +  A  +F       +I+WN+++SGY     A E+  ++  M   G +  N  T  S+LP
Sbjct: 318 VDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLP 377

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
            C++   L+ G + H  +L+  ++ + + +  SL +MY + G++ +A S+F  + R + V
Sbjct: 378 ACSQAGALRQGMKLHGRLLKNGLYLD-VFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV 436

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
            + +LIA +G  G G  A+ LF+EM    +KPDH+T V +LSACSHSGLV EGQ  FE M
Sbjct: 437 PWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMM 496

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGI 599
            + YGI P L+H+ CMVD+YGRAG L  A + I  M   P +++W  LL AC++H N  +
Sbjct: 497 QTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 556

Query: 600 GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659
           G+ A+E L E  PE+ GY+VL++NMYA+ G W+ + ++R+     G+RK PG + ++  N
Sbjct: 557 GKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDN 616

Query: 660 VFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
               F   + ++   +E+Y  L  L   +K  GYV    F  ++
Sbjct: 617 KVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQD 660


>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
          Length = 1008

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 195/627 (31%), Positives = 324/627 (51%), Gaps = 47/627 (7%)

Query: 37   RINLLE---TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQG 93
            R NLL     +  +   G    + +AF  ++      D +  S  +I+  C K++A+  G
Sbjct: 420  RRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAI--SIVNILSACSKLEAILLG 477

Query: 94   KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
            K  HA +     + N  +   L+ FY+     +++  L +   +R  + WN LIS  V +
Sbjct: 478  KAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHN 537

Query: 154  GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVH 212
            G   +A+ +  +MQ  ++  D  T  S++  C    ++  G  +H   I       + + 
Sbjct: 538  GDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLHGYAIKTGFACDVSLV 597

Query: 213  NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
            NAL+SMY   G ++  + LF+ M  R  VSWN +I+ Y    L  E    F +M  EG +
Sbjct: 598  NALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIREGQK 657

Query: 273  VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
             N +T                +L LL   RT                      L  GK I
Sbjct: 658  PNYVT----------------LLNLLPSCRT----------------------LLQGKSI 679

Query: 333  HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
            H  AVR        +  +LI+MY+R +++     LF+M  ++ I  WN+++S Y     A
Sbjct: 680  HAFAVRTGVIVETPIITSLISMYARFENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNA 739

Query: 393  EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
            +ES   F E+  + VEP+Y+T  S++  C ++++L        Y++++  F++H+++ N+
Sbjct: 740  KESVTFFCELLHARVEPDYITFLSLISACVQLSSLNLSNSVMAYVIQKG-FDKHIVISNA 798

Query: 453  LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
            L++++AR G +  AK +F+ +S +D V+++++I GYG+ G+   AL L  +M  + +KPD
Sbjct: 799  LIDLFARCGNISIAKKIFEGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPD 858

Query: 513  HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
             +T  +VLSACSH G + +G   F  M    G+  ++EH+ACMVDL GR G LN+A + +
Sbjct: 859  GITYASVLSACSHGGFIDQGWMIFNSMVE-EGVPRRMEHYACMVDLLGRTGQLNEAYDFV 917

Query: 573  TKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632
             K+P  P+ ++  +LLGAC IH N  +GE  +  L E  P+NSG YV++ N+YAA G W 
Sbjct: 918  EKLPCKPSVSLLESLLGACIIHGNVKLGEKISSLLFELDPKNSGSYVMLYNIYAAAGRWM 977

Query: 633  KLAKVRTCMRDLGVRKIPGCAWVDAGN 659
               +VR+ M +  +RKIPG + V+ GN
Sbjct: 978  DANRVRSDMEERQLRKIPGFSLVE-GN 1003



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 226/458 (49%), Gaps = 57/458 (12%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-- 201
           NL+I      G + + LCVY + +      D+FT+P V+KAC  +  V     VH CI  
Sbjct: 124 NLMIRRLCDHGLFEDVLCVYLKCRVLGCPSDDFTFPFVIKACTALGAVWIAEGVH-CIVL 182

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               E +L +  ALV  Y K G++  AR + DK+ + D V+WN +IS Y+  G  KE F+
Sbjct: 183 RTSFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFE 242

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +  ++ E G++ NV T             F  ++ L +RM+                   
Sbjct: 243 VLRQINEMGLKPNVST-------------FASIIPLCTRMK------------------- 270

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
               L +GK IHG  V+  +   E +  ALI+MY+   +L  A  LF   AEK+++ WNS
Sbjct: 271 ---CLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNS 327

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+S Y     + E+  +F++M ++ ++PN VT  SI+P C   AN  +GK  H ++++  
Sbjct: 328 MISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYR 387

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           + +  L +  +L+ MYA+ G +  A  +F  M RR+ +++ S+I+GYG  G    ++  F
Sbjct: 388 L-DSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAF 446

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ--------KQFERMTSIYGIFPQLEHFA 553
            +M      PD +++V +LSACS    ++ G+        K+F+   +I           
Sbjct: 447 CDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISN--------- 497

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
            ++  Y   G L+ + ++  KMP    +  W TL+  C
Sbjct: 498 ALLAFYSDCGKLSSSFKLFQKMPLR-NAISWNTLISGC 534



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 245/521 (47%), Gaps = 53/521 (10%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           + FE   +I       +V   +FA II  C ++K L  GK +H   +  G   +  L P 
Sbjct: 239 EVFEVLRQINEMGLKPNV--STFASIIPLCTRMKCLDIGKSIHGFVVKSGFSSDEFLTPA 296

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L++ YA       A  L +++  +  + WN +IS Y ++   +EA  +++QM    ++ +
Sbjct: 297 LISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPN 356

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFD 233
             T+ S++  C    +  +G+ +H+ +     +  L V  AL+SMY K G ++ A  +F 
Sbjct: 357 VVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFY 416

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           +M  R+ +SWN+MIS Y   GLW+ +   F +MQ EG +                     
Sbjct: 417 QMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDP-------------------- 456

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                          D+++ V  L ACS + A+ LGK  H  + R  +    N+ NAL+ 
Sbjct: 457 ---------------DAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLA 501

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
            YS C  L  ++ LF+    ++ I+WN+++SG  H    +++  L  +M +  +E + VT
Sbjct: 502 FYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVT 561

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           + SI+P+C    NL  G   H Y ++   F   + L N+L+ MY   G +   K +F++M
Sbjct: 562 LISIIPICRVAENLIQGMTLHGYAIKTG-FACDVSLVNALISMYFNCGDINAGKFLFEVM 620

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS--------- 524
             R  V++ +LI GY         +  F +M +   KP++VT++ +L +C          
Sbjct: 621 PWRSIVSWNALITGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLPSCRTLLQGKSIH 680

Query: 525 ----HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
                +G++VE       + S+Y  F  +  F  + ++ G+
Sbjct: 681 AFAVRTGVIVE-TPIITSLISMYARFENINSFIFLFEMGGK 720



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 252/527 (47%), Gaps = 53/527 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I  C  + A+   + +H   +    E+N V+   LV FYA       A  +++  
Sbjct: 157 TFPFVIKACTALGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMVKARLVLDKI 216

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           +    + WN LIS Y  +GF  E   V +Q+    ++ +  T+ S++  C  M  +D G+
Sbjct: 217 SQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGK 276

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   + +      F+  AL+SMY   G + +AR LFD   E++ V WN+MISAYA   
Sbjct: 277 SIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQ 336

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EAF++F +M +  ++ NV+T+ +I   C  + NF                       
Sbjct: 337 KSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANF----------------------- 373

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
                         GK +H   ++       +V  AL++MY++  DL  A  +F     +
Sbjct: 374 ------------WYGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRR 421

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++++WNSM+SGY H    E S   F +M   G +P+ ++I +IL  C+++  +  GK  H
Sbjct: 422 NLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAH 481

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            +  R+  F+ +L + N+L+  Y+  GK+  +  +F  M  R+ +++ +LI+G    G+ 
Sbjct: 482 AFSFRKE-FDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDT 540

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           + A+ L  +M + +++ D VT+++++  C  +  +++G        +++G +     FAC
Sbjct: 541 KKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGM-------TLHG-YAIKTGFAC 592

Query: 555 -------MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
                  ++ +Y   G +N  K +   MP+    + W  L+   + H
Sbjct: 593 DVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVS-WNALITGYRFH 638



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 143/560 (25%), Positives = 263/560 (46%), Gaps = 60/560 (10%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A     S+AF+ F ++       +VV  +F  II CC        GK LHA  +   L+
Sbjct: 332 YAQNQKSSEAFKMFQQMLKANMQPNVV--TFVSIIPCCENSANFWYGKSLHAHVMKYRLD 389

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               +   L++ YA     N+A F+      R  L WN +IS Y  +G +  ++  +  M
Sbjct: 390 SQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDM 449

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           Q      D  +  ++L AC ++  +  G+  H+       + +L + NAL++ Y   G++
Sbjct: 450 QFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKL 509

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             + +LF KM  R+A+SWNT+IS     G  K+A  L  +MQ+E +E++++T  +I   C
Sbjct: 510 SSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPIC 569

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                           R  E  +                    G  +HG A++  +    
Sbjct: 570 ----------------RVAENLIQ-------------------GMTLHGYAIKTGFACDV 594

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           ++ NALI+MY  C D+     LF++   +SI++WN++++GY       E    F +M R 
Sbjct: 595 SLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIRE 654

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G +PNYVT+ ++LP C     L  GK  H + +R  +  E  ++  SL+ MYAR   +  
Sbjct: 655 GQKPNYVTLLNLLPSC---RTLLQGKSIHAFAVRTGVIVETPII-TSLISMYARFENINS 710

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC-- 523
              +F++  + D   + ++++ Y      + ++  F E+   +++PD++T ++++SAC  
Sbjct: 711 FIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQ 770

Query: 524 ------SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
                 S+S +    QK F++   I            ++DL+ R G ++ AK+I   +  
Sbjct: 771 LSSLNLSNSVMAYVIQKGFDKHIVISN---------ALIDLFARCGNISIAKKIFEGLS- 820

Query: 578 TPTSAMWATLLGACQIHRNT 597
           +  +  W+T++    +H ++
Sbjct: 821 SKDAVSWSTMINGYGLHGDS 840


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 193/631 (30%), Positives = 311/631 (49%), Gaps = 57/631 (9%)

Query: 70  HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           H ++ + F  ++  C   K   Q  Q+ A  IA G + N  + PKLVT  A+      A 
Sbjct: 34  HRLLEERFISLLQSC---KTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYAR 90

Query: 130 FLVENSNIRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
            L +    + P P    WN +   Y +   Y E + ++ QM+   IR + FT+P VLK+C
Sbjct: 91  QLFD----QIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSC 146

Query: 186 GEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
           G++  +  G  VH  +  C    + FV   L+ MY   G V  A ++F +M ER+ V+W 
Sbjct: 147 GKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWT 206

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           +MI+ Y        A +LF    +   E +V+ WN +  G +  G+     +L   M  +
Sbjct: 207 SMINGYILSADLVSARRLF----DLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNR 262

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
           +                                           N ++  Y+   ++   
Sbjct: 263 DVMF---------------------------------------WNTVLKGYATNGNVEAL 283

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCAR 423
             LF+   E++I +WN+++ GY H     E    F+ M   S V PN  T+ ++L  CAR
Sbjct: 284 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 343

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           +  L  GK  H Y    +    ++ + N+L++MYA+ G +  A SVF  M  +D +++ +
Sbjct: 344 LGALDLGKWVHVYA-ESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNT 402

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           LI G  +   G  AL LF +M     KPD +T + +L AC+H GLV +G   F+ M   Y
Sbjct: 403 LIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDY 462

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
            I PQ+EH+ CMVD+  RAG L +A   + KMP      +WA LLGAC+I++N  + E A
Sbjct: 463 LIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELA 522

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
            ++L+E  P+N   YV+++N+Y   G W+ +A+++  MRD G +K+PGC+ ++  +    
Sbjct: 523 LQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVE 582

Query: 664 FLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           F   D  + Q +EIY +L GL ++++  GYV
Sbjct: 583 FYSLDERHPQIEEIYGVLRGLVKVLRSFGYV 613


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 193/630 (30%), Positives = 319/630 (50%), Gaps = 69/630 (10%)

Query: 107 KNPVLVPK--LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           KNP ++ +  ++  YA     ++A  + ++   R  + WN++IS   + G   EAL +  
Sbjct: 221 KNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVV 280

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQ 224
            M  + +R D+ TY S L AC  +  +++G+ +H                          
Sbjct: 281 DMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLH-------------------------- 314

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           V V R L       D    + M+  YA  G +KEA ++F  +++     N ++W  + GG
Sbjct: 315 VQVIRNL----PHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDR----NSVSWTVLIGG 366

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
            L+ G F   +EL ++MR +   +D  A    +  C +   + LG ++H   ++  +   
Sbjct: 367 FLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRA 426

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSI---------------------------- 376
             V N+LI+MY++C +L++A ++F   AE+ I                            
Sbjct: 427 VVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMST 486

Query: 377 ---ITWNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKE 432
              ITWN+ML  Y      E+   ++ +M     V P++VT  ++   CA +   + G +
Sbjct: 487 RNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQ 546

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
              + ++  +  +  ++ N+++ MY++ G++ EA+  FD +SR+D V++ ++I GY   G
Sbjct: 547 IIGHTVKVGLILDTSVV-NAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHG 605

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G+ A+++F+++     KPD+++ VAVLS CSHSGLV EG+  F+ M   + I P LEHF
Sbjct: 606 MGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHF 665

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +CMVDL GRAG L +AK +I +MP  PT+ +W  LL AC+ H N  + E AA+ L +   
Sbjct: 666 SCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDS 725

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
             SG Y+L+A MYA  G  D  A+VR  MRD G++K PG +W++  N    F  +D S+ 
Sbjct: 726 PGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHP 785

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEFCSE 702
           Q   I   L  L E +   GYV  E   SE
Sbjct: 786 QVIAIREKLDELMEKIAHLGYVRTESPRSE 815



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 212/400 (53%), Gaps = 6/400 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++   +  C ++ +L  GKQLH   I      +P +   +V  YA    +  A  +  + 
Sbjct: 293 TYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSL 352

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W +LI  +++ G ++E++ ++ QM++  +  D F   +++  C   MD+  G 
Sbjct: 353 RDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGS 412

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS C+ + H  ++ V N+L+SMY K G +  A  +F+ M ERD VSW  MI+AY+  G
Sbjct: 413 QLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVG 472

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL-DSVAT 313
              +A + F +M       NVITWN + G  ++ G  +  L++ S M T++  + D V  
Sbjct: 473 NIAKAREFFDDMSTR----NVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTY 528

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           V     C+ +GA KLG +I G  V+       +V NA+ITMYS+C  +  A   F   + 
Sbjct: 529 VTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSR 588

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K +++WN+M++GY+     +++  +F ++   G +P+Y++  ++L  C+    ++ GK +
Sbjct: 589 KDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFY 648

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
              + R    +  L  ++ +V++  R+G + EAK++ D M
Sbjct: 649 FDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEM 688



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/521 (23%), Positives = 229/521 (43%), Gaps = 53/521 (10%)

Query: 67  AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE-------------------- 106
           A SH  +  + A  +  CG   AL   + LH+  I +GL                     
Sbjct: 18  ATSHMAITQALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALS 77

Query: 107 ------KNPVLVPKLVTF------YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
                 ++ +  P ++T       YA     ++A  L      R    WN ++S Y + G
Sbjct: 78  DARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSG 137

Query: 155 FYAEALCVYKQMQSRRIRGDN----FTYPSVLKACGEM--MDVDFGRV-VHSCIDACHEW 207
            +  AL ++  M   R  GD+    FT+  V+K+CG +   +V    + + S  D+  + 
Sbjct: 138 QFLNALDIFVSM---RQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDP 194

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
              V  ALV M  + G +D A + F ++     +  N+M+  YA       A ++F  M 
Sbjct: 195 D--VQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMP 252

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           E     +V++WN +     ++G  +  L+++  M  +    DS      L AC+ + +L+
Sbjct: 253 ER----DVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLE 308

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            GK++H   +R        V +A++ +Y++C   + A  +F    +++ ++W  ++ G+ 
Sbjct: 309 WGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFL 368

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
              C  ES  LF +M    +  +   +A+++  C    ++  G + H   L+       +
Sbjct: 369 QYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSG-HTRAV 427

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
           ++ NSL+ MYA+ G +  A+ +F+ M+ RD V++T +I  Y   G    A + F++M+  
Sbjct: 428 VVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTR 487

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            +    +T  A+L A    G   +G K +  M +   + P 
Sbjct: 488 NV----ITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPD 524



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 181/382 (47%), Gaps = 21/382 (5%)

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           D   E ++  HN +++ Y K G +  A  LF +M  RD  SWNT++S Y   G +  A  
Sbjct: 85  DEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALD 144

Query: 262 LFVEMQEEGVEV-NVITWNTIAGGCLRTGNFKGVLE---LLSRMRTQETYLDSVATVIGL 317
           +FV M++ G  + N  T+  +   C   G  +  L+   LLS+  +Q+      A V  L
Sbjct: 145 IFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDML 204

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYEN----VRNALITMYSRCKDLRHAYILFKMTAE 373
             C   GA+    +         +   +N     RN+++  Y++   + HA  +FK   E
Sbjct: 205 VRC---GAMDFASKQ--------FSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPE 253

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + +++WN ++S  +      E+  +  +M   GV P+  T  S L  CAR+++L+ GK+ 
Sbjct: 254 RDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQL 313

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  ++R  + +    + +++VE+YA+ G   EAK VF  +  R+ V++T LI G+   G 
Sbjct: 314 HVQVIRN-LPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGC 372

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              +++LF +M    +  D   +  ++S C ++  +  G  Q   +    G    +    
Sbjct: 373 FSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGS-QLHSLCLKSGHTRAVVVSN 431

Query: 554 CMVDLYGRAGLLNKAKEIITKM 575
            ++ +Y + G L  A+ I   M
Sbjct: 432 SLISMYAKCGNLQNAELIFNFM 453



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 79/178 (44%), Gaps = 7/178 (3%)

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           +LR  +   +++  N ++  YA+ G + +A  +F  M  RD  ++ ++++GY   G+   
Sbjct: 82  LLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLN 141

Query: 497 ALKLFEEMNKNQIK-PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
           AL +F  M +     P+  T   V+ +C   G   E   Q   + S +      +    +
Sbjct: 142 ALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGW-HEVALQLLGLLSKFDSQDDPDVQTAL 200

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           VD+  R G ++ A +  +++         + L+G  + H     G   A ++ ++ PE
Sbjct: 201 VDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSH-----GVDHALEIFKSMPE 253


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 186/649 (28%), Positives = 323/649 (49%), Gaps = 43/649 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASH-DVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
           +  +    + S+A   F  +R+ +    D  + S AH    CG    +  G+ LH  A+ 
Sbjct: 87  ISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHK--ACGLNSDVNYGELLHGYAVK 144

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            GL  +  +   L+  Y           +     +R  + W  +I+  VR G+  EAL  
Sbjct: 145 TGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVY 204

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           + +M   R+  D++T+   LKAC +   +++GR +H+  +    + S FV N L +MY K
Sbjct: 205 FSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNK 264

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G+++    LF+KM  RD                                   V++W TI
Sbjct: 265 CGKLEYGLTLFEKMSMRD-----------------------------------VVSWTTI 289

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
               ++ G  +  ++   RMR  +   +       +  C+++  ++ G+++H   +    
Sbjct: 290 ITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGL 349

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
               +V N+++TMY++C  L  + ++F     + I++W+++++GY       E+  L   
Sbjct: 350 AASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSW 409

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   G +P    +AS+L  C  +A L+HGK+ H Y+L   + +  ++L ++L+ MY + G
Sbjct: 410 MRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVL-SALINMYCKCG 468

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + EA  +FD     D V++T++I GY   G  R  + LFE++ +  ++PD VT + VLS
Sbjct: 469 SIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLS 528

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSH+GLV  G   F  M+  Y I P  EH+ CM+DL  RAG L+ A+ +I  MP+    
Sbjct: 529 ACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDD 588

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
            +W+TLL AC++H +   G   AE++L+  P  +G ++ +AN+YA+ G W + A +R  M
Sbjct: 589 VVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLM 648

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY---PLLGGLTEL 687
           +  GV K PG +W+   ++   F+  D S+ Q ++IY    LL   TEL
Sbjct: 649 KSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTEL 697



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 215/451 (47%), Gaps = 47/451 (10%)

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKAC 185
           NA  + +  + +  + W  LIS YV     +EAL ++K M+    +R D F      KAC
Sbjct: 67  NARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKAC 126

Query: 186 GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
           G   DV++G ++H   +      S+FV +AL+ MY K G++   RR+F +M  R+ VSW 
Sbjct: 127 GLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWT 186

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            +I+     G  KEA   F EM    VE                                
Sbjct: 187 AIITGLVRAGYNKEALVYFSEMWRSRVE-------------------------------- 214

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
               DS    I L AC+  GAL  G+EIH  A++  +     V N L TMY++C  L + 
Sbjct: 215 ---YDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYG 271

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             LF+  + + +++W ++++    +   E +   F  M  S V PN  T A+++  CA +
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
           A ++ G++ H  IL   +    L + NS++ MYA+ G++  +  +F  M+RRD V+++++
Sbjct: 332 ARIEWGEQLHALILHLGL-AASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTI 390

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           IAGY   G    A +L   M     KP    + +VLSAC +  ++  G++    + SI  
Sbjct: 391 IAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSI-- 448

Query: 545 IFPQLEHFA----CMVDLYGRAGLLNKAKEI 571
               LEH A     ++++Y + G + +A  I
Sbjct: 449 ---GLEHTAMVLSALINMYCKCGSIEEASRI 476



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 169/370 (45%), Gaps = 37/370 (10%)

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G +  ARR+FDKM ++D +SW T+IS Y +     EA  LF  M+ E           
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVE----------- 109

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                LR   F  +L L  +                  AC     +  G+ +HG AV+  
Sbjct: 110 ---SGLRIDPF--ILSLAHK------------------ACGLNSDVNYGELLHGYAVKTG 146

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                 V +AL+ MY++   +     +F     +++++W ++++G       +E+   F 
Sbjct: 147 LVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFS 206

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           EM+RS VE +  T A  L  CA    L +G+E H   +++  F+    + N+L  MY + 
Sbjct: 207 EMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKG-FDVSSFVANTLATMYNKC 265

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           GK+    ++F+ MS RD V++T++I      G+   A++ F  M ++ + P+  T  AV+
Sbjct: 266 GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI 325

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           S C++   +  G+ Q   +    G+   L     ++ +Y + G L  +  I  +M     
Sbjct: 326 SGCANLARIEWGE-QLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDI 384

Query: 581 SAMWATLLGA 590
            + W+T++  
Sbjct: 385 VS-WSTIIAG 393



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN-KNQI 509
           N  ++   ++G +  A+ +FD MS++DE+++T+LI+GY    +   AL LF+ M  ++ +
Sbjct: 53  NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGL 112

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           + D   +     AC  +  V  G+          G+   +   + ++D+Y + G + + +
Sbjct: 113 RIDPFILSLAHKACGLNSDVNYGE-LLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGR 171

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
            +  +MP     +  A + G  +   N     + +E +  +R E   Y   IA
Sbjct: 172 RVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSE-MWRSRVEYDSYTFAIA 223


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 202/668 (30%), Positives = 335/668 (50%), Gaps = 69/668 (10%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYA-SFSLYNNACFLVENSNIRYP--LPWNLLI--S 148
           KQL +  I  GL  +P    +L+ F + S +L      L   +++R P    WN ++   
Sbjct: 20  KQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAH 79

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
           LY+++  + +AL  YK   +   + D++TYP +L+ C   +    GR +H+  + +  + 
Sbjct: 80  LYLQNSPH-QALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDG 138

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            ++V N L+++Y   G V  ARR+F++    D VSWNT+++ Y   G  +EA ++F  M 
Sbjct: 139 DVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMP 198

Query: 268 EE-----------------------------GVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           E                              G E ++++W+ +     +    +  L L 
Sbjct: 199 ERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLF 258

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS-- 356
             M+     +D V  V  L ACS V  +++G+ +HG AV+    +Y +++NALI +YS  
Sbjct: 259 VEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSC 318

Query: 357 ------------------------------RCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
                                         RC  ++ A +LF    EK +++W++M+SGY
Sbjct: 319 GEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGY 378

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
              +C  E+  LF+EM   GV P+   + S +  C  +A L  GK  H YI R  +   +
Sbjct: 379 AQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKL-QVN 437

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           ++L  +L++MY + G V  A  VF  M  +   T+ ++I G  + G    +L +F +M K
Sbjct: 438 VILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKK 497

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
               P+ +T + VL AC H GLV +G+  F  M   + I   ++H+ CMVDL GRAGLL 
Sbjct: 498 TGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLK 557

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A+E+I  MP  P  A W  LLGAC+ HR+  +GE    KL++ +P++ G++VL++N+YA
Sbjct: 558 EAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYA 617

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           + G W  + ++R  M   GV K PGC+ ++A      FL  D ++ Q  +I  +L  +  
Sbjct: 618 SKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAA 677

Query: 687 LMKDAGYV 694
            +K  GYV
Sbjct: 678 KLKIEGYV 685



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 33/239 (13%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS-------LYNNACFLVE--- 133
           C +V  +  G+ +H  A+ +G+E    L   L+  Y+S         ++++   L++   
Sbjct: 280 CSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLIS 339

Query: 134 -NSNIR---------------YPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRI 171
            NS I                Y +P      W+ +IS Y +   ++EAL ++++MQ   +
Sbjct: 340 WNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGV 399

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARR 230
           R D     S + AC  +  +D G+ +H+ I     + ++ +   L+ MY K G V+ A  
Sbjct: 400 RPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALE 459

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +F  M E+   +WN +I   A  G  +++  +F +M++ G   N IT+  + G C   G
Sbjct: 460 VFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMG 518


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/538 (34%), Positives = 292/538 (54%), Gaps = 43/538 (7%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           TY SVL+ C ++  +  GR +HS I +   E    + + LV MY   G +   RR+FDK+
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV--------------EVNVITWNTI 281
                  WN +++ YA  G ++E+  LF  M+E G+              + +VI+WN++
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
             G +  G  +  L+L  +M       D +AT++ +                        
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTD-LATMVSVEL---------------------- 259

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                + N L+ MYS+  +L  A  +F+   E+S+++W SM++GY     ++ S  LF E
Sbjct: 260 ----TLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 315

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M +  + PN +T+A ILP CA +A L+ G+E H +ILR   F+    + N+LV+MY + G
Sbjct: 316 MEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNG-FSLDRHVANALVDMYLKCG 374

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            +  A+ +FD++  +D V++T +IAGYG+ G G  A+  F EM  + I+PD V+ +++L 
Sbjct: 375 ALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILY 434

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSHSGL+ EG   F  M +   I P+ EH+AC+VDL  RAG L+KA + I  MP  P +
Sbjct: 435 ACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDA 494

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
            +W  LL  C+I+ +  + E  AE + E  PEN+GYYVL+AN+YA    W+++ K+R  +
Sbjct: 495 TIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERI 554

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
              G+RK PGC+W++       F+  D+S+  A +I  LL      MK+ G+  K  +
Sbjct: 555 GRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRY 612


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 193/629 (30%), Positives = 330/629 (52%), Gaps = 45/629 (7%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV-LVPKLVTFYASFSLYNNACFLVE 133
           +S A ++     V++   G+  HA  +       P  L   LV  YA     N+A  ++E
Sbjct: 7   NSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILE 66

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA-CGEMMDVD 192
            +  R  + W  LI+  V++G +  AL  +  M S  +R ++FT+P VLKA  G  MD  
Sbjct: 67  LAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTT 126

Query: 193 FGRVVHSCIDACHEW---SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
            G+ +H+   A  E     +FV  ++  MY K G ++ A ++FD+M  R+  +WN  IS 
Sbjct: 127 -GKQLHAL--AVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISN 183

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
               G  +++   F+E+                   LR G                   D
Sbjct: 184 SVLHGRPEDSVIAFIEL-------------------LRVGGKP----------------D 208

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           S+     L ACS    L  G ++HG  +R  YG+  +V N LI  Y +C ++  + ++F 
Sbjct: 209 SITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFD 268

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
              E++ ++W+S+++ Y   +  E+++ LF    +  +EP    ++S+L  CA ++ ++ 
Sbjct: 269 RMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEF 328

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G+      ++ A   +++ + ++LV+MY + G +  A+  F+ M  R+ V++ +L+ GY 
Sbjct: 329 GRSVQALAVK-ACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYA 387

Query: 490 IQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
            QG    A+ L EEM     I P +V+++  LSACS +G +  G K FE M   YG+ P 
Sbjct: 388 HQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPG 447

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
            EH+AC+VDL GRAG++  A + I +MP+ PT ++W  LLGAC++H    +G+ AAEKL 
Sbjct: 448 PEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLF 507

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P++SG +V+++NM+AATG W+++  VR  M+++G++K  G +W+   +    F   D
Sbjct: 508 ELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSRIHMFQAKD 567

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYVVKE 697
            S+ +  EI  +LG L + M+DA   + +
Sbjct: 568 KSHEKDPEIQDILGKLRKEMQDAAGCIAD 596


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/500 (34%), Positives = 279/500 (55%), Gaps = 36/500 (7%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+ + LVSMY K G  + A+RLFD+M  +D VSWN+++S  + +G        F  M+ E
Sbjct: 155 FIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTE 214

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
                                        S  +  E  L SV +     AC+ +GAL  G
Sbjct: 215 -----------------------------SGRQPNEVTLLSVVS-----ACADMGALDEG 240

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           K +HG  V+        V N+LI MY +   L  A  LF+    +S+++WNSM+  + H 
Sbjct: 241 KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHN 300

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
             AE+   LF  M R+G+ P+  T+ ++L  C      +  +  H YI  R  FN  +++
Sbjct: 301 GYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYI-HRCGFNADIII 359

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
             +L+ +YA+ G++  ++ +F+ +  RD + +T+++AGY +   GR A+KLF+ M K  +
Sbjct: 360 ATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGV 419

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           + DHVT   +LSACSHSGLV EG+K FE M+ +Y + P+L+H++CMVDL GR+G L  A 
Sbjct: 420 EVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAY 479

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           E+I  MP  P+S +W  LLGAC+++ N  +G+  AE+LL   P +   Y++++N+Y+A G
Sbjct: 480 ELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAG 539

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W   +KVR  M++  + + PGC++++ GN    F+V D  + ++ EI+  L  L   ++
Sbjct: 540 LWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIR 599

Query: 690 DAGYVVKEEFCSEEEIVEEI 709
           +AG   K EF    +I EE+
Sbjct: 600 EAGCAPKTEFVL-HDIDEEV 618



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 151/328 (46%), Gaps = 45/328 (13%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAA--SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           +   +GRG L     AF R+R  +    ++V L S   ++  C  + AL +GK LH   +
Sbjct: 192 MSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLS---VVSACADMGALDEGKSLHGVVV 248

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
            LG+     +V  L+  Y      + A  L E   +R  + WN ++ ++  +G+  + + 
Sbjct: 249 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 308

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR---VVHSCIDAC-HEWSLFVHNALVS 217
           ++  M+   I  D  T  ++L+AC    D   GR    +H+ I  C     + +  AL++
Sbjct: 309 LFNLMKRAGINPDQATMVALLRAC---TDTGLGRQAESIHAYIHRCGFNADIIIATALLN 365

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           +Y K G+++ +  +F+++ +RD ++W  M++ YA     +EA +LF  M +EGVEV+ +T
Sbjct: 366 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 425

Query: 278 WNTIAGGCLRTG---NFKGVLELLSRMRTQETYLDSVATVIG------------------ 316
           +  +   C  +G     K   E++S +   E  LD  + ++                   
Sbjct: 426 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 485

Query: 317 ------------LGACSHVGALKLGKEI 332
                       LGAC   G ++LGKE+
Sbjct: 486 PMEPSSGVWGALLGACRVYGNVELGKEV 513



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 170/379 (44%), Gaps = 27/379 (7%)

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
           G+ G +++   +F++ L R AV WN+++S     G      + F     + +      +N
Sbjct: 46  GQRGGLEI---VFNQQLTRLAVPWNSIVSPVRC-GTSISHNRSFAFRHTDLIPKQFKRFN 101

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           T  G C+    F+   + +      ++ + ++++   +  CS          IH   ++ 
Sbjct: 102 TNKGCCI----FREASQFIVVYSIVQSLVFAISSCTSVSYCS---------AIHARVIKS 148

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                  + + L++MY +      A  LF     K +++WNS++SG +           F
Sbjct: 149 LNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAF 208

Query: 400 -REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
            R    SG +PN VT+ S++  CA +  L  GK  H  +++  M  +  ++ NSL+ MY 
Sbjct: 209 CRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV-NSLINMYG 267

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           + G +  A  +F+ M  R  V++ S++  +   G     + LF  M +  I PD  TMVA
Sbjct: 268 KLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVA 327

Query: 519 VLSACSHSGLVVEGQKQFERMTSIY---GIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           +L AC+ +GL     +Q E + +     G    +     +++LY + G LN +++I  ++
Sbjct: 328 LLRACTDTGL----GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI 383

Query: 576 PYTPTSAMWATLLGACQIH 594
                 A W  +L    +H
Sbjct: 384 KDRDRIA-WTAMLAGYAVH 401


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 172/501 (34%), Positives = 280/501 (55%), Gaps = 38/501 (7%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ-E 268
           F+ + LVSMY K G  + A+RLFD+M  +D VSWN+++S  + +G        F  M+ E
Sbjct: 98  FIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTE 157

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
            G + N +T  ++                                   + AC+ +GAL  
Sbjct: 158 SGRQPNEVTLLSV-----------------------------------VSACADMGALDE 182

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GK +HG  V+        V N+LI MY +   L  A  LF+    +S+++WNSM+  + H
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 242

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
              AE+   LF  M R+G+ P+  T+ ++L  C      +  +  H YI  R  FN  ++
Sbjct: 243 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYI-HRCGFNADII 301

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           +  +L+ +YA+ G++  ++ +F+ +  RD + +T+++AGY +   GR A+KLF+ M K  
Sbjct: 302 IATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG 361

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           ++ DHVT   +LSACSHSGLV EG+K FE M+ +Y + P+L+H++CMVDL GR+G L  A
Sbjct: 362 VEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDA 421

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
            E+I  MP  P+S +W  LLGAC+++ N  +G+  AE+LL   P +   Y++++N+Y+A 
Sbjct: 422 YELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAA 481

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           G W   +KVR  M++  + + PGC++++ GN    F+V D  + ++ EI+  L  L   +
Sbjct: 482 GLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKI 541

Query: 689 KDAGYVVKEEFCSEEEIVEEI 709
           ++AG   K EF    +I EE+
Sbjct: 542 REAGCAPKTEFVL-HDIDEEV 561



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 151/328 (46%), Gaps = 45/328 (13%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAA--SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           +   +GRG L     AF R+R  +    ++V L S   ++  C  + AL +GK LH   +
Sbjct: 135 MSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLS---VVSACADMGALDEGKSLHGVVV 191

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
            LG+     +V  L+  Y      + A  L E   +R  + WN ++ ++  +G+  + + 
Sbjct: 192 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 251

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR---VVHSCIDAC-HEWSLFVHNALVS 217
           ++  M+   I  D  T  ++L+AC    D   GR    +H+ I  C     + +  AL++
Sbjct: 252 LFNLMKRAGINPDQATMVALLRAC---TDTGLGRQAESIHAYIHRCGFNADIIIATALLN 308

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           +Y K G+++ +  +F+++ +RD ++W  M++ YA     +EA +LF  M +EGVEV+ +T
Sbjct: 309 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 368

Query: 278 WNTIAGGCLRTG---NFKGVLELLSRMRTQETYLDSVATVIG------------------ 316
           +  +   C  +G     K   E++S +   E  LD  + ++                   
Sbjct: 369 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 428

Query: 317 ------------LGACSHVGALKLGKEI 332
                       LGAC   G ++LGKE+
Sbjct: 429 PMEPSSGVWGALLGACRVYGNVELGKEV 456



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 13/287 (4%)

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
           + V  + +C+ V        IH   ++        + + L++MY +      A  LF   
Sbjct: 67  SLVFAISSCTSVSYCS---AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 123

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLF-REMFRSGVEPNYVTIASILPLCARVANLQHG 430
             K +++WNS++SG +           F R    SG +PN VT+ S++  CA +  L  G
Sbjct: 124 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 183

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H  +++  M  +  ++ NSL+ MY + G +  A  +F+ M  R  V++ S++  +  
Sbjct: 184 KSLHGVVVKLGMSGKAKVV-NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 242

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY---GIFP 547
            G     + LF  M +  I PD  TMVA+L AC+ +GL     +Q E + +     G   
Sbjct: 243 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL----GRQAESIHAYIHRCGFNA 298

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            +     +++LY + G LN +++I  ++      A W  +L    +H
Sbjct: 299 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIA-WTAMLAGYAVH 344


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 278/500 (55%), Gaps = 36/500 (7%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+ + LVSMY K G  + A+RLFD+M  RD VSWN+++S  + +G        F  M+ E
Sbjct: 175 FIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTE 234

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
                                        S  +  E  L SV +     AC+ +GAL  G
Sbjct: 235 -----------------------------SGRQPNEVTLLSVVS-----ACAXMGALDEG 260

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           K +HG  V+        V N+LI MY +   L  A  LF+    +S+++WNSM+  + H 
Sbjct: 261 KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHN 320

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
             AE+   LF  M R+G+ P+  T+ ++L  C      +  +  H YI  R  FN  +++
Sbjct: 321 GYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYI-HRCGFNADIII 379

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
             +L+ +YA+ G++  ++ +F+ +  RD + +T+++AGY +   GR A+KLF+ M K  +
Sbjct: 380 ATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGV 439

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           + DHVT   +LSACSHSGLV EG+K FE M+ +Y + P+L+H++CMVDL GR+G L  A 
Sbjct: 440 EVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAY 499

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           E+I  MP  P+S +W  LLGAC+++ N  +G+  AE+LL   P +   Y++++N+Y+A G
Sbjct: 500 ELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAG 559

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W   +KVR  M++  + + PGC++++ GN    F+V D  + ++ EI+  L  L   + 
Sbjct: 560 LWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIX 619

Query: 690 DAGYVVKEEFCSEEEIVEEI 709
           +AG   K EF    +I EE+
Sbjct: 620 EAGCAPKTEFVL-HDIDEEV 638



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 151/328 (46%), Gaps = 45/328 (13%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAA--SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           +   +GRG L     AF R+R  +    ++V L S   ++  C  + AL +GK LH   +
Sbjct: 212 MSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLS---VVSACAXMGALDEGKSLHGVVV 268

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
            LG+     +V  L+  Y      + A  L E   +R  + WN ++ ++  +G+  + + 
Sbjct: 269 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 328

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR---VVHSCIDAC-HEWSLFVHNALVS 217
           ++  M+   I  D  T  ++L+AC    D   GR    +H+ I  C     + +  AL++
Sbjct: 329 LFNLMKRAGINPDQATMVALLRAC---TDTGLGRQAESIHAYIHRCGFNADIIIATALLN 385

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           +Y K G+++ +  +F+++ +RD ++W  M++ YA     +EA +LF  M +EGVEV+ +T
Sbjct: 386 LYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 445

Query: 278 WNTIAGGCLRTG---NFKGVLELLSRMRTQETYLDSVATVIG------------------ 316
           +  +   C  +G     K   E++S +   E  LD  + ++                   
Sbjct: 446 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 505

Query: 317 ------------LGACSHVGALKLGKEI 332
                       LGAC   G ++LGKE+
Sbjct: 506 PMEPSSGVWGALLGACRVYGNVELGKEV 533



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 139/304 (45%), Gaps = 15/304 (4%)

Query: 297 LLSRMRTQETYLDSV--ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
            L ++       DS+  + V  + +C+ V        IH   ++        + + L++M
Sbjct: 127 FLGKLHNSSLLADSIVQSLVFAISSCTSVSYCS---AIHARVIKSLNYSDGFIGDRLVSM 183

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF-REMFRSGVEPNYVT 413
           Y +      A  LF     + +++WNS++SG +           F R    SG +PN VT
Sbjct: 184 YFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVT 243

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           + S++  CA +  L  GK  H  +++  M  +  ++ NSL+ MY + G +  A  +F+ M
Sbjct: 244 LLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVV-NSLINMYGKLGFLDAASQLFEEM 302

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             R  V++ S++  +   G     + LF  M +  I PD  TMVA+L AC+ +GL     
Sbjct: 303 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL----G 358

Query: 534 KQFERMTSIY---GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +Q E + +     G    +     +++LY + G LN +++I  ++    T A W  +L  
Sbjct: 359 RQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIA-WTAMLAG 417

Query: 591 CQIH 594
             +H
Sbjct: 418 YAVH 421


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 287/554 (51%), Gaps = 39/554 (7%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-D 202
           N LI    ++G   +AL V  Q  S        TY  ++  CG    +  G  VH  I D
Sbjct: 50  NQLIQSLCKEGKLKQALRVLSQESS----PSQQTYELLILCCGHRSSLSDGLRVHRHILD 105

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              +   F+   L+ MY   G VD AR++FDK  +R    WN +  A    G  +E   L
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           + +M   GVE +  T+  +   C+ +                               C+ 
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVAS------------------------------ECT- 194

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
              L  GKEIH    R  Y  +  +   L+ MY+R   + +A  +F     +++++W++M
Sbjct: 195 ADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAM 254

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVE--PNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           ++ Y     A E+   FREM     +  PN VT+ S+L  CA +A L+ G+  H YILRR
Sbjct: 255 IACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRR 314

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            + +  L + ++LV MY R GK+   + VFD M  RD V++ SLI+ YG+ G GR A+++
Sbjct: 315 GL-DSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQI 373

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           FEEM  N   P  VT V+VL ACSH GLV EG++ FE M   +GI PQ+EH+ACMVDL G
Sbjct: 374 FEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLG 433

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           RA  L++A +++  M   P   +W +LLG+C+IH N  + E A+ +L    P+N+G YVL
Sbjct: 434 RANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVL 493

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           +A++YA    WD++ +V+  +   G++K+PG  W++       F+  D  N   ++I+  
Sbjct: 494 LADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAF 553

Query: 681 LGGLTELMKDAGYV 694
           L  L E MK+ GY+
Sbjct: 554 LVKLAEDMKEKGYI 567



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/508 (25%), Positives = 220/508 (43%), Gaps = 60/508 (11%)

Query: 21  FIPKKWKQP------INNEHI-----MRINLLETLKDFAGRGNLSKAFEAFTRIRITAAS 69
           F+P+   +P      +NN  I      +I+  + ++     G L +A      +R+ +  
Sbjct: 19  FLPRSPLKPPLCSVALNNLSISSGAGAKISNNQLIQSLCKEGKLKQA------LRVLSQE 72

Query: 70  HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
                 ++  +I CCG   +L+ G ++H   +  G +++P L  KL+  Y+     + A 
Sbjct: 73  SSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYAR 132

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC-GEM 188
            + + +  R    WN L       G   E L +Y +M    +  D FTY  VLKAC    
Sbjct: 133 KVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASE 192

Query: 189 MDVDF---GRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
              D    G+ +H+ +    +   +++   LV MY +FG VD A  +F+ M  R+ VSW+
Sbjct: 193 CTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWS 252

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            MI+ YA  G   EA + F EM  E                                 T+
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMTE---------------------------------TK 279

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
           ++  +SV  V  L AC+ + AL+ G+ IHG  +R        V +AL+TMY RC  L   
Sbjct: 280 DSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVG 339

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F    ++ +++WNS++S Y       ++  +F EM  +G  P  VT  S+L  C+  
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHE 399

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE-AKSVFDLMSRRDEVTYTS 483
             ++ GK     + R       +  +  +V++  R+ ++ E AK V D+ +      + S
Sbjct: 400 GLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGS 459

Query: 484 LIAGYGIQGE----GRVALKLFEEMNKN 507
           L+    I G      R + +LF    KN
Sbjct: 460 LLGSCRIHGNVELAERASRRLFALEPKN 487



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 165/341 (48%), Gaps = 54/341 (15%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L +GK++HA     G   +  ++  LV  YA F   + A ++     +R  + W+ +I+ 
Sbjct: 198 LTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIAC 257

Query: 150 YVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHE 206
           Y ++G   EAL  +++M  +++    ++ T  SVL+AC  +  ++ GR++H  I     +
Sbjct: 258 YAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLD 317

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
             L V +ALV+MYG+ G++DV +R+FD+M +RD VSWN++IS+Y   G  ++A Q+F EM
Sbjct: 318 SILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEM 377

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
              G     +T+ ++                                   LGACSH G +
Sbjct: 378 LANGASPTPVTFVSV-----------------------------------LGACSHEGLV 402

Query: 327 KLGKEIHGSAVRGCYGEYENVRN--ALITMYSRCKDLRHAYILFK-MTAEKSIITWNSML 383
           + GK +  S  R  +G    V +   ++ +  R   L  A  + + M  E     W S+L
Sbjct: 403 EEGKRLFESMWRD-HGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLL 461

Query: 384 SG---YTHLDCAEESAFLFREMFRSGVEP----NYVTIASI 417
                + +++ AE ++   R +F   +EP    NYV +A I
Sbjct: 462 GSCRIHGNVELAERAS---RRLF--ALEPKNAGNYVLLADI 497


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 173/522 (33%), Positives = 286/522 (54%), Gaps = 28/522 (5%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLER----DAVSWNTMISAYASKGL--WKEAFQLF 263
           F ++  +S+  +  +    +++  +ML      D  S + +I+A A         A Q+F
Sbjct: 33  FANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVF 92

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET-YLDSVATVIGLGACSH 322
            ++       N+ TWNT+      + N    L +  RM  Q   + D       + A S 
Sbjct: 93  DQIPHP----NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +  L  GK  HG  ++   G    + N+LI  Y++C +L   Y +F     + +++WNSM
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSM 208

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++ +    C EE+  LF+EM    V+PN +T+  +L  CA+ ++ + G+  H YI  R  
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI-ERNR 267

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG------------I 490
             E L L N++++MY + G V +AK +FD M  +D V++T+++ GY             +
Sbjct: 268 IXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAM 327

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G G+ A+ LF +M ++++KP+ VT   +L ACSH GLV EG+  F +M  +YG+ P ++
Sbjct: 328 HGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVK 387

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ACMVD+ GRAGLL +A E+I KMP  P +++W  LLGAC IH N  + E A  +L+E 
Sbjct: 388 HYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIEL 447

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P N G YVL++N+YA  G WD+++ +R  MRD+G++K PGC+ ++   +   FLV D S
Sbjct: 448 EPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNS 507

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKE----EFCSEEEIVEE 708
           +  A++IY  L  +   ++  GYV  +    +   EE++ E+
Sbjct: 508 HPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQ 549



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 189/422 (44%), Gaps = 78/422 (18%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C + K L   KQ+HA  +  GL  +P    +L+T  A+ S + +  +  +  + + 
Sbjct: 41  LIDQCSETKQL---KQIHAQMLRTGLFFDPFSASRLIT-AAALSPFPSLDYAQQVFD-QI 95

Query: 140 PLP----WNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDF 193
           P P    WN LI  Y       ++L ++ +M  QS     D FT+P ++KA  E+ ++  
Sbjct: 96  PHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDF-PDKFTFPFLIKAASELEELFT 154

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G+  H   I       +F+ N+L+  Y K G++ +  R+F     RD VSWN+MI+A+  
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQ 214

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G  +EA +LF EM+ + V+ N IT   +   C +  +F                     
Sbjct: 215 GGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDF--------------------- 253

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
                         + G+ +H    R    E   + NA++ MY++C  +  A  LF    
Sbjct: 254 --------------EFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMP 299

Query: 373 EKSIITWNSMLSGYTHL---DCAE---------ESAFLFREMFRSGVEPNYVTIASILPL 420
           EK I++W +ML GY  +   D A+         ++  LF +M    V+PN VT  +IL  
Sbjct: 300 EKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCA 359

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSL---------VEMYARSGKVPEAKSVFD 471
           C+ V  ++ G+ F         FN+  L++  L         V++  R+G + EA  + +
Sbjct: 360 CSHVGLVEEGRTF---------FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIE 410

Query: 472 LM 473
            M
Sbjct: 411 KM 412


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 180/571 (31%), Positives = 301/571 (52%), Gaps = 38/571 (6%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           ++AL +G ++H  A   G++ +  +   ++T YA     + A  L +    R  + W+ +
Sbjct: 1   MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAI 60

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACH 205
           I+ +V+ G+  EAL +++ MQ+  ++ +     S L AC E+  +  G+ +H C + A  
Sbjct: 61  IAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANV 120

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           +  + V  ALVSMY K G   +A  LF++M  +D V+WN MI+ YA  G    A ++F +
Sbjct: 121 DLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHK 180

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           +Q   +  N             +G   G+L   + +      LD        G+C     
Sbjct: 181 LQLSELNPN-------------SGTMVGLLPAFALLND----LDQ-------GSC----- 211

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA-EKSIITWNSMLS 384
                 IHG  ++  +    +V+ ALI MY++C  L  A  LF  T   K  ++WN M++
Sbjct: 212 ------IHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIA 265

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY H   A ++   F +M    ++PN VTI ++LP  A ++ L+ G   H Y++R   F 
Sbjct: 266 GYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMG-FQ 324

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
               + N L++MYA+ G +  ++ +F  M  +D V++  ++AGY + G G  A++LF  M
Sbjct: 325 SKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRM 384

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
             ++I+ D  + + VLSAC H+GL+ EG+K F+ M+  + + P LEH+ACM DL GRAGL
Sbjct: 385 QDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGL 444

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
            N+  ++I  MP  P + +W  LLGA  +H N  + E+A   L +   +N  +Y  ++N 
Sbjct: 445 FNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAEFALHHLDKLEHKNLTHYAALSNT 504

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           YA +G W  +   R+ +   G+RK PG +WV
Sbjct: 505 YARSGRWADVGNTRSKITKTGLRKSPGYSWV 535



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 185/443 (41%), Gaps = 44/443 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C +V +L  GK +H CA+   ++ +  +   LV+ YA    +  A  L      +  + W
Sbjct: 99  CAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTW 158

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+ Y + G    AL ++ ++Q   +  ++ T   +L A   + D+D G  +H  I  
Sbjct: 159 NAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIK 218

Query: 204 C-HEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQ 261
           C  E    V  AL+ MY K G +  A  LF +    +D VSWN MI+ Y   G   +AF 
Sbjct: 219 CGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFS 278

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
            F +M+ E ++ N++T  T+                                   L A +
Sbjct: 279 AFCQMKLENIQPNIVTIVTV-----------------------------------LPAVA 303

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
           H+ AL+ G  +H   +R  +     V N LI MY++C  L H+  +F     K  ++WN 
Sbjct: 304 HLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNV 363

Query: 382 MLSGYT---HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           ML+GY       CA E   LF  M  S +  +  +  ++L  C     +  G++    + 
Sbjct: 364 MLAGYAVHGRGSCAIE---LFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMS 420

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           ++      L  +  + ++  R+G   E   +   M    +      + G        V L
Sbjct: 421 KQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTM-HSNVQL 479

Query: 499 KLFEEMNKNQIKPDHVTMVAVLS 521
             F   + ++++  ++T  A LS
Sbjct: 480 AEFALHHLDKLEHKNLTHYAALS 502


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 202/705 (28%), Positives = 339/705 (48%), Gaps = 51/705 (7%)

Query: 12  GLSVSQLEKFIPKKWKQPINNEHIMR-------INLLETLKDFAGRGNLSKAFEAFTRIR 64
           G+  S ++ ++  KW   ++   +         +     L  +   G LS   E F R+R
Sbjct: 140 GVGTSLVDMYM--KWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR 197

Query: 65  ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL 124
                 + V  +FA ++        +  G+++HA ++  G      +   L+  YA   L
Sbjct: 198 AEGVWPNSV--TFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGL 255

Query: 125 YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA 184
              A  +      R  + WN L++  V +G   EAL ++   +S        TY +V+K 
Sbjct: 256 VEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKL 315

Query: 185 CGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
           C  +  +   R +HS +             L   +  +G V  A                
Sbjct: 316 CANIKQLGLARQLHSSV-------------LKRGFHSYGNVMTA---------------- 346

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            ++ AY+  G    A  +F+ M       NV++W  +  GC++ G+      L SRMR  
Sbjct: 347 -LMDAYSKAGQLGNALDIFLLMSGSQ---NVVSWTAMINGCIQNGDVPLAAALFSRMRED 402

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
               +       L A        L  +IH   ++  Y     V  AL+  YS+  +   A
Sbjct: 403 GVAPNDFTYSTILTA----SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEA 458

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR- 423
             +FKM  +K +++W++ML+ Y     ++ +  +F +M   G++PN  TI+S++  CA  
Sbjct: 459 LSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASP 518

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
            A +  G++FH   ++    ++ L + ++LV MYAR G +  A+ +F+  + RD V++ S
Sbjct: 519 TAGVDLGRQFHAISIKHRC-HDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNS 577

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +++GY   G  + AL +F +M    I+ D VT ++V+  C+H+GLV EGQ+ F+ M   Y
Sbjct: 578 MLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDY 637

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           GI P +EH+ACMVDLY RAG L++A  +I  M +     +W TLLGAC++H+N  +G+ A
Sbjct: 638 GITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLA 697

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
           AEKLL   P +S  YVL++N+Y+A G W +  +VR  M    V+K  GC+W+   N    
Sbjct: 698 AEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHS 757

Query: 664 FLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           F+  D S+  +++IY  L  +T  +K  GY     F +  E+ EE
Sbjct: 758 FIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSF-ALHEVAEE 801



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 147/542 (27%), Positives = 258/542 (47%), Gaps = 46/542 (8%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R  L   L D A RG++ +A + F  +        V   +   ++  CG V     GKQL
Sbjct: 67  RNTLDHALFDHARRGSVHQALDHFLDVHRCHGGR-VGGGALVGVLKVCGSVPDRVLGKQL 125

Query: 97  HACAIALGLEKNPVLV-PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           H   I  G ++  V V   LV  Y  +    +   + E    R  + W  L++ Y++DG 
Sbjct: 126 HGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGA 185

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVHN 213
            ++ + ++ +M++  +  ++ T+ SVL        VD GR VH  S    C   ++FV N
Sbjct: 186 LSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCS-TVFVCN 244

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           +L++MY K G V+ AR +F  M  RD VSWNT+++     G   EA QLF + +      
Sbjct: 245 SLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSS---- 300

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
             IT                       M TQ TY    ATVI L  C+++  L L +++H
Sbjct: 301 --IT-----------------------MLTQSTY----ATVIKL--CANIKQLGLARQLH 329

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCA 392
            S ++  +  Y NV  AL+  YS+   L +A  +F  M+  +++++W +M++G       
Sbjct: 330 SSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDV 389

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
             +A LF  M   GV PN  T ++IL   A VA+L    + H  ++ +  +    ++  +
Sbjct: 390 PLAAALFSRMREDGVAPNDFTYSTILT--ASVASLP--PQIHAQVI-KTNYECTSIVGTA 444

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L+  Y++     EA S+F ++ ++D V++++++  Y   G+   A  +F +M  + +KP+
Sbjct: 445 LLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPN 504

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
             T+ +V+ AC+     V+  +QF  ++  +     L   + +V +Y R G +  A+ I 
Sbjct: 505 EFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIF 564

Query: 573 TK 574
            +
Sbjct: 565 ER 566



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           +  +L +C  V +   GK+ H   +R       + +  SLV+MY +   V + + VF+ M
Sbjct: 106 LVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAM 165

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            +R+ VT+TSL+ GY   G     ++LF  M    + P+ VT  +VLS  +  G+V  G+
Sbjct: 166 PKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGR 225

Query: 534 KQFERMTSIYGIFPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +   +    +G    +  F C  ++++Y + GL+ +A+ +   M  T     W TL+  
Sbjct: 226 RVHAQSVK-FGCCSTV--FVCNSLMNMYAKCGLVEEARVVFCGME-TRDMVSWNTLMAG 280


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  318 bits (816), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 192/610 (31%), Positives = 326/610 (53%), Gaps = 37/610 (6%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           K+L   +Q H+  ++LGL +N  L  KL+  YA      ++  + ++   +    WN LI
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHE 206
           +  V++  Y EA  ++ QM S  +  D+FT  ++ K   E+  +  G+ +H   I     
Sbjct: 97  NGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFV 156

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG---LWKEAFQLF 263
               V N+++SMY K G  D +R++FD+M  R++ SWN +I+ YA  G     +E ++  
Sbjct: 157 SDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFV 216

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            +MQ + V  +  T +++   C       G +      R    Y+     V+GL +  H+
Sbjct: 217 KQMQMDEVRPDAYTISSLLPLC------DGDMGKWDYGRELHCYIVKNELVLGLDSDVHL 270

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           G                          LI MYSR   +     +F     +++ +W +M+
Sbjct: 271 GC------------------------CLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMI 306

Query: 384 SGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +GY     ++E+  LFR+M    GVEPN V++ S+LP C+  + L  G++ H + +R+ +
Sbjct: 307 NGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKEL 366

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLF 501
            NE + L N+L++MY++ G +  A+ VF+  S  +D ++++S+I+GYG+ G+G+ A+ L+
Sbjct: 367 NNE-VSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 425

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           ++M +  I+PD +T V +LSAC  SGLV EG   +  + + YGI P LE  AC+VD+ GR
Sbjct: 426 DKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGR 485

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG L++A + I  +P  P  ++W  L+    IH +  + E A   L++  P+N   YV I
Sbjct: 486 AGQLDRALDFIKAIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSI 545

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+YA++  WD +A+VR  M+D  +RK+PGC+W+   N    F V D ++  +  IY +L
Sbjct: 546 SNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINNKTHCFYVADKAHPSSTSIYNML 605

Query: 682 GGLTELMKDA 691
             L   M DA
Sbjct: 606 DDLLLTMNDA 615



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 196/427 (45%), Gaps = 54/427 (12%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           ++AF+ F ++     S DV+ D F  + +     ++ AL  GK +H  +I  G   + V+
Sbjct: 106 NEAFQLFNQM----CSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVV 161

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG---FYAEALCVYKQMQS 168
              +++ Y     ++ +  + +   IR    WN+LI+ Y   G   F  E     KQMQ 
Sbjct: 162 ANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQM 221

Query: 169 RRIRGDNFTYPSVLKAC-GEMMDVDFGRVVHSCIDACHEWSLFVHN------ALVSMYGK 221
             +R D +T  S+L  C G+M   D+GR +H C    +E  L + +       L+ MY +
Sbjct: 222 DEVRPDAYTISSLLPLCDGDMGKWDYGRELH-CYIVKNELVLGLDSDVHLGCCLIDMYSR 280

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE-EGVEVNVITWNT 280
             +V V RR+FD+M  R+  SW  MI+ Y   G   EA  LF +MQ  +GVE N      
Sbjct: 281 SNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPN------ 334

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                                         V+ V  L ACS    L  G++IHG AVR  
Sbjct: 335 -----------------------------RVSLVSVLPACSSFSGLLSGRQIHGFAVRKE 365

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAE-KSIITWNSMLSGYTHLDCAEESAFLF 399
                ++ NALI MYS+C  L  A  +F+  +  K  I+W+SM+SGY      +E+  L+
Sbjct: 366 LNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 425

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M ++G+ P+ +T   IL  C R   +  G   +  ++        L +   +V+M  R
Sbjct: 426 DKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGR 485

Query: 460 SGKVPEA 466
           +G++  A
Sbjct: 486 AGQLDRA 492


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 199/607 (32%), Positives = 317/607 (52%), Gaps = 32/607 (5%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           QLHA     GL  +     +L+ F A  S                P P   ++   +R G
Sbjct: 53  QLHALLTVTGLAAHRFPASRLLAFCA-LSTPPRLAHAAAILARASPGPNAYMLGTMMR-G 110

Query: 155 FY-----AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG------RVVHSCIDA 203
           F      A AL +++++   R+  D  T+   +KA     + + G        +H     
Sbjct: 111 FLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAALK 170

Query: 204 CH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           C     S+ V NALV  Y     +D A ++FD+M ERD VSW T++  YA  GL  EA++
Sbjct: 171 CGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWR 230

Query: 262 LFVEMQE-EGVEVNVITWNTIAGGCLRTGNFK-GVLELLSRMRTQETYLDSV----ATVI 315
           LF  M    G+  N +T         + G    G++  L +  T+     SV    A V 
Sbjct: 231 LFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIM--LHKYVTEGGVARSVNLDNALVD 288

Query: 316 GLGACSHVGALKLGKEI-HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             G C   G ++  +E+  G  V+  Y        +++  Y++C DL  A  LFK    +
Sbjct: 289 MFGKC---GCVRYAREVFDGMEVKDVYS-----WTSMVNAYAKCGDLESAEQLFKDMPRR 340

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           ++++W+ M++ Y+ L+  EE+ +LFREM  +GV+P   T+ S+L  CA++  L  G+  +
Sbjct: 341 NVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIY 400

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              +        + L N+L++M+A+ G V EA  +FD M+ R+ V++ ++I  + + G+ 
Sbjct: 401 ENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQS 460

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             A++LFE++    I PD +T + +L++CSHSGLV EG++ F+ M   Y I P++EH+AC
Sbjct: 461 EEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYAC 520

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           M+DL G+ GLL +A E+   MP     A W  LL AC++H N  IG   A+KL+E  P +
Sbjct: 521 MIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSD 580

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           SG YVL++ +YA+   WD++  +R  MRD GV+K PGC+ ++    F  FLV D S+  +
Sbjct: 581 SGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVSHACS 640

Query: 675 QEIYPLL 681
           +EIY  L
Sbjct: 641 EEIYSAL 647


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 188/595 (31%), Positives = 307/595 (51%), Gaps = 41/595 (6%)

Query: 66  TAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125
            AA  DVVL S A  +  C +      G++LH C +      +  ++  LV  YA     
Sbjct: 118 AAAQADVVL-SLA--LKACVRSADFRYGRRLH-CDVVKAGGADGFVMNSLVDMYAKAGDL 173

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
            NA  + +    R  + W  ++S  +++G   E L ++ +M+   +    +T  SVL AC
Sbjct: 174 ENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAAC 233

Query: 186 GEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
             +  +  GR +H S I      + F+  +L+ MY K  +V+ ARR+FD++   D V W 
Sbjct: 234 AMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWT 293

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            MI  Y       +A QLF+  +   +  N +T                           
Sbjct: 294 AMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVT--------------------------- 326

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                 +ATVI   A + +  L LG+ +H   V+    E + VRNAL+ MY++C+ L  A
Sbjct: 327 ------IATVIS--ASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEA 378

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F     K ++ WNSM++GY+    A ES  LF  M   G+ P+ +++ + L  C  +
Sbjct: 379 NSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCL 438

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
           A+L  GK FH Y ++ A F  ++ +  +L+ +Y++   +P A+ VF+ M+ R+ VT++++
Sbjct: 439 ADLHIGKGFHTYAIKYA-FMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAM 497

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           I GYG+QG+   ++ LF EM K  I P+ V   ++LSACSH+G+V  G++ F+ M   + 
Sbjct: 498 IGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFN 557

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           I P ++H+ACMVD+  RAG L +A E I  MP     ++W + L  C++H     GE A 
Sbjct: 558 ITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAI 617

Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659
           +K+    PE   +YVL++N+Y + G WDK   +R  M++ G+ K+PGC+ V   N
Sbjct: 618 KKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKLPGCSSVGHEN 672


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 192/575 (33%), Positives = 307/575 (53%), Gaps = 56/575 (9%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVD---VAR 229
           D+  +PSVLK+C  M D+ FG  VH C I     + L+  NAL++MY KF  ++   V R
Sbjct: 9   DHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEGGVQR 68

Query: 230 RLFDKML-----------------------ERDA-----VSWNTMISAYASKGLWKEAF- 260
               KML                       ER A        N M +       +K+ F 
Sbjct: 69  FCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQVNTYKKVFD 128

Query: 261 -----QLFVEMQEEGVEV-------------NVITWNTIAGGCLRTGNFKGVLELLSRMR 302
                 ++ + ++E   +             ++++WNT+  G  + G  +  L ++  M 
Sbjct: 129 EGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG 188

Query: 303 TQETYLDS--VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
             +   DS  +++V+ + A  +V  LK GKEIHG A+R  Y     + ++LI MY++C  
Sbjct: 189 NADLRPDSFTLSSVLPIFA-EYVNLLK-GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTR 246

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           +  +  +F M  +   I+WNS+++G       +E    F++M  + ++PN+V+ +SI+P 
Sbjct: 247 VDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPA 306

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           CA +  L  GK+ H YI+ R+ F+ ++ + ++LV+MYA+ G +  A+ +FD M   D V+
Sbjct: 307 CAHLTTLHLGKQLHGYII-RSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVS 365

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           +T++I GY + G    A+ LF+ M    +KP++V  +AVL+ACSH+GLV E  K F  MT
Sbjct: 366 WTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMT 425

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
             Y I P LEH+A + DL GR G L +A E I+ M   PT ++W+TLL AC++H+N  + 
Sbjct: 426 QDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELA 485

Query: 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           E  ++KL    P+N G YVL++N+Y+A G W    K+R  MRD G++K P C+W++  N 
Sbjct: 486 EKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNK 545

Query: 661 FSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
              F+  D S+     I   L  L E M+  GYV+
Sbjct: 546 VHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVL 580



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 187/390 (47%), Gaps = 47/390 (12%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + WN +IS   ++G + +AL + ++M +  +R D+FT  SVL    E +++  G+ +
Sbjct: 159 RDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEI 218

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H   I   ++  +F+ ++L+ MY K  +VD + R+F  + + D +SWN++I+     G++
Sbjct: 219 HGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMF 278

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
            E  + F +M    ++ N +++++I                                   
Sbjct: 279 DEGLKFFQQMLIAKIKPNHVSFSSI----------------------------------- 303

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           + AC+H+  L LGK++HG  +R  +     + +AL+ MY++C ++R A  +F       +
Sbjct: 304 MPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDM 363

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W +M+ GY     A ++  LF+ M   GV+PNYV   ++L  C+    +    ++   
Sbjct: 364 VSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNS 423

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAG----YGIQ 491
           + +       L  + ++ ++  R G++ EA + + D+        +++L+A       I+
Sbjct: 424 MTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIE 483

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
              +V+ KLF       + P ++    +LS
Sbjct: 484 LAEKVSKKLF------TVDPQNIGAYVLLS 507



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 13/207 (6%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------W 143
           L +GK++H  AI  G + +  +   L+  YA  +  +++C       + Y LP      W
Sbjct: 212 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSC------RVFYMLPQHDGISW 265

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
           N +I+  V++G + E L  ++QM   +I+ ++ ++ S++ AC  +  +  G+ +H   I 
Sbjct: 266 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 325

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           +  + ++F+ +ALV MY K G +  AR +FDKM   D VSW  MI  YA  G   +A  L
Sbjct: 326 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 385

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTG 289
           F  M+ EGV+ N + +  +   C   G
Sbjct: 386 FKRMEVEGVKPNYVAFMAVLTACSHAG 412



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 95/234 (40%), Gaps = 37/234 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+ I+  C  +  L  GKQLH   I    + N  +   LV  YA       A ++ +  
Sbjct: 299 SFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKM 358

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +   + W  +I  Y   G   +A+ ++K+M+   ++ +   + +VL AC     VD   
Sbjct: 359 ELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAW 418

Query: 196 VVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
              + +   +     L  + A+  + G+ G+++ A      M +E     W+T+++A   
Sbjct: 419 KYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRV 478

Query: 250 -------------------------------YASKGLWKEAFQLFVEMQEEGVE 272
                                          Y++ G WK+A +L + M+++G++
Sbjct: 479 HKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMK 532


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 190/627 (30%), Positives = 316/627 (50%), Gaps = 53/627 (8%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           +V + F  ++  C   + L    Q+ A  +  GLE N  + P  +T  + F   ++A  L
Sbjct: 10  IVEEKFITLLRSCKNYERL---HQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKL 66

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG--DNFTYPSVLKACGEMM 189
            +         WN +   Y+++G + + + ++ ++   RI G  + FT+P ++K+CG++ 
Sbjct: 67  FDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELN--RIAGMPNCFTFPMIIKSCGKLE 124

Query: 190 DVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
            V  G  VH C      + + FV  +L+ MY K G V+ A ++F +M ER+ V W  +I+
Sbjct: 125 GVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIIN 184

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            Y   G      +LF    +   E +V+ W+ +  G + + N     EL  +M  ++T  
Sbjct: 185 GYILCGDVVSGRRLF----DLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDT-- 238

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                            +     ++G AV G    +E V                    F
Sbjct: 239 -----------------MSWNAMLNGYAVNGEVEMFEKV--------------------F 261

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANL 427
               E+++ +WN ++ GY       E+   F+ M   G V PN  T+ ++L  C+R+  L
Sbjct: 262 DEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGAL 321

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
             GK  H Y      +  +L + N L++MYA+ G +  A  VF+ + R+D +++ ++I G
Sbjct: 322 DMGKWVHVYA-ESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIING 380

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
             I G    AL +F+ M     +PD VT V +LSAC+H GLV +G   F+ M   Y I P
Sbjct: 381 LAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVP 440

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
           Q+EH+ CMVDL GRAGLL++A   I KMP  P + +WA LLGAC++++N  I E A ++L
Sbjct: 441 QIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRL 500

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
           +E  P N   +V+++N+Y   G  + +A+++  MRD G RK+PGC+ ++  +    F   
Sbjct: 501 IELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSL 560

Query: 668 DTSNVQAQEIYPLLGGLTELMKDAGYV 694
           D  + + + IY +L GLT L++  GYV
Sbjct: 561 DERHSETESIYRVLKGLTMLLRSHGYV 587


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 177/611 (28%), Positives = 311/611 (50%), Gaps = 41/611 (6%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISL 149
           Q K +HA  + L L+++  L+  ++     F   N +  +   S ++ P    WN +I  
Sbjct: 31  QLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVF--SQVKEPNIFLWNTMIRG 88

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWS 208
            V    + +A+ +Y  M+      +NFT P VLKAC   +DV  G  +HS  + A ++  
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +FV  +L+S+Y K    D A ++FD + ++                              
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDK------------------------------ 178

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                NV++W  I  G + +G+F+  +    ++       DS + V  L AC+ +G    
Sbjct: 179 -----NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTS 233

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+ I         G    V  +L+ MY +C +L  A ++F    EK I++W++M+ GY  
Sbjct: 234 GEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAF 293

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               +++  LF +M    ++P+  T+  +L  CA +  L  G  +   ++ R  F  + +
Sbjct: 294 NGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGI-WASSLMDRNEFLSNPV 352

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           L  +L++MY++ G V +A  +F  M ++D V + +++ G  + G  +    LF  + K+ 
Sbjct: 353 LGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHG 412

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           I+PD  T + +L  C+H G V EG++ F  M  ++ + P +EH+ CMVDL GRAGLLN+A
Sbjct: 413 IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEA 472

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
            ++I  MP  P + +W  LLG C++H++T + E   +KL+E  P NSG YV ++N+Y+  
Sbjct: 473 HQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGN 532

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
             W++  K+R+ M++  ++KI  C+W++   +   FLV D S+  +++IY  L  L   +
Sbjct: 533 HRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGREL 592

Query: 689 KDAGYVVKEEF 699
           K  G+V   EF
Sbjct: 593 KAVGHVPTTEF 603



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 195/427 (45%), Gaps = 37/427 (8%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C +   +  G ++H+  +  G + +  +   L++ Y     +++A  + ++   + 
Sbjct: 120 VLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN 179

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  +I+ Y+  G + EA+  +K++    ++ D+F+   VL AC  + D   G  +  
Sbjct: 180 VVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR 239

Query: 200 CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I D+    ++FV  +L+ MY K G ++ A  +F  M E+D VSW+TMI  YA  GL ++
Sbjct: 240 YISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQ 299

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  LF +MQ E ++ +  T               GVL                       
Sbjct: 300 ALDLFFQMQSENLKPDCYT-------------MVGVLS---------------------- 324

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ +GAL LG        R  +     +  ALI MYS+C  +  A+ +F    +K  + 
Sbjct: 325 ACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVV 384

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M+ G +    A+    LF  + + G+ P+  T   +L  C     +  G++F   + 
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVA 497
           R       +  +  +V++  R+G + EA  + + M  + + V + +L+ G  +  +  +A
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 498 LKLFEEM 504
            ++ +++
Sbjct: 505 EQVLKKL 511


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 203/643 (31%), Positives = 325/643 (50%), Gaps = 57/643 (8%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL-PWNLLISLYVR 152
           +QLHA  I   L  +   V  L+          +   L+ NS +   +  +  ++  Y  
Sbjct: 18  RQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSH 77

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVH 212
              +A+ + +Y+QMQ   +R D F YP ++K+ G       G   H  +   H    FV 
Sbjct: 78  LQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG---GIGFHAH-VLKLGHGSDAFVR 133

Query: 213 NALVSMYGKFGQVDVARRLFDKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           NA++ MY + G +  AR++FD++   ER    WN M+S Y       +A  LF  M E  
Sbjct: 134 NAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERN 193

Query: 271 V---------------------------EVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           V                           E +V++WN +  G  + G  +  L L   M  
Sbjct: 194 VITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVN 253

Query: 304 QETYLDSVATVIGLGACSHVG----ALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRC 358
                D    V  + ACS  G    A  L + +H   ++  C+     VR AL+ MY++ 
Sbjct: 254 AGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCF-----VRTALLDMYAKF 308

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASI 417
            DL  A  LF     ++++TWNSM++GY     +  +  LF+EM  +  + P+ VT+ S+
Sbjct: 309 GDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 368

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLL---WNSLVEMYARSGKVPEAKSVFDLMS 474
           +  C  +  L+ G     +++R    N+  L     N+++ MY+R G + +AK VF  M+
Sbjct: 369 ISACGHLGALELGN----WVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMA 424

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            RD V+Y +LI+G+   G G  A+ L   M +  I+PD VT + VL+ACSH+GL+ EG+K
Sbjct: 425 TRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRK 484

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            FE +       P ++H+ACMVDL GR G L  AK  + +MP  P + ++ +LL A +IH
Sbjct: 485 VFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIH 539

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           +   +GE AA KL E  P+NSG ++L++N+YA+ G W  + ++R  M+  GV+K  G +W
Sbjct: 540 KQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSW 599

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKE 697
           V+ G     F+V D S+ ++ +IY LL  L + M++AGY+  +
Sbjct: 600 VEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADK 642


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 182/565 (32%), Positives = 314/565 (55%), Gaps = 46/565 (8%)

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           + R G  A AL V++ +     R D+ T+   L AC  + D+  G  V     DA ++  
Sbjct: 84  HSRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +FV ++L+ +Y ++G +  A ++FD+M  RD V+W+TM++ + S G   +A Q++  M+E
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           +GV                    KG               D V  +  + AC+    +++
Sbjct: 203 DGV--------------------KG---------------DEVVMIGVIQACTAARNVRM 227

Query: 329 GKEIHGSAVRGCYGEYENVRNA--LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           G  +HG  +R  +G   +V  A  L+ MY++   L  A  +F +   ++ ++W++M+SG+
Sbjct: 228 GASVHGHLLR--HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                ++E+  LFR M  SG++P+   + S L  C+ +  L+ G+  H +I+RR  FN  
Sbjct: 286 AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFN-- 343

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
            +L  + ++MY++ G +  A+ +F+++S RD + + ++IA  G  G G+ AL LF+EMN+
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             ++PDH T  ++LSA SHSGLV EG+  F  M + + I P  +H+ C+VDL  R+GL+ 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A +++T M   PT A+W  LL  C  ++   +GE  A+ +LE +P++ G   L++N+YA
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           AT  WDK+ +VR  M+D G +K+PGC+ ++       FL++D S+ Q +EI   +  L  
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDL 583

Query: 687 LMKDAGYVVKEEFCS---EEEIVEE 708
            M+  GY+ + EF     EEE+ E+
Sbjct: 584 EMRKMGYIPRTEFVYHDLEEEVKEQ 608



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 220/480 (45%), Gaps = 55/480 (11%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           RG+ + A   F R    AA  D    +F   +  C ++  L  G+ +   A   G + + 
Sbjct: 87  RGSPASALRVF-RALPPAARPDST--TFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            +   L+  YA +    +A  + +    R  + W+ +++ +V  G   +A+ +Y++M+  
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
            ++GD      V++AC    +V  G  VH   +       +    +LV MY K G +DVA
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            R+F  M+ R+ VSW+ MIS +A  G   EA +LF  MQ  G++                
Sbjct: 264 CRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQP--------------- 308

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR----GCYGEY 344
                               DS A V  L ACS++G LKLG+ +HG  VR     C    
Sbjct: 309 --------------------DSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCI--- 345

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             +  A I MYS+C  L  A +LF M +++ +I WN+M++        +++  LF+EM  
Sbjct: 346 --LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +G+ P++ T AS+L   +    ++ GK +   ++           +  LV++ ARSG V 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 465 EAKSVFDLMSRRDEVT-YTSLIAGYGIQGEGRVALKLFEEMNKN--QIKPDHVTMVAVLS 521
           EA  +   M     V  + +L++G          L+L E +  N  +++PD V ++A++S
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGC----LNNKKLELGESIADNILELQPDDVGVLALVS 519



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 2/253 (0%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R+     +  F   G    A + + R+R      D V+     +I  C   + +  G  +
Sbjct: 174 RVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVV--MIGVIQACTAARNVRMGASV 231

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H   +  G+  + V    LV  YA   L + AC +      R  + W+ +IS + ++G  
Sbjct: 232 HGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQS 291

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALV 216
            EAL +++ MQ+  I+ D+    S L AC  +  +  GR VH  I    +++  +  A +
Sbjct: 292 DEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAI 351

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K G +  A+ LF+ + +RD + WN MI+   + G  ++A  LF EM E G+  +  
Sbjct: 352 DMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHA 411

Query: 277 TWNTIAGGCLRTG 289
           T+ ++      +G
Sbjct: 412 TFASLLSALSHSG 424


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 188/598 (31%), Positives = 308/598 (51%), Gaps = 39/598 (6%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           V + S   I+  CG  +    G  +H   +  GL     L   LV  Y  F    ++  +
Sbjct: 218 VNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHV 277

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
                 +  + WN  I  +   GF+ + L +++ M    +   + T  S+L A  ++   
Sbjct: 278 FNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYF 337

Query: 192 DFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
             G+ +H        +S+                        + +E D    NT++  YA
Sbjct: 338 HLGKELHG-------YSI-----------------------RRAVESDIFIANTLMDMYA 367

Query: 252 SKGLWKEAFQLFVEMQEEGVEV-NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
             G  ++A  +F     E +EV NV++WN +     + G       L+  M+      +S
Sbjct: 368 KFGCSEKASAIF-----ENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNS 422

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
              V  L ACS V ++K+GK+IH  ++R        V NALI +Y++C  L  A  +F  
Sbjct: 423 FTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR 482

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
           + EK  +++N+++ GY+   C  ES  LF++M  +G+E + V+    L  C+ ++  + G
Sbjct: 483 S-EKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQG 541

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           KE H  +++R + + H  L NSL+++Y + G +  A  +F+ ++++D  ++ ++I GYG+
Sbjct: 542 KEIHGVLVKR-LLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGM 600

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G+  VA +LF+ M  + I+ DHV+ +AVLS CSH GLV  G+K F +M +   I PQ  
Sbjct: 601 HGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIA-QNIKPQQM 659

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ACMVDL GRAG L+++ EII  MP+   S +W  LLG+C+IH +  +   AAE L E 
Sbjct: 660 HYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFEL 719

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           +PENSGYY L+ NMY+ +G W++   V+  M+   V+K P  +WV +GN    FLV D
Sbjct: 720 KPENSGYYTLLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 777



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 246/514 (47%), Gaps = 57/514 (11%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           A+G +LHA A+  GL    V     LVTFYA      +A  + +    R  + WN L+S 
Sbjct: 135 AKGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSA 194

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL 209
            + +G   +A      M    +  +  +  S+L ACG   D  FG  VH  +      S+
Sbjct: 195 LLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSV 254

Query: 210 F-VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
             + NALV MYGKFG ++ +  +F+                                MQE
Sbjct: 255 VNLGNALVDMYGKFGDLESSMHVFNG-------------------------------MQE 283

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           +    N ++WN+  G     G  + VLE+   M   +    SV     L A   +G   L
Sbjct: 284 K----NEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHL 339

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GKE+HG ++R        + N L+ MY++      A  +F+    +++++WN+M++  T 
Sbjct: 340 GKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQ 399

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
                E+  L  EM ++G  PN  T+ ++LP C+RVA+++ GK+ H + +RR++ ++ L 
Sbjct: 400 NGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSD-LF 458

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           + N+L+++YA+ G++  A+ +FD  S +D V+Y +LI GY        +L LF++M    
Sbjct: 459 VSNALIDVYAKCGQLNLARYIFD-RSEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAG 517

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF--------PQLEHFACMVDLYG 560
           I+ D V+ +  LSACS+     +G++       I+G+         P L +   ++D+Y 
Sbjct: 518 IEHDAVSFMGCLSACSNLSAFKQGKE-------IHGVLVKRLLDSHPFLAN--SLLDVYT 568

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           + G+L+ A +I  ++      A W T++    +H
Sbjct: 569 KGGMLDTASKIFNRITQKDV-ASWNTMILGYGMH 601



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 222/489 (45%), Gaps = 45/489 (9%)

Query: 94  KQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENS--NIRYPLPWNLLISLY 150
           ++ HA ++  G L  +  L   L+  YA+     +A  ++ +    +R    WN L    
Sbjct: 31  RRAHAASLVSGALTASFPLAGALLLSYAALPDIPSAHLILRHHPFRLRSAFLWNSLSRAL 90

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF---GRVVHSCI--DACH 205
                  EAL VY +M    +R D+ T+P  L A   +   +    G  +H+        
Sbjct: 91  ASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHAAALRRGLL 150

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
              +F  N LV+ Y   G+   ARR+FD+M  RD VSWN+++SA  + G+ ++A +  V 
Sbjct: 151 LADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVG 210

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           M   GV VNV +  +I   C                    T  D      G G C H   
Sbjct: 211 MMRSGVPVNVASLVSILPAC-------------------GTERDE-----GFGLCVHGLV 246

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           LK G                N+ NAL+ MY +  DL  +  +F    EK+ ++WNS +  
Sbjct: 247 LKFG-----------LNSVVNLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGC 295

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           + H    E+   +FR M    V P  VT++S+LP    +     GKE H Y +RRA+ ++
Sbjct: 296 FAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESD 355

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
            + + N+L++MYA+ G   +A ++F+ +  R+ V++ ++IA     G    A +L  EM 
Sbjct: 356 -IFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQ 414

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           KN   P+  T+V +L ACS    V  G KQ    +    +   L     ++D+Y + G L
Sbjct: 415 KNGECPNSFTLVNLLPACSRVASVKMG-KQIHAWSIRRSLMSDLFVSNALIDVYAKCGQL 473

Query: 566 NKAKEIITK 574
           N A+ I  +
Sbjct: 474 NLARYIFDR 482



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 114/262 (43%), Gaps = 16/262 (6%)

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA--EKSIITWNS 381
           G+L L +    S V G       +  AL+  Y+   D+  A+++ +      +S   WNS
Sbjct: 26  GSLLLRRAHAASLVSGALTASFPLAGALLLSYAALPDIPSAHLILRHHPFRLRSAFLWNS 85

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH---GKEFHCYIL 438
           +           E+  ++  M RSGV P+  T    L   A VA  +H   G E H   L
Sbjct: 86  LSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHAAAL 145

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           RR +    +   N+LV  YA  G+  +A+ VFD M  RD V++ SL++     G    A 
Sbjct: 146 RRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAK 205

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHS-----GLVVEGQKQFERMTSIYGIFPQLEHFA 553
           +    M ++ +  +  ++V++L AC        GL V G      +   +G+   +    
Sbjct: 206 RAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHG------LVLKFGLNSVVNLGN 259

Query: 554 CMVDLYGRAGLLNKAKEIITKM 575
            +VD+YG+ G L  +  +   M
Sbjct: 260 ALVDMYGKFGDLESSMHVFNGM 281



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 4/197 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           ++   F ++R+    HD V  SF   +  C  + A  QGK++H   +   L+ +P L   
Sbjct: 505 ESLHLFQQMRLAGIEHDAV--SFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANS 562

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  Y    + + A  +      +    WN +I  Y   G    A  ++  M+   I  D
Sbjct: 563 LLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYD 622

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFD 233
           + +Y +VL  C     VD G+   S + A +     +H A +V + G+ GQ+  +  +  
Sbjct: 623 HVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQLSESAEIIR 682

Query: 234 KMLER-DAVSWNTMISA 249
            M  R ++  W  ++ +
Sbjct: 683 NMPFRANSDVWGALLGS 699


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 190/595 (31%), Positives = 316/595 (53%), Gaps = 57/595 (9%)

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L   +VT   S+S  +    L E + +            Y RD     A+     +QS  
Sbjct: 10  LFRPVVTLRCSYSSTDQTLLLSEFTRL-----------CYQRD--LPRAMKAMDSLQSHG 56

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVV--HSCIDACHEWSLFVHNALVSMYGKFGQVDVA 228
           +  D+ TY  ++K C     V  G ++  H   +  H   +F+ N L++MY KF  ++ A
Sbjct: 57  LWADSATYSELIKCCISNRAVHEGNLICRHLYFNG-HRPMMFLVNVLINMYVKFNLLNDA 115

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            +LFD+M +R+ +SW TMISAY+   + ++A +L V M  + V  NV T++++    LR+
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSV----LRS 171

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
            N    + +L                       H G +K G E   S V         VR
Sbjct: 172 CNGMSDVRML-----------------------HCGIIKEGLE---SDVF--------VR 197

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           +ALI ++++  +   A  +F        I WNS++ G+     ++ +  LF+ M R+G  
Sbjct: 198 SALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 257

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
               T+ S+L  C  +A L+ G + H +I++   +++ L+L N+LV+MY + G + +A  
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHVHIVK---YDQDLILNNALVDMYCKCGSLEDALR 314

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VF+ M  RD +T++++I+G    G  + ALKLFE M  +  KP+++T+V VL ACSH+GL
Sbjct: 315 VFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGL 374

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           + +G   F  M  +YGI P  EH+ CM+DL G+AG L+ A +++ +M   P +  W TLL
Sbjct: 375 LEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
           GAC++ RN  + E+AA+K++   PE++G Y L++N+YA +  WD + ++RT MRD G++K
Sbjct: 435 GACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKK 494

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
            PGC+W++       F++ D S+ Q  E+   L  L   +   GYV +  F  ++
Sbjct: 495 EPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQD 549



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 208/456 (45%), Gaps = 48/456 (10%)

Query: 40  LLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLH 97
           LL        + +L +A +A   ++    SH +  DS  ++ +I CC   +A+ +G  + 
Sbjct: 29  LLSEFTRLCYQRDLPRAMKAMDSLQ----SHGLWADSATYSELIKCCISNRAVHEGNLIC 84

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
                 G      LV  L+  Y  F+L N+A  L +    R  + W  +IS Y +   + 
Sbjct: 85  RHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQ 144

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALV 216
           +AL +   M    +R + +TY SVL++C  M DV   R++H   I    E  +FV +AL+
Sbjct: 145 KALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALI 201

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            ++ K G+ + A  +FD+M+  DA+ WN++I  +A       A +LF  M+  G      
Sbjct: 202 DVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQA 261

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           T  ++                                   L AC+ +  L+LG + H   
Sbjct: 262 TLTSV-----------------------------------LRACTGLALLELGMQAHVHI 286

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           V+  Y +   + NAL+ MY +C  L  A  +F    E+ +ITW++M+SG      ++E+ 
Sbjct: 287 VK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF  M  SG +PNY+TI  +L  C+    L+ G  +   + +    +     +  ++++
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDL 404

Query: 457 YARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQ 491
             ++GK+ +A  + + M    D VT+ +L+    +Q
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQ 440


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 199/627 (31%), Positives = 319/627 (50%), Gaps = 60/627 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIF-----CCGKVKALAQGKQLHA 98
           L+ + G G   +A   ++ +R           +F H+ F      C  ++    G+ +H 
Sbjct: 84  LRSYTGLGCHREALAVYSAMR-----------AFDHLTFPFAAKACAGLRLGRHGRAVHC 132

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
            A+A G   +  +   L++ Y S      A  +      R  + WN +I+  V++G+   
Sbjct: 133 RALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAER 192

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVS 217
           AL V+ +M +  +  D  T  SVL AC +  D++ GR VH  + D      + V NAL+ 
Sbjct: 193 ALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALID 252

Query: 218 MYGKFGQVDVARRLFDKML-ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
           MYGK   ++ ARR+FD    ++D VSW  MI AY       EA  L  +M   G      
Sbjct: 253 MYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGA----- 307

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
                                         + + V  V  L AC+ + + K  K  H   
Sbjct: 308 -----------------------------AWPNGVTMVYLLSACASMPSGKHAKCTHALC 338

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDCAE 393
           +R        V  ALI  Y+RC  ++    L ++T E+      TWN+ LSGYT     +
Sbjct: 339 IRLGLKSDIAVETALIDAYARCGKMK----LMRLTLERGSWRAETWNAALSGYTVSGREK 394

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           ++  LF+ M    V P+  T+ASILP  A  A+L+ GK  HC++L    F     +   L
Sbjct: 395 KAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLG-FLRSTEIATGL 453

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           +++Y+++G +  A ++F  +  +D V +T++IAGYGI G  R A+ L++ M ++  KP+ 
Sbjct: 454 IDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNT 513

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VT+  +L ACSH+G++ EG K F+ M +++G+ P  EH++C+VD+ GRAG + +A  +I 
Sbjct: 514 VTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQ 573

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
            MP+ P++++W  LLGAC +H+N   GE AA++L +  PEN+G YVL+ N+YAA   W  
Sbjct: 574 DMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRD 633

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           +  VR  M + G+ K PG + V+A +V
Sbjct: 634 VQDVRRMMVERGLLKEPGSSLVEARSV 660



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 143/509 (28%), Positives = 230/509 (45%), Gaps = 55/509 (10%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCID 202
           N L+  Y   G + EAL VY  M++     D+ T+P   KAC  +     GR VH   + 
Sbjct: 81  NSLLRSYTGLGCHREALAVYSAMRAF----DHLTFPFAAKACAGLRLGRHGRAVHCRALA 136

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           A      +V NAL+SMY   G V  A  +F  M  R  VSWN +I+     G  + A ++
Sbjct: 137 AGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEV 196

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F EM  +GV +                                   D    V  L AC+ 
Sbjct: 197 FGEMAADGVGI-----------------------------------DRATVVSVLPACAQ 221

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA-EKSIITWNS 381
              L  G+ +H        G+Y  V+NALI MY +C+ L  A  +F     +K +++W +
Sbjct: 222 AKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTA 281

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVE-PNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           M+  Y   D A E+  L  +M  SG   PN VT+  +L  CA + + +H K  H   +R 
Sbjct: 282 MIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRL 341

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            + ++ + +  +L++ YAR GK+   +   +  S R E T+ + ++GY + G  + A++L
Sbjct: 342 GLKSD-IAVETALIDAYARCGKMKLMRLTLERGSWRAE-TWNAALSGYTVSGREKKAIEL 399

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F+ M    ++PD  TM ++L A + S  + EG K         G     E    ++D+Y 
Sbjct: 400 FKRMIAESVRPDSATMASILPAYAESADLKEG-KNIHCFLLTLGFLRSTEIATGLIDVYS 458

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET--RPENSGYY 618
           +AG L+ A  +   +P     A W T++    IH +        ++++E+  +P      
Sbjct: 459 KAGDLDAAWALFQWLPEKDVVA-WTTIIAGYGIHGHARTAILLYDRMVESGGKPNT---- 513

Query: 619 VLIAN-MYAAT--GCWDKLAKVRTCMRDL 644
           V IA  +YA +  G  D+  KV   MR++
Sbjct: 514 VTIATLLYACSHAGMIDEGIKVFKDMRNV 542



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 7/243 (2%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITW-NSMLSGYTHLDCAEESAFLFREMFRSGV 407
           + L  +Y  C     A+ L     +   +++ NS+L  YT L C  E+  ++  M     
Sbjct: 49  HPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAF-- 106

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
             +++T       CA +   +HG+  HC  L  A F     + N+L+ MY   G V  A+
Sbjct: 107 --DHLTFPFAAKACAGLRLGRHGRAVHCRAL-AAGFGGDTYVQNALISMYMSCGDVGAAE 163

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           +VF  M  R  V++ ++IAG    G    AL++F EM  + +  D  T+V+VL AC+ + 
Sbjct: 164 AVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAK 223

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            +  G +   R+    G+   +     ++D+YG+   L  A+ +     +      W  +
Sbjct: 224 DLNTG-RAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAM 282

Query: 588 LGA 590
           +GA
Sbjct: 283 IGA 285


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 190/595 (31%), Positives = 316/595 (53%), Gaps = 57/595 (9%)

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L   +VT   S+S  +    L E + +            Y RD     A+     +QS  
Sbjct: 10  LFRPVVTLRCSYSSTDQTLLLSEFTRL-----------CYQRD--LPRAMKAMDSLQSHG 56

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVV--HSCIDACHEWSLFVHNALVSMYGKFGQVDVA 228
           +  D+ TY  ++K C     V  G ++  H   +  H   +F+ N L++MY KF  ++ A
Sbjct: 57  LWADSATYSELIKCCISNRAVHEGNLICRHLYFNG-HRPMMFLVNVLINMYVKFNLLNDA 115

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            +LFD+M +R+ +SW TMISAY+   + ++A +L V M  + V  NV T++++    LR+
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSV----LRS 171

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
            N    + +L                       H G +K G E   S V         VR
Sbjct: 172 CNGMSDVRML-----------------------HCGIIKEGLE---SDVF--------VR 197

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           +ALI ++++  +   A  +F        I WNS++ G+     ++ +  LF+ M R+G  
Sbjct: 198 SALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 257

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
               T+ S+L  C  +A L+ G + H +I++   +++ L+L N+LV+MY + G + +A  
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHVHIVK---YDQDLILNNALVDMYCKCGSLEDALR 314

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           VF+ M  RD +T++++I+G    G  + ALKLFE M  +  KP+++T+V VL ACSH+GL
Sbjct: 315 VFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGL 374

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           + +G   F  M  +YGI P  EH+ CM+DL G+AG L+ A +++ +M   P +  W TLL
Sbjct: 375 LEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
           GAC++ RN  + E+AA+K++   PE++G Y L++N+YA +  WD + ++RT MRD G++K
Sbjct: 435 GACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKK 494

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
            PGC+W++       F++ D S+ Q  E+   L  L   +   GYV +  F  ++
Sbjct: 495 EPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQD 549



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 208/456 (45%), Gaps = 48/456 (10%)

Query: 40  LLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLH 97
           LL        + +L +A +A   ++    SH +  DS  ++ +I CC   +A+ +G  + 
Sbjct: 29  LLSEFTRLCYQRDLPRAMKAMDSLQ----SHGLWADSATYSELIKCCISNRAVHEGNLIC 84

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
                 G      LV  L+  Y  F+L N+A  L +    R  + W  +IS Y +   + 
Sbjct: 85  RHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQ 144

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALV 216
           +AL +   M    +R + +TY SVL++C  M DV   R++H   I    E  +FV +AL+
Sbjct: 145 KALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALI 201

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            ++ K G+ + A  +FD+M+  DA+ WN++I  +A       A +LF  M+  G      
Sbjct: 202 DVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQA 261

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           T  ++                                   L AC+ +  L+LG + H   
Sbjct: 262 TLTSV-----------------------------------LRACTGLALLELGMQAHVHI 286

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           V+  Y +   + NAL+ MY +C  L  A  +F    E+ +ITW++M+SG      ++E+ 
Sbjct: 287 VK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LF  M  SG +PNY+TI  +L  C+    L+ G  +   + +    +     +  ++++
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDL 404

Query: 457 YARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQ 491
             ++GK+ +A  + + M    D VT+ +L+    +Q
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQ 440


>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 558

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 187/583 (32%), Positives = 306/583 (52%), Gaps = 50/583 (8%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL---- 141
           + K L   +Q+HA  I  G +   VL   L   Y    + +N       S  R P     
Sbjct: 16  QTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAY----IQSNRLDFATASFDRIPCWKRN 71

Query: 142 --PWNLLISLYVRDG--FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
              WN ++S Y +    +Y++ L +Y +M+      D+F     +KAC  +  ++ G ++
Sbjct: 72  RHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGMLI 131

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H   +    +   +V  +LV MY +FG ++ A+++FD+M  R++V W  ++  Y      
Sbjct: 132 HGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSKD 191

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
            E F+LF  M++ G+                                    LD++  +  
Sbjct: 192 SEVFRLFYLMRDTGLA-----------------------------------LDALTLICL 216

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKDLRHAYILFKMTAEKS 375
           + AC +V A K GK +HG ++R  + +    +  ++I MY +C+ L +A  LF+ + E++
Sbjct: 217 VKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARKLFETSVERN 276

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++ W +++SG+   + A E+  LFR+M    + PN+ T+A+IL  C+ + +L+HGK  H 
Sbjct: 277 VVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVHG 336

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y++R  +     + + S ++ YAR G +  A+ VFD+M +R+ ++++S+I  +GI G   
Sbjct: 337 YMIRNGI-EMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFE 395

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL  F+ M    + P+ VT V++LSACSHSG V EG KQFE MT  YG+ P+ EH+ACM
Sbjct: 396 EALDCFDNMKSQNLVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGLVPEEEHYACM 455

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VDL GRAG + +AK  I  MP  P ++ W  LL AC+IH+   +    AEKLL   P+ S
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPDES 515

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
             YVL++N+YA  G W+ +  VR  M   G RK  G +  + G
Sbjct: 516 SVYVLLSNIYADAGMWEMVNCVRHKMGIKGYRKPMGLSATEGG 558



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 214/457 (46%), Gaps = 50/457 (10%)

Query: 74  LDSFAHI--IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           +DSF  +  I  C  +  L  G  +H  A+  GL+K+  + P LV  YA F    +A  +
Sbjct: 107 VDSFNLVFAIKACVGLGLLENGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKV 166

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +   +R  + W +L+  Y++    +E   ++  M+   +  D  T   ++KACG +   
Sbjct: 167 FDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAG 226

Query: 192 DFGRVVH--SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
             G+ VH  S   +  + S ++  +++ MY K   +D AR+LF+  +ER+ V W T+IS 
Sbjct: 227 KEGKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISG 286

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           +A      EA  LF +M  E +  N  T   I                            
Sbjct: 287 FAKCERAVEAIDLFRQMLGESILPNHCTLAAI---------------------------- 318

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYILF 368
                  L +CS +G+L+ GK +HG  +R    E + V   + I  Y+RC +++ A  +F
Sbjct: 319 -------LVSCSSLGSLRHGKSVHGYMIRNGI-EMDAVNFTSFIDTYARCGNIQMARKVF 370

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
            M  ++++I+W+SM++ +      EE+   F  M    + PN VT  S+L  C+   N++
Sbjct: 371 DMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSGNVK 430

Query: 429 HG-KEFHCYILRRAMF--NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSL 484
            G K+F        +    EH   +  +V++  R+G++ EAKS  D M  +   + + +L
Sbjct: 431 EGWKQFESMTRDYGLVPEEEH---YACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           ++   I  E  +A ++ E++    ++PD  ++  +LS
Sbjct: 488 LSACRIHKEVDLAGEIAEKL--LSMEPDESSVYVLLS 522



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 121/241 (50%), Gaps = 4/241 (1%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLV 112
           S+ F  F  +R T  + D +  +   ++  CG V A  +GK +H  +I    ++++  L 
Sbjct: 192 SEVFRLFYLMRDTGLALDAL--TLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLE 249

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
             ++  Y    L +NA  L E S  R  + W  LIS + +     EA+ +++QM    I 
Sbjct: 250 ASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESIL 309

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
            ++ T  ++L +C  +  +  G+ VH   I    E       + +  Y + G + +AR++
Sbjct: 310 PNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQMARKV 369

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           FD M +R+ +SW++MI+A+   GL++EA   F  M+ + +  N +T+ ++   C  +GN 
Sbjct: 370 FDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSGNV 429

Query: 292 K 292
           K
Sbjct: 430 K 430


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 191/580 (32%), Positives = 322/580 (55%), Gaps = 64/580 (11%)

Query: 126 NNACFLVENSNIRYP-LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA 184
           N + ++++++N+  P L  N    L+V D            + +  +  D   Y  +LK 
Sbjct: 52  NISHYIIDDTNLLRPSLNPNSTTGLHVLD-----------LINNGSLEPDRTIYNKLLKR 100

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           C  +  +  G++VH+  +++     L + N+++ MY K G +++AR++FD+M  +D V+W
Sbjct: 101 CTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTW 160

Query: 244 NTMISAYASKGLWKEA---FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
            +MI+ Y+  G    A     LF+EM  +G                              
Sbjct: 161 TSMITGYSQDGYASSATTALVLFLEMVRDG------------------------------ 190

Query: 301 MRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNALITMYSR 357
           +R  E  L S+    G LG+C        GK+IHG   +  YG  ENV   ++L+ MY+R
Sbjct: 191 LRPNEFALSSLVKCCGFLGSCVD------GKQIHGCCWK--YGFQENVFVGSSLVDMYAR 242

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           C +LR + ++F     K+ ++WN+++SG+      EE+  LF +M R G      T +++
Sbjct: 243 CGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSAL 302

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLW--NSLVEMYARSGKVPEAKSVFDLMSR 475
           L   +   +L+ GK  H ++++     + L+ +  N+L+ MYA+SG + +AK VFD + +
Sbjct: 303 LCSSSTTGSLEQGKWLHAHMMKSG---KKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVK 359

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            D V+  S++ GY   G G+ A++LFEEM    +I+P+ +T ++VL+ACSH+GL+ EG  
Sbjct: 360 VDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLY 419

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            FE M   YG+ P+L H+  +VDL+GRAGLL++AK  I +MP  P + +W  LLGA ++H
Sbjct: 420 YFELMKK-YGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMH 478

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
           +NT +G +AA+K+LE  P   G + L++N+YA+ G W  +AKVR  M+D G++K P C+W
Sbjct: 479 KNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSW 538

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           V+  N    F  +D S+ Q  ++Y +   L + +K+ GYV
Sbjct: 539 VEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYV 578



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 186/398 (46%), Gaps = 47/398 (11%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  +  L QGK +H   +      + V+   ++  YA       A  + +   ++  + W
Sbjct: 101 CTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTW 160

Query: 144 NLLISLYVRDGFYAEA---LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
             +I+ Y +DG+ + A   L ++ +M    +R + F   S++K CG +     G+ +H C
Sbjct: 161 TSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGC 220

Query: 201 IDACHEW----SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
              C ++    ++FV ++LV MY + G++  +R +FD++  ++ VSWN +IS +A KG  
Sbjct: 221 ---CWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEG 277

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           +EA  LFV+MQ EG      T++ +                                   
Sbjct: 278 EEALGLFVKMQREGFGATEFTYSAL----------------------------------- 302

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L + S  G+L+ GK +H   ++        V N L+ MY++  ++  A  +F    +  +
Sbjct: 303 LCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDV 362

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++ NSML GY      +E+  LF EM     +EPN +T  S+L  C+    L  G  ++ 
Sbjct: 363 VSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGL-YYF 421

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
            ++++      L  + ++V+++ R+G + +AKS  + M
Sbjct: 422 ELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEM 459



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 4/246 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + + ++ CCG + +   GKQ+H C    G ++N  +   LV  YA       +  + +  
Sbjct: 197 ALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDEL 256

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN LIS + R G   EAL ++ +MQ        FTY ++L +      ++ G+
Sbjct: 257 ESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGK 316

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+  + +  +   +V N L+ MY K G +  A+++FD++++ D VS N+M+  YA  G
Sbjct: 317 WLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHG 376

Query: 255 LWKEAFQLFVEMQE-EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ--ETYLDSV 311
           L KEA +LF EM     +E N IT+ ++   C   G     L     M+    E  L   
Sbjct: 377 LGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHY 436

Query: 312 ATVIGL 317
            TV+ L
Sbjct: 437 TTVVDL 442


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 203/610 (33%), Positives = 316/610 (51%), Gaps = 51/610 (8%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           A  + LH  ++A G   +  +   L   Y   S  ++A  + +       + WN L++  
Sbjct: 131 AAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLA-- 188

Query: 151 VRDGFY-AEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH----SCIDAC 204
              G   +EAL  + +M  + R+R D+ T  S L+A  E   +  GR VH     C  A 
Sbjct: 189 ---GLPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAE 245

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           HE    V   L+S+Y K G +D A+ LFD+M   D V++N +IS Y+  G+ + + +LF 
Sbjct: 246 HE---HVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFK 302

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           E+   G       W                       R   + L +V  V      S  G
Sbjct: 303 ELTASG-------W-----------------------RPNSSTLVAVIPVY-----SPFG 327

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
              L + +H   V+        V  AL T+Y R  D+  A  +F    EK++ +WN+M+S
Sbjct: 328 HELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMIS 387

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY      E +  LF+ M    V+PN +TI+S L  CA +  L  GK  H  I+ +    
Sbjct: 388 GYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVH-RIISKEKLE 446

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            ++ +  +L++MYA+ G + EA+S+FD M  ++ V++ ++I+GYG+ G+G  ALKL+++M
Sbjct: 447 LNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDM 506

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
              +I P   T ++V+ ACSH GLV EGQK F  MT+ Y I P +EH  CMVDL GRAG 
Sbjct: 507 LDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGK 566

Query: 565 LNKAKEIITKMPYTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
           LN+A E+I++ P +     +W  LLGAC +H+N+ + + A++KL E   EN+GYYVL++N
Sbjct: 567 LNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSN 626

Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGG 683
           +Y +   + + A VR   +   + K PGC  ++ G+    F+  D  + Q++ IY  L  
Sbjct: 627 LYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLER 686

Query: 684 LTELMKDAGY 693
           LT  M +AGY
Sbjct: 687 LTAKMIEAGY 696



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 185/387 (47%), Gaps = 41/387 (10%)

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           D    R +H   + A +    FV +AL  +Y K  + D AR++FD +   D + WNT+++
Sbjct: 129 DAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLA 188

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
                    EA + FV M + G                             R+R   T L
Sbjct: 189 GLPG----SEALEAFVRMVDAG-----------------------------RVRPDSTTL 215

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
            S      L A +    + +G+ +HG  V+    E+E+V   L+++YS+C D+  A  LF
Sbjct: 216 AS-----SLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLF 270

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                  ++ +N+++SGY+     E S  LF+E+  SG  PN  T+ +++P+ +   +  
Sbjct: 271 DRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHEL 330

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
             +  H +++ +A  +   L+  +L  +Y R   +  A+S+FD M  +   ++ ++I+GY
Sbjct: 331 LARCLHAFVV-KARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGY 389

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G   +A+ LF+ M +  ++P+ +T+ + LSAC+H G +  G K   R+ S   +   
Sbjct: 390 AQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLG-KWVHRIISKEKLELN 448

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKM 575
           +     ++D+Y + G + +A+ I  +M
Sbjct: 449 VYVMTALIDMYAKCGSIAEARSIFDRM 475



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 190/419 (45%), Gaps = 47/419 (11%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           S+A EAF R+ + A        + A  +    +   +A G+ +H   +  GL ++  +V 
Sbjct: 193 SEALEAFVRM-VDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVT 251

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            L++ Y+     ++A FL +  +    + +N LIS Y  +G    ++ ++K++ +   R 
Sbjct: 252 GLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRP 311

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           ++ T  +V+            R +H+  + A  +    V  AL ++Y +   ++ AR +F
Sbjct: 312 NSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIF 371

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D MLE+   SWN MIS YA  GL + A  LF  MQE  V+ N IT ++            
Sbjct: 372 DAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISST----------- 420

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                                   L AC+H+GAL LGK +H    +        V  ALI
Sbjct: 421 ------------------------LSACAHLGALSLGKWVHRIISKEKLELNVYVMTALI 456

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MY++C  +  A  +F     K++++WN+M+SGY       E+  L+++M  + + P   
Sbjct: 457 DMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSS 516

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEA 466
           T  S++  C+    +  G++       R M NE+ +         +V++  R+GK+ EA
Sbjct: 517 TFLSVIYACSHGGLVDEGQKVF-----RVMTNEYRITPGIEHCTCMVDLLGRAGKLNEA 570


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 191/608 (31%), Positives = 304/608 (50%), Gaps = 46/608 (7%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYAS----FSLYNNACFLVENSNIRYPLPWNLLISL 149
            Q+ + AIA G+ ++PV+  KL+ +  S    F+      F +   N+     WN +   
Sbjct: 45  NQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNV---FSWNFMFRA 101

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           Y R  F AE + +Y  M       DN+++P VLKAC  +  +  GR +HS  +       
Sbjct: 102 YSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLD 161

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
           +FV NAL+S +   G V+ AR +FD +  L RD VSWN+MIS Y     ++ A ++F   
Sbjct: 162 VFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVF--- 218

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
                      W  +  G L                      D V  V  L  C  +G L
Sbjct: 219 -----------WELLGDGSLSP--------------------DEVTLVSALSVCGRLGLL 247

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            LGK+IHG      +     V ++LI MYS+C  +  A  +F     ++ + W SM++GY
Sbjct: 248 DLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGY 307

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
              D  +E+  LFREM   G   +  TIA +L  C     L  G+  H Y  R ++    
Sbjct: 308 AQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSI-EMD 366

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           L   N+L+ MY++ G + +A  +F  +++ D  +++++I+G  + GE   AL LF +M  
Sbjct: 367 LNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEM 426

Query: 507 -NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
            + I+P+ +T + VL AC+H G V +G   F  MT IY + P +EH+ CMVDL GRA LL
Sbjct: 427 ISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLL 486

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
            +A++ I  +P  P   +W +LL AC+ H N  + E+AA+++ E  P   G  VL++N+Y
Sbjct: 487 VEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVY 546

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           A+   W  + +VR  M    ++K PGC++V+   +     V D S+ +   IY  +  + 
Sbjct: 547 ASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISIN 606

Query: 686 ELMKDAGY 693
           + ++  G+
Sbjct: 607 KALQSKGF 614



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 207/452 (45%), Gaps = 43/452 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN--NACFLVE 133
           SF  ++  C ++  L +G+++H+  + LG+  +  +   L++ ++S        A F + 
Sbjct: 129 SFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDML 188

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLKACGEMMDVD 192
            + +R  + WN +IS Y++   Y  AL V+ ++     +  D  T  S L  CG +  +D
Sbjct: 189 PALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLD 248

Query: 193 FGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G+ +H           +FV ++L+ MY K GQ++ AR++FD++  R+ V W +MI+ YA
Sbjct: 249 LGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYA 308

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
              L+KEA +LF EMQ  G   +  T                                 +
Sbjct: 309 QSDLFKEAIELFREMQIGGFAADAAT---------------------------------I 335

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
           A V  L AC H GAL  G+ IH    R       N RNALI MYS+C D++ A  +F   
Sbjct: 336 ACV--LSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGL 393

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHG 430
            +  I +W++++SG      ++++  LF +M   S + PN +T   +L  C     +  G
Sbjct: 394 TQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKG 453

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYG 489
             +   + +       +  +  +V++  R+  + EA K +  L  + D V + SL+  + 
Sbjct: 454 LYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLL--FA 511

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            +  G + L  F      +++P       +LS
Sbjct: 512 CRNHGNIELAEFAAKQIEELEPRRCGARVLLS 543


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  318 bits (814), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 301/540 (55%), Gaps = 44/540 (8%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV--HSCIDACHEWSLFVHNALVSMYGKFG 223
           +QS  +  D+ TY  ++K C     V  G ++  H   +  H+  +F+ N L++MY KF 
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNG-HQPMMFLVNVLINMYVKFN 62

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            ++ A +LFD+M +R+ +SW TMISAY+   + ++A +L V M  +GV  NV T++++  
Sbjct: 63  LLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSV-- 120

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
             LR  N    + +L                       H G +K G E   S V      
Sbjct: 121 --LRACNGMSDVRML-----------------------HCGIIKEGLE---SDVY----- 147

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              VR+ALI ++++  +   A  +F        I WNS++ G+     ++ +  LF+ M 
Sbjct: 148 ---VRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 204

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           R+G      T+ S+L  C  +A L+ G + H +I++   +++ L+L N+LV+MY + G +
Sbjct: 205 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK---YDQDLILNNALVDMYCKCGSL 261

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A+ VF+ M  RD +T++++I+G    G  + ALKLFE M  +  KP+++T+V VL AC
Sbjct: 262 EDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFAC 321

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           SH+GL+ +G   F  M  +YGI P  EH+ CM+DL G+AG L+ A +++ +M   P +  
Sbjct: 322 SHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVT 381

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W TLLGAC++ RN  + E+AA+K++   PE++G Y +++N+YA +  WD + ++R  MRD
Sbjct: 382 WRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRD 441

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
           +G++K PGC+W++       F++ D S+ Q  E+   L  L   +   GYV +  F  ++
Sbjct: 442 IGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQD 501



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 198/427 (46%), Gaps = 44/427 (10%)

Query: 69  SHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN 126
           SH +  DS  ++ +I CC   +A+ +G  +       G +    LV  L+  Y  F+L N
Sbjct: 6   SHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLN 65

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
           +A  L +    R  + W  +IS Y +   + +AL +   M    +R + +TY SVL+AC 
Sbjct: 66  DAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACN 125

Query: 187 EMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
            M DV   R++H   I    E  ++V +AL+ ++ K G+ + A  +FD+M+  DA+ WN+
Sbjct: 126 GMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 182

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           +I  +A       A +LF  M+  G      T  ++                        
Sbjct: 183 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV------------------------ 218

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
                      L AC+ +  L+LG + H   V+  Y +   + NAL+ MY +C  L  A 
Sbjct: 219 -----------LRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDAR 265

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F    E+ +ITW++M+SG      ++E+  LF  M  SG +PNY+TI  +L  C+   
Sbjct: 266 RVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAG 325

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSL 484
            L+ G  +   + +    N     +  ++++  ++GK+ +A  + + M    D VT+ +L
Sbjct: 326 LLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTL 385

Query: 485 IAGYGIQ 491
           +    +Q
Sbjct: 386 LGACRVQ 392


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  318 bits (814), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 188/613 (30%), Positives = 302/613 (49%), Gaps = 48/613 (7%)

Query: 78  AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP--KLVTFYASFSLYNNACFLVENS 135
           AH+  C   ++A    + L      L     P +V    +++ Y  F L + A  L + +
Sbjct: 48  AHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFGLVSEAIKLFDGT 107

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R    WN+++S  V++    E L  + +M+   +R DNFTY  ++  C    D+ FG+
Sbjct: 108 SKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIPCC----DLGFGQ 163

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  +  C +   F+   L+ MY + G++  AR++FD M  R  V+WN MIS Y+  G
Sbjct: 164 QVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYG 223

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              ++  LF ++  EG+  +  T+  +         F    ++   M+         + +
Sbjct: 224 RGDKSIGLFRQLXREGISADEYTYAIV------LNEFAARWQVFEAMQVH-------SLI 270

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
           I  G CS                      + N  NAL+ +YS+C  +  A  LF+   ++
Sbjct: 271 IERGFCSD--------------------RFTN--NALVNLYSKCGYVASASRLFEEIPDQ 308

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +++W  ++ G+      EE+ +LF +M    +EPN  T   +L  CA     Q G+ FH
Sbjct: 309 DVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFH 368

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             +L+  +    +++ +++V+MY++ G++ +A   F  M  RD  ++  +I GY   G G
Sbjct: 369 GLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAG 428

Query: 495 RVALKLFEEM---NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
             ALKL+ EM     + I P+ VT V VL ACSH+GL+ EG   F+ M   + I P  EH
Sbjct: 429 MKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEH 488

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + CMVDL GRAGLL +A+ +I  +P  P + MW  LLGAC++H +  +    AE L    
Sbjct: 489 YTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNE 548

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P NS  YVL+AN Y   G W +  ++R  M   GV K  GC+WV+ G     FL  D  +
Sbjct: 549 PRNSSNYVLLANSYTDIGEWGEAVEIREVMEARGVEKTAGCSWVEIGTCMHSFLAGDXLH 608

Query: 672 VQ---AQEIYPLL 681
            Q   A ++ P L
Sbjct: 609 PQIEVASQVLPRL 621



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 211/469 (44%), Gaps = 61/469 (13%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112
           L +    F ++R ++   D    ++A II CC     L  G+Q+HA  + +  + +  + 
Sbjct: 128 LGEGLTHFMKMRCSSVRPDNF--TYAIIIPCCD----LGFGQQVHADIVKVCSDLDAFIG 181

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
             L+  YA      +A  + +    R  + WN +IS Y + G   +++ +++Q+    I 
Sbjct: 182 TNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGIS 241

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVAR 229
            D +TY  VL        V     VHS I     C +   F +NALV++Y K G V  A 
Sbjct: 242 ADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSD--RFTNNALVNLYSKCGYVASAS 299

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           RLF+++ ++D VSW  +I  +   G  +EA  LF +MQ   +E N  T+  +        
Sbjct: 300 RLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGL-------- 351

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVR 348
                                      LGAC+   A + G+  HG  ++ G  G    V 
Sbjct: 352 ---------------------------LGACADANAFQKGRHFHGLVLKFGLLGADVVVG 384

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF---RS 405
           +A++ MYS+C ++  A   F+   E+ I +WN ++ GY       ++  L+ EM     S
Sbjct: 385 SAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPS 444

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEMYARS 460
           G+ PN VT   +L  C+    L+ G     Y   + M ++HL+      +  +V++  R+
Sbjct: 445 GIAPNEVTFVGVLCACSHNGLLKEG-----YSYFKEMVDKHLIKPTAEHYTCMVDLLGRA 499

Query: 461 GKVPEAKS-VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           G + EA++ +  L  + D V + +L+    + G+ ++  +  E +  N+
Sbjct: 500 GLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNE 548


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  318 bits (814), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 187/587 (31%), Positives = 316/587 (53%), Gaps = 58/587 (9%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W L+I+  ++ G+  EA+ ++  M       D FT   V+ AC  M  +  G+ +
Sbjct: 234 RNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQL 293

Query: 198 HS-------CIDACHEWSLFVHNALVSMYGKF---GQVDVARRLFDKMLERDAVSWNTMI 247
           HS        +D C      V   L++MY K    G +  AR++FD++L+ +  SW  MI
Sbjct: 294 HSQAIRHGLTLDRC------VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMI 347

Query: 248 SAYASKGLW-KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           + Y  KG + +EA  LF  M    V  N  T+++                          
Sbjct: 348 TGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSST------------------------- 382

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                     L AC+++ AL++G+++   AV+  +     V N+LI+MY+R   +  A  
Sbjct: 383 ----------LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARK 432

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
            F +  EK++I++N+++  Y     +EE+  LF E+   G+  +  T AS+L   A +  
Sbjct: 433 AFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGT 492

Query: 427 LQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
           +  G++ H  +++  +  N+ +   N+L+ MY+R G +  A  VF+ M  R+ +++TS+I
Sbjct: 493 IGKGEQIHARVIKSGLKLNQSVC--NALISMYSRCGNIESAFQVFEDMEDRNVISWTSII 550

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
            G+   G    AL+LF +M +  ++P+ VT +AVLSACSH GLV EG K F+ M + +G+
Sbjct: 551 TGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGV 610

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
            P++EH+AC+VD+ GR+G L++A + I  MPY   + +W T LGAC++H N  +G+ AA+
Sbjct: 611 IPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAK 670

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
            ++E  P +   Y+L++N+YA+   WD+++ +R  M++  + K  GC+WV+  N    F 
Sbjct: 671 MIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFY 730

Query: 666 VDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
           V DTS+ +A EIY  L  L+  +K  GYV   +F     EEE  E++
Sbjct: 731 VGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKL 777



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/502 (25%), Positives = 236/502 (47%), Gaps = 91/502 (18%)

Query: 49  GRGNLSKAFEAFTR----------IRIT--------AASHDVVLD-----------SFAH 79
           GRG+L  AF+ F +          + IT          + D+ LD           + + 
Sbjct: 217 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSG 276

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL------VE 133
           +I  C  ++ L  G+QLH+ AI  GL  +  +   L+  YA  S+  + C        + 
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336

Query: 134 NSNIRYPLPWNLLISLYVRDGFY-AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           + N+     W  +I+ YV+ G Y  EAL +++ M    +  ++FT+ S LKAC  +  + 
Sbjct: 337 DHNV---FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALR 393

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G  V +  +         V N+L+SMY + G++D AR+ FD + E++ +S+NT+I AYA
Sbjct: 394 IGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYA 453

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                +EA +LF E++++G+  +  T+ ++  G                           
Sbjct: 454 KNLNSEEALELFNEIEDQGMGASAFTFASLLSG--------------------------- 486

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                    + +G +  G++IH   ++      ++V NALI+MYSRC ++  A+ +F+  
Sbjct: 487 --------AASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG- 430
            ++++I+W S+++G+     A ++  LF +M   GV PN VT  ++L  C+ V  +  G 
Sbjct: 539 EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGW 598

Query: 431 KEFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSL 484
           K F      ++M+ EH ++     +  +V++  RSG + EA    + M  + D + + + 
Sbjct: 599 KHF------KSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTF 652

Query: 485 IAGYGIQGE---GRVALKLFEE 503
           +    + G    G+ A K+  E
Sbjct: 653 LGACRVHGNLELGKHAAKMIIE 674



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 193/440 (43%), Gaps = 47/440 (10%)

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           P P    +   + +G   +A+   + M  +    D  TY   LK C      D G +VH 
Sbjct: 31  PNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHE 90

Query: 200 CIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWK 257
            +     +      N+L+S+Y K GQ + A  +F  M   RD +SW+ M+S +A+  +  
Sbjct: 91  KLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGF 150

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
            A   FV+M E G   N                                Y  + AT    
Sbjct: 151 RALLTFVDMIENGYYPN-------------------------------EYCFAAAT---- 175

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCK-DLRHAYILFKMTAEKS 375
            ACS    + +G  I G  ++  Y + +  V   LI M+ + + DL  A+ +F+   E++
Sbjct: 176 RACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERN 235

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
            +TW  M++       A E+  LF +M  SG EP+  T++ ++  CA +  L  G++ H 
Sbjct: 236 AVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHS 295

Query: 436 YILRRAMFNEHLLLWNSLVEMYAR---SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
             +R  +  +   +   L+ MYA+    G +  A+ +FD +   +  ++T++I GY  +G
Sbjct: 296 QAIRHGLTLDR-CVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKG 354

Query: 493 E-GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
                AL LF  M    + P+H T  + L AC++   +  G++ F     +   F  +  
Sbjct: 355 GYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG--FSSVNC 412

Query: 552 FA-CMVDLYGRAGLLNKAKE 570
            A  ++ +Y R+G ++ A++
Sbjct: 413 VANSLISMYARSGRIDDARK 432



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 18/232 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A   N  +A E F  I            +FA ++     +  + +G+Q+HA  I  GL+
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAF--TFASLLSGAASIGTIGKGEQIHARVIKSGLK 509

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   L++ Y+      +A  + E+   R  + W  +I+ + + GF  +AL ++ +M
Sbjct: 510 LNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKM 569

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFG-------RVVHSCIDACHEWSLFVHNALVSMY 219
               +R +  TY +VL AC  +  V+ G          H  I     ++      +V + 
Sbjct: 570 LEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYA-----CIVDIL 624

Query: 220 GKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKG---LWKEAFQLFVEMQ 267
           G+ G +  A +  + M  + DA+ W T + A    G   L K A ++ +E +
Sbjct: 625 GRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQE 676


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 195/623 (31%), Positives = 315/623 (50%), Gaps = 17/623 (2%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-SFSLYNNACFLV----ENSNIRYP 140
           K K L   KQ+ A  I  GL  +P    +L+ F A S S Y +    +    EN NI   
Sbjct: 62  KCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNI--- 118

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSR---RIRGDNFTYPSVLKACGEMMDVDFGRVV 197
             WN+ I  +       E+  +YKQM        R D+FTYP + K C ++     G ++
Sbjct: 119 FSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMI 178

Query: 198 HSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
              +     E    VHNA + M+   G ++ AR++FD+   RD VSWN +I+ Y   G  
Sbjct: 179 LGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEA 238

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           ++A  ++  M+ EGV+ + +T   +   C   G+     E    ++     +        
Sbjct: 239 EKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNAL 298

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           +   S  G +   + I  +  +     +      +I+ Y+RC  L  +  LF    EK +
Sbjct: 299 MDMFSKCGDIHEARRIFDNLEKRTIVSW----TTMISGYARCGLLDVSRKLFDDMEEKDV 354

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           + WN+M+ G       +++  LF+EM  S  +P+ +T+   L  C+++  L  G   H Y
Sbjct: 355 VLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRY 414

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           I + ++ + ++ L  SLV+MYA+ G + EA SVF  +  R+ +TYT++I G  + G+   
Sbjct: 415 IEKYSL-SLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAST 473

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A+  F EM    I PD +T + +LSAC H G++  G+  F +M S + + PQL+H++ MV
Sbjct: 474 AISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMV 533

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GRAGLL +A  ++  MP    +A+W  LL  C++H N  +GE AA+KLLE  P +SG
Sbjct: 534 DLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSG 593

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YVL+  MY     W+   + R  M + GV KIPGC+ ++   +   F+V D S  ++++
Sbjct: 594 IYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEK 653

Query: 677 IYPLLGGLTELMKDAGYVVKEEF 699
           IY  L  L   M+ +  V+  E+
Sbjct: 654 IYDRLHCLGRHMRSSLSVLFSEY 676


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 186/620 (30%), Positives = 317/620 (51%), Gaps = 39/620 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  I+  C  +      +QLHA  +      + +    L++ Y  FS   +A  +    
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI 260

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFG 194
            I+  + W  +I+ + + G+  EALC +++M S+ +   N F + S   AC ++++ D G
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCG 320

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H  CI       LF   +L  MY K G ++ AR +F  + + D              
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPD-------------- 366

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                                ++ WN I  G     N K      S+MR      + V  
Sbjct: 367 ---------------------LVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTV 405

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           +  L ACS    L  G ++H   V+  +     V N+L++MYS+C +L  A  +F+    
Sbjct: 406 LSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGN 465

Query: 374 KS-IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           K+ I++WN++L+     + A E   L + MF S ++P++VT+ ++L    ++A+ + G +
Sbjct: 466 KADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQ 525

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HC+I++  + N  + + N+L+ MY + G +  A+ +FD +   D ++++SLI GY   G
Sbjct: 526 IHCFIMKSGL-NLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAG 584

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G+ A +LF  M    +KP+ +T V +L+ACSH G+V EG K +  M   Y I P  EH 
Sbjct: 585 CGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHC 644

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +CMVDL  RAG L+ A++ I +MP+ P   +W TLL AC++H N  +G+ AAE +L+  P
Sbjct: 645 SCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDP 704

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            NS   V++ N++A++G W   A++R+ MR + V K+PG +W++  +    FL +D  + 
Sbjct: 705 SNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHP 764

Query: 673 QAQEIYPLLGGLTELMKDAG 692
           +  +IY +L  L   + D G
Sbjct: 765 ERGKIYTMLEELMLQILDDG 784



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/539 (24%), Positives = 254/539 (47%), Gaps = 49/539 (9%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KAF+ F +     +S  +   ++ H+I  C  +++L  G+++H   +    + + +L   
Sbjct: 83  KAFDIFQK----CSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNH 138

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           +++ Y        A  + ++  ++  + W  +IS Y R G    A+ +Y QM       D
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           +FT+ S++K+C  + D    R +H+  + +     L   NAL+SMY KF Q+  A  +F 
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV-EVNVITWNTIAGGCLRTGNFK 292
           +++ +D +SW +MI+ ++  G   EA   F EM  + V + N   + +            
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGS------------ 306

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                                     ACS +     G++IHG  ++   G       +L 
Sbjct: 307 -----------------------AFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLC 343

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MY++C  L  A  +F    +  ++ WN++++G+  +  A+ES+  F +M  +G+ PN V
Sbjct: 344 DMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDV 403

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-D 471
           T+ S+L  C+    L HG + H YI++   FN  + + NSL+ MY++   + +A  VF D
Sbjct: 404 TVLSLLCACSEPVMLNHGIQVHSYIVKMG-FNLDIPVCNSLLSMYSKCSNLNDALQVFED 462

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV- 530
           + ++ D V++ +L+     Q +    L+L + M  ++IKPDHVT+  VL +   SG +  
Sbjct: 463 IGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVS---SGQIAS 519

Query: 531 -EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            E   Q        G+   +     ++++Y + G L  A+++   +   P    W++L+
Sbjct: 520 YEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG-NPDIISWSSLI 577



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 205/443 (46%), Gaps = 41/443 (9%)

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALV 216
           +A  ++++  S  ++  + TY  ++ AC  +  ++ GR +H  +  C ++  + + N ++
Sbjct: 83  KAFDIFQKCSSSPLK--SVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHIL 140

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
           SMYGK G +  AR +FD M  ++ VSW +MIS Y+  G    A  L+V+M   G   +  
Sbjct: 141 SMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           T+ +I                                   + +CS +   KL +++H   
Sbjct: 201 TFGSI-----------------------------------VKSCSGLDDFKLARQLHAHV 225

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  +G     +NALI+MY++   +  A  +F     K +I+W SM++G++ L    E+ 
Sbjct: 226 LKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEAL 285

Query: 397 FLFREMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             FREM    V +PN     S    C+++     G++ H   ++  + ++ L    SL +
Sbjct: 286 CHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSD-LFAGCSLCD 344

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+ G +  A++VF  + + D V + ++IAG+      + +   F +M    + P+ VT
Sbjct: 345 MYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVT 404

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           ++++L ACS   ++  G +    +  + G    +     ++ +Y +   LN A ++   +
Sbjct: 405 VLSLLCACSEPVMLNHGIQVHSYIVKM-GFNLDIPVCNSLLSMYSKCSNLNDALQVFEDI 463

Query: 576 PYTPTSAMWATLLGACQIHRNTG 598
                   W TLL AC      G
Sbjct: 464 GNKADIVSWNTLLTACLQQNQAG 486


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 192/623 (30%), Positives = 316/623 (50%), Gaps = 33/623 (5%)

Query: 84  CGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           C  +K L     +HA  +  G +  + + + KL+  Y+ F   + A  L + +       
Sbjct: 13  CRSLKTLTT---IHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFL 69

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           W  LI  +  +  Y  A   + +M    I   NFT  SVLKA   +  +  G +V+    
Sbjct: 70  WTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAV 129

Query: 203 AC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            C +E+ L V N ++ ++ + G++  AR++FD+M ERDAVSWN+MI+ Y + G    A +
Sbjct: 130 RCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARK 189

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF  M+E     NVI+W ++  G ++ G+      L  RM  ++     V     +   +
Sbjct: 190 LFDRMEER----NVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGN 245

Query: 322 HVGALKLGK--EIHGSA-----VRGC--YGEYENVRN--------------ALITMYSRC 358
            V A  L +   IH        + GC   GE +  +                +I  Y + 
Sbjct: 246 LVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKV 305

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
            D+  A  +F    EK+++ W++M+ GY        S  L++     G++P+      I+
Sbjct: 306 GDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGII 365

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
             C+++      +   C  +  ++F  +L +  SL++MYA+ G +  A  VF+++ ++D 
Sbjct: 366 SACSQLGVPDTAESVICDFVGPSLF-PNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDL 424

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
             Y+++I  +   G    A+ LF EM K  IKPD V  + VL+AC+H GLV EG++ F +
Sbjct: 425 HCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQ 484

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
           M   YGI P  +H+ACMVD+ GRAG L +A  +I  MP  P + +W  LL AC++H N  
Sbjct: 485 MIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQ 544

Query: 599 IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
           + E AA +L +  P NSG YVL+ N+YA  G WD  +KVR  +R+  VRK  G +W++ G
Sbjct: 545 LAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELG 604

Query: 659 NVFSPFLVDDTSNVQAQEIYPLL 681
           +V   F++ D S+  ++ I+ +L
Sbjct: 605 SVIHEFVMGDKSHFDSERIFFML 627


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 206/646 (31%), Positives = 330/646 (51%), Gaps = 23/646 (3%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIF---CCGKVKALAQGKQLHAC 99
           TL  F  +     A   F  +R+T  SH +  + + ++     C   +     G QLHA 
Sbjct: 134 TLISFLSKHRQHHALHLF--LRMTTRSH-LPPNEYTYVAVLTACSSLLHHFHFGLQLHAA 190

Query: 100 AIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159
           A+      +P +   LV+ YA  + ++ A  L      R    WN +IS  ++D  Y  A
Sbjct: 191 ALKTAHFDSPFVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTA 250

Query: 160 LCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVS 217
             +++ MQ+    R D+FT   +L A   +M+   G+ VH+  +    E  L V N L+ 
Sbjct: 251 FRLFRNMQATDAFRVDDFTLSILLTASASLME---GQQVHAHAVKLGLETDLNVGNGLIG 307

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
            Y KFG VD    LF+ M  RD ++W  M++AY   GL   A ++F EM E+    N ++
Sbjct: 308 FYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEK----NSVS 363

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           +NT+  G  R       + L  RM  +   L   +    + AC  +G  K+ K++HG AV
Sbjct: 364 YNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAV 423

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKM--TAEKSIITWNSMLSGYTHLDCAEES 395
           +  +G    V  AL+ MY+RC  +  A  +F      E S + W +M+ GY      EE+
Sbjct: 424 KFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEA 483

Query: 396 AFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSL 453
            +LF      G V  + V  AS+L LC  + +L  GK+ HC++++  + FN  L + N++
Sbjct: 484 IYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFN--LEVGNAV 541

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           V MY + G V +A  VF  M   D VT+ +LI+G  +  +G  AL+++ EM    IKP+ 
Sbjct: 542 VSMYFKCGSVDDAMKVFGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQ 601

Query: 514 VTMVAVLSACSHSGL--VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           VT V ++SA   + L  V + +  F  M ++Y I P   H+A  + + G  GLL +A E 
Sbjct: 602 VTFVLIISAYRQTNLNLVDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALET 661

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I  MP+ P++ +W  LL  C++H+N  IG+WAA+ +L   P++   ++L++N+Y+A+G W
Sbjct: 662 INNMPFQPSALVWRVLLDGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRW 721

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           D+   VR  MR+ G RK P  +W+      + F   D S+ Q ++I
Sbjct: 722 DRSEMVREDMREKGFRKHPAQSWIVCEKKINSFYPRDRSHPQEKDI 767



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 151/323 (46%), Gaps = 19/323 (5%)

Query: 223 GQVDVARRLFDKMLERDAVSW---NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
           G   +A+ +   +L+RD       N +IS Y    L+  A +LF+ +       NV+++ 
Sbjct: 78  GDTHLAKTVHATLLKRDEEDTHLSNALISTYLKLNLFPHALRLFLSLPSP----NVVSYT 133

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSH-VGALKLGKEIHGSAV 337
           T+    L        L L  RM T+     +  T +  L ACS  +     G ++H +A+
Sbjct: 134 TLI-SFLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAAL 192

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           +  + +   V NAL+++Y++      A  LF     + I +WN+++S     D   ++AF
Sbjct: 193 KTAHFDSPFVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQ-DSLYDTAF 251

Query: 398 -LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LFR M     +   V   ++  L    A+L  G++ H + ++  +  + L + N L+  
Sbjct: 252 RLFRNM--QATDAFRVDDFTLSILLTASASLMEGQQVHAHAVKLGLETD-LNVGNGLIGF 308

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y++ G V + + +F+ M  RD +T+T ++  Y   G   +ALK+F+EM +     + V+ 
Sbjct: 309 YSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEK----NSVSY 364

Query: 517 VAVLSACSHSGLVVEGQKQFERM 539
             VL+    +    E  + F RM
Sbjct: 365 NTVLAGFCRNEQGFEAMRLFVRM 387



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 138/330 (41%), Gaps = 39/330 (11%)

Query: 297 LLSRMRTQETYL--DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L  ++R    YL  +S + +  L   S  G   L K +H + ++    E  ++ NALI+ 
Sbjct: 49  LRHKLRHGTHYLPPESHSLLHALHVSSRSGDTHLAKTVHATLLKR-DEEDTHLSNALIST 107

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y +     HA  LF      +++++ +++S  +            R   RS + PN  T 
Sbjct: 108 YLKLNLFPHALRLFLSLPSPNVVSYTTLISFLSKHRQHHALHLFLRMTTRSHLPPNEYTY 167

Query: 415 ASILPLCARVANLQH-GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
            ++L  C+ + +  H G + H   L+ A F+   +  N+LV +YA+      A  +F+ +
Sbjct: 168 VAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVA-NALVSLYAKHASFHAALKLFNQI 226

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN-KNQIKPDHVTMVAVLSACSHSGLVVEG 532
            RRD  ++ ++I+          A +LF  M   +  + D  T+  +L+A   S  ++EG
Sbjct: 227 PRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTA---SASLMEG 283

Query: 533 QK-------------------------QFERMTSIYGIFPQLE-----HFACMVDLYGRA 562
           Q+                         +F  +  +  +F  +       +  MV  Y   
Sbjct: 284 QQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEF 343

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           GL+N A ++  +MP   + +    L G C+
Sbjct: 344 GLVNLALKVFDEMPEKNSVSYNTVLAGFCR 373


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/605 (29%), Positives = 312/605 (51%), Gaps = 38/605 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++ CC +  AL +G+  HA  I LGL  +      LV  YA   L  +A  + +  
Sbjct: 122 TFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGM 181

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             R  + WN ++  YV +G  A AL  +++M  + ++  D+    + L AC     +  G
Sbjct: 182 PARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALG 241

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H   I    E  + V  +LV MY K G V  A  +F KM  R               
Sbjct: 242 REIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLR--------------- 286

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                                V+TWN + GG           +   +MR     ++ V  
Sbjct: 287 --------------------TVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTA 326

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           +  L AC+   +   G+ +H   VR  +  +  +  AL+ MY +   +  +  +F    +
Sbjct: 327 INLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITD 386

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K++++WN+M++ Y +++  +E+  LF E+    + P+Y T+ +++P    + +++  K+ 
Sbjct: 387 KTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQM 446

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H YI++   + +  L+ N+++ MYAR G +  ++ +FD M  +D +++ ++I GY I G+
Sbjct: 447 HSYIVKLG-YGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQ 505

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G++AL++F+EM  + ++P+  T V+VL+ACS SGL  EG K+F  M   YG+ PQ+EH+ 
Sbjct: 506 GKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYG 565

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CM DL GRAG L +    I  MP  PTS +W +LL A +   +  I E+AAE++ +    
Sbjct: 566 CMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHN 625

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N+G YV++++MYA  G W+ + ++R+ M++ G+R+    + V+  N    F+  D S+ Q
Sbjct: 626 NTGCYVVLSSMYADAGRWEDVERIRSLMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQ 685

Query: 674 AQEIY 678
           +++I+
Sbjct: 686 SEKIH 690



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 220/470 (46%), Gaps = 43/470 (9%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-ID 202
           N++I  +       +AL  Y+ M     R D FT+P VLK C     +  GR  H+  I 
Sbjct: 89  NVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIK 148

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                 ++  N+LV++Y K G V  A R+FD M  RD VSWNTM+  Y S G+   A   
Sbjct: 149 LGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALAC 208

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F EM +                 L+ G+                  DSV  +  L AC  
Sbjct: 209 FREMND----------------ALQVGH------------------DSVGVIAALAACCL 234

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
             AL LG+EIHG A+R    +   V  +L+ MY +C ++  A  +F     ++++TWN M
Sbjct: 235 ESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCM 294

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           + GY   +   ++   F +M   G +   VT  ++L  CA+  +   G+  H Y++RR  
Sbjct: 295 IGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRR-H 353

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F  H++L  +L+EMY + GKV  ++ +F  ++ +  V++ ++IA Y      + A+ LF 
Sbjct: 354 FLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFL 413

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI-YGIFPQLEHFACMVDLYGR 561
           E+    + PD+ TM  V+ A    G + + ++    +  + YG    +     ++ +Y R
Sbjct: 414 ELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLI--MNAVMHMYAR 471

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
            G +  ++EI  KMP     + W T++    IH   G G+ A E   E +
Sbjct: 472 CGNIVASREIFDKMPGKDVIS-WNTIIIGYAIH---GQGKIALEMFDEMK 517



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 186/402 (46%), Gaps = 48/402 (11%)

Query: 70  HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           HD V    A +  CC +  ALA G+++H  AI  GLE++  +   LV  Y          
Sbjct: 220 HDSV-GVIAALAACCLE-SALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKC----GNV 273

Query: 130 FLVENSNIRYPL----PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
           F  EN   + PL     WN +I  Y  +    +A   + QM+    + +  T  ++L AC
Sbjct: 274 FFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTAC 333

Query: 186 GEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
            +     FGR VH+ +   H    + +  AL+ MYGK G+V+ + ++F ++ ++  VSWN
Sbjct: 334 AQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWN 393

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            MI+AY    +++EA  LF+E+  + +  +  T  T+                       
Sbjct: 394 NMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTV----------------------- 430

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                       + A   +G+++  K++H   V+  YG+   + NA++ MY+RC ++  +
Sbjct: 431 ------------VPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVAS 478

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F     K +I+WN+++ GY      + +  +F EM  SG+EPN  T  S+L  C+  
Sbjct: 479 REIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVS 538

Query: 425 ANLQHG-KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
                G KEF+       M  + +  +  + ++  R+G++ E
Sbjct: 539 GLEAEGWKEFNSMQQEYGMIPQ-IEHYGCMTDLLGRAGELRE 579



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 56  AFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           AF+ F ++R+     +VV  +  +++  C + ++   G+ +HA  +      + VL   L
Sbjct: 307 AFDCFMQMRVDGFQVEVV--TAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETAL 364

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           +  Y       ++  +      +  + WN +I+ Y+    Y EA+ ++ ++ ++ +  D 
Sbjct: 365 LEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDY 424

Query: 176 FTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
           FT  +V+ A   +  +   + +HS I    +  S  + NA++ MY + G +  +R +FDK
Sbjct: 425 FTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDK 484

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           M  +D +SWNT+I  YA  G  K A ++F EM+  G+E N  T+ ++   C  +G
Sbjct: 485 MPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSG 539



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL+  +  +G++ EA   F  ++R     +  +I G+        AL  +  M     +P
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARP 118

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D  T   VL  C+ +G + EG+     +  + G+   +     +V LY + GL+  A+ +
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKL-GLGADVYTANSLVALYAKLGLVGDAERV 177

Query: 572 ITKMP 576
              MP
Sbjct: 178 FDGMP 182


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 191/540 (35%), Positives = 287/540 (53%), Gaps = 38/540 (7%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           + FT+ S+L A    M V  G+ +HS I     + ++FV  ALV MY K   +  A R+F
Sbjct: 9   NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVF 68

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D+M ER+ VSWN+MI  +    L+  A                             G FK
Sbjct: 69  DQMPERNLVSWNSMIVGFFHNNLYDRA----------------------------VGVFK 100

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
            VL      R +    + V+    L AC+++G L  G+++HG  V+        V N+L+
Sbjct: 101 DVL------REKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLM 154

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MY +C+       LF+   ++ ++TWN ++ G+   D  EE+   F  M R G+ P+  
Sbjct: 155 DMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEA 214

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           + +++L   A +A L  G   H  I++   + +++ +  SL+ MYA+ G + +A  VF+ 
Sbjct: 215 SFSTVLHSSASLAALHQGTAIHDQIIKLG-YVKNMCILGSLITMYAKCGSLVDAYQVFEG 273

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           +   + +++T++I+ Y + G     ++LFE M    I+P HVT V VLSACSH+G V EG
Sbjct: 274 IEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEG 333

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
              F  M  I+ + P  EH+ACMVDL GRAG L++AK  I  MP  PT ++W  LLGAC+
Sbjct: 334 LAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACR 393

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
            + N  +G  AAE+L E  P N G YVL+ANM   +G  ++  +VR  M   GVRK PGC
Sbjct: 394 KYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGC 453

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSE--EEIVEEIG 710
           +W+D  N+   F   D S+  + EIY +L  L +L+K  GYV + EF +   EE  EE G
Sbjct: 454 SWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQG 513



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 209/476 (43%), Gaps = 46/476 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ I+        +  G+QLH+     G + N  +   LV  YA  +  ++A  + +  
Sbjct: 12  TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQM 71

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQ-MQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             R  + WN +I  +  +  Y  A+ V+K  ++ + +  +  +  SVL AC  M  ++FG
Sbjct: 72  PERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG 131

Query: 195 RVVHSCIDACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R VH  +       L +V N+L+ MY K    D   +LF  + +RD V+WN ++  +   
Sbjct: 132 RQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQN 191

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
             ++EA   F  M+ EG+  +  +++T+                                
Sbjct: 192 DKFEEACNYFWVMRREGILPDEASFSTV-------------------------------- 219

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L + + + AL  G  IH   ++  Y +   +  +LITMY++C  L  AY +F+   +
Sbjct: 220 ---LHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIED 276

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
            ++I+W +M+S Y    CA +   LF  M   G+EP++VT   +L  C+    ++ G   
Sbjct: 277 HNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAH 336

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG----YG 489
              + +    N     +  +V++  R+G + EAK   + M  +   +    + G    YG
Sbjct: 337 FNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYG 396

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
               GR A +   EM      P +  ++A  + C+ SG + E   +  R+  + G+
Sbjct: 397 NLKMGREAAERLFEMEP--YNPGNYVLLA--NMCTRSGRLEEAN-EVRRLMGVNGV 447



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           SG  PN  T +SIL   A    + HG++ H  I +   F+ ++ +  +LV+MYA+   + 
Sbjct: 4   SGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHG-FDANIFVGTALVDMYAKCADMH 62

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE-MNKNQIKPDHVTMVAVLSAC 523
            A  VFD M  R+ V++ S+I G+        A+ +F++ + +  + P+ V++ +VLSAC
Sbjct: 63  SAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSAC 122

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
           ++ G +  G +Q   +   +G+ P       ++D+Y +    ++  ++ 
Sbjct: 123 ANMGGLNFG-RQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLF 170


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 191/646 (29%), Positives = 343/646 (53%), Gaps = 25/646 (3%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++  C  ++    G Q+H  A+ +G + + V    L+  YA     + +     + 
Sbjct: 176 TFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSM 235

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + W+ +I+  V++      L ++K+MQ   +     T+ SV ++C  +  +  G 
Sbjct: 236 PEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGS 295

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA--S 252
            +H   +       + +  A + MY K   +  A++LF+ +   +  S+N +I  YA   
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD 355

Query: 253 KGLWKEAFQL--------FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR---- 300
           KGL  +   L         ++   EG++V+ ++  ++    +   N   +L++  +    
Sbjct: 356 KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVAN--AILDMYGKCGAL 413

Query: 301 -----MRTQETYLDSVATVIGLGACSHVGALK--LGKEIHGSAVRGCYGEYENVRNALIT 353
                +  +    D+V+    + A    G  +  L   IH   ++   G    V  ALI 
Sbjct: 414 VEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALID 473

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MYS+C  +  A  L    AE+++++WN+++SG++    +EE+   F +M   GV+P+  T
Sbjct: 474 MYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFT 533

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
            A+IL  CA +  ++ GK+ H  I+++ + ++   + ++LV+MY++ G + + + +F+  
Sbjct: 534 YATILDTCANLVTVELGKQIHAQIIKKELQSD-AYISSTLVDMYSKCGNMQDFQLIFEKA 592

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             RD VT+ +++ GY   G G  ALK+FE M    +KP+H T +AVL AC H GLV +G 
Sbjct: 593 PNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGL 652

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
             F  M S YG+ PQLEH++C+VD+ GR+G ++KA E+I  MP+   + +W TLL  C+I
Sbjct: 653 HYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKI 712

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           H N  + E AA  +L+  PE+S  YVL++N+YA  G W+++ K+R  MR  G++K PGC+
Sbjct: 713 HGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCS 772

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           W++  +    FLV D ++ +++EIY  L  LT+ MK  GY+   +F
Sbjct: 773 WIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDF 818



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/513 (23%), Positives = 231/513 (45%), Gaps = 43/513 (8%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R+  P     +   +  F    +  +   Q+   +   F++  + + C +   +  G+  
Sbjct: 7   RHLFPIRFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSH--IFQECSDRKALCPGKQA 64

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H+  I    + ++FV N L+ MY K   ++ A ++FD M +RD VSWN M+  YA +G  
Sbjct: 65  HARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDI 124

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
             A +LF  M E     +V++WN++  G L  G+ + V+++  +M    T  D     + 
Sbjct: 125 GVAQKLFDAMPER----DVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L +CS +     G +IHG AV+  +       +AL+ MY++CK L  +   F    EK+ 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W+++++G    D       LF+EM ++GV  +  T AS+   CA ++ L+ G + H +
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGH 300

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            L+   F   +++  + ++MY +   + +A+ +F+ +   +  +Y ++I GY    +G  
Sbjct: 301 ALKTD-FGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKG-- 357

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACS-----HSGLVVEGQKQFERMTSIYGIFPQLEH 551
                       +  D V++     AC+       GL V G        S   +   +  
Sbjct: 358 ------------LGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAI-- 403

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
               +D+YG+ G L +A  +  +M  +  +  W  ++ A   H   G  E      +  R
Sbjct: 404 ----LDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAA---HEQNGNEEKTLSLFIHNR 455

Query: 612 PENS----GYYVLIA--NMYAATGCWDKLAKVR 638
              S      +V IA  +MY+  G  +K  K+ 
Sbjct: 456 IIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLH 488



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 126/592 (21%), Positives = 250/592 (42%), Gaps = 93/592 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYN-- 126
           +F+HI   C   KAL  GKQ HA  I    +    +   L+  Y        +F +++  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 127 --------NACF--------------LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
                   NA                L +    R  + WN LIS Y+ +G + + + V+ 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           QM       D  T+  VLK+C  + D   G  +H   +    +  +   +AL+ MY K  
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++D + + F  M E++ VSW+ +I+        +   +LF EMQ+ GV V+  T+ ++  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASV-- 281

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                              +C+ + AL+LG ++HG A++  +G 
Sbjct: 282 ---------------------------------FRSCAGLSALRLGSQLHGHALKTDFGT 308

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              +  A + MY +C +L  A  LF      ++ ++N+++ GY   D             
Sbjct: 309 DVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD------------- 355

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
             G+  + V+++     CA +     G + H   + +++   ++ + N++++MY + G +
Sbjct: 356 -KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSM-KSLCQSNICVANAILDMYGKCGAL 413

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF--EEMNKNQIKPDHVTMVAVLS 521
            EA  VF+ M  RD V++ ++IA +   G     L LF    + K+++  D    +A++ 
Sbjct: 414 VEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALID 473

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK---MPYT 578
             S  G++ + +K  +R+         +  +  ++  +       +A++  +K   M   
Sbjct: 474 MYSKCGMMEKAEKLHDRLAE-----QTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVD 528

Query: 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY-VLIANMYAATG 629
           P +  +AT+L  C       +G+    ++++   ++  Y    + +MY+  G
Sbjct: 529 PDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 580


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 191/604 (31%), Positives = 320/604 (52%), Gaps = 40/604 (6%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +K+ +L   L+  Y    L   A  L +    R  + W  +I+ Y    + A A   + +
Sbjct: 42  KKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHE 101

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQ 224
           M  +    + FT  SVLK+C  M  + +G +VH  +     E SL+V NA+++MY     
Sbjct: 102 MVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMY----- 156

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
                          A    TM          + A  +F +++ +    N +TW T+  G
Sbjct: 157 ---------------ATCSVTM----------EAACLIFRDIKVK----NDVTWTTLITG 187

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
               G+  G L++  +M  +   +      I + A + + ++  GK+IH S ++  +   
Sbjct: 188 FTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSN 247

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V N+++ +Y RC  L  A   F    +K +ITWN+++S     D + E+  +F+    
Sbjct: 248 LPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSD-SSEALLMFQRFES 306

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G  PN  T  S++  CA +A L  G++ H  I RR  FN+++ L N+L++MYA+ G +P
Sbjct: 307 QGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRG-FNKNVELANALIDMYAKCGNIP 365

Query: 465 EAKSVF-DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           +++ VF +++ RR+ V++TS++ GYG  G G  A++LF++M  + I+PD +  +AVLSAC
Sbjct: 366 DSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSAC 425

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
            H+GLV +G K F  M S YGI P  + + C+VDL GRAG + +A E++ +MP+ P  + 
Sbjct: 426 RHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDEST 485

Query: 584 WATLLGACQIHRNTG-IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           W  +LGAC+ H++ G I   AA K++E +P+  G YV+++ +YAA G W   A+VR  MR
Sbjct: 486 WGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMR 545

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVK-EEFCS 701
            +G +K  G +W+   N    F V D     A  +Y +LG L E  ++AGYV + +   +
Sbjct: 546 MMGNKKEAGMSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPELDSLVN 605

Query: 702 EEEI 705
           ++E+
Sbjct: 606 DQEV 609



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 192/416 (46%), Gaps = 40/416 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL-YNNACFLVEN 134
           + + ++  C  +K LA G  +H   + LG+E +  +   ++  YA+ S+    AC +  +
Sbjct: 113 TLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRD 172

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             ++  + W  LI+ +   G     L +YKQM         +     ++A   +  V  G
Sbjct: 173 IKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTG 232

Query: 195 RVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + +H S I    + +L V N+++ +Y + G +  A+  F +M ++D ++WNT+IS    +
Sbjct: 233 KQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISEL-ER 291

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
               EA  +F   + +G   N  T+ ++                                
Sbjct: 292 SDSSEALLMFQRFESQGFVPNCYTFTSL-------------------------------- 319

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTA 372
              + AC+++ AL  G+++HG   R  + +   + NALI MY++C ++  +  +F ++  
Sbjct: 320 ---VAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVD 376

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            +++++W SM+ GY       E+  LF +M  SG+ P+ +   ++L  C     ++ G +
Sbjct: 377 RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK 436

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
           +   +      N    ++N +V++  R+GK+ EA  + + M  + DE T+ +++  
Sbjct: 437 YFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGA 492


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 193/635 (30%), Positives = 318/635 (50%), Gaps = 49/635 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP--VLVPKLVTFYASFSLYNNACFLVE 133
           S+  +   CGK+K+L  G+  H         KNP   L   ++  Y       +A  + +
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHE--QMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFD 69

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
               R  + WN +IS Y  +G + +  C++  M     + +  TY   L++      ++ 
Sbjct: 70  EMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEI 129

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G+ +HS  I +    +  V+ A+ +MY K G ++ A  +F+KM E++AV+W  ++  Y  
Sbjct: 130 GKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQ 189

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                +A  LF +M  EGVE                                   LD   
Sbjct: 190 AERQMDALALFAKMVNEGVE-----------------------------------LDEYV 214

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
             I L AC+ +  L  G++IHG  V+       +V   L+  Y +C +L  A   F+  +
Sbjct: 215 FSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWIS 274

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           E + ++W+++++GY  +   EE+   F  +    V+ N  T  SI   C+ +A+   G +
Sbjct: 275 EPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQ 334

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H   ++ ++   +    ++++ MY+R G++  A  VF+ +   D V +T++IAGY  QG
Sbjct: 335 AHADAIKSSLV-AYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQG 393

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               ALKLF  M    ++P+ VT +AVL+ACSHSGLV+EG++  E M+S YG+   ++H+
Sbjct: 394 NAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHY 453

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CMVD+Y RAG L +A E+I  MP++P +  W  LLG C  +RN  IGE AAE L +  P
Sbjct: 454 DCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDP 513

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
           E++  Y+L+ N+YA+ G W + A VR  M +  +RK   C+W+        F+V D  + 
Sbjct: 514 EDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHP 573

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEE--FCSEEEI 705
           Q +EIY  L  L +       V+KEE    +EE++
Sbjct: 574 QTEEIYSKLEALND------SVIKEETGLLTEEDV 602


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 190/613 (30%), Positives = 303/613 (49%), Gaps = 54/613 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP----W 143
           K   Q  Q+ A  IA G + N  + PKLVT  A+      A  L +    + P P    W
Sbjct: 112 KTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFD----QIPDPNIALW 167

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +   Y +   Y E + ++ QM+   IR + FT+P VLK+CG++  +  G  VH  +  
Sbjct: 168 NSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK 227

Query: 204 C-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           C    + FV   L+ MY   G V  A ++F +M ER+ V+W +MI+ Y        A +L
Sbjct: 228 CGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRL 287

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F    +   E +V+ WN +  G +  G+     +L   M  ++                 
Sbjct: 288 F----DLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMF-------------- 329

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
                                     N ++  Y+   ++     LF+   E++I +WN++
Sbjct: 330 -------------------------WNTVLKGYATNGNVEALEGLFEEMPERNIFSWNAL 364

Query: 383 LSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           + GY H     E    F+ M   S V PN  T+ ++L  CAR+  L  GK  H Y    +
Sbjct: 365 IGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYA-ESS 423

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
               ++ + N+L++MYA+ G +  A SVF  M  +D +++ +LI G  +   G  AL LF
Sbjct: 424 GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLF 483

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
            +M     KPD +T + +L AC+H GLV +G   F+ M   Y I PQ+EH+ CMVD+  R
Sbjct: 484 FQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLAR 543

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG L +A   + KMP      +WA LLGAC+I++N  + E A ++L+E  P+N   YV++
Sbjct: 544 AGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVML 603

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+Y   G W+ +A+++  MRD G +K+PGC+ ++  +    F   D  + Q +EIY +L
Sbjct: 604 SNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVL 663

Query: 682 GGLTELMKDAGYV 694
            GL ++++  GYV
Sbjct: 664 RGLVKVLRSFGYV 676



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 12/254 (4%)

Query: 57  FEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           FE     +   +  DV  +  +   ++  C ++ AL  GK +H  A + GL+ N  +   
Sbjct: 375 FEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNA 434

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  YA   +  NA  +    + +  + WN LI         A+AL ++ QM++   + D
Sbjct: 435 LMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPD 494

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
             T+  +L AC  M  V+ G      +  D      +  +  +V M  + G+++ A    
Sbjct: 495 GITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFV 554

Query: 233 DKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            KM +E D V W  ++ A   Y +  L + A Q  +E++ +    N +  + I G     
Sbjct: 555 RKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKN-PANYVMLSNIYG---DA 610

Query: 289 GNFKGVLELLSRMR 302
           G ++ V  L   MR
Sbjct: 611 GRWEDVARLKVAMR 624


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/567 (31%), Positives = 292/567 (51%), Gaps = 23/567 (4%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           W  ++S   R+G    AL ++  M    +  ++F   + L AC ++  +  G  VHS  +
Sbjct: 82  WTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAV 141

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            A      ++ + L+ MY + G +  A+ +FD+M   D V + ++ISA+   G ++ A +
Sbjct: 142 RAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAE 201

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRT--GNFKGVLELLSRMRTQETYLDSV-------- 311
             ++M ++G++ N  T  TI   C R       G L     +R+Q  Y  +         
Sbjct: 202 ALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRN 261

Query: 312 --------ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
                   A  I LGAC  +G   LG+++H SA++        V NAL++MY R   +  
Sbjct: 262 EGVDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEE 318

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
              +        +++W + +S        E++  L  +M   G  PN    +S+L  CA 
Sbjct: 319 LEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCAD 378

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
           VA+L  G +FHC  L+    +E +   N+L+ MY++ G++  A+  FD+M   D  ++ S
Sbjct: 379 VASLDQGMQFHCLALKLGCDSE-ICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNS 437

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           LI G+   G+   AL++F +M  N IKPD  T + VL  C+HSG+V EG+  F  M   Y
Sbjct: 438 LIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQY 497

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
              P   H+ACM+D+ GR G  ++A  +I  MP+ P + +W TLL +C++HRN  IG+ A
Sbjct: 498 SFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLA 557

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
           A++L+E    +S  YVL++N+YA  G W+   KVR  M + GV+K  GC+W++  N    
Sbjct: 558 ADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHT 617

Query: 664 FLVDDTSNVQAQEIYPLLGGLTELMKD 690
           F   D S+  +  IY +LG L  +M+D
Sbjct: 618 FASRDMSHPNSDSIYQMLGELVAVMQD 644



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 162/386 (41%), Gaps = 57/386 (14%)

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G   +A  LF  M  +    NV+ W ++  GC R G  +  L + + M       +  A
Sbjct: 61  SGRLADALDLFDRMPRK----NVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFA 116

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               L AC+ +GAL+ G+++H  AVR  +     + + LI MYSRC  L  A  +F    
Sbjct: 117 CNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMD 176

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ-H-- 429
              ++ + S++S +      E +A    +M + G++PN  T+ +IL  C RV   Q H  
Sbjct: 177 SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGY 236

Query: 430 -----------------------------------------------GKEFHCYILRRAM 442
                                                          G++ HC  ++  +
Sbjct: 237 LIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDL 296

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
             + + + N+L+ MY R+G V E +++ + +   D V++T+ I+     G G  A+ L  
Sbjct: 297 ITD-IRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLC 355

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M+     P+     +VLS+C+    + +G  QF  +    G   ++     ++++Y + 
Sbjct: 356 QMHSEGFTPNGYAFSSVLSSCADVASLDQGM-QFHCLALKLGCDSEICTGNALINMYSKC 414

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLL 588
           G +  A+     M +T     W +L+
Sbjct: 415 GQMGSARLAFDVM-HTHDVTSWNSLI 439


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 197/674 (29%), Positives = 326/674 (48%), Gaps = 72/674 (10%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN-NACFLVENSNIRYPLPW- 143
           K + + Q  Q+ +  I  G  K+     +L+ F       N N  + +  S+I  P  + 
Sbjct: 35  KCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQI-FSHIENPNGFI 93

Query: 144 -NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG-EMMDVDFGRVVHSCI 201
            N ++  Y++     +A+ VYK M    +  DN+TYP + ++C   + + D   +    +
Sbjct: 94  CNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVL 153

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY----------- 250
               +  +++ N L++MY   G +  AR++FD     D VSWN+M++ Y           
Sbjct: 154 KVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKD 213

Query: 251 --------------------ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
                                 KG  +EA +LF EM+++    ++++W+ +     +   
Sbjct: 214 VYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQK----DLVSWSALISCYEQNEM 269

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
           ++  L L   M      +D V  +  L ACS +  +  GK +HG  V+     Y N++NA
Sbjct: 270 YEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNA 329

Query: 351 LITMYS-------------------------------RCKDLRHAYILFKMTAEKSIITW 379
           LI MYS                               +C ++  A  LF    +K  ++W
Sbjct: 330 LIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSW 389

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           ++M+SGY   D   E+  LF+EM   G +P+   + S++  C  +A L  GK  H YI R
Sbjct: 390 SAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYI-R 448

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
           +     +++L  +L+ MY + G V +A  VF  +  +   T+ +LI G  + G    +LK
Sbjct: 449 KNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLK 508

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            F EM ++ + P+ +T VAVL AC H GLV EG + F  M   + I P ++H+ CMVDL 
Sbjct: 509 TFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLL 568

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
           GRAG+L +A+E+I  MP  P  + W  LLGAC+ + +   GE    KL+E  P++ G+ V
Sbjct: 569 GRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNV 628

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++N+YA+ G W  + +VR  MR  GV K PGC+ ++A      FL  D ++ Q + I  
Sbjct: 629 LLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEH 688

Query: 680 LLGGLTELMKDAGY 693
           +L  + + +K  GY
Sbjct: 689 MLDEMAKKLKLEGY 702



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 32/242 (13%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C ++  +  GK +H   + +G+E    L   L+  Y+S      A  L   S    
Sbjct: 295 VLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLD 354

Query: 140 PLPWNLLISLYVRDG-------------------------------FYAEALCVYKQMQS 168
            + WN +IS YV+ G                                + E L ++++MQ 
Sbjct: 355 QISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQI 414

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDV 227
              + D     SV+ AC  +  +D G+ +H+ I     + ++ +   L++MY K G V+ 
Sbjct: 415 EGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVED 474

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A  +F  + E+   +WN +I   A  GL  ++ + F EM+E GV  N IT+  + G C  
Sbjct: 475 ALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRH 534

Query: 288 TG 289
            G
Sbjct: 535 MG 536



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 12/262 (4%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A +   ++    F  ++I     D  +     +I  C  + AL QGK +HA     GL+
Sbjct: 396 YAQQDRFTETLVLFQEMQIEGTKPDETI--LVSVISACTHLAALDQGKWIHAYIRKNGLK 453

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N +L   L+  Y       +A  + +    +    WN LI     +G   ++L  + +M
Sbjct: 454 INIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEM 513

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV--HNALVSMYGKFGQ 224
           +   +  +  T+ +VL AC  M  VD G    + +   H+    +  +  +V + G+ G 
Sbjct: 514 KEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGM 573

Query: 225 VDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           +  A  L + M +  D  +W  ++ A   Y      +   +  VE+  +    NV+  N 
Sbjct: 574 LKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNI 633

Query: 281 IAGGCLRTGNFKGVLELLSRMR 302
            A      GN+  VLE+   MR
Sbjct: 634 YAS----KGNWVDVLEVRGMMR 651


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/653 (28%), Positives = 335/653 (51%), Gaps = 41/653 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ FA  G    A  A+  +    A  D    +F  ++ CC ++ AL +G+  H+ AI L
Sbjct: 79  IRGFADAGLPEAALAAYRAMLAAGARPDRF--TFPVVVKCCARLGALEEGRAAHSAAIRL 136

Query: 104 GLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           GL  + V     L+ FYA   +  +A  + +   +R  + WN ++  YV +G  A AL  
Sbjct: 137 GLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDC 196

Query: 163 YKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           +++M +  +++ D     + L AC     +  GR VH+  I    E  + V  +L+ MY 
Sbjct: 197 FREMHEGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYC 256

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G +  A  +F  M  R                                    V+TWN 
Sbjct: 257 KCGAIASAEGMFATMPSR-----------------------------------TVVTWNC 281

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           + GG    G  +   +   +M+ +   ++ V  +  L AC+   +   G+ +HG   R  
Sbjct: 282 MIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQ 341

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +  +  +  AL+ MYS+   ++ +  +F     K++++WN+M++ Y + +   E+  LF 
Sbjct: 342 FLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFL 401

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           E+    + P+Y T+++++P    +  L+  ++ H YI+R   + E+ L+ N+++ MYAR 
Sbjct: 402 ELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLD-YGENTLVTNAVMHMYARC 460

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G V  ++ +FD M+ +D +++ ++I GY I G+G++AL++F EM  N ++P+  T V+VL
Sbjct: 461 GDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVL 520

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
           +ACS SG+  EG  QF  M   YGI PQ+EH+ CM DL GRAG L +  + I  +P TPT
Sbjct: 521 TACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPT 580

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
             +W +LL A +   +  I E+AAE++ E   +N+G YV++++MYA  G W+ + ++R+ 
Sbjct: 581 FRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILSSMYADAGRWEDVQRIRSS 640

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           M + G+R+    + V+       F+  D ++ Q++ I+ +   L+  + +  Y
Sbjct: 641 MMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSKTIHEVSDVLSRKIGETDY 693



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 139/511 (27%), Positives = 235/511 (45%), Gaps = 49/511 (9%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID- 202
           N++I  +   G    AL  Y+ M +   R D FT+P V+K C  +  ++ GR  HS    
Sbjct: 76  NVVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIR 135

Query: 203 -ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                  ++  N+L++ Y K G V  A R+FD M  RD V+WN+M+  Y S GL   A  
Sbjct: 136 LGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALD 195

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
            F EM  EG++V                                   D V  +  L AC 
Sbjct: 196 CFREMH-EGLQVQ---------------------------------HDGVGIIAALAACC 221

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
              AL  G+E+H   +R    +   V  +L+ MY +C  +  A  +F     ++++TWN 
Sbjct: 222 LDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNC 281

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+ GY    C EE+   F +M   G +   VT  ++L  CA+  +  +G+  H Y+  R+
Sbjct: 282 MIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVT-RS 340

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            F  H++L  +L+EMY++ GKV  ++++F  M+ +  V++ ++IA Y  +     A+ LF
Sbjct: 341 QFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLF 400

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI-YGIFPQLEHFACMVDLYG 560
            E+    + PD+ TM AV+ A    GL+ + ++    +  + YG    + +   ++ +Y 
Sbjct: 401 LELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTN--AVMHMYA 458

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE----NSG 616
           R G +  +++I  KM      + W T++    IH   G G+ A E   E +      N  
Sbjct: 459 RCGDVVSSRKIFDKMAGKDVIS-WNTIIMGYAIH---GQGKIALEMFSEMKSNGLQPNES 514

Query: 617 YYVLIANMYAATGCWDK-LAKVRTCMRDLGV 646
            +V +    + +G  D+   +     RD G+
Sbjct: 515 TFVSVLTACSVSGMADEGWIQFNLMQRDYGI 545


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 201/643 (31%), Positives = 332/643 (51%), Gaps = 35/643 (5%)

Query: 79  HIIFCCGKVKALAQGKQLHA-CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI 137
           HII  C  +K+L   K +HA   I   +  +  ++ KL+  Y+ F   + A  + +    
Sbjct: 7   HIIHNCKTLKSL---KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQ 63

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
                W  LI  YV +  Y EA  ++ QM+   I   NFT  SVLKA   +     G+ V
Sbjct: 64  PNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAV 123

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           +   +     + L V N+++ ++ +  +VD AR+ FD+M E+D VSWN MIS Y +    
Sbjct: 124 YGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRV 183

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE--TYLDSVATV 314
             A + F  M E     NV++W ++  G ++ G+      L   M  ++  ++   V+  
Sbjct: 184 DIARKFFDRMPER----NVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGY 239

Query: 315 IGLGACSHVGALKLGKEIHGSA-----VRG-CY-GEYENVRNALITM------------- 354
           + +G C +   +     IH +      + G C  GE E+ ++    M             
Sbjct: 240 MDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLD 299

Query: 355 -YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
            Y +  D   A  LF     K+++TW++M+ GY       ++  LF       ++P+   
Sbjct: 300 GYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETF 359

Query: 414 IASILPLCARVANLQHGKEF-HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           I  I+  C+++  +   +   H Y+    +    L ++ SL++MYA+ G + +A  +F++
Sbjct: 360 ILGIISACSQLGIIDAAESIIHNYVGPSLL--SDLRVFTSLIDMYAKCGSIEKALQMFEM 417

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
              +D + Y+++IA     G GR A+ LF++M +  IKPD VT + VL+AC+H GLV EG
Sbjct: 418 AHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEG 477

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           +K F++MT  +GI P  +H+AC+VDL GR G L +A  +I  MP  P S +W  LL AC+
Sbjct: 478 RKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACR 537

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           +H N  + E AA +L +  P+NSG Y+L++N+YAA G W  +AKVR  +R+  VRK  G 
Sbjct: 538 VHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGS 597

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
           +W++  +V   F++ D S+  +  I  +L  L E MK +GY++
Sbjct: 598 SWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMKLSGYLI 640



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 1/159 (0%)

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           IL +      L+  K  H  +L  +       + N L+ +Y+R G    A  VFD +++ 
Sbjct: 5   ILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           +   +TSLI GY    +   A  LF +M +  I   + T+ +VL A +       GQ  +
Sbjct: 65  NAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY 124

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
             +   YG    L     ++DL+ R   ++ A++   +M
Sbjct: 125 GFVLK-YGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEM 162


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/554 (32%), Positives = 304/554 (54%), Gaps = 29/554 (5%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN LI+   R G   E+L  +  M+   I+ +  T+P  +K+C  + D++ G+  H   +
Sbjct: 50  WNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQAL 109

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               E  LFV +AL+ MY K G++  AR LFD++  R+ V+W ++I+ Y       EA  
Sbjct: 110 VFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALM 169

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F E   E  E                GN + V           T +DSVA +  L ACS
Sbjct: 170 VFKEFLFEKSE----------------GNGEEV----------GTSVDSVAMISVLSACS 203

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            V    + + +HG A++    +   V N L+  Y++C ++  +  +F   AEK +++WNS
Sbjct: 204 RVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNS 263

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           M++ Y     + ++  +F  M ++G  + N VT++++L  CA    L+ G   H  +++ 
Sbjct: 264 MIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKM 323

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
              N ++++  S+++MY + G+   A++ FD M  ++  ++T++IAGYG+ G  R AL +
Sbjct: 324 GYVN-NVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDV 382

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F +M    +KP+++T ++VL+ACSH+G + EG + F  M+  Y + P +EH+ CMVDL G
Sbjct: 383 FYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLG 442

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           RAG + +A  +I  M       +W +LL AC+IH++  + E +A +L +  P N GYYVL
Sbjct: 443 RAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVL 502

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           +AN+YA  G W  + ++R  ++D G+ K PG + V+       FLV D  + Q ++IY  
Sbjct: 503 LANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKY 562

Query: 681 LGGLTELMKDAGYV 694
           L  L+  +++AGYV
Sbjct: 563 LEELSVKLQEAGYV 576



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 211/465 (45%), Gaps = 47/465 (10%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           + + A  G+  ++  AF+ +R      +    +F   I  C  +  L  GKQ H  A+  
Sbjct: 54  IAELARGGDSCESLRAFSWMRKLDIKPN--RSTFPCAIKSCSALFDLNSGKQAHQQALVF 111

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G E +  +   L+  Y+     +NA  L +    R  + W  LI+ YV++    EAL V+
Sbjct: 112 GFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVF 171

Query: 164 KQMQSRRIRG---------DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHN 213
           K+    +  G         D+    SVL AC  + +      VH   I    +  + V N
Sbjct: 172 KEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVEN 231

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
            L+  Y K G+V ++R++FD M E+D VSWN+MI+ YA  GL  +AF++F  M + G   
Sbjct: 232 TLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAG--- 288

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                    GG                 +  E  L ++     L AC+H GAL++G  +H
Sbjct: 289 ---------GG-----------------KYNEVTLSTL-----LLACAHEGALRVGMCLH 317

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              ++  Y     +  ++I MY +C     A   F    EK++ +W +M++GY     A 
Sbjct: 318 DQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAR 377

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  +F +M  +GV+PNY+T  S+L  C+    L+ G  +   +         +  +  +
Sbjct: 378 EALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCM 437

Query: 454 VEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVA 497
           V++  R+G + EA ++   M  RRD V + SL+A   I  +  +A
Sbjct: 438 VDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELA 482



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 158/331 (47%), Gaps = 13/331 (3%)

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           +V +WN++     R G+    L   S MR  +   +       + +CS +  L  GK+ H
Sbjct: 46  DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAH 105

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
             A+   +     V +ALI MYS+C  L +A +LF     ++I+TW S+++GY   D A 
Sbjct: 106 QQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAH 165

Query: 394 ESAFLFREMF---------RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           E+  +F+E             G   + V + S+L  C+RV+N    +  H   ++  + +
Sbjct: 166 EALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGL-D 224

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
           + + + N+L++ YA+ G+V  ++ VFD M+ +D V++ S+IA Y   G    A ++F  M
Sbjct: 225 KVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGM 284

Query: 505 NK-NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
            K    K + VT+  +L AC+H G +  G    +++  + G    +     ++D+Y + G
Sbjct: 285 LKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKM-GYVNNVIMATSIIDMYCKCG 343

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
               A+     M      + W  ++    +H
Sbjct: 344 QAEMARNAFDGMKEKNVRS-WTAMIAGYGMH 373



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            R D  ++ SLIA     G+   +L+ F  M K  IKP+  T    + +CS +   +   
Sbjct: 43  DRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCS-ALFDLNSG 101

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           KQ  +   ++G    L   + ++D+Y + G L+ A+ +  ++P       W +L+
Sbjct: 102 KQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNI-VTWTSLI 155


>gi|357450559|ref|XP_003595556.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484604|gb|AES65807.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1040

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 190/594 (31%), Positives = 315/594 (53%), Gaps = 48/594 (8%)

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H   + LG++   ++   L+  Y     + N   LVE  ++     WN LI      G  
Sbjct: 143 HGHVVKLGMDAFDLVGNTLIELYG----FLNGNGLVERKSVTKLNFWNNLIYEAYESGKI 198

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA---CHEWSLFVHN 213
            E+  ++ +M++  ++ ++ T  ++L+A  E   +  G+V+HS + A   C E  L V+ 
Sbjct: 199 VESFELFCRMRNENVQPNSVTLINLLRATVESNSLKIGKVLHSLVVASNLCKE--LTVNT 256

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           AL+SMY K   +  AR +F+KM E+D V WN MIS Y+  G  KE+ +L   M   G+  
Sbjct: 257 ALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMISVYSGSGCPKESLELVYCMVRSGIRP 316

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           ++ T                                    +  + + + + +++ GK++H
Sbjct: 317 DMFT-----------------------------------AIPAISSITKLKSIEWGKQLH 341

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              +R       +V N+L+ MYS C DL  A  +F +  ++++++W++M+ GY   D   
Sbjct: 342 AQVIRNGSDYQVSVHNSLVDMYSTCADLNSARKIFGLIKDRTVVSWSAMIKGYAMHDNCL 401

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LF EM  SG + + V + +ILP  A++  L +    H Y L+  + +    L  SL
Sbjct: 402 EALSLFIEMKLSGTKVDLVIVINILPAFAKIGALHYVGYLHGYSLKTNL-DSLKSLKTSL 460

Query: 454 VEMYARSGKVPEAKSVF--DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +  YA+ G +  A+ +F  +  S +D V + S+I  Y   GE     +L+ ++  + +KP
Sbjct: 461 LNSYAKCGCIEMARKLFNEEKSSLKDIVAWNSMITAYSNHGEWFQCFELYNQIKLSIVKP 520

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           DHVT + +L+AC +SGLV +G++ F+ M  IYG  P  EH ACMVDL GRAG +++A++I
Sbjct: 521 DHVTFLGMLTACVNSGLVDKGKEIFKEMVDIYGFQPSKEHNACMVDLLGRAGKIDEARKI 580

Query: 572 ITKMPYTPTSAMWATLLGACQIH-RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
           I        + ++  LL AC++H   T   E AAEKL++  PEN   YVL++N++AA G 
Sbjct: 581 IETNQLNSDARVYGPLLSACKMHGLETDFAELAAEKLIKMEPENPANYVLLSNIFAAAGK 640

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           WDK AK+R+ +RD G++K PGC+WV     F  F V D S+ ++++IY +L  L
Sbjct: 641 WDKFAKMRSFLRDRGLKKTPGCSWVVLDGQFHEFRVADHSHPRSEDIYSVLKVL 694



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 220/472 (46%), Gaps = 77/472 (16%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL--YNNACF- 130
            ++ + I+  C K + L   +Q+HA     GL +N  L  KL+  Y++F L  +++  F 
Sbjct: 21  FNTTSSILNLCTKPQYL---QQIHARFFLHGLHQNSSLSSKLIDSYSNFGLLHFSHKIFS 77

Query: 131 LVENSNIRYPLPWNLLISLYVRDGF----YAEALCVYKQMQSRRIRGDNFTYPSVLKAC- 185
             EN       P +++ + ++R+ F    Y + L +YK+M  + +  D     SVLK+  
Sbjct: 78  FTEN-------PDSIIYNAFLRNLFMFGEYEKTLFLYKEMVQKSMCPDEDCCFSVLKSLF 130

Query: 186 ------GEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD 239
                 G +M +  G VV   +DA       V N L+ +YG            + ++ER 
Sbjct: 131 YVFHEKGLIM-MAHGHVVKLGMDAFD----LVGNTLIELYGFLNG--------NGLVERK 177

Query: 240 AVS----WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           +V+    WN +I      G   E+F+LF  M+ E V+ N +T                  
Sbjct: 178 SVTKLNFWNNLIYEAYESGKIVESFELFCRMRNENVQPNSVT------------------ 219

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            L++ +R         ATV          +LK+GK +H   V     +   V  AL++MY
Sbjct: 220 -LINLLR---------ATV-------ESNSLKIGKVLHSLVVASNLCKELTVNTALLSMY 262

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++   L+ A ++F+   EK ++ WN M+S Y+   C +ES  L   M RSG+ P+  T  
Sbjct: 263 AKLDSLKDARLMFEKMPEKDVVVWNIMISVYSGSGCPKESLELVYCMVRSGIRPDMFTAI 322

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
             +    ++ +++ GK+ H  ++R    +  + + NSLV+MY+    +  A+ +F L+  
Sbjct: 323 PAISSITKLKSIEWGKQLHAQVIRNGS-DYQVSVHNSLVDMYSTCADLNSARKIFGLIKD 381

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           R  V+++++I GY +      AL LF EM  +  K D V ++ +L A +  G
Sbjct: 382 RTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSGTKVDLVIVINILPAFAKIG 433



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 204/450 (45%), Gaps = 49/450 (10%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G + ++FE F R+R      + V  +  +++    +  +L  GK LH+  +A  L K   
Sbjct: 196 GKIVESFELFCRMRNENVQPNSV--TLINLLRATVESNSLKIGKVLHSLVVASNLCKELT 253

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L++ YA      +A  + E    +  + WN++IS+Y   G   E+L +   M    
Sbjct: 254 VNTALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMISVYSGSGCPKESLELVYCMVRSG 313

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           IR D FT    + +  ++  +++G+ +H+  I    ++ + VHN+LV MY     ++ AR
Sbjct: 314 IRPDMFTAIPAISSITKLKSIEWGKQLHAQVIRNGSDYQVSVHNSLVDMYSTCADLNSAR 373

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           ++F  + +R  VSW+ MI  YA      EA  LF+EM+  G +V+++    I        
Sbjct: 374 KIFGLIKDRTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSGTKVDLVIVINI-------- 425

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                                      L A + +GAL     +HG +++      ++++ 
Sbjct: 426 ---------------------------LPAFAKIGALHYVGYLHGYSLKTNLDSLKSLKT 458

Query: 350 ALITMYSRCKDLRHAYILF--KMTAEKSIITWNSMLSGYTH----LDCAEESAFLFREMF 403
           +L+  Y++C  +  A  LF  + ++ K I+ WNSM++ Y++      C E    L+ ++ 
Sbjct: 459 SLLNSYAKCGCIEMARKLFNEEKSSLKDIVAWNSMITAYSNHGEWFQCFE----LYNQIK 514

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
            S V+P++VT   +L  C     +  GKE    ++    F         +V++  R+GK+
Sbjct: 515 LSIVKPDHVTFLGMLTACVNSGLVDKGKEIFKEMVDIYGFQPSKEHNACMVDLLGRAGKI 574

Query: 464 PEAKSVFDLMS-RRDEVTYTSLIAGYGIQG 492
            EA+ + +      D   Y  L++   + G
Sbjct: 575 DEARKIIETNQLNSDARVYGPLLSACKMHG 604



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 109/253 (43%), Gaps = 17/253 (6%)

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           ++IH         +  ++ + LI  YS    L  ++ +F  T     I +N+ L      
Sbjct: 38  QQIHARFFLHGLHQNSSLSSKLIDSYSNFGLLHFSHKIFSFTENPDSIIYNAFLRNLFMF 97

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF----HCYILRRAMFNE 445
              E++ FL++EM +  + P+     S+L     V    H K      H ++++  M + 
Sbjct: 98  GEYEKTLFLYKEMVQKSMCPDEDCCFSVLKSLFYVF---HEKGLIMMAHGHVVKLGM-DA 153

Query: 446 HLLLWNSLVEMYA--RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
             L+ N+L+E+Y       + E KSV  L +  + + Y +  +G  ++     + +LF  
Sbjct: 154 FDLVGNTLIELYGFLNGNGLVERKSVTKL-NFWNNLIYEAYESGKIVE-----SFELFCR 207

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M    ++P+ VT++ +L A   S  +  G K    +     +  +L     ++ +Y +  
Sbjct: 208 MRNENVQPNSVTLINLLRATVESNSLKIG-KVLHSLVVASNLCKELTVNTALLSMYAKLD 266

Query: 564 LLNKAKEIITKMP 576
            L  A+ +  KMP
Sbjct: 267 SLKDARLMFEKMP 279


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 190/582 (32%), Positives = 299/582 (51%), Gaps = 66/582 (11%)

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYP 179
           ++F L++  C        R  + WN +IS YV +G     L +YKQM    I  D  T  
Sbjct: 203 SAFELFDKLC-------DRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 255

Query: 180 SVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER 238
           SVL  C     +  G+ VHS  I +  E  +   N L+ MY K G +D A R        
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALR-------- 307

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
                                  +F +M E     NV++W ++  G  R G   G ++LL
Sbjct: 308 -----------------------VFEKMGER----NVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
            +M  +   LD VA    L AC+  G+L  GK++H             V NAL+ MY++C
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC 400

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
             +  A  +F     K II+WN+M+                       ++P+  T+A +L
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACVL 439

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
           P CA ++ L+ GKE H YILR   ++    + N+LV++Y + G +  A+ +FD++  +D 
Sbjct: 440 PACASLSALERGKEIHGYILRNG-YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           V++T +IAGYG+ G G  A+  F EM    I+PD V+ +++L ACSHSGL+ +G + F  
Sbjct: 499 VSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYI 558

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
           M + + I P+LEH+ACMVDL  R G L+KA E I  +P  P + +W  LL  C+ + +  
Sbjct: 559 MKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIE 618

Query: 599 IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
           + E  AE++ E  PENSGYYVL+AN+YA    W+++ ++R  +   G+RK PGC+W++  
Sbjct: 619 LAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678

Query: 659 NVFSPFLV-DDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
              + F+  +++S+  ++ I  LL  +   MK+ G+  K ++
Sbjct: 679 GKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKY 720



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/461 (29%), Positives = 219/461 (47%), Gaps = 62/461 (13%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL----VSMYGKFGQVDVARRLF 232
           TY SVL+ C  +     G+ VHS I +    S+ V  AL    VS Y   G +   RR+F
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSN---SVGVDEALGLKLVSFYATCGDLKEGRRVF 157

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE----------------VNVI 276
           D M +++   WN M+S YA  G +KE+  LF  M E+G+E                 +VI
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           +WN++  G +  G  +  L +  +M      +D    +  L  C++ G L LGK +H  A
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  +    N  N L+ MYS+C DL  A  +F+   E+++++W SM++GYT    ++ + 
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAI 337

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            L ++M + GV+ + V I SIL  CAR  +L +GK+ H YI    M   +L + N+L++M
Sbjct: 338 KLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM-ESNLFVCNALMDM 396

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G +  A SVF  M  +D +++ ++I                      ++KPD  TM
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTM 435

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGI-----FPQLEHFA-CMVDLYGRAGLLNKAKE 570
             VL AC+            ER   I+G      +    H A  +VDLY + G+L  A+ 
Sbjct: 436 ACVLPACA-------SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 488

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +   +P +     W  ++    +H   G G  A     E R
Sbjct: 489 LFDMIP-SKDLVSWTVMIAGYGMH---GYGNEAIATFNEMR 525



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 195/440 (44%), Gaps = 66/440 (15%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           DV L +   ++  C     L+ GK +H+ AI    E+       L+  Y+     + A  
Sbjct: 248 DVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALR 307

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           + E    R  + W  +I+ Y RDG    A+ + +QM+   ++ D     S+L AC     
Sbjct: 308 VFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGS 367

Query: 191 VDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +D G+ VH  I A + E +LFV NAL+ MY K G ++ A  +F  M+ +D +SWNTMI  
Sbjct: 368 LDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG- 426

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
                                                         EL    RT    L 
Sbjct: 427 ----------------------------------------------ELKPDSRTMACVLP 440

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           +         C+ + AL+ GKEIHG  +R  Y    +V NAL+ +Y +C  L  A +LF 
Sbjct: 441 A---------CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD 491

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
           M   K +++W  M++GY       E+   F EM  +G+EP+ V+  SIL  C+    L+ 
Sbjct: 492 MIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQ 551

Query: 430 GKEFHCYILRRAMFN--EHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIA 486
           G  F  YI++   FN    L  +  +V++ +R+G + +A    + +    D   + +L+ 
Sbjct: 552 GWRFF-YIMKND-FNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLC 609

Query: 487 G----YGIQGEGRVALKLFE 502
           G    + I+   +VA ++FE
Sbjct: 610 GCRNYHDIELAEKVAERVFE 629


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 278/502 (55%), Gaps = 20/502 (3%)

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           D   E ++    A+V+ Y K   ++ ARR FD M ER  VSWN M+S YA  GL +E  +
Sbjct: 187 DVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLR 246

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF EM   G+E +  TW T+   C   G+      L+  +  ++  L+       L   +
Sbjct: 247 LFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYA 306

Query: 322 HVGALKLGKEIHGSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
             G++   + I         G Y N    NA+I+ Y+R  +L  A  LF     ++++TW
Sbjct: 307 KCGSIGAARRIFDE-----LGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTW 361

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           NSM++GY     +  +  LF+EM  +  + P+ VT+ S++  C  +  L+ G     +++
Sbjct: 362 NSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGN----WVV 417

Query: 439 RRAMFNEHLLL---WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           R    N+  L     N+++ MY+R G + +AK VF  M+ RD V+Y +LI+G+   G G 
Sbjct: 418 RFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGV 477

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A+ L   M +  I+PD VT + VL+ACSH+GL+ EG+K FE +       P ++H+ACM
Sbjct: 478 EAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACM 532

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VDL GR G L  AK  + +MP  P + ++ +LL A +IH+   +GE AA KL E  P+NS
Sbjct: 533 VDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNS 592

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G ++L++N+YA+ G W  + ++R  M+  GV+K  G +WV+ G     F+V D S+ ++ 
Sbjct: 593 GNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSD 652

Query: 676 EIYPLLGGLTELMKDAGYVVKE 697
           +IY LL  L + M++AGY+  +
Sbjct: 653 DIYQLLIELRKKMREAGYIADK 674



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 140/360 (38%), Gaps = 82/360 (22%)

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH-AYILFKMTAEKSIITW 379
           S VG     +++H   +      +      LI   +R +   H  ++LF  T   ++  +
Sbjct: 9   SRVGNFSHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVF 68

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
            SML  Y+HL    +   +F  M   GV P+    A + P+  + A    G  FH ++L+
Sbjct: 69  TSMLRFYSHLQDHAKVVLMFEHMQGCGVRPD----AFVYPILIKSAG-NGGIGFHAHVLK 123

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD---------------------------- 471
               ++  +  N++++MYAR G +  A+ VFD                            
Sbjct: 124 LGHGSDAFVR-NAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQA 182

Query: 472 -----LMSRRDEVTYTSLI-------------------------------AGYGIQGEGR 495
                +M  R+ +T+T+++                               +GY   G   
Sbjct: 183 QWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE 242

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF--A 553
             L+LF+EM    I+PD  T V V+SACS  G   +       + +++    QL  F   
Sbjct: 243 EVLRLFDEMVNAGIEPDETTWVTVISACSSRG---DPCLAASLVRTLHQKQIQLNCFVRT 299

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW-AAEKLLETRP 612
            ++D+Y + G +  A+ I  ++     S  W  ++ A      T +G   +A +L  T P
Sbjct: 300 ALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAY-----TRVGNLDSARELFNTMP 354


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 202/668 (30%), Positives = 325/668 (48%), Gaps = 48/668 (7%)

Query: 35  IMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGK 94
           ++  N+L  +  + G G   KA   F+  R+     D    S+A ++  CG++K  A GK
Sbjct: 75  VISYNIL--ISGYGGMGFYHKAIGLFSEARMACLKLDKF--SYAGVLSACGQIKDFALGK 130

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
            +H  AI  GL +   L   L+  Y      ++A  L E+S+    + WN LI+ Y R G
Sbjct: 131 VIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVG 190

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD--VDFGRVVHS-CIDACHEWSLFV 211
            Y E L +  +M    +R + FT  S LK+C   ++  V +G+ +H   +    +  + V
Sbjct: 191 AYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVV 250

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA-----SKGLWKEAFQLFVEM 266
             AL+ MY K G +  A +LF     ++ V +N MI+ +       K    EA +LF +M
Sbjct: 251 GTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQM 310

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
           Q +G++ +  T+++I                                   +  C+H+ A 
Sbjct: 311 QRQGIKPSDFTFSSI-----------------------------------IKICNHIEAF 335

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           + GK+IH    +      E + + LI +YS           F  T +  I++W +M++GY
Sbjct: 336 EYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGY 395

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                 E +  LF E+  SG +P+   I ++L  CA VA  + G++ H Y ++  +    
Sbjct: 396 AQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGI-GTL 454

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
            ++ NS + MYA+SG +  AK  F+ +   D V+++ +I      G  + A+ LFE M  
Sbjct: 455 AIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKS 514

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             I P+ +T + VL+ACSH GLV EG + +E M   Y +   ++H  C+VDL  RAG L 
Sbjct: 515 YGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLL 574

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
            AK  I    +     MW TLL  C+I+++   G+  AEKL+E  P+ S  YVL+ N+Y 
Sbjct: 575 DAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYT 634

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
             G      K+R  M+D G+RK PG +W++ GN    F+V D S+  +Q IY  L G+ E
Sbjct: 635 DAGIDLPATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLE 694

Query: 687 LMKDAGYV 694
             +  GY+
Sbjct: 695 KKRKIGYI 702



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 251/527 (47%), Gaps = 52/527 (9%)

Query: 74  LDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           LDS A+  ++    K  +   GK  HA  I         L+   +  Y+ +    NA  L
Sbjct: 7   LDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKL 66

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +  + R  + +N+LIS Y   GFY +A+ ++ + +   ++ D F+Y  VL ACG++ D 
Sbjct: 67  FDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDF 126

Query: 192 DFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+V+H     C     +F+ N L+ MY K  ++D AR LF+   E D VSWN++I+ Y
Sbjct: 127 ALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGY 186

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           A  G ++E  +L V+M   G+ +N  T  +    C    N                    
Sbjct: 187 ARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLN-------------------- 226

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                          +  GK +HG  V+        V  AL+ MY++   L  A  LF+ 
Sbjct: 227 -------------NMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRT 273

Query: 371 TAEKSIITWNSMLSGYTHL-----DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
           +  ++++ +N+M++G+        +CA E+  LF +M R G++P+  T +SI+ +C  + 
Sbjct: 274 SPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIE 333

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
             ++GK+ H +I +  + ++   + ++L+E+Y+  G   +    F+   + D V++T++I
Sbjct: 334 AFEYGKQIHAHICKHNIQSDE-FIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMI 392

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
           AGY   G+   AL LF E+  +  KPD   +  +LSAC+     V  ++  E++   Y +
Sbjct: 393 AGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACAD----VAAERSGEQVHG-YAV 447

Query: 546 FPQLEHFACM----VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
              +   A +    + +Y ++G L+ AK    ++   P    W+ ++
Sbjct: 448 KTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIK-NPDVVSWSVMI 493


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 298/546 (54%), Gaps = 42/546 (7%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           +Q   I+ D   Y  +L  C     V  G+ VH+  I  C+   +++   L+ +Y K   
Sbjct: 3   IQGPEIKFDG--YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  AR +FD+M ER+ VSW  MIS Y+ +G   EA  LFV+M     E N  T+ T+   
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATV--- 117

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           L +C+     +LG++IH    +  Y  +
Sbjct: 118 --------------------------------LSSCTGFSGFELGRQIHSHIFKRNYENH 145

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V ++L+ MY++   +  A  +F+   E+ +++  +++SGY  L   EE+  LF  + R
Sbjct: 146 IFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQR 205

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G+  NYVT AS+L   + +A L HGK+ H ++LR      +++L NSL++MY++ G + 
Sbjct: 206 EGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR-CELPFYVVLQNSLIDMYSKCGNLN 264

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSAC 523
            A+ +F+ M  R  +++ +++ GY   G+G   +KLF+ M  +N++KPD VT +AVLS C
Sbjct: 265 YARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGC 324

Query: 524 SHSGLVVEGQKQF-ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           SH GL  +G + F E M     I   +EH+ C++DL GRAG + +A E+I KMP+ PT+A
Sbjct: 325 SHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAA 384

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W +LLGAC++H NT IGE+   +LLE  PEN+G YV+++N+YA+ G W+ +  VR  M 
Sbjct: 385 IWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMM 444

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSE 702
           +  V K PG +W++       F   D S+ + +E++  +  L    K++GY V ++ C  
Sbjct: 445 EKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGY-VPDQSCVL 503

Query: 703 EEIVEE 708
            ++ EE
Sbjct: 504 YDVDEE 509



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 194/417 (46%), Gaps = 59/417 (14%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           ++  D +  ++  C   +A+ +G+++HA  I         L  +L+  Y        A  
Sbjct: 7   EIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARH 66

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           + +    R  + W  +IS Y + GF +EAL ++ QM       + FT+ +VL +C     
Sbjct: 67  VFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSG 126

Query: 191 VDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
            + GR +HS I    +E  +FV ++L+ MY K G++  AR +F+ + ERD VS   +IS 
Sbjct: 127 FELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 186

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           YA  GL +EA +LF  +Q EG+  N +T+ ++                            
Sbjct: 187 YAQLGLDEEALELFCRLQREGMSSNYVTYASL---------------------------- 218

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
                  L A S + AL  GK++H   +R     Y  ++N+LI MYS+C +L +A  +F 
Sbjct: 219 -------LTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFN 271

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQ 428
               +++I+WN+ML GY+      E   LF+ M     V+P+ VT  ++L  C+      
Sbjct: 272 NMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLED 331

Query: 429 HGKEFHCYILRRAMFNEHL----------LLWNSLVEMYARSGKVPEAKSVFDLMSR 475
            G E         MF+E +            +  ++++  R+G+V EA   F+L+ +
Sbjct: 332 KGLE---------MFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEA---FELIKK 376



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 122/260 (46%), Gaps = 4/260 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  ++ RG  S+A   F ++  +    +    +FA ++  C        G+Q+H+     
Sbjct: 83  ISGYSQRGFASEALHLFVQMLRSDTEPNEF--TFATVLSSCTGFSGFELGRQIHSHIFKR 140

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
             E +  +   L+  YA     + A  + E    R  +    +IS Y + G   EAL ++
Sbjct: 141 NYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELF 200

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKF 222
            ++Q   +  +  TY S+L A   +  +D G+ VHS +  C   + + + N+L+ MY K 
Sbjct: 201 CRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKC 260

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG-VEVNVITWNTI 281
           G ++ AR++F+ M  R  +SWN M+  Y+  G   E  +LF  M+EE  V+ + +T+  +
Sbjct: 261 GNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAV 320

Query: 282 AGGCLRTGNFKGVLELLSRM 301
             GC   G     LE+   M
Sbjct: 321 LSGCSHGGLEDKGLEMFDEM 340


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 176/578 (30%), Positives = 300/578 (51%), Gaps = 41/578 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F+  +  C +++ L  GK++H C +      + V++  L+  YA      +A  +  +  
Sbjct: 145 FSKALKACTELQDLDNGKKIH-CQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDIT 203

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           +R  + W  +I+ YV++    E L ++ +M+   + G+ +TY +++ AC ++  +  G+ 
Sbjct: 204 LRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKW 263

Query: 197 VHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            H C + +  E S  +  +L+ MY K G +  ARR+F++    D V W  MI  Y     
Sbjct: 264 FHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYT---- 319

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                                            G+    L L  +M+  E   + V    
Sbjct: 320 -------------------------------HNGSVNEALSLFQKMKGVEIKPNCVTIAS 348

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMTAEK 374
            L  C  +  L+LG+ +HG +++   G ++ NV NAL+ MY++C   R A  +F+M +EK
Sbjct: 349 VLSGCGLIENLELGRSVHGLSIK--VGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEK 406

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            I+ WNS++SG++      E+ FLF  M    V PN VT+AS+   CA + +L  G   H
Sbjct: 407 DIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLH 466

Query: 435 CYILRRAMF-NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
            Y ++     +  + +  +L++ YA+ G    A+ +FD +  ++ +T++++I GYG QG+
Sbjct: 467 AYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGD 526

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              +L+LFEEM K Q KP+  T  ++LSAC H+G+V EG+K F  M   Y   P  +H+ 
Sbjct: 527 TIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYT 586

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVD+  RAG L +A +II KMP  P    +   L  C +H    +GE   +K+L+  P+
Sbjct: 587 CMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPD 646

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
           ++ YYVL++N+YA+ G W++  +VR  M+  G+ KI G
Sbjct: 647 DASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAG 684



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 210/453 (46%), Gaps = 48/453 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV-EN 134
           ++  +I  C K+ AL QGK  H C +  G+E +  LV  L+  Y      +NA  +  E+
Sbjct: 244 TYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEH 303

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           S++   + W  +I  Y  +G   EAL ++++M+   I+ +  T  SVL  CG + +++ G
Sbjct: 304 SHVDLVM-WTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELG 362

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           R VH        W   V NALV MY K  Q   A+ +F+   E+D V+WN++IS ++  G
Sbjct: 363 RSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNG 422

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF  M  E V  N +T                V  L S               
Sbjct: 423 SIHEALFLFHRMNSESVTPNGVT----------------VASLFS--------------- 451

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTA 372
               AC+ +G+L +G  +H  +V+  +    +V    AL+  Y++C D + A ++F    
Sbjct: 452 ----ACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIE 507

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           EK+ ITW++M+ GY        S  LF EM +   +PN  T  SIL  C     +  GK+
Sbjct: 508 EKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKK 567

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV-TYTSLIAGYGIQ 491
           +   + +   F      +  +V+M AR+G++ +A  + + M  + +V  + + + G G+ 
Sbjct: 568 YFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMH 627

Query: 492 GE---GRVALKLFEEMNKNQIKPDHVTMVAVLS 521
                G + +K   +++     PD  +   ++S
Sbjct: 628 SRFDLGEIVIKKMLDLH-----PDDASYYVLVS 655


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 189/608 (31%), Positives = 319/608 (52%), Gaps = 53/608 (8%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTF----YASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           KQ+HA  +   + K   L+ K++      YAS  ++N    L + +   + +    L + 
Sbjct: 50  KQIHAQMLINSIPKPNFLLSKIIDLKDLAYASL-VFNQ---LTKPNIYAFNVMLRGLATT 105

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWS 208
           + +  F  E   +Y +++S  ++ +NFTYP +  ACG +  +  G++ H  +  A  +  
Sbjct: 106 WKKYDFCVE---LYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGD 162

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
            +V+++L++MY + G++  AR++FD+M +RD                             
Sbjct: 163 EYVNHSLITMYARCGEMGFARKVFDEMGDRD----------------------------- 193

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                 +++WN++  G  + G  K  + L   MR +    D +  V  LGAC  +G L L
Sbjct: 194 ------LVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGL 247

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+ + G  +         + +ALI MY +C DL  A  +F     K ++TWN++++GY  
Sbjct: 248 GRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQ 307

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
              + E+  LF  M  +G  P+ VT+  +L  C+ +  L  GK    +   + + ++ + 
Sbjct: 308 NGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHD-VY 366

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           + ++L++MYA+ G + +A  VF+ M  ++EV++ ++I+     G+ + AL LF  M+K+ 
Sbjct: 367 VASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDN 426

Query: 509 --IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             ++P+ +T + VLSAC H+GLV EG++ FE M   +G+ P++EH++CMVDL  RAGLL 
Sbjct: 427 GTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLY 486

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A ++I KMP  P   +  +LLGACQ  RN  +GE   +  LE    NSG YV+ + +YA
Sbjct: 487 EAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYA 546

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
               WD  AK+R  MR  GV K PGC+W+D G     F   D+ +  +  IY L   L E
Sbjct: 547 NMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAGDSLHNHSMNIYQL---LNE 603

Query: 687 LMKDAGYV 694
            MK  GY+
Sbjct: 604 EMKREGYI 611


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 190/605 (31%), Positives = 309/605 (51%), Gaps = 38/605 (6%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q+H   +  GL+ N  L+ KLV   ++      A  L +         WN +I  Y R+ 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHN 213
            Y + + +Y+ M+   +  D FT+P VLKAC E++D     ++H   I       +FV N
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQN 193

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
            LV++Y K G + VA+ +FD +  R                                   
Sbjct: 194 GLVALYAKCGHIGVAKVVFDGLYHR----------------------------------- 218

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
            +++W +I  G  + G     L + S+MR      D +A V  L A + V  L+ G+ IH
Sbjct: 219 TIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIH 278

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G  ++    +   +  +L   Y++C  +  A   F      ++I WN+M+SGY     AE
Sbjct: 279 GFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAE 338

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LF  M    ++P+ VT+ S +   A+V +L+  +    Y+  ++ +   + +  SL
Sbjct: 339 EAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYV-SKSNYGSDIFVNTSL 397

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MYA+ G V  A+ VFD  S +D V ++++I GYG+ G+G  A+ L+  M +  + P+ 
Sbjct: 398 IDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPND 457

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VT + +L+AC+HSGLV EG + F  M   + I P+ EH++C+VDL GRAG L +A   I 
Sbjct: 458 VTFIGLLTACNHSGLVKEGWELFHCMKD-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIM 516

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
           K+P  P  ++W  LL AC+I+R   +GE+AA KL    P N+G+YV ++N+YA++  WD 
Sbjct: 517 KIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDC 576

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           +A VR  MR+ G+ K  G + ++       F V D S+  A+EI+  L  L   +K+ G+
Sbjct: 577 VAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGF 636

Query: 694 VVKEE 698
           V   E
Sbjct: 637 VPYTE 641



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 177/399 (44%), Gaps = 51/399 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F +++  C ++        +H   I  G   +  +   LV  YA       A  + +  
Sbjct: 156 TFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGL 215

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +IS Y ++G   EAL ++ QM++  ++ D     S+L+A  ++ D++ GR
Sbjct: 216 YHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGR 275

Query: 196 VVHSCIDAC---HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
            +H  +       E +L +  +L + Y K G V VA+  FD+M   + + WN MIS YA 
Sbjct: 276 SIHGFVIKMGLEDEPALLI--SLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAK 333

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G  +EA  LF  M    ++                                    DSV 
Sbjct: 334 NGHAEEAVNLFHYMISRNIKP-----------------------------------DSVT 358

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               + A + VG+L+L + +     +  YG    V  +LI MY++C  +  A  +F   +
Sbjct: 359 VRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNS 418

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +K ++ W++M+ GY       E+  L+  M ++GV PN VT   +L  C     ++ G E
Sbjct: 419 DKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWE 478

Query: 433 -FHCY----ILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
            FHC     I+ R   NEH   ++ +V++  R+G + EA
Sbjct: 479 LFHCMKDFEIVPR---NEH---YSCVVDLLGRAGYLGEA 511



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 3/273 (1%)

Query: 34  HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQG 93
           H   ++    +  +A  G   +A   F+++R      D +  +   I+     V  L QG
Sbjct: 217 HRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWI--ALVSILRAYTDVDDLEQG 274

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           + +H   I +GLE  P L+  L  FYA   L   A    +       + WN +IS Y ++
Sbjct: 275 RSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKN 334

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVH 212
           G   EA+ ++  M SR I+ D+ T  S + A  ++  ++  + +   +   +  S +FV+
Sbjct: 335 GHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVN 394

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
            +L+ MY K G V+ ARR+FD+  ++D V W+ MI  Y   G   EA  L+  M++ GV 
Sbjct: 395 TSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVF 454

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
            N +T+  +   C  +G  K   EL   M+  E
Sbjct: 455 PNDVTFIGLLTACNHSGLVKEGWELFHCMKDFE 487


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 189/613 (30%), Positives = 308/613 (50%), Gaps = 39/613 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  ++ L  GK +H       ++ +  +   L+  Y+     N+A  +      +  + W
Sbjct: 115 CSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLW 174

Query: 144 NLLISLYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
             +I+ Y ++G    AL  + +M    ++  D  T  S   AC ++ D + GR VH  + 
Sbjct: 175 TSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVK 234

Query: 203 A-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               +  L + N+++++YGK G +  A  LF +M  +D +SW++M++ YA          
Sbjct: 235 RRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYA---------- 284

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                 + G E N                    L L + M  +   L+ V  +  L AC+
Sbjct: 285 ------DNGAETNA-------------------LNLFNEMIDKRIELNRVTVISALRACA 319

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
               L+ GK IH  AV   +     V  AL+ MY +C   ++A  LF    +K +++W  
Sbjct: 320 SSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAV 379

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           + SGY  +  A +S  +F  M   G  P+ + +  IL   + +  +Q     H ++  ++
Sbjct: 380 LFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFV-SKS 438

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            F+ +  +  SL+E+YA+   +  A  VF  M R+D VT++S+IA YG  G+G  ALKLF
Sbjct: 439 GFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKLF 498

Query: 502 EEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
            +M N + +KP+ VT V++LSACSH+GL+ EG K F  M + Y + P  EH+  MVDL G
Sbjct: 499 YQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLG 558

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           R G L+KA ++I +MP      +W  LLGAC+IH+N  IGE AA  L    P ++GYY L
Sbjct: 559 RMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTL 618

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           ++N+Y     W   AK+RT +++   +KI G + V+  N    F+  D  + ++ +IY +
Sbjct: 619 LSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKNEVHSFIASDRFHGESDQIYGM 678

Query: 681 LGGLTELMKDAGY 693
           L  L   MK+ GY
Sbjct: 679 LRKLDARMKEEGY 691



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/526 (26%), Positives = 238/526 (45%), Gaps = 50/526 (9%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           CC K+       QLH+  + +GL  +  +V KL   YA ++   +A  L E +  +    
Sbjct: 14  CCSKISI----PQLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYL 69

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRI---RGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           WN L+  Y  +G + E L ++ QM +  I   R DN+T    LK+C  +  ++ G+++H 
Sbjct: 70  WNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHG 129

Query: 200 CIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            +     +  +FV +AL+ +Y K GQ++ A ++F +  ++D V W ++I+ Y   G  + 
Sbjct: 130 FLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPEL 189

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A   F  M                           VLE +S         D V  V    
Sbjct: 190 ALAFFSRMV--------------------------VLEQVSP--------DPVTLVSAAS 215

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           AC+ +    LG+ +HG   R  +     + N+++ +Y +   +R A  LF+    K II+
Sbjct: 216 ACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIIS 275

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W+SM++ Y        +  LF EM    +E N VT+ S L  CA  +NL+ GK  H   +
Sbjct: 276 WSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAV 335

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
               F   + +  +L++MY +      A  +F+ M ++D V++  L +GY   G    +L
Sbjct: 336 NYG-FELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSL 394

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-ACMVD 557
            +F  M     +PD + +V +L+A S  G +V+         S  G F   E   A +++
Sbjct: 395 GVFCNMLSYGTRPDAIALVKILAASSELG-IVQQALCLHAFVSKSG-FDNNEFIGASLIE 452

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           LY +   ++ A ++   M        W++++ A   H   G GE A
Sbjct: 453 LYAKCSSIDNANKVFKGMRRKDV-VTWSSIIAAYGFH---GQGEEA 494



 Score = 45.4 bits (106), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 84/181 (46%), Gaps = 10/181 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +   I+    ++  + Q   LHA     G + N  +   L+  YA  S  +NA  + +  
Sbjct: 411 ALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGM 470

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG 194
             +  + W+ +I+ Y   G   EAL ++ QM +   ++ ++ T+ S+L AC     ++ G
Sbjct: 471 RRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEG 530

Query: 195 -RVVHSCIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMIS 248
            ++ H  ++   E+ L      +  +V + G+ G++D A  + ++M ++     W  ++ 
Sbjct: 531 IKMFHVMVN---EYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLG 587

Query: 249 A 249
           A
Sbjct: 588 A 588


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 181/565 (32%), Positives = 314/565 (55%), Gaps = 46/565 (8%)

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           + R G  A AL V++ +     R D+ T+   L AC  + D+  G  V     DA ++  
Sbjct: 84  HSRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +FV ++L+ +Y ++G +  A ++F +M  RD V+W+TM++ + S G   +A Q++  M+E
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           +GV                    KG               D V  +  + AC+    +++
Sbjct: 203 DGV--------------------KG---------------DEVVMIGVIQACTAARNVRM 227

Query: 329 GKEIHGSAVRGCYGEYENVRNA--LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           G  +HG  +R  +G   +V  A  L+ MY++   L  A  +F +   ++ ++W++M+SG+
Sbjct: 228 GASVHGHLLR--HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                ++E+  LFR M  SG++P+   + S L  C+ +  L+ G+  H +I+RR  FN  
Sbjct: 286 AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFN-- 343

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
            +L  + ++MY++ G +  A+ +F+++S RD + + ++IA  G  G G+ AL LF+EMN+
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             ++PDH T  ++LSA SHSGLV EG+  F RM + + I P  +H+ C+VDL  R+GL+ 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A +++T M   PT A+W  LL  C  ++   +GE  A+ +LE +P++ G   L++N+YA
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           AT  WDK+ +VR  M+D G +K+PGC+ ++       F+++D S+ Q +EI   +  L  
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDL 583

Query: 687 LMKDAGYVVKEEFCS---EEEIVEE 708
            M+  GY+ + EF     EEE+ E+
Sbjct: 584 EMRKMGYIPRTEFVYHDLEEEVKEQ 608



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 220/480 (45%), Gaps = 55/480 (11%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           RG+ + A   F R    AA  D    +F   +  C ++  L  G+ +   A   G + + 
Sbjct: 87  RGSPASALRVF-RALPPAARPDST--TFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            +   L+  YA +    +A  +      R  + W+ +++ +V  G   +A+ +Y++M+  
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
            ++GD      V++AC    +V  G  VH   +       +    +LV MY K G +DVA
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            R+F  M+ R+ VSW+ MIS +A  G   EA +LF  MQ  G++                
Sbjct: 264 CRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQP--------------- 308

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR----GCYGEY 344
                               DS A V  L ACS++G LKLG+ +HG  VR     C    
Sbjct: 309 --------------------DSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCI--- 345

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             +  A I MYS+C  L  A +LF M +++ +I WN+M++        +++  LF+EM  
Sbjct: 346 --LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +G+ P++ T AS+L   +    ++ GK +   ++           +  LV++ ARSG V 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 465 EAKSVFDLMSRRDEVT-YTSLIAGYGIQGEGRVALKLFEEMNKN--QIKPDHVTMVAVLS 521
           EA  +   M     V  + +L++G     +    L+L E +  N  +++PD V ++A++S
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKK----LELGESIADNILELQPDDVGVLALVS 519



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 2/253 (0%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R+     +  F   G    A + + R+R      D V+     +I  C   + +  G  +
Sbjct: 174 RVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVV--MIGVIQACTAARNVRMGASV 231

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H   +  G+  + V    LV  YA   L + AC +      R  + W+ +IS + ++G  
Sbjct: 232 HGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQS 291

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALV 216
            EAL +++ MQ+  I+ D+    S L AC  +  +  GR VH  I    +++  +  A +
Sbjct: 292 DEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAI 351

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K G +  A+ LF+ + +RD + WN MI+   + G  ++A  LF EM E G+  +  
Sbjct: 352 DMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHA 411

Query: 277 TWNTIAGGCLRTG 289
           T+ ++      +G
Sbjct: 412 TFASLLSALSHSG 424


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 181/565 (32%), Positives = 314/565 (55%), Gaps = 46/565 (8%)

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           + R G  A AL V++ +     R D+ T+   L AC  + D+  G  V     DA ++  
Sbjct: 84  HSRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +FV ++L+ +Y ++G +  A ++F +M  RD V+W+TM++ + S G   +A Q++  M+E
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           +GV                    KG               D V  +  + AC+    +++
Sbjct: 203 DGV--------------------KG---------------DEVVMIGVIQACTAARNVRM 227

Query: 329 GKEIHGSAVRGCYGEYENVRNA--LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           G  +HG  +R  +G   +V  A  L+ MY++   L  A  +F +   ++ ++W++M+SG+
Sbjct: 228 GASVHGHLLR--HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                ++E+  LFR M  SG++P+   + S L  C+ +  L+ G+  H +I+RR  FN  
Sbjct: 286 AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFN-- 343

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
            +L  + ++MY++ G +  A+ +F+++S RD + + ++IA  G  G G+ AL LF+EMN+
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             ++PDH T  ++LSA SHSGLV EG+  F RM + + I P  +H+ C+VDL  R+GL+ 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A +++T M   PT A+W  LL  C  ++   +GE  A+ +LE +P++ G   L++N+YA
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           AT  WDK+ +VR  M+D G +K+PGC+ ++       F+++D S+ Q +EI   +  L  
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDL 583

Query: 687 LMKDAGYVVKEEFCS---EEEIVEE 708
            M+  GY+ + EF     EEE+ E+
Sbjct: 584 EMRKMGYIPRTEFVYHDLEEEVKEQ 608



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 219/480 (45%), Gaps = 55/480 (11%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109
           RG+ + A   F R    AA  D    +F   +  C ++  L  G+ +   A   G + + 
Sbjct: 87  RGSPASALRVF-RALPPAARPDST--TFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
            +   L+  YA +    +A  +      R  + W+ +++ +V  G   +A+ +Y++M+  
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
            ++GD      V++AC    +V  G  VH   +       +    +LV MY K G +DVA
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
            R+F  M+ R+ VSW+ MIS +A  G   EA +LF  MQ  G++                
Sbjct: 264 CRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQP--------------- 308

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR----GCYGEY 344
                               DS A V  L ACS++G LKLG+ +HG  VR     C    
Sbjct: 309 --------------------DSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCI--- 345

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             +  A I MYS+C  L  A +LF M +++ +I WN+M++        +++  LF+EM  
Sbjct: 346 --LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +G+ P++ T AS+L   +    ++ GK +   ++           +  LV++ ARSG V 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 465 EAKSVFDLMSRRDEVT-YTSLIAGYGIQGEGRVALKLFEEMNKN--QIKPDHVTMVAVLS 521
           EA  +   M     V  + +L++G          L+L E +  N  +++PD V ++A++S
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGC----LNNKKLELGESIADNILELQPDDVGVLALVS 519



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 2/253 (0%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R+     +  F   G    A + + R+R      D V+     +I  C   + +  G  +
Sbjct: 174 RVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVV--MIGVIQACTAARNVRMGASV 231

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H   +  G+  + V    LV  YA   L + AC +      R  + W+ +IS + ++G  
Sbjct: 232 HGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQS 291

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALV 216
            EAL +++ MQ+  I+ D+    S L AC  +  +  GR VH  I    +++  +  A +
Sbjct: 292 DEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAI 351

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K G +  A+ LF+ + +RD + WN MI+   + G  ++A  LF EM E G+  +  
Sbjct: 352 DMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHA 411

Query: 277 TWNTIAGGCLRTG 289
           T+ ++      +G
Sbjct: 412 TFASLLSALSHSG 424


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 206/646 (31%), Positives = 332/646 (51%), Gaps = 50/646 (7%)

Query: 63   IRITAASHDVVLDSFAHI-IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYA 120
            + I + S+ V+L +F+   +   G+ K    G+++HA  I  GL  N V +   LV  YA
Sbjct: 851  VGINSDSYVVLLSAFSEFSVLEEGRRK----GREVHAHVIRTGLNDNKVAIGNGLVNMYA 906

Query: 121  SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
                  +AC + E    +  + WN LIS   ++    +A   + +M+       NFT  S
Sbjct: 907  KSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLIS 966

Query: 181  VLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD 239
             L +C  +  +  G  +H   +    +  + V NAL+++Y + G      ++F  M E D
Sbjct: 967  TLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYD 1026

Query: 240  AVSWNTMISAYA-SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
             VSWN++I A + S+    +A + F+EM   G  ++ +T+  I                 
Sbjct: 1027 QVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINI----------------- 1069

Query: 299  SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
                              L A S +   ++  +IH   ++ C  +   + NAL++ Y +C
Sbjct: 1070 ------------------LSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC 1111

Query: 359  KDLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
             ++     +F +M+  +  ++WNSM+SGY H +   ++  L   M + G   +  T A++
Sbjct: 1112 GEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATV 1171

Query: 418  LPLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
            L  CA VA L+ G E H C I  RA     +++ ++LV+MY++ G++  A   F+LM  R
Sbjct: 1172 LSACASVATLERGMEVHACGI--RACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLR 1229

Query: 477  DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT-MVAVLSACSHSGLVVEGQKQ 535
            +  ++ S+I+GY   G G  ALKLF  M  +   PDHV  ++ VLSACSH G V EG + 
Sbjct: 1230 NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEH 1289

Query: 536  FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC--QI 593
            F+ M+ +Y + P++EHF+CMVDL GRAG L++  + I  MP  P   +W T+LGAC    
Sbjct: 1290 FKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRAN 1349

Query: 594  HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
             RNT +G  AAE LLE  P+N+  YVL+ANMYA+   W+ +AK R  M++  V+K  GC+
Sbjct: 1350 GRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCS 1409

Query: 654  WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            WV   +    F+  D  + +   IY  L  L   M+DAGY+ + ++
Sbjct: 1410 WVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKY 1455



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 198/447 (44%), Gaps = 47/447 (10%)

Query: 56   AFEAFTRIRITAA--SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
            A E+F R+R T +  S+  ++ + +     C  +  +  G+Q+H   + LGL+ +  +  
Sbjct: 945  AAESFLRMRRTGSMPSNFTLISTLS----SCASLGWIMLGEQIHCDGLKLGLDTDVSVSN 1000

Query: 114  KLVTFYASFSLYNNACFLVENSNIRYP-LPWNLLI-SLYVRDGFYAEALCVYKQMQSRRI 171
             L+  YA    +   C  V +    Y  + WN +I +L   +   ++A+  + +M     
Sbjct: 1001 ALLALYAETGCFTE-CLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGW 1059

Query: 172  RGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARR 230
                 T+ ++L A   +   +    +H+ +   C      + NAL+S YGK G+++   +
Sbjct: 1060 GLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEK 1119

Query: 231  LFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +F +M E RD VSWN+MIS Y    L  +A  L   M ++G  ++  T+ T+        
Sbjct: 1120 IFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATV-------- 1171

Query: 290  NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                                       L AC+ V  L+ G E+H   +R C      V +
Sbjct: 1172 ---------------------------LSACASVATLERGMEVHACGIRACMESDVVVGS 1204

Query: 350  ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
            AL+ MYS+C  + +A   F++   +++ +WNSM+SGY      E++  LF  M   G  P
Sbjct: 1205 ALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPP 1264

Query: 410  NYVT-IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            ++V  +  +L  C+ V  ++ G E    +      +  +  ++ +V++  R+GK+ E   
Sbjct: 1265 DHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGD 1324

Query: 469  VFDLMSRRDEVTYTSLIAGYGIQGEGR 495
              + M  +  V     + G   +  GR
Sbjct: 1325 FINSMPMKPNVLIWRTVLGACCRANGR 1351



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 124/527 (23%), Positives = 224/527 (42%), Gaps = 67/527 (12%)

Query: 83   CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
            CC +     + ++LH  +I  G   N  L   L+  Y       +A  L +  + R  + 
Sbjct: 558  CCSE-----EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVT 612

Query: 143  WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM--MDVDFGRVVHSC 200
            W  LIS Y ++G   EA   ++ M       +++ + S L+AC E        G  +H  
Sbjct: 613  WACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGL 672

Query: 201  IDACHEWS-LFVHNALVSMYGK-FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I      S + V N L+SMYG      + AR +FD++  R                    
Sbjct: 673  ISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIR-------------------- 712

Query: 259  AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ---------ETYLD 309
                           N I+WN+I     R G+     +L S M+ +         E    
Sbjct: 713  ---------------NSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFG 757

Query: 310  SVATVIGLGACSHVG-ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
            S+ T     ACS V   L + +++     +  + +   V +AL++ ++R      A  +F
Sbjct: 758  SLIT----AACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIF 813

Query: 369  KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
            +    +++++ N ++ G       E +A +F EM +  V  N  +   +L   +  + L+
Sbjct: 814  EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVLE 872

Query: 429  HGK----EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
             G+    E H +++R  + +  + + N LV MYA+SG + +A SVF+LM  +D V++ SL
Sbjct: 873  EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSL 932

Query: 485  IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
            I+G         A + F  M +    P + T+++ LS+C+  G ++ G+ Q        G
Sbjct: 933  ISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGE-QIHCDGLKLG 991

Query: 545  IFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGA 590
            +   +     ++ LY   G   +  ++ + MP Y   S  W +++GA
Sbjct: 992  LDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVS--WNSVIGA 1036



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 133/588 (22%), Positives = 255/588 (43%), Gaps = 66/588 (11%)

Query: 47   FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH---IIFCCGKVK-ALAQGKQLHACAIA 102
            ++ RG+   A++ F+ ++          + +     I   C  V   L   +Q+ A    
Sbjct: 724  YSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEK 783

Query: 103  LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
             G  ++  +   LV+ +A F L ++A  + E   +R  +  N L+   V+      A  V
Sbjct: 784  SGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKV 843

Query: 163  YKQMQSRRIRGDNFTYPSVLKACGEMMDVD----FGRVVHSCI--DACHEWSLFVHNALV 216
            + +M+   +  ++ +Y  +L A  E   ++     GR VH+ +     ++  + + N LV
Sbjct: 844  FHEMKDL-VGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLV 902

Query: 217  SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            +MY K G +  A  +F+ M+E+D+VSWN++IS        ++A + F+ M+         
Sbjct: 903  NMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMR--------- 953

Query: 277  TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
                      RTG+      L+S                 L +C+ +G + LG++IH   
Sbjct: 954  ----------RTGSMPSNFTLIST----------------LSSCASLGWIMLGEQIHCDG 987

Query: 337  VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
            ++       +V NAL+ +Y+          +F +  E   ++WNS++   +  + +   A
Sbjct: 988  LKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQA 1047

Query: 397  F-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
               F EM R G   + VT  +IL   + ++  +   + H  +L+  + ++   + N+L+ 
Sbjct: 1048 VKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCL-SDDTAIGNALLS 1106

Query: 456  MYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
             Y + G++ E + +F  MS  RDEV++ S+I+GY        A+ L   M +   + D  
Sbjct: 1107 CYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSF 1166

Query: 515  TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF----ACMVDLYGRAGLLNKAKE 570
            T   VLSAC+    +  G +         GI   +E      + +VD+Y + G ++ A  
Sbjct: 1167 TFATVLSACASVATLERGME-----VHACGIRACMESDVVVGSALVDMYSKCGRIDYASR 1221

Query: 571  IITKMPYTPTSAMWATLLGACQIHRNTGIGEWA----AEKLLETRPEN 614
                MP     + W +++     H   G GE A       +L+ +P +
Sbjct: 1222 FFELMPLRNVYS-WNSMISGYARH---GHGEKALKLFTRMMLDGQPPD 1265



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 183/419 (43%), Gaps = 50/419 (11%)

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           +LF+ N L+++Y + G +  A++LFD+M  R+ V+W  +IS Y   G   EA   F +M 
Sbjct: 578 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 637

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
             G   N   + +    C                  QE+         G   C      K
Sbjct: 638 RAGFIPNHYAFGSALRAC------------------QES---------GPSGC------K 664

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKD-LRHAYILFKMTAEKSIITWNSMLSGY 386
           LG +IHG   +  YG    V N LI+MY  C D    A  +F     ++ I+WNS++S Y
Sbjct: 665 LGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVY 724

Query: 387 THLDCAEESAFLFREMFRSGV----EPNYVTIASIL-PLCARVANLQHGKEFHCYILRRA 441
           +       +  LF  M + G+    +PN  T  S++   C+ V       E     + ++
Sbjct: 725 SRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKS 784

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            F + L + ++LV  +AR G   +AK++F+ M  R+ V+   L+ G   Q +G  A K+F
Sbjct: 785 GFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVF 844

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC-----MV 556
            EM K+ +  +  + V +LSA S   ++ EG+++  R    + I   L          +V
Sbjct: 845 HEM-KDLVGINSDSYVVLLSAFSEFSVLEEGRRK-GREVHAHVIRTGLNDNKVAIGNGLV 902

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           ++Y ++G +  A  +   M     S  W +L+            E AAE  L  R   S
Sbjct: 903 NMYAKSGAIADACSVFELM-VEKDSVSWNSLISGLD---QNECSEDAAESFLRMRRTGS 957



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 146/311 (46%), Gaps = 20/311 (6%)

Query: 329 GKEIHGSAVRGCYGEYENV--RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            +E+H  +++  YG   N+   N LI +Y R  DL  A  LF   + ++++TW  ++SGY
Sbjct: 563 ARELHLQSIK--YGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 620

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV--ANLQHGKEFHCYILRRAMFN 444
           T     +E+   FR+M R+G  PN+    S L  C     +  + G + H  ++ +  + 
Sbjct: 621 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHG-LISKTRYG 679

Query: 445 EHLLLWNSLVEMYARS-GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
             +++ N L+ MY        +A+SVFD +  R+ +++ S+I+ Y  +G+   A  LF  
Sbjct: 680 SDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSS 739

Query: 504 MNKN----QIKPDHVTMVAVLS-ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           M K       KP+  T  ++++ ACS     +   +Q        G    L   + +V  
Sbjct: 740 MQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSG 799

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE---NS 615
           + R GL + AK I  +M      +M   ++G  +  +    GE AA+   E +     NS
Sbjct: 800 FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQ----GEAAAKVFHEMKDLVGINS 855

Query: 616 GYYVLIANMYA 626
             YV++ + ++
Sbjct: 856 DSYVVLLSAFS 866


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 185/620 (29%), Positives = 319/620 (51%), Gaps = 40/620 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  I+  C  +      +QLHA  +      + +    L++ Y  FS   +A  +    
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI 260

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFG 194
            I+  + W  +I+ + + G+  EALC +++M S+ +   N F + S   AC ++++ D G
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCG 320

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H  CI       LF   +L  MY K G ++ AR +F  + + D              
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPD-------------- 366

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                                ++ WN I  G     N K      S+MR      + V  
Sbjct: 367 ---------------------LVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTV 405

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           +  L ACS    L  G ++H   V+  +     V N+L++MYS+C +L  A  +F+    
Sbjct: 406 LSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGN 465

Query: 374 KS-IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           K+ I++WN++L+     + A E   L + MF S ++P++VT+ ++L    ++A+ + G +
Sbjct: 466 KADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQ 525

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HC+I++  + N  + + N+L+ MY + G +  A+ +FD +   D ++++SLI GY   G
Sbjct: 526 IHCFIMKSGL-NLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAG 584

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G+ A +LF  M    +KP+ +T V +L+ACSH G+V EG K +  M   Y I P  EH 
Sbjct: 585 CGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHC 644

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +CMVDL  RAG L+ A++ I +MP+ P   +W TLL AC++H N  +G+ AAE +L+  P
Sbjct: 645 SCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDP 704

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            NS   V++ N++A++G W   A++R+ MR + V K+PG +W++  +    FL +D  + 
Sbjct: 705 SNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHP 764

Query: 673 QAQEIYPLLGGLT-ELMKDA 691
           +  +IY +L  L  +++ D+
Sbjct: 765 ERGKIYTMLEELMLQILDDS 784



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/539 (24%), Positives = 254/539 (47%), Gaps = 49/539 (9%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KAF+ F +     +S  +   ++ H+I  C  +++L  G+++H   +    + + +L   
Sbjct: 83  KAFDIFQK----CSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNH 138

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           +++ Y        A  + ++  ++  + W  +IS Y R G    A+ +Y QM       D
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
           +FT+ S++K+C  + D    R +H+  + +     L   NAL+SMY KF Q+  A  +F 
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV-EVNVITWNTIAGGCLRTGNFK 292
           +++ +D +SW +MI+ ++  G   EA   F EM  + V + N   + +            
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGS------------ 306

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                                     ACS +     G++IHG  ++   G       +L 
Sbjct: 307 -----------------------AFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLC 343

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MY++C  L  A  +F    +  ++ WN++++G+  +  A+ES+  F +M  +G+ PN V
Sbjct: 344 DMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDV 403

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-D 471
           T+ S+L  C+    L HG + H YI++   FN  + + NSL+ MY++   + +A  VF D
Sbjct: 404 TVLSLLCACSEPVMLNHGIQVHSYIVKMG-FNLDIPVCNSLLSMYSKCSNLNDALQVFED 462

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV- 530
           + ++ D V++ +L+     Q +    L+L + M  ++IKPDHVT+  VL +   SG +  
Sbjct: 463 IGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVS---SGQIAS 519

Query: 531 -EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            E   Q        G+   +     ++++Y + G L  A+++   +   P    W++L+
Sbjct: 520 YEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG-NPDIISWSSLI 577



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 205/443 (46%), Gaps = 41/443 (9%)

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALV 216
           +A  ++++  S  ++  + TY  ++ AC  +  ++ GR +H  +  C ++  + + N ++
Sbjct: 83  KAFDIFQKCSSSPLK--SVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHIL 140

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
           SMYGK G +  AR +FD M  ++ VSW +MIS Y+  G    A  L+V+M   G   +  
Sbjct: 141 SMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           T+ +I                                   + +CS +   KL +++H   
Sbjct: 201 TFGSI-----------------------------------VKSCSGLDDFKLARQLHAHV 225

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  +G     +NALI+MY++   +  A  +F     K +I+W SM++G++ L    E+ 
Sbjct: 226 LKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEAL 285

Query: 397 FLFREMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             FREM    V +PN     S    C+++     G++ H   ++  + ++ L    SL +
Sbjct: 286 CHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSD-LFAGCSLCD 344

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+ G +  A++VF  + + D V + ++IAG+      + +   F +M    + P+ VT
Sbjct: 345 MYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVT 404

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           ++++L ACS   ++  G +    +  + G    +     ++ +Y +   LN A ++   +
Sbjct: 405 VLSLLCACSEPVMLNHGIQVHSYIVKM-GFNLDIPVCNSLLSMYSKCSNLNDALQVFEDI 463

Query: 576 PYTPTSAMWATLLGACQIHRNTG 598
                   W TLL AC      G
Sbjct: 464 GNKADIVSWNTLLTACLQQNQAG 486


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 192/622 (30%), Positives = 312/622 (50%), Gaps = 37/622 (5%)

Query: 72   VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
            +V  SF      C   + L  G+Q+H   I +  + +P +   L+T YA      +A  +
Sbjct: 647  LVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKV 706

Query: 132  VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
             +    +     N +IS ++ +G   +AL +Y +M++     D+FT  S+L  C  +   
Sbjct: 707  FDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSY 766

Query: 192  DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
            DFGR VH+  I    + ++ + +AL++MY K G  + A  +F  M ERD           
Sbjct: 767  DFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERD----------- 815

Query: 251  ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                                    V+ W ++  G  +   FK  L+L   M  +    DS
Sbjct: 816  ------------------------VVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADS 851

Query: 311  VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                  + A   +  ++LG  IHG A++        V  +L+ MYS+      A ++F  
Sbjct: 852  DVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSS 911

Query: 371  TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
               K+++ WNSM+S Y+     E S  L  ++ + G   + V+I ++L   + VA L  G
Sbjct: 912  MPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKG 971

Query: 431  KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
            K  H Y +R  + ++ L + N+L++MY + G +  A+ +F+ M RR+ VT+ S+IAGYG 
Sbjct: 972  KTLHAYQIRLQIPSD-LQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGS 1030

Query: 491  QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
             G    A++LF+EM +++  PD VT +A++++CSHSG+V EG   F+ M   YG+ P++E
Sbjct: 1031 HGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRME 1090

Query: 551  HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
            H+A +VDL GRAG L+ A   I  MP     ++W  LL AC+ HRN  +GE  A+ LL+ 
Sbjct: 1091 HYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKM 1150

Query: 611  RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
             P     YV + N+Y     WD+ A +R  M+  G++K PGC+W++  N    F   D+S
Sbjct: 1151 EPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSS 1210

Query: 671  NVQAQEIYPLLGGLTELMKDAG 692
            + +  EIY  L  L   M+  G
Sbjct: 1211 STRRIEIYKTLSSLKSNMEGKG 1232



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/553 (25%), Positives = 249/553 (45%), Gaps = 52/553 (9%)

Query: 34  HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQG 93
            +M +  +E +K    +G  S+A E  ++   +A +      +F  ++  C  +  L  G
Sbjct: 403 ELMNLPQVEEIKALVQQGKYSQALELHSKTPHSALT--TAKFTFPSLLKTCASLSNLYHG 460

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYPLP----WNLLIS 148
           + +HA  + +GL+ +P +   L+  Y    L  +A  + +  S  R   P    WN +I 
Sbjct: 461 RTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVID 520

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS 208
            Y + G + E L  + +MQ   IR D ++   VL  C  +     GR +H  I       
Sbjct: 521 GYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYI------- 573

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
                                     M E D      +I  Y+S     EA+ LF +++ 
Sbjct: 574 -----------------------IRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLEN 610

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                N++ WN + GG +  G ++  LEL S  + +   L S +      ACSH   L  
Sbjct: 611 RS---NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDF 667

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+++H   ++  + +   V  +L+TMY++   +  A  +F    +K +   N+M+S +  
Sbjct: 668 GRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIG 727

Query: 389 LDCAEESAFLFREMFRSGVEP-NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
              A ++  L+ +M ++G  P +  TI+S+L  C+ V +   G+  H  +++R+M   ++
Sbjct: 728 NGRAYDALGLYNKM-KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSM-QSNV 785

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + ++L+ MY + G   +A SVF  M  RD V + S+IAG+      + AL LF  M K 
Sbjct: 786 AIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKE 845

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH---FAC-MVDLYGRAG 563
            +K D   M +V+SA    GL +E   +   +   + I   LE     AC +VD+Y + G
Sbjct: 846 GVKADSDVMTSVISA----GLGLE-NVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFG 900

Query: 564 LLNKAKEIITKMP 576
               A+ + + MP
Sbjct: 901 FAESAEMVFSSMP 913



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 5/179 (2%)

Query: 70   HDVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127
            H   LDS +   ++     V AL +GK LHA  I L +  +  +   L+  Y        
Sbjct: 946  HGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKY 1005

Query: 128  ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
            A  + EN   R  + WN +I+ Y   G   EA+ ++K+M+      D  T+ +++ +C  
Sbjct: 1006 AQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSH 1065

Query: 188  MMDVDFGRVVHSC--IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSW 243
               V+ G  +     I+   E  +  + ++V + G+ G++D A      M ++ D   W
Sbjct: 1066 SGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVW 1124


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 206/631 (32%), Positives = 318/631 (50%), Gaps = 54/631 (8%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           A A  + LHA A+A G   +  +   L   Y + S  N+A  + +       + WN L++
Sbjct: 138 ASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLA 197

Query: 149 LYVRDGFY-AEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-- 204
                G   +EAL  + +M  +  +R D+ T  SVL A  E+ +   GR VH+  + C  
Sbjct: 198 -----GLSGSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGL 252

Query: 205 --HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
             HE    V   L+S+Y K G ++ AR LFD+M   D V++N +IS Y+  G+   + +L
Sbjct: 253 AQHE---HVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVEL 309

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F E+   G                              +R   + L ++  V      S 
Sbjct: 310 FKELVGMG------------------------------LRPSSSTLVALIPV-----HSP 334

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            G   L   +H   V+        V  AL T+Y R  D+  A   F    EK++ +WN+M
Sbjct: 335 FGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAM 394

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SGY      E +  LF++M    V PN +TI+S L  CA++  L  GK  H  I+    
Sbjct: 395 ISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVH-KIIANEK 453

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
              ++ +  +L++MY + G + EA+ +FD M  ++ V++  +I+GYG+ G+G  ALKL++
Sbjct: 454 LELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYK 513

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M    + P   T ++VL ACSH GLV EG   F  MTS YGI P +EH  CMVDL GRA
Sbjct: 514 DMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRA 573

Query: 563 GLLNKAKEIITKMPYTPTS-AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           G L +A E+I++ P +     +W  LLGAC +H++  + + A++KL E  PEN+GYYVL+
Sbjct: 574 GQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLL 633

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+Y +   + + A VR   +   + K PGC  ++ G+    F+  D ++ Q+  IY  L
Sbjct: 634 SNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYL 693

Query: 682 GGLTELMKDAGYVVKEE---FCSEEEIVEEI 709
             LT  M +AGY    E   +  EEE  E +
Sbjct: 694 EKLTAKMIEAGYRPDTEAALYDVEEEEKEHM 724



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 182/424 (42%), Gaps = 44/424 (10%)

Query: 54  SKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           S+A EAF R+   A +  V  DS   A ++    +V     G+ +HA     GL ++  +
Sbjct: 202 SEALEAFVRM---AGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHV 258

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
           V  L++ YA       A  L +       + +N LIS Y  +G    ++ ++K++    +
Sbjct: 259 VTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGL 318

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
           R  + T  +++              +H+  + A  + +  V  AL ++Y +F  +D ARR
Sbjct: 319 RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARR 378

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
            FD M E+   SWN MIS YA  GL + A  LF +MQ   V  N +T ++          
Sbjct: 379 AFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISS---------- 428

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                                     L AC+ +GAL LGK +H             V  A
Sbjct: 429 -------------------------ALSACAQLGALSLGKWVHKIIANEKLELNVYVMTA 463

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI MY +C  +  A  +F     K++++WN M+SGY       E+  L+++M  + + P 
Sbjct: 464 LIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPT 523

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             T  S+L  C+    ++ G      +         +     +V++  R+G++ EA   F
Sbjct: 524 SSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEA---F 580

Query: 471 DLMS 474
           +L+S
Sbjct: 581 ELIS 584



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 9/204 (4%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C ++ AL+ GK +H       LE N  ++  L+  Y        A  + ++ + +  + W
Sbjct: 433 CAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSW 492

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N++IS Y   G  AEAL +YK M    +   + T+ SVL AC     V  G  V   + +
Sbjct: 493 NVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTS 552

Query: 204 CHEWSLFVHN--ALVSMYGKFGQVDVARRLFDKMLERDAVS---WNTMISA---YASKGL 255
            +  +  + +   +V + G+ GQ+  A  L  +   + AV    W  ++ A   +    L
Sbjct: 553 DYGITPGIEHCTCMVDLLGRAGQLKEAFELISE-FPKSAVGPGIWGALLGACMVHKDGDL 611

Query: 256 WKEAFQLFVEMQEEGVEVNVITWN 279
            K A Q   E++ E     V+  N
Sbjct: 612 AKLASQKLFELEPENTGYYVLLSN 635


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 169/534 (31%), Positives = 283/534 (52%), Gaps = 48/534 (8%)

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222
           Y+QM+   +     T+P +LKA  ++ D +  +     +    +  LFV N+L+S Y   
Sbjct: 92  YRQMRRNGVVPSRHTFPPLLKAVFKLRDANPFQFHAHILKFGFDSDLFVRNSLISGYSNC 151

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G  +   R+FD   ++D VSW  MI  +       EA   FVEM+  GV  N +T     
Sbjct: 152 GLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMT----- 206

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                      V+ +L   R  E                    ++ G+ IHG      Y 
Sbjct: 207 -----------VVSVLKATRKAED-------------------VRFGRSIHG-----FYL 231

Query: 343 EYENVR------NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           E   VR      ++L+ MY +C     A  +F     ++++TW ++++GY    C E+  
Sbjct: 232 EAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGM 291

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
           F+F EM +S V PN  T++S+L  CA V  L  G+  HCY+++ ++   +  +  +L++ 
Sbjct: 292 FVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSI-EINTTVGTTLIDF 350

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G + EA  VF+ +  ++  T+T++I G+   G    A+ LF  M  + + P+ VT 
Sbjct: 351 YAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTF 410

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           + VLSAC+H GLV EG++ F  M   + + P+ +H+ACMVDL+GR GLL +AK +I +MP
Sbjct: 411 IVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMP 470

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             PT+A+W  L G+C IH++  +G++AA ++++ +P +SG Y L+AN+Y+ +  WD +A+
Sbjct: 471 MEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVAR 530

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLV-DDTSNVQAQEIYPLLGGLTELMK 689
           VR  M+D  V K PGC+W++       F+  DD   +++ ++Y  L  +   M+
Sbjct: 531 VRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKKPLESDDLYKTLDNVGVQMR 584



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 200/434 (46%), Gaps = 48/434 (11%)

Query: 47  FAGRGNLSK--AFEAFTRIR---ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           F+GR  L++  +F ++ ++R   +  + H     +F  ++    K++  A   Q HA  +
Sbjct: 77  FSGRVTLNRRLSFLSYRQMRRNGVVPSRH-----TFPPLLKAVFKLRD-ANPFQFHAHIL 130

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
             G + +  +   L++ Y++  L+     + + +  +  + W  +I  +VR+    EA+ 
Sbjct: 131 KFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMT 190

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACH-EWSLFVHNALVSMY 219
            + +M+   +  +  T  SVLKA  +  DV FGR +H   ++A      +F+ ++LV MY
Sbjct: 191 YFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMY 250

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
           GK G  D A+++FD+M  R+ V+W  +I+ Y     +++   +F EM +  V  N  T +
Sbjct: 251 GKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLS 310

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           ++                                   L AC+HVGAL  G+ +H   ++ 
Sbjct: 311 SV-----------------------------------LSACAHVGALHRGRRVHCYVIKN 335

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                  V   LI  Y++C  L  A ++F+   EK++ TW +M++G+     A  +  LF
Sbjct: 336 SIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLF 395

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
             M  S V PN VT   +L  CA    ++ G+     +  R         +  +V+++ R
Sbjct: 396 HTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGR 455

Query: 460 SGKVPEAKSVFDLM 473
            G + EAK++ + M
Sbjct: 456 KGLLEEAKALIERM 469



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 126/274 (45%), Gaps = 26/274 (9%)

Query: 351 LITMYSRCK---DLRHAYILFKMTAEKSIITWNSMLSGYT-HLDCAEESAFL-FREMFRS 405
           L  +  RC      R+A  L       SI  W+S++  ++  +      +FL +R+M R+
Sbjct: 39  LSRLLRRCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRN 98

Query: 406 GVEPNYVTIASILPLCARVANLQHGK--EFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           GV P+  T     PL   V  L+     +FH +IL+   F+  L + NSL+  Y+  G  
Sbjct: 99  GVVPSRHTFP---PLLKAVFKLRDANPFQFHAHILKFG-FDSDLFVRNSLISGYSNCGLF 154

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
                VFD    +D V++T++I G+        A+  F EM ++ +  + +T+V+VL A 
Sbjct: 155 EFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKAT 214

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFAC-------MVDLYGRAGLLNKAKEIITKMP 576
             +  V  G+       SI+G + +     C       +VD+YG+ G  + A+++  +MP
Sbjct: 215 RKAEDVRFGR-------SIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMP 267

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
            +     W  L+      R    G +  E++L++
Sbjct: 268 -SRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKS 300


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  316 bits (809), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 193/664 (29%), Positives = 327/664 (49%), Gaps = 48/664 (7%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   +  E F  +R      D    +FA  +  C        G ++ + A+  G+EKN  
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFA--LKACASSLDYEMGMEIISSAVEKGMEKNRF 166

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   +++F   F     A  + +    +  + WN +I  YV+ G +  A  ++ +M    
Sbjct: 167 VGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVAR 229
           I+    T  S+++ACG + ++  G+ +H  +      + + V  + V MY K G ++ AR
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESAR 286

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +F KM  R                                   N+++WN +  GC+R G
Sbjct: 287 WVFYKMPTR-----------------------------------NLVSWNAMISGCVRNG 311

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN--- 346
                 +L  R+       D    V  L  CS   +L  GK +HG A+R     +E+   
Sbjct: 312 LVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR----SFESNLI 367

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           +  A++ +YS+C  L+ A  +F    ++++ITW +ML G      AE++  LF +M   G
Sbjct: 368 LSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEG 427

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           +  N VT  S++  CA + +L+ G+  H ++ R   F   ++   +LV+MYA+ GK+  A
Sbjct: 428 IAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLG-FAFDIVNMTALVDMYAKCGKINLA 486

Query: 467 KSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           + +F   S  +D V + S+I GYG+ G G  A+ ++ +M +  +KP+  T +++LSACSH
Sbjct: 487 ERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSH 546

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           S LV +G   F  M   + I P  +H+AC+VDL  RAG   +A+ +I KMP+ P +A+  
Sbjct: 547 SRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLE 606

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LL  C+ H+N  +G   ++KLL     N G Y++++N+YA    WDK+  +R  MR+ G
Sbjct: 607 ALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRG 666

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEI 705
           ++K PG + V+ GN    F   D S+   +EIY  L  L   ++ +GY V +  C   ++
Sbjct: 667 LKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGY-VPDTSCVLRDV 725

Query: 706 VEEI 709
            EE+
Sbjct: 726 DEEM 729



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 145/565 (25%), Positives = 265/565 (46%), Gaps = 41/565 (7%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           K L   K  HA  I   L  +  +  KLV  Y+       A ++ +       L  N ++
Sbjct: 43  KNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAML 102

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHE 206
             Y++ G Y E L ++  M+SR +  D+ +    LKAC   +D + G  ++ S ++   E
Sbjct: 103 CGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGME 162

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
            + FV ++++S   KFG++  A+R+FD M  +D V WN++I  Y   G +  AFQLF EM
Sbjct: 163 KNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEM 222

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
              G++ + IT  ++                                   + AC  +G L
Sbjct: 223 HGSGIKPSPITMTSL-----------------------------------IQACGGIGNL 247

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           KLGK +HG  +    G    V  + + MYS+  D+  A  +F     +++++WN+M+SG 
Sbjct: 248 KLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGC 307

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                  ES  LF  + RS    +  TI S+L  C++ A+L  GK  H   +R   F  +
Sbjct: 308 VRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS--FESN 365

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           L+L  ++V++Y++ G + +A  VF+ M  R+ +T+T+++ G    G    AL+LF +M +
Sbjct: 366 LILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQE 425

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             I  + VT V+++ +C+H G +  G+     +  + G    + +   +VD+Y + G +N
Sbjct: 426 EGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRL-GFAFDIVNMTALVDMYAKCGKIN 484

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET--RPENSGYYVLIANM 624
            A+ I +    +    +W +++    +H +         K++E   +P  + +  L++  
Sbjct: 485 LAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSAC 544

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKI 649
             +      ++   +  RD  +R I
Sbjct: 545 SHSRLVEQGISLFNSMERDHNIRPI 569


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 187/587 (31%), Positives = 306/587 (52%), Gaps = 47/587 (8%)

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
           ++++Y RD   A AL +  +     +  + +T+ +++ A      +D    V+   D   
Sbjct: 264 ILNVYTRD---ASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYG-RDPVK 319

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
             S+    AL++   + G++  AR LF+++ +   VSWN MI+ Y   G+  EA +LF  
Sbjct: 320 --SIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDR 377

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
           M       N I+W  +  G  + G  +  L+LL  +          +      ACSH+GA
Sbjct: 378 MPFR----NTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGA 433

Query: 326 LKLGKEIHGSAVR-GC-YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS-- 381
           L+ G+++H  AV+ GC +  Y  V NALI+MY +C+++ +   +F     K  ++WNS  
Sbjct: 434 LETGRQVHSLAVKAGCQFNSY--VCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFI 491

Query: 382 -----------------------------MLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
                                        ++S Y   +  +E+   F+ M     +PN  
Sbjct: 492 AALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSP 551

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
            +  +L +C  + + + G++ H   ++  M +E L++ N+L+ MY + G   ++  VFD 
Sbjct: 552 ILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSE-LIVANALMSMYFKCG-CADSHKVFDS 609

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  RD  T+ + I G    G GR A+K++E M    + P+ VT V +L+ACSH+GLV EG
Sbjct: 610 MEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEG 669

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            + F+ M+  YG+ P LEH+ACMVDL GR G +  A++ I  MP  P + +W+ LLGAC+
Sbjct: 670 WQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACK 729

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           IH+N  IG  AAEKL  T P N+G YV+++N+Y++ G W ++A++R  M+  GV K PGC
Sbjct: 730 IHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGC 789

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           +W+   N    F+  D  + + +EI   L  L  L++  GYV   EF
Sbjct: 790 SWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEF 836



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 190/402 (47%), Gaps = 13/402 (3%)

Query: 108 NPVLVP--KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +P++V    ++T Y    + + A  L +    R  + W  +I+ Y ++G   EAL + + 
Sbjct: 349 DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQA 408

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           +    +     +  S   AC  +  ++ GR VHS  + A  +++ +V NAL+SMYGK   
Sbjct: 409 LHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRN 468

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           ++  R++F++M  +D VSWN+ I+A     + ++A  +F  M    +  +V++W TI   
Sbjct: 469 MEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM----LSRDVVSWTTIISA 524

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
             +       +E    M  +    +S    I L  C  +G+ KLG++IH  A++      
Sbjct: 525 YAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSE 584

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V NAL++MY +C     ++ +F    E+ I TWN+ ++G        E+  ++  M  
Sbjct: 585 LIVANALMSMYFKCG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMES 643

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            GV PN VT   +L  C+    +  G +F   + R       L  +  +V++  R+G V 
Sbjct: 644 VGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQ 703

Query: 465 EA-KSVFDLMSRRDEVTYTSLIAGYGIQGEG----RVALKLF 501
            A K ++D+    D V +++L+    I        R A KLF
Sbjct: 704 GAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLF 745



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 208/461 (45%), Gaps = 37/461 (8%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + WN +IS Y   G   +A  ++       I G N    ++L +    +    GRV+
Sbjct: 62  RDIIAWNSMISAYCNSGMLEDARILFDA-----ISGGNVRTATILLSGYARL----GRVL 112

Query: 198 HS--CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            +    D   E +    NA+VS Y + G + +ARRLFD M  RD  SWN+M++ Y     
Sbjct: 113 DARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQ 172

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             +A+ LF +M +     N++TW  +  G +R        ++   M  +    D      
Sbjct: 173 MVDAWNLFKQMPQR----NLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFAS 228

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR-CKDLRHAYILFKMTAEK 374
            L A + +  L + + +    ++  +     +  +++ +Y+R    L  A   F    E+
Sbjct: 229 VLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVER 288

Query: 375 SIITWNSMLSGYTH---LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           +  TW++M++  +H   +D A   A   R+  +S   P+   + + L  C R+   +   
Sbjct: 289 NEYTWSTMIAALSHGGRIDAA--IAVYGRDPVKS--IPSQTALLTGLARCGRITEAR--- 341

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
                IL   + +  ++ WN+++  Y ++G V EAK +FD M  R+ +++  +IAGY   
Sbjct: 342 -----ILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQN 396

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G    AL L + +++N + P   ++ +   ACSH G  +E  +Q   +    G   Q   
Sbjct: 397 GRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIG-ALETGRQVHSLAVKAGC--QFNS 453

Query: 552 FAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           + C  ++ +YG+   +   +++  +M    T + W + + A
Sbjct: 454 YVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS-WNSFIAA 493



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 181/399 (45%), Gaps = 34/399 (8%)

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           R VH  +D         H+A +    + G++  AR +FD M  RD ++WN+MISAY + G
Sbjct: 25  RSVHRALDKS------AHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSG 78

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           + ++A  LF  +       NV T   +  G  R G       +   M  + T    VA  
Sbjct: 79  MLEDARILFDAISGG----NVRTATILLSGYARLGRVLDARRVFDGMPERNT----VAWN 130

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             +      G + + + +  +        +    N+++T Y   + +  A+ LFK   ++
Sbjct: 131 AMVSCYVQNGDITMARRLFDAMPSRDVTSW----NSMVTGYCHSRQMVDAWNLFKQMPQR 186

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           +++TW  M+SGY  ++   +   +FR M   G  P+    AS+L     + +L   +   
Sbjct: 187 NLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLR 246

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPE-AKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
             +L+   F   +++  S++ +Y R     + A   FD M  R+E T++++IA     G 
Sbjct: 247 PLVLKTG-FESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGR 305

Query: 494 GRVALKLFEEMNKNQIK--PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
              A+ ++    ++ +K  P    ++  L+ C   G + E +  FE++       P +  
Sbjct: 306 IDAAIAVY---GRDPVKSIPSQTALLTGLARC---GRITEARILFEQIPD-----PIVVS 354

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +  M+  Y + G++++AKE+  +MP+  T + WA ++  
Sbjct: 355 WNAMITGYMQNGMVDEAKELFDRMPFRNTIS-WAGMIAG 392



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 118/586 (20%), Positives = 215/586 (36%), Gaps = 149/586 (25%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L++ YA      +A  + +    R  + WN ++S YV++G    A  ++  M SR +   
Sbjct: 101 LLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVT-- 158

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
                                           W     N++V+ Y    Q+  A  LF +
Sbjct: 159 -------------------------------SW-----NSMVTGYCHSRQMVDAWNLFKQ 182

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M +R+ V+W  MIS Y       + + +F  M  EG   +   + ++        +  GV
Sbjct: 183 MPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDL-GV 241

Query: 295 LELLSRMRTQETYLDSVATVIG-----------------------------------LGA 319
           LE+L  +  +  +   V  VIG                                   + A
Sbjct: 242 LEVLRPLVLKTGFESDV--VIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAA 299

Query: 320 CSHVGALKLGKEIHG-SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
            SH G +     ++G   V+    +      AL+T  +RC  +  A ILF+   +  +++
Sbjct: 300 LSHGGRIDAAIAVYGRDPVKSIPSQ-----TALLTGLARCGRITEARILFEQIPDPIVVS 354

Query: 379 WNSMLSGYTHLDCAEESAFLFREM-------------------------------FRSGV 407
           WN+M++GY      +E+  LF  M                                R+G+
Sbjct: 355 WNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGM 414

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILR--------------------------RA 441
            P+  ++ S    C+ +  L+ G++ H   ++                          R 
Sbjct: 415 LPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQ 474

Query: 442 MFN----EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           +FN    +  + WNS +    ++  + +A+ +FD M  RD V++T++I+ Y     G  A
Sbjct: 475 VFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEA 534

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           ++ F+ M     KP+   +  +LS C   G    GQ Q   +   +G+  +L     ++ 
Sbjct: 535 VEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQ-QIHTVAIKHGMDSELIVANALMS 593

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           +Y + G  +  K +   M        W T +  C  H   G+G  A
Sbjct: 594 MYFKCGCADSHK-VFDSMEERDIFT-WNTFITGCAQH---GLGREA 634



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 38/229 (16%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  CG + +   G+Q+H  AI  G++   ++   L++ Y      ++   + ++   R 
Sbjct: 556 LLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSHK-VFDSMEERD 614

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
              WN  I+   + G   EA+ +Y+ M+S  +  +  T+  +L AC     VD G     
Sbjct: 615 IFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFK 674

Query: 200 CIDACHEWS-LFVHNA-LVSMYGKFGQVDVARR-LFDKMLERDAVSWNTMISA------- 249
            +   +  + L  H A +V + G+ G V  A + ++D  +E D V W+ ++ A       
Sbjct: 675 SMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNA 734

Query: 250 ---------------------------YASKGLWKEAFQLFVEMQEEGV 271
                                      Y+S G+W E  +L   M++ GV
Sbjct: 735 EIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGV 783


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 196/660 (29%), Positives = 330/660 (50%), Gaps = 43/660 (6%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  K+ E F+++R T A  D +  + + ++  CG  + L  G+ LH   +  GLE N  
Sbjct: 240 GHCEKSLEYFSQMRYTHAKTDYI--TISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVC 297

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L++ Y+      +A F+      R  + WN +++ +V +G Y  AL +  +M   R
Sbjct: 298 VCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTR 357

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID--ACHEWSLFVHNALVSMYGKFGQVDVA 228
              +  T+ + L AC    +++  ++VH+ +     H  +L + NALV+MYGKFG +  A
Sbjct: 358 KATNYVTFTTALSAC---YNLETLKIVHAFVILLGLHH-NLIIGNALVTMYGKFGSMAAA 413

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           +R+   M +RD V+WN +I  +A       A + F  ++EEGV VN IT           
Sbjct: 414 QRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYIT----------- 462

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                ++ LLS   + +  LD                   G  IH   V   +     V+
Sbjct: 463 -----IVNLLSAFLSPDDLLDH------------------GMPIHAHIVVAGFELETFVQ 499

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           ++LITMY++C DL  +  +F + A K+  TWN++LS   H    EE+  L  +M   G+ 
Sbjct: 500 SSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIH 559

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            +  + +    +   +  L  G++ H  I++   F  +  + N+ ++MY + G++ +   
Sbjct: 560 LDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHG-FESNDYVLNATMDMYGKCGEIDDVFR 618

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           +      R + ++  LI+     G  + A + F EM    ++PDHVT V++LSACSH GL
Sbjct: 619 ILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGL 678

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           V EG   F  M++ +G+   +EH  C++DL GRAG L +A+  I KMP  PT  +W +LL
Sbjct: 679 VDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLL 738

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
            AC+IH N  +   AA++L E    +   YVL +N+ A+T  W  +  VR  M    ++K
Sbjct: 739 AACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKK 798

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
            P C+WV   N  + F + D  + Q  EIY  L  L +++++AGY+    +  ++   E+
Sbjct: 799 KPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQ 858



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/557 (24%), Positives = 252/557 (45%), Gaps = 55/557 (9%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           ++ A +I  CG +     G Q+    I  GL+    +   L++ + +      A  + ++
Sbjct: 161 NAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDD 220

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
              R  + WN +I+  V +G   ++L  + QM+    + D  T  ++L  CG   ++ +G
Sbjct: 221 MKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWG 280

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H   + +  E ++ V N+L+SMY + G+ + A  +F KM ERD +SWN+M++++   
Sbjct: 281 RGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDN 340

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G +  A +L +EM +     N +T+ T    C      K V                 A 
Sbjct: 341 GNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKIVH----------------AF 384

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           VI LG             +H + + G         NAL+TMY +   +  A  + K+  +
Sbjct: 385 VILLG-------------LHHNLIIG---------NALVTMYGKFGSMAAAQRVCKIMPD 422

Query: 374 KSIITWNSMLSGYTHLDCAEESAFL--FREMFRSGVEPNYVTIASILPLCARVAN-LQHG 430
           +  +TWN+++ G  H D  E +A +  F  +   GV  NY+TI ++L       + L HG
Sbjct: 423 RDEVTWNALIGG--HADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHG 480

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
              H +I+  A F     + +SL+ MYA+ G +  +  +FD+++ ++  T+ ++++    
Sbjct: 481 MPIHAHIV-VAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAH 539

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G G  ALKL  +M  + I  D  +     +   +  L+ EGQ Q   +   +G      
Sbjct: 540 YGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQ-QLHSLIIKHGFESNDY 598

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
                +D+YG+ G ++    I+ + P + +   W  L+ A   H   G  + A E   E 
Sbjct: 599 VLNATMDMYGKCGEIDDVFRILPQ-PRSRSQRSWNILISALARH---GFFQQAREAFHEM 654

Query: 611 -----RPENSGYYVLIA 622
                RP++  +  L++
Sbjct: 655 LDLGLRPDHVTFVSLLS 671



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 132/543 (24%), Positives = 253/543 (46%), Gaps = 55/543 (10%)

Query: 78  AHIIFCCGKVKALAQGK-QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL---VE 133
           A ++  C +   + +G  Q+HA  I  GL  +  +   L+ FY +F        +   +E
Sbjct: 62  ASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIE 121

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             NI   + W  L+  Y  +G   E + VY++++   +  +     +V+++CG ++D   
Sbjct: 122 EPNI---VSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKML 178

Query: 194 G-RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G +V+ S I +  + ++ V N+L+SM+G    ++ A  +FD M ERD +SWN++I+A   
Sbjct: 179 GYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVH 238

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G  +++ + F +M+    + + IT + +                               
Sbjct: 239 NGHCEKSLEYFSQMRYTHAKTDYITISAL------------------------------- 267

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               L  C     L+ G+ +HG  V+        V N+L++MYS+      A  +F    
Sbjct: 268 ----LPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMR 323

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           E+ +I+WNSM++ +        +  L  EM ++    NYVT  + L  C    NL+  K 
Sbjct: 324 ERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSAC---YNLETLKI 380

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H +++   + + +L++ N+LV MY + G +  A+ V  +M  RDEVT+ +LI G+    
Sbjct: 381 VHAFVILLGL-HHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNK 439

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
           E   A++ F  + +  +  +++T+V +LSA      +++          + G   +LE F
Sbjct: 440 EPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGF--ELETF 497

Query: 553 --ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
             + ++ +Y + G LN +  I   +     S+ W  +L A   + + G GE A + +++ 
Sbjct: 498 VQSSLITMYAQCGDLNTSNYIFDVLA-NKNSSTWNAILSA---NAHYGPGEEALKLIIKM 553

Query: 611 RPE 613
           R +
Sbjct: 554 RND 556



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 130/515 (25%), Positives = 230/515 (44%), Gaps = 53/515 (10%)

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           Y+ F    +A  + +    R    WN L+S +VR G+Y +A+  +  M    +R  ++  
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 179 PSVLKAC---GEMMDVDFGRVVH--SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
            S++ AC   G M +  F    H   C  AC    +FV  +L+  YG FG V        
Sbjct: 62  ASLVTACDRSGCMTEGAFQVHAHVIKCGLAC---DVFVGTSLLHFYGTFGWV-------- 110

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
                                   E   +F E++E     N+++W ++  G    G  K 
Sbjct: 111 -----------------------AEVDMVFKEIEEP----NIVSWTSLMVGYAYNGCVKE 143

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
           V+ +  R+R    Y +  A    + +C  +    LG ++ GS ++       +V N+LI+
Sbjct: 144 VMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLIS 203

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           M+  C  +  A  +F    E+  I+WNS+++   H    E+S   F +M  +  + +Y+T
Sbjct: 204 MFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYIT 263

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           I+++LP+C    NL+ G+  H  +++  +   ++ + NSL+ MY+++GK  +A+ VF  M
Sbjct: 264 ISALLPVCGSAQNLRWGRGLHGMVVKSGL-ESNVCVCNSLLSMYSQAGKSEDAEFVFHKM 322

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             RD +++ S++A +   G    AL+L  EM + +   ++VT    LSAC +    +E  
Sbjct: 323 RERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYN----LETL 378

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           K       + G+   L     +V +YG+ G +  A+ +   MP       W  L+G    
Sbjct: 379 KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMP-DRDEVTWNALIGG--- 434

Query: 594 HRNTGIGEWAAEKLLETRPENSGY-YVLIANMYAA 627
           H +      A E     R E     Y+ I N+ +A
Sbjct: 435 HADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSA 469



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 171/392 (43%), Gaps = 40/392 (10%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY KFG ++ A+ +FDKM ER+  SWN ++S +   G +++A Q F  M E GV  +   
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
             ++   C R+G                              C   GA     ++H   +
Sbjct: 61  AASLVTACDRSG------------------------------CMTEGAF----QVHAHVI 86

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           +        V  +L+  Y     +    ++FK   E +I++W S++ GY +  C +E   
Sbjct: 87  KCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMS 146

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           ++R + R GV  N   +A+++  C  + +   G +    +++  + +  + + NSL+ M+
Sbjct: 147 VYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGL-DTTVSVANSLISMF 205

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
                + EA  VFD M  RD +++ S+I      G    +L+ F +M     K D++T+ 
Sbjct: 206 GNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITIS 265

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
           A+L  C  S   +   +    M    G+   +     ++ +Y +AG    A+ +  KM  
Sbjct: 266 ALLPVCG-SAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRE 324

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
               + W +++ +   H + G    A E L+E
Sbjct: 325 RDLIS-WNSMMAS---HVDNGNYPRALELLIE 352


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 210/664 (31%), Positives = 327/664 (49%), Gaps = 82/664 (12%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
           L S+  +I C  +   LA+ + L      L  + NPV    +V  YA    ++ A  L +
Sbjct: 108 LYSWTLMITCYTRNGELAKARNLFNL---LPYKWNPVCCNAMVAGYAKNRQFDEARRLFD 164

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD--V 191
               +  + WN +++ Y R+G     L  +++M  R +   N            M+D  V
Sbjct: 165 AMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNL-----------MVDGFV 213

Query: 192 DFGRVVHSCIDACHEWSLF--VHN----ALVSM---YGKFGQVDVARRLFDKMLERDAVS 242
           + G       D    W  F  + N    + V+M   + +FG++  ARRLFD+M  R+ V+
Sbjct: 214 EVG-------DLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVA 266

Query: 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           WN MI+AY       EA  LF+EM E+    N I+W T+  G +R G      +LL++M 
Sbjct: 267 WNAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQM- 321

Query: 303 TQETYLDSVATVIGLGACSHVGALKLGKEIHGS-AVRG--CYGEYENVRNALITMYSRCK 359
               Y +  A    +        +   ++I    ++R   C+       N +I  YS+C 
Sbjct: 322 ---PYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCW-------NTMIAGYSQCG 371

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-------------- 405
            +  A  LFK   +K I++WN+M++ Y  +   + +  +F EM                 
Sbjct: 372 RMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQ 431

Query: 406 -----------------GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
                            G +P+  T A  L  CA +A LQ GK+ H  +++   +   L 
Sbjct: 432 NGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSG-YATDLF 490

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           + N+L+ MYA+ G +  A+ +F  +   D V++ SLIA Y + G GR ALKLF +M    
Sbjct: 491 VSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEG 550

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + PD VT V +LSACSH GL+ +G K F+ M   Y I P  EH+ACMVDL GRAG L +A
Sbjct: 551 VAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEA 610

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
            +++  M     + +W  LLGAC+IH N  + ++AAEKLLE  P  +  YVL++NM A  
Sbjct: 611 FQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEA 670

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           G WD++A+VR  M++ G  K PG +W++  N    FL +D ++ +A E+  +L  LT  M
Sbjct: 671 GRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELCHILRSLTAHM 730

Query: 689 KDAG 692
           ++  
Sbjct: 731 RNTA 734



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 121/513 (23%), Positives = 226/513 (44%), Gaps = 44/513 (8%)

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           KN V    +++ +A     ++A  L +    R  + WN +I+ Y+ +    EA  ++ +M
Sbjct: 44  KNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKM 103

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
            +R    D +++  ++       ++   R + + +   ++W+    NA+V+ Y K  Q D
Sbjct: 104 PTR----DLYSWTLMITCYTRNGELAKARNLFNLLP--YKWNPVCCNAMVAGYAKNRQFD 157

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            ARRLFD M  +D VSWN+M++ Y   G  +   Q F EM E     +V++WN +  G +
Sbjct: 158 EARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER----DVVSWNLMVDGFV 213

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS-AVRGCYGEYE 345
             G+     E   ++    T    V+ V  L   +  G +   + +     +R       
Sbjct: 214 EVGDLNSSWEFFEKIPNPNT----VSWVTMLCGFARFGKIAEARRLFDQMPIRNVVA--- 266

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
              NA+I  Y +   +  A  LF    EK+ I+W ++++GY  +   +E+  L  +M   
Sbjct: 267 --WNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR 324

Query: 406 GVEP---------------------NYVTIASILPLCARVANL-QHGKEFHCYILRRAMF 443
            V                       N ++I  ++     +A   Q G+      L + M 
Sbjct: 325 NVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMV 384

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
            + ++ WN++V  YA+ G++  A  +F+ M  ++ V++ SLI+G    G    ALK F  
Sbjct: 385 KKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFML 444

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M     KPD  T    LS+C+H   +  G KQ  ++    G    L     ++ +Y + G
Sbjct: 445 MGHEGQKPDQSTFACGLSSCAHLAALQVG-KQLHQLVMKSGYATDLFVSNALITMYAKCG 503

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
            ++ A+ +   + +    + W +L+ A  ++ N
Sbjct: 504 SISSAELLFKDIDHFDVVS-WNSLIAAYALNGN 535



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 167/388 (43%), Gaps = 62/388 (15%)

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +F HN  ++  GK GQ+D A ++F  M  ++ V+ N+MISA+A  G   +A QLF  M +
Sbjct: 15  VFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQ 74

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                N+++WN++    L     +   +L  +M T++ Y    +  + +   +  G L  
Sbjct: 75  R----NIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLY----SWTLMITCYTRNGELAK 126

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
            + +        Y       NA++  Y++ +    A  LF     K +++WNSML+GYT 
Sbjct: 127 ARNLFNLLP---YKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTR 183

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
                     F EM     E + V+   ++     V +L    EF   I      N + +
Sbjct: 184 NGEMRLGLQFFEEM----AERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP-----NPNTV 234

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKN 507
            W +++  +AR GK+ EA+ +FD M  R+ V + ++IA Y        A+ LF EM  KN
Sbjct: 235 SWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKN 294

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            I                                          +  +++ Y R G L++
Sbjct: 295 SIS-----------------------------------------WTTVINGYVRMGKLDE 313

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHR 595
           A++++ +MPY   +A  A + G  Q  R
Sbjct: 314 ARQLLNQMPYRNVAAQTAMISGYVQNKR 341


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 198/627 (31%), Positives = 318/627 (50%), Gaps = 60/627 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIF-----CCGKVKALAQGKQLHA 98
           L+ + G G   +A   ++ +R           +F H+ F      C  ++    G+ +H 
Sbjct: 84  LRSYTGLGCHREALAVYSAMR-----------AFDHLTFPFAAKACAGLRLGRHGRAVHC 132

Query: 99  CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
            A+A G   +  +   L++ Y S      A  +      R  + WN +I+  V++G+   
Sbjct: 133 RALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAER 192

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVS 217
           AL V+ +M +  +  D  T  SVL AC +  D++ GR VH  + D      + V NAL+ 
Sbjct: 193 ALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALID 252

Query: 218 MYGKFGQVDVARRLFDKML-ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
           MYGK   ++ ARR+FD    ++D VSW  MI AY       EA  L  +M   G      
Sbjct: 253 MYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGA----- 307

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
                                         + + V  V  L AC+ + + K  K  H   
Sbjct: 308 -----------------------------AWPNGVTMVYLLSACASMPSGKHAKCTHALC 338

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDCAE 393
           +R        V  ALI  Y+RC  ++    L ++T E+      TWN+ LSGYT     +
Sbjct: 339 IRLGLKSDIAVETALIDAYARCGKMK----LMRLTLERGSWRAETWNAALSGYTVSGREK 394

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           ++  LF+ M    V P+  T+ASILP  A  A+L+ GK  HC++L    F     +   L
Sbjct: 395 KAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLG-FLRSTEIATGL 453

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           +++Y+++G +  A ++F  +  +D V +T++IAGY I G  R A+ L++ M ++  KP+ 
Sbjct: 454 IDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNT 513

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VT+  +L ACSH+G++ EG K F+ M +++G+ P  EH++C+VD+ GRAG + +A  +I 
Sbjct: 514 VTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQ 573

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
            MP+ P++++W  LLGAC +H+N   GE AA++L +  PEN+G YVL+ N+YAA   W  
Sbjct: 574 DMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRD 633

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           +  VR  M + G+ K PG + V+A +V
Sbjct: 634 VQDVRRMMVERGLLKEPGSSLVEARSV 660



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 143/509 (28%), Positives = 230/509 (45%), Gaps = 55/509 (10%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCID 202
           N L+  Y   G + EAL VY  M++     D+ T+P   KAC  +     GR VH   + 
Sbjct: 81  NSLLRSYTGLGCHREALAVYSAMRAF----DHLTFPFAAKACAGLRLGRHGRAVHCRALA 136

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           A      +V NAL+SMY   G V  A  +F  M  R  VSWN +I+     G  + A ++
Sbjct: 137 AGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEV 196

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F EM  +GV +                                   D    V  L AC+ 
Sbjct: 197 FGEMAADGVGI-----------------------------------DRATVVSVLPACAQ 221

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA-EKSIITWNS 381
              L  G+ +H        G+Y  V+NALI MY +C+ L  A  +F     +K +++W +
Sbjct: 222 AKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTA 281

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVE-PNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           M+  Y   D A E+  L  +M  SG   PN VT+  +L  CA + + +H K  H   +R 
Sbjct: 282 MIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRL 341

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            + ++ + +  +L++ YAR GK+   +   +  S R E T+ + ++GY + G  + A++L
Sbjct: 342 GLKSD-IAVETALIDAYARCGKMKLMRLTLERGSWRAE-TWNAALSGYTVSGREKKAIEL 399

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F+ M    ++PD  TM ++L A + S  + EG K         G     E    ++D+Y 
Sbjct: 400 FKRMIAESVRPDSATMASILPAYAESADLKEG-KNIHCFLLTLGFLRSTEIATGLIDVYS 458

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET--RPENSGYY 618
           +AG L+ A  +   +P     A W T++    IH +        ++++E+  +P      
Sbjct: 459 KAGDLDAAWALFQWLPEKDVVA-WTTIIAGYSIHGHARTAILLYDRMVESGGKPNT---- 513

Query: 619 VLIAN-MYAAT--GCWDKLAKVRTCMRDL 644
           V IA  +YA +  G  D+  KV   MR++
Sbjct: 514 VTIATLLYACSHAGMIDEGIKVFKDMRNV 542



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 7/243 (2%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITW-NSMLSGYTHLDCAEESAFLFREMFRSGV 407
           + L  +Y  C     A+ L     +   +++ NS+L  YT L C  E+  ++  M     
Sbjct: 49  HPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAF-- 106

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
             +++T       CA +   +HG+  HC  L  A F     + N+L+ MY   G V  A+
Sbjct: 107 --DHLTFPFAAKACAGLRLGRHGRAVHCRAL-AAGFGGDTYVQNALISMYMSCGDVGAAE 163

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           +VF  M  R  V++ ++IAG    G    AL++F EM  + +  D  T+V+VL AC+ + 
Sbjct: 164 AVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAK 223

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            +  G +   R+    G+   +     ++D+YG+   L  A+ +     +      W  +
Sbjct: 224 DLNTG-RAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAM 282

Query: 588 LGA 590
           +GA
Sbjct: 283 IGA 285


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 308/601 (51%), Gaps = 43/601 (7%)

Query: 63  IRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA 120
           IR+ +     V D + +  +    G++K++  G  +H   +     ++  +   L+  Y 
Sbjct: 104 IRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYM 163

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
           +F     A  + +    R  + WN +IS Y R+G+  +AL ++  M +  +  D+ T  S
Sbjct: 164 NFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVS 223

Query: 181 VLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERD 239
           +L  CG + D++ GR VH  ++       + V NALV+MY K G++D AR +FD+M  RD
Sbjct: 224 MLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRD 283

Query: 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
                                              VITW  +  G    G+ +  LEL  
Sbjct: 284 -----------------------------------VITWTCMINGYTEDGDVENALELCR 308

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
            M+ +    ++V     +  C     +  GK +HG AVR        +  +LI+MY++CK
Sbjct: 309 LMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCK 368

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
            +   + +F   ++     W+++++G    +   ++  LF+ M R  VEPN  T+ S+LP
Sbjct: 369 RVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLP 428

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR--- 476
             A +A+L+     HCY L +  F   L     LV +Y++ G +  A  +F+ +  +   
Sbjct: 429 AYAALADLRQAMNIHCY-LTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKS 487

Query: 477 -DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            D V + +LI+GYG+ G+G  AL++F EM ++ + P+ +T  + L+ACSHSGLV EG   
Sbjct: 488 KDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTL 547

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  M   Y    +  H+ C+VDL GRAG L++A  +IT +P+ PTS +W  LL AC  H 
Sbjct: 548 FRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHE 607

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  +GE AA KL E  PEN+G YVL+AN+YAA G W  + KVR+ M ++G+RK PG + +
Sbjct: 608 NVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTI 667

Query: 656 D 656
           +
Sbjct: 668 E 668



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 152/531 (28%), Positives = 249/531 (46%), Gaps = 53/531 (9%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           +++++ K LH C +  G   +  ++  L   YA       A  L E       L +N++I
Sbjct: 29  QSISKTKALH-CHVITGGRVSGHILSTLSVTYALCGHITYARKLFEEMPQSSLLSYNIVI 87

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIR--GDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
            +YVR+G Y +A+ V+ +M S  ++   D +TYP V KA GE+  +  G VVH  I    
Sbjct: 88  RMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRI--LR 145

Query: 206 EW---SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
            W     +V NAL++MY  FG+V++AR +FD M  RD +SWNTMIS Y   G   +A  +
Sbjct: 146 SWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMM 205

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M  E V+                                   LD    V  L  C H
Sbjct: 206 FDWMVNESVD-----------------------------------LDHATIVSMLPVCGH 230

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +  L++G+ +H        G+   V+NAL+ MY +C  +  A  +F     + +ITW  M
Sbjct: 231 LKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCM 290

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++GYT     E +  L R M   GV PN VTIAS++ +C     +  GK  H + +R+ +
Sbjct: 291 INGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQV 350

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE-GRVALKLF 501
           +++ +++  SL+ MYA+  +V     VF   S+     ++++IAG  +Q E    AL LF
Sbjct: 351 YSD-IIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAG-CVQNELVSDALGLF 408

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           + M +  ++P+  T+ ++L A +    + +       +T   G    L+    +V +Y +
Sbjct: 409 KRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKT-GFMSSLDAATGLVHVYSK 467

Query: 562 AGLLNKAKEI---ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
            G L  A +I   I +   +    +W  L+    +H   G G  A +  +E
Sbjct: 468 CGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH---GDGHNALQVFME 515



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 174/356 (48%), Gaps = 34/356 (9%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           Y S+L        +   + +H  +      S  + + L   Y   G +  AR+LF++M +
Sbjct: 18  YQSLLNHFAATQSISKTKALHCHVITGGRVSGHILSTLSVTYALCGHITYARKLFEEMPQ 77

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
              +S+N +I  Y  +GL+ +A  +F+ M  EGV+            C+  G        
Sbjct: 78  SSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVK------------CVPDG-------- 117

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
                   TY   VA   G      + ++KLG  +HG  +R  +G  + V+NAL+ MY  
Sbjct: 118 -------YTY-PFVAKAAG-----ELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMN 164

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
              +  A  +F +   + +I+WN+M+SGY       ++  +F  M    V+ ++ TI S+
Sbjct: 165 FGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSM 224

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP+C  + +L+ G+  H  ++      + + + N+LV MY + G++ EA+ VFD M RRD
Sbjct: 225 LPVCGHLKDLEMGRNVH-KLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRD 283

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            +T+T +I GY   G+   AL+L   M    ++P+ VT+ +++S C  +  V +G+
Sbjct: 284 VITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGK 339


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 204/644 (31%), Positives = 337/644 (52%), Gaps = 47/644 (7%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYAS 121
           + I A+S+ V+L +F          +   +G+++HA  I   L    +L+   LV  YA 
Sbjct: 346 VEINASSYAVLLSAFTEF---SNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAK 402

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
            +  +NA  + +    +  + WN +IS    +  + EA+  +  M+   +    F+  S 
Sbjct: 403 CNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVIST 462

Query: 182 LKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           L +C  +  +  G+ +H     C  +  + V NAL+++Y +   ++  +++F  M E D 
Sbjct: 463 LSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQ 522

Query: 241 VSWNTMISAYA-SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
           VSWN+ I A A S+    +A + F+EM + G + N +T+  I                  
Sbjct: 523 VSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILS---------------- 566

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
                              A S +  L+LG++IH   ++    +   + N L+  Y +C+
Sbjct: 567 -------------------AVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCE 607

Query: 360 DLRHAYILF-KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
            +    I+F +M+  +  ++WN+M+SGY H     ++  L   M + G   +  T+A++L
Sbjct: 608 QMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVL 667

Query: 419 PLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
             CA VA L+ G E H C I  RA     +++ ++LV+MYA+ GK+  A   F+LM  R+
Sbjct: 668 SACASVATLERGMEVHACAI--RACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRN 725

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
             ++ S+I+GY   G G  ALKLF +M ++   PDHVT V VLSACSH GLV EG + F+
Sbjct: 726 IYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFK 785

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC--QIHR 595
            M  +Y + P++EHF+CMVDL GRAG + K +E I  MP  P + +W T+LGAC     R
Sbjct: 786 SMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSR 845

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           NT +G  AA+ L+E  P N+  YVL++NM+AA G W+ + + R  MR+  V+K  GC+WV
Sbjct: 846 NTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWV 905

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
              +    F+  D ++ + ++IY  L  +   M+D GYV + ++
Sbjct: 906 TMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKY 949



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 237/506 (46%), Gaps = 44/506 (8%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           QLH      GL  +      LV  +       +A  L +    +  + W+ L+S Y ++G
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD--VDFGRVVHSCID-ACHEWSLFV 211
              EA  +++ + S  +  +++   S L+AC E+    +  G  +H  I  + +   + +
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVL 179

Query: 212 HNALVSMYGK-FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
            N L+SMY      +D ARR+F+++  + + SWN++IS Y  +G    AF+LF  MQ E 
Sbjct: 180 SNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREA 239

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG-ALKLG 329
            E+N                           R  E    S+ TV    ACS V   L L 
Sbjct: 240 TELNC--------------------------RPNEYTFCSLVTV----ACSLVDCGLTLL 269

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +++     +  + +   V +AL++ ++R   +  A ++F+   +++ +T N ++ G    
Sbjct: 270 EQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQ 329

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK----EFHCYILRRAMFNE 445
              EE+A +F+EM +  VE N  + A +L      +NL+ GK    E H Y++R A+ + 
Sbjct: 330 HQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDV 388

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
            +L+ N+LV +YA+   +  A+S+F LM  +D V++ S+I+G         A+  F  M 
Sbjct: 389 WILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMR 448

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           +N + P   ++++ LS+C+  G ++ GQ Q        G+   +     ++ LY     +
Sbjct: 449 RNGMVPSKFSVISTLSSCASLGWIMLGQ-QIHGEGIKCGLDLDVSVSNALLTLYAETDCM 507

Query: 566 NKAKEIITKMP-YTPTSAMWATLLGA 590
            + +++   MP Y   S  W + +GA
Sbjct: 508 EEYQKVFFLMPEYDQVS--WNSFIGA 531


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  315 bits (808), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 188/564 (33%), Positives = 294/564 (52%), Gaps = 59/564 (10%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + WN +IS YV +G     L +YKQM    I  D  T  SVL  C +   +  G+ V
Sbjct: 76  RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAV 135

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           HS  I +  E  +   N L+ MY K G +D A R+                         
Sbjct: 136 HSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV------------------------- 170

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
                 F +M E     NV++W ++  G  R G   G + LL +M  +   LD VA    
Sbjct: 171 ------FEKMGER----NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSI 220

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L AC+  G+L  GK++H             V NAL+ MY++C  +  A  +F     K I
Sbjct: 221 LHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDI 280

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           I+WN+M+                       ++P+  T+A ILP CA ++ L+ GKE H Y
Sbjct: 281 ISWNTMVGE---------------------LKPDSRTMACILPACASLSALERGKEIHGY 319

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           ILR   ++    + N+LV++Y + G +  A+ +FD++  +D V++T +IAGYG+ G G  
Sbjct: 320 ILRNG-YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNE 378

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A+  F EM    I+PD V+ +++L ACSHSGL+ +G + F  M + + I P+LEH+ACMV
Sbjct: 379 AIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMV 438

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL  R G L+KA + I  +P  P + +W  LL  C+I+ +  + E  AE++ E  PEN+G
Sbjct: 439 DLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTG 498

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV-DDTSNVQAQ 675
           YYVL+AN+YA    W+++ ++R  +   G+RK PGC+W++     + F+  +++S+  ++
Sbjct: 499 YYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSK 558

Query: 676 EIYPLLGGLTELMKDAGYVVKEEF 699
           +I  LL  +   MK+ GY  K ++
Sbjct: 559 KIESLLKKMRRKMKEEGYFPKTKY 582



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/419 (29%), Positives = 200/419 (47%), Gaps = 55/419 (13%)

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE-- 272
           LVS Y   G +   RR+FD M +++   WN M+S YA  G +KE+  LF  M E+G+E  
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 273 --------------VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
                          +VI+WN++  G +  G  +  L +  +M      +D    +  L 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
            C+  G L LGK +H  A++  +    N  N L+ MYS+C DL  A  +F+   E+++++
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W SM++GYT    ++ +  L ++M + GV+ + V I SIL  CAR  +L +GK+ H YI 
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 241

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
              M + +L + N+L++MYA+ G +  A SVF  M  +D +++ +++             
Sbjct: 242 ANNMAS-NLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------------ 288

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI-----FPQLEHFA 553
                    ++KPD  TM  +L AC+            ER   I+G      +    H A
Sbjct: 289 ---------ELKPDSRTMACILPACA-------SLSALERGKEIHGYILRNGYSSDRHVA 332

Query: 554 -CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
             +VDLY + G+L  A+ +   +P +     W  ++    +H   G G  A     E R
Sbjct: 333 NALVDLYVKCGVLGLARLLFDMIP-SKDLVSWTVMIAGYGMH---GYGNEAIATFNEMR 387



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 196/439 (44%), Gaps = 64/439 (14%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           DV L +   ++  C K   L+ GK +H+ AI    E+       L+  Y+     + A  
Sbjct: 110 DVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALR 169

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           + E    R  + W  +I+ Y RDG+   A+ + +QM+   ++ D     S+L AC     
Sbjct: 170 VFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGS 229

Query: 191 VDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +D G+ VH  I A +  S LFV NAL+ MY K G ++ A  +F  M+ +D +SWNTM+  
Sbjct: 230 LDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG- 288

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
                                                         EL    RT    L 
Sbjct: 289 ----------------------------------------------ELKPDSRTMACILP 302

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           + A+         + AL+ GKEIHG  +R  Y    +V NAL+ +Y +C  L  A +LF 
Sbjct: 303 ACAS---------LSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD 353

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
           M   K +++W  M++GY       E+   F EM  +G+EP+ V+  SIL  C+    L+ 
Sbjct: 354 MIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQ 413

Query: 430 GKEFHCYILRRAMFNE-HLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAG 487
           G  F  YI++     E  L  +  +V++ +R+G + +A K +  L    D   + +L+ G
Sbjct: 414 GWRFF-YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472

Query: 488 ----YGIQGEGRVALKLFE 502
               + I+   +VA ++FE
Sbjct: 473 CRIYHDIELAEKVAERVFE 491


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  315 bits (808), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 199/663 (30%), Positives = 329/663 (49%), Gaps = 41/663 (6%)

Query: 31  NNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKAL 90
           N  +I+  N++  +  F   G   K+ E ++  +    +  +V  SF      C   + L
Sbjct: 205 NRSNIVAWNVM--IGGFVENGMWEKSLELYSLAK--NENCKLVSASFTGAFTACSHGEVL 260

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
             G+Q+H   I +  + +P +   L+T YA      +A  + +    +     N +IS +
Sbjct: 261 DFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAF 320

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSL 209
           + +G   +AL +Y +M++     D+FT  S+L  C  +   DFGR VH+  I    + ++
Sbjct: 321 IGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNV 380

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            + +AL++MY K G  + A  +F  M ERD                              
Sbjct: 381 AIQSALLTMYYKCGSTEDADSVFYTMKERD------------------------------ 410

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
                V+ W ++  G  +   FK  L+L   M  +    DS      + A   +  ++LG
Sbjct: 411 -----VVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELG 465

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
             IHG A++        V  +L+ MYS+      A ++F     K+++ WNSM+S Y+  
Sbjct: 466 HLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWN 525

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              E S  L  ++ + G   + V+I ++L   + VA L  GK  H Y +R  + ++ L +
Sbjct: 526 GLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSD-LQV 584

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N+L++MY + G +  A+ +F+ M RR+ VT+ S+IAGYG  G    A++LF+EM +++ 
Sbjct: 585 ENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSET 644

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            PD VT +A++++CSHSG+V EG   F+ M   YG+ P++EH+A +VDL GRAG L+ A 
Sbjct: 645 APDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAY 704

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
             I  MP     ++W  LL AC+ HRN  +GE  A+ LL+  P     YV + N+Y    
Sbjct: 705 SFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVE 764

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            WD+ A +R  M+  G++K PGC+W++  N    F   D+S+ +  EIY  L  L   M+
Sbjct: 765 MWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKTLSSLKSNME 824

Query: 690 DAG 692
             G
Sbjct: 825 GKG 827



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 140/572 (24%), Positives = 249/572 (43%), Gaps = 77/572 (13%)

Query: 17  QLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDS 76
              +FI +K+      E    IN    +K    +G  S+A E  ++   +A +      +
Sbjct: 2   HFNQFISRKFYSLRQTEVSPSIN--SKIKALVQQGKYSQALELHSKTPHSALT--TAKFT 57

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-S 135
           F  ++  C  +  L  G+ +HA  + +GL+ +P +   L+  Y    L  +A  + +  S
Sbjct: 58  FPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMS 117

Query: 136 NIRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
             R   P    WN +I  Y + G + E L  + +MQ                   E+   
Sbjct: 118 ESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQ-------------------ELSWY 158

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISA 249
             GR +H   I    E   ++  AL+ MY    +   A  LF K+  R + V+WN MI  
Sbjct: 159 MAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGG 218

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           +   G+W+++ +L+   + E  +             L + +F G                
Sbjct: 219 FVENGMWEKSLELYSLAKNENCK-------------LVSASFTGAFT------------- 252

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
                    ACSH   L  G+++H   ++  + +   V  +L+TMY++   +  A  +F 
Sbjct: 253 ---------ACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFD 303

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP-NYVTIASILPLCARVANLQ 428
              +K +   N+M+S +     A ++  L+ +M ++G  P +  TI+S+L  C+ V +  
Sbjct: 304 QVLDKEVELRNAMISAFIGNGRAYDALGLYNKM-KAGETPVDSFTISSLLSGCSVVGSYD 362

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G+  H  +++R+M   ++ + ++L+ MY + G   +A SVF  M  RD V + S+IAG+
Sbjct: 363 FGRTVHAEVIKRSM-QSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGF 421

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
                 + AL LF  M K  +K D   M +V+SA    GL +E   +   +   + I   
Sbjct: 422 CQNRRFKDALDLFRAMEKEGVKADSDVMTSVISA----GLGLE-NVELGHLIHGFAIKRG 476

Query: 549 LEH---FAC-MVDLYGRAGLLNKAKEIITKMP 576
           LE     AC +VD+Y + G    A+ + + MP
Sbjct: 477 LESDVFVACSLVDMYSKFGFAESAEMVFSSMP 508


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  315 bits (808), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 196/633 (30%), Positives = 313/633 (49%), Gaps = 73/633 (11%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF---LVENSNIRYPLPWNL 145
           ++A+ K++HA  I+ GL  +   + +LV F A  S + N  +   ++ N+       WN+
Sbjct: 66  SMAKMKEIHAQMISTGLISDGFALSRLVAFCA-ISEWRNLDYCDKILNNAANLNXFSWNM 124

Query: 146 LISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLKAC-GEMMDVDFGRVVHSCIDA 203
            I  YV       A+ +Y+ M  +     DN+TYP + K C G  +      ++   I  
Sbjct: 125 AIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQL 184

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             +  LFVHNA++ +    G++  AR+LFD+   RD VSW                    
Sbjct: 185 GFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSW-------------------- 224

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
                          N+I  G +R G      +L  +M       D V  +  + A + +
Sbjct: 225 ---------------NSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQL 269

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L LG+++H S           + NAL+ MY +CK++  A ILF+   +K++++W +M+
Sbjct: 270 ENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMV 329

Query: 384 SGYTHLDCAE-------------------------------ESAFLFREMFRSGVEPNYV 412
            GY      E                               E+  LF EM  S V P+ +
Sbjct: 330 IGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKI 389

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T+ + L  C+++  L  G   H Y+ +  +   ++ L  +LV+MYA+ G + +A  VF+ 
Sbjct: 390 TVVNCLSACSQLGALDVGIWMHHYVDKHNL-TMNVALGTALVDMYAKCGNIKKAIQVFEE 448

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  R+ +T+T++I G  + G+   A+  F EM    + PD +T + VLSAC H GLV +G
Sbjct: 449 MPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQG 508

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           +  F +MTS YGI P+L+H++C+VDL GRAG L +A+E+I  MP+ P + +W  L    +
Sbjct: 509 RDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSR 568

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           IH N  +GE AA KLLE  P + G YVL+ANMY     W++  KVR  M + GV K PGC
Sbjct: 569 IHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGC 628

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           + ++   +   F++ D S+ Q+++IY  L  LT
Sbjct: 629 SSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLT 661



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 122/275 (44%), Gaps = 9/275 (3%)

Query: 317 LGACSHVGALKLGKEIHGSAVR-GCYGE-YENVRNALITMYSRCKDLRHAYILFKMTAEK 374
           L AC+ +  +K   EIH   +  G   + +   R       S  ++L +   +    A  
Sbjct: 61  LEACTSMAKMK---EIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANL 117

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE-PNYVTIASILPLCARVANLQHGKEF 433
           +  +WN  + GY   +    +  L+R M R G   P+  T   +  +CA  +      E 
Sbjct: 118 NXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
             ++++   F+  L + N+++ +    G++  A+ +FD    RD V++ S+I GY   G 
Sbjct: 178 LGHVIQLG-FDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGL 236

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A  L+ +M +  + PD VTM+ V+SA +    +  G+K  + +  + G+   +    
Sbjct: 237 ADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEM-GLNLTVPLAN 295

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            ++D+Y +   +  AK +   M    T   W T++
Sbjct: 296 ALMDMYIKCKNIEAAKILFENMT-KKTVVSWTTMV 329



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 5/195 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A   F  ++ ++ + D +  +  + +  C ++ AL  G  +H       L  N  L   
Sbjct: 371 EALALFHEMQASSVAPDKI--TVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTA 428

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV  YA       A  + E    R  L W  +I      G    A+  + +M S  +  D
Sbjct: 429 LVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS--LFVHNALVSMYGKFGQVDVARRLF 232
             T+  VL AC     VD GR     + + +  S  L  ++ LV + G+ G ++ A  L 
Sbjct: 489 EITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELI 548

Query: 233 DKM-LERDAVSWNTM 246
             M  E DAV W  +
Sbjct: 549 RSMPFEPDAVVWGAL 563


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 186/631 (29%), Positives = 327/631 (51%), Gaps = 56/631 (8%)

Query: 76   SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
            +F  ++  C  + +L  G+Q+H   I  G++ +  +   ++  Y+     + A  L    
Sbjct: 427  TFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLI 486

Query: 136  NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             ++  + WN LI     +    EA+ + K+M+   I  D  ++ + + AC  +  ++ G+
Sbjct: 487  PVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGK 546

Query: 196  VVHSC---IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
             +HS     + C   +  V ++L+ +Y KFG V+ +R++   +     V  N +I+    
Sbjct: 547  QIHSASIKYNVCSNHA--VGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQ 604

Query: 253  KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                 EA +LF ++ ++G + +  T+ +I  GC R                       V+
Sbjct: 605  NNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTR----------------------PVS 642

Query: 313  TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN-------ALITMYSRCKDLRHAY 365
            +VIG             K++H      CY     + N       +L+ +Y +CK L  A 
Sbjct: 643  SVIG-------------KQVH------CYTLKSAILNQDTSLGISLVGIYLKCKLLEDAN 683

Query: 366  ILFKMTAE-KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             L +   + K+++ W + +SGY     + +S  +F  M    V  +  T  S+L  C+ +
Sbjct: 684  KLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEM 743

Query: 425  ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTS 483
            A L  GKE H  I++   F  +    ++L++MY++ G V  +  +F +L +R++ + + S
Sbjct: 744  AALTDGKEIHGLIVKSG-FVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMPWNS 802

Query: 484  LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
            +I G+   G    AL LF++M ++QIKPD VT++ VL ACSH+GL+ EG   F+ M+ +Y
Sbjct: 803  MIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQVY 862

Query: 544  GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
            GI P+++H+AC++DL GR G L KA+E+I ++P+     +WAT L ACQ+H++   G+ A
Sbjct: 863  GIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGKVA 922

Query: 604  AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
            A+KL+E  P++S  YV +++++AA G W +    R  MR+ GV K PGC+W+  GN  S 
Sbjct: 923  AKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGNKQSV 982

Query: 664  FLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            F+V DT +  A  IY +L  LT +M   G +
Sbjct: 983  FVVQDTHHPDALSIYKMLDDLTGMMNKDGRI 1013



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 248/515 (48%), Gaps = 38/515 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA I+     + A  +G+Q+HA A+  GL+ N  +   L+  Y      ++A  + + S
Sbjct: 326 TFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFS 385

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN ++  +V++    E + +++ M+   +  D+FT+ SVL AC  +  +D GR
Sbjct: 386 TEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGR 445

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   I    +  LFV NA++ MY K G +DVA+ LF  +  +D+VSWN +I   A   
Sbjct: 446 QVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHN- 504

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                       +EEG  +N                      +L RM+     LD V+  
Sbjct: 505 ------------EEEGEAIN----------------------MLKRMKFYGIALDEVSFA 530

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + ACS++ A++ GK+IH ++++        V ++LI +YS+  D+  +  +       
Sbjct: 531 TAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDAS 590

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           SI+  N++++G    +  +E+  LF+++ + G +P+  T  SIL  C R  +   GK+ H
Sbjct: 591 SIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVH 650

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGYGIQGE 493
           CY L+ A+ N+   L  SLV +Y +   + +A  +  ++   ++ V +T+ I+GY   G 
Sbjct: 651 CYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGY 710

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              +L +F  M    ++ D  T  +VL ACS    + +G K+   +    G        +
Sbjct: 711 SVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDG-KEIHGLIVKSGFVSYETATS 769

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            ++D+Y + G +  + EI  ++        W +++
Sbjct: 770 ALMDMYSKCGDVISSFEIFKELKNRQNIMPWNSMI 804



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/485 (25%), Positives = 229/485 (47%), Gaps = 39/485 (8%)

Query: 146 LISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDA 203
           ++S + R G   + L  +++++ S     D F    VL AC  +  ++ GR VH   + +
Sbjct: 127 VLSCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKS 186

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
               S+F    LV MY K G+VD ARR+FD +   D + W +MI+ Y   G +++A  LF
Sbjct: 187 GFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALF 246

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-------------LDS 310
             M++ G   + +T  TI       G       LL R+R   T              LDS
Sbjct: 247 SRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDS 306

Query: 311 VATVIGL--------------------GACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
              V GL                     A +++ A   G++IH +AV+        V ++
Sbjct: 307 --EVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSS 364

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI +Y +   +  A  +F  + EK+I+ WN++L G+   +  EE+  +F+ M R+ +E +
Sbjct: 365 LINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEAD 424

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             T  S+L  C  + +L  G++ HC  ++  M +  L + N++++MY++ G +  AK++F
Sbjct: 425 DFTFVSVLGACINLYSLDLGRQVHCITIKNGM-DADLFVANAMLDMYSKLGAIDVAKALF 483

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
            L+  +D V++ +LI G     E   A+ + + M    I  D V+    ++ACS+    +
Sbjct: 484 SLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNI-WAI 542

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           E  KQ    +  Y +       + ++DLY + G +  +++++  +  +    + A + G 
Sbjct: 543 ETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGL 602

Query: 591 CQIHR 595
            Q +R
Sbjct: 603 VQNNR 607



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/493 (23%), Positives = 228/493 (46%), Gaps = 40/493 (8%)

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           +G   + V    +++  AS     +A  L++   +   + WN +I+ Y + G  +E   +
Sbjct: 252 MGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGL 311

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGK 221
           YK M+ + +     T+ S+L A   M   D GR +H + +    + ++FV ++L+++Y K
Sbjct: 312 YKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVK 371

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  A+++FD   E++ V WN ++  +    L +E  Q+F  M+   +E +  T+ ++
Sbjct: 372 HGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSV 431

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              LGAC ++ +L LG+++H   ++   
Sbjct: 432 -----------------------------------LGACINLYSLDLGRQVHCITIKNGM 456

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V NA++ MYS+   +  A  LF +   K  ++WN+++ G  H +   E+  + + 
Sbjct: 457 DADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKR 516

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   G+  + V+ A+ +  C+ +  ++ GK+ H   ++  + + H  + +SL+++Y++ G
Sbjct: 517 MKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNH-AVGSSLIDLYSKFG 575

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            V  ++ V   +     V   +LI G         A++LF+++ K+  KP + T  ++LS
Sbjct: 576 DVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILS 635

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPT 580
            C+     V G KQ    T    I  Q       +V +Y +  LL  A +++ ++P    
Sbjct: 636 GCTRPVSSVIG-KQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKN 694

Query: 581 SAMW-ATLLGACQ 592
              W AT+ G  Q
Sbjct: 695 LVEWTATISGYAQ 707


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 172/523 (32%), Positives = 289/523 (55%), Gaps = 38/523 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y S + AC +  +++  R +H+ + +       F+ N+L+ MY K   V  AR +FD+M 
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            +D VSW ++I+ YA   +  EA  L   M +   + N  T+ ++               
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASL--------------- 158

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
               ++    Y DS                  G++IH  AV+  + E   V +AL+ MY+
Sbjct: 159 ----LKAAGAYADS----------------GTGRQIHALAVKCGWHEDVYVGSALLDMYA 198

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           RC  +  A  +F     K+ ++WN+++SG+      E +   F EM R+G E  + T +S
Sbjct: 199 RCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSS 258

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +    AR+  L+ GK  H ++++         + N+L++MYA+SG + +A+ VFD +  +
Sbjct: 259 VFSSIARLGALEQGKWVHAHVIKSRQ-KLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNK 317

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D VT+ S++  +   G G+ A+  FEEM K+ +  + +T + +L+ACSH GLV EG++ F
Sbjct: 318 DLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYF 377

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           E M   Y + P+++H+  +V L GRAGLLN A   I KMP  PT+A+W  LL AC++H+N
Sbjct: 378 EMMKE-YDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKN 436

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             +G++AA+ + E  P++SG  VL+ N+YA+TG WD  A+VR  M+  GV+K P C+WV+
Sbjct: 437 AKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVE 496

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
             N    F+ +D ++ QA+EIY + G +++ ++  GYV   ++
Sbjct: 497 MENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDY 539



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 160/359 (44%), Gaps = 38/359 (10%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           +   I  C + K L   +++HA   +     +  L   L+  Y       +A  + +   
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            +  + W  LI+ Y ++    EA+ +   M   R + + FT+ S+LKA G   D   GR 
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ 173

Query: 197 VHSCIDAC--HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           +H+    C  HE  ++V +AL+ MY + G++D+A  +FDK+  ++ VSWN +IS +A KG
Sbjct: 174 IHALAVKCGWHE-DVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             + A   F EM   G E    T++++                                 
Sbjct: 233 DGESALMTFAEMLRNGFEATHFTYSSV--------------------------------- 259

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
               + + +GAL+ GK +H   ++        V N L+ MY++   +  A  +F     K
Sbjct: 260 --FSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNK 317

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
            ++TWNSML+ +      +E+   F EM +SGV  N +T   IL  C+    ++ GK +
Sbjct: 318 DLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRY 376



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++   G       G+Q+HA A+  G  ++  +   L+  YA     + A  + +  
Sbjct: 154 TFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + WN LIS + R G    AL  + +M        +FTY SV  +   +  ++ G+
Sbjct: 214 DSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGK 273

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  I +  + + FV N L+ MY K G +  AR++FD++  +D V+WN+M++A+A  G
Sbjct: 274 WVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYG 333

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ--ETYLDSVA 312
           L KEA   F EM++ GV +N IT+  I   C   G  K        M+    E  +D   
Sbjct: 334 LGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYV 393

Query: 313 TVIGL 317
           TV+ L
Sbjct: 394 TVVAL 398


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 180/575 (31%), Positives = 310/575 (53%), Gaps = 40/575 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C + KA   G  +H   +  G   N  L  KL+ FY+      +A  + +    R  + W
Sbjct: 7   CIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSW 66

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           +  IS Y ++G Y +AL V+  M     + + FTY SVL+AC  +  +  G  +  C++ 
Sbjct: 67  SAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEK 126

Query: 204 CHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
               S L V +AL+ ++ K G+++ A  LF  M ERD VSWN +I AYA +G   ++F++
Sbjct: 127 SRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRM 186

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M +EG+  ++ T+ ++      +G    V+ +                         
Sbjct: 187 FRSMMQEGMSPDLFTFGSVLKA---SGMASDVIRVC------------------------ 219

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
                   +IH   ++  YG + ++  +LI  Y++C+ L  A+ L+K    K +I+  ++
Sbjct: 220 --------QIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTAL 271

Query: 383 LSGYTHLDCAEESAF-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR-R 440
           ++GY         A  LF+E+ +  ++ + V + S+  +CA +++L  G++ H   L+ +
Sbjct: 272 MTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCK 331

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
             ++  + + N+L++MYA+SG++ +A   F+ M  ++ +++TSLI GYG  G G  A+ L
Sbjct: 332 PTYD--VAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIAL 389

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F++M    +KP+ +T +++L AC+H GL  EG + F  M S Y I P+ EHF+CMVDL+ 
Sbjct: 390 FKKMEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKYNILPRAEHFSCMVDLFA 449

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           R GLL +A  +I KM   P +++W  +LGAC I+ N  + E AA  L +  PENS  YV+
Sbjct: 450 RGGLLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEAAIHLFKMDPENSVNYVV 509

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           +A++YAA G WD   K+R  M +  ++K PG +++
Sbjct: 510 LADIYAAAGSWDNAWKMRKLMEERNLKKAPGYSFI 544



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 189/423 (44%), Gaps = 55/423 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  ++ L +G Q+  C        N ++   L+  ++      +A +L    
Sbjct: 100 TYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMM 159

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I  Y   GF  ++  +++ M    +  D FT+ SVLKA G   DV    
Sbjct: 160 EERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVC 219

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  I      S + +  +L+  Y K   +  A  L+  M  +D +S   +++ YA   
Sbjct: 220 QIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDS 279

Query: 255 LW-KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
            +  +A  LF E+Q+                                M+  +  L S+  
Sbjct: 280 NYSSKALDLFKEIQQ------------------------------MHMKIDDVILCSMFN 309

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMTA 372
           +     C+++ +L +G++IH  A++ C   Y+  + NALI MY++  +++ A   F    
Sbjct: 310 I-----CANISSLSVGRQIHALALK-CKPTYDVAMGNALIDMYAKSGEIKDANRAFNEME 363

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           EK++I+W S+++GY       E+  LF++M   G++PN +T  S+L  C        G+ 
Sbjct: 364 EKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCG--LTGEG 421

Query: 433 FHCY--------ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
           + C+        IL RA   EH   ++ +V+++AR G + EA ++ + M+ +   +    
Sbjct: 422 WECFNNMISKYNILPRA---EH---FSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGA 475

Query: 485 IAG 487
           I G
Sbjct: 476 ILG 478



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 131/273 (47%), Gaps = 2/273 (0%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L  C    A K G  IH   +   +    ++   LI  YS+  D   A  +F    E+++
Sbjct: 4   LQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTV 63

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++W++ +SGY+   C +++  +F +M R+G + N  T  S+L  C  +  LQ G +    
Sbjct: 64  VSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQG- 122

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            L ++ F  +L++ ++L++++++ GK+ +A  +F +M  RD V++ ++I  Y +QG    
Sbjct: 123 CLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGD 182

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           + ++F  M +  + PD  T  +VL A   +  V+    Q  ++    G    +     ++
Sbjct: 183 SFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIR-VCQIHQLIIQLGYGSHISLSGSLI 241

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           D Y +   L  A  +   MP     +  A + G
Sbjct: 242 DAYAKCESLASAHCLYKSMPMKDMISCTALMTG 274



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 170/383 (44%), Gaps = 55/383 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A +G    +F  F  +     S D+   +F  ++   G    + +  Q+H   I LG  
Sbjct: 174 YAVQGFSGDSFRMFRSMMQEGMSPDLF--TFGSVLKASGMASDVIRVCQIHQLIIQLGYG 231

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY-AEALCVYKQ 165
            +  L   L+  YA      +A  L ++  ++  +    L++ Y RD  Y ++AL ++K+
Sbjct: 232 SHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKE 291

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQ 224
           +Q   ++ D+    S+   C  +  +  GR +H+    C   + + + NAL+ MY K G+
Sbjct: 292 IQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGE 351

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  A R F++M E++ +SW ++I+ Y S G   EA  LF +M+ EG++ N IT+ ++   
Sbjct: 352 IKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSL--- 408

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           L AC+H G    G E   + +     +Y
Sbjct: 409 --------------------------------LFACNHCGLTGEGWECFNNMI----SKY 432

Query: 345 ENVRNA-----LITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSG---YTHLDCAEES 395
             +  A     ++ +++R   L  AY L  KM  + +   W ++L     Y ++  AEE+
Sbjct: 433 NILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEA 492

Query: 396 AF-LFREMFRSGVEPNYVTIASI 417
           A  LF+    + V  NYV +A I
Sbjct: 493 AIHLFKMDPENSV--NYVVLADI 513


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 191/621 (30%), Positives = 317/621 (51%), Gaps = 24/621 (3%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS----------LYNNACFLVENS 135
           K K L    Q+H+  I  G   NP L  +++  ++S S          L+ +  F  ++ 
Sbjct: 23  KSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHR 82

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
               P  WN +I  +       EA  ++  M    +  D F++  VLKAC  +  +  G 
Sbjct: 83  KQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGM 142

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  +      S +F+ N L+ +Y + G + +AR+LFD+M++RD+VS+N+MI  Y   G
Sbjct: 143 QIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHG 202

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN-FKGVLELLSRMRTQETYLDSVAT 313
           + K A +LF  M  E  + N+I+WN++  G  R+    +   EL   M  +    D ++ 
Sbjct: 203 MVKSARELFDVMPME--QKNLISWNSMISGYARSEEGLRVAWELFEEMPKR----DLISW 256

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              +  C   G ++    +     +     + N    ++  Y++  ++  A  LF    E
Sbjct: 257 NSMIDGCVKCGKMENAHHLFNQMPKRDVVSWAN----MVDGYAKLGEIDIARGLFDEMPE 312

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKE 432
           + +I+ N+M++GY       E+   F +M  R  + P+  T+   L   A++ +   G  
Sbjct: 313 RDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVA 372

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HCYI     F+    L  +L++MYA+ G +  A SVF+ +  +    + ++I G  I G
Sbjct: 373 LHCYIEDNG-FSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHG 431

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G VA +LF EM K  +KPD +T + VL+AC+H+GLV EG   FE M  ++ + P+L+H+
Sbjct: 432 LGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHY 491

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CMVD+ GRAG + +AK+ + KMP  P   +W TLL AC+ H N  IGE  A+ L+    
Sbjct: 492 GCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDS 551

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            N   YVL++N+YA  G W+ + ++R  M+   ++KIPGC+ ++       F V D S+ 
Sbjct: 552 YNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHP 611

Query: 673 QAQEIYPLLGGLTELMKDAGY 693
           Q +EIY +L  L+ L  +  Y
Sbjct: 612 QVREIYSMLDSLSALNSEVAY 632



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 187/416 (44%), Gaps = 14/416 (3%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+ ++  C ++  + +G Q+H     + +  +  L   L+  Y        A  L +  
Sbjct: 124 SFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRM 183

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + +N +I  YV+ G    A  ++  M     + +  ++ S++   G     +  R
Sbjct: 184 MKRDSVSFNSMIDGYVKHGMVKSARELFDVMPME--QKNLISWNSMIS--GYARSEEGLR 239

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           V     +   +  L   N+++    K G+++ A  LF++M +RD VSW  M+  YA  G 
Sbjct: 240 VAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGE 299

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT-QETYLDSVATV 314
              A  LF EM E     +VI+ N +  G ++ G+    L     M + +E + D+   +
Sbjct: 300 IDIARGLFDEMPER----DVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLL 355

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
           I L A + +G    G  +H       +   E +  ALI MY++C  + +A  +F+   +K
Sbjct: 356 ITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDK 415

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           SI  WN+++ G       E +  LF EM +  V+P+ +T   +L  C     ++ G    
Sbjct: 416 SIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEG--LM 473

Query: 435 CYILRRAMFN--EHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
           C+ L R +      L  +  +V++  R+G V EAK   + M    ++V + +L++ 
Sbjct: 474 CFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSA 529


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 196/633 (30%), Positives = 313/633 (49%), Gaps = 73/633 (11%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF---LVENSNIRYPLPWNL 145
           ++A+ K++HA  I+ GL  +   + +LV F A  S + N  +   ++ N+       WN+
Sbjct: 66  SMAKMKEIHAQMISTGLISDGFALSRLVAFCA-ISEWRNLDYCDKILNNAANLNVFSWNM 124

Query: 146 LISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLKAC-GEMMDVDFGRVVHSCIDA 203
            I  YV       A+ +Y+ M  +     DN+TYP + K C G  +      ++   I  
Sbjct: 125 AIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQL 184

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             +  LFVHNA++ +    G++  AR+LFD+   RD VSW                    
Sbjct: 185 GFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSW-------------------- 224

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
                          N+I  G +R G      +L  +M       D V  +  + A + +
Sbjct: 225 ---------------NSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQL 269

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L LG+++H S           + NAL+ MY +CK++  A ILF+   +K++++W +M+
Sbjct: 270 ENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMV 329

Query: 384 SGYTHLDCAE-------------------------------ESAFLFREMFRSGVEPNYV 412
            GY      E                               E+  LF EM  S V P+ +
Sbjct: 330 IGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKI 389

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T+ + L  C+++  L  G   H Y+ +  +   ++ L  +LV+MYA+ G + +A  VF+ 
Sbjct: 390 TVVNCLSACSQLGALDVGIWMHHYVDKHNL-TMNVALGTALVDMYAKCGNIKKAIQVFEE 448

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  R+ +T+T++I G  + G+   A+  F EM    + PD +T + VLSAC H GLV +G
Sbjct: 449 MPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQG 508

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           +  F +MTS YGI P+L+H++C+VDL GRAG L +A+E+I  MP+ P + +W  L    +
Sbjct: 509 RDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSR 568

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           IH N  +GE AA KLLE  P + G YVL+ANMY     W++  KVR  M + GV K PGC
Sbjct: 569 IHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGC 628

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           + ++   +   F++ D S+ Q+++IY  L  LT
Sbjct: 629 SSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLT 661



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 123/275 (44%), Gaps = 9/275 (3%)

Query: 317 LGACSHVGALKLGKEIHGSAVR-GCYGE-YENVRNALITMYSRCKDLRHAYILFKMTAEK 374
           L AC+ +  +K   EIH   +  G   + +   R       S  ++L +   +    A  
Sbjct: 61  LEACTSMAKMK---EIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANL 117

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE-PNYVTIASILPLCARVANLQHGKEF 433
           ++ +WN  + GY   +    +  L+R M R G   P+  T   +  +CA  +      E 
Sbjct: 118 NVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
             ++++   F+  L + N+++ +    G++  A+ +FD    RD V++ S+I GY   G 
Sbjct: 178 LGHVIQLG-FDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGL 236

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A  L+ +M +  + PD VTM+ V+SA +    +  G+K  + +  + G+   +    
Sbjct: 237 ADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEM-GLNLTVPLAN 295

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            ++D+Y +   +  AK +   M    T   W T++
Sbjct: 296 ALMDMYIKCKNIEAAKILFENMT-KKTVVSWTTMV 329



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 5/195 (2%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A   F  ++ ++ + D +  +  + +  C ++ AL  G  +H       L  N  L   
Sbjct: 371 EALALFHEMQASSVAPDKI--TVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTA 428

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV  YA       A  + E    R  L W  +I      G    A+  + +M S  +  D
Sbjct: 429 LVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS--LFVHNALVSMYGKFGQVDVARRLF 232
             T+  VL AC     VD GR     + + +  S  L  ++ LV + G+ G ++ A  L 
Sbjct: 489 EITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELI 548

Query: 233 DKM-LERDAVSWNTM 246
             M  E DAV W  +
Sbjct: 549 RSMPFEPDAVVWGAL 563


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  315 bits (807), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 296/560 (52%), Gaps = 39/560 (6%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + W L+I+ Y + G   +A+ ++ ++       D FT  S+L AC E+     G+ +HS 
Sbjct: 214 VTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSW 273

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            I +     +FV   LV MY K   V+ +R++F+ ML  + +SW  +IS Y      +EA
Sbjct: 274 VIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEA 333

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF  M    V  N  T++++                                   L A
Sbjct: 334 IKLFCNMLHGHVTPNCFTFSSV-----------------------------------LKA 358

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +    +GK++HG  ++        V N+LI MY+R   +  A   F +  EK++I++
Sbjct: 359 CASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISY 418

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+          ++ES     E+  +GV  +  T A +L   A +  +  G++ H  I++
Sbjct: 419 NTAADANAKALDSDES--FNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVK 476

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              F  +L + N+L+ MY++ G    A  VF+ M  R+ +T+TS+I+G+   G    AL+
Sbjct: 477 SG-FGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALE 535

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           LF EM +  +KP+ VT +AVLSACSH GL+ E  K F  M   + I P++EH+ACMVDL 
Sbjct: 536 LFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLL 595

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
           GR+GLL +A E I  MP+   + +W T LG+C++HRNT +GE AA+K+LE  P +   Y+
Sbjct: 596 GRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYI 655

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++N+YA+ G WD +A +R  M+   + K  G +W++  N    F V DTS+ QA++IY 
Sbjct: 656 LLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYD 715

Query: 680 LLGGLTELMKDAGYVVKEEF 699
            L  L   +K+ GY+   +F
Sbjct: 716 ELDELALKIKNLGYIPNTDF 735



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 199/436 (45%), Gaps = 56/436 (12%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++  G L  A + F R+ ++  + D    +   ++  C +++  + GKQLH+  I  GL 
Sbjct: 223 YSQLGLLDDAVDLFCRLLVSEYTPDKF--TLTSLLSACVELEFFSLGKQLHSWVIRSGLA 280

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LV  YA  +   N+  +         + W  LIS YV+     EA+ ++  M
Sbjct: 281 SDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNM 340

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--------SCIDACHEWSLFVHNALVSM 218
               +  + FT+ SVLKAC  + D   G+ +H        S I+        V N+L++M
Sbjct: 341 LHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINC-------VGNSLINM 393

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y + G ++ AR+ F+ + E++ +S+NT   A A      E+F    E++  GV  +  T+
Sbjct: 394 YARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNH--EVEHTGVGASPFTY 451

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                 CL +G                             AC  +G +  G++IH   V+
Sbjct: 452 -----ACLLSG----------------------------AAC--IGTIVKGEQIHALIVK 476

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             +G    + NALI+MYS+C +   A  +F     +++ITW S++SG+     A ++  L
Sbjct: 477 SGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALEL 536

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHG-KEFHCYILRRAMFNEHLLLWNSLVEMY 457
           F EM   GV+PN VT  ++L  C+ V  +    K F+      ++ +  +  +  +V++ 
Sbjct: 537 FYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSI-SPRMEHYACMVDLL 595

Query: 458 ARSGKVPEAKSVFDLM 473
            RSG + EA    + M
Sbjct: 596 GRSGLLLEAIEFINSM 611



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/528 (22%), Positives = 222/528 (42%), Gaps = 50/528 (9%)

Query: 58  EAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVT 117
           +A +R+ +T  S    L   + ++  C +   L  GK LH   I  GL  + VL+  L+T
Sbjct: 26  KAISRLDLTTTS---PLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLIT 82

Query: 118 FYASFSLYNNACFLVEN--SNIRYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRR--IR 172
            Y+    + NA  +  N   + R  + W+ +IS +  +   + AL  +  M Q  R  I 
Sbjct: 83  LYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIY 142

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFG-QVDVAR 229
            + + + ++L++C   +    G  + + +      +  + V  AL+ M+ K G  +  AR
Sbjct: 143 PNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSAR 202

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +FDKM  ++ V+W  MI+ Y+  GL  +A  LF                          
Sbjct: 203 MVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFC------------------------- 237

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                     R+   E   D       L AC  +    LGK++H   +R        V  
Sbjct: 238 ----------RLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGC 287

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
            L+ MY++   + ++  +F      ++++W +++SGY      +E+  LF  M    V P
Sbjct: 288 TLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTP 347

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  T +S+L  CA + +   GK+ H   ++  +   +  + NSL+ MYARSG +  A+  
Sbjct: 348 NCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTIN-CVGNSLINMYARSGTMECARKA 406

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+++  ++ ++Y +         +   +     E+    +     T   +LS  +  G +
Sbjct: 407 FNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTI 464

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
           V+G+ Q   +    G    L     ++ +Y + G    A ++   M Y
Sbjct: 465 VKGE-QIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGY 511



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL 146
           +  + +G+Q+HA  +  G   N  +   L++ Y+       A  +  +   R  + W  +
Sbjct: 461 IGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSI 520

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE 206
           IS + + GF  +AL ++ +M    ++ +  TY +VL AC  +  +D      + +   H 
Sbjct: 521 ISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHS 580

Query: 207 WSLFVHN--ALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            S  + +   +V + G+ G +  A    + M  + DA+ W T + +
Sbjct: 581 ISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGS 626


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  315 bits (807), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 206/648 (31%), Positives = 325/648 (50%), Gaps = 44/648 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G+L   ++    +R +  + D    +F  I+     V  L  G+QLH+  + +GL 
Sbjct: 69  FASSGDLDTTWQLLGAMRRSTHAFDS--RTFGSILKGVAYVGKLKLGQQLHSVMLKVGLS 126

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           +N      L+  YA     ++   + ++   R  + WN L++ Y R G    A  V   M
Sbjct: 127 ENVFSGSALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCM 186

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF--VHNALVSMYGKFGQ 224
           +   +  D+ T   +L      M       +H C    H   LF  V NA ++ Y +   
Sbjct: 187 ELEGVEIDDGTVSPLLTLLDNAMFYKLTMQLH-CKIVKHGLELFNTVCNATITAYSECCS 245

Query: 225 VDVARRLFD-KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           +  A R+FD  +L RD V+WN+M+ AY        AF++F++MQ  G E +  T+  I  
Sbjct: 246 LQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGI-- 303

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                            +GACS       GK +HG  ++     
Sbjct: 304 ---------------------------------VGACSVQEHKTCGKCLHGLVIKRGLDN 330

Query: 344 YENVRNALITMYSRCKD--LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
              V NALI+MY R  D  +  A  +F     K   TWNS+L+GY  +  +E++  LF +
Sbjct: 331 SVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQ 390

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M    +E ++ T ++++  C+ +A LQ G++FH   L+   F+ +  + +SL+ MY++ G
Sbjct: 391 MRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKVG-FDTNSYVGSSLIFMYSKCG 449

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + +A+  F+  S+ + + + S+I GY   G+G +AL LF  M + ++K DH+T VAVL+
Sbjct: 450 IIEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDHITFVAVLT 509

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSH+GLV EG    E M S +GI P+ EH+AC +DLYGRAG L KA  ++  MP+ P +
Sbjct: 510 ACSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATALVETMPFEPDA 569

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
            +  TLLGAC+   +  +    A+ LLE  PE    YV+++ MY     W + A V   M
Sbjct: 570 MVLKTLLGACRFCGDIELASQIAKILLELEPEEHCTYVILSEMYGRFKMWGEKASVTRMM 629

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
           R+ GV+K+PG +W++  N    F  +D S+ Q +EIY LL  L E +K
Sbjct: 630 RERGVKKVPGWSWIEVKNNVHAFNAEDHSHPQCEEIYILLQQLNEGIK 677



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/479 (27%), Positives = 217/479 (45%), Gaps = 43/479 (8%)

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H  AI LG   +P     L+T YA  +  N+A  + +    R  + WN +IS +   G  
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNAL 215
                +   M+      D+ T+ S+LK    +  +  G+ +HS  +      ++F  +AL
Sbjct: 76  DTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSAL 135

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MY K G+VD    +F  M ER+ VSWNT++++Y+  G    AF +   M+ EGVE++ 
Sbjct: 136 LDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEID- 194

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
                        G    +L LL                       +    KL  ++H  
Sbjct: 195 ------------DGTVSPLLTLL----------------------DNAMFYKLTMQLHCK 220

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE-KSIITWNSMLSGYTHLDCAEE 394
            V+     +  V NA IT YS C  L+ A  +F      + ++TWNSML  Y   +  E+
Sbjct: 221 IVKHGLELFNTVCNATITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHE-KED 279

Query: 395 SAF-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
            AF +F +M   G EP+  T   I+  C+   +   GK  H  +++R + N  + + N+L
Sbjct: 280 LAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDNS-VPVSNAL 338

Query: 454 VEMYARSGK--VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           + MY R     + +A  +F  M  +D  T+ S++AGY   G    AL+LF +M    I+ 
Sbjct: 339 ISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEI 398

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           DH T  AV+ +CS    +  GQ QF  +    G        + ++ +Y + G++  A++
Sbjct: 399 DHYTFSAVIRSCSDLATLQLGQ-QFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARK 456



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+L+  YA+  ++  A  VFD M  RD V++ ++I+ +   G+     +L   M ++   
Sbjct: 32  NNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMRRSTHA 91

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
            D  T  ++L   ++ G +  GQ+    M  + G+   +   + ++D+Y + G ++    
Sbjct: 92  FDSRTFGSILKGVAYVGKLKLGQQLHSVMLKV-GLSENVFSGSALLDMYAKCGRVDDGYV 150

Query: 571 IITKMPYTPTSAMWATLLGA 590
           +   MP       W TL+ +
Sbjct: 151 VFQSMP-ERNYVSWNTLVAS 169


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 183/575 (31%), Positives = 295/575 (51%), Gaps = 62/575 (10%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-I 201
           W+ +I  Y        +   +  M+S  +  +   +PS+LKA   +        +H+C +
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 202 DACHEWSLFVHNALVSMYGKFGQ---------------VDVARRLFDKMLERDAVSWNTM 246
               +  L++ NAL++ Y KF                 +D  +++FD M  RD VSWNT+
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTV 197

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           I+ +A  G++ EA  +  EM + G                             +++    
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNG-----------------------------KLKPDSF 228

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
            L S+  +       HV   K GKEIHG AVR  +     + ++LI MY++C  L  +  
Sbjct: 229 TLSSILPIFA----EHVDVNK-GKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLR 283

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAF-----LFREMFRSGVEPNYVTIASILPLC 421
            F +   K  I+WNS+++G     C +   F      FR M +  V+P  V+ +S++P C
Sbjct: 284 AFYILPRKDAISWNSIIAG-----CVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPAC 338

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
           A +  L  G++ H  I+R   F+++  + +SLV+MYA+ G +  A+ VFD + +RD V +
Sbjct: 339 AHLTALSLGRQLHGCIVRLG-FDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAW 397

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
           T++I G  + G    A+ LFE M ++ ++P +V  +AVL+ACSH+GLV EG + F  M  
Sbjct: 398 TAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMER 457

Query: 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIG 600
            +GI P LEH+A + DL GRAG L +A + I+ M    PT ++W+ LL AC+ H++  + 
Sbjct: 458 DFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELA 517

Query: 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           E   +KLL    EN G YVL++N+Y+A   W   A++R  MR  G++K P C+W++ GN 
Sbjct: 518 EKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQ 577

Query: 661 FSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
              F+  D S+    +I   L  L E M+  GYV+
Sbjct: 578 VHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVI 612



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 188/397 (47%), Gaps = 55/397 (13%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASF---------------SLYNNACFLVENSNIRY 139
            LHAC + LGL+ +  +   L+  YA F               S  +    + +   +R 
Sbjct: 131 SLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRD 190

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
            + WN +I+ + ++G Y EAL + ++M ++ +++ D+FT  S+L    E +DV+ G+ +H
Sbjct: 191 VVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIH 250

Query: 199 S-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
              +    +  +F+ ++L+ MY K  +++ + R F  +  +DA+SWN++I+     G + 
Sbjct: 251 GYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFD 310

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                F  M +E V+   ++++++                                   +
Sbjct: 311 RGLGFFRRMLKENVKPMAVSFSSV-----------------------------------I 335

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+H+ AL LG+++HG  VR  + + E + ++L+ MY++C +++ A  +F    ++ ++
Sbjct: 336 PACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMV 395

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            W +++ G      A ++  LF  M   GV P YV   ++L  C+    +  G  +   +
Sbjct: 396 AWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSM 455

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
            R       L  + ++ ++  R+G++ EA   +D +S
Sbjct: 456 ERDFGIAPGLEHYAAVADLLGRAGRLEEA---YDFIS 489



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 15/206 (7%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS-NIRYPLP------WN 144
           +GK++H  A+  G + +  +   L+  YA        C  +E S    Y LP      WN
Sbjct: 245 KGKEIHGYAVRNGFDGDVFIGSSLIDMYAK-------CNRLECSLRAFYILPRKDAISWN 297

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DA 203
            +I+  V++G +   L  +++M    ++    ++ SV+ AC  +  +  GR +H CI   
Sbjct: 298 SIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRL 357

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             + + F+ ++LV MY K G + +AR +FD++ +RD V+W  +I   A  G   +A  LF
Sbjct: 358 GFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLF 417

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTG 289
             M E+GV    + +  +   C   G
Sbjct: 418 ENMLEDGVRPCYVAFMAVLTACSHAG 443



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 101/235 (42%), Gaps = 38/235 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+ +I  C  + AL+ G+QLH C + LG + N  +   LV  YA       A ++ +  
Sbjct: 330 SFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRI 389

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG- 194
           + R  + W  +I      G   +A+ +++ M    +R     + +VL AC     VD G 
Sbjct: 390 DKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGW 449

Query: 195 RVVHSC-IDACHEWSLFVHNALVSMYGKFGQ----------------------------- 224
           R  +S   D      L  + A+  + G+ G+                             
Sbjct: 450 RYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACR 509

Query: 225 ----VDVARRLFDKMLERDAV---SWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
               V++A ++ DK+L  D+    ++  M + Y++   WK+A +L + M+++G++
Sbjct: 510 AHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLK 564


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 186/565 (32%), Positives = 303/565 (53%), Gaps = 44/565 (7%)

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           P   +LL   Y RD     A+ V   M+ R +  D+ TY  ++K C     V  G+ VH 
Sbjct: 252 PETESLLNHCYRRD--LPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHR 309

Query: 200 CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I    +    F+ N L++MY KF  ++ A+ LFDKM ER+ VSW TMISAY++  L   
Sbjct: 310 HIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDR 369

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A +L   M  +GV  N+ T++++   C R  + K +                        
Sbjct: 370 AMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLKQL------------------------ 405

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
              H   +K+G E   S V         VR+ALI +YS+  +L  A  +F+       + 
Sbjct: 406 ---HSWIMKVGLE---SDVF--------VRSALIDVYSKMGELLEALKVFREMMTGDSVV 451

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WNS+++ +      +E+  L++ M R G   +  T+ S+L  C  ++ L+ G++ H ++L
Sbjct: 452 WNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVL 511

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   F++ L+L N+L++MY + G + +AK +F+ M+++D ++++++IAG    G    AL
Sbjct: 512 K---FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEAL 568

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LFE M     KP+H+T++ VL ACSH+GLV EG   F  M ++YGI P  EH+ CM+DL
Sbjct: 569 NLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDL 628

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRA  L+   ++I +M   P    W TLL AC+  +N  +  +AA+++L+  P+++G Y
Sbjct: 629 LGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAY 688

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+YA +  W+ +A+VR  M+  G+RK PGC+W++       F++ D S+ Q  EI 
Sbjct: 689 VLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEIN 748

Query: 679 PLLGGLTELMKDAGYVVKEEFCSEE 703
             L      +  AGYV    F  ++
Sbjct: 749 RQLNQFICRLAGAGYVPDTNFVLQD 773



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 203/483 (42%), Gaps = 77/483 (15%)

Query: 42  ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           E+L +   R +L  A      +       D +  +++ +I CC    A+ +GK++H    
Sbjct: 255 ESLLNHCYRRDLPSAMHVLDSMERRGVWADSI--TYSELIKCCLAHGAVREGKRVHRHIF 312

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
           + G      L   L+  Y  F+L   A  L +    R  + W  +IS Y        A+ 
Sbjct: 313 SNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMR 372

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYG 220
           +   M    +  + FT+ SVL+AC  + D+   + +HS I     E  +FV +AL+ +Y 
Sbjct: 373 LLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYS 429

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G++  A ++F +M+  D+V WN++I+A+A      EA  L+  M+  G   +  T  +
Sbjct: 430 KMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTS 489

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +                                   L AC+ +  L+LG++ H   ++  
Sbjct: 490 V-----------------------------------LRACTSLSLLELGRQAHVHVLK-- 512

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           + +   + NAL+ MY +C  L  A  +F   A+K +I+W++M++G      + E+  LF 
Sbjct: 513 FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFE 572

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M   G +PN++TI  +L  C+                   + NE    + S+  +Y   
Sbjct: 573 SMKVQGPKPNHITILGVLFACSHA----------------GLVNEGWYYFRSMNNLYGID 616

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
                   + DL+ R +++                  +KL  EMN    +PD VT   +L
Sbjct: 617 PGREHYGCMLDLLGRAEKLDDM---------------VKLIHEMN---CEPDVVTWRTLL 658

Query: 521 SAC 523
            AC
Sbjct: 659 DAC 661


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 187/592 (31%), Positives = 302/592 (51%), Gaps = 41/592 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS-LYNNACFLVEN 134
           SF +++ CC  +  L++   +HA  +  G  +N +L  KL+      +   + A  + + 
Sbjct: 31  SFNYLLNCCSSLPDLSR---IHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQ 87

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
              R    WN LI  Y   G   EAL +Y  M    +  DN+T+P V+++C  +  +  G
Sbjct: 88  MPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREG 147

Query: 195 RVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + VH + +    +  +FV ++LV+MY + G+      +F +M+ R               
Sbjct: 148 KEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVR--------------- 192

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                               N+++W  +  G ++   FK  L +   M    T  ++V  
Sbjct: 193 --------------------NIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTL 232

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           V  L AC+ +  L LGK IHG  ++       ++ NALI +Y +C ++  A  LF     
Sbjct: 233 VSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVV 292

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +++++WN+M++ Y   +    +  LFR M    V+ +Y+T+ S++  CA +  L  G+  
Sbjct: 293 QNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWM 352

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  + R+ +   ++ + N+L++MYA+ G +  A+ VF+ +  R  V++TS+I      G 
Sbjct: 353 HELVKRKGL-EINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGH 411

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  ALKLF  M    +KP+  T  AV +AC HSGLV EG+K FE M   Y I P +EH A
Sbjct: 412 GEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCA 471

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVDL GRAG L +A E I KMP  P  ++W  LLG+C+IH N  + E  AEKL    P+
Sbjct: 472 CMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQ 531

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
              +YVL++N+YA  G W+  A++R  M +  ++KIPG + V+    F  FL
Sbjct: 532 TVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVNRRFHTFL 583



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 9/201 (4%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           + A + F R++      D +  +   +I  C  + AL  G+ +H      GLE N  +  
Sbjct: 312 ANAVKLFRRMQAEKVDFDYI--TMVSVISACASLGALNTGRWMHELVKRKGLEINVSITN 369

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            L+  YA     + A  + E    R  + W  +I      G   +AL ++ +M+   ++ 
Sbjct: 370 ALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKP 429

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV---HNA-LVSMYGKFGQVDVAR 229
           ++FT+ +V  AC     V+ GR     +    ++S+     H A +V + G+ G +  A 
Sbjct: 430 NSFTFAAVFTACRHSGLVEEGRKHFESM--MRDYSIMPGVEHCACMVDLLGRAGSLMEAY 487

Query: 230 RLFDKM-LERDAVSWNTMISA 249
              DKM +E D   W  ++ +
Sbjct: 488 EFIDKMPVEPDVSVWGALLGS 508


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  315 bits (806), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 196/584 (33%), Positives = 310/584 (53%), Gaps = 54/584 (9%)

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
           +L + S+     P N +I+  VR G    AL V+  M+++     N     + K    MM
Sbjct: 51  YLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMM 110

Query: 190 DVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +       H   D   E   F +N ++S Y +    + A+  FD+M  +DA SWNTMI+ 
Sbjct: 111 EA------HQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITG 164

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           YA +G  ++A +LF  M E+    N ++WN +  G +  G+ +           + ++  
Sbjct: 165 YARRGEMEKARELFYSMMEK----NEVSWNAMISGYIECGDLE-----------KASHFF 209

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
            VA V G+ A +                            A+IT Y + K +  A  +FK
Sbjct: 210 KVAPVRGVVAWT----------------------------AMITGYMKAKKVELAEAMFK 241

Query: 370 -MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
            MT  K+++TWN+M+SGY      E+   LFR M   G+ PN   ++S L  C+ ++ LQ
Sbjct: 242 DMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQ 301

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G++ H  + +  + N+   L  SL+ MY + G++ +A  +F++M ++D V + ++I+GY
Sbjct: 302 LGRQIHQIVSKSTLCNDVTAL-TSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGY 360

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G    AL LF EM  N+I+PD +T VAVL AC+H+GLV  G   FE M   Y + PQ
Sbjct: 361 AQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQ 420

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
            +H+ CMVDL GRAG L +A ++I  MP+ P +A++ TLLGAC++H+N  + E+AAEKLL
Sbjct: 421 PDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLL 480

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           +   +N+  YV +AN+YA+   W+ +A+VR  M++  V K+PG +W++  N    F   D
Sbjct: 481 QLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSD 540

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
             + +   I+  L  L + MK AGY  + EF     EEE  E++
Sbjct: 541 RIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKL 584



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 3/169 (1%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C ++ AL  G+Q+H       L  +   +  L++ Y       +A  L E    +  + W
Sbjct: 294 CSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAW 353

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-- 201
           N +IS Y + G   +ALC++++M   +IR D  T+ +VL AC     V+ G      +  
Sbjct: 354 NAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVR 413

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISA 249
           D   E     +  +V + G+ G+++ A +L   M  R  A  + T++ A
Sbjct: 414 DYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGA 462


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  315 bits (806), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 190/633 (30%), Positives = 319/633 (50%), Gaps = 54/633 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L ++A  G+ +K    F ++    +  ++   +   ++ CC ++     G+ +H   I  
Sbjct: 234 LNEYARDGDYAKVMLVFDKL--VESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKR 291

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE + VL   L+  Y+      +A  +    +    +  +L+IS + R     EA  ++
Sbjct: 292 GLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIF 351

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            QM    ++ + +T+  +        DV+  R +H+  + +    +  V +A+V MY K 
Sbjct: 352 MQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKT 411

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G V  A   FD M   D  SWNT++S + S    +   ++F E+  EGV  N  T+  I 
Sbjct: 412 GAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGI- 470

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCY 341
                                             L  C+ +  L+ G ++H   ++ G  
Sbjct: 471 ----------------------------------LRCCTSLMDLRFGCQVHACVLKSGFQ 496

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
           G+Y+ V   L+ MY +     +A ++F    E+ + +W  ++S Y   D  E++   FR 
Sbjct: 497 GDYD-VSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRS 555

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS------LVE 455
           M R    PN  T+A+ L +C+ +A L  G + H Y ++          WNS      LV+
Sbjct: 556 MLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSG--------WNSSVVSSALVD 607

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MY + G + +A+ +FD     D V + ++I GY   G G  AL+ F+EM      PD +T
Sbjct: 608 MYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEIT 667

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            V VLSACSH+GL+ EG++ F+ ++S+YGI P LEH+ACMVD+  +AG L +A+ +I +M
Sbjct: 668 FVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEM 727

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P TP +++W T+LGAC++H N  I E AAEKL E++P++    +L++N+YA    W+ +A
Sbjct: 728 PLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVA 787

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           K+R+ + D GV+K PGC+W++       FL  D
Sbjct: 788 KLRSMLVDRGVKKEPGCSWIEINGKLHVFLSQD 820



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 121/515 (23%), Positives = 220/515 (42%), Gaps = 42/515 (8%)

Query: 62  RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS 121
           R+R+ A      L S+A  +  C   +AL +GK LHA  +  G   +  L   L+  Y  
Sbjct: 52  RLRLRAEE----LRSYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCK 107

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
                +A  + +    R  + W  ++S     G    AL ++ +M    +  + F   + 
Sbjct: 108 CGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAA 167

Query: 182 LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           LKAC    D+ F   VH+  +     +  +V ++LV  Y   G+VDVA R       R  
Sbjct: 168 LKACTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSD 227

Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
           VSWN +++ YA  G + +   +F ++ E G E++  T  T+                   
Sbjct: 228 VSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTV------------------- 268

Query: 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
                           L  C  +G  K G+ +HG  ++        + N LI MYS+C  
Sbjct: 269 ----------------LKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLS 312

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
              AY +F    E  ++  + M+S +   D A E+  +F +M   GV+PN  T   +  +
Sbjct: 313 AEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIV 372

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
            +R  ++   +  H +I++   F+    + +++V MY ++G V +A   FDLM   D  +
Sbjct: 373 ASRTGDVNLCRSIHAHIVKSG-FSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIAS 431

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           + +L++G+         L++F+E+    +  +  T V +L  C+ S + +    Q     
Sbjct: 432 WNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCT-SLMDLRFGCQVHACV 490

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
              G     +    ++D+Y +AG    A+ +  ++
Sbjct: 491 LKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRL 525


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  315 bits (806), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 170/518 (32%), Positives = 285/518 (55%), Gaps = 38/518 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y S++ AC +  ++   R +H+ +  +C     F+ N+L+ MY K G V  AR +FDKM 
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMP 122

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            RD VSW  +I+ YA   +  EA  L  +M       N  T+ ++               
Sbjct: 123 SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSL--------------- 167

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                            +   GAC   G   +G+++H  AV+  + E   V +AL+ MY+
Sbjct: 168 -----------------LKATGAC---GGCSIGEQMHALAVKYNWDEDVYVGSALLDMYA 207

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           RC+ +  A ++F     K+ ++WN++++G+      E +   F EM R+G    + T +S
Sbjct: 208 RCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSS 267

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +    AR+  L+ G+  H ++++         + N+++ MYA+SG + +A+ VFD M +R
Sbjct: 268 MFSAFARIGALEQGRWVHAHLIKSGQ-KLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKR 326

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D VT+ +++      G G+ A+  FEE+ K  I+ + +T ++VL+ACSH GLV EG+  F
Sbjct: 327 DLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYF 386

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           + M   Y + P+++H+   VDL GRAGLL +A   + KMP  PT+A+W  LLGAC++H+N
Sbjct: 387 DMMKD-YNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKN 445

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             +G++AA+ + E  P+++G  VL+ N+YA+TG W+  A+VR  M+  GV+K P C+WV 
Sbjct: 446 AKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQ 505

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             N    F+ DD ++ ++ +IY +   +   +K AGYV
Sbjct: 506 IENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYV 543



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 175/389 (44%), Gaps = 39/389 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           II  C + K LA  + +HA      L  +  L+  L+  Y      ++A  + +    R 
Sbjct: 66  IIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRD 125

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  LI+ Y ++   AEA+ +   M   R R + FT+ S+LKA G       G  +H+
Sbjct: 126 VVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHA 185

Query: 200 CIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            +   + W   ++V +AL+ MY +  Q+D+A  +FD+++ ++ VSWN +I+ +A K   +
Sbjct: 186 -LAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGE 244

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                F EMQ  G      T++++                                    
Sbjct: 245 TTLMKFAEMQRNGFGATHFTYSSM-----------------------------------F 269

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            A + +GAL+ G+ +H   ++        V N ++ MY++   +  A  +F    ++ ++
Sbjct: 270 SAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLV 329

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           TWN+ML+        +E+   F E+ + G++ N +T  S+L  C+    ++ GK +   +
Sbjct: 330 TWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-M 388

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           ++       +  + S V++  R+G + EA
Sbjct: 389 MKDYNVQPEIDHYVSFVDLLGRAGLLKEA 417



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 143/312 (45%), Gaps = 41/312 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++   G     + G+Q+HA A+    +++  +   L+  YA     + A  + +  
Sbjct: 163 TFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 222

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN LI+ + R       L  + +MQ       +FTY S+  A   +  ++ GR
Sbjct: 223 VSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGR 282

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  I +  + + FV N ++ MY K G +  AR++FD+M +RD V+WNTM++A A  G
Sbjct: 283 WVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYG 342

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L KEA   F E+++ G+++N IT+ ++                                 
Sbjct: 343 LGKEAVAHFEEIRKCGIQLNQITFLSV--------------------------------- 369

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN--ALITMYSRCKDLRHAYI-LFKMT 371
             L ACSH G +K GK  H   +   Y     + +  + + +  R   L+ A I +FKM 
Sbjct: 370 --LTACSHGGLVKEGK--HYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMP 425

Query: 372 AEKSIITWNSML 383
            E +   W ++L
Sbjct: 426 MEPTAAVWGALL 437


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  315 bits (806), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 187/619 (30%), Positives = 310/619 (50%), Gaps = 64/619 (10%)

Query: 64  RITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS 123
           ++ A+  ++   +   ++ CC ++     G+ +HA  I  GLE + VL   LV  Y+   
Sbjct: 242 KLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSR-- 299

Query: 124 LYNNACFLVENSN---IRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
                C   E +    IR   P     + +IS + R     EAL ++ +M    ++ +++
Sbjct: 300 -----CLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHY 354

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKM 235
            +  +        D +  R VH+ I       L  V +A+++MY K G V  A   FD +
Sbjct: 355 IFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLI 414

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
            E D  SWNT++SA+ S    ++  ++F +M  EG   N  T+ ++              
Sbjct: 415 HEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSV-------------- 460

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                                L  C+ +  L+ G ++H   ++       +V   L+ MY
Sbjct: 461 ---------------------LRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMY 499

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++      A ++F+   E+   +W  ++SGY   + AE+    FR M R  + P+  T+A
Sbjct: 500 AQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLA 559

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS------LVEMYARSGKVPEAKSV 469
             L +C+ +A+L  G + H + ++          WNS      LV+MY + G + +A+ +
Sbjct: 560 VSLSVCSDMASLGSGLQLHSWAIKSG--------WNSSVVSGALVDMYVKCGNIADAEML 611

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F     RD+V + ++I GY   G G  AL  F++M     +PD +T V VLSACSH+GL+
Sbjct: 612 FHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLL 671

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG+K F+ ++SIYGI P +EH+ACMVD+  +AG L +A+ +I +MP  P S++W T+LG
Sbjct: 672 NEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWRTILG 731

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC+IHRN  I E AAE+L E  P ++   +L++N+YA  G W  + +VR  + D GV+K 
Sbjct: 732 ACRIHRNIEIAERAAERLFELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKE 791

Query: 650 PGCAWVDAGNVFSPFLVDD 668
           PGC+W++       FL  D
Sbjct: 792 PGCSWIEINGQIHMFLSQD 810



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 127/541 (23%), Positives = 223/541 (41%), Gaps = 70/541 (12%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G  S    A  R+   A + ++ L + A  +  C   + L +G++LHA  +   L  +  
Sbjct: 29  GARSSPSHANARLHTVAHAEELRLHAAA--LQDCAVRRTLRRGQELHARLLRSALHPDTF 86

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L+  L+  Y       +A  + +    R  + W  +IS +   G   +AL ++ +M    
Sbjct: 87  LLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEG 146

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHNALVSMYGKFGQVDVAR 229
           I  + FT  SVLKAC       F   VH  +   +     +V ++LV  Y   G++D A 
Sbjct: 147 IAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAE 206

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +   + ER  VSWN +++ YA  G ++    +  ++   G E++  T  T+   C+  G
Sbjct: 207 TVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELG 266

Query: 290 NFK----------------------GVLELLSR-MRTQETY------------------- 307
             K                       ++E+ SR +  +E Y                   
Sbjct: 267 LAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMIS 326

Query: 308 -----------LDSVATVIGLG-------------ACSHVGALKLGKEIHGSAVRGCYGE 343
                      LD    + G+G               S  G   L + +H   V+  +  
Sbjct: 327 CFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAM 386

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
            + V +A++ MY +   ++ A + F +  E    +WN++LS +      E+   +F++M 
Sbjct: 387 LKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMA 446

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
             G   N  T  S+L  C  + NL+ G + H  IL+  + N+   +   LV+MYA+SG  
Sbjct: 447 CEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQND-TDVSRMLVDMYAQSGCF 505

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
             A  VF+ +  RD  ++T +++GY    E    ++ F  M +  I+P   T+   LS C
Sbjct: 506 TSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVC 565

Query: 524 S 524
           S
Sbjct: 566 S 566



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           A+ L  CA    L+ G+E H  +LR A+  +  LL +SL+ MY + G++ +A+ VFD M 
Sbjct: 54  AAALQDCAVRRTLRRGQELHARLLRSALHPDTFLL-DSLLNMYCKCGRLVDARRVFDGMP 112

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC---SHSGLVVE 531
            RD V +T++I+ +   G+   AL +F  MN+  I P+  T+ +VL AC   SHS    +
Sbjct: 113 HRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQ 172

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
              Q  ++  +   +      + +V+ Y   G L+ A+ ++  +P   +   W  LL   
Sbjct: 173 VHGQVVKLNGLDDPYVG----SSLVEAYTSCGELDAAETVLLGLP-ERSDVSWNALLNGY 227

Query: 592 QIHRNTGIGEWAAEKLLETRPENSGY 617
             H +        EKL+ +  E S Y
Sbjct: 228 ARHGDYRRVMIIIEKLVASGDEISKY 253


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 200/647 (30%), Positives = 322/647 (49%), Gaps = 61/647 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A ++  CG       G  +H   I  GLE    L   LVTFY       +A  L E  
Sbjct: 227 TYASVVNACGSSGEEKYGAMVHGRIIKAGLEATN-LWNSLVTFYGKCGNLQHASQLFERI 285

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR--IRGDNFTYPSVLKACGEMMDVDF 193
           + +  + WN +I+   + G    AL ++++M      ++ +  T+ S+L A   +  +  
Sbjct: 286 SRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRC 345

Query: 194 GRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR +H+ I     E    + N+L++ Y K  +V  AR +F+++L RD +SWN+M++ Y  
Sbjct: 346 GREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQ 405

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                                     N   G C          ++  RM       DS +
Sbjct: 406 --------------------------NEQQGRCF---------DIFKRMMLSGIEPDSHS 430

Query: 313 TVIGLGACSHVGA----LKLGKEIHGSAVRGCY--GEYENVRNALITMYSRCKDLRHAYI 366
             I   A S   +     + GKEIHG  +R     G   +V NA++ MY++   +  A  
Sbjct: 431 LTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEK 490

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           +FK    +   +WN+M+ GY+     E+   +F ++ + G   ++V+++ +L  C R+ +
Sbjct: 491 IFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVS 550

Query: 427 LQHGKEFHCYILRRAMFNEH--------LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
           LQ GK+FH  + +  +FN          L + N+L+ MY++ G + +A  VF  M R+D 
Sbjct: 551 LQLGKQFHAVVAK--LFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDV 608

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
            ++T++I G    G    AL+LFE M  + IKP+ VT +A+L AC+H GLV EG   F+ 
Sbjct: 609 FSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDS 668

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT------KMPYTPTSAMWATLLGACQ 592
           M + YG+ P +EH+ACM+DL+GR+G  ++AK ++       K  +     +W  LLGAC 
Sbjct: 669 MYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACH 728

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
             +   +G  AA K+LE  PE+   Y+L+AN+YA++G W+   KVR  MRD G+RK  GC
Sbjct: 729 ASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGC 788

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           +W+D GN    F+  D  + Q +EIY  L  L    +  GYV   E 
Sbjct: 789 SWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTEL 835



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 147/565 (26%), Positives = 262/565 (46%), Gaps = 64/565 (11%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           GN ++AF  F ++       +    S A ++        +   +QLH  +I  G   +  
Sbjct: 100 GNFAQAFGLFQKMMGEGLQPNGF--SLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSG 157

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRY--PLPWNLLISLYVRDGFYAEALCVYKQMQS 168
           +    +T Y+   +  +A  + + +++     L WN +I+ Y+  G + E L ++ +M S
Sbjct: 158 IRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVS 217

Query: 169 RRIRGDN-FTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDV 227
             +      TY SV+ ACG   +  +G +VH  I      +  + N+LV+ YGK G +  
Sbjct: 218 VGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQH 277

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ--EEGVEVNVITWNTIAGGC 285
           A +LF+++  +D VSWN MI+A   +G  + A  LF  M   E  V+ N +T+       
Sbjct: 278 ASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTF------- 330

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                    L LLS                   A S + AL+ G+EIH    R       
Sbjct: 331 ---------LSLLS-------------------AVSGLSALRCGREIHAHIFRLSLEVDT 362

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           ++ N+LIT YS+C+++  A  +F+    + II+WNSML+GY   +       +F+ M  S
Sbjct: 363 SITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLS 422

Query: 406 GVEPNYVTIASILPLCARVAN----LQHGKEFHCYILRRAMFNE-HLLLWNSLVEMYARS 460
           G+EP+  ++  I    +R ++     + GKE H YILRR       L + N++++MYA+ 
Sbjct: 423 GIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKF 482

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
            ++ +A+ +F  M  RD  ++ +++ GY    +    L +F ++ K     DHV++  +L
Sbjct: 483 NRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILL 542

Query: 521 SACSHSGLVVEGQ--KQFERMTSIYGIF-----PQLEHF----ACMVDLYGRAGLLNKAK 569
           ++C   G +V  Q  KQF  + +   +F     P  +        ++ +Y + G +  A 
Sbjct: 543 TSC---GRLVSLQLGKQFHAVVA--KLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAA 597

Query: 570 EIITKMPYTPTSAMWATLLGACQIH 594
           ++  KM      + W  ++  C  H
Sbjct: 598 QVFLKMERKDVFS-WTAMITGCAHH 621



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 144/306 (47%), Gaps = 42/306 (13%)

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++  A++LFD    RD +SW+ +I+AY+                                
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYS-------------------------------- 97

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
              R GNF     L  +M  +    +  +    L      G + L +++HG ++R  +G 
Sbjct: 98  ---RCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGL 154

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFRE 401
              +R A ITMYSRC  L  A  +F  T+     I+ WNS+++ Y    C  E   LF +
Sbjct: 155 DSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCK 214

Query: 402 MFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           M   G V P  +T AS++  C      ++G   H  I++  +  E   LWNSLV  Y + 
Sbjct: 215 MVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGL--EATNLWNSLVTFYGKC 272

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ--IKPDHVTMVA 518
           G +  A  +F+ +SR+D V++ ++IA    +GEG  AL LF  M K +  ++P+ VT ++
Sbjct: 273 GNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLS 332

Query: 519 VLSACS 524
           +LSA S
Sbjct: 333 LLSAVS 338



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 120/258 (46%), Gaps = 13/258 (5%)

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           L+ A  LF     + +I+W+++++ Y+      ++  LF++M   G++PN  ++AS+L +
Sbjct: 71  LKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKV 130

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS--RRDE 478
                 +   ++ H + +R   F     +  + + MY+R G + +A+ VFD  S    D 
Sbjct: 131 SCSTGEIGLCRQLHGWSIRTG-FGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDI 189

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
           + + S+IA Y   G     L+LF +M +   + P  +T  +V++AC  SG    G     
Sbjct: 190 LLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHG 249

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
           R+  I         +  +V  YG+ G L  A ++  ++      + W  ++ A   +   
Sbjct: 250 RI--IKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVS-WNAMIAA---NEQR 303

Query: 598 GIGEWAA---EKLLETRP 612
           G GE A     ++L+  P
Sbjct: 304 GEGENALGLFRRMLKVEP 321


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 186/620 (30%), Positives = 321/620 (51%), Gaps = 47/620 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA +   CG +     G++ H   I +GLE N  +V  L+  YA   L  +A  +  + 
Sbjct: 140 TFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDI 199

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE-MMDVD-- 192
                + +  ++    +     EA  +++ M  + IR D+ +  S+L  C +   DV   
Sbjct: 200 PEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPC 259

Query: 193 -------FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
                   G+ +H+  +    E  L + N+L+ MY K G +D A ++F  +     VSWN
Sbjct: 260 HGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWN 319

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVE------VNVIT--------------------- 277
            MI+ Y ++   ++A +    MQ +G E      +N++T                     
Sbjct: 320 IMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPCP 379

Query: 278 ----WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
               WN I  G  +  + +  +EL  +M+ Q  + D     + L +C+ +G L+ GKE+H
Sbjct: 380 SLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVH 439

Query: 334 GSAVRGCYGEYENV--RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
            ++ +  +G Y++V   ++LI +YS+C  +  +  +F    E  ++ WNSML+G++    
Sbjct: 440 AASQK--FGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSL 497

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
            +++   F++M + G  P+  + A+++  CA++++L  G++FH  I++    ++ + + +
Sbjct: 498 GQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDD-IFVGS 556

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL+EMY + G V  A+  FD+M  R+ VT+  +I GY   G+G  AL L+ +M  +  KP
Sbjct: 557 SLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKP 616

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D +T VAVL+ACSHS LV EG + F  M   YG+ P++ H+ C++D   RAG  N+ + I
Sbjct: 617 DDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVI 676

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           +  MP    + +W  +L +C+IH N  + + AAE+L    P+NS  YVL+ANMY++ G W
Sbjct: 677 LDAMPCKDDAVVWEVVLSSCRIHANLSLAKRAAEELYRLDPQNSASYVLLANMYSSLGKW 736

Query: 632 DKLAKVRTCMRDLGVRKIPG 651
           D    VR  M    VRK PG
Sbjct: 737 DDAHVVRDLMSHNQVRKDPG 756



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 127/551 (23%), Positives = 235/551 (42%), Gaps = 95/551 (17%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN- 134
           + A+++  C   KA   GK +HA    L L  +  L    +  Y+      +AC + +N 
Sbjct: 8   NLANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNI 67

Query: 135 ------------------SNIRYP------------LPWNLLISLYVRDGFYAEALCVYK 164
                              N++Y             +  N LIS  VR G+  +AL  Y 
Sbjct: 68  PHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYD 127

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
            +    +   + T+ +V  ACG ++D D GR  H   I    E +++V NAL+ MY K G
Sbjct: 128 SVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCG 187

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
               A R+F  + E + V++ TM+   A     KEA +LF  M  +G+ V+ ++ +++ G
Sbjct: 188 LNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLG 247

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
            C      KG  +                    +G C  +     GK++H  +V+  +  
Sbjct: 248 VCA-----KGERD--------------------VGPCHGISTNAQGKQMHTLSVKLGFER 282

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             ++ N+L+ MY++  D+  A  +F      S+++WN M++GY +   +E++A   + M 
Sbjct: 283 DLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQ 342

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
             G EP+ VT  ++L  C +                                    SG V
Sbjct: 343 SDGYEPDDVTYINMLTACVK------------------------------------SGDV 366

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
              + +FD M      ++ ++++GY    + R A++LF +M      PD  T+  +LS+C
Sbjct: 367 RTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSC 426

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           +  G  +E  K+    +  +G +  +   + ++++Y + G +  +K + +K+P       
Sbjct: 427 AELGF-LEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDV-VC 484

Query: 584 WATLLGACQIH 594
           W ++L    I+
Sbjct: 485 WNSMLAGFSIN 495



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 35/456 (7%)

Query: 194 GRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G+VVH+ +     +S  F+ N  + +Y K   +  A  +FD +  ++  SWN +++AY  
Sbjct: 25  GKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCK 84

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
               + A +LF++M +     N ++ NT+    +R G  +  L+    +         + 
Sbjct: 85  ARNLQYACRLFLQMPQR----NTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHIT 140

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
                 AC  +     G+  HG  ++        V NAL+ MY++C     A  +F+   
Sbjct: 141 FATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIP 200

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR--------- 423
           E + +T+ +M+ G    +  +E+A LFR M R G+  + V+++S+L +CA+         
Sbjct: 201 EPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCH 260

Query: 424 -VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            ++    GK+ H   ++   F   L L NSL++MYA+ G +  A+ VF  ++R   V++ 
Sbjct: 261 GISTNAQGKQMHTLSVKLG-FERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWN 319

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
            +IAGYG +     A +  + M  +  +PD VT + +L+AC  SG V  G++ F+ M   
Sbjct: 320 IMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPC- 378

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYT---PTSAMWATLLGACQIHRNTGI 599
               P L  +  ++  Y +     +A E+  KM +    P     A +L +C       +
Sbjct: 379 ----PSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSC-----AEL 429

Query: 600 GEWAAEKLLETRPENSGYY--VLIA----NMYAATG 629
           G   A K +    +  G+Y  V +A    N+Y+  G
Sbjct: 430 GFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCG 465


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 188/646 (29%), Positives = 317/646 (49%), Gaps = 68/646 (10%)

Query: 56  AFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           +F  +  +R   A+    LD+F    ++  C +  +   G++LH  A   G   +  +  
Sbjct: 71  SFNCYLHMRSNDAA---ALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCN 127

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            L+  Y       +A  + +    R  + W  ++  YVR   + EAL + ++MQ   ++ 
Sbjct: 128 ALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKL 187

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI-----DACHEWSLFVHNALVSMYGKFGQVDVA 228
                 S++   G ++D+  GR VH  I     D   E S+    AL+ MY K G +  A
Sbjct: 188 SGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTT--ALIDMYCKGGCLASA 245

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           +RLFD++ +R                                   +V++W  +  GC+R+
Sbjct: 246 QRLFDRLSKR-----------------------------------SVVSWTVMIAGCIRS 270

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                  +  +RM  ++ + + +  +  +  C  VG L LGK  H   +R  +G    + 
Sbjct: 271 CRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALV 330

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
            ALI MY +C  + +A  LF    +K +  W+ ++S Y H+ C ++   LF EM  + V+
Sbjct: 331 TALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVK 390

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           PN VT+ S+L LCA    L  GK  H YI R  +    ++L  +L+ MYA+ G V  A+S
Sbjct: 391 PNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGL-EVDVILETALINMYAKCGDVTIARS 449

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           +F+   +RD   + +++AG+ + G G+ AL+LF EM  + ++P+ +T V++  ACSHSGL
Sbjct: 450 LFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGL 509

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
                               +EH+ C+VDL GRAG L++A  II  MP  P + +W  LL
Sbjct: 510 --------------------MEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALL 549

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
            AC++H+N  +GE AA K+LE  P+N GY VL +N+YA+   W+ +  VR  M   G++K
Sbjct: 550 AACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKK 609

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            PG +W++       F   D +  Q  ++Y ++  +   ++++GY 
Sbjct: 610 EPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYT 655


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  314 bits (805), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 188/582 (32%), Positives = 299/582 (51%), Gaps = 66/582 (11%)

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYP 179
           ++F L++  C        R  + WN +IS YV +G     L +YKQM    I  D  T  
Sbjct: 203 SAFELFDKLC-------DRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 255

Query: 180 SVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER 238
           SVL  C     +  G+ VHS  I +  E  +   N L+ MY K G +D A R        
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALR-------- 307

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
                                  +F +M E     NV++W ++  G  R G   G ++LL
Sbjct: 308 -----------------------VFEKMGER----NVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
            +M  +   LD VA    L AC+  G+L  GK++H             V NAL+ MY++C
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC 400

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
             +  A  +F     K II+WN+M+                       ++P+  T+A +L
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACVL 439

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
           P CA ++ L+ GKE H YILR   ++    + N+LV++Y + G +  A+ +FD++  +D 
Sbjct: 440 PACASLSALERGKEIHGYILRNG-YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           V++T +IAGYG+ G G  A+  F EM    I+PD V+ +++L ACSHSGL+ +G + F  
Sbjct: 499 VSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYI 558

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
           M + + I P+LEH+ACMVDL  R G L+KA E +  +P  P + +W  LL  C+ + +  
Sbjct: 559 MKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIE 618

Query: 599 IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
           + E  AE++ E  PEN+GYYVL+AN+YA    W+++ ++R  +   G+RK PGC+W++  
Sbjct: 619 LAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678

Query: 659 NVFSPFLV-DDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
              + F+  +++S+  ++ I  LL  +   MK+ G+  K ++
Sbjct: 679 GKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKY 720



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/461 (29%), Positives = 219/461 (47%), Gaps = 62/461 (13%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL----VSMYGKFGQVDVARRLF 232
           TY SVL+ C  +     G+ VHS I +    S+ V  AL    VS Y   G +   RR+F
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSN---SVGVDGALGLKLVSFYATCGDLKEGRRVF 157

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE----------------VNVI 276
           D M +++   WN M+S YA  G +KE+  LF  M E+G+E                 +VI
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           +WN++  G +  G  +  L +  +M      +D    +  L  C++ G L LGK +H  A
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  +    N  N L+ MYS+C DL  A  +F+   E+++++W SM++GYT    ++ + 
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAI 337

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            L ++M + GV+ + V I SIL  CAR  +L +GK+ H YI    M   +L + N+L++M
Sbjct: 338 KLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM-ESNLFVCNALMDM 396

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ G +  A SVF  M  +D +++ ++I                      ++KPD  TM
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTM 435

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGI-----FPQLEHFA-CMVDLYGRAGLLNKAKE 570
             VL AC+            ER   I+G      +    H A  +VDLY + G+L  A+ 
Sbjct: 436 ACVLPACA-------SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 488

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +   +P +     W  ++    +H   G G  A     E R
Sbjct: 489 LFDMIP-SKDLVSWTVMIAGYGMH---GYGNEAIATFNEMR 525



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 194/439 (44%), Gaps = 64/439 (14%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           DV L +   ++  C     L+ GK +H+ AI    E+       L+  Y+     + A  
Sbjct: 248 DVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALR 307

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           + E    R  + W  +I+ Y RDG    A+ + +QM+   ++ D     S+L AC     
Sbjct: 308 VFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGS 367

Query: 191 VDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +D G+ VH  I A + E +LFV NAL+ MY K G ++ A  +F  M+ +D +SWNTMI  
Sbjct: 368 LDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG- 426

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
                                                         EL    RT    L 
Sbjct: 427 ----------------------------------------------ELKPDSRTMACVLP 440

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           +         C+ + AL+ GKEIHG  +R  Y    +V NAL+ +Y +C  L  A +LF 
Sbjct: 441 A---------CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD 491

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
           M   K +++W  M++GY       E+   F EM  +G+EP+ V+  SIL  C+    L+ 
Sbjct: 492 MIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQ 551

Query: 430 GKEFHCYILRRAMFNE-HLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
           G  F  YI++     E  L  +  +V++ +R+G + +A    + +    D   + +L+ G
Sbjct: 552 GWRFF-YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCG 610

Query: 488 ----YGIQGEGRVALKLFE 502
               + I+   +VA ++FE
Sbjct: 611 CRNYHDIELAEKVAERVFE 629


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  314 bits (805), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/523 (32%), Positives = 292/523 (55%), Gaps = 38/523 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y + + AC +  +++  R VH+ + +       F+ N+L+ +Y K G V  AR++FD+M 
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            +D VSW ++I+ YA   + +EA  L   M +   + N  T+ ++               
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASL--------------- 158

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
               ++    + DS                 +G++IH  AV+  + E   V +AL+ MY+
Sbjct: 159 ----LKAAGAHADS----------------GIGRQIHALAVKCDWHEDVYVGSALLDMYA 198

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           RC  +  A  +F     K+ ++WN+++SG+      E +   F EM R+G E  + T +S
Sbjct: 199 RCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSS 258

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +    AR+  L+ GK  H ++++           N+L++MYA+SG + +A+ VFD +  +
Sbjct: 259 VFSSIARLGALEQGKWVHAHMIKSRQ-KMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDK 317

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D VT+ +++  +   G G+ A+  FEEM K+ I  + VT + +L+ACSH GLV EG++ F
Sbjct: 318 DLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYF 377

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           E M   Y + P+++HF  +V L GRAGLLN A   I KMP  PT+A+W  LL AC++H+N
Sbjct: 378 EMMKE-YDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKN 436

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             +G++AA+ + E  P++SG  VL+ N+YA+TG WD  A+VR  M+  GV+K P C+WV+
Sbjct: 437 AKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVE 496

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
             N    F+ +D ++ +A+EIY + G +++ ++  GYV   ++
Sbjct: 497 MENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDY 539



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 157/356 (44%), Gaps = 38/356 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
            I  C + K L   +++HA   +     +  L   L+  Y        A  + +    + 
Sbjct: 57  FITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKD 116

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  LI+ Y ++    EA+ +   M   R + + FT+ S+LKA G   D   GR +H+
Sbjct: 117 MVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHA 176

Query: 200 CIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
               C +W   ++V +AL+ MY + G +D+A  +FDK+  ++ VSWN +IS +A KG  +
Sbjct: 177 LAVKC-DWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGE 235

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
            A   F EM   G E    T++++                                    
Sbjct: 236 TALMTFAEMLRNGFEATHFTYSSV-----------------------------------F 260

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            + + +GAL+ GK +H   ++          N L+ MY++   +  A  +F    +K ++
Sbjct: 261 SSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLV 320

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           TWN+ML+ +      +E+   F EM +SG+  N VT   IL  C+    ++ GK +
Sbjct: 321 TWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRY 376



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++   G       G+Q+HA A+     ++  +   L+  YA   + + A  + +  
Sbjct: 154 TFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKL 213

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + WN LIS + R G    AL  + +M        +FTY SV  +   +  ++ G+
Sbjct: 214 DSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGK 273

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  I +  + + F  N L+ MY K G +  AR++FD++ ++D V+WNTM++A+A  G
Sbjct: 274 WVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYG 333

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ--ETYLDSVA 312
           L KEA   F EM++ G+ +N +T+  I   C   G  K        M+    E  +D   
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFV 393

Query: 313 TVIGL 317
           TV+ L
Sbjct: 394 TVVAL 398


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 173/538 (32%), Positives = 292/538 (54%), Gaps = 42/538 (7%)

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFG 223
            + +R +      Y S++ AC     +D  R +H+ +       S+F+ N+L+ +Y K G
Sbjct: 54  SVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCG 113

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            V  ARR+FD M  RD  SW ++I+ YA   +  EA  L   M                 
Sbjct: 114 AVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGM----------------- 156

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                        L  R +       S+    G  A S +G     ++IH   V+  + +
Sbjct: 157 -------------LRGRFKPNGFTFASLLKAAGASASSGIG-----EQIHALTVKYDWHD 198

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V +AL+ MY+RC  +  A  +F     K+ ++WN++++G+      E +  +F EM 
Sbjct: 199 DVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQ 258

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL--LLWNSLVEMYARSG 461
           R+G E  + T +S+    A +  L+ GK  H ++++     E L   + N++++MYA+SG
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSG---ERLSAFVGNTILDMYAKSG 315

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + +A+ VFD + ++D VT+ S++  +   G GR A+  FEEM K  +  + +T +++L+
Sbjct: 316 SMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILT 375

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSH GLV EG++ F+ M   Y + P+++H+  +VDL GRAGLLN A   I KMP  PT+
Sbjct: 376 ACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTA 434

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           A+W  LLG+C++H+N  IG++AA+ + E  P+++G  VL+ N+YA+TG WD  A+VR  M
Sbjct: 435 AVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMM 494

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           +  GV+K P C+WV+  N    F+ +D ++ +++EIY     ++  ++ AGYV   ++
Sbjct: 495 KATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDY 552



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 175/389 (44%), Gaps = 39/389 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C + ++L   + +HA         +  L   L+  Y       +A  + +    R 
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
              W  LI+ Y ++    EAL +   M   R + + FT+ S+LKA G       G  +H+
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 200 CIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            +   ++W   ++V +AL+ MY + G++D+A  +FD++  ++ VSWN +I+ +A KG  +
Sbjct: 190 -LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
               +F EMQ  G E    T++++                                    
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSV-----------------------------------F 273

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            A + +GAL+ GK +H   ++        V N ++ MY++   +  A  +F    +K ++
Sbjct: 274 SAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVV 333

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           TWNSML+ +       E+   F EM + GV  N +T  SIL  C+    ++ GK++   +
Sbjct: 334 TWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-M 392

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           ++       +  + ++V++  R+G + +A
Sbjct: 393 MKEYNLEPEIDHYVTVVDLLGRAGLLNDA 421



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++   G   +   G+Q+HA  +      +  +   L+  YA     + A  + +  
Sbjct: 167 TFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQL 226

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN LI+ + R G     L ++ +MQ       +FTY SV  A   +  ++ G+
Sbjct: 227 ESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGK 286

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  I +    S FV N ++ MY K G +  AR++FD++ ++D V+WN+M++A+A  G
Sbjct: 287 WVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYG 346

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR--TQETYLDSVA 312
           L +EA   F EM++ GV +N IT+ +I   C   G  K   +    M+    E  +D   
Sbjct: 347 LGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYV 406

Query: 313 TVIGL 317
           TV+ L
Sbjct: 407 TVVDL 411


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/558 (32%), Positives = 295/558 (52%), Gaps = 39/558 (6%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCI 201
           WN L+S + R G    AL V++ + S   R ++ T+   L AC  + D+D    V     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSS-ARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            A +   +FV +AL+ +Y + G ++ A R+FD M  +D V+                   
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVA------------------- 175

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                           W+T+  G +  G     L + SRMR      D V  V  + AC 
Sbjct: 176 ----------------WSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACM 219

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
             G  ++G  +HG  +R C         +L++MY++   L  A  +F+M   ++ +TW++
Sbjct: 220 STGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSA 279

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++SG+     A E+  LFRE+   G++P    + S L  CA V  L+ GK  H +ILRR 
Sbjct: 280 LISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR- 338

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
                 +L  ++++MY++ G +  A+ +F+ +S RD V + ++IA  G  G G  AL LF
Sbjct: 339 -LEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALF 397

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           +E+N+  IKPDH T  ++LSA SHSGLV EG+  F+RM   +GI P  +H+ C+VDL  R
Sbjct: 398 QELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLAR 457

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           +GL+ +A +++  M   PT A+W  LL  C  ++   +GE  A+K+LE RPE+ G   L+
Sbjct: 458 SGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALV 517

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+YAA   WDK+ ++R  M+D G +K+PG + ++       F+++D S+ Q +EI  ++
Sbjct: 518 SNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMV 577

Query: 682 GGLTELMKDAGYVVKEEF 699
             L   M+  GYV + EF
Sbjct: 578 AKLNSEMRKLGYVPRTEF 595



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 204/450 (45%), Gaps = 44/450 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C ++  L   + +   A A G   +  +   L+  Y+       A  + +  
Sbjct: 109 TFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGM 168

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + W+ +++ +V  G   EAL +Y +M+   +  D      V++AC    +   G 
Sbjct: 169 PRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGA 228

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   +  C    +    +LVSMY K G +DVA ++F  M  R+ V+W+ +IS +A  G
Sbjct: 229 SVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNG 288

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  LF E+Q +G++    +W                                 A V
Sbjct: 289 RAVEALDLFRELQADGLQ--PCSW---------------------------------ALV 313

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYILFKMTAE 373
             L AC+ VG LKLGK IHG  +R    E++ +   A++ MYS+C  L  A  LF   + 
Sbjct: 314 SALLACASVGFLKLGKSIHGFILRRL--EWQCILGTAVLDMYSKCGSLESARKLFNKLSS 371

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + ++ WN++++      C  ++  LF+E+  +G++P++ T AS+L   +    ++ GK +
Sbjct: 372 RDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFW 431

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
              +++          +  +V++ ARSG V EA  +   M     +    ++    +  +
Sbjct: 432 FDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNK 491

Query: 494 GRVALKLFEEMNKN--QIKPDHVTMVAVLS 521
               L+L E + K   +++P+ + ++A++S
Sbjct: 492 ---KLELGETIAKKILELRPEDIGVLALVS 518



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 12/248 (4%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCC-----GKVKALAQGKQLHACAI 101
           F   G   +A   ++R+R    S D V+     +I  C      ++ A   G+ L  C  
Sbjct: 183 FVTAGRPVEALAMYSRMREHGVSDDEVV--MVGVIQACMSTGNARIGASVHGRLLRHC-- 238

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
              +  + V    LV+ YA     + AC +      R  + W+ LIS + ++G   EAL 
Sbjct: 239 ---MRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALD 295

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGK 221
           +++++Q+  ++  ++   S L AC  +  +  G+ +H  I    EW   +  A++ MY K
Sbjct: 296 LFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRLEWQCILGTAVLDMYSK 355

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G ++ AR+LF+K+  RD V WN +I+   + G   +A  LF E+ E G++ +  T+ ++
Sbjct: 356 CGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASL 415

Query: 282 AGGCLRTG 289
                 +G
Sbjct: 416 LSALSHSG 423


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 192/627 (30%), Positives = 319/627 (50%), Gaps = 46/627 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE--KNPVLVPKLVTFYASFSLYNNACFLVE 133
           SF ++      +        +H   + LG E   +  +V   +  YA       A  + +
Sbjct: 188 SFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFD 247

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ-MQSRRIRGDNFTYPSVLKACGEMMDVD 192
           N   R    WN +IS +V++ F  E + ++ Q ++S     D  T  S + A   +   +
Sbjct: 248 NCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFE 307

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
               +H+  I       + V NAL++MY +   +D + ++FD M E+             
Sbjct: 308 LAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEK------------- 354

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                                 +V++WNT+    ++ G     L L   M+ Q+  +DSV
Sbjct: 355 ----------------------DVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSV 392

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-- 369
                L A S +    +GK+ HG  +R    ++E + + LI MY++   +  A  +F+  
Sbjct: 393 TVTALLSAASDLRNPDIGKQTHGYLLRNGI-QFEGMDSYLIDMYAKSGLIEAAQNVFEKS 451

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
            + E+   TWNSM+SGYT     +++  + R+M    V PN VT+ASILP C     +  
Sbjct: 452 FSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDW 511

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK+ H + +R  + ++++ +  +L++MY++SG +  A++VF   + +  VTY+++I GYG
Sbjct: 512 GKQLHGFSIRNDL-DQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYG 570

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G  AL +F  M K+ I+PD VT+VAVLSACS++GLV EG + FE M ++Y I P  
Sbjct: 571 QHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPST 630

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           EHF C+ D+ GRAG ++KA E +  +        +W +LL AC+IH+   +G+  A+KLL
Sbjct: 631 EHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLL 690

Query: 609 ETRPEN--SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
           E    N  +GY+VL++N+YA    W+ +  VR  MR+ G++K  G +W++     + F  
Sbjct: 691 EMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFAS 750

Query: 667 DDTSNVQAQEIYPLLGGLTELMKDAGY 693
            D  + Q+ +IY +L  L   MK AGY
Sbjct: 751 KDRKHPQSDQIYSMLEELLMEMKHAGY 777



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/559 (25%), Positives = 258/559 (46%), Gaps = 61/559 (10%)

Query: 65  ITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           + ++S  V  DS+ +  ++  C   + L  GK +HA  +   +  + ++   L+  Y+  
Sbjct: 61  MKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMC 120

Query: 123 SLYN---------NACFLV----ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           S            + C LV    +    R  + WN LI+ YVR   YAEA+  +  M   
Sbjct: 121 SSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKI 180

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW--SLFVHNALVSMYGKFGQVD 226
            I+    ++ +V  A   + D     VVH   +    E+   L+V ++ + MY + G ++
Sbjct: 181 GIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLE 240

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A+++FD  LER+   WNTMISA+       E  QLF                       
Sbjct: 241 FAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLF----------------------- 277

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
               F+ V        +++  +D V  +  + A SH+   +L +++H   ++        
Sbjct: 278 ----FQAV-------ESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVC 326

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V NALI MYSRC  +  ++ +F    EK +++WN+M+S +      +E+  LF EM +  
Sbjct: 327 VMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQD 386

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           +  + VT+ ++L   + + N   GK+ H Y+LR  +  E +  +  L++MYA+SG +  A
Sbjct: 387 LMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSY--LIDMYAKSGLIEAA 444

Query: 467 KSVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           ++VF+      RD+ T+ S+++GY   G    A  +  +M   ++ P+ VT+ ++L AC+
Sbjct: 445 QNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACN 504

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
            SG +  G KQ    +    +   +     ++D+Y ++G +  A+ + +K          
Sbjct: 505 PSGYIDWG-KQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYS 563

Query: 585 ATLLGACQIHRNTGIGEWA 603
             +LG  Q     G+GE A
Sbjct: 564 TMILGYGQ----HGMGESA 578



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 218/476 (45%), Gaps = 74/476 (15%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSR--RIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           WN +I   V + F  EAL  Y  M+S   +++ D++TY SVLKAC +  ++  G+ VH+ 
Sbjct: 38  WNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAH 97

Query: 201 IDAC-HEWSLFVHNALVSMY---------GK----FGQVDVARRLFDKMLERDAVSWNTM 246
              C    S  V+N+L++MY         GK    + + D+ R++FD M +R  V+WNT+
Sbjct: 98  FLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTL 157

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           I+ Y     + EA + F  M + G++ + +++  +       G+FK              
Sbjct: 158 IAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKN------------- 204

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                A V+      H   +KLG E     V   Y     V ++ I MY+    L  A  
Sbjct: 205 -----ANVV------HGMLVKLGSEY----VNDLY-----VVSSAIFMYAELGCLEFAKK 244

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVA 425
           +F    E++   WN+M+S +   + + E   LF +   S     + VT+ S +   + + 
Sbjct: 245 VFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQ 304

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
             +  ++ H ++++     + + + N+L+ MY+R   +  +  +FD M  +D V++ ++I
Sbjct: 305 KFELAEQLHAFVIKNVAVTQ-VCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMI 363

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH----------SGLVVEGQKQ 535
           + +   G    AL LF EM K  +  D VT+ A+LSA S            G ++    Q
Sbjct: 364 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ 423

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK-MPYTPTSAMWATLLGA 590
           FE M S             ++D+Y ++GL+  A+ +  K   +    A W +++  
Sbjct: 424 FEGMDSY------------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 467



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 157/392 (40%), Gaps = 68/392 (17%)

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           GQ+ +AR+LFD +     V WNT+I          EA   +  M+    +V         
Sbjct: 18  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKC------- 70

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                     DS      L AC+    L +GK +H   +R    
Sbjct: 71  --------------------------DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMN 104

Query: 343 EYENVRNALITM----------------YSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
               V N+L+ M                YSRC  +R    +F    +++++ WN++++ Y
Sbjct: 105 PSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRK---VFDTMRKRTVVAWNTLIAWY 161

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR-AMFNE 445
              +   E+   F  M + G++P+ V+  ++ P  + + + ++    H  +++  + +  
Sbjct: 162 VRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVN 221

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL-FEEM 504
            L + +S + MYA  G +  AK VFD    R+   + ++I+ +         ++L F+ +
Sbjct: 222 DLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAV 281

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI------FPQLEHFACMVDL 558
                  D VT+++ +SA SH        ++FE    ++          Q+     ++ +
Sbjct: 282 ESEDAAIDEVTLLSAISAASH-------LQKFELAEQLHAFVIKNVAVTQVCVMNALIAM 334

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           Y R   ++ + +I   MP     + W T++ A
Sbjct: 335 YSRCNSIDTSFKIFDNMPEKDVVS-WNTMISA 365


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 189/625 (30%), Positives = 318/625 (50%), Gaps = 46/625 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            A ++  C K     QG Q+HA A+ +G   + ++   L+  Y   S  + AC + +   
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + W  L+  Y+++G    +L +  +M    ++ + FT+ + LKACG +  V+ G  
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H  C+ +  EW   V NA + MY K G++ +A ++F+KM  R                 
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFR----------------- 169

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                             N+++WN +  G    GN +  L L  RM+ Q    D      
Sbjct: 170 ------------------NLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTS 211

Query: 316 GLGACSHVGALKLGKEIHGSAV-RGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAE 373
            L AC  +GA++ G +IH S + RG      N+  +A++ +Y++C  L  A  +F    +
Sbjct: 212 TLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQ 271

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K++I+W++++ G+       E+  LFR++  S    +   ++ ++ + A +A ++ GK+ 
Sbjct: 272 KNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQM 331

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           HCYIL+       + + NS+++MY + G   EA+ +F  M  R+ V++T +I GYG  G 
Sbjct: 332 HCYILK-VPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGL 390

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  A+ LF  M  + I+ D V  +A+LSACSHSGL+ E Q+ F R+ + + + P +EH+A
Sbjct: 391 GEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYA 450

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVD+ GRAG L +AK +I  M   P   +W TLL AC++H N  IG    E L     +
Sbjct: 451 CMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTD 510

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N   YV+++N+YA  G W +  +VR  ++  G++K  G +WV+       F   D +   
Sbjct: 511 NPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDT--- 567

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEE 698
               +PL   + E++K+    VKEE
Sbjct: 568 ----HPLTEKIHEMLKEMERRVKEE 588



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 192/421 (45%), Gaps = 39/421 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+  +  CG +  +  G Q+H   +  G E   V+    +  Y+       A  +    
Sbjct: 107 TFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKM 166

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+ +  +G   ++L ++++MQ +    D FT+ S LKACG +  +  G 
Sbjct: 167 PFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGT 226

Query: 196 VVH-SCIDACHEWSL--FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
            +H S I      S+   + +A+V +Y K G +  A+++FD++ +++ +SW+ +I  +A 
Sbjct: 227 QIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQ 286

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
           +G   EA  LF                                    ++R   + +D   
Sbjct: 287 EGNLLEAMDLF-----------------------------------RQLRESVSNVDGFV 311

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
             I +G  + +  ++ GK++H   ++   G   +V N++I MY +C     A  LF    
Sbjct: 312 LSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQ 371

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            +++++W  M++GY      E++  LF  M   G+E + V   ++L  C+    ++  +E
Sbjct: 372 VRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQE 431

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQ 491
           +   +        ++  +  +V++  R+G++ EAK++ + M  + +E  + +L++   + 
Sbjct: 432 YFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVH 491

Query: 492 G 492
           G
Sbjct: 492 G 492



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 13/258 (5%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           GN  K+   F R++      D    +F   +  CG + A+  G Q+HA  I  G    P+
Sbjct: 185 GNGRKSLVLFQRMQGQGEVPDEF--TFTSTLKACGALGAIRGGTQIHASLITRGF---PI 239

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNI------RYPLPWNLLISLYVRDGFYAEALCVYK 164
            +  ++   A   LY    +L E   +      +  + W+ LI  + ++G   EA+ +++
Sbjct: 240 SIRNIIA-SAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFR 298

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           Q++      D F    ++    ++  V+ G+ +H  I        + V N+++ MY K G
Sbjct: 299 QLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCG 358

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
             + A RLF +M  R+ VSW  MI+ Y   GL ++A  LF  MQ +G+E++ + +  +  
Sbjct: 359 LTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLS 418

Query: 284 GCLRTGNFKGVLELLSRM 301
            C  +G  +   E  SR+
Sbjct: 419 ACSHSGLIRESQEYFSRL 436


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/537 (32%), Positives = 295/537 (54%), Gaps = 42/537 (7%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQ 224
           + +R +      Y S++ AC     +D  R +H+ +       S+F+ N+L+ +Y K G 
Sbjct: 55  VDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGA 114

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           V  ARR+FD M  RD  SW ++I+ YA   +  EA  L   M     + N  T+ ++   
Sbjct: 115 VADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASL--- 171

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                        +   GA +  G   +G++IH   V+  + + 
Sbjct: 172 -----------------------------LKAAGASASSG---IGEQIHALTVKYDWHDD 199

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V +AL+ MY+RC  +  A  +F     K+ ++WN++++G+      E +  +F EM R
Sbjct: 200 VYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQR 259

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL--LLWNSLVEMYARSGK 462
           +G E  + T +S+    A +  L+ GK  H ++++     E L   + N++++MYA+SG 
Sbjct: 260 NGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSG---ERLSAFVGNTILDMYAKSGS 316

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + +A+ VFD + ++D VT+ S++  +   G GR A+  FEEM K  +  + +T +++L+A
Sbjct: 317 MIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTA 376

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSH GLV EG++ F+ M   Y + P+++H+  +VDL GRAGLLN A   I KMP  PT+A
Sbjct: 377 CSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAA 435

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W  LLG+C++H+N  IG++AA+ + E  P+++G  VL+ N+YA+TG WD  A+VR  M+
Sbjct: 436 VWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMK 495

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
             GV+K P C+WV+  N    F+ +D ++ +++EIY     ++  ++ AGYV   ++
Sbjct: 496 ATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDY 552



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 175/389 (44%), Gaps = 39/389 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C + ++L   + +HA         +  L   L+  Y       +A  + +    R 
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
              W  LI+ Y ++    EAL +   M   R + + FT+ S+LKA G       G  +H+
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 200 CIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            +   ++W   ++V +AL+ MY + G++D+A  +FD++  ++ VSWN +I+ +A KG  +
Sbjct: 190 -LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
               +F EMQ  G E    T++++                                    
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSV-----------------------------------F 273

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            A + +GAL+ GK +H   ++        V N ++ MY++   +  A  +F    +K ++
Sbjct: 274 SAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVV 333

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           TWNSML+ +       E+   F EM + GV  N +T  SIL  C+    ++ GK++   +
Sbjct: 334 TWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DM 392

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           ++       +  + ++V++  R+G + +A
Sbjct: 393 MKEYNLEPEIDHYVTVVDLLGRAGLLNDA 421



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++   G   +   G+Q+HA  +      +  +   L+  YA     + A  + +  
Sbjct: 167 TFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQL 226

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN LI+ + R G     L ++ +MQ       +FTY SV  A   +  ++ G+
Sbjct: 227 ESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGK 286

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  I +    S FV N ++ MY K G +  AR++FD++ ++D V+WN+M++A+A  G
Sbjct: 287 WVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYG 346

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR--TQETYLDSVA 312
           L +EA   F EM++ GV +N IT+ +I   C   G  K   +    M+    E  +D   
Sbjct: 347 LGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYV 406

Query: 313 TVIGL 317
           TV+ L
Sbjct: 407 TVVDL 411


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 198/642 (30%), Positives = 327/642 (50%), Gaps = 47/642 (7%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA--- 128
           V   ++A +   C  + A   G QLH  A+      + ++    +  YA     ++A   
Sbjct: 256 VSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKL 315

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             L+ + N++    +N +I  Y R+    +A  ++ Q+Q      D  +    L A   +
Sbjct: 316 FSLLPDHNLQ---SYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVI 372

Query: 189 MDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
                G  +H   I +    ++ V NA++ MYGK G +  A  LFD+M  RD VSWN +I
Sbjct: 373 KGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAII 432

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA--GGCLRTGNFKGVLELLSRMRTQE 305
           +A                      E N     T++  G  LR           S+M   E
Sbjct: 433 TA---------------------CEQNESEGKTLSHFGAMLR-----------SKMEPDE 460

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
               SV     L AC+   A   G E+HG  ++   G    V +AL+ MYS+C  +  A 
Sbjct: 461 FTYGSV-----LKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAE 515

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +     E+++++WN+++SG++    +E+S   F  M   GVEP+  T A++L  CA +A
Sbjct: 516 KIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLA 575

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            +  GK+ H  +++  + ++ + + ++LV+MY++ G + ++  +F    +RD VT+ ++I
Sbjct: 576 TVGLGKQIHAQMIKLELLSD-VYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMI 634

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
            G+   G G  AL+LFE M    IKP+H T V+VL ACSH G   +G   F++M SIY +
Sbjct: 635 CGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYAL 694

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
            PQLEH++CMVD+ GR+G + +A  +I  MP+   + +W TLL  C+I  N  + E AA 
Sbjct: 695 EPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAAS 754

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
            LL+  PE+S  Y L++N+YA  G W +++K+R  MR   ++K PGC+W++  +    FL
Sbjct: 755 SLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFL 814

Query: 666 VDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVE 707
           V D ++ + + IY LL  L   M+ +G   + +    EE+ E
Sbjct: 815 VCDKAHPKCEMIYSLLDLLICDMRRSGCAPEIDTIQVEEVEE 856



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 218/429 (50%), Gaps = 19/429 (4%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           T+  + + C     +  G+  H+  I +    ++FV N L+ MY K   ++ A ++F++M
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
            +RD VSWNTM+   A  G  + A  +F  M   G   +V++WN++  G L+ G+ +  +
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHG---DVVSWNSLISGYLQNGDIQKSI 142

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR-NALITM 354
            +  +MR      D     + L  CS +    LG +IHG AV+  + +Y+ V  +AL+ M
Sbjct: 143 AVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGF-DYDVVTGSALVDM 201

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y++C  L  +  +F    +K+ I+W++ ++G    D       LF+EM R G+  +  T 
Sbjct: 202 YAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTY 261

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           AS+   CA ++  + G + HC+ L+   F   +++  + ++MYA+   + +A  +F L+ 
Sbjct: 262 ASVFRSCAGLSASRLGTQLHCHALKTD-FGSDVIVGTATLDMYAKCDNMSDAYKLFSLLP 320

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
             +  +Y ++I GY    +G  A KLF ++ KN    D V++   LSA +    V++G  
Sbjct: 321 DHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAA----VIKGHS 376

Query: 535 QFERMTSIYGIFPQLEHFAC----MVDLYGRAGLLNKAKEIITKMPY-TPTSAMWATLLG 589
           +  ++  +  I   L    C    ++D+YG+ G L +A  +  +M    P S  W  ++ 
Sbjct: 377 EGLQLHGL-AIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVS--WNAIIT 433

Query: 590 ACQIHRNTG 598
           AC+ + + G
Sbjct: 434 ACEQNESEG 442



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/570 (22%), Positives = 244/570 (42%), Gaps = 54/570 (9%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G++ K+   F ++R      D    + A  +  C  ++    G Q+H  A+ +G + + V
Sbjct: 136 GDIQKSIAVFLKMRDLGVMFDHT--TLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVV 193

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
               LV  YA  +   ++  +      +  + W+  I+  V++      L ++K+MQ + 
Sbjct: 194 TGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKG 253

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW------SLFVHNALVSMYGKFGQ 224
           I     TY SV ++C  +     G  +H     CH         + V  A + MY K   
Sbjct: 254 IGVSQSTYASVFRSCAGLSASRLGTQLH-----CHALKTDFGSDVIVGTATLDMYAKCDN 308

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  A +LF  + + +  S+N MI  YA      +AF+LF+++Q+                
Sbjct: 309 MSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFS------------ 356

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                   D V+    L A + +     G ++HG A++      
Sbjct: 357 -----------------------FDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSN 393

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V NA++ MY +C  L  A  LF     +  ++WN++++     +   ++   F  M R
Sbjct: 394 ICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLR 453

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           S +EP+  T  S+L  CA      +G E H  I++  M    + + ++LV+MY++ G + 
Sbjct: 454 SKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGM-GLKMFVGSALVDMYSKCGMME 512

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           EA+ +   +  +  V++ ++I+G+ +Q +   + + F  M +  ++PD+ T   VL  C+
Sbjct: 513 EAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCA 572

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           +   V  G++   +M  +  +   +   + +VD+Y + G ++ +  +  K P    S  W
Sbjct: 573 NLATVGLGKQIHAQMIKLE-LLSDVYITSTLVDMYSKCGNMHDSLLMFRKAP-KRDSVTW 630

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
             ++     H   G+GE A E       EN
Sbjct: 631 NAMICGFAYH---GLGEEALELFEHMLHEN 657



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/588 (21%), Positives = 260/588 (44%), Gaps = 87/588 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA--------------- 120
           +F+HI   C   +AL  GK+ HA  I  G      +   L+  Y                
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 121 ---SFSLYNNACF------------LVENSNIRYP--LPWNLLISLYVRDGFYAEALCVY 163
                  +N   F             V NS   +   + WN LIS Y+++G   +++ V+
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            +M+   +  D+ T    LK C  + D   G  +H   +    ++ +   +ALV MY K 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             ++ +  +F ++ +++ +SW+  I+            +LF EMQ +G+ V+  T+ ++ 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASV- 264

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                               +C+ + A +LG ++H  A++  +G
Sbjct: 265 ----------------------------------FRSCAGLSASRLGTQLHCHALKTDFG 290

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V  A + MY++C ++  AY LF +  + ++ ++N+M+ GY   +   ++  LF ++
Sbjct: 291 SDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQL 350

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            ++    + V+++  L   A +     G + H   ++  + + ++ + N++++MY + G 
Sbjct: 351 QKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNL-SSNICVANAILDMYGKCGA 409

Query: 463 VPEAKSVFDLMSRRDEVTYTSLI-AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           + EA  +FD M  RD V++ ++I A    + EG+  L  F  M +++++PD  T  +VL 
Sbjct: 410 LVEASGLFDEMEIRDPVSWNAIITACEQNESEGKT-LSHFGAMLRSKMEPDEFTYGSVLK 468

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHF--ACMVDLYGRAGLLNKAKEIITKM 575
           AC+       GQ+ F     ++G   +    L+ F  + +VD+Y + G++ +A++I  ++
Sbjct: 469 ACA-------GQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRL 521

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE--TRPENSGYYVLI 621
               T   W  ++    + + +   +     +LE    P+N  Y  ++
Sbjct: 522 E-EQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVL 568


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 193/646 (29%), Positives = 342/646 (52%), Gaps = 51/646 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  C + + +  GK +H  A+ L L+K  V+   L+  Y+     N+A  + + +
Sbjct: 291 TLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLN 350

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR--RIRGDNFTYPSVLKACGEMMDVDF 193
           N +  + WN ++  +   G   +   + +QM +    +R D  T  + +  C       F
Sbjct: 351 NNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC-------F 403

Query: 194 GRVVHSCIDACHEWSL---FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
              V   +   H +SL   FVHN                         + +  N  +++Y
Sbjct: 404 EESVLPNLKELHCYSLKQEFVHN-------------------------NELVANAFVASY 438

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           A  G    A ++F  ++ + V     +WN + GG  ++ + +  L+   +M++     D 
Sbjct: 439 AKCGSLSYAHRVFCSIRSKTVN----SWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDL 494

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 L ACS + +LKLGKE+HG  +R        V  +L+++Y  C +L  A++LF  
Sbjct: 495 FTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDA 554

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             +K++++WN+M++GY      E +  LFR+M   GV+P  +++ S+   C+ + +L+ G
Sbjct: 555 MEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLG 614

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           +E H Y L+  +  ++  +  S+++MYA++G V E+  VF+ +  R   ++ +++ GYGI
Sbjct: 615 REAHGYALK-CLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGI 673

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G  + A+KLFEEM +    PD +T + VL+AC+HSGLV EG    ++M +++G+ P L+
Sbjct: 674 HGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLK 733

Query: 551 HFACMVDLYGRAGLLNKAKEIIT-KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           H+AC++D+  RAG L++A +I T +M   P   +W  LL +C+IH+N  +GE  A KL  
Sbjct: 734 HYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFV 793

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD-AGNVFSPFLVDD 668
           + PE    YVL++N+YA +G WD++ KVR  M+++ +RK  GC+W++  G VFS F+  +
Sbjct: 794 SEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFS-FVAGE 852

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGY-----VVKEEFCSEEEIVEEI 709
           +S    +EI  L   L   +   GY      V+ +  SEEE  E++
Sbjct: 853 SSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDL-SEEEKTEQL 897



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 150/585 (25%), Positives = 274/585 (46%), Gaps = 72/585 (12%)

Query: 85  GKVKALAQGKQLHA-CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           G+ K +  G+++H   + +  L  + VL  +++T Y+     +++  + +    +    W
Sbjct: 92  GRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQW 151

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           N +IS Y R+  Y   L ++ +M +   +  DNFT+P V+KAC  + +V  G  VH  + 
Sbjct: 152 NAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVV 211

Query: 203 ACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                  +FV NALVS YG  G V  A R+F  M ER+ VSWN+MI  ++  GL +E F 
Sbjct: 212 KTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFL 271

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGAC 320
           L  +M E+  E+                                 +   VAT+   L  C
Sbjct: 272 LLGQMMEKDDEI--------------------------------AFTPDVATLATVLPVC 299

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           +    + +GK +HG A++    +   V NAL+ MYS+C  +  A ++FK+   K++++WN
Sbjct: 300 ARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWN 359

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           +M+ G++      ++  L R+M   G  +  + VTI + +P+C   + L + KE HCY L
Sbjct: 360 TMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSL 419

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           ++   + + L+ N+ V  YA+ G +  A  VF  +  +   ++ +LI GY    + R++L
Sbjct: 420 KQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSL 479

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSH----------SGLVVEGQKQFE----------- 537
             + +M  + + PD  T+ ++LSACS            GL++  + + +           
Sbjct: 480 DAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLY 539

Query: 538 ----RMTSIYGIFPQLEH-----FACMVDLYGRAGLLNKAKEIITKM---PYTPTSAMWA 585
                +++ + +F  +E      +  MV+ Y + G   +A  +  +M      P      
Sbjct: 540 IHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMM 599

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL-IANMYAATG 629
           ++ GAC +  +  +G  A    L+   E++ +    + +MYA  G
Sbjct: 600 SVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNG 644



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 165/350 (47%), Gaps = 45/350 (12%)

Query: 183 KACGEMMDVDFGRVVHSCIDACHEWS--LFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           +A G   D+  GR +H  +      S    +   +++MY   G  D +R +FD + +++ 
Sbjct: 89  QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNL 148

Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
             WN +IS+Y+   L                                   +  VLE+  +
Sbjct: 149 FQWNAVISSYSRNEL-----------------------------------YHNVLEMFVK 173

Query: 301 MRTQETYL-DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
           M T+   L D+      + AC+ V  +++G  +HG  V+    E   V NAL++ Y    
Sbjct: 174 MITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNG 233

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE----PNYVTIA 415
            +  A  +FK+  E+++++WNSM+  ++    +EE   L  +M     E    P+  T+A
Sbjct: 234 SVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLA 293

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           ++LP+CAR   +  GK  H   ++ ++ ++ +++ N+L++MY++ G + +A+ +F L + 
Sbjct: 294 TVLPVCARDREIGVGKGVHGLAMKLSL-DKEVVVNNALMDMYSKCGCINDAQVIFKLNNN 352

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSAC 523
           ++ V++ +++ G+   G+      L  +M      ++ D VT++  +  C
Sbjct: 353 KNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 187/605 (30%), Positives = 317/605 (52%), Gaps = 46/605 (7%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q+H   I LG E N ++   LV  Y        A  L ++   +  + +N L++ Y  +G
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHN 213
              EA+ ++ ++ +  I+  +FT+ ++L A   + D  FG+ VH   +     W++FV N
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGN 280

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           AL+  Y K  QVD   +LF +M E D +S+N +I++YA                      
Sbjct: 281 ALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYA---------------------- 318

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD----SVATVIGLGACSHVGALKLG 329
               WN         G FK   +L  ++  Q T  D      AT++ +   S    L++G
Sbjct: 319 ----WN---------GQFKESFDLFRKL--QFTRFDRRQFPFATLLSIATSSL--NLRMG 361

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           ++IH  A+         V NAL+ MY++C   + A  +F   A KS + W +M+S Y   
Sbjct: 362 RQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQK 421

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              EE   +F +M R+GV  +  T ASIL  CA +A++  G++ H  ++R   F  ++  
Sbjct: 422 GKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSG-FMSNVYS 480

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            ++L++ YA+ G + +A   F  M  R+ V++ +LI+ Y   G     L  F++M ++  
Sbjct: 481 GSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGY 540

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           KPD V+ ++VLSACSH G V E    F  MT IY + P+ EH+  MVD+  R G  ++A+
Sbjct: 541 KPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAE 600

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP-ENSGYYVLIANMYAAT 628
           +++T+MP+ P+  MW+++L +C+IH+N  + + AA++L       ++  Y+ ++N+YA  
Sbjct: 601 KLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVA 660

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           G WD +AKV+  MRD GVRK+P  +WV+  +    F  +D S+ + ++I   +  L++ M
Sbjct: 661 GQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEM 720

Query: 689 KDAGY 693
           +  GY
Sbjct: 721 EKKGY 725



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 118/503 (23%), Positives = 233/503 (46%), Gaps = 40/503 (7%)

Query: 90  LAQGKQLHACAIALGLE-KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           L +G  +HA  +   +  KN + +  +++ +  F   + A  L +    R  + W +LI 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
            Y++     EA  +Y  M+   I  D  T  ++L   GE+   +    +H+  I   +E+
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           +L V N+LV  Y K   + +A +LF  ML +D V++N++++ Y+++GL +EA +LF+E+ 
Sbjct: 174 NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH 233

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
             G++ +  T+  +                             ++  +GL         K
Sbjct: 234 NSGIKPSDFTFAAL-----------------------------LSAAVGLDDT------K 258

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G+++HG  ++  +     V NAL+  YS+   +     LF    E   I++N +++ Y 
Sbjct: 259 FGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYA 318

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                +ES  LFR++  +  +      A++L +     NL+ G++ HC  +     N   
Sbjct: 319 WNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGA-NFES 377

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N+LV+MYA+     EA+ +FD ++ +  V +T++I+ Y  +G+    + +F +M + 
Sbjct: 378 RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRT 437

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            +  D  T  ++L AC++   +  G +Q   +    G    +   + ++D Y + G +  
Sbjct: 438 GVPADQATFASILRACANLASISLG-RQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTD 496

Query: 568 AKEIITKMPYTPTSAMWATLLGA 590
           A +   +MP    S  W  L+ A
Sbjct: 497 AIKSFGEMP-ERNSVSWNALISA 518



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 178/379 (46%), Gaps = 9/379 (2%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N  V+ + + G +  A ++FD+M  ++ +S N MIS +   G   +A +LF  M    VE
Sbjct: 47  NFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGM----VE 102

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
              ++W  + GG L++   K    L + MR      D V  V  L     +    +  +I
Sbjct: 103 RTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQI 162

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           H   ++  Y     V N+L+  Y +   L  A  LFK    K  +T+NS+++GY++    
Sbjct: 163 HTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLN 222

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           EE+  LF E+  SG++P+  T A++L     + + + G++ H ++L +  F  ++ + N+
Sbjct: 223 EEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL-KTNFVWNVFVGNA 281

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L++ Y++  +V E   +F  M   D ++Y  +I  Y   G+ + +  LF ++   +    
Sbjct: 282 LLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 513 HVTMVAVLS-ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
                 +LS A S   L +  Q   + +T       ++E+   +VD+Y +     +A++I
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMYAKCNGDKEAQKI 399

Query: 572 ITKMPYTPTSAMWATLLGA 590
              +    T   W  ++ A
Sbjct: 400 FDNIACKST-VPWTAMISA 417



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 21/215 (9%)

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L+ G   H + +   M  ++ +  N ++  + + GK+ +A+ +FD M  R  V++T LI 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH---SGLVVEGQKQFERMTSIY 543
           GY    + + A +L+ +M +  I+PD+VT+V +LS         ++V+      ++   Y
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 544 GIFPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGE 601
            +        C  +VD Y +   L  A ++   M    T    + + G    + N G+ E
Sbjct: 174 NL------MVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTG----YSNEGLNE 223

Query: 602 WAAEKLLETRPENSGY----YVLIANMYAATGCWD 632
            A E  LE    NSG     +   A + AA G  D
Sbjct: 224 EAIELFLEL--HNSGIKPSDFTFAALLSAAVGLDD 256


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 192/627 (30%), Positives = 319/627 (50%), Gaps = 46/627 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLE--KNPVLVPKLVTFYASFSLYNNACFLVE 133
           SF ++      +        +H   + LG E   +  +V   +  YA       A  + +
Sbjct: 212 SFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFD 271

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ-MQSRRIRGDNFTYPSVLKACGEMMDVD 192
           N   R    WN +IS +V++ F  E + ++ Q ++S     D  T  S + A   +   +
Sbjct: 272 NCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFE 331

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
               +H+  I       + V NAL++MY +   +D + ++FD M E+             
Sbjct: 332 LAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEK------------- 378

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                                 +V++WNT+    ++ G     L L   M+ Q+  +DSV
Sbjct: 379 ----------------------DVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSV 416

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-- 369
                L A S +    +GK+ HG  +R    ++E + + LI MY++   +  A  +F+  
Sbjct: 417 TVTALLSAASDLRNPDIGKQTHGYLLRNGI-QFEGMDSYLIDMYAKSGLIEAAQNVFEKS 475

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
            + E+   TWNSM+SGYT     +++  + R+M    V PN VT+ASILP C     +  
Sbjct: 476 FSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDW 535

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK+ H + +R  + ++++ +  +L++MY++SG +  A++VF   + +  VTY+++I GYG
Sbjct: 536 GKQLHGFSIRNDL-DQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYG 594

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G  AL +F  M K+ I+PD VT+VAVLSACS++GLV EG + FE M ++Y I P  
Sbjct: 595 QHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPST 654

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           EHF C+ D+ GRAG ++KA E +  +        +W +LL AC+IH+   +G+  A+KLL
Sbjct: 655 EHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLL 714

Query: 609 ETRPEN--SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
           E    N  +GY+VL++N+YA    W+ +  VR  MR+ G++K  G +W++     + F  
Sbjct: 715 EMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFAS 774

Query: 667 DDTSNVQAQEIYPLLGGLTELMKDAGY 693
            D  + Q+ +IY +L  L   MK AGY
Sbjct: 775 KDRKHPQSDQIYSMLEELLMEMKHAGY 801



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/559 (25%), Positives = 258/559 (46%), Gaps = 61/559 (10%)

Query: 65  ITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           + ++S  V  DS+ +  ++  C   + L  GK +HA  +   +  + ++   L+  Y+  
Sbjct: 85  MKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMC 144

Query: 123 SLYN---------NACFLV----ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           S            + C LV    +    R  + WN LI+ YVR   YAEA+  +  M   
Sbjct: 145 SSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKI 204

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW--SLFVHNALVSMYGKFGQVD 226
            I+    ++ +V  A   + D     VVH   +    E+   L+V ++ + MY + G ++
Sbjct: 205 GIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLE 264

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A+++FD  LER+   WNTMISA+       E  QLF                       
Sbjct: 265 FAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLF----------------------- 301

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
               F+ V        +++  +D V  +  + A SH+   +L +++H   ++        
Sbjct: 302 ----FQAV-------ESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVC 350

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V NALI MYSRC  +  ++ +F    EK +++WN+M+S +      +E+  LF EM +  
Sbjct: 351 VMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQD 410

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           +  + VT+ ++L   + + N   GK+ H Y+LR  +  E +  +  L++MYA+SG +  A
Sbjct: 411 LMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSY--LIDMYAKSGLIEAA 468

Query: 467 KSVFD--LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           ++VF+      RD+ T+ S+++GY   G    A  +  +M   ++ P+ VT+ ++L AC+
Sbjct: 469 QNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACN 528

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
            SG +  G KQ    +    +   +     ++D+Y ++G +  A+ + +K          
Sbjct: 529 PSGYIDWG-KQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYS 587

Query: 585 ATLLGACQIHRNTGIGEWA 603
             +LG  Q     G+GE A
Sbjct: 588 TMILGYGQ----HGMGESA 602



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 218/476 (45%), Gaps = 74/476 (15%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSR--RIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           WN +I   V + F  EAL  Y  M+S   +++ D++TY SVLKAC +  ++  G+ VH+ 
Sbjct: 62  WNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAH 121

Query: 201 IDAC-HEWSLFVHNALVSMY---------GK----FGQVDVARRLFDKMLERDAVSWNTM 246
              C    S  V+N+L++MY         GK    + + D+ R++FD M +R  V+WNT+
Sbjct: 122 FLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTL 181

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           I+ Y     + EA + F  M + G++ + +++  +       G+FK              
Sbjct: 182 IAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKN------------- 228

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                A V+      H   +KLG E     V   Y     V ++ I MY+    L  A  
Sbjct: 229 -----ANVV------HGMLVKLGSEY----VNDLY-----VVSSAIFMYAELGCLEFAKK 268

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVA 425
           +F    E++   WN+M+S +   + + E   LF +   S     + VT+ S +   + + 
Sbjct: 269 VFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQ 328

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
             +  ++ H ++++     + + + N+L+ MY+R   +  +  +FD M  +D V++ ++I
Sbjct: 329 KFELAEQLHAFVIKNVAVTQ-VCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMI 387

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH----------SGLVVEGQKQ 535
           + +   G    AL LF EM K  +  D VT+ A+LSA S            G ++    Q
Sbjct: 388 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ 447

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK-MPYTPTSAMWATLLGA 590
           FE M S             ++D+Y ++GL+  A+ +  K   +    A W +++  
Sbjct: 448 FEGMDSY------------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 491



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 157/392 (40%), Gaps = 68/392 (17%)

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           GQ+ +AR+LFD +     V WNT+I          EA   +  M+    +V         
Sbjct: 42  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKC------- 94

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                     DS      L AC+    L +GK +H   +R    
Sbjct: 95  --------------------------DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMN 128

Query: 343 EYENVRNALITM----------------YSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
               V N+L+ M                YSRC  +R    +F    +++++ WN++++ Y
Sbjct: 129 PSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRK---VFDTMRKRTVVAWNTLIAWY 185

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR-AMFNE 445
              +   E+   F  M + G++P+ V+  ++ P  + + + ++    H  +++  + +  
Sbjct: 186 VRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVN 245

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL-FEEM 504
            L + +S + MYA  G +  AK VFD    R+   + ++I+ +         ++L F+ +
Sbjct: 246 DLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAV 305

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI------FPQLEHFACMVDL 558
                  D VT+++ +SA SH        ++FE    ++          Q+     ++ +
Sbjct: 306 ESEDAAIDEVTLLSAISAASH-------LQKFELAEQLHAFVIKNVAVTQVCVMNALIAM 358

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           Y R   ++ + +I   MP     + W T++ A
Sbjct: 359 YSRCNSIDTSFKIFDNMPEKDVVS-WNTMISA 389


>gi|297742233|emb|CBI34382.3| unnamed protein product [Vitis vinifera]
          Length = 705

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 198/660 (30%), Positives = 336/660 (50%), Gaps = 46/660 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C   + L  G  +H   +  GL  N  +   L+  YA      +A  L ++   + 
Sbjct: 48  VLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLFDHMPDKT 107

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH- 198
            + W  ++S + + G + E + ++ +M    ++ + +T   +L+AC +  D+   +++H 
Sbjct: 108 VVSWTSMMSGHCQRGAFDEVISIFWRML-ETLQPNEYTLAVILQACAQKRDLKLVQLIHC 166

Query: 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             I        F+ N+L+  Y K G +  A +L  +++ RD VSW ++IS     G+ ++
Sbjct: 167 HIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVISGCVLNGMVEK 226

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN---FKGVLELLSRMRTQET--------- 306
           A   F EMQE+GV  N +T  +I   C        F+ V  L+ +   +E          
Sbjct: 227 ALLFFFEMQEDGVSPNTVTILSILQACSLINEWQVFQWVHGLVMKAEWRENVFVMNSLVE 286

Query: 307 -------------------------YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                    YL +      L  CSH   LKLG++IHG  ++  +
Sbjct: 287 MYSINGYFKEGFQIFCNFCFEGDGQYLSTETIATLLQGCSHSKCLKLGEQIHGYQIKHGF 346

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V N+LI MY+  +    A+ LF+  + + I++WN+M+S       + ++  L  E
Sbjct: 347 FPCTIVENSLIYMYAENERDDAAFQLFRKMSCRDIVSWNTMISSLVKGSSSYQALMLLSE 406

Query: 402 MFRSG----VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           +  +G    + P++VTI + +  C+ +A+LQ G+  H YI R  +  + + + NSLV+MY
Sbjct: 407 VHSNGGSDMIYPDFVTILASIQACSSLASLQLGQVIHGYITRAGLICD-IFVQNSLVDMY 465

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTM 516
            + G++  A+ V + M  RD  ++ SLIA YGI G G  AL +F+++ N    +P+ +T 
Sbjct: 466 GKCGRLHLAEKVSEEMPVRDLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITF 525

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
             +LSAC+H+GLV EG + F+ M   Y + P++EHFACMVDL GRAG L +A+  I KMP
Sbjct: 526 TNILSACAHAGLVAEGFEIFKSMKREYSLEPRIEHFACMVDLLGRAGRLEEAEAFIQKMP 585

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           + P   +W  LLG C +  N  I E  A+KL    P++  + V ++N+YA+   W+  AK
Sbjct: 586 FEPGPEVWGALLGGCGLFGNLDIAERVAKKLYILEPKSRAWRVALSNVYASVNKWEDAAK 645

Query: 637 VRTCM-RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
           VR  M R   ++K  G + V+       F+V DT + +A+ +Y +L G+ E ++DA  +V
Sbjct: 646 VRAEMRRSEELQKEGGWSSVEVRGQEFRFMVGDTMHPEARMVYAVLKGINEHIRDACRIV 705



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 122/219 (55%), Gaps = 2/219 (0%)

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
           T  DS+  V  L +C+    L+LG  IH + ++        V N+L+ MY++C  +  A 
Sbjct: 38  TLSDSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAA 97

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            LF    +K++++W SM+SG+      +E   +F  M  + ++PN  T+A IL  CA+  
Sbjct: 98  KLFDHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRMLET-LQPNEYTLAVILQACAQKR 156

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
           +L+  +  HC+I++   F     L NSL++ Y +SG +  A+ +   +  RD V++TS+I
Sbjct: 157 DLKLVQLIHCHIIKTG-FVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVI 215

Query: 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           +G  + G    AL  F EM ++ + P+ VT++++L ACS
Sbjct: 216 SGCVLNGMVEKALLFFFEMQEDGVSPNTVTILSILQACS 254



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 10/266 (3%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++  G   + F+ F           +  ++ A ++  C   K L  G+Q+H   I  G  
Sbjct: 288 YSINGYFKEGFQIFCNFCFEGDGQYLSTETIATLLQGCSHSKCLKLGEQIHGYQIKHGFF 347

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
              ++   L+  YA     + A  L    + R  + WN +IS  V+     +AL +  ++
Sbjct: 348 PCTIVENSLIYMYAENERDDAAFQLFRKMSCRDIVSWNTMISSLVKGSSSYQALMLLSEV 407

Query: 167 QSRRIRGDNFTYP------SVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMY 219
            S    G +  YP      + ++AC  +  +  G+V+H  I  A     +FV N+LV MY
Sbjct: 408 HSNG--GSDMIYPDFVTILASIQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMY 465

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE-VNVITW 278
           GK G++ +A ++ ++M  RD  SWN++I+AY   G    A  +F +++  G    N IT+
Sbjct: 466 GKCGRLHLAEKVSEEMPVRDLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITF 525

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQ 304
             I   C   G      E+   M+ +
Sbjct: 526 TNILSACAHAGLVAEGFEIFKSMKRE 551


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 187/612 (30%), Positives = 306/612 (50%), Gaps = 38/612 (6%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L  G+ +H   + LGL+ N  +   L+T Y+      +A  + +    R  + WN +++ 
Sbjct: 414 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 473

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC--HEW 207
           YV+DG   + L +  ++       ++ T+ S L AC     +   ++VH+ I     H++
Sbjct: 474 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDF 533

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            L V NALV+MYGK G +  A+++   M + D V+WN +I  +A      EA + +  ++
Sbjct: 534 -LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIR 592

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           E+G+  N IT  ++ G C    +                                   LK
Sbjct: 593 EKGIPANYITMVSVLGACSAPDDL----------------------------------LK 618

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G  IH   V   +   + V+N+LITMY++C DL  +  +F     KS ITWN+M++   
Sbjct: 619 HGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANA 678

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
           H  C EE+  +F EM   GV  +  + +  L   A +A L+ G++ H  +++   F   L
Sbjct: 679 HHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLG-FESDL 737

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N+ ++MY + G++ +   +      R  +++  LI+ +   G  + A + F EM K 
Sbjct: 738 HVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKL 797

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
             KPDHVT V++LSAC+H GLV EG   ++ MT  +G+FP +EH  C++DL GR+G L+ 
Sbjct: 798 GPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSH 857

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A+  I +MP  P    W +LL AC+IH N  +    AE LLE  P +   YVL +N+ A 
Sbjct: 858 AEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCAT 917

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
           +G W+ +  +R  M    ++K P C+WV   +    F + +  + QA  I   LG L ++
Sbjct: 918 SGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKM 977

Query: 688 MKDAGYVVKEEF 699
            K+AGYV    F
Sbjct: 978 TKEAGYVPDTSF 989



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 154/540 (28%), Positives = 242/540 (44%), Gaps = 50/540 (9%)

Query: 78  AHIIFCCGKVKALA-QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           A +I  C +   +A +G Q+H   +  G+  +  +   LV FY S  L  NA  L E   
Sbjct: 199 ASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 258

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-R 195
               + W  L+  Y   G   E L VY++M+   + G+  T+ +V  +CG + D   G +
Sbjct: 259 DHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQ 318

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           V+   I    E S+ V N+L+SM+  F  V+ A  +FD M E D +SWN MISAYA  GL
Sbjct: 319 VLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGL 378

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
            +E+ + F  M+    E N  T +++   C    N                         
Sbjct: 379 CRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN------------------------- 413

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
                     LK G+ IHG  V+        + N L+T+YS       A ++F+   E+ 
Sbjct: 414 ----------LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERD 463

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +I+WNSM++ Y       +   +  E+ + G   N+VT AS L  C+    L   K  H 
Sbjct: 464 LISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHA 523

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I+  A F++ L++ N+LV MY + G + EAK V   M + D VT+ +LI G+    E  
Sbjct: 524 LII-VAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPN 582

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A+K ++ + +  I  +++TMV+VL ACS    +++          + G          +
Sbjct: 583 EAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSL 642

Query: 556 VDLYGRAGLLNKAKEII----TKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           + +Y + G LN +  I      K P T     W  ++ A   H   G GE A +   E R
Sbjct: 643 ITMYAKCGDLNSSNYIFDGLGNKSPIT-----WNAMVAANAHH---GCGEEALKIFGEMR 694



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/511 (27%), Positives = 246/511 (48%), Gaps = 48/511 (9%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           ++ +   GK LHA  I   +         L+  Y+ F    +A ++ +    R    W+ 
Sbjct: 106 EITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWST 165

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC---GEMMDVDF---GRVVHS 199
           ++S YVR G Y EA+ ++ QM    +  + F   S++ AC   G M D  F   G VV +
Sbjct: 166 MLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKT 225

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            I       ++V  ALV  YG  G V  A++LF++M + + VSW +++  Y+  G   E 
Sbjct: 226 GILG----DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEV 281

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             ++  M++EGV  N  T+ T+   C       G+LE            D V        
Sbjct: 282 LNVYQRMRQEGVSGNQNTFATVTSSC-------GLLE------------DQV-------- 314

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
                   LG ++ G  ++  + +  +V N+LI+M+S    +  A  +F    E  II+W
Sbjct: 315 --------LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISW 366

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+S Y H     ES   F  M     E N  T++S+L +C+ V NL+ G+  H  +++
Sbjct: 367 NAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVK 426

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             + + ++ + N+L+ +Y+ +G+  +A+ VF  M+ RD +++ S++A Y   G+    LK
Sbjct: 427 LGL-DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLK 485

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           +  E+ +     +HVT  + L+ACS+   ++E  K    +  + G    L     +V +Y
Sbjct: 486 ILAELLQMGKVMNHVTFASALAACSNPECLIE-SKIVHALIIVAGFHDFLIVGNALVTMY 544

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           G+ G++ +AK+++  MP  P    W  L+G 
Sbjct: 545 GKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 574



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 140/612 (22%), Positives = 274/612 (44%), Gaps = 52/612 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++  GN  +    + R+R    S +   ++FA +   CG ++    G Q+    I  G E
Sbjct: 272 YSDSGNPGEVLNVYQRMRQEGVSGN--QNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFE 329

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L++ ++SFS    AC++ ++ N    + WN +IS Y   G   E+L  +  M
Sbjct: 330 DSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 389

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           +      ++ T  S+L  C  + ++ +GR +H   +    + ++ + N L+++Y + G+ 
Sbjct: 390 RHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRS 449

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + A  +F  M ERD +SWN+M++ Y   G   +  ++  E+ + G  +N +T+ +     
Sbjct: 450 EDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFAS----- 504

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          L ACS+   L   K +H   +   + ++ 
Sbjct: 505 ------------------------------ALAACSNPECLIESKIVHALIIVAGFHDFL 534

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V NAL+TMY +   +  A  + +   +   +TWN+++ G+   +   E+   ++ +   
Sbjct: 535 IVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREK 594

Query: 406 GVEPNYVTIASILPLCARVAN-LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           G+  NY+T+ S+L  C+   + L+HG   H +I+    F     + NSL+ MYA+ G + 
Sbjct: 595 GIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTG-FESDDYVKNSLITMYAKCGDLN 653

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            +  +FD +  +  +T+ +++A     G G  ALK+F EM    +  D  +    L+A +
Sbjct: 654 SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 713

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           +  ++ EGQ Q   +    G    L      +D+YG+ G ++   +++ + P   +   W
Sbjct: 714 NLAVLEEGQ-QLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSW 771

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLE-----TRPENSGYYVLIANMYAATGCWDKLAKVRT 639
             L+ A   H   G  + A E   E      +P++  +  L++         + LA   +
Sbjct: 772 NILISAFARH---GCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDS 828

Query: 640 CMRDLGVRKIPG 651
             R+ GV   PG
Sbjct: 829 MTREFGV--FPG 838



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 151/325 (46%), Gaps = 38/325 (11%)

Query: 182 LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           LK   E+     G+ +H+ CI       +F  N L++MY KFG ++ AR +FD+M  R+ 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
            SW+TM+S Y   GL++EA  LF +M   GVE N     ++   C R+G           
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMA-------- 212

Query: 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCK 359
                                       G ++HG  V+ G  G+   V  AL+  Y    
Sbjct: 213 --------------------------DEGFQVHGFVVKTGILGDVY-VGTALVHFYGSIG 245

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
            + +A  LF+   + ++++W S++ GY+      E   +++ M + GV  N  T A++  
Sbjct: 246 LVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTS 305

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
            C  + +   G +   +I++   F + + + NSL+ M++    V EA  VFD M+  D +
Sbjct: 306 SCGLLEDQVLGYQVLGHIIQYG-FEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDII 364

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEM 504
           ++ ++I+ Y   G  R +L+ F  M
Sbjct: 365 SWNAMISAYAHHGLCRESLRCFHWM 389



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 2/208 (0%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L   S + +   GK +H   + G         N LI MYS+  ++ HA  +F     ++ 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL-QHGKEFHC 435
            +W++MLSGY  +   EE+  LF +M+  GVEPN   +AS++  C+R   +   G + H 
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 220

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           ++++  +  + + +  +LV  Y   G V  A+ +F+ M   + V++TSL+ GY   G   
Sbjct: 221 FVVKTGILGD-VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPG 279

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSAC 523
             L +++ M +  +  +  T   V S+C
Sbjct: 280 EVLNVYQRMRQEGVSGNQNTFATVTSSC 307


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 195/655 (29%), Positives = 333/655 (50%), Gaps = 52/655 (7%)

Query: 47  FAGRGNLSKAFEAFTRIR---ITAASHDV--VLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           ++  G   +A E +  +R   I   S  V  VL +FA+++        + QG+ LH   +
Sbjct: 182 YSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLL-------VVKQGQGLHGFTL 234

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
             G+    V+   L+  Y  FS   +A  + +   +R  + +N +I  Y++     E++ 
Sbjct: 235 KSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVK 294

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           ++ +    + + D  T  SVL ACG + D+   + +++  + A       V N L+ +Y 
Sbjct: 295 MFLE-NLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYA 353

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G +  AR +F+ M  +D VS                                   WN+
Sbjct: 354 KCGDMITARDVFNSMECKDTVS-----------------------------------WNS 378

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-G 339
           I  G +++G+    ++L   M   E   D +  ++ +   + +  LK GK +H + ++ G
Sbjct: 379 IISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSG 438

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            Y +  +V NALI MY++C ++  +  +F        +TWN+++S             + 
Sbjct: 439 IYIDL-SVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVT 497

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M ++ V P+  T    LP+CA +A  + GKE HC +LR   +   L + N+L+EMY++
Sbjct: 498 TQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFG-YESELQIGNALIEMYSK 556

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  +  VF+ MSRRD VT+T +I  YG+ GEG  AL+ F +M K+ I PD V  +A+
Sbjct: 557 CGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIAL 616

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           + ACSHSGLV +G   FE+M + Y I P +EH+AC+VDL  R+  ++KA+E I  MP  P
Sbjct: 617 IYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEP 676

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
            +++WA++L AC+   +    E  + +++E  P++ GY +L +N YAA   WDK++ +R 
Sbjct: 677 DASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRK 736

Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            +RD  ++K PG +W++ G     F   D S  Q++ I+  L  L  LM   GY+
Sbjct: 737 SVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGYI 791



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 139/511 (27%), Positives = 254/511 (49%), Gaps = 55/511 (10%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYPLPWNLLIS 148
           L + +++HA  I+LGL+ +     KL+  Y+ F    ++  +    S  +    WN +I 
Sbjct: 20  LNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIR 79

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEW 207
            + ++G++ +AL  Y +++  ++  D +T+PSV+KAC  + D + G +V+  I +   E 
Sbjct: 80  AFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFES 139

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
            L+V NALV MY + G +  AR++FD+M  RD VSWN++IS Y+S G ++EA +++ E++
Sbjct: 140 DLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELR 199

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
              +  +  T +++                                   L A +++  +K
Sbjct: 200 NSWIVPDSFTVSSV-----------------------------------LPAFANLLVVK 224

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G+ +HG  ++        V N L+ MY +      A  +F     +  +T+N+M+ GY 
Sbjct: 225 QGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYL 284

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
            L+  EES  +F E      +P+ +T+ S+L  C  + +L   K  + Y+L RA F    
Sbjct: 285 KLEMVEESVKMFLENLDQ-FKPDILTVTSVLCACGHLRDLSLAKYIYNYML-RAGFVLES 342

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N L+++YA+ G +  A+ VF+ M  +D V++ S+I+GY   G+   A+KLF+ M   
Sbjct: 343 TVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIM 402

Query: 508 QIKPDHVTMVAVLSACSH-------SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           + + DH+T + ++S  +         GL   G K         GI+  L     ++D+Y 
Sbjct: 403 EEQADHITYLMLISLSTRLADLKFGKGLHSNGIKS--------GIYIDLSVSNALIDMYA 454

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           + G +  + +I   M  T  +  W T++ AC
Sbjct: 455 KCGEVGDSLKIFNSMG-TLDTVTWNTVISAC 484



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 160/590 (27%), Positives = 281/590 (47%), Gaps = 51/590 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++ F+  G   KA E + ++R +  S D    +F  +I  C  +     G  ++   + +
Sbjct: 78  IRAFSKNGWFPKALEFYGKLRESKVSPDKY--TFPSVIKACAGLFDAEMGDLVYKQILEM 135

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G E +  +   LV  Y+   L + A  + +   +R  + WN LIS Y   G+Y EAL +Y
Sbjct: 136 GFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY 195

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            ++++  I  D+FT  SVL A   ++ V  G+ +H   + +       V+N L++MY KF
Sbjct: 196 HELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKF 255

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            +   ARR+FD+M+ RD+V++NTMI  Y           L +EM EE V           
Sbjct: 256 SRPTDARRVFDEMVVRDSVTYNTMICGY-----------LKLEMVEESV----------- 293

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                    K  LE L + +     + SV     L AC H+  L L K I+   +R  + 
Sbjct: 294 ---------KMFLENLDQFKPDILTVTSV-----LCACGHLRDLSLAKYIYNYMLRAGFV 339

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V+N LI +Y++C D+  A  +F     K  ++WNS++SGY       E+  LF+ M
Sbjct: 340 LESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMM 399

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
                + +++T   ++ L  R+A+L+ GK  H   ++  ++ + L + N+L++MYA+ G+
Sbjct: 400 MIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYID-LSVSNALIDMYAKCGE 458

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           V ++  +F+ M   D VT+ ++I+     G+    L++  +M KN++ PD  T +  L  
Sbjct: 459 VGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPM 518

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C+       G K+       +G   +L+    ++++Y + G L  +  +  +M       
Sbjct: 519 CASLAAKRLG-KEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDV-V 576

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY----YVLIANMYAAT 628
            W  ++ A  ++   G GE A E  ++   E SG      V IA +YA +
Sbjct: 577 TWTGMIYAYGMY---GEGEKALESFVDM--EKSGIVPDSVVFIALIYACS 621



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 156/319 (48%), Gaps = 3/319 (0%)

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           NV  WN+I     + G F   LE   ++R  +   D       + AC+ +   ++G  ++
Sbjct: 70  NVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              +   +     V NAL+ MYSR   L  A  +F     + +++WNS++SGY+     E
Sbjct: 130 KQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  ++ E+  S + P+  T++S+LP  A +  ++ G+  H + L+  + N   ++ N L
Sbjct: 190 EALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGV-NSVSVVNNGL 248

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MY +  +  +A+ VFD M  RD VTY ++I GY        ++K+F E N +Q KPD 
Sbjct: 249 LAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFKPDI 307

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           +T+ +VL AC H   +   +  +  M    G   +      ++D+Y + G +  A+++  
Sbjct: 308 LTVTSVLCACGHLRDLSLAKYIYNYMLRA-GFVLESTVKNILIDVYAKCGDMITARDVFN 366

Query: 574 KMPYTPTSAMWATLLGACQ 592
            M    T +  + + G  Q
Sbjct: 367 SMECKDTVSWNSIISGYIQ 385


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/424 (38%), Positives = 248/424 (58%), Gaps = 3/424 (0%)

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE-TYLDSVATVIGLGACSHVGALKLGKE 331
           +NV  WNT+  G    GN    + L   MR       D+      L A   +  ++LG+ 
Sbjct: 83  INVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGET 142

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IH   +R  +G    V+N+L+ +Y+ C D+  AY +F    EK ++ WNS+++G+     
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
            EE+  L+ EM   G++P+  TI S+L  CA++  L  GK FH Y+++  +   +L   N
Sbjct: 203 PEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGL-TRNLHSSN 261

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIK 510
            L+++YAR G+V EAK++FD M  ++ V++TSLI G  + G G+ A++LF+ M +K  + 
Sbjct: 262 VLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLL 321

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           P  +T V +L ACSH G+V EG + F RM+  Y I P++EHF CMVDL  RAG + KA E
Sbjct: 322 PCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYE 381

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
            I KMP  P   +W TLLGAC +H ++ + E A  K+L+  P +SG YVL++NMYA+   
Sbjct: 382 YILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQR 441

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           W  + K+R  M   GVRK+PG + V+ GN    FL+ D S+ Q   IY  L  +T+ ++ 
Sbjct: 442 WSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRL 501

Query: 691 AGYV 694
            GYV
Sbjct: 502 EGYV 505



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 211/449 (46%), Gaps = 56/449 (12%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL-------YNNACFLVENSNIRY 139
           V +L + +Q+HA +I  G+  +   + K + FY   SL       Y +  F    S I  
Sbjct: 27  VSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYL-VSLPSPPPMSYAHKVF----SKIEK 81

Query: 140 PLP---WNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           P+    WN LI  Y   G    A+ +Y++M+ S  +  D  TYP +LKA G+M DV  G 
Sbjct: 82  PINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGE 141

Query: 196 VVHSCIDACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS +      SL +V N+L+ +Y   G V  A ++FDKM E+D V+WN++I+ +A  G
Sbjct: 142 TIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG 201

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA  L+ EM  +G++ +  T                ++ LLS               
Sbjct: 202 KPEEALALYTEMDLKGIKPDGFT----------------IVSLLS--------------- 230

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
               AC+ +GAL LGK  H   ++       +  N L+ +Y+RC  +  A  LF    +K
Sbjct: 231 ----ACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK 286

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + ++W S++ G       +E+  LF+ M  + G+ P  +T   IL  C+    ++ G E+
Sbjct: 287 NSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEY 346

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYGIQG 492
              +         +  +  +V++ AR+G+V +A + +  +  + + V + +L+    + G
Sbjct: 347 FRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHG 406

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           +  +A      M   Q++P+H     +LS
Sbjct: 407 DSDLA--ELARMKILQLEPNHSGDYVLLS 433



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 101/262 (38%), Gaps = 39/262 (14%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
            +  FA  G   +A   +T + +     D    +   ++  C K+ AL  GK+ H   I 
Sbjct: 193 VINGFAENGKPEEALALYTEMDLKGIKPDGF--TIVSLLSACAKIGALTLGKRFHVYMIK 250

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           +GL +N      L+  YA       A  L +    +  + W  LI     +G   EA+ +
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIEL 310

Query: 163 YKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGK 221
           +K M+S+  +     T+  +L AC     V  G                           
Sbjct: 311 FKNMESKEGLLPCEITFVGILYACSHCGMVKEG--------------------------- 343

Query: 222 FGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
               +  RR+ ++  +E     +  M+   A  G  K+A++  ++M    ++ NV+ W T
Sbjct: 344 ---FEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMP---MQPNVVIWRT 397

Query: 281 IAGGCLRTGNFKGVLELLSRMR 302
           + G C   G+    L  L+RM+
Sbjct: 398 LLGACTVHGDSD--LAELARMK 417


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/496 (34%), Positives = 272/496 (54%), Gaps = 34/496 (6%)

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           +D   +   F+   L++M+ +   VD AR++FDK  +R    WN +  A A  G   +  
Sbjct: 96  VDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVL 155

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
           +L+  M   GV  +  T+  +   C+ +       E L                      
Sbjct: 156 ELYPRMNMMGVSSDRFTYTYLLKACVAS-------ECL---------------------- 186

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
             V  L+ GKEIH   +R  YG + +V   L+ MY+R   + +A  +F     K++++W+
Sbjct: 187 --VSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWS 244

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVE--PNYVTIASILPLCARVANLQHGKEFHCYIL 438
           +M++ Y       E+  LFREM  +  +  PN VT+ S+L  CA  A L+ GK  H YIL
Sbjct: 245 AMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYIL 304

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           RR + +  L + ++L+ MYAR GK+   + +FD M ++D V + SLI+ YG+ G GR A+
Sbjct: 305 RRGL-DSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAI 363

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           K+FEEM  +   P H++ ++VL ACSH+GLV EG+K FE M   +GI P +EH+ACMVDL
Sbjct: 364 KIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDL 423

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRA  L++A +II  +   P   +W +LLGAC+IH +  + E A+++L +  P N+G Y
Sbjct: 424 LGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNY 483

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL+A++YA    WD++ +V+  +    ++K+PG +W++       F   D  N Q ++++
Sbjct: 484 VLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLH 543

Query: 679 PLLGGLTELMKDAGYV 694
            LL  L+  MK  GY 
Sbjct: 544 ALLVNLSNEMKQRGYT 559



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 209/477 (43%), Gaps = 58/477 (12%)

Query: 2   PPSSSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFT 61
           PPSS R   + LSVS    F P       NN H+        ++    +GNL +A     
Sbjct: 13  PPSSPRYSTSKLSVSSFS-FNPSTPPNS-NNNHL--------IQSLCKQGNLKQA----- 57

Query: 62  RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS 121
            + + +   +    +   +I    +  +L+    +H   +  G +++P L  KL+  ++ 
Sbjct: 58  -LYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSE 116

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
               +NA  + + +  R    WN L       G   + L +Y +M    +  D FTY  +
Sbjct: 117 LDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYL 176

Query: 182 LKAC--GEMMDVDF---GRVVHSCIDACHEWSLFVH--NALVSMYGKFGQVDVARRLFDK 234
           LKAC   E + V F   G+ +H+ I   H +   VH    L+ MY +FG V  A  +FD+
Sbjct: 177 LKACVASECL-VSFLQKGKEIHAHI-LRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDE 234

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M  ++ VSW+ MI+ YA  G   EA +LF EM                            
Sbjct: 235 MPVKNVVSWSAMIACYAKNGKPYEALELFREMM--------------------------- 267

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
                 + T ++  +SV  V  L AC+   AL+ GK IH   +R        V +ALITM
Sbjct: 268 ------LNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITM 321

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y+RC  L    ++F    +K ++ WNS++S Y       ++  +F EM   G  P++++ 
Sbjct: 322 YARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISF 381

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            S+L  C+    ++ GK+    +++       +  +  +V++  R+ ++ EA  + +
Sbjct: 382 ISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIE 438



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 185/388 (47%), Gaps = 62/388 (15%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGK----VKALAQGKQLHACAIA 102
            AGRGN     E + R+ +   S D    ++ +++  C      V  L +GK++HA  + 
Sbjct: 147 LAGRGN--DVLELYPRMNMMGVSSDRF--TYTYLLKACVASECLVSFLQKGKEIHAHILR 202

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
            G   +  ++  L+  YA F   + A  + +   ++  + W+ +I+ Y ++G   EAL +
Sbjct: 203 HGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALEL 262

Query: 163 YKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMY 219
           +++M   +     ++ T  SVL+AC     ++ G+++H+ I     +  L V +AL++MY
Sbjct: 263 FREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMY 322

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            + G+++  + +FD+M ++D V WN++IS+Y   G  ++A ++F EM + G   + I++ 
Sbjct: 323 ARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFI 382

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           ++ G                                   ACSH G ++ GK++  S V+ 
Sbjct: 383 SVLG-----------------------------------ACSHTGLVEEGKKLFESMVKE 407

Query: 340 CYGEYENVRN--ALITMYSRCKDLRH-AYILFKMTAEKSIITWNSMLSG---YTHLDCAE 393
            +G   +V +   ++ +  R   L   A I+  +  E     W S+L     + H++ AE
Sbjct: 408 -HGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAE 466

Query: 394 ESAFLFREMFRSGVEP----NYVTIASI 417
            ++   + +F+  +EP    NYV +A I
Sbjct: 467 RAS---KRLFK--LEPTNAGNYVLLADI 489


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 189/632 (29%), Positives = 320/632 (50%), Gaps = 42/632 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++  G + +AF  F  +R        V  +   ++F    V  LA  + LH  AI  G  
Sbjct: 145 YSRTGRVPEAFSLFDEMRRQGIQPSSV--TMLSLLF---GVSELAHVQCLHGSAILYGFM 199

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  L   +++ Y        +  L +  + R  + WN L+S Y + G+  E L + K M
Sbjct: 200 SDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTM 259

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQV 225
           + +    D  T+ SVL       ++  GR +H  I   C +    V  +L+ MY K G +
Sbjct: 260 RIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNI 319

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D+A R+F++ L++D V W  MIS     G   +A  +F +M + GV+ +  T        
Sbjct: 320 DIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTAT-------- 371

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                    +A+VI   AC+ +G+  LG  +HG   R       
Sbjct: 372 -------------------------MASVIT--ACAQLGSYNLGTSVHGYMFRHELPMDI 404

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
             +N+L+TM+++C  L  + I+F    ++++++WN+M++GY       ++ FLF EM   
Sbjct: 405 ATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSD 464

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
              P+ +TI S+L  CA    L  GK  H +++R  +    +L+  SLV+MY + G +  
Sbjct: 465 HQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGL-RPCILVDTSLVDMYCKCGDLDI 523

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+  F+ M   D V+++++I GYG  G+G  AL+ + +  ++ +KP+HV  ++VLS+CSH
Sbjct: 524 AQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSH 583

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           +GLV +G   +E MT  +GI P LEH AC+VDL  RAG + +A  +  K    P   +  
Sbjct: 584 NGLVEQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSDPVLDVLG 643

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            +L AC+ + N  +G+  A  +L  +P ++G +V +A+ YA+   W+++ +  T MR LG
Sbjct: 644 IILDACRANGNNELGDTIANDILMLKPMDAGNFVQLAHCYASINKWEEVGEAWTHMRSLG 703

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           ++KIPG +++D     + F  D  S+ Q QEI
Sbjct: 704 LKKIPGWSFIDIHGTITTFFTDHNSHPQFQEI 735



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/515 (27%), Positives = 253/515 (49%), Gaps = 41/515 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  +   + G  LH   +  GL  +  +   L+ FYA F   + A  + +  
Sbjct: 71  TFPSLLKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDFM 130

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  +PW  +I  Y R G   EA  ++ +M+ + I+  + T  S+L    E+  V   +
Sbjct: 131 PERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHV---Q 187

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H S I       + + N+++SMYGK   ++ +R+LFD M +RD VSWN+++SAYA  G
Sbjct: 188 CLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIG 247

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              E   L   M+ +G E +  T+ ++                                 
Sbjct: 248 YICEVLLLLKTMRIQGFEPDPQTFGSV--------------------------------- 274

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L   +  G LKLG+ +HG  +R C+    +V  +LI MY +  ++  A+ +F+ + +K
Sbjct: 275 --LSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDK 332

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            ++ W +M+SG      A+++  +FR+M + GV+ +  T+AS++  CA++ +   G   H
Sbjct: 333 DVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVH 392

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            Y+ R  +  + +   NSLV M+A+ G + ++  VFD M++R+ V++ ++I GY   G  
Sbjct: 393 GYMFRHELPMD-IATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYV 451

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL LF EM  +   PD +T+V++L  C+ +G +  G K         G+ P +     
Sbjct: 452 CKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLG-KWIHSFVIRNGLRPCILVDTS 510

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           +VD+Y + G L+ A+    +MP     +  A ++G
Sbjct: 511 LVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVG 545



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 200/443 (45%), Gaps = 59/443 (13%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           +N +I+ +   G + + L  Y  M    +  D +T+PS+LKAC  +     G  +H  I 
Sbjct: 37  FNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRIL 96

Query: 203 ACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                   ++ ++L++ Y KFG  DVAR++FD M ER                       
Sbjct: 97  VSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPER----------------------- 133

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV---ATVIGLG 318
                       NV+ W +I G   RTG       L   MR Q     SV   + + G+ 
Sbjct: 134 ------------NVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVS 181

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
             +HV  L      HGSA+   +    N+ N++++MY +C+++ ++  LF    ++ +++
Sbjct: 182 ELAHVQCL------HGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVS 235

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WNS++S Y  +    E   L + M   G EP+  T  S+L + A    L+ G+  H  IL
Sbjct: 236 WNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQIL 295

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R   F+    +  SL+ MY + G +  A  +F+    +D V +T++I+G    G    AL
Sbjct: 296 RTC-FDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKAL 354

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE------HF 552
            +F +M K  +K    TM +V++AC+  G        +   TS++G   + E        
Sbjct: 355 AVFRQMLKFGVKSSTATMASVITACAQLG-------SYNLGTSVHGYMFRHELPMDIATQ 407

Query: 553 ACMVDLYGRAGLLNKAKEIITKM 575
             +V ++ + G L+++  +  KM
Sbjct: 408 NSLVTMHAKCGHLDQSSIVFDKM 430


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 187/612 (30%), Positives = 306/612 (50%), Gaps = 38/612 (6%)

Query: 90   LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
            L  G+ +H   + LGL+ N  +   L+T Y+      +A  + +    R  + WN +++ 
Sbjct: 1064 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 1123

Query: 150  YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEW 207
            YV+DG   + L +  ++       ++ T+ S L AC     +   ++VH+ I     H++
Sbjct: 1124 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDF 1183

Query: 208  SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
             L V NALV+MYGK G +  A+++   M + D V+WN +I  +A      EA + +  ++
Sbjct: 1184 -LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIR 1242

Query: 268  EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
            E+G+  N IT  ++ G C    +                                   LK
Sbjct: 1243 EKGIPANYITMVSVLGACSAPDDL----------------------------------LK 1268

Query: 328  LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
             G  IH   V   +   + V+N+LITMY++C DL  +  +F     KS ITWN+M++   
Sbjct: 1269 HGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANA 1328

Query: 388  HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
            H  C EE+  +F EM   GV  +  + +  L   A +A L+ G++ H  +++   F   L
Sbjct: 1329 HHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLG-FESDL 1387

Query: 448  LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
             + N+ ++MY + G++ +   +      R  +++  LI+ +   G  + A + F EM K 
Sbjct: 1388 HVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKL 1447

Query: 508  QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
              KPDHVT V++LSAC+H GLV EG   ++ MT  +G+FP +EH  C++DL GR+G L+ 
Sbjct: 1448 GPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSH 1507

Query: 568  AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
            A+  I +MP  P    W +LL AC+IH N  +    AE LLE  P +   YVL +N+ A 
Sbjct: 1508 AEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCAT 1567

Query: 628  TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
            +G W+ +  +R  M    ++K P C+WV   +    F + +  + QA  I   LG L ++
Sbjct: 1568 SGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKM 1627

Query: 688  MKDAGYVVKEEF 699
             K+AGYV    F
Sbjct: 1628 TKEAGYVPDTSF 1639



 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 189/616 (30%), Positives = 309/616 (50%), Gaps = 40/616 (6%)

Query: 52  NLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
           NL +  EA   +       D  L  +  I+  C   KA  QG  +H   I  G   +  L
Sbjct: 10  NLGRLAEALKLLSSNPTRLDPSL--YLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHL 67

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
             KL+ FY        A  + +    R  + W  ++S Y ++G + +A  ++  M+   +
Sbjct: 68  NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV 127

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARR 230
           + + FTY S L+AC  +  +D G  V  CI       +LFV +ALV  + K G+++ A  
Sbjct: 128 KANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASY 187

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LF  M+ERD VSWN MI  YA +G   ++F +F  M   G+  +  T  ++         
Sbjct: 188 LFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSV--------- 238

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                                     L A +  G L +  +IHG   +  YG Y+ V   
Sbjct: 239 --------------------------LRASAEGGGLIIANQIHGIITQLGYGSYDIVTGL 272

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFREMFRSGVEP 409
           LI  Y++   LR A  L K   +K + +  ++++GY H       A  LF+EM +  +  
Sbjct: 273 LINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGM 332

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + V + S+L +CA +A+   G + H + L+     + + + N+L++MYA+SG++ +AK  
Sbjct: 333 DDVILCSMLNICANLASFALGTQIHAFALKYQPSYD-VAMGNALIDMYAKSGEIEDAKRA 391

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           FD M  ++ +++TSLI+GY   G G +A+ L+++M     KP+ VT +++L ACSH+GL 
Sbjct: 392 FDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLT 451

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG + F  M + Y I P+ EH++CMVDL+ R GLL +A  ++ K+     +++W  +LG
Sbjct: 452 AEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILG 511

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           A  I+    +G+ AA  L   +PENS  YV++A++Y+A G WD   K+R  M +   +K 
Sbjct: 512 ASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKN 571

Query: 650 PGCAWVDAGNVFSPFL 665
            G ++  A     P L
Sbjct: 572 AGYSFFQATKKSIPLL 587



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 151/536 (28%), Positives = 241/536 (44%), Gaps = 42/536 (7%)

Query: 78   AHIIFCCGKVKALA-QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            A +I  C +   +A +G Q+H   +  G+  +  +   LV FY S  L  NA  L E   
Sbjct: 849  ASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 908

Query: 137  IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-R 195
                + W  L+  Y   G   E L VY++M+   + G+  T+ +V  +CG + D   G +
Sbjct: 909  DHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQ 968

Query: 196  VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            V+   I    E S+ V N+L+SM+  F  V+ A  +FD M E D +SWN MISAYA  GL
Sbjct: 969  VLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGL 1028

Query: 256  WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             +E+ + F  M+    E N  T +++   C    N                         
Sbjct: 1029 CRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN------------------------- 1063

Query: 316  GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
                      LK G+ IHG  V+        + N L+T+YS       A ++F+   E+ 
Sbjct: 1064 ----------LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERD 1113

Query: 376  IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
            +I+WNSM++ Y       +   +  E+ + G   N+VT AS L  C+    L   K  H 
Sbjct: 1114 LISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHA 1173

Query: 436  YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
             I+  A F++ L++ N+LV MY + G + EAK V   M + D VT+ +LI G+    E  
Sbjct: 1174 LII-VAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPN 1232

Query: 496  VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
             A+K ++ + +  I  +++TMV+VL ACS    +++          + G          +
Sbjct: 1233 EAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSL 1292

Query: 556  VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
            + +Y + G LN +  I   +    +   W  ++ A   H   G GE A +   E R
Sbjct: 1293 ITMYAKCGDLNSSNYIFDGLG-NKSPITWNAMVAANAHH---GCGEEALKIFGEMR 1344



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/511 (27%), Positives = 246/511 (48%), Gaps = 48/511 (9%)

Query: 86   KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
            ++ +   GK LHA  I   +         L+  Y+ F    +A ++ +    R    W+ 
Sbjct: 756  EITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWST 815

Query: 146  LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC---GEMMDVDF---GRVVHS 199
            ++S YVR G Y EA+ ++ QM    +  + F   S++ AC   G M D  F   G VV +
Sbjct: 816  MLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKT 875

Query: 200  CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
             I       ++V  ALV  YG  G V  A++LF++M + + VSW +++  Y+  G   E 
Sbjct: 876  GILG----DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEV 931

Query: 260  FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
              ++  M++EGV  N  T+ T+   C       G+LE            D V        
Sbjct: 932  LNVYQRMRQEGVSGNQNTFATVTSSC-------GLLE------------DQV-------- 964

Query: 320  CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
                    LG ++ G  ++  + +  +V N+LI+M+S    +  A  +F    E  II+W
Sbjct: 965  --------LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISW 1016

Query: 380  NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
            N+M+S Y H     ES   F  M     E N  T++S+L +C+ V NL+ G+  H  +++
Sbjct: 1017 NAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVK 1076

Query: 440  RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              + + ++ + N+L+ +Y+ +G+  +A+ VF  M+ RD +++ S++A Y   G+    LK
Sbjct: 1077 LGL-DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLK 1135

Query: 500  LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            +  E+ +     +HVT  + L+ACS+   ++E  K    +  + G    L     +V +Y
Sbjct: 1136 ILAELLQMGKVMNHVTFASALAACSNPECLIE-SKIVHALIIVAGFHDFLIVGNALVTMY 1194

Query: 560  GRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G+ G++ +AK+++  MP  P    W  L+G 
Sbjct: 1195 GKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 1224



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 140/612 (22%), Positives = 274/612 (44%), Gaps = 52/612 (8%)

Query: 47   FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
            ++  GN  +    + R+R    S +   ++FA +   CG ++    G Q+    I  G E
Sbjct: 922  YSDSGNPGEVLNVYQRMRQEGVSGNQ--NTFATVTSSCGLLEDQVLGYQVLGHIIQYGFE 979

Query: 107  KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
             +  +   L++ ++SFS    AC++ ++ N    + WN +IS Y   G   E+L  +  M
Sbjct: 980  DSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 1039

Query: 167  QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
            +      ++ T  S+L  C  + ++ +GR +H   +    + ++ + N L+++Y + G+ 
Sbjct: 1040 RHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRS 1099

Query: 226  DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            + A  +F  M ERD +SWN+M++ Y   G   +  ++  E+ + G  +N +T+ +     
Sbjct: 1100 EDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFAS----- 1154

Query: 286  LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                           L ACS+   L   K +H   +   + ++ 
Sbjct: 1155 ------------------------------ALAACSNPECLIESKIVHALIIVAGFHDFL 1184

Query: 346  NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
             V NAL+TMY +   +  A  + +   +   +TWN+++ G+   +   E+   ++ +   
Sbjct: 1185 IVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREK 1244

Query: 406  GVEPNYVTIASILPLCARVAN-LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G+  NY+T+ S+L  C+   + L+HG   H +I+    F     + NSL+ MYA+ G + 
Sbjct: 1245 GIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTG-FESDDYVKNSLITMYAKCGDLN 1303

Query: 465  EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
             +  +FD +  +  +T+ +++A     G G  ALK+F EM    +  D  +    L+A +
Sbjct: 1304 SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 1363

Query: 525  HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
            +  ++ EGQ Q   +    G    L      +D+YG+ G ++   +++ + P   +   W
Sbjct: 1364 NLAVLEEGQ-QLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSW 1421

Query: 585  ATLLGACQIHRNTGIGEWAAEKLLE-----TRPENSGYYVLIANMYAATGCWDKLAKVRT 639
              L+ A   H   G  + A E   E      +P++  +  L++         + LA   +
Sbjct: 1422 NILISAFARH---GCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDS 1478

Query: 640  CMRDLGVRKIPG 651
              R+ GV   PG
Sbjct: 1479 MTREFGV--FPG 1488



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 151/325 (46%), Gaps = 38/325 (11%)

Query: 182  LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
            LK   E+     G+ +H+ CI       +F  N L++MY KFG ++ AR +FD+M  R+ 
Sbjct: 751  LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 241  VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
             SW+TM+S Y   GL++EA  LF +M   GVE N     ++   C R+G           
Sbjct: 811  ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMA-------- 862

Query: 301  MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCK 359
                                        G ++HG  V+ G  G+   V  AL+  Y    
Sbjct: 863  --------------------------DEGFQVHGFVVKTGILGDVY-VGTALVHFYGSIG 895

Query: 360  DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
             + +A  LF+   + ++++W S++ GY+      E   +++ M + GV  N  T A++  
Sbjct: 896  LVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTS 955

Query: 420  LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
             C  + +   G +   +I++   F + + + NSL+ M++    V EA  VFD M+  D +
Sbjct: 956  SCGLLEDQVLGYQVLGHIIQYG-FEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDII 1014

Query: 480  TYTSLIAGYGIQGEGRVALKLFEEM 504
            ++ ++I+ Y   G  R +L+ F  M
Sbjct: 1015 SWNAMISAYAHHGLCRESLRCFHWM 1039



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 2/204 (0%)

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           S + +   GK +H   + G         N LI MYS+  ++ HA  +F     ++  +W+
Sbjct: 755 SEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWS 814

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL-QHGKEFHCYILR 439
           +MLSGY  +   EE+  LF +M+  GVEPN   +AS++  C+R   +   G + H ++++
Sbjct: 815 TMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVK 874

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             +  + + +  +LV  Y   G V  A+ +F+ M   + V++TSL+ GY   G     L 
Sbjct: 875 TGILGD-VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLN 933

Query: 500 LFEEMNKNQIKPDHVTMVAVLSAC 523
           +++ M +  +  +  T   V S+C
Sbjct: 934 VYQRMRQEGVSGNQNTFATVTSSC 957


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 191/659 (28%), Positives = 332/659 (50%), Gaps = 39/659 (5%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R++ +  ++ +A RG   +A E F R++     H+V       I+     + A      +
Sbjct: 113 RVSFVTLMQGYALRGEFEEALELFRRLQ--REGHEVNHFVLTTILKVLVTMDAPGLACGI 170

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           HACA  LG ++N  +   L+  Y+      +A  + +    +  + W  ++S Y  +   
Sbjct: 171 HACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIP 230

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNAL 215
             AL  + +M+    + + F   S LKA   +     G+ +H C +   ++    V  AL
Sbjct: 231 EYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGAL 290

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MY K G ++ A  +F+ +   D + W+ +IS YA     ++AF++F+ M    V  N 
Sbjct: 291 LDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNE 350

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
            +               GVL+                      AC+++  L+LG++IH  
Sbjct: 351 FS-------------LSGVLQ----------------------ACANIAFLELGEQIHNL 375

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           A++  Y     V NAL+ MY++C+++ ++  +F    + + ++WN+++ GY     AE++
Sbjct: 376 AIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDA 435

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             +F EM  + +    VT +S+L  CA  ++++H  + H  I  ++ FN   ++ NSL++
Sbjct: 436 LSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLI-EKSTFNNDTIVCNSLID 494

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
            YA+ G + +A  VF+ +   D V++ S+I+ Y + G    AL+LF+ MNK+ IK + VT
Sbjct: 495 TYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVT 554

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            V++LS C  +GLV +G   F  M   + I P +EH+ C+V L GRAG L  A + I  +
Sbjct: 555 FVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDI 614

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
           P TP+  +W  LL +C +H+N  +G +AAEK+L+  P +   YVL++NMYAA G  D++A
Sbjct: 615 PSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVA 674

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
             R  MR++GV+K  G +WV+       F V    +   + I  +L  L       GYV
Sbjct: 675 LWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYV 733



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 242/537 (45%), Gaps = 65/537 (12%)

Query: 74  LDSFAHIIF---CCGKVKALAQGKQLHACAIALG--LEKNPVLVPKLVTFYASFSLYNNA 128
           LDS+A   F   C  +  A A G+ +HA  +  G   + +      L+ FYA       A
Sbjct: 43  LDSYACARFLQRCIARGDARA-GRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATA 101

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             L +    R  + +  L+  Y   G + EAL +++++Q      ++F   ++LK    M
Sbjct: 102 RRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTM 161

Query: 189 MDVDFGRVVHSCIDAC---HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
                   +H+C  AC   H+ + FV  AL+  Y   G V  AR +FD ++ +DAV+W  
Sbjct: 162 DAPGLACGIHAC--ACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTA 219

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVN--VITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           M+S Y+   + + A   F +M+  G + N  V+T    A  CL +               
Sbjct: 220 MVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSA-------------- 265

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
                                   LGK IHG +V+  Y    +V  AL+ MY++C D+  
Sbjct: 266 -----------------------LLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIED 302

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFREMFRSGVEPNYVTIASILPLCA 422
           A+ +F+M     +I W+ ++S Y    C  E AF +F  M RS V PN  +++ +L  CA
Sbjct: 303 AHAIFEMIPHDDVILWSFLISRYAQ-SCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACA 361

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            +A L+ G++ H   ++   +   L + N+L++MYA+   +  +  +F  +   +EV++ 
Sbjct: 362 NIAFLELGEQIHNLAIKLG-YESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWN 420

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV---VEGQKQFERM 539
           ++I GY   G    AL +F EM    +    VT  +VL AC+++  +   V+     E+ 
Sbjct: 421 TIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKS 480

Query: 540 TSIYGIFPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           T     F   +   C  ++D Y + G +  A ++   +      + W +++ A  +H
Sbjct: 481 T-----FNN-DTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVS-WNSIISAYALH 530



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 203/442 (45%), Gaps = 46/442 (10%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARR 230
           D++     L+ C    D   GR VH+ +       +   F  N L++ Y K G +  ARR
Sbjct: 44  DSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARR 103

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           LFD M ER+ VS+ T++  YA +G ++EA +LF  +Q EG EVN     TI         
Sbjct: 104 LFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTI--------- 154

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
               L++L  M       D+     G+ AC    A KLG +      R  +     V  A
Sbjct: 155 ----LKVLVTM-------DAPGLACGIHAC----ACKLGHD------RNAF-----VGTA 188

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI  YS C  + HA  +F     K  +TW +M+S Y+  D  E +   F +M  +G +PN
Sbjct: 189 LIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPN 248

Query: 411 YVTIASILPLCARVANLQHGKEFH-CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
              + S L     +++   GK  H C +  + +++    +  +L++MYA+ G + +A ++
Sbjct: 249 PFVLTSALKAAVCLSSALLGKGIHGCSV--KTLYDTEPHVGGALLDMYAKCGDIEDAHAI 306

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F+++   D + ++ LI+ Y    +   A ++F  M ++ + P+  ++  VL AC++   +
Sbjct: 307 FEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFL 366

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
             G+ Q   +    G   +L     ++D+Y +   +  + EI + +      +    ++G
Sbjct: 367 ELGE-QIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVG 425

Query: 590 ACQIHRNTGIGEWAAEKLLETR 611
            CQ    +G  E A     E R
Sbjct: 426 YCQ----SGFAEDALSVFHEMR 443


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 288/523 (55%), Gaps = 38/523 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y S++ AC +  ++   R +HS +         F+ N+L+ MY K G V  AR +FD + 
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            RD VSW  +I+ YA   +  EA                                 G+L 
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEAL--------------------------------GLLP 152

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
            + R R + +     + +   GAC   G   +G+++H  AV+    E   V +AL+ MY+
Sbjct: 153 DMLRARFRPSGFTFTSFLKAAGAC---GGRGIGEQMHALAVKYNLDEDVYVGSALLDMYA 209

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           RC+ +  A  +F     K+ ++WN++++G+      E +   F EM R+G    + T +S
Sbjct: 210 RCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSS 269

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +    AR+  L+ G+  H ++++         + N+++ MYA+SG + +A+ VFD + +R
Sbjct: 270 VFSALARIGALEQGRWVHAHMIKSGQ-KLTAFVANTILGMYAKSGSMVDARKVFDRVDQR 328

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D VT+ +++  +   G G+ A+  FEE+ K  I+ + +T ++VL+ACSH GLV EG++ F
Sbjct: 329 DLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYF 388

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           + M   Y + P+++H+   VDL GRAGLL +A   + KMP  PT+A+W  LLGAC++H+N
Sbjct: 389 DMMKD-YNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKN 447

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             IG++AA+ + E  PE++G  VL+ N+YA+TG WD  A+VR  M+  GV+K P C+WV+
Sbjct: 448 AKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVE 507

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
             N    F+ DD+++ +++EIY +   +   +K AGYV   ++
Sbjct: 508 IENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDY 550



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 174/388 (44%), Gaps = 37/388 (9%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           II  C + K LA  + +H+      L  +  L+  L+  Y      ++A  + +    R 
Sbjct: 68  IITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRD 127

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  LI+ Y ++   AEAL +   M   R R   FT+ S LKA G       G  +H+
Sbjct: 128 VVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHA 187

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +    +  ++V +AL+ MY +  Q+D+A R+FD +  ++ VSWN +I+ +A KG  + 
Sbjct: 188 LAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGET 247

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
               F EMQ  G      T++++                                     
Sbjct: 248 TLMKFAEMQRNGFGATHFTYSSV-----------------------------------FS 272

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           A + +GAL+ G+ +H   ++        V N ++ MY++   +  A  +F    ++ ++T
Sbjct: 273 ALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVT 332

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+ML+ +      +E+   F E+ + G++ N +T  S+L  C+    ++ GK++   ++
Sbjct: 333 WNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFD-MM 391

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           +       +  + S V++  R+G + EA
Sbjct: 392 KDYNVEPEIDHYVSFVDLLGRAGLLKEA 419



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 147/311 (47%), Gaps = 39/311 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +   G       G+Q+HA A+   L+++  +   L+  YA     + A  + +  
Sbjct: 165 TFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWL 224

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + WN LI+ + R G     L  + +MQ       +FTY SV  A   +  ++ GR
Sbjct: 225 DSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGR 284

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  I +  + + FV N ++ MY K G +  AR++FD++ +RD V+WNTM++A+A  G
Sbjct: 285 WVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYG 344

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L KEA   F E+++ G+++N IT+ ++                                 
Sbjct: 345 LGKEAVAHFEEIRKYGIQLNQITFLSV--------------------------------- 371

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYI-LFKMTA 372
             L ACSH G +K GK+ +   ++    E E +   + + +  R   L+ A I +FKM  
Sbjct: 372 --LTACSHGGLVKEGKQ-YFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPM 428

Query: 373 EKSIITWNSML 383
           E +   W ++L
Sbjct: 429 EPTAAVWGALL 439


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 200/609 (32%), Positives = 315/609 (51%), Gaps = 21/609 (3%)

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H+ A  L      +L   L +F+AS   +++  F   N          +++    R   +
Sbjct: 3   HSNARKLTTLHGFILKRNLSSFHASLKRFSDKKFFNPNHE-----DGGVVVERLCRANRF 57

Query: 157 AEA---LCVYK------QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HE 206
            EA   LC  K      Q+  R  +    TY ++++ C +   ++ G+ VH  I      
Sbjct: 58  GEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFV 117

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
             + + N L+ MY K G +  AR++FD+M  RD  SWN M++ YA  GL +EA +LF EM
Sbjct: 118 PGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEM 177

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV-IGLGACSHVGA 325
            E+    +  +W  +  G ++    +  L L S M+       ++ TV I + A + V  
Sbjct: 178 TEK----DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKC 233

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           ++ GKEIHG  VR      E + ++L+ MY +C  +  A  +F    EK +++W SM+  
Sbjct: 234 IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDR 293

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           Y       E   LF E+  S   PN  T A +L  CA +   + GK+ H Y + R  F+ 
Sbjct: 294 YFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGY-MTRVGFDP 352

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           +    +SLV+MY + G +  AK V D   + D V++TSLI G    G+   ALK F+ + 
Sbjct: 353 YSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           K+  KPDHVT V VLSAC+H+GLV +G + F  +T  + +    +H+ C+VDL  R+G  
Sbjct: 413 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRF 472

Query: 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625
            + K +I++MP  P+  +WA++LG C  + N  + E AA++L +  PEN   YV +AN+Y
Sbjct: 473 EQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIY 532

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           AA G W++  K+R  M+++GV K PG +W +       F+  DTS+    +I   L  L 
Sbjct: 533 AAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELR 592

Query: 686 ELMKDAGYV 694
           + MK+ GYV
Sbjct: 593 KKMKEEGYV 601



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 137/571 (23%), Positives = 241/571 (42%), Gaps = 89/571 (15%)

Query: 16  SQLEKFIPKKWKQPINN------EHIMRINLL-ETLKDFAGRGNLSKAFEAFTRIRITAA 68
           + L++F  KK+  P +       E + R N   E +    G+  L +A +   R +   A
Sbjct: 26  ASLKRFSDKKFFNPNHEDGGVVVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPA 85

Query: 69  SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL------------- 115
           S      ++ ++I  C + +AL +GK++H      G     V+  +L             
Sbjct: 86  S------TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDA 139

Query: 116 ------------------VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
                             V  YA   L   A  L +    +    W  +++ YV+     
Sbjct: 140 RKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPE 199

Query: 158 EALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNAL 215
           EAL +Y  MQ     R + FT    + A   +  +  G+ +H   + A  +    + ++L
Sbjct: 200 EALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSL 259

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           + MYGK G +D AR +FDK++E+D VSW +MI  Y     W+E F LF E+         
Sbjct: 260 MDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSEL--------- 310

Query: 276 ITWNTIAGGCLRTG--NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                  G C R     F GV                      L AC+ +   +LGK++H
Sbjct: 311 ------VGSCERPNEYTFAGV----------------------LNACADLTTEELGKQVH 342

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G   R  +  Y    ++L+ MY++C ++  A  +     +  +++W S++ G       +
Sbjct: 343 GYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPD 402

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+   F  + +SG +P++VT  ++L  C     ++ G EF   I  +   +     +  L
Sbjct: 403 EALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCL 462

Query: 454 VEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           V++ ARSG+  + KSV   M  +  +  + S++ G    G   +A +  +E+ K  I+P+
Sbjct: 463 VDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFK--IEPE 520

Query: 513 H-VTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           + VT V + +  + +G   E  K  +RM  I
Sbjct: 521 NPVTYVTMANIYAAAGKWEEEGKMRKRMQEI 551


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/494 (34%), Positives = 277/494 (56%), Gaps = 41/494 (8%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+ N L++MY KFG +  A+ +FDKM +R+ VSW TMISAY++  L  +A +  V M  E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           GV  N+ T++++   C       G+  L                                
Sbjct: 61  GVRPNMFTYSSVLRAC------DGLFNL-------------------------------- 82

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +++H   ++        VR+ALI +YSR  +L +A  +F       ++ W+S+++G+   
Sbjct: 83  RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQN 142

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              +E+  LF+ M R+G      T+ S+L  C  +A L+ G++ H ++L+   +++ L+L
Sbjct: 143 SDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK---YDQDLIL 199

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N+L++MY + G + +A +VF  M  +D ++++++IAG    G  + ALKLFE M    I
Sbjct: 200 NNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGI 259

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           KP++VT+V VL ACSH+GLV EG   F  M  ++GI P  EH+ CM+DL GRAG L++A 
Sbjct: 260 KPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAV 319

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
           ++I +M   P +  W  LL AC++HRN  +   AA+++L   P+++G YVL++N+YA T 
Sbjct: 320 DLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQ 379

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W+ +A+VR  M + G++K PGC+W++       F++ D S+ Q +EI   L  L   + 
Sbjct: 380 RWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLM 439

Query: 690 DAGYVVKEEFCSEE 703
             GYV    F  ++
Sbjct: 440 GVGYVPDTNFVLQD 453



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 189/396 (47%), Gaps = 54/396 (13%)

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L+  L+  Y  F L ++A  + +    R  + W  +IS Y       +AL     M    
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVAR 229
           +R + FTY SVL+AC  + ++   R +H CI     +  +FV +AL+ +Y ++G+++ A 
Sbjct: 62  VRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENAL 118

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+FD+M+  D V W+++I+ +A      EA +LF  M+  G                   
Sbjct: 119 RVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAG------------------- 159

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                         Q+T L SV     L AC+ +  L+LG+++H   ++  Y +   + N
Sbjct: 160 -----------FLAQQTTLTSV-----LRACTGLALLELGRQVHVHVLK--YDQDLILNN 201

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           AL+ MY +C  L  A  +F    EK +I+W++M++G      ++E+  LF  M   G++P
Sbjct: 202 ALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKP 261

Query: 410 NYVTIASILPLCARVANLQHG-KEFHCYILRRAMF-----NEHLLLWNSLVEMYARSGKV 463
           NYVTI  +L  C+    ++ G   FH     + +F      EH   +  ++++  R+G++
Sbjct: 262 NYVTIVGVLFACSHAGLVEEGLYYFHSM---KELFGIDPGREH---YGCMIDLLGRAGRL 315

Query: 464 PEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVAL 498
            EA  + + M    D VT+ +L+    +     VA+
Sbjct: 316 SEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAI 351



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 105/196 (53%), Gaps = 1/196 (0%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           +QLH C I +GL+ +  +   L+  Y+ +    NA  + +       + W+ +I+ + ++
Sbjct: 83  RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQN 142

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN 213
               EAL ++K+M+         T  SVL+AC  +  ++ GR VH  +   ++  L ++N
Sbjct: 143 SDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHV-LKYDQDLILNN 201

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           AL+ MY K G ++ A  +F +M+E+D +SW+TMI+  A  G  KEA +LF  M+  G++ 
Sbjct: 202 ALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKP 261

Query: 274 NVITWNTIAGGCLRTG 289
           N +T   +   C   G
Sbjct: 262 NYVTIVGVLFACSHAG 277


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/528 (32%), Positives = 295/528 (55%), Gaps = 50/528 (9%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVH-------SCIDACHEWSLFVHNALVSMYGKFGQVD 226
           ++  Y + L+ C +  +   G+ +H        C+D      LF  N L++MY K   + 
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLD------LFAWNILLNMYVKSDFLC 90

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A +LFD+M ER+ +S+ T+I  YA    + EA +LFV +  E V  N  T+ ++     
Sbjct: 91  DASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASV----- 144

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                         L AC+ +  L LG +IH   ++        
Sbjct: 145 ------------------------------LQACATMEGLNLGNQIHCHVIKIGLHSDVF 174

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V NAL+ +Y++C  + ++  LF  +  ++ +TWN+++ G+  L   E++  LF  M    
Sbjct: 175 VSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYR 234

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           V+   VT +S L  CA +A L+ G + H   + +  F++ +++ N+L++MYA+ G + +A
Sbjct: 235 VQATEVTYSSALRACASLAALEPGLQIHSLTV-KTTFDKDIVVTNALIDMYAKCGSIKDA 293

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + VFDLM+++DEV++ ++I+GY + G GR AL++F++M + ++KPD +T V VLSAC+++
Sbjct: 294 RLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANA 353

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           GL+ +GQ  F  M   +GI P +EH+ CMV L GR G L+KA ++I ++P+ P+  +W  
Sbjct: 354 GLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRA 413

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           LLGAC IH +  +G  +A+++LE  P++   +VL++NMYA    WD +A VR  M+  GV
Sbjct: 414 LLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGV 473

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +K PG +W+++      F V DTS+ + + I  +L  L    K AGY+
Sbjct: 474 KKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYI 521



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 128/256 (50%), Gaps = 10/256 (3%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLD---SFAHIIFCCGKVKALAQGK 94
           I+ +  ++ +A      +A E F R+      H  VL    +FA ++  C  ++ L  G 
Sbjct: 105 ISFVTLIQGYAESVRFLEAIELFVRL------HREVLPNQFTFASVLQACATMEGLNLGN 158

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q+H   I +GL  +  +   L+  YA      N+  L   S  R  + WN +I  +V+ G
Sbjct: 159 QIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLG 218

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHN 213
              +AL ++  M   R++    TY S L+AC  +  ++ G  +HS  +    +  + V N
Sbjct: 219 DGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTN 278

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           AL+ MY K G +  AR +FD M ++D VSWN MIS Y+  GL +EA ++F +MQE  V+ 
Sbjct: 279 ALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKP 338

Query: 274 NVITWNTIAGGCLRTG 289
           + +T+  +   C   G
Sbjct: 339 DKLTFVGVLSACANAG 354



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 118/259 (45%), Gaps = 13/259 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +++  +  C  + AL  G Q+H+  +    +K+ V+   L+  YA      +A  + +  
Sbjct: 241 TYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLM 300

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           N +  + WN +IS Y   G   EAL ++ +MQ   ++ D  T+  VL AC     +D G+
Sbjct: 301 NKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQ 360

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
              + +   H  E  +  +  +V + G+ G +D A +L D++  +   + W  ++ A   
Sbjct: 361 AYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVI 420

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE---- 305
           +    L + + Q  +EM+ +    +V+  N  A    R  N   V + + R   ++    
Sbjct: 421 HNDIELGRISAQRVLEMEPQDKATHVLLSNMYATA-KRWDNVASVRKNMKRKGVKKEPGL 479

Query: 306 TYLDSVATV--IGLGACSH 322
           ++++S  TV    +G  SH
Sbjct: 480 SWIESQGTVHSFTVGDTSH 498



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 11/236 (4%)

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP---NYVTIASILPLCARVANLQHGKE 432
           ++  N+ L  ++    + +SA L +E F   V P   N    A+ L  C +      GK 
Sbjct: 1   MVCRNNFLIQFSRRGFSVQSAKLTQE-FVGHVSPSEFNSHAYANALQDCIQKDEPSRGKG 59

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HC IL+R    + L  WN L+ MY +S  + +A  +FD M  R+ +++ +LI GY    
Sbjct: 60  LHCEILKRGGCLD-LFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESV 118

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               A++LF  +++ ++ P+  T  +VL AC+    +  G +    +  I G+   +   
Sbjct: 119 RFLEAIELFVRLHR-EVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKI-GLHSDVFVS 176

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
             ++D+Y + G +  + E+  + P+      W T++     H   G GE A    L
Sbjct: 177 NALMDVYAKCGRMENSMELFAESPHR-NDVTWNTVIVG---HVQLGDGEKALRLFL 228


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 191/647 (29%), Positives = 330/647 (51%), Gaps = 45/647 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G+L  A+E +  ++      D    +F  I+        L  G+Q+H+  + +G E
Sbjct: 77  YVNSGSLGSAWELYKSMKSFGLMPDAY--TFGSILKGVACACRLDVGQQVHSLIVKMGYE 134

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           ++      L+  YA      +A  + +    R  + WN LI+ +V +G +  A  + + M
Sbjct: 135 EHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCM 194

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQV 225
           +   +R D+ T+  +L    E         +H   I    ++   V NA ++ Y + G +
Sbjct: 195 EEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSL 254

Query: 226 DVARRLFDKML-ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           + A R+FD  +  RD V+WN+M++A+ +    + AF+LF++MQ+ G E ++ T+ TI   
Sbjct: 255 EDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTI--- 311

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           + ACSH      GK +HG  ++    + 
Sbjct: 312 --------------------------------ISACSHKDN---GKSLHGLVIKRGLEQL 336

Query: 345 ENVRNALITMY--SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
             + NA+I MY  S    +  A  +F     K  ++WNS+L+G++    +E +  LF  M
Sbjct: 337 VPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHM 396

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             + V+ ++   +++L  C+ +A LQ G++ H   ++   F  +  + +SL+ MY++ G 
Sbjct: 397 RFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSG-FESNDFVASSLIFMYSKCGM 455

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           + +A+  F+  ++   +T+ S++  Y   G+G VAL LF +M   ++K DH+T VA L+A
Sbjct: 456 IEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTA 515

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSH GLV +G+   + M S YGI P++EH+AC VDL+GRAG L++AK +I  MP+ P + 
Sbjct: 516 CSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAM 575

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W TLLGAC+   +  +    A  LLE  PE    YV+++NMY     WD+ A +   MR
Sbjct: 576 VWKTLLGACRACGDIELAAQVASHLLELEPEEHCTYVILSNMYGHLKRWDEKACMARLMR 635

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
           +  V+K+PG +W++  N    F+ DD  +   +EIY +L  L E +K
Sbjct: 636 ERKVKKVPGWSWIEVKNEVHAFIADDRCHSHFEEIYQILEQLMEDIK 682



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 138/491 (28%), Positives = 224/491 (45%), Gaps = 50/491 (10%)

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
           AC L +  + R  + WN +IS YV  G    A  +YK M+S  +  D +T+ S+LK    
Sbjct: 55  ACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFGLMPDAYTFGSILKGVAC 114

Query: 188 MMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
              +D G+ VHS I    +E  ++  +AL+ MY K  +V  A  +F  +  R++VSWN +
Sbjct: 115 ACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNAL 174

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           I+ +  +G    AF L   M+EEGV              L  G F  +L LL   +    
Sbjct: 175 IAGFVLEGDHDTAFWLLRCMEEEGVR-------------LDDGTFSPLLTLLDEKKF--- 218

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                               KL  ++H   ++        V NA IT YS+C  L  A  
Sbjct: 219 -------------------YKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAER 259

Query: 367 LFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
           +F      + ++TWNSML+ +   D  E +  LF +M + G EP+  T  +I+  C+   
Sbjct: 260 VFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHKD 319

Query: 426 NLQHGKEFHCYILRRAMFNEHLL-LWNSLVEMY--ARSGKVPEAKSVFDLMSRRDEVTYT 482
           N   GK  H  +++R +  E L+ + N+++ MY  + S  + +A +VF  M  +D V++ 
Sbjct: 320 N---GKSLHGLVIKRGL--EQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWN 374

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           S++ G+   G    ALKLF  M    +  DH    AVL +CS    +  GQ Q   +T  
Sbjct: 375 SILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQ-QIHVLTVK 433

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602
            G        + ++ +Y + G++  A++   K     +S  W +++ A   H   G G+ 
Sbjct: 434 SGFESNDFVASSLIFMYSKCGMIEDARKSFEKTA-KDSSITWNSIMFAYAQH---GQGDV 489

Query: 603 AAEKLLETRPE 613
           A     + R +
Sbjct: 490 ALGLFFQMRDK 500



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 148/291 (50%), Gaps = 10/291 (3%)

Query: 239 DAVSWNTMISAYA--SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           D  + N ++S Y   S G    A  LF EM       + +TWNT+  G + +G+     E
Sbjct: 33  DIYATNNILSRYTRCSSGGLTFACNLFDEMSHR----DTVTWNTMISGYVNSGSLGSAWE 88

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
           L   M++     D+      L   +    L +G+++H   V+  Y E+    +AL+ MY+
Sbjct: 89  LYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYA 148

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFREMFRSGVEPNYVTIA 415
           +C+ +R A+++FK    ++ ++WN++++G+  L+   ++AF L R M   GV  +  T +
Sbjct: 149 KCERVRDAFMVFKCIPRRNSVSWNALIAGFV-LEGDHDTAFWLLRCMEEEGVRLDDGTFS 207

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD-LMS 474
            +L L       +   + HC I++  +  ++ +  N+ +  Y++ G + +A+ VFD  + 
Sbjct: 208 PLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVC-NATITSYSQCGSLEDAERVFDGAVG 266

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
            RD VT+ S++A +        A KLF +M +   +PD  T   ++SACSH
Sbjct: 267 SRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSH 317



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 126/272 (46%), Gaps = 10/272 (3%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R++    L  F+  G+   A + F  +R      D+   +F+ ++  C  +  L  G+Q+
Sbjct: 370 RVSWNSILTGFSQTGHSENALKLFVHMRFAVV--DIDHYAFSAVLRSCSDLATLQLGQQI 427

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H   +  G E N  +   L+  Y+   +  +A    E +     + WN ++  Y + G  
Sbjct: 428 HVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQG 487

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS--LFVHNA 214
             AL ++ QM+ ++++ D+ T+ + L AC  +  V+ GR +   + + +  S  +  +  
Sbjct: 488 DVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYAC 547

Query: 215 LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQL---FVEMQEEG 270
            V ++G+ G +D A+ L + M  + DA+ W T++ A  + G  + A Q+    +E++ E 
Sbjct: 548 AVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELEPEE 607

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
               VI  N    G L+  + K  +  L R R
Sbjct: 608 HCTYVILSNMY--GHLKRWDEKACMARLMRER 637



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 4/154 (2%)

Query: 451 NSLVEMYAR--SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           N+++  Y R  SG +  A ++FD MS RD VT+ ++I+GY   G    A +L++ M    
Sbjct: 38  NNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFG 97

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + PD  T  ++L   + +  +  GQ Q   +    G    +   + ++D+Y +   +  A
Sbjct: 98  LMPDAYTFGSILKGVACACRLDVGQ-QVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDA 156

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602
             +   +P    S  W  L+    +  +     W
Sbjct: 157 FMVFKCIP-RRNSVSWNALIAGFVLEGDHDTAFW 189


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 190/616 (30%), Positives = 323/616 (52%), Gaps = 41/616 (6%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           ++ ++ + ++  C K KAL  G  LHA  +  G + +  +   ++  YA       A  +
Sbjct: 1   MITETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQV 60

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +    +  + W+ +IS Y + G    A+ +Y QM    +  + + + SV+ AC  +  V
Sbjct: 61  FDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVISACASLSAV 117

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ +HS  +   +E   FV N+L+SMY K  Q   A  +F    E + VS+N +I+  
Sbjct: 118 TLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITG- 176

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                       FVE Q+                 L  G     LE    MR Q    D 
Sbjct: 177 ------------FVENQQ-----------------LERG-----LEFFKLMRQQGLIPDR 202

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
            A +  LG C+    LK G E+H   V+        + N +ITMYS    ++ A   F++
Sbjct: 203 FAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRL 262

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQH 429
             EK +I+WN++++  +H D   +   +F+ M   + V P+  T  S L  CA +A++ H
Sbjct: 263 IEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSH 322

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK+ H +++R  ++ + L + N+LV MYA+ G +  A  +F  M   + V++ ++IAG+G
Sbjct: 323 GKQIHAHLMRTRLYQD-LGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFG 381

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G  A++LFE+MN + I+PD VT + +L+AC+H+GLV +GQ  F  M   YGI P +
Sbjct: 382 NHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDI 441

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EHF+C++D+ GRAG LN+A+E + K P+     +  +LL A ++H +  IGE  A+ LL+
Sbjct: 442 EHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLK 501

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
            +P  +  YVL++N+YA+ G WD +A+ R  ++  G++K PG + ++       F + D 
Sbjct: 502 LQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVNGSVEKFTIGDF 561

Query: 670 SNVQAQEIYPLLGGLT 685
           ++++ +EI  +L  L+
Sbjct: 562 THLRIKEIKGILKTLS 577



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 14/250 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALG 104
           F     L +  E F  +R       ++ D FA   ++  C   + L +G +LH   + L 
Sbjct: 177 FVENQQLERGLEFFKLMR----QQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLN 232

Query: 105 LEKNPVLVPKLVTFYASFSLYNNA--CF-LVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
           L+  P +   ++T Y+  +L   A   F L+E  ++   + WN LI+       +A+ L 
Sbjct: 233 LDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDV---ISWNTLIAACSHCDDHAKGLR 289

Query: 162 VYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHNALVSMY 219
           V+K M +   +R D+FT+ S L AC  +  +  G+ +H+ +     +  L V NALV+MY
Sbjct: 290 VFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMY 349

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G +  A  +F KM+  + VSWNT+I+ + + GL + A +LF +M   G+  + +T+ 
Sbjct: 350 AKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFI 409

Query: 280 TIAGGCLRTG 289
            +   C   G
Sbjct: 410 GLLTACNHAG 419


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 196/650 (30%), Positives = 319/650 (49%), Gaps = 40/650 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVV-LDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           +A  G++ ++F  F+ +R     HD V   + + ++   G V     G+ +H   + +G 
Sbjct: 236 YAQNGHIEESFRIFSLMR---RFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 292

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +    +   L+  YA       A  + +    +  + WN L++ +V DG   +AL +   
Sbjct: 293 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCS 352

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE-WSLFVHNALVSMYGKFGQ 224
           M S     +  T+ S L AC      + GR++H  +      ++  + NALVSMYGK G+
Sbjct: 353 MISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGE 412

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  +RR+  +M  RD V+WN +I  YA      +A   F  M+ EGV  N IT  ++   
Sbjct: 413 MSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSA 472

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           CL  G+                                   L+ GK +H   V   +   
Sbjct: 473 CLLPGDL----------------------------------LERGKPLHAYIVSAGFESD 498

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           E+V+N+LITMY++C DL  +  LF     ++IITWN+ML+   H    EE   L  +M  
Sbjct: 499 EHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRS 558

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            GV  +  + +  L   A++A L+ G++ H   ++   F     ++N+  +MY++ G++ 
Sbjct: 559 FGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLG-FEHDSFIFNAAADMYSKCGEIG 617

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           E   +      R   ++  LI+  G  G        F EM +  IKP HVT V++L+ACS
Sbjct: 618 EVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 677

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV +G   ++ +   +G+ P +EH  C++DL GR+G L +A+  I+KMP  P   +W
Sbjct: 678 HGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVW 737

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
            +LL +C+IH N   G  AAE L +  PE+   YVL +NM+A TG W+ +  VR  M   
Sbjct: 738 RSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFK 797

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            ++K   C+WV   +  S F + D ++ Q  EIY  L  + +L+K++GYV
Sbjct: 798 NIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV 847



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/521 (25%), Positives = 227/521 (43%), Gaps = 41/521 (7%)

Query: 77  FAHIIFCCGKVKAL-AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
            A ++  CG+  ++  +G Q+H      GL  +  +   ++  Y  + L + +  + E  
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  L+  Y   G   E + +YK M+   +  +  +   V+ +CG + D   GR
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 196 -VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            ++   + +  E  L V N+L+SM G  G VD A  +FD+M ER                
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSER---------------- 224

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                              + I+WN+IA    + G+ +    + S MR     ++S    
Sbjct: 225 -------------------DTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVS 265

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L    HV   K G+ IHG  V+  +     V N L+ MY+       A ++FK    K
Sbjct: 266 TLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK 325

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +I+WNS+++ + +   + ++  L   M  SG   NYVT  S L  C      + G+  H
Sbjct: 326 DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILH 385

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             ++   +F    ++ N+LV MY + G++ E++ V   M RRD V + +LI GY    + 
Sbjct: 386 GLVVVSGLFYNQ-IIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDP 444

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA- 553
             AL  F+ M    +  +++T+V+VLSAC   G ++E  K         G F   EH   
Sbjct: 445 DKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAG-FESDEHVKN 503

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            ++ +Y + G L+ ++++   +        W  +L A   H
Sbjct: 504 SLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHH 543



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/530 (22%), Positives = 235/530 (44%), Gaps = 56/530 (10%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +S + +I  CG +K  + G+Q+    +  GLE    +   L++   S    + A ++ + 
Sbjct: 161 NSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQ 220

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
            + R  + WN + + Y ++G   E+  ++  M+      ++ T  ++L   G +    +G
Sbjct: 221 MSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWG 280

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H   +    +  + V N L+ MY   G+   A  +F +M  +D +SWN++++++ + 
Sbjct: 281 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVND 340

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G   +A  L   M   G  VN +T+ +    C     F+                     
Sbjct: 341 GRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEK-------------------- 380

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                          G+ +HG  V       + + NAL++MY +  ++  +  +      
Sbjct: 381 ---------------GRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR 425

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN-LQHGKE 432
           + ++ WN+++ GY   +  +++   F+ M   GV  NY+T+ S+L  C    + L+ GK 
Sbjct: 426 RDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKP 485

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H YI+  A F     + NSL+ MYA+ G +  ++ +F+ +  R+ +T+ +++A     G
Sbjct: 486 LHAYIV-SAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHG 544

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL--E 550
            G   LKL  +M    +  D  +    LSA +   ++ EGQ+       ++G+  +L  E
Sbjct: 545 HGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ-------LHGLAVKLGFE 597

Query: 551 H----FACMVDLYGRAGLLNKAKEIITKMPYTPTSAM--WATLLGACQIH 594
           H    F    D+Y + G +    E++  +P +   ++  W  L+ A   H
Sbjct: 598 HDSFIFNAAADMYSKCGEIG---EVVKMLPPSVNRSLPSWNILISALGRH 644



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 216/474 (45%), Gaps = 40/474 (8%)

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           Y  F     A  L +   +R  + WN ++S  VR G Y E +  +++M    I+  +F  
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 179 PSVLKACGEMMDV-DFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKML 236
            S++ ACG    +   G  VH  +      S ++V  A++ +YG +G V  +R++F++M 
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           +R                                   NV++W ++  G    G  + V++
Sbjct: 122 DR-----------------------------------NVVSWTSLMVGYSDKGEPEEVID 146

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
           +   MR +    +  +  + + +C  +    LG++I G  V+        V N+LI+M  
Sbjct: 147 IYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLG 206

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
              ++ +A  +F   +E+  I+WNS+ + Y      EES  +F  M R   E N  T+++
Sbjct: 207 SMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVST 266

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L +   V + + G+  H  +++   F+  + + N+L+ MYA +G+  EA  VF  M  +
Sbjct: 267 LLSVLGHVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK 325

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D +++ SL+A +   G    AL L   M  +    ++VT  + L+AC       +G +  
Sbjct: 326 DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-RIL 384

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             +  + G+F        +V +YG+ G +++++ ++ +MP     A W  L+G 
Sbjct: 385 HGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVA-WNALIGG 437



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 167/379 (44%), Gaps = 49/379 (12%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY KFG+V  AR LFD M  R+ VSWNTM+S     GL+ E  + F +M + G++ +   
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
             ++   C R+G+                                    + G ++HG   
Sbjct: 61  IASLVTACGRSGSM----------------------------------FREGVQVHGFVA 86

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           +        V  A++ +Y     +  +  +F+   ++++++W S++ GY+     EE   
Sbjct: 87  KSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVID 146

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           +++ M   GV  N  +++ ++  C  + +   G++    +++  +    L + NSL+ M 
Sbjct: 147 IYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGL-ESKLAVENSLISML 205

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
              G V  A  +FD MS RD +++ S+ A Y   G    + ++F  M +   + +  T+ 
Sbjct: 206 GSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVS 265

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQL--EHFAC----MVDLYGRAGLLNKAKEI 571
            +LS   H    V+ QK       I+G+  ++  +   C    ++ +Y  AG   +A  +
Sbjct: 266 TLLSVLGH----VDHQKWGR---GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLV 318

Query: 572 ITKMPYTPTSAMWATLLGA 590
             +MP T     W +L+ +
Sbjct: 319 FKQMP-TKDLISWNSLMAS 336



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 124/278 (44%), Gaps = 14/278 (5%)

Query: 30  INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           ++N +I+  N +  L   A  G+  +  +  +++R    S D    SF+  +    K+  
Sbjct: 525 LDNRNIITWNAM--LAANAHHGHGEEVLKLVSKMRSFGVSLDQF--SFSEGLSAAAKLAV 580

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L +G+QLH  A+ LG E +  +       Y+          ++  S  R    WN+LIS 
Sbjct: 581 LEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISA 640

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEW 207
             R G++ E    + +M    I+  + T+ S+L AC     VD G   +  I  D   E 
Sbjct: 641 LGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEP 700

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLF 263
           ++     ++ + G+ G++  A     KM ++ + + W +++++   + +    ++A +  
Sbjct: 701 AIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENL 760

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
            +++ E   V V++ N  A     TG ++ V  +  +M
Sbjct: 761 SKLEPEDDSVYVLSSNMFA----TTGRWEDVENVRKQM 794


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 209/656 (31%), Positives = 317/656 (48%), Gaps = 85/656 (12%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           +L Q K +HA  I  GL    + + KLV+          A  L +         +N LI 
Sbjct: 48  SLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIK 107

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-------CI 201
            Y       ++L +Y++M    I  + FT P VLKAC        G  VH+         
Sbjct: 108 GYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGS 167

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            AC      V NA++++Y   G +  ARR+FD + ER  VSWN+MI+ Y+  G  +EA  
Sbjct: 168 HAC------VQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVL 221

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           +F EMQE G+E +V T   +     + GNF                         LG   
Sbjct: 222 MFREMQEVGLEPDVFTLVGLLSVSTKHGNFD------------------------LGRFV 257

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
           H+  +  G EI              V NAL+ MY++C +L+ A  +F    +K +++W  
Sbjct: 258 HLHMVVTGIEIDSI-----------VTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTC 306

Query: 382 MLSGYTH---LDCA----------------------------EESAFLFREMFRSGVEPN 410
           M++ Y +   +DCA                             E+  LF  M  SGV  N
Sbjct: 307 MINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMAN 366

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             T+ +IL  C+ + +L  GK+ H YI    +      L N++++MYA+ G +  A  VF
Sbjct: 367 DTTLVAILSSCSHMGDLALGKQAHSYIFDNNI-TLSATLCNAIIDMYAKCGALQTAMDVF 425

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
             M  ++ V++  +I    + G G+ A+++FE+M  + + PD +T   +LSACSHSGLV 
Sbjct: 426 FGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVD 485

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            GQ  FE M   +GI P +EH+ACMVDL GR GLL +A  +I KMP  P   +W+ LLGA
Sbjct: 486 TGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGA 545

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           C+ + N  IG+   ++LLE    NSG YVL++NMY+ +  WD +  +   +   G++K  
Sbjct: 546 CRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCR 605

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV-----VKEEFCS 701
             ++++       F+VDD  +  +  IY +LG L + +K AGY      V+E +CS
Sbjct: 606 AISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQLMDHLKSAGYPCKHLDVEEIYCS 661



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 42/217 (19%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+  C  +  LA GKQ H+      +  +  L   ++  YA       A  +      + 
Sbjct: 373 ILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKN 432

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN++I      G+  EA+ ++++MQ+  +  D  T+  +L AC            HS
Sbjct: 433 AVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACS-----------HS 481

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-----LERDAVSWNTMISAYASKG 254
                                  G VD  +  F+ M     +  D   +  M+     +G
Sbjct: 482 -----------------------GLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRG 518

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           L  EA  L  +M    V+ +V+ W+ + G C   GN 
Sbjct: 519 LLGEAISLIKKMP---VKPDVVVWSALLGACRTYGNL 552


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 196/650 (30%), Positives = 319/650 (49%), Gaps = 40/650 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVV-LDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           +A  G++ ++F  F+ +R     HD V   + + ++   G V     G+ +H   + +G 
Sbjct: 219 YAQNGHIEESFRIFSLMR---RFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 275

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +    +   L+  YA       A  + +    +  + WN L++ +V DG   +AL +   
Sbjct: 276 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCS 335

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE-WSLFVHNALVSMYGKFGQ 224
           M S     +  T+ S L AC      + GR++H  +      ++  + NALVSMYGK G+
Sbjct: 336 MISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGE 395

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  +RR+  +M  RD V+WN +I  YA      +A   F  M+ EGV  N IT  ++   
Sbjct: 396 MSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSA 455

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           CL  G+                                   L+ GK +H   V   +   
Sbjct: 456 CLLPGDL----------------------------------LERGKPLHAYIVSAGFESD 481

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           E+V+N+LITMY++C DL  +  LF     ++IITWN+ML+   H    EE   L  +M  
Sbjct: 482 EHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRS 541

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            GV  +  + +  L   A++A L+ G++ H   ++   F     ++N+  +MY++ G++ 
Sbjct: 542 FGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLG-FEHDSFIFNAAADMYSKCGEIG 600

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           E   +      R   ++  LI+  G  G        F EM +  IKP HVT V++L+ACS
Sbjct: 601 EVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 660

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV +G   ++ +   +G+ P +EH  C++DL GR+G L +A+  I+KMP  P   +W
Sbjct: 661 HGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVW 720

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
            +LL +C+IH N   G  AAE L +  PE+   YVL +NM+A TG W+ +  VR  M   
Sbjct: 721 RSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFK 780

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            ++K   C+WV   +  S F + D ++ Q  EIY  L  + +L+K++GYV
Sbjct: 781 NIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV 830



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 227/520 (43%), Gaps = 41/520 (7%)

Query: 78  AHIIFCCGKVKAL-AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           A ++  CG+  ++  +G Q+H      GL  +  +   ++  Y  + L + +  + E   
Sbjct: 45  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 104

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR- 195
            R  + W  L+  Y   G   E + +YK M+   +  +  +   V+ +CG + D   GR 
Sbjct: 105 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQ 164

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           ++   + +  E  L V N+L+SM G  G VD A  +FD+M ER                 
Sbjct: 165 IIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSER----------------- 207

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                             + I+WN+IA    + G+ +    + S MR     ++S     
Sbjct: 208 ------------------DTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVST 249

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L    HV   K G+ IHG  V+  +     V N L+ MY+       A ++FK    K 
Sbjct: 250 LLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKD 309

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +I+WNS+++ + +   + ++  L   M  SG   NYVT  S L  C      + G+  H 
Sbjct: 310 LISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHG 369

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            ++   +F    ++ N+LV MY + G++ E++ V   M RRD V + +LI GY    +  
Sbjct: 370 LVVVSGLFYNQ-IIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 428

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-C 554
            AL  F+ M    +  +++T+V+VLSAC   G ++E  K         G F   EH    
Sbjct: 429 KALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAG-FESDEHVKNS 487

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           ++ +Y + G L+ ++++   +        W  +L A   H
Sbjct: 488 LITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHH 526



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/530 (22%), Positives = 235/530 (44%), Gaps = 56/530 (10%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +S + +I  CG +K  + G+Q+    +  GLE    +   L++   S    + A ++ + 
Sbjct: 144 NSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQ 203

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
            + R  + WN + + Y ++G   E+  ++  M+      ++ T  ++L   G +    +G
Sbjct: 204 MSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWG 263

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H   +    +  + V N L+ MY   G+   A  +F +M  +D +SWN++++++ + 
Sbjct: 264 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVND 323

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G   +A  L   M   G  VN +T+ +    C     F+                     
Sbjct: 324 GRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEK-------------------- 363

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                          G+ +HG  V       + + NAL++MY +  ++  +  +      
Sbjct: 364 ---------------GRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR 408

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN-LQHGKE 432
           + ++ WN+++ GY   +  +++   F+ M   GV  NY+T+ S+L  C    + L+ GK 
Sbjct: 409 RDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKP 468

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H YI+  A F     + NSL+ MYA+ G +  ++ +F+ +  R+ +T+ +++A     G
Sbjct: 469 LHAYIV-SAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHG 527

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL--E 550
            G   LKL  +M    +  D  +    LSA +   ++ EGQ+       ++G+  +L  E
Sbjct: 528 HGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ-------LHGLAVKLGFE 580

Query: 551 H----FACMVDLYGRAGLLNKAKEIITKMPYTPTSAM--WATLLGACQIH 594
           H    F    D+Y + G +    E++  +P +   ++  W  L+ A   H
Sbjct: 581 HDSFIFNAAADMYSKCGEIG---EVVKMLPPSVNRSLPSWNILISALGRH 627



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 211/456 (46%), Gaps = 40/456 (8%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV-DFGR 195
           +R  + WN ++S  VR G Y E +  +++M    I+  +F   S++ ACG    +   G 
Sbjct: 3   VRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGV 62

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH  +      S ++V  A++ +YG +G V  +R++F++M +R                
Sbjct: 63  QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDR---------------- 106

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                              NV++W ++  G    G  + V+++   MR +    +  +  
Sbjct: 107 -------------------NVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMS 147

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
           + + +C  +    LG++I G  V+        V N+LI+M     ++ +A  +F   +E+
Sbjct: 148 LVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSER 207

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             I+WNS+ + Y      EES  +F  M R   E N  T++++L +   V + + G+  H
Sbjct: 208 DTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIH 267

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             +++   F+  + + N+L+ MYA +G+  EA  VF  M  +D +++ SL+A +   G  
Sbjct: 268 GLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRS 326

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL L   M  +    ++VT  + L+AC       +G +    +  + G+F        
Sbjct: 327 LDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNA 385

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +V +YG+ G +++++ ++ +MP     A W  L+G 
Sbjct: 386 LVSMYGKIGEMSESRRVLLQMPRRDVVA-WNALIGG 420



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 116/259 (44%), Gaps = 10/259 (3%)

Query: 30  INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           ++N +I+  N +  L   A  G+  +  +  +++R    S D    SF+  +    K+  
Sbjct: 508 LDNRNIITWNAM--LAANAHHGHGEEVLKLVSKMRSFGVSLDQF--SFSEGLSAAAKLAV 563

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L +G+QLH  A+ LG E +  +       Y+          ++  S  R    WN+LIS 
Sbjct: 564 LEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISA 623

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEW 207
             R G++ E    + +M    I+  + T+ S+L AC     VD G   +  I  D   E 
Sbjct: 624 LGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEP 683

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLF 263
           ++     ++ + G+ G++  A     KM ++ + + W +++++   + +    ++A +  
Sbjct: 684 AIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENL 743

Query: 264 VEMQEEGVEVNVITWNTIA 282
            +++ E   V V++ N  A
Sbjct: 744 SKLEPEDDSVYVLSSNMFA 762



 Score = 43.1 bits (100), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  R+EV++ ++++G    G     ++ F +M    IKP    + ++++AC  SG +   
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
             Q     +  G+   +     ++ LYG  GL++ ++++  +MP     + W +L+
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVS-WTSLM 115


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/482 (35%), Positives = 275/482 (57%), Gaps = 5/482 (1%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY K G    A ++FD M  RD VSWNTM+S +   G      Q+F EM    +E NVIT
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEM----LERNVIT 56

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           W  I  G  +   ++  L L  +MR      + +  +  L ACS + AL+ G++IHG   
Sbjct: 57  WTAIISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVW 116

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
           +        + +AL+ +YS+C  L  A  +F+   E   ++   +L G+T     EE+  
Sbjct: 117 KLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIE 176

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
            F +M   G E +   ++++L  C    +L  GK+ H  +++R++   +  + N L+ MY
Sbjct: 177 FFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSL-GSNPFVGNGLINMY 235

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           ++ G++ E+  VF+ ++ R+ V++ S+IA +   G+G  AL+L+EEM +    P  +T +
Sbjct: 236 SKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFL 295

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
           ++L ACSH GLV +G K  + MT +YGI P+ EH+AC+VD+ GRAGLLN+AK +I ++  
Sbjct: 296 SLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSI 355

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637
            P   +W  LLGAC I  +T IG++AAE+LL   P+    YVL+AN+Y++ G WD+ A+ 
Sbjct: 356 KPDVLIWQALLGACSIRGDTEIGKYAAEQLLLLEPKKPAPYVLLANIYSSKGRWDERART 415

Query: 638 RTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKE 697
              M+++GV K  G +W++       F+V+D  + QA+ IY +L  L  LM D GYV  +
Sbjct: 416 IKRMKEMGVAKETGISWIEIEKKVHSFVVEDKKHPQAEIIYGVLAELFRLMIDEGYVPDK 475

Query: 698 EF 699
            F
Sbjct: 476 RF 477



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 174/369 (47%), Gaps = 37/369 (10%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W  +IS   ++  Y ++L ++ QM+   I  +  TY S L AC  +  ++ GR +
Sbjct: 52  RNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQI 111

Query: 198 HSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H  +     + +L + +AL+ +Y K G ++ ARR+F+  +E D VS   ++  +   G  
Sbjct: 112 HGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFE 171

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           +EA + FV+M   G EV+                                  + V+ V  
Sbjct: 172 EEAIEFFVKMVNIGTEVDP---------------------------------NMVSAV-- 196

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           LGAC    +L LGK+IH   ++   G    V N LI MYS+C +L+ +  +F     ++ 
Sbjct: 197 LGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNS 256

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           ++WNSM++ +        +  L+ EM + G  P  +T  S+L  C+ V  +  G +F   
Sbjct: 257 VSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKS 316

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGR 495
           + +    +     +  +V+M  R+G + EAKS+ + +S + D + + +L+    I+G+  
Sbjct: 317 MTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTE 376

Query: 496 VALKLFEEM 504
           +     E++
Sbjct: 377 IGKYAAEQL 385



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 111/219 (50%), Gaps = 1/219 (0%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  ++AL +G+Q+H     LG++ N  +   L+  Y+      +A  + E++     +  
Sbjct: 99  CSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSM 158

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
            +++  + ++GF  EA+  + +M +     D     +VL ACG    +  G+ +HS  I 
Sbjct: 159 TVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIK 218

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                + FV N L++MY K G++  + ++F+ +  R++VSWN+MI+A+A  G    A +L
Sbjct: 219 RSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRL 278

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           + EM +EG     +T+ ++   C   G     ++ L  M
Sbjct: 279 YEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSM 317



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 112/282 (39%), Gaps = 40/282 (14%)

Query: 38  INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLH 97
           +++   L  F   G   +A E F  +++     +V  +  + ++  CG   +L  GKQ+H
Sbjct: 156 VSMTVILVGFTQNGFEEEAIEFF--VKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIH 213

Query: 98  ACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
           +  I   L  NP +   L+  Y+       +  +      R  + WN +I+ + R G   
Sbjct: 214 SLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGF 273

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN--AL 215
            AL +Y++M        + T+ S+L AC  +  VD G      +   +  S    +   +
Sbjct: 274 RALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACV 333

Query: 216 VSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA------------------------- 249
           V M G+ G ++ A+ L +++ ++ D + W  ++ A                         
Sbjct: 334 VDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLLLLEPKKP 393

Query: 250 ---------YASKGLWKEAFQLFVEMQEEGVEVNV-ITWNTI 281
                    Y+SKG W E  +    M+E GV     I+W  I
Sbjct: 394 APYVLLANIYSSKGRWDERARTIKRMKEMGVAKETGISWIEI 435


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 187/605 (30%), Positives = 317/605 (52%), Gaps = 46/605 (7%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q+H   I LG E N ++   LV  Y        A  L ++   +  + +N L++ Y  +G
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHN 213
              EA+ ++ ++ +  I+  +FT+ ++L A   + D  FG+ VH   +     W++FV N
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGN 280

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           AL+  Y K  QVD   +LF +M E D +S+N +I++YA                      
Sbjct: 281 ALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYA---------------------- 318

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD----SVATVIGLGACSHVGALKLG 329
               WN         G FK   +L  ++  Q T  D      AT++ +   S    L++G
Sbjct: 319 ----WN---------GQFKESFDLFRKL--QFTRFDRRQFPFATLLSIATSSL--NLRMG 361

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           ++IH  A+         V NAL+ MY++C   + A  +F   A KS + W +M+S Y   
Sbjct: 362 RQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQK 421

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              EE   +F +M R+GV  +  T ASIL  CA +A++  G++ H  ++R   F  ++  
Sbjct: 422 GKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSG-FMSNVYS 480

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            ++L++ YA+ G + +A   F  M  R+ V++ +LI+ Y   G     L  F++M ++  
Sbjct: 481 GSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGY 540

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           KPD V+ ++VLSACSH G V E    F  MT IY + P+ EH+  MVD+  R G  ++A+
Sbjct: 541 KPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAE 600

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP-ENSGYYVLIANMYAAT 628
           +++T+MP+ P+  MW+++L +C+IH+N  + + AA++L       ++  Y+ ++N+YA  
Sbjct: 601 KLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVA 660

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           G WD +AKV+  MRD GVRK+P  +WV+  +    F  +D S+ + ++I   +  L++ M
Sbjct: 661 GQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEM 720

Query: 689 KDAGY 693
           +  GY
Sbjct: 721 EKKGY 725



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/503 (23%), Positives = 233/503 (46%), Gaps = 40/503 (7%)

Query: 90  LAQGKQLHACAIALGLE-KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           L +G  +HA  +   +  KN + +  +++ +  F   + A  L +    R  + W +LI 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
            Y++     EA  +Y  M+   I  D  T  ++L   GE+   +    +H+  I   +E+
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           +L V N+LV  Y K   + +A +LF  ML +D V++N++++ Y+++GL +EA +LF+E+ 
Sbjct: 174 NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH 233

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
             G++ +  T+  +                             ++  +GL         K
Sbjct: 234 NSGIKPSDFTFAAL-----------------------------LSAAVGLDDT------K 258

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            G+++HG  ++  +     V NAL+  YS+   +     LF    E   I++N +++ Y 
Sbjct: 259 FGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYA 318

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                +ES  LFR++  +  +      A++L +     NL+ G++ HC  +     N   
Sbjct: 319 WNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGA-NFES 377

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N+LV+MYA+     EA+ +FD ++ +  V +T++I+ Y  +G+    + +F +M + 
Sbjct: 378 RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRT 437

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            +  D  T  ++L AC++   +  G +Q   +    G    +   + ++D Y + G +  
Sbjct: 438 GVPADQATFASILRACANLASISLG-RQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTD 496

Query: 568 AKEIITKMPYTPTSAMWATLLGA 590
           A +   +MP    S  W  L+ A
Sbjct: 497 AIKSFGEMP-ERNSVSWNALISA 518



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 179/379 (47%), Gaps = 9/379 (2%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N  V+ + + G +  A ++FD+M  ++ +S N MIS +   G   +A +LF  M    VE
Sbjct: 47  NFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGM----VE 102

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
              ++W  + GG L++   K    L + MR      D V  V  L     +    +  +I
Sbjct: 103 RTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQI 162

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           H   ++  Y     V N+L+  Y +   L  A  LFK    K  +T+NS+++GY++    
Sbjct: 163 HTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLN 222

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           EE+  LF E+  SG++P+  T A++L     + + + G++ H ++L +  F  ++ + N+
Sbjct: 223 EEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL-KTNFVWNVFVGNA 281

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L++ Y++  +V E   +F  M   D ++Y  +I  Y   G+ + +  LF ++   +    
Sbjct: 282 LLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 513 HVTMVAVLS-ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
                 +LS A S   L +  Q   + +T       ++E+   +VD+Y +     +A++I
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMYAKCNGDKEAQKI 399

Query: 572 ITKMPYTPTSAMWATLLGA 590
              +    ++  W  ++ A
Sbjct: 400 FDNIA-CKSTVPWTAMISA 417



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 21/215 (9%)

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L+ G   H + +   M  ++ +  N ++  + + GK+ +A+ +FD M  R  V++T LI 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH---SGLVVEGQKQFERMTSIY 543
           GY    + + A +L+ +M +  I+PD+VT+V +LS         ++V+      ++   Y
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 544 GIFPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGE 601
            +        C  +VD Y +   L  A ++   M    T    + + G    + N G+ E
Sbjct: 174 NL------MVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTG----YSNEGLNE 223

Query: 602 WAAEKLLETRPENSGY----YVLIANMYAATGCWD 632
            A E  LE    NSG     +   A + AA G  D
Sbjct: 224 EAIELFLEL--HNSGIKPSDFTFAALLSAAVGLDD 256


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 196/650 (30%), Positives = 319/650 (49%), Gaps = 40/650 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVV-LDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           +A  G++ ++F  F+ +R     HD V   + + ++   G V     G+ +H   + +G 
Sbjct: 326 YAQNGHIEESFRIFSLMR---RFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 382

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +    +   L+  YA       A  + +    +  + WN L++ +V DG   +AL +   
Sbjct: 383 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCS 442

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE-WSLFVHNALVSMYGKFGQ 224
           M S     +  T+ S L AC      + GR++H  +      ++  + NALVSMYGK G+
Sbjct: 443 MISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGE 502

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  +RR+  +M  RD V+WN +I  YA      +A   F  M+ EGV  N IT  ++   
Sbjct: 503 MSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSA 562

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           CL  G+                                   L+ GK +H   V   +   
Sbjct: 563 CLLPGDL----------------------------------LERGKPLHAYIVSAGFESD 588

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           E+V+N+LITMY++C DL  +  LF     ++IITWN+ML+   H    EE   L  +M  
Sbjct: 589 EHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRS 648

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            GV  +  + +  L   A++A L+ G++ H   ++   F     ++N+  +MY++ G++ 
Sbjct: 649 FGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLG-FEHDSFIFNAAADMYSKCGEIG 707

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           E   +      R   ++  LI+  G  G        F EM +  IKP HVT V++L+ACS
Sbjct: 708 EVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 767

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV +G   ++ +   +G+ P +EH  C++DL GR+G L +A+  I+KMP  P   +W
Sbjct: 768 HGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVW 827

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
            +LL +C+IH N   G  AAE L +  PE+   YVL +NM+A TG W+ +  VR  M   
Sbjct: 828 RSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFK 887

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            ++K   C+WV   +  S F + D ++ Q  EIY  L  + +L+K++GYV
Sbjct: 888 NIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV 937



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/547 (25%), Positives = 245/547 (44%), Gaps = 49/547 (8%)

Query: 93  GKQLHACAIALGLEKNPVL-VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           G+ +HA  +  GL +  VL    L+  Y  F     A  L +   +R  + WN ++S  V
Sbjct: 91  GRAVHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIV 149

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV-DFGRVVHSCIDACHEWS-L 209
           R G Y E +  +++M    I+  +F   S++ ACG    +   G  VH  +      S +
Sbjct: 150 RVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 209

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF--------- 260
           +V  A++ +YG +G V  +R++F++M +R+ VSW +++  Y+ KG  +E           
Sbjct: 210 YVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLG 269

Query: 261 -QLFVEMQEEGVEV-------------------------------NVITWNTIAGGCLRT 288
            Q+  ++ + G+E                                + I+WN+IA    + 
Sbjct: 270 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 329

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
           G+ +    + S MR     ++S      L    HV   K G+ IHG  V+  +     V 
Sbjct: 330 GHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 389

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N L+ MY+       A ++FK    K +I+WNS+++ + +   + ++  L   M  SG  
Sbjct: 390 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 449

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            NYVT  S L  C      + G+  H  ++   +F    ++ N+LV MY + G++ E++ 
Sbjct: 450 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQ-IIGNALVSMYGKIGEMSESRR 508

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           V   M RRD V + +LI GY    +   AL  F+ M    +  +++T+V+VLSAC   G 
Sbjct: 509 VLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGD 568

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           ++E  K         G F   EH    ++ +Y + G L+ ++++   +        W  +
Sbjct: 569 LLERGKPLHAYIVSAG-FESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAM 626

Query: 588 LGACQIH 594
           L A   H
Sbjct: 627 LAANAHH 633



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/512 (22%), Positives = 225/512 (43%), Gaps = 56/512 (10%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+Q+    +  GLE    +   L++   S    + A ++ +  + R  + WN + + Y +
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 328

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFV 211
           +G   E+  ++  M+      ++ T  ++L   G +    +GR +H   +    +  + V
Sbjct: 329 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV 388

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N L+ MY   G+   A  +F +M  +D +SWN++++++ + G   +A  L   M   G 
Sbjct: 389 CNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 448

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
            VN +T+ +    C     F+                                    G+ 
Sbjct: 449 SVNYVTFTSALAACFTPDFFEK-----------------------------------GRI 473

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +HG  V       + + NAL++MY +  ++  +  +      + ++ WN+++ GY   + 
Sbjct: 474 LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDED 533

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVAN-LQHGKEFHCYILRRAMFNEHLLLW 450
            +++   F+ M   GV  NY+T+ S+L  C    + L+ GK  H YI+  A F     + 
Sbjct: 534 PDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIV-SAGFESDEHVK 592

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           NSL+ MYA+ G +  ++ +F+ +  R+ +T+ +++A     G G   LKL  +M    + 
Sbjct: 593 NSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVS 652

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL--EH----FACMVDLYGRAGL 564
            D  +    LSA +   ++ EGQ+       ++G+  +L  EH    F    D+Y + G 
Sbjct: 653 LDQFSFSEGLSAAAKLAVLEEGQQ-------LHGLAVKLGFEHDSFIFNAAADMYSKCGE 705

Query: 565 LNKAKEIITKMPYTPTSAM--WATLLGACQIH 594
           +    E++  +P +   ++  W  L+ A   H
Sbjct: 706 IG---EVVKMLPPSVNRSLPSWNILISALGRH 734


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 190/616 (30%), Positives = 323/616 (52%), Gaps = 41/616 (6%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           ++ ++ + ++  C K KAL  G  LHA  +  G + +  +   ++  YA       A  +
Sbjct: 1   MITETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQV 60

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +    +  + W+ +IS Y + G    A+ +Y QM    +  + + + SV+ AC  +  V
Sbjct: 61  FDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVISACASLSAV 117

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ +HS  +   +E   FV N+L+SMY K  Q   A  +F    E + VS+N +I+  
Sbjct: 118 TLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITG- 176

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                       FVE Q+                 L  G     LE    MR Q    D 
Sbjct: 177 ------------FVENQQ-----------------LERG-----LEFFKLMRQQGLIPDR 202

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
            A +  LG C+    LK G E+H   V+        + N +ITMYS    ++ A   F++
Sbjct: 203 FAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRL 262

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQH 429
             EK +I+WN++++  +H D   +   +F+ M   + V P+  T  S L  CA +A++ H
Sbjct: 263 IEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSH 322

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK+ H +++R  ++ + L + N+LV MYA+ G +  A  +F  M   + V++ ++IAG+G
Sbjct: 323 GKQIHAHLMRTRLYQD-LGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFG 381

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G  A++LFE+MN + I+PD VT + +L+AC+H+GLV +GQ  F  M   YGI P +
Sbjct: 382 NHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDI 441

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EHF+C++D+ GRAG LN+A+E + K P+     +  +LL A ++H +  IGE  A+ LL+
Sbjct: 442 EHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLK 501

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
            +P  +  YVL++N+YA+ G WD +A+ R  ++  G++K PG + ++       F + D 
Sbjct: 502 LQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVNGSVEKFTIGDF 561

Query: 670 SNVQAQEIYPLLGGLT 685
           ++++ +EI  +L  L+
Sbjct: 562 THLRIKEIKGILKTLS 577



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 14/250 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALG 104
           F     L +  E F  +R       ++ D FA   ++  C   + L +G +LH   + L 
Sbjct: 177 FVENQQLERGLEFFKLMR----QQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLN 232

Query: 105 LEKNPVLVPKLVTFYASFSLYNNA--CF-LVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
           L+  P +   ++T Y+  +L   A   F L+E  ++   + WN LI+       +A+ L 
Sbjct: 233 LDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDV---ISWNTLIAACSHCDDHAKGLR 289

Query: 162 VYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHNALVSMY 219
           V+K M +   +R D+FT+ S L AC  +  +  G+ +H+ +     +  L V NALV+MY
Sbjct: 290 VFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMY 349

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G +  A  +F KM+  + VSWNT+I+ + + GL + A +LF +M   G+  + +T+ 
Sbjct: 350 AKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFI 409

Query: 280 TIAGGCLRTG 289
            +   C   G
Sbjct: 410 GLLTACNHAG 419


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 188/627 (29%), Positives = 315/627 (50%), Gaps = 43/627 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++       AL  G+++HA ++  G   +  +   L+  YA   L  +A  +    
Sbjct: 203 TFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM 262

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN L++    +    EAL ++ + ++   +    TY +V+K C  +  +   R
Sbjct: 263 ETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALAR 322

Query: 196 VVHSCIDACHEWSLF--VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            +HSC+   H + L   V  AL   Y K G++  A  +F            +M +     
Sbjct: 323 QLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIF------------SMTTG---- 365

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                               NV++W  I  GC++ G+    + L SRMR      +    
Sbjct: 366 ------------------SRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTY 407

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L A   +    L  +IH   ++  Y    +V  AL+  YS+      A  +FKM  +
Sbjct: 408 SAMLKASLSI----LPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQ 463

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA-RVANLQHGKE 432
           K ++ W++MLS +      E + +LF +M   G++PN  TI+S++  CA   A +  G++
Sbjct: 464 KDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ 523

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
           FH  I  +  +++ + + ++LV MY+R G +  A+ VF+  + RD V++ S+I+GY   G
Sbjct: 524 FHA-ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHG 582

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               A++ F +M  + I+ D VT +AV+  C+H+GLVVEGQ+ F+ M   + I P +EH+
Sbjct: 583 YSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHY 642

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           ACMVDLY RAG L++   +I  MP+   + +W TLLGAC++H+N  +G+++A+KLL   P
Sbjct: 643 ACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEP 702

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            +S  YVL++N+YAA G W +  +VR  M    V+K  GC+W+   N    F+  D S+ 
Sbjct: 703 HDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHP 762

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEF 699
            + +IY  L  +   +K  GY     F
Sbjct: 763 MSDQIYKKLKVIITRLKQDGYSPNTSF 789



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 133/537 (24%), Positives = 245/537 (45%), Gaps = 51/537 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAI 101
           L D+A RG + +  + F+     A    V++DS   + ++  C  V     G+QLH   +
Sbjct: 71  LFDYARRGMVPEVLDQFS----VARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCV 126

Query: 102 ALGLEKNPVLV-PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
             G ++  V     LV  Y           + E    +  + W  L++       ++E +
Sbjct: 127 KCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVM 186

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVHNALVSM 218
            ++ +M++  I  + FT+ SVL A      +D G+ VH  S    C   S+FV N+L++M
Sbjct: 187 ALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRS-SVFVCNSLMNM 245

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G V+ A+ +F+ M  RD VSWNT+++         EA QLF E +           
Sbjct: 246 YAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRAT--------- 296

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                              + +M TQ TY    ATVI L  C+++  L L +++H   ++
Sbjct: 297 -------------------MGKM-TQSTY----ATVIKL--CANLKQLALARQLHSCVLK 330

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKM-TAEKSIITWNSMLSGYTHLDCAEESAF 397
             +    NV  AL   YS+C +L  A  +F M T  +++++W +++SG         +  
Sbjct: 331 HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           LF  M    V PN  T +++L     +   Q     H  ++ +  +     +  +L+  Y
Sbjct: 391 LFSRMREDRVMPNEFTYSAMLKASLSILPPQ----IHAQVI-KTNYQHIPSVGTALLASY 445

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           ++ G   +A S+F ++ ++D V ++++++ +   G+   A  LF +M    IKP+  T+ 
Sbjct: 446 SKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTIS 505

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           +V+ AC+     V+  +QF  ++  Y     +   + +V +Y R G ++ A+ +  +
Sbjct: 506 SVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER 562



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 197/430 (45%), Gaps = 55/430 (12%)

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP----------WNLLISLYVRDGFYAE 158
           P  VPKL+   AS +   +   L +    RYPL            N ++  Y R G   E
Sbjct: 23  PEQVPKLLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPE 82

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHE-WSLFVHNALV 216
            L  +   +   +  D+ T   VLKAC  + D   G  +H  C+   H+   +    +LV
Sbjct: 83  VLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLV 142

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K G V     +F+ M +++ V+W ++++  A   +  E   LF  M+ EG+  N  
Sbjct: 143 DMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPF 202

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           T+ ++                                   L A +  GAL LG+ +H  +
Sbjct: 203 TFASV-----------------------------------LSAVASQGALDLGQRVHAQS 227

Query: 337 VR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           V+ GC      V N+L+ MY++C  +  A  +F     + +++WN++++G    +C  E+
Sbjct: 228 VKFGCRSSV-FVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEA 286

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL--LWNSL 453
             LF E   +  +    T A+++ LCA +  L   ++ H  +L+      HL   +  +L
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF---HLTGNVMTAL 343

Query: 454 VEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
            + Y++ G++ +A ++F + +  R+ V++T++I+G    G+  +A+ LF  M ++++ P+
Sbjct: 344 ADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPN 403

Query: 513 HVTMVAVLSA 522
             T  A+L A
Sbjct: 404 EFTYSAMLKA 413



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 132/306 (43%), Gaps = 3/306 (0%)

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE- 345
           R G    VL+  S  R     +DS      L AC  V    LG+++H   V+  +   E 
Sbjct: 76  RRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEV 135

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           +   +L+ MY +C  +     +F+   +K+++TW S+L+G  H     E   LF  M   
Sbjct: 136 SAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAE 195

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G+ PN  T AS+L   A    L  G+  H   ++       + + NSL+ MYA+ G V +
Sbjct: 196 GIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGC-RSSVFVCNSLMNMYAKCGLVED 254

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           AKSVF+ M  RD V++ +L+AG  +      AL+LF E      K    T   V+  C++
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
              +    +Q       +G          + D Y + G L  A  I +    +     W 
Sbjct: 315 LKQLALA-RQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 586 TLLGAC 591
            ++  C
Sbjct: 374 AIISGC 379



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 6/232 (2%)

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
           Y L ++    + +  N +L  Y       E    F    R GV  +  T++ +L  C  V
Sbjct: 53  YPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSV 112

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
            +   G++ HC  ++       +    SLV+MY + G V E   VF+ M +++ VT+TSL
Sbjct: 113 PDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSL 172

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           + G          + LF  M    I P+  T  +VLSA +  G +  GQ+   +    +G
Sbjct: 173 LTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK-FG 231

Query: 545 IFPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
               +  F C  ++++Y + GL+  AK +   M  T     W TL+   Q++
Sbjct: 232 CRSSV--FVCNSLMNMYAKCGLVEDAKSVFNWME-TRDMVSWNTLMAGLQLN 280


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 189/601 (31%), Positives = 306/601 (50%), Gaps = 43/601 (7%)

Query: 63  IRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA 120
           IR+ +     V D + +  +    G++K+++ G  +H   +      +  +   L+  Y 
Sbjct: 104 IRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYM 163

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
           +F     A  + +    R  + WN +IS Y R+G+  +AL ++  M +  +  D+ T  S
Sbjct: 164 NFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVS 223

Query: 181 VLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERD 239
           +L  CG +  ++ GR VH  ++       + V NALV+MY K G++D AR +F +M  RD
Sbjct: 224 MLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRD 283

Query: 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
                                              VITW  +  G +  G+ +  LEL  
Sbjct: 284 -----------------------------------VITWTCMINGYIEDGDVENALELCR 308

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
            M+ +    ++V     + AC     L  GK +HG A+R        +  +LI+MY++CK
Sbjct: 309 LMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCK 368

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
            +   + +F   +      W+++++G    +   ++  LF+ M R  VEPN  T+ S+LP
Sbjct: 369 HIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLP 428

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR--- 476
             A +A+L+     HCY L +  F   L     LV +Y++ G +  A  +F+ +  +   
Sbjct: 429 AYATLADLRQTMNIHCY-LTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKS 487

Query: 477 -DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            D V + +LI+GYG+ G+G  AL++F EM ++ + P+ +T  + L+ACSHSGLV EG   
Sbjct: 488 KDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTL 547

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  M   Y    +  H+ C+VDL GRAG L++A  +IT +P+ PTS +W  LL AC  H 
Sbjct: 548 FSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGALLAACVTHE 607

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  +GE AA KL E  PEN+G YVL+AN+YAA G W  + KVR  M ++G+RK PG + +
Sbjct: 608 NVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRNMMENVGLRKKPGHSTI 667

Query: 656 D 656
           +
Sbjct: 668 E 668



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 153/531 (28%), Positives = 246/531 (46%), Gaps = 53/531 (9%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           +++++ K LH C +  G   +  ++  L   YA       A  L +       L +N++I
Sbjct: 29  QSISKTKALH-CHVITGGRVSGHILSTLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVI 87

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIR--GDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
            +YVRDG Y +A+ V+ +M S  I+   D +TYP V KA GE+  +  G V+H  I    
Sbjct: 88  RMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRI--LR 145

Query: 206 EW---SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
            W     +V NAL++MY  FG+V++AR +FD M  RD +SWNTMIS Y   G   +A  +
Sbjct: 146 SWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMM 205

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M  EGV+                                    D    V  L  C H
Sbjct: 206 FDWMVNEGVDP-----------------------------------DHATIVSMLPVCGH 230

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +  L++G+ +H        G+   V+NAL+ MY +C  +  A  +F     + +ITW  M
Sbjct: 231 LKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCM 290

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++GY      E +  L R M   GV PN VTIAS++  C     L  GK  H + +R+ +
Sbjct: 291 INGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKV 350

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE-GRVALKLF 501
            ++ +++  SL+ MYA+   +     VF   SR     ++++IAG  +Q E  R AL LF
Sbjct: 351 CSD-IIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGC-VQNELVRDALDLF 408

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           + M +  ++P+  T+ ++L A +    + +       +T   G    L+    +V +Y +
Sbjct: 409 KRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKT-GFMSSLDAATGLVHVYSK 467

Query: 562 AGLLNKAKEI---ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
            G L  A +I   I +   +    +W  L+    +H   G G  A +  +E
Sbjct: 468 CGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH---GDGHNALQVFME 515



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 173/356 (48%), Gaps = 34/356 (9%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           Y S+L        +   + +H  +      S  + + L   Y   G +  AR+LFD+M +
Sbjct: 18  YQSLLNHYAATQSISKTKALHCHVITGGRVSGHILSTLSVTYALCGHIAYARKLFDEMPQ 77

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
              +S+N +I  Y   GL+ +A  +F+ M  EG++            C+  G        
Sbjct: 78  SSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIK------------CVPDG-------- 117

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
                   TY   VA   G      + ++ LG  IHG  +R  +G  + V+NAL+ MY  
Sbjct: 118 -------YTY-PFVAKAAG-----ELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMN 164

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
              +  A  +F +   + +I+WN+M+SGY       ++  +F  M   GV+P++ TI S+
Sbjct: 165 FGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSM 224

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           LP+C  +  L+ G+  H  ++      + + + N+LV MY + G++ EA+ VF  M RRD
Sbjct: 225 LPVCGHLKGLEMGRNVH-KLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRD 283

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            +T+T +I GY   G+   AL+L   M    ++P+ VT+ +++SAC  +  + +G+
Sbjct: 284 VITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGK 339


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 328/622 (52%), Gaps = 37/622 (5%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           +V  SF   +  C + + ++ G Q+H   + LG E +P +   L+T Y+   L  +A  +
Sbjct: 254 LVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENV 313

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +  +++    WN +IS YV +G   + L +YKQM+  +I  D+ T  +VL +C  +   
Sbjct: 314 FDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSY 373

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           DFGR++H+  +    + ++ + +AL++MY K G  D A  +F+ +  RD V+W +M    
Sbjct: 374 DFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSM---- 429

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                                         I+G C +   +   LE  + M       DS
Sbjct: 430 ------------------------------ISGFC-QNRKYMEALEFYNSMTVYGEKPDS 458

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 + AC+ +  + LG  IHG A++    +   V ++L+ MYS+    + +  +F  
Sbjct: 459 DIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSD 518

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              K+++ WNS++S Y      + S  LF +M + G+ P+ V+I S+L   + VA L+ G
Sbjct: 519 MPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKG 578

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H Y++R+ + ++ L L N+L++MY + G +  A+ +F  M + + VT+  +IAG G 
Sbjct: 579 KAVHGYLIRQRIPSD-LQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGS 637

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G+   A+ LF+EM    I PD +T +++L++C+H G + EG K F+ MT  +GI P++E
Sbjct: 638 HGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRME 697

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+  +VDL GRAG L+ A   +  +P  P  ++W +LL +C++H N  +G+ AA KLL+ 
Sbjct: 698 HYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDI 757

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P     YV + N+Y      D+ A +R  M++ G++K PGC+W++ GN    F   D+S
Sbjct: 758 EPSRGSNYVQLLNLYGENELQDRAANLRASMKEKGLKKTPGCSWIEVGNSIDVFFSGDSS 817

Query: 671 NVQAQEIYPLLGGLTELMKDAG 692
           + +  EIY LL  L   M+  G
Sbjct: 818 SPRTIEIYDLLNSLRRNMRKKG 839



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/544 (22%), Positives = 236/544 (43%), Gaps = 70/544 (12%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL-EKN 108
           +G    A + ++R  + A        ++  ++  CG +  L  GK +H+  I  G    +
Sbjct: 30  QGQYVDALQFYSRNPLNATRF-----TYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSD 84

Query: 109 PVLVPKLVTFYASFSLYNNACFL--------VENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           P +   L+ FY     + NA  +        V   ++ +   WN +++ Y R G   E +
Sbjct: 85  PYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTF---WNSIVNGYFRFGHKKEGI 141

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMY 219
             + +MQ   +R D ++   +L A    +   + + +H   +        F+ + L+ MY
Sbjct: 142 AQFCRMQLFGVRPDAYSLCILLGASDGHL--GYAKQIHGYSVRKVFYGDPFLESGLIYMY 199

Query: 220 GKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
              G+   A RLF ++ ++ + V+WN MI  +   GLW+ + ++++  + E V+      
Sbjct: 200 FSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVK------ 253

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                                        L S +    L AC     +  G ++H   V+
Sbjct: 254 -----------------------------LVSASFTSTLSACCQGEFVSFGMQVHCDLVK 284

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
             +     V  +L+TMYS+CK +  A  +F   + K    WN+M+S Y     + +   +
Sbjct: 285 LGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKI 344

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           +++M    + P+ +T  ++L  C  V +   G+  H  +++R +   ++ L ++L+ MY+
Sbjct: 345 YKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPI-QSNVALQSALLTMYS 403

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
           + G   +A S+F+ +  RD V + S+I+G+    +   AL+ +  M     KPD   M +
Sbjct: 404 KCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMAS 463

Query: 519 VLSACSHSGLVVEGQKQFERMTSIYG--IFPQLEH----FACMVDLYGRAGLLNKAKEII 572
           V+SAC+       G K      +I+G  I   LE      + +VD+Y +      +  + 
Sbjct: 464 VVSACT-------GLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVF 516

Query: 573 TKMP 576
           + MP
Sbjct: 517 SDMP 520



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 195/454 (42%), Gaps = 58/454 (12%)

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWS 208
           V+ G Y +AL  Y +      R   FTYPS+LKACG + ++ +G+ +HS I         
Sbjct: 28  VQQGQYVDALQFYSRNPLNATR---FTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSD 84

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLE-----RDAVSWNTMISAYASKGLWKEAFQLF 263
            ++  +L++ Y K G    A ++FDK+ E     +D   WN++++ Y   G  KE    F
Sbjct: 85  PYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQF 144

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
             MQ  GV                                     D+ +  I LGA    
Sbjct: 145 CRMQLFGVRP-----------------------------------DAYSLCILLGASD-- 167

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK-SIITWNSM 382
           G L   K+IHG +VR  +     + + LI MY  C     A+ LFK   +K +++ WN M
Sbjct: 168 GHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVM 227

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           + G+      E S  ++       V+    +  S L  C +   +  G + HC +++   
Sbjct: 228 IGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGF 287

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            N+  +   SL+ MY++   V +A++VFD +S +    + ++I+ Y   G     LK+++
Sbjct: 288 ENDPYVC-TSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYK 346

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI----YGIFPQLEHFACMVDL 558
           +M   QI PD +T   VLS+C      + G   F R+         I   +   + ++ +
Sbjct: 347 QMKVLQIPPDSLTATNVLSSC-----CLVGSYDFGRLIHAELVKRPIQSNVALQSALLTM 401

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           Y + G  + A  I   +      A  + + G CQ
Sbjct: 402 YSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQ 435


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 306/604 (50%), Gaps = 28/604 (4%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP-------- 140
           ++ Q KQ+ A     GL        +L+ F          C L ++ +I Y         
Sbjct: 64  SMFQLKQIQAHITCTGLMNQIFPASRLLAF----------CALSDSGDIHYAHLIFDQTE 113

Query: 141 LP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           LP    WN +I  Y +    +     ++QM   R   D+ ++   LKACG+  +   G  
Sbjct: 114 LPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMA 173

Query: 197 VHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           VHS I     +  LFV N L+  Y + G +  AR++FD+   +D V+W TMI+ YA    
Sbjct: 174 VHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNW 233

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EA  LF  M    V+ N +T   +   C + G+ +    L   +R ++          
Sbjct: 234 LDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNA 293

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L      G L   +EI  +  R     + ++ N     Y++  DL  A  LF    E++
Sbjct: 294 MLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNG----YAKNGDLGSARKLFDEMPERN 349

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQHGKEFH 434
           I++WN+M++GY+      E+  LF  M    G+ P   T+  +L    ++  L+ G+E H
Sbjct: 350 IVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIH 409

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
           C  + +      L+L N++++MYA+ G +  A  +F  M  ++ V++ S+I+ Y   G  
Sbjct: 410 CNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHA 469

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           + AL LF++M  + +KPDH+T + VLSACS+ G V EGQ  FE M + +G+ P+ EH+AC
Sbjct: 470 KKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYAC 529

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL  R GLL +A E+I++MP   +   W  LL AC+ H N  + + A EKLLE  PE+
Sbjct: 530 MVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPED 589

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           SG Y L+AN+ A    W  +  VR  MR+ GV+K+PG + ++    F  FLV DTS+ ++
Sbjct: 590 SGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHEFLVADTSHTRS 649

Query: 675 QEIY 678
            EIY
Sbjct: 650 SEIY 653



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 213/443 (48%), Gaps = 28/443 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K +    + S  F  F ++    A  D    SF   +  CG+      G  +H+     
Sbjct: 124 IKGYCKANHPSMGFSFFRQMIRNRAEFDS--GSFVFALKACGQFAEKIVGMAVHSVIWKR 181

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G + +  +   L+  Y        A  + + S+++  + W  +I+ Y R+ +  EA+ ++
Sbjct: 182 GFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALF 241

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID----ACHEWSLFVHNALVSMY 219
             M S  ++ +  T  ++L AC +  D + G+ +H  I      C   SL + NA++ MY
Sbjct: 242 NSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITC---SLNLLNAMLDMY 298

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G +  AR +F+ M  RD  SW ++++ YA  G    A +LF EM E     N+++WN
Sbjct: 299 VKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPER----NIVSWN 354

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVR 338
            +  G  +       LEL   M      + +  T++  L A   +G L++G+EIH + V 
Sbjct: 355 AMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVN 414

Query: 339 GCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
               +   + +NA++ MY++C  +  A  LF    EK++++WNSM+S Y     A+++  
Sbjct: 415 KIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALT 474

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF-----HCYILRRAMFNEHLLLWNS 452
           LF +M  SG++P+++T   +L  C+    +  G+       +C+ +      EH   +  
Sbjct: 475 LFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPK--REH---YAC 529

Query: 453 LVEMYARSGKVPEAKSVFDLMSR 475
           +V++ +R G + EA   ++L+SR
Sbjct: 530 MVDLLSRVGLLKEA---YELISR 549


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 185/600 (30%), Positives = 304/600 (50%), Gaps = 50/600 (8%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           A G QLH+ A+  GL  N      L+  YA      +AC L +    R  + WN L++ Y
Sbjct: 118 ALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGY 177

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE----MMDVDFGRVVHSCIDACHE 206
           V  G  A A+ ++ +M+      D  T+ ++L    +    +M    G++V         
Sbjct: 178 VESGKVAPAVQLFVEMEREGFLPDEATFAALLTVVNDSTCFLMHQLHGKIV----KYGSA 233

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGLWKEAFQLFVE 265
             L V NA ++ Y + G +  +RR+FD++ +R D +SWN M+ AYA+ G+  EA + F  
Sbjct: 234 LGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFAS 293

Query: 266 -MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
            M+  GV+ ++ ++ +I   C    +  G +                             
Sbjct: 294 MMRASGVQPDMYSFTSIISACAEHRDHGGTV----------------------------- 324

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD---LRHAYILFKMTAEKSIITWNS 381
                  IHG   +  +    +V NALI MY+R  +   +  AY  F     K  ++WNS
Sbjct: 325 -------IHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNS 377

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ML+GY+    + ++   FR M    +  +    ++ L  C+ +A L+ G++ H  ++R  
Sbjct: 378 MLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSG 437

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            F  +  + +SL+ MY++SG + +A   F+   +   V + S++ GY   G+ +    LF
Sbjct: 438 -FASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLF 496

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
            +M + ++  DH+T V +++ACSH+GLV EG +    M S YGI  ++EH+AC +DLYGR
Sbjct: 497 NQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGR 556

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG L+KAKE+I  MP+ P + +W TLLGAC++H N  +    A  LLE  P     YVL+
Sbjct: 557 AGQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLLEAEPRQHSTYVLL 616

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +NMY+  G W   A V+  M++ G+ K+PG +W++  N    F  +D S+ +  EIY +L
Sbjct: 617 SNMYSGLGMWSDRAIVQKEMKNKGLSKVPGWSWIEVKNEVHSFNAEDGSHPRMDEIYEML 676



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 194/474 (40%), Gaps = 81/474 (17%)

Query: 135 SNIRYPLPWNLLISLY--------------------------------VRDGFYAEALCV 162
           S +  P PWN L++ Y                                V  G +  A  +
Sbjct: 29  SGVTSPTPWNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRL 88

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
            + M  R +  + F   S L++   M     G  +HS  + A    ++F   AL+ MY K
Sbjct: 89  LRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAK 148

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G+   A RLFD M ER+ VSWN +++ Y   G    A QLFVEM+ EG           
Sbjct: 149 CGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREG----------- 197

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                  E    ++ TV+    C       L  ++HG  V+  Y
Sbjct: 198 -------------------FLPDEATFAALLTVVNDSTC------FLMHQLHGKIVK--Y 230

Query: 342 GEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKS-IITWNSMLSGYTHLDCAEESAFL 398
           G      V NA IT YS+C  L ++  +F    ++S +I+WN+ML  Y       E+   
Sbjct: 231 GSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRF 290

Query: 399 FREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           F  M R SGV+P+  +  SI+  CA   +  HG      ++ +  F     + N+L+ MY
Sbjct: 291 FASMMRASGVQPDMYSFTSIISACAE--HRDHGGTVIHGLVSKNGFEGVTHVCNALIAMY 348

Query: 458 ARSGK---VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
            R  +   + +A   FD +  +D V++ S++ GY   G    AL+ F  M    I  D  
Sbjct: 349 TRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEY 408

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
              A L +CS   L+  G +Q   +    G        + ++ +Y ++G+L+ A
Sbjct: 409 AFSAALRSCSDLALLRLG-RQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDA 461



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 5/233 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS---LYNNACFLV 132
           SF  II  C + +    G  +H      G E    +   L+  Y  FS   +  +A    
Sbjct: 306 SFTSIISACAEHRDHG-GTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCF 364

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           ++  ++  + WN +++ Y + G  A+AL  ++ MQS  I  D + + + L++C ++  + 
Sbjct: 365 DSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLR 424

Query: 193 FGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            GR +H   I +    + FV ++L+ MY K G +D A + F++  +  +V WN+M+  YA
Sbjct: 425 LGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYA 484

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
             G  +    LF +M E  V ++ IT+  +   C   G      E+L+ M ++
Sbjct: 485 QHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESR 537


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 173/520 (33%), Positives = 286/520 (55%), Gaps = 39/520 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y S+L  C     +  G+ VH+  I  C+  S+++   L+ +Y K   +  AR +FD+M 
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           +R+ VSW  MISAY+ +G   EA  LFVEM     E N  T+ TI   C  +  F+    
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFE---- 180

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                                           G++IH  A++  Y  +  V ++L+ MY+
Sbjct: 181 -------------------------------TGRQIHSIAIKRNYESHMFVGSSLLDMYA 209

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +   +  A+ +F    E+ ++   +++SGY  +   EE+  LFR++   G+  N VT AS
Sbjct: 210 KSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYAS 269

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L   + +A L HGK+ H ++LR   ++ +++L NSL++MY++ G V  A+ +FD M  R
Sbjct: 270 VLTALSGLAALNHGKQVHSHVLRSGQYS-YVVLLNSLIDMYSKCGNVCYARRIFDSMPER 328

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
             +++ +++ GY   G  R  L+LF+ M  +N++KPD +T +AVLS CSH  L   G + 
Sbjct: 329 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI 388

Query: 536 FERMTS-IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           F  M +   GI P + H+ C+VDL GRAG + +A + I KMP+ PT+A+W +LLG+C++H
Sbjct: 389 FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVH 448

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            +  IG    +KLLE  PEN+G YV+++N+YA+ G W+ +  +R  M++  V K PG +W
Sbjct: 449 SDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSW 508

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           V+   +   F   D ++ + +E+   +  L+   K+ GYV
Sbjct: 509 VELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYV 548



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 203/436 (46%), Gaps = 46/436 (10%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
            LK     G L +A      +++     +V  + +  I+  C   +A+ +G+++H   I 
Sbjct: 36  NLKTLCSSGQLKEAL-----LQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIK 90

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
                +  L  +L+  Y       +A  + +    R  + W  +IS Y + GF  EAL +
Sbjct: 91  TCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNL 150

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           + +M       ++FT+ ++L +C   +  + GR +HS  I   +E  +FV ++L+ MY K
Sbjct: 151 FVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAK 210

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G++  A  +F  + ERD V+   +IS YA  GL +EA +LF ++Q EG+  N +T+ ++
Sbjct: 211 SGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASV 270

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L A S + AL  GK++H   +R   
Sbjct: 271 -----------------------------------LTALSGLAALNHGKQVHSHVLRSGQ 295

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
             Y  + N+LI MYS+C ++ +A  +F    E++ I+WN+ML GY+    A E   LF+ 
Sbjct: 296 YSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKL 355

Query: 402 MFRSG-VEPNYVTIASILPLCARVANLQHGKE-FHCYILRRAMFNEHLLLWNSLVEMYAR 459
           M     V+P+ +T  ++L  C+       G E F+  +  +      +  +  +V++  R
Sbjct: 356 MREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGR 415

Query: 460 SGKVPEAKSVFDLMSR 475
           +G+V EA   FD + +
Sbjct: 416 AGRVEEA---FDFIKK 428


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 180/519 (34%), Positives = 274/519 (52%), Gaps = 41/519 (7%)

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           ++++   ++G++D A+ LFD++ E + VSWN MI+ Y    +  EA  LF  M       
Sbjct: 326 SMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFR---- 381

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           N I+W  +  G  R G  +  L  L  +  +       +      ACS++ AL+ GK++H
Sbjct: 382 NTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVH 441

Query: 334 GSAVR-GC-YGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSI-------------- 376
             AV+ GC +  Y  V NALIT+Y + + +     +F +MT + ++              
Sbjct: 442 SLAVKAGCQFNSY--VCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNL 499

Query: 377 ----------------ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
                           ++W +++S     D   E+  +FR M      PN   +  +L L
Sbjct: 500 FDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGL 559

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
              +   Q G++ H   ++  M +  L++ N+LV MY +       K VFD M  RD  T
Sbjct: 560 SGNLGAPQLGQQIHTIAIKLGM-DSGLVVANALVSMYFKCSSADSLK-VFDSMEERDIFT 617

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           + ++I GY   G GR A+++++ M    + P+ VT V +L ACSHSGLV EG + F+ M+
Sbjct: 618 WNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMS 677

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
           S YG+ P LEH+ACMVDL GRAG +  A+  I  MP  P S +W+ LLGAC+IH+N  IG
Sbjct: 678 SDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIG 737

Query: 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
             AAEKL    P N+G YV+++N+Y++ G WD++AKVR  M++ GV K PGC+W+   N 
Sbjct: 738 RRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNK 797

Query: 661 FSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
              F+  D  + Q Q IY  L  L  L+K  GYV   +F
Sbjct: 798 MHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDF 836



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 190/402 (47%), Gaps = 11/402 (2%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E N V    ++T Y    + + A  L      R  + W  +I+ Y R+G   +AL   + 
Sbjct: 349 EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQA 408

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           +  + +     +  S   AC  +  ++ G+ VHS  + A  +++ +V NAL+++YGK+  
Sbjct: 409 LHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRS 468

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +   R++FD+M  +D VS+N+ +SA     L+ EA  +F  M       +V++W TI   
Sbjct: 469 IGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSP----DVVSWTTIISA 524

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           C +       +E+   M  +    +     I LG   ++GA +LG++IH  A++      
Sbjct: 525 CAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSG 584

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V NAL++MY +C     +  +F    E+ I TWN++++GY       E+  +++ M  
Sbjct: 585 LVVANALVSMYFKCSSA-DSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVS 643

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +GV PN VT   +L  C+    +  G +F   +         L  +  +V++  R+G V 
Sbjct: 644 AGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQ 703

Query: 465 EAKS-VFDLMSRRDEVTYTSLIAGYGIQGE----GRVALKLF 501
            A+  ++D+    D V +++L+    I        R A KLF
Sbjct: 704 GAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLF 745



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 179/414 (43%), Gaps = 53/414 (12%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           NA+V+ Y + G + +AR+LFD M  RD  SWNTM++ Y    L +EA  LF  M E    
Sbjct: 130 NAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPER--- 186

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            N ++W  +  G +         ++   M  +    +    V  L A  H+G   + + I
Sbjct: 187 -NGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESI 245

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKD-LRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           H    +  +     V  A++  Y++  + L  A   F+  A ++  TW+++++  +    
Sbjct: 246 HVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGR 305

Query: 392 AEESAFLF-REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
            +++  ++ R+  +S       +  S+L   AR   +   K     IL   +   +++ W
Sbjct: 306 IDDAFAVYQRDPLKS-----VPSRTSMLTGLARYGRIDDAK-----ILFDQIHEPNVVSW 355

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+++  Y ++  V EA+ +F+ M  R+ +++  +IAGY   G    AL   + +++  + 
Sbjct: 356 NAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGML 415

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC--MVDLYGR------- 561
           P   ++ +   ACS+    +E  KQ   +    G   Q   + C  ++ LYG+       
Sbjct: 416 PSLSSLTSSFFACSNIE-ALETGKQVHSLAVKAGC--QFNSYVCNALITLYGKYRSIGSV 472

Query: 562 ------------------------AGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
                                     L ++A+++   MP +P    W T++ AC
Sbjct: 473 RQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP-SPDVVSWTTIISAC 525



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 159/382 (41%), Gaps = 92/382 (24%)

Query: 82  FCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL 141
           F C  ++AL  GKQ+H+ A+  G + N  +   L+T Y  +    +   + +   ++  +
Sbjct: 426 FACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTV 485

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC---------------- 185
            +N  +S  V++  + EA  V+  M S     D  ++ +++ AC                
Sbjct: 486 SYNSFMSALVQNNLFDEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIFRSM 541

Query: 186 -------------------GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
                              G +     G+ +H+  I    +  L V NALVSMY K    
Sbjct: 542 LHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSA 601

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D + ++FD M ERD  +WNT+I+ YA  GL +EA +++  M   GV  N +T        
Sbjct: 602 D-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVT-------- 652

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                F G+L                       ACSH G +  G +   S +   YG   
Sbjct: 653 -----FVGLLH----------------------ACSHSGLVDEGHQFFKS-MSSDYGLTP 684

Query: 346 NVRN--ALITMYSRCKDLRHA-YILFKMTAEKSIITWNSMLSG---YTHLDCAEESAFLF 399
            + +   ++ +  R  D++ A + ++ M  E   + W+++L     + +++    +A   
Sbjct: 685 LLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAA--- 741

Query: 400 REMFRSGVEP----NYVTIASI 417
            ++F   +EP    NYV +++I
Sbjct: 742 EKLF--SIEPSNAGNYVMLSNI 761



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 168/392 (42%), Gaps = 48/392 (12%)

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            +A +   G+ G++  AR +FD M  RD ++WN+MI AY + G+      L         
Sbjct: 36  QSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLA-------- 87

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV-------- 323
                  + I+GG LRTG       LLS         D+     G+G  + V        
Sbjct: 88  -------DAISGGNLRTGTI-----LLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTC 135

Query: 324 ----GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
               G + L +++  +        +    N ++T Y   + +  A  LF+   E++ ++W
Sbjct: 136 YVQNGDITLARKLFDAMPSRDVSSW----NTMLTGYCHSQLMEEARNLFERMPERNGVSW 191

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
             M+SGY  ++    +  +FR M   G+ P    + S+L     +      +  H  ++ 
Sbjct: 192 TVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHV-LVH 250

Query: 440 RAMFNEHLLLWNSLVEMYARS-GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +  F   +++  +++  Y +    +  A   F+ M+ R+E T++++IA     G    A 
Sbjct: 251 KTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAF 310

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            +++      + P   +M   L+  +  G + + +  F+++       P +  +  M+  
Sbjct: 311 AVYQRDPLKSV-PSRTSM---LTGLARYGRIDDAKILFDQIHE-----PNVVSWNAMITG 361

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           Y +  ++++A+++  +MP+  T + WA ++  
Sbjct: 362 YMQNEMVDEAEDLFNRMPFRNTIS-WAGMIAG 392



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 32/209 (15%)

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           + ++A I    R   L  A  +F     + II WNSM+  Y    C        R +  +
Sbjct: 34  SAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAY----CNNGMPDAGRSLADA 89

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFH----------------CYI------LRRAMF 443
               N  T   +L   AR   ++  +                   CY+      L R +F
Sbjct: 90  ISGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLF 149

Query: 444 N----EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG-IQGEGRVAL 498
           +      +  WN+++  Y  S  + EA+++F+ M  R+ V++T +I+GY  I+  GR A 
Sbjct: 150 DAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR-AW 208

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            +F  M    + P+   +V+VLSA  H G
Sbjct: 209 DMFRTMLCEGMTPEQPNLVSVLSAVRHLG 237



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
            R G++ EA+ VFD M  RD + + S+I  Y   G       L + ++   ++    T  
Sbjct: 44  GRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR----TGT 99

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
            +LS  + +G V + ++ F+ M    G+   +  +  MV  Y + G +  A+++   MP 
Sbjct: 100 ILLSGYARAGRVRDARRVFDGM----GVRNTVA-WNAMVTCYVQNGDITLARKLFDAMPS 154

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
              S+    L G C    ++ + E  A  L E  PE +G
Sbjct: 155 RDVSSWNTMLTGYC----HSQLME-EARNLFERMPERNG 188


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  312 bits (800), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 185/578 (32%), Positives = 295/578 (51%), Gaps = 49/578 (8%)

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
           +P P   + S    DG +  AL +   + +  +R D  +   ++K C     V  GR +H
Sbjct: 30  HPHPLVSIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIH 89

Query: 199 SCIDACHEW-------SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
             +  C          SLFV N+LVSMY KFG +D A  LF  M +R+ VSW T+++A A
Sbjct: 90  RHVSLCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALA 149

Query: 252 -SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
            + G  KEA +  VEM+ +GV  N  T++++                             
Sbjct: 150 NAPGRKKEALRFLVEMRRDGVAANSYTFSSV----------------------------- 180

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 LGAC   G L     +H   ++        VR++LI  Y +  DL     +F  
Sbjct: 181 ------LGACGTPGVLA---AMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDE 231

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
                ++ WNS+++G+        +  LF  M  SG   N  T+ S+L  C  +  L+ G
Sbjct: 232 MVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVG 291

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           ++ H ++L+   ++  L+L N+L++MY + G + +A ++F  M  RD ++++++I+G   
Sbjct: 292 RQVHAHVLK---YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQ 348

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G    ALK+F+ M      P+++TMV VL ACSH+GLV +G   F  M  ++GI P+ E
Sbjct: 349 NGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPERE 408

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H  CMVDL GRAG L++A + I +M + P S +W TLLGAC++H+N  +  +AA ++L+ 
Sbjct: 409 HCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKL 468

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            PE+ G  +L++N+YA    W    K    MRD GV+K PG +W++ G +   F+  + S
Sbjct: 469 EPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELS 528

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           +  +  I   L  L    KD GYV + EF  ++   E+
Sbjct: 529 HPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQ 566



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 17/211 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G+   A E F R++ +    +    +   ++  C  +  L  G+Q+HA    L  +
Sbjct: 247 FAQSGDGVGAMELFMRMKESGFLANQ--GTLTSVLRACTGMVMLEVGRQVHA--HVLKYD 302

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           ++ +L   L+  Y       +A  L    + R  + W+ +IS   ++G   EAL V+  M
Sbjct: 303 RDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLM 362

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF------VH-NALVSMY 219
           ++     +N T   VL AC     V+ G      +D      LF       H N +V + 
Sbjct: 363 KAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMD-----KLFGIQPEREHCNCMVDLL 417

Query: 220 GKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
           G+ G++D A +   +M  E D+V W T++ A
Sbjct: 418 GRAGKLDEAMKFIGEMKFEPDSVIWRTLLGA 448


>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
 gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
          Length = 706

 Score =  312 bits (800), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 208/650 (32%), Positives = 333/650 (51%), Gaps = 60/650 (9%)

Query: 96  LHACAIALGLEKNP----VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           LHA  +  G  ++P         L+  Y    L + A  L++ +  R    +  LIS + 
Sbjct: 48  LHAALLKSGALRSPQAPLAATNSLLHAYLQCGLLSRALRLLDGTPRRDAATYASLISAHC 107

Query: 152 RDGFYAEALCVYKQM-----QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA--- 203
           R G   +AL  +  M         +R + FT  +VL+ACG   D   GR+VH  + A   
Sbjct: 108 RLGAPLDALRAFLDMLDWGCSDAAVRPNEFTAAAVLQACGLARDERLGRMVHGYLVAGGF 167

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
           C +   FV  +LV+MY K G V  ARRL   +  RD VSW  +IS     G+ +E  ++F
Sbjct: 168 CGD--PFVVGSLVNMYAKAGDVVSARRLVLGLPCRDVVSWTAIISGCVLNGMLEEGLEVF 225

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTG------------------NFKGVLELLSRMRTQE 305
           V M E+GV  N +T  ++   C   G                  +   V+  L  M  + 
Sbjct: 226 VMMLEDGVLPNNVTMLSVIQACSLMGASELFSPVHALVVLLELEHDASVVNSLIMMYAKN 285

Query: 306 TYL---------------------DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
            ++                     D +A V  L  C+  G++K G  +H   ++      
Sbjct: 286 GFVEEAIWLFRGFYLKSGNVCSNEDVLAAV--LYGCTISGSVKNGVGVHAHTIKIGAFPS 343

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
            ++ N+L+ MY+R + +  A+ +F+    K I++WN+++S     D   E+  LF  +  
Sbjct: 344 ISIENSLMGMYARFEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNEAMELFSVLHA 403

Query: 405 S--GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
           +  G+ P++VT+ SIL  C+    L  G+  H YI++   F   + + N+L+ MYA+ G+
Sbjct: 404 AAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSG-FVYDVSICNALITMYAKLGR 462

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLS 521
           +  A+ +F+ M  +D V++ S+I  YG+ G+G +AL++F ++ +     P+ +T V+V+S
Sbjct: 463 IDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPVPNAITFVSVIS 522

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSHSGL+ EG K FE M   + I P ++H+AC+VDL GR+G   +A+E I  MP  P S
Sbjct: 523 ACSHSGLISEGYKCFESMGRDHSIEPSMDHYACVVDLLGRSGRFAEAEEFIRDMPVHPNS 582

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           ++W  LL ACQ+H N  + E AA++L    PE+  + V ++N YA+ G W   AK+RT M
Sbjct: 583 SIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSLSNTYASAGRWRDAAKIRTEM 642

Query: 642 RDLGVRKIPGCAWVDAGNVFS-PFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           R +G+RK  G ++VD G V S  F+  DT +  A+EIY +   +   M D
Sbjct: 643 RRVGLRKETGWSFVDVGGVESFKFVSADTRHHDAEEIYSVWHSMNRHMAD 692



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 208/479 (43%), Gaps = 46/479 (9%)

Query: 78  AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI 137
           A ++  CG  +    G+ +H   +A G   +P +V  LV  YA      +A  LV     
Sbjct: 140 AAVLQACGLARDERLGRMVHGYLVAGGFCGDPFVVGSLVNMYAKAGDVVSARRLVLGLPC 199

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W  +IS  V +G   E L V+  M    +  +N T  SV++AC  M   +    V
Sbjct: 200 RDVVSWTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSVIQACSLMGASELFSPV 259

Query: 198 HSCI---DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD-----------AVSW 243
           H+ +   +  H+ S  V N+L+ MY K G V+ A  LF     +            AV +
Sbjct: 260 HALVVLLELEHDAS--VVNSLIMMYAKNGFVEEAIWLFRGFYLKSGNVCSNEDVLAAVLY 317

Query: 244 NTMIS-----------------AYASKGLWKEAFQLFVEMQE--------EGVEV-NVIT 277
              IS                 A+ S  +      ++   ++        EG++V ++++
Sbjct: 318 GCTISGSVKNGVGVHAHTIKIGAFPSISIENSLMGMYARFEQIDAAHFVFEGMKVKDIVS 377

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYL--DSVATVIGLGACSHVGALKLGKEIHGS 335
           WNTI     ++      +EL S +      L  D V  +  L ACS+ G L  G+ +HG 
Sbjct: 378 WNTIISCLAKSDRVNEAMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGY 437

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
            ++  +    ++ NALITMY++   +  A ++F+    K +++WNSM++ Y        +
Sbjct: 438 IMKSGFVYDVSICNALITMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHLA 497

Query: 396 AFLFREMFRSGVE-PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
             +F ++  +G   PN +T  S++  C+    +  G +    + R       +  +  +V
Sbjct: 498 LRVFHQLKDAGTPVPNAITFVSVISACSHSGLISEGYKCFESMGRDHSIEPSMDHYACVV 557

Query: 455 EMYARSGKVPEAKS-VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           ++  RSG+  EA+  + D+    +   +  L+A   + G   +A K  +E++  + + D
Sbjct: 558 DLLGRSGRFAEAEEFIRDMPVHPNSSIWGPLLAACQLHGNVDLAEKAAKELSALEPESD 616



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 126/251 (50%), Gaps = 9/251 (3%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           D  A +++ C    ++  G  +HA  I +G   +  +   L+  YA F   + A F+ E 
Sbjct: 310 DVLAAVLYGCTISGSVKNGVGVHAHTIKIGAFPSISIENSLMGMYARFEQIDAAHFVFEG 369

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR--IRGDNFTYPSVLKACGEMMDVD 192
             ++  + WN +IS   +     EA+ ++  + +    +  D  T  S+L+AC     + 
Sbjct: 370 MKVKDIVSWNTIISCLAKSDRVNEAMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLH 429

Query: 193 FGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G+++H  I  +   + + + NAL++MY K G++D A  +F++M  +D VSWN+MI+AY 
Sbjct: 430 QGQMLHGYIMKSGFVYDVSICNALITMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYG 489

Query: 252 SKGLWKEAFQLFVEMQEEGVEV-NVITWNTIAGGCLRTG----NFKGVLELLSRMRTQET 306
             G    A ++F ++++ G  V N IT+ ++   C  +G     +K   E + R  + E 
Sbjct: 490 MHGDGHLALRVFHQLKDAGTPVPNAITFVSVISACSHSGLISEGYK-CFESMGRDHSIEP 548

Query: 307 YLDSVATVIGL 317
            +D  A V+ L
Sbjct: 549 SMDHYACVVDL 559



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 102/263 (38%), Gaps = 38/263 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
            A    +++A E F+ +   A        +   I+  C     L QG+ LH   +  G  
Sbjct: 385 LAKSDRVNEAMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSGFV 444

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L+T YA     + A  + E  +I+  + WN +I+ Y   G    AL V+ Q+
Sbjct: 445 YDVSICNALITMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQL 504

Query: 167 QSRRIRGDN-FTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGK-- 221
           +       N  T+ SV+ AC     +  G      +   H  E S+  +  +V + G+  
Sbjct: 505 KDAGTPVPNAITFVSVISACSHSGLISEGYKCFESMGRDHSIEPSMDHYACVVDLLGRSG 564

Query: 222 ------------------------------FGQVDVARRLFDKM--LERDAVSWNTMIS- 248
                                          G VD+A +   ++  LE ++  W   +S 
Sbjct: 565 RFAEAEEFIRDMPVHPNSSIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSLSN 624

Query: 249 AYASKGLWKEAFQLFVEMQEEGV 271
            YAS G W++A ++  EM+  G+
Sbjct: 625 TYASAGRWRDAAKIRTEMRRVGL 647


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  312 bits (800), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 194/562 (34%), Positives = 296/562 (52%), Gaps = 56/562 (9%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           WN+ +        + E++ +Y+ M       D F++P +LK+C  +     G+ +H    
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLH---- 73

Query: 203 ACH------EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD--AVSWNTMISAYASKG 254
            CH      E   FV  AL+SMY K G V+ AR++F++        V +N +IS Y +  
Sbjct: 74  -CHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANS 132

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              +A  +F  M+E GV V                                   DSV T+
Sbjct: 133 KVSDAAFMFRRMKETGVSV-----------------------------------DSV-TI 156

Query: 315 IGL-GACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMT 371
           +GL   C+    L LG+ +HG  V+G  G Y  V   N+ ITMY +C  +     LF   
Sbjct: 157 LGLVPLCTVPEYLWLGRSLHGECVKG--GTYSEVAVLNSFITMYMKCGSVESGRRLFDEM 214

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             K +ITWN+++SGY+    A +   LF +M  SGV P+  T+ S+L  CA +   + G+
Sbjct: 215 PVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQ 274

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           E    ++    F  ++ L N+L+ MYAR G + +A++VFD+M  +  V++T++I  YG+ 
Sbjct: 275 EVG-ELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMH 333

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G   L LF++M K  I+PD    V VLSACSHSGL  +G + F  M   Y + P  EH
Sbjct: 334 GMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEH 393

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           ++C+VDL GRAG L++A E I  MP  P  A+W  LLGAC+IH+N  + E A  K++E  
Sbjct: 394 YSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFE 453

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P N GYYVL++N+Y+ +   + + ++R  MR+   RK PG ++V+       FL  D S+
Sbjct: 454 PMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSH 513

Query: 672 VQAQEIYPLLGGL-TELMKDAG 692
            Q +E++ +L  L T +M+ AG
Sbjct: 514 EQTEEVHRMLDELETSVMELAG 535



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 198/438 (45%), Gaps = 50/438 (11%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L++ A +   +++   +  +  + +S D    SF  I+  C  +     G+QLH   I  
Sbjct: 22  LRELAYQSLFTESISLYRSMLRSGSSPDAF--SFPFILKSCASLSLPVSGQQLHCHVIRG 79

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENS--NIRYPLPWNLLISLYVRDGFYAEALC 161
           G E  P ++  L++ Y    L  +A  + E +  + +  + +N LIS Y  +   ++A  
Sbjct: 80  GCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAF 139

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
           ++++M+   +  D+ T   ++  C     +  GR +H  C+       + V N+ ++MY 
Sbjct: 140 MFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYM 199

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G V+  RRLFD+M  +  ++WN +IS Y+  GL  +  +LF +M+  GV  +  T  +
Sbjct: 200 KCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVS 259

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +                                   L +C+H+GA K+G+E+        
Sbjct: 260 V-----------------------------------LSSCAHLGAKKIGQEVGELVEANG 284

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +     + NALI+MY+RC +L  A  +F +   KS+++W +M+  Y      E    LF 
Sbjct: 285 FAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFD 344

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL-----LWNSLVE 455
           +M + G+ P+      +L  C+       G E     L RAM  E+ L      ++ LV+
Sbjct: 345 DMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE-----LFRAMKREYKLEPGPEHYSCLVD 399

Query: 456 MYARSGKVPEAKSVFDLM 473
           +  R+G++ EA    D M
Sbjct: 400 LLGRAGRLDEAMEFIDSM 417



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 4/201 (1%)

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +WN  L    +     ES  L+R M RSG  P+  +   IL  CA ++    G++ HC++
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE--VTYTSLIAGYGIQGEGR 495
           +R     E  +L  +L+ MY + G V +A+ VF+      +  V Y +LI+GY    +  
Sbjct: 77  IRGGCEAEPFVL-TALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A  +F  M +  +  D VT++ ++  C+    +  G+          G + ++      
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVK-GGTYSEVAVLNSF 194

Query: 556 VDLYGRAGLLNKAKEIITKMP 576
           + +Y + G +   + +  +MP
Sbjct: 195 ITMYMKCGSVESGRRLFDEMP 215


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  312 bits (800), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 187/547 (34%), Positives = 285/547 (52%), Gaps = 47/547 (8%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC----HEWSLFVHNALVSMYGKFGQVD 226
           +R D  T  SVL A  E+ DV  GR VHS  + C    HE  L     L+S+Y K G V+
Sbjct: 208 VRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVL---TGLISLYSKCGDVE 264

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            AR LFD M + D V++N +IS Y+  G+   +  LF E+   G+  N            
Sbjct: 265 SARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPN------------ 312

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                  S   V  +   S  G   L + +HG  ++  +     
Sbjct: 313 -----------------------SSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSP 349

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V  A+ T++ R  D+  A   F    EK++ +WN+M+SGY      E +  LF +M +  
Sbjct: 350 VSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLN 409

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           V PN +TI+S L  CA++  L  GK  H  I+       ++ +  +L++MYA+ G + EA
Sbjct: 410 VRPNPITISSTLSACAQLGALSLGKWLH-RIITEEDLEPNVYVMTALIDMYAKCGSISEA 468

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + +F+ M  ++ V++ ++IAGYG+ G+G  ALKL+++M    + P   T ++VL ACSH 
Sbjct: 469 RRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHG 528

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT-SAMWA 585
           GLV EG K F  MT  Y I P +EH  CMVDL GRAG L +A E+I++ P +     +W 
Sbjct: 529 GLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWG 588

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LLGAC +H+++ + + A++KL E  PENSGYYVL++N++ +   + + A VR   +   
Sbjct: 589 ALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRK 648

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE---FCSE 702
           + K PG   ++ GN    F+  D ++ Q++ IY  L  LT  M +AGY  + E   +  E
Sbjct: 649 LVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVE 708

Query: 703 EEIVEEI 709
           EE  E +
Sbjct: 709 EEEKEHM 715



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 176/366 (48%), Gaps = 40/366 (10%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           FV +AL  +Y    +VD AR++FD +   D V WNT+++  +      EA + F  M  +
Sbjct: 150 FVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCD 205

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G                              +R   T L SV     L A + V  + +G
Sbjct: 206 G-----------------------------SVRPDATTLASV-----LPAAAEVADVTMG 231

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           + +H  A +    E+E+V   LI++YS+C D+  A  LF M  +  ++ +N+++SGY+  
Sbjct: 232 RCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVN 291

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
                S  LF E+   G+ PN  T+ +++P+ +   +    +  H ++L+   F  +  +
Sbjct: 292 GMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSG-FTANSPV 350

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
             ++  ++ R   +  A+  FD M  +   ++ ++I+GY   G   +A+ LFE+M K  +
Sbjct: 351 STAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNV 410

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           +P+ +T+ + LSAC+  G +  G K   R+ +   + P +     ++D+Y + G +++A+
Sbjct: 411 RPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEAR 469

Query: 570 EIITKM 575
            I   M
Sbjct: 470 RIFNTM 475



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 142/335 (42%), Gaps = 40/335 (11%)

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V +AL  +Y     + HA  +F        + WN++L+G +  +  E  A   R +    
Sbjct: 151 VASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVESFA---RMVCDGS 207

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           V P+  T+AS+LP  A VA++  G+  H +   +    EH  +   L+ +Y++ G V  A
Sbjct: 208 VRPDATTLASVLPAAAEVADVTMGRCVHSFA-EKCGLAEHEHVLTGLISLYSKCGDVESA 266

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA-------- 518
           + +FD+M + D V Y +LI+GY + G    ++ LF E+    + P+  T+VA        
Sbjct: 267 RCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPF 326

Query: 519 ---VLSACSHSGLVVEG-----------------QKQFERMTSIYGIFPQ--LEHFACMV 556
              +L+ C H  ++  G                     E     +   P+  +E +  M+
Sbjct: 327 GHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMI 386

Query: 557 DLYGRAGLLNKAK---EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
             Y + GL   A    E + K+   P     ++ L AC       +G+W    + E   E
Sbjct: 387 SGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLE 446

Query: 614 NSGYYVLIA--NMYAATGCWDKLAKVRTCMRDLGV 646
               YV+ A  +MYA  G   +  ++   M +  V
Sbjct: 447 -PNVYVMTALIDMYAKCGSISEARRIFNTMDNKNV 480



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 1/148 (0%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI- 201
           WN +IS Y ++G    A+ +++QM    +R +  T  S L AC ++  +  G+ +H  I 
Sbjct: 382 WNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIIT 441

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
           +   E +++V  AL+ MY K G +  ARR+F+ M  ++ VSWN MI+ Y   G   EA +
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALK 501

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           L+ +M +  +     T+ ++   C   G
Sbjct: 502 LYKDMLDAHLLPTSATFLSVLYACSHGG 529



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C ++ AL+ GK LH       LE N  ++  L+  YA     + A  +    + +  + W
Sbjct: 424 CAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSW 483

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+ Y   G  AEAL +YK M    +   + T+ SVL AC     V+ G         
Sbjct: 484 NAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEG--------- 534

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT-MISAYASKGLWKEAFQL 262
              W +F                  R + D       +   T M+      G  KEAF+L
Sbjct: 535 ---WKVF------------------RSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFEL 573

Query: 263 FVEMQEEGVEVNVITWNTIAGGCL 286
             E  +  V   V  W  + G C+
Sbjct: 574 ISEFPKSAVGPGV--WGALLGACM 595


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 313/615 (50%), Gaps = 40/615 (6%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           AL +    H  AI  G   +      +++ YA       A  +   ++ R  + WN +I+
Sbjct: 14  ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIA 73

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEW 207
            +V  G +  AL   K M+      D +++ S+LK    +  V+ G+ VHS  +   +E 
Sbjct: 74  GFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEG 133

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           ++F  +AL+ MY K  +V+ A  +F  +  R++V+WN +IS YA  G    AF L   M+
Sbjct: 134 NVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCME 193

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
            EGVE++              G F  +L LL                            K
Sbjct: 194 LEGVEID-------------DGTFAPLLTLLDDPDLH----------------------K 218

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK---MTAEKSIITWNSMLS 384
           L  ++H   V+        V NA+IT YS C  +  A  +F     T +   ++WNS+L+
Sbjct: 219 LTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILT 278

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           G++    +E++   F  M    V  ++   +++L  C+ +A LQ G++ H  +L+   F 
Sbjct: 279 GFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSG-FE 337

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            +  + +SL+ MY++ G + +A+  FD   +   + + SLI GY   G G++AL LF  M
Sbjct: 338 PNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLM 397

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
              ++K DH+T VAVL+ACSH GLV EG    + M S YGI P++EH+ACM+DL GRAG 
Sbjct: 398 KDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGR 457

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L++AK +I  MP+ P + +W TLLGAC+   +  +    A  LLE  PE    YVL+++M
Sbjct: 458 LDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSM 517

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           +     W++ A ++  M++ GV+K+PG +W++  N    F  +D S+   +EIY  LG L
Sbjct: 518 FGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGEL 577

Query: 685 TELMKDAGYVVKEEF 699
            E ++   YV   EF
Sbjct: 578 MEEIRRLDYVANSEF 592



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 112/485 (23%), Positives = 211/485 (43%), Gaps = 45/485 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   GN   A E    ++    + D    SF  I+     V  +  G+Q+H+  + +G E
Sbjct: 75  FVNLGNFETALEFLKSMKRYGFAVDGY--SFGSILKGVACVGYVEVGQQVHSMMVKMGYE 132

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N      L+  YA      +A  + ++ NIR  + WN LIS Y + G    A  +   M
Sbjct: 133 GNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCM 192

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQV 225
           +   +  D+ T+  +L    +         VH+ I      S   V NA+++ Y + G +
Sbjct: 193 ELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSI 252

Query: 226 DVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           + A R+FD  +E    D VSWN++++ ++  GL ++A + F                   
Sbjct: 253 EDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFF------------------- 293

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                             MR+Q   +D  A    L +CS +  L+LG+++H   ++  + 
Sbjct: 294 ----------------ENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFE 337

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V ++LI MYS+C  +  A   F  T + S I WNS++ GY      + +  LF  M
Sbjct: 338 PNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLM 397

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
               V+ +++T  ++L  C+ +  ++ G  F   +         +  +  ++++  R+G+
Sbjct: 398 KDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGR 457

Query: 463 VPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVL 520
           + EAK++ + M    D + + +L+      G+  +A ++   +   +++P +H T V + 
Sbjct: 458 LDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHL--LELEPEEHCTYVLLS 515

Query: 521 SACSH 525
           S   H
Sbjct: 516 SMFGH 520


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 192/623 (30%), Positives = 320/623 (51%), Gaps = 51/623 (8%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LPWNLLISL 149
           +  QLHA +I      +P +  +L+  YA   + N          I+ P  + WNLLI  
Sbjct: 30  EANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKC 89

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWS 208
           Y+ +    +A+ ++ ++    +  D+FT P VLK C  +  +  G+ +H  +        
Sbjct: 90  YIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVD 148

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
            FV ++LVSMY K G++++ R++FD+M ++D VSWN++I  YA  G      +L +EM E
Sbjct: 149 KFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCG----EIELALEMFE 204

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           E  E +  +W  +  G  ++G  +   ++  RM  +    +SV+                
Sbjct: 205 EMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIR----NSVSW--------------- 245

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
                               NA+I  Y +  D   A  LF    E+S++TWNSM++GY  
Sbjct: 246 --------------------NAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYER 285

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
                ++  LF  M R  + PNY TI   +   + + +L  G+  H YI++   F    +
Sbjct: 286 NKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSG-FKTDGV 344

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           L   L+EMY++ G V  A  VF  + ++    +TS+I G G+ G     L+LF+EM +  
Sbjct: 345 LGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTG 404

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           +KP  +T + VL+ACSH+G   +  + F+ MT  YGI P +EH+ C++D+  RAG L +A
Sbjct: 405 LKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEA 464

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
           K+ I +MP      +W +LL   + H N  +GE+AA+ L++  P+ +G YV+++NMYAA 
Sbjct: 465 KDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAA 524

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           G W+K+ +VR  M+  G++K PGC+ ++       F+V D S+ Q +EIY  L  + + +
Sbjct: 525 GLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKL 584

Query: 689 KDAGYVVKEE---FCSEEEIVEE 708
             AG++        C EE+  +E
Sbjct: 585 NVAGHIPDTTQVLLCLEEDNEKE 607



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 206/457 (45%), Gaps = 53/457 (11%)

Query: 71  DVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS---FSLY 125
           D V DSF    ++  C ++ AL +GKQ+H   + +G   +  ++  LV+ Y+      L 
Sbjct: 109 DFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELC 168

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
                 +E+ ++   + WN LI  Y R G    AL ++++M  +    D+F+        
Sbjct: 169 RKVFDRMEDKDV---VSWNSLIDGYARCGEIELALEMFEEMPEK----DSFS-------- 213

Query: 186 GEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
                                W++     L+    K G+++ AR +FD+M  R++VSWN 
Sbjct: 214 ---------------------WTI-----LIDGLSKSGKLEAARDVFDRMPIRNSVSWNA 247

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           MI+ Y   G    A +LF +M E     +++TWN++  G  R   F   L+L   M  ++
Sbjct: 248 MINGYMKAGDSNTAKELFDQMPER----SLVTWNSMITGYERNKQFTKALKLFEVMLRED 303

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
              +    +  + A S + +L  G+ +H   V+  +     +   LI MYS+C  ++ A 
Sbjct: 304 ISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSAL 363

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F+   +K +  W S++ G       E++  LF EM R+G++P+ +T   +L  C+   
Sbjct: 364 RVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAG 423

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSL 484
             +    +   +         +  +  L+++  R+G + EAK   + M  + ++V +TSL
Sbjct: 424 FAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSL 483

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           ++G   +  G + +  +   +   + PD      +LS
Sbjct: 484 LSGS--RKHGNIRMGEYAAQHLIDLAPDTTGCYVILS 518


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 183/523 (34%), Positives = 270/523 (51%), Gaps = 88/523 (16%)

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           +FG +  AR+LFD + E    SWN M   Y+     K    L++EM E  V+ +  T+  
Sbjct: 60  EFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPF 119

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +         FKG             +  SVA             L+LG+E+H   V+  
Sbjct: 120 L---------FKG-------------FTRSVA-------------LQLGRELHCHVVK-- 142

Query: 341 YGEYENV--RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH---------- 388
           YG   NV   NALI MYS C  +  A  +F M+ +  ++TWN+M+SGY            
Sbjct: 143 YGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTA 202

Query: 389 --------------------------------------LDCAEESAFLFREMFRSGVEPN 410
                                                 L+C +E+  LFREM  S ++P+
Sbjct: 203 IVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPD 262

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             T+ S+L  CA++  L+ G+    YI +  + N+   + N+L++MY + G V  A S+F
Sbjct: 263 EFTMVSVLTACAQLGALELGEWIRTYIDKNKVKND-TFVGNALIDMYFKCGNVEMALSIF 321

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           + + +RD+ T+T+++ G  I G G  AL +F +M K  + PD VT V VLSAC+H+G+V 
Sbjct: 322 NTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVD 381

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           EG+K F  MT+ +GI P + H+ CMVDL G+AG L +A EII  MP  P S +W  LLGA
Sbjct: 382 EGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGA 441

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           C+IH++  + E A E++LE  P N   YVL  N+YAA   WDKL ++R  M D G++K P
Sbjct: 442 CRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTP 501

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           GC+ ++   +   F+  D S+ Q +EIY  L  +T  +K AGY
Sbjct: 502 GCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGY 544



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 205/444 (46%), Gaps = 37/444 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE-NSNIRYP--LPWN 144
           K++   KQ+H+  I  G+  NP++  K+++F  S   + + C+  +    I  P    WN
Sbjct: 25  KSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSRE-FGDMCYARQLFDTIPEPSVFSWN 83

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC 204
           ++   Y R       + +Y +M  R ++ D +TYP + K     + +  GR +H     C
Sbjct: 84  IMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELH-----C 138

Query: 205 H------EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY-------- 250
           H      + ++F HNAL++MY   G +D+AR +FD   + D V+WN MIS Y        
Sbjct: 139 HVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVI 198

Query: 251 ---------ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
                     + G    A + F +M E     + ++W  +  G LR   +K  L L   M
Sbjct: 199 SWTAIVTGFVNTGQVDAARKYFHKMPER----DHVSWTAMIDGYLRLNCYKEALMLFREM 254

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
           +T +   D    V  L AC+ +GAL+LG+ I     +        V NALI MY +C ++
Sbjct: 255 QTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNV 314

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
             A  +F    ++   TW +M+ G     C EE+  +F +M ++ V P+ VT   +L  C
Sbjct: 315 EMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSAC 374

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVT 480
                +  GK+F   +  R     ++  +  +V++  ++G + EA  +   M  + + + 
Sbjct: 375 THTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIV 434

Query: 481 YTSLIAGYGIQGEGRVALKLFEEM 504
           + +L+    I  +  +A +  E++
Sbjct: 435 WGALLGACRIHKDAEMAERAIEQI 458


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  312 bits (799), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 180/599 (30%), Positives = 313/599 (52%), Gaps = 37/599 (6%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+Q H   I  G ++N V+   L+  Y    L+ +A  + ++   +    +N +I  Y R
Sbjct: 60  GQQFHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYAR 119

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVH 212
            G   +A+ V+  M +  ++ +++T+ +++ AC    D D G           E   F+ 
Sbjct: 120 AGNGEKAIRVFINMLNAGLQPNDYTFTNIISAC----DGDLG---------IEEGEQFL- 165

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
             L   YG   +  +                N +I+ Y  KG+ +EA ++F  M +    
Sbjct: 166 -GLSFKYGFLNETSIG---------------NAIINMYGKKGMAREAERMFSAMTDR--- 206

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            N+I+W  +  G  R+G+ K  ++    +       DS      L  CS    L+LG +I
Sbjct: 207 -NLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRNLELGLQI 265

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY--THLD 390
           HG  ++  Y    N+  AL+ +Y++C +L  A ++F   + K I ++N++L+G+     D
Sbjct: 266 HGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAGFMENSRD 325

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             E+   LF      G++P+ VT + +L L A  + L  G+ +H Y ++   F   L + 
Sbjct: 326 GEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTG-FEADLSVA 384

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+++ MYA+ G + EA  +F++M+  D +++ ++I+ Y + G+G   L LFEEM K +  
Sbjct: 385 NAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEEMIKKEFA 444

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           PD +T++++L AC++SGL  +G   F  M   YGI P LEH+ACMVDL GRAG L++A +
Sbjct: 445 PDEITILSILQACTYSGLFRDGISLFNVMEPKYGIKPLLEHYACMVDLLGRAGHLSEAMD 504

Query: 571 IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
           II K P++ ++ +W TL+  C++  +   G+ A++ LLE  P  +G Y+L++NMYA    
Sbjct: 505 IINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKYLLELSPVEAGSYILVSNMYAGERM 564

Query: 631 WDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            D+ AKVRT M DL + K  G +W++  +    F+     + ++ EIY  L  L + M+
Sbjct: 565 LDEAAKVRTVMNDLKLSKEAGTSWIEIDDKVHHFVASGKDHPESNEIYAELDLLRDDMR 623



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 202/462 (43%), Gaps = 43/462 (9%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           +R  + W  LI  Y+ D  +  AL +  +M       +  T   +L+AC       FG+ 
Sbjct: 3   VRNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQ 62

Query: 197 VHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            H  +  C  + ++ V  +L++MY +      A ++FD M  +D   +N MI  YA  G 
Sbjct: 63  FHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGN 122

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
            ++A ++F+ M   G++ N  T+  I                                  
Sbjct: 123 GEKAIRVFINMLNAGLQPNDYTFTNI---------------------------------- 148

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            + AC     ++ G++  G + +  +    ++ NA+I MY +    R A  +F    +++
Sbjct: 149 -ISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMAREAERMFSAMTDRN 207

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +I+W +++SGYT     +++   F E+   GV  +   + +IL  C+   NL+ G + H 
Sbjct: 208 LISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRNLELGLQIHG 267

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY---GIQG 492
            +++   +   + +  +LV++YA+ G +  A+ VFD +S +   ++ +++AG+      G
Sbjct: 268 LVIKLG-YACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAGFMENSRDG 326

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
           E    + LF     + IKPD VT   +LS  ++   +  G + +       G    L   
Sbjct: 327 E-EDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRG-RCYHAYAIKTGFEADLSVA 384

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
             ++ +Y + G + +A  +   M     S  W  ++ A  +H
Sbjct: 385 NAVITMYAKCGSIEEAHRMFNVMN-DHDSISWNAMISAYALH 425



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 151/330 (45%), Gaps = 16/330 (4%)

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           N ITW ++  G L    F+  L + S M      L+     + L ACS       G++ H
Sbjct: 5   NTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQFH 64

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              ++  + E   V  +LI MY+R K    A  +F   A K +  +N M+  Y      E
Sbjct: 65  CFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGE 124

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           ++  +F  M  +G++PN  T  +I+  C     ++ G++F     +    NE   + N++
Sbjct: 125 KAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNE-TSIGNAI 183

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MY + G   EA+ +F  M+ R+ +++T+LI+GY   G+G+ A+  F E++   +  D 
Sbjct: 184 INMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDS 243

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC-------MVDLYGRAGLLN 566
             +  +L  CS         +  E    I+G+  +L  +AC       +VDLY + G L 
Sbjct: 244 SLLTTILDGCSEC-------RNLELGLQIHGLVIKL-GYACAVNIGTALVDLYAKCGNLM 295

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRN 596
            A+ +   +     ++  A L G  +  R+
Sbjct: 296 SARMVFDGLSSKRIASFNAILAGFMENSRD 325



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 177/427 (41%), Gaps = 36/427 (8%)

Query: 46  DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           ++A  GN  KA   F  I +  A       +F +II  C     + +G+Q    +   G 
Sbjct: 116 EYARAGNGEKAIRVF--INMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGF 173

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
                +   ++  Y    +   A  +      R  + W  LIS Y R G   +A+  + +
Sbjct: 174 LNETSIGNAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFME 233

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           +    +  D+    ++L  C E  +++ G  +H   I   +  ++ +  ALV +Y K G 
Sbjct: 234 LHLCGVNFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGN 293

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  AR +FD +  +   S+N +++              F+E   +G E  ++ +N     
Sbjct: 294 LMSARMVFDGLSSKRIASFNAILAG-------------FMENSRDGEEDPIVLFNH---- 336

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
             R    K  +   SR+ +    L +  + +G G C H  A+K G E   S         
Sbjct: 337 -FRLDGIKPDMVTFSRLLS----LSANHSTLGRGRCYHAYAIKTGFEADLS--------- 382

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             V NA+ITMY++C  +  A+ +F +  +   I+WN+M+S Y       +   LF EM +
Sbjct: 383 --VANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEEMIK 440

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
               P+ +TI SIL  C      + G      +  +      L  +  +V++  R+G + 
Sbjct: 441 KEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGIKPLLEHYACMVDLLGRAGHLS 500

Query: 465 EAKSVFD 471
           EA  + +
Sbjct: 501 EAMDIIN 507



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 121/236 (51%), Gaps = 6/236 (2%)

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           ++ ITW S++ GY   +  E +  +  EM +SG   N  T + IL  C+       G++F
Sbjct: 4   RNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQF 63

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           HC++++   F+E++++  SL+ MY RS    +A+ VFD M+ +D   +  +I  Y   G 
Sbjct: 64  HCFVIKCG-FDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGN 122

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  A+++F  M    ++P+  T   ++SAC    L +E  +QF  ++  YG   +     
Sbjct: 123 GEKAIRVFINMLNAGLQPNDYTFTNIISACD-GDLGIEEGEQFLGLSFKYGFLNETSIGN 181

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
            ++++YG+ G+  +A+ + + M      + W  L+     +  +G G+ A +  +E
Sbjct: 182 AIINMYGKKGMAREAERMFSAMTDRNLIS-WTALISG---YTRSGDGKKAVDTFME 233


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  312 bits (799), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 197/609 (32%), Positives = 313/609 (51%), Gaps = 35/609 (5%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---------SFSLYNNACFLVENSNIRY 139
            + Q KQ+ A     G+  +   V +++ F A         + +++N     VE  N   
Sbjct: 169 TMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNR----VEQPNT-- 222

Query: 140 PLPWNLLISLY--VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
              WN +I  Y   R   +A +  VY  M   R+  D+ ++   LKAC +   V  G  V
Sbjct: 223 -FMWNTMIRGYQNARKPIFAFSFFVY--MFQLRVEMDSRSFVFALKACQQFETVFEGESV 279

Query: 198 HSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           +  +     +  L V N L+  Y + G +  AR++FD+  ++D V+W TMI  YA+    
Sbjct: 280 YCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCS 339

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF---KGVLELLSR--MRTQETYLDSV 311
           +EA ++F  M    VE N +T   +   C   GN    K V E +    MR   +  +++
Sbjct: 340 EEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNAL 399

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
             +     C  V A +L   +   A +  Y        +++  Y++C DL  A   F  T
Sbjct: 400 LDMYVKCDCL-VDARELFDRM---ATKDVYS-----WTSMVNGYAKCGDLESARRFFDQT 450

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             K+ + W++M++GY+  +  +ES  LF EM   GV P   T+ S+L  C ++  L  G 
Sbjct: 451 PRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGD 510

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
             H Y +   +    + L N++V+MYA+ G +  A  VF  M  R+ +++ ++IAGY   
Sbjct: 511 WIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAAN 570

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G  + A+ +F++M     +P+++T V++L+ACSH GL+ EG++ F+ M   YGI P+  H
Sbjct: 571 GRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGH 630

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +ACMVDL GR GLL +A ++I  MP  P  A W  LL AC++H N  +   +A  LL   
Sbjct: 631 YACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLD 690

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           PE+SG YVL+AN  A    W  + +VR+ M+D GV+KIPG + ++    F  FLV D S+
Sbjct: 691 PEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESH 750

Query: 672 VQAQEIYPL 680
            Q++EIY L
Sbjct: 751 PQSEEIYKL 759



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 203/425 (47%), Gaps = 7/425 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF   +  C + + + +G+ ++     +G +   ++   L+ FYA   L  NA  + + S
Sbjct: 259 SFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDES 318

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + W  +I  Y       EA+ V++ M    +  +  T  +V+ AC +M +++ G+
Sbjct: 319 SDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGK 378

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH  ++  +   SL +HNAL+ MY K   +  AR LFD+M  +D  SW +M++ YA  G
Sbjct: 379 RVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCG 438

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             + A + F    ++    N + W+ +  G  +    K  L+L   M  +         V
Sbjct: 439 DLESARRFF----DQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLV 494

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMTAE 373
             L AC  +  L LG  IH   V G        + NA++ MY++C  +  A  +F    E
Sbjct: 495 SVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPE 554

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +++I+WN+M++GY     A+++  +F +M   G EPN +T  S+L  C+    +  G+E+
Sbjct: 555 RNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREY 614

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYGIQG 492
              + R+         +  +V++  R+G + EA K + ++  +  E  + +L+    + G
Sbjct: 615 FDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHG 674

Query: 493 EGRVA 497
              +A
Sbjct: 675 NVELA 679


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  312 bits (799), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 191/605 (31%), Positives = 310/605 (51%), Gaps = 40/605 (6%)

Query: 93  GKQLHACAI-ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           G+ +HA  +  L     P L   L+  Y+      +A  ++  +  R  + W  L+S   
Sbjct: 25  GRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLA 84

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE-WSLF 210
           ++G ++ AL  + +M+   +  ++FT+P V KA   +     G+ +H+    C     +F
Sbjct: 85  QNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVF 144

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V  +   MY K    D AR+LFD++ ER+  +WN  IS   + G  KEA + F+E +  G
Sbjct: 145 VGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIG 204

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
            + N IT             F G L                       ACS    L LG 
Sbjct: 205 GQPNSIT-------------FCGFLN----------------------ACSDGLLLDLGM 229

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           ++HG   R  +    +V N LI  Y +CK +R + I+F     K+ ++W S+++ Y    
Sbjct: 230 QMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNH 289

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
             E+++ L+    +  VE +   I+S+L  CA +A L+ G+  H + ++ A    ++ + 
Sbjct: 290 EDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK-ACVERNIFVG 348

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI- 509
           ++LV+MY + G + +++  FD M  ++ VT  SLI GY  QG+  +AL LFE+M      
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCG 408

Query: 510 -KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
             P+++T V++LSACS +G V  G K F+ M S YGI P  EH++C+VD+ GRAG++ +A
Sbjct: 409 PAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQA 468

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
            E I KMP  PT ++W  L  AC++H    +G  AAE L +  P++SG +VL++N +AA 
Sbjct: 469 FEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAA 528

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
           G W +   VR  M+ +G++K  G +W+   N    F   D S+   +EI  +L  L   M
Sbjct: 529 GRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKM 588

Query: 689 KDAGY 693
           + AGY
Sbjct: 589 EAAGY 593



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   +A EAF   R      + +  +F   +  C     L  G Q+H      G + +  
Sbjct: 188 GRPKEAIEAFIEFRRIGGQPNSI--TFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVS 245

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   L+ FY       ++  +     ++  + W  L++ YV++    +A  +Y + +   
Sbjct: 246 VYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEI 305

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +   +F   SVL AC  M  ++ GR +H+  + AC E ++FV +ALV MYGK G ++ + 
Sbjct: 306 VETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSE 365

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV--EVNVITWNTIAGGCLR 287
           + FD+M E++ V+ N++I  YA +G    A  LF +M   G     N +T+ ++   C R
Sbjct: 366 QAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSR 425

Query: 288 TGNFKGVLELLSRMRT 303
            G  +  +++   M++
Sbjct: 426 AGAVENGMKIFDSMKS 441



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
            ++++ G+  H  I++         L N L+ MY++      A+ V  L   R+ V++TS
Sbjct: 19  TSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTS 78

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           L++G    G    AL  F EM +  + P+  T   V  A +   L V G KQ   +    
Sbjct: 79  LVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTG-KQIHALAVKC 137

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           G    +       D+Y +  L + A+++  ++P
Sbjct: 138 GRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 170


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  312 bits (799), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 212/669 (31%), Positives = 327/669 (48%), Gaps = 43/669 (6%)

Query: 28  QPINNEHIMRINLLETLKDFAGRGNLSKAF--EAFTRIRITAASHDVVLDSFAHIIFCCG 85
           + I N+ ++  N L  +  ++ +G +  +F  E F R+R      +    +F+ +     
Sbjct: 69  ESITNKDVVSWNCL--INGYSQKGTVGYSFVMELFQRMRAENTLPNG--HTFSGVFTAAS 124

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
                  G Q HA AI      +  +   L+  Y       +A  + +    R  + W  
Sbjct: 125 SSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWAT 184

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
           +IS Y  +    EA  ++  M+      D F Y SVL A      V +G+ +H       
Sbjct: 185 IISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNG 244

Query: 206 EWSLF-VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
             S+  V NALV+MYGK G +D A + F+   ++D ++W+ MI+ YA  G   EA  LF 
Sbjct: 245 LLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFY 304

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
            M   G + +  T             F GV+                       ACS +G
Sbjct: 305 NMHLNGNKPSEFT-------------FVGVIN----------------------ACSDIG 329

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           AL+ GK+IHG +++  Y        AL+ MY++C  L  A   F    E  I+ W SM+S
Sbjct: 330 ALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMIS 389

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           GY      E +  L+  M    + P+ +T+AS+L  C+ +A L+ GK+ H   ++   F+
Sbjct: 390 GYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYG-FS 448

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             + + ++L  MYA+ G + +   VF  M  RD +T+ ++I+G    GEG  AL+LFEE+
Sbjct: 449 LEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEEL 508

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
                KPD+VT V VLSACSH GLV  G+  F  M   +GI P++EH+ACMVD+  RAG 
Sbjct: 509 RHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGK 568

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L++ KE I          +W  LLGAC+ +RN  +G +A EKL+E   + S  Y+L++++
Sbjct: 569 LHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSI 628

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           Y A G  D + +VR  M+  GV K PGC+W++  +    F+V D  + Q  +I   L  L
Sbjct: 629 YTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKICSELRRL 688

Query: 685 TELMKDAGY 693
            + MKD  Y
Sbjct: 689 RDHMKDECY 697



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 263/561 (46%), Gaps = 55/561 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF  ++  C + K L +GK +HA  +  G   +  L   LV  YA       A  + E+ 
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 136 NIRYPLPWNLLISLYVRDGF--YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
             +  + WN LI+ Y + G   Y+  + ++++M++     +  T+  V  A     +   
Sbjct: 72  TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFG 131

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G   H+  I   + + +FV ++L++MY K G +  AR++FD + ER+ VSW T+IS YA 
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191

Query: 253 KGLWKEAFQLFVEM-QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
           + +  EA++LF  M +EEG     I              +  VL              S 
Sbjct: 192 ERMAFEAWELFXLMRREEGAHDKFI--------------YTSVL--------------SA 223

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
            TV  L        +  GK+IH  A++       +V NAL+TMY +C  L  A   F+++
Sbjct: 224 LTVPDL--------VHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELS 275

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            +K  ITW++M++GY     + E+  LF  M  +G +P+  T   ++  C+ +  L+ GK
Sbjct: 276 GDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGK 335

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H Y L +A +   +    +LV+MYA+ G + +A+  FD +   D V +TS+I+GY   
Sbjct: 336 QIHGYSL-KAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQN 394

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           GE   AL L+  M   +I P  +TM +VL ACS    + +G KQ    T  YG   ++  
Sbjct: 395 GENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQG-KQIHAQTIKYGFSLEVPI 453

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE-- 609
            + +  +Y + G L     +  +MP        A + G  Q     G G  A E   E  
Sbjct: 454 GSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQ----NGEGLKALELFEELR 509

Query: 610 ---TRPENSGYYVLIANMYAA 627
              T+P+    YV   N+ +A
Sbjct: 510 HGTTKPD----YVTFVNVLSA 526



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 11/192 (5%)

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P + +   +L  C R  +LQ GK  H  +LR   F+  + L NSLV +YA+ G + +AK 
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSS-VYLTNSLVNLYAKCGSIVKAKL 66

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGE--GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           VF+ ++ +D V++  LI GY  +G       ++LF+ M      P+  T   V +A S S
Sbjct: 67  VFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSS 126

Query: 527 GLVVEGQKQFE---RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
                G +      + ++ Y +F      + ++++Y + G +  A+++   +P   T + 
Sbjct: 127 PETFGGLQAHALAIKTSNFYDVFVG----SSLINMYCKIGCMLDARKVFDTIPERNTVS- 181

Query: 584 WATLLGACQIHR 595
           WAT++    + R
Sbjct: 182 WATIISGYAMER 193


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  312 bits (799), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 190/620 (30%), Positives = 312/620 (50%), Gaps = 37/620 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  II  C     +  G+QLH   I  G + + +    L++ Y  F    +A  +    
Sbjct: 260 TFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMI 319

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFG 194
           + +  + W  +I+ + + G+  EAL +++ M  +     N F + SV  AC  +++ +FG
Sbjct: 320 STKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFG 379

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           R +H                   M  KFG            L R+  +  ++   YA  G
Sbjct: 380 RQIHG------------------MCAKFG------------LGRNVFAGCSLCDMYAKFG 409

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A + F +++      ++++WN I      +G+    +    +M       D +  +
Sbjct: 410 FLPSAIRAFYQIESP----DLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFL 465

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC     +  G +IH   ++    +   V N+L+TMY++C +L  A+ +FK  +E 
Sbjct: 466 SLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSEN 525

Query: 375 S-IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + +++WN++LS       A E   LF+ M  S  +P+ +TI +IL  CA +A+L+ G + 
Sbjct: 526 ANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQV 585

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           HC+ ++  +  + + + N L++MYA+ G +  A+ VF      D V+++SLI GY   G 
Sbjct: 586 HCFSVKSGLVVD-VSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGL 644

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  AL LF  M    ++P+ VT + VLSACSH GLV EG   +  M    GI P  EH +
Sbjct: 645 GHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVS 704

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           CMVDL  RAG L +A+  I KM + P   MW TLL +C+ H N  I E AAE +L+  P 
Sbjct: 705 CMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPS 764

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           NS   VL++N++A+ G W ++A++R  M+ +GV+K+PG +W+   +    F  +D S+ Q
Sbjct: 765 NSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQIHVFFSEDNSHQQ 824

Query: 674 AQEIYPLLGGLTELMKDAGY 693
             +IY +L  L   M D GY
Sbjct: 825 RGDIYTMLEDLWLQMLDDGY 844



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 217/462 (46%), Gaps = 42/462 (9%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYK-QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           L  N  I+L  +   Y EAL  +    ++  I+ ++ TY +++ AC  +  + +G+ +H 
Sbjct: 122 LSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHD 181

Query: 200 CI--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            I    C    L + N +++MYGK G +  AR+ FD M  R+ VSW  MIS Y+  G   
Sbjct: 182 HILKSNCQP-DLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQEN 240

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           +A  ++++M + G   + +T+ +I                                   +
Sbjct: 241 DAIIMYIQMLQSGYFPDPLTFGSI-----------------------------------I 265

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC   G + LG+++HG  ++  Y  +   +NALI+MY+R   + HA  +F M + K +I
Sbjct: 266 KACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLI 325

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCY 436
           +W SM++G+T L    E+ +LFR+MFR G  +PN     S+   C  +   + G++ H  
Sbjct: 326 SWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGM 385

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
             +  +   ++    SL +MYA+ G +P A   F  +   D V++ ++IA +   G+   
Sbjct: 386 CAKFGL-GRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNE 444

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A+  F +M    + PD +T +++L AC     + +G +    +  I G+  +      ++
Sbjct: 445 AIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKI-GLDKEAAVCNSLL 503

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
            +Y +   L+ A  +   +        W  +L AC  H+  G
Sbjct: 504 TMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAG 545



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/535 (22%), Positives = 238/535 (44%), Gaps = 41/535 (7%)

Query: 58  EAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           EA         +  + L+S  + ++I  C  +++L  GK++H   +    + + VL   +
Sbjct: 139 EALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHI 198

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           +  Y       +A    +   +R  + W ++IS Y ++G   +A+ +Y QM       D 
Sbjct: 199 LNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDP 258

Query: 176 FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            T+ S++KAC    D+D GR +H   I + ++  L   NAL+SMY +FGQ+  A  +F  
Sbjct: 259 LTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTM 318

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           +  +D +SW +MI+ +   G   EA  LF +M  +G                        
Sbjct: 319 ISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGF----------------------- 355

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
                  +  E    SV       AC  +   + G++IHG   +   G       +L  M
Sbjct: 356 ------YQPNEFIFGSV-----FSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDM 404

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y++   L  A   F       +++WN++++ ++      E+ + F +M  +G+ P+ +T 
Sbjct: 405 YAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITF 464

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLM 473
            S+L  C     +  G + H YI++  +  E  +  NSL+ MY +   + +A +VF D+ 
Sbjct: 465 LSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVC-NSLLTMYTKCSNLHDAFNVFKDVS 523

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
              + V++ ++++      +     +LF+ M  ++ KPD++T+  +L  C+    +  G 
Sbjct: 524 ENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVG- 582

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            Q    +   G+   +     ++D+Y + G L  A+++       P    W++L+
Sbjct: 583 NQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGST-QNPDIVSWSSLI 636


>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
           (PID:g473874) [Arabidopsis thaliana]
          Length = 597

 Score =  312 bits (799), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 188/618 (30%), Positives = 321/618 (51%), Gaps = 74/618 (11%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL- 141
           C    K+L + K +H   + LGL ++ VL   L+  Y +   + +A  + EN +IR  + 
Sbjct: 40  CTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVY 99

Query: 142 --------PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
                    WN +IS + + G   +AL ++ +M+S     ++ +    + AC  ++ ++ 
Sbjct: 100 IWNSLMSASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLER 159

Query: 194 GRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G+ +H  C+    E   +V++ALV MYGK   ++VAR +F KM  +              
Sbjct: 160 GKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRK-------------- 205

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                                +++ WN++  G +  G+ K  +E+L+RM  + T      
Sbjct: 206 ---------------------SLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTT 244

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               L ACS    L  GK IH +                            A  +F  T 
Sbjct: 245 LTSILMACSRSRNLLHGKFIHANL---------------------------AETVFSKTQ 277

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           +    +WN M+S Y  +    ++  ++ +M   GV+P+ VT  S+LP C+++A L+ GK+
Sbjct: 278 KDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQ 337

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  I    +  + LLL ++L++MY++ G   EA  +F+ + ++D V++T +I+ YG  G
Sbjct: 338 IHLSISESRLETDELLL-SALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHG 396

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
           + R AL  F+EM K  +KPD VT++AVLSAC H+GL+ EG K F +M S YGI P +EH+
Sbjct: 397 QPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHY 456

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIGEWAAEKLLETR 611
           +CM+D+ GRAG L +A EII + P T  +A + +TL  AC +H    +G+  A  L+E  
Sbjct: 457 SCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENY 516

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P+++  Y+++ N+YA+   WD   +VR  M+++G+RK PGC+W++  +    F  +D S+
Sbjct: 517 PDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSH 576

Query: 672 VQAQEIYPLLGGLTELMK 689
           ++A+ +Y  L  L+  M+
Sbjct: 577 LRAENVYECLALLSGHME 594



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 178/424 (41%), Gaps = 63/424 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F   G   KA E F R+  +    + V  S    I  C ++  L +GK++H   +  G E
Sbjct: 116 FYQSGEAEKALELFGRMESSGFEPNSV--SLTVAISACSRLLWLERGKEIHRKCVKKGFE 173

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LV  Y        A  + +    +  + WN +I  YV  G     + +  +M
Sbjct: 174 LDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRM 233

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
                R    T  S+L AC    ++                          ++GKF   +
Sbjct: 234 IIEGTRPSQTTLTSILMACSRSRNL--------------------------LHGKFIHAN 267

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
           +A  +F K  +  A SWN MIS+Y S G W +A +++ +M   GV+ +V+T+ ++     
Sbjct: 268 LAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSV----- 322

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                         L ACS + AL+ GK+IH S         E 
Sbjct: 323 ------------------------------LPACSQLAALEKGKQIHLSISESRLETDEL 352

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           + +AL+ MYS+C + + A+ +F    +K +++W  M+S Y       E+ + F EM + G
Sbjct: 353 LLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFG 412

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           ++P+ VT+ ++L  C     +  G +F   +  +      +  ++ ++++  R+G++ EA
Sbjct: 413 LKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEA 472

Query: 467 KSVF 470
             + 
Sbjct: 473 YEII 476



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 126/293 (43%), Gaps = 18/293 (6%)

Query: 1   MPPSSSRLILNG--LSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFE 58
           M  S SR +L+G  +  +  E    K  K    + ++M       +  +   GN  KA E
Sbjct: 250 MACSRSRNLLHGKFIHANLAETVFSKTQKDVAESWNVM-------ISSYISVGNWFKAVE 302

Query: 59  AFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTF 118
            + ++       DVV  +F  ++  C ++ AL +GKQ+H       LE + +L+  L+  
Sbjct: 303 VYDQMVSVGVKPDVV--TFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDM 360

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           Y+       A  +  +   +  + W ++IS Y   G   EAL  + +MQ   ++ D  T 
Sbjct: 361 YSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTL 420

Query: 179 PSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKML 236
            +VL ACG    +D G    S + + +     +  ++ ++ + G+ G++  A  +  +  
Sbjct: 421 LAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTP 480

Query: 237 ER--DAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           E   +A   +T+ SA   +    L     +L VE   +     ++ +N  A G
Sbjct: 481 ETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASG 533


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  312 bits (799), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 171/520 (32%), Positives = 286/520 (55%), Gaps = 39/520 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y ++L  C     +  G+ VH+  I  C+  S+++   L+ +Y K   +  AR +FD+M 
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           +++ VSW  MISAY+ +G   EA  LFVEM     E N  T+ TI   C  +  F+    
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFE---- 208

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                                           G++IH  A++  Y  +  V ++L+ MY+
Sbjct: 209 -------------------------------TGRQIHSIAIKRNYESHMFVGSSLLDMYA 237

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +   +  A+ +F    E+ ++   +++SGY  +   EE+  LFR++   G+  N VT AS
Sbjct: 238 KSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYAS 297

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L   + +A L HGK+ H ++LR   ++ +++L NSL++MY++ G V  A+ +FD M  R
Sbjct: 298 VLTALSGLAALNHGKQVHSHVLRSGQYS-YVVLLNSLIDMYSKCGNVCYARRIFDSMPER 356

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
             +++ +++ GY   G  R  L+LF+ M  +N++KPD +T +AVLS CSH  L   G + 
Sbjct: 357 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI 416

Query: 536 FERMTS-IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           F  M +   GI P + H+ C+VDL GRAG + +A + I KMP+ PT+A+W +LLG+C++H
Sbjct: 417 FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVH 476

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            +  IG    +KLLE  PEN+G YV+++N+YA+ G W+ +  +R  M++  V K PG +W
Sbjct: 477 SDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSW 536

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           V+   +   F   D ++ + +E+   +  L+   K+ GYV
Sbjct: 537 VELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYV 576



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 203/436 (46%), Gaps = 46/436 (10%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIA 102
            LK     G L +A      +++     +V  + +  I+  C   +A+ +G+++H   I 
Sbjct: 64  NLKTLCSSGQLKEAL-----LQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIK 118

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
                +  L  +L+  Y       +A  + +    +  + W  +IS Y + GF  EAL +
Sbjct: 119 TCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNL 178

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           + +M       ++FT+ ++L +C   +  + GR +HS  I   +E  +FV ++L+ MY K
Sbjct: 179 FVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAK 238

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G++  A  +F  + ERD V+   +IS YA  GL +EA +LF ++Q EG+  N +T+ ++
Sbjct: 239 SGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASV 298

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                              L A S + AL  GK++H   +R   
Sbjct: 299 -----------------------------------LTALSGLAALNHGKQVHSHVLRSGQ 323

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
             Y  + N+LI MYS+C ++ +A  +F    E++ I+WN+ML GY+    A E   LF+ 
Sbjct: 324 YSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKL 383

Query: 402 MFRSG-VEPNYVTIASILPLCARVANLQHGKE-FHCYILRRAMFNEHLLLWNSLVEMYAR 459
           M     V+P+ +T  ++L  C+       G E F+  +  +      +  +  +V++  R
Sbjct: 384 MREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGR 443

Query: 460 SGKVPEAKSVFDLMSR 475
           +G+V EA   FD + +
Sbjct: 444 AGRVEEA---FDFIKK 456


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 197/664 (29%), Positives = 326/664 (49%), Gaps = 47/664 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  CG +  +  G++ H  +I +GL+ N  +   L+  YA      +A     + 
Sbjct: 139 TLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDV 198

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLK-----ACGEMMD 190
                + +  ++          EA  +++ M   RI  D+ +  SVL       CGE   
Sbjct: 199 PEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGL 258

Query: 191 VDFGRVVHS--------CIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
            D   V+ S        C+   H  E  L ++N+L+ MY K G +D A  +F  M E   
Sbjct: 259 HDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSV 318

Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT----------------------- 277
           VSWN MI+ Y  K    +A +    MQ  G E + IT                       
Sbjct: 319 VSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDG 378

Query: 278 --------WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
                   WNTI  G  +  N K  ++L   M+ +  + D     I L + + +  L+ G
Sbjct: 379 MSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGG 438

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +++H  + +  +     + + LI MYS+C  +  A  +F   AE  I+ WNSM++G +  
Sbjct: 439 RQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLN 498

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              +E+   F++M   G+ P+  + A++L  CA++++L  G++ H  I R    N+   +
Sbjct: 499 SLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMND-AFV 557

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            ++L++MY++ G V  A+ VFD+M  ++ VT+  +I GY   G G  A+ L+E+M  +  
Sbjct: 558 GSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGE 617

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           KPD +T VAVL+ACSHSGLV  G K F  M   +G+ P ++H+ C++D  GRAG L++A+
Sbjct: 618 KPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAE 677

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
            +I KMP      +W  LL +C+++ +  +   AAE+L    P+NS  YVL+AN+Y++ G
Sbjct: 678 VLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLG 737

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            WD    VR  M    V K PG +W++  N    F+VDD   +   E+  +  G++   K
Sbjct: 738 RWDDAKAVRELMSYNQVVKDPGYSWIEHKNGMQAFMVDDNGRMVDDEVVVVNDGMSCFKK 797

Query: 690 DAGY 693
            A +
Sbjct: 798 VAPF 801



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 201/393 (51%), Gaps = 26/393 (6%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+ N L+  Y K   +D +RRLFD+M +RD  +WN ++ AY      ++A  LF EM E 
Sbjct: 41  FLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPER 100

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKL 328
               N+++WNT+     R G  +  L +  RM ++E ++ +  T+   L AC  +  ++ 
Sbjct: 101 ----NIVSWNTLISALTRNGFEQKALGVYYRM-SREGFVPTHFTLASVLSACGALVDVEC 155

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           G+  HG +++        V NAL+ MY++C+ +  A   F    E + +++ +M+ G   
Sbjct: 156 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLAD 215

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR--------------VANLQHGKEFH 434
            D   E+  LFR M R+ +  + V+++S+L +C+R              +++  HG++ H
Sbjct: 216 SDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVH 275

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
           C  ++   F   L L NSL++MYA++G +  A+ +F  M     V++  +IAGYG + + 
Sbjct: 276 CLTIKHG-FESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQS 334

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             A++  + M  +  +PD +T V +L AC  SG +  G++ F+ M+S     P L  +  
Sbjct: 335 SKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSS-----PSLSSWNT 389

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           ++  Y +     +A ++  +M +        TL
Sbjct: 390 ILSGYSQNENHKEAVKLFREMQFRSVHPDRTTL 422



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 146/576 (25%), Positives = 247/576 (42%), Gaps = 79/576 (13%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY-------ASFSLYN--- 126
            A ++  C   KA   GK +HA  +   L  +  L  +L+ FY       AS  L++   
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 127 ---------------------NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
                                +A  L      R  + WN LIS   R+GF  +AL VY +
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ 224
           M        +FT  SVL ACG ++DV+ GR  H   I    + +++V NAL+ MY K   
Sbjct: 128 MSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 187

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  A + F  + E + VS+  M+   A      EAF+LF  M    + V+ ++ +++ G 
Sbjct: 188 IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGV 247

Query: 285 CLRTG-----------------------------NFKGVLEL---LSRMRTQETYLDSVA 312
           C R G                              F+  L L   L  M  +   +DS  
Sbjct: 248 CSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAE 307

Query: 313 TV-IGLGACS----HVGALKLGKEIHGSAV-----RGCYGEYENVRNALITMYSRC---K 359
            + + +   S    +V     G++   S       R  Y  +E      + M   C    
Sbjct: 308 MIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSG 367

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
           D+     +F   +  S+ +WN++LSGY+  +  +E+  LFREM    V P+  T+A IL 
Sbjct: 368 DIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILS 427

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
             A +  L+ G++ H  + ++A+F   + L + L+ MY++ GKV  AK +FD ++  D V
Sbjct: 428 SLAGMMLLEGGRQVHA-VSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIV 486

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
            + S++AG  +    + A   F++M +  + P   +   VLS C+    + +G +Q    
Sbjct: 487 CWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQG-RQVHSQ 545

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            +  G        + ++D+Y + G ++ A+ +   M
Sbjct: 546 IAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMM 581



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 6/276 (2%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  ++   N  +A + F  ++  +   D    + A I+     +  L  G+Q+HA +   
Sbjct: 391 LSGYSQNENHKEAVKLFREMQFRSVHPDRT--TLAIILSSLAGMMLLEGGRQVHAVSQKA 448

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
               +  L   L+  Y+       A  + +       + WN +++    +    EA   +
Sbjct: 449 VFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFF 508

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
           K+M+ + +    F+Y +VL  C ++  +  GR VHS I    +    FV +AL+ MY K 
Sbjct: 509 KKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKC 568

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G VD AR +FD ML ++ V+WN MI  YA  G   EA  L+ +M   G + + IT+  + 
Sbjct: 569 GDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVL 628

Query: 283 GGCLRTGNFKGVLELLSRMRTQ---ETYLDSVATVI 315
             C  +G     +++ + M+ +   E  +D    +I
Sbjct: 629 TACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCII 664


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 295/560 (52%), Gaps = 50/560 (8%)

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
           PWN+ +        ++E++ +Y+ M       D F++P +LK+C  +     G+ +H   
Sbjct: 20  PWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLH--- 76

Query: 202 DACH------EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD--AVSWNTMISAYASK 253
             CH      E   FV  AL+SMY K G V  AR++F++  +    +V +N +IS Y + 
Sbjct: 77  --CHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTAN 134

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
               +A  +F  M+E GV V+ +T               G++ L                
Sbjct: 135 SKVTDAAYMFRRMKETGVSVDSVT-------------MLGLVPL---------------- 165

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                 C+    L LG+ +HG  V+G       V N+ ITMY +C  +     LF     
Sbjct: 166 ------CTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPV 219

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K +ITWN+++SGY+    A +   L+ +M  SGV P+  T+ S+L  CA +   + G E 
Sbjct: 220 KGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEV 279

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
              ++    F  ++ + N+ + MYAR G + +A++VFD+M  +  V++T++I  YG+ G 
Sbjct: 280 G-KLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGM 338

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G + L LF++M K  I+PD    V VLSACSHSGL  +G + F  M   Y + P  EH++
Sbjct: 339 GEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYS 398

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           C+VDL GRAG L++A E I  MP  P  A+W  LLGAC+IH+N  + E A  K++E  P 
Sbjct: 399 CLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPN 458

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           N GYYVL++N+Y+ +   + + ++R  MR+   RK PG ++V+       FL  D S+ Q
Sbjct: 459 NIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQ 518

Query: 674 AQEIYPLLGGL-TELMKDAG 692
            +E++ +L  L T +M+ AG
Sbjct: 519 TEEVHRMLDELETSVMELAG 538



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 195/438 (44%), Gaps = 50/438 (11%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L++ A +   S++   +  +  + +S D    SF  I+  C  +     G+QLH      
Sbjct: 25  LRELAYQSLFSESISLYRSMLRSGSSPDAF--SFPFILKSCASLSLPVSGQQLHCHVTKG 82

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENS--NIRYPLPWNLLISLYVRDGFYAEALC 161
           G E  P ++  L++ Y    L  +A  + E +  + +  + +N LIS Y  +    +A  
Sbjct: 83  GCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAY 142

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYG 220
           ++++M+   +  D+ T   ++  C     +  GR +H  C+    +  + V N+ ++MY 
Sbjct: 143 MFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYM 202

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G V+  RRLFD+M  +  ++WN +IS Y+  GL  +  +L+ +M+  GV  +  T  +
Sbjct: 203 KCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVS 262

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +                                   L +C+H+GA K+G E+        
Sbjct: 263 V-----------------------------------LSSCAHLGAKKIGHEVGKLVESNG 287

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +     V NA I+MY+RC +L  A  +F +   KS+++W +M+  Y      E    LF 
Sbjct: 288 FVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFD 347

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL-----LWNSLVE 455
           +M + G+ P+      +L  C+       G E     L RAM  E+ L      ++ LV+
Sbjct: 348 DMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE-----LFRAMKREYKLEPGPEHYSCLVD 402

Query: 456 MYARSGKVPEAKSVFDLM 473
           +  R+G++ EA    + M
Sbjct: 403 LLGRAGRLDEAMEFIESM 420


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 301/534 (56%), Gaps = 14/534 (2%)

Query: 175 NFTYPS-VLKACGEMMDVDFGRVVHSCIDACHEWS-----LFVHNALVSMYGKFGQVDVA 228
           N   PS +L  CG   ++  G  +H+ I    E S     + + N+L+SMY + G++  A
Sbjct: 44  NHLDPSFLLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDA 103

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAF--QLFVEMQEEGVEVNVITWNTIAGGCL 286
            ++FD+M+ RD +SWN +I  +   G +      Q+F EM E     NVITW  +  G  
Sbjct: 104 VKVFDEMVTRDTISWNALIGGFVRNGKFFAGLGMQVFYEMGER----NVITWTAVISGLA 159

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSHVGALKLGKEIHGSAVRGCYGEYE 345
           + G  +  L+L   M +  +   +  T + L  ACS + ALK G +IHG  ++       
Sbjct: 160 QNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDL 219

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            + +AL+ MYS+   +  A+ +F++  E  +++   +L+G+TH  C EE+  +F +M + 
Sbjct: 220 CIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKM 279

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G+E +   ++ +L +     +L+ G++ H ++++R  F  +  + N L+ MY++ G + E
Sbjct: 280 GIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKRN-FICNPFVSNGLINMYSKCGALDE 338

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           +  VFD M  R+ VT+ S+IA +   G+   AL+L+E+M     KP  VT +++L ACSH
Sbjct: 339 SMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSH 398

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           +GLV +G +  + MT  +G+ P+ EH AC+VD+ GRAG+L++A+  I K+P  P   +W 
Sbjct: 399 AGLVKKGMEFLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQ 458

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LLGAC ++ ++ IG++AAE L    P++   YVL+AN+Y++ G W + A+    M+++G
Sbjct: 459 ALLGACSLYGDSKIGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVG 518

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
             K  G +W++       F V D  + Q + IY +L  L  LM D GYV  ++F
Sbjct: 519 TAKETGISWIEIDKKVHSFTVGDKMHPQTEMIYGVLWELFILMVDEGYVPDKKF 572



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 204/474 (43%), Gaps = 79/474 (16%)

Query: 80  IIFCCGKVKALAQGKQLHACAIA---LGLEKNPVLV-PKLVTFYASFSLYNNACFLVENS 135
           ++  CG+   L  G  LHA  I    L    N V++   L++ Y       +A  + +  
Sbjct: 51  LLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEM 110

Query: 136 NIRYPLPWNLLISLYVR---------------------------------DGFYAEALCV 162
             R  + WN LI  +VR                                 +G++  +L +
Sbjct: 111 VTRDTISWNALIGGFVRNGKFFAGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKL 170

Query: 163 YKQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYG 220
           +K+M S   +  ++ TY S+L AC  +  +  G  +H  I     +  L + +AL+ MY 
Sbjct: 171 FKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYS 230

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G++  A ++F+   E D VS   +++ +   G  +EA Q+F++M + G+E++      
Sbjct: 231 KSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEID------ 284

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                   GN                    V +V+ LG      +L+LG+++H   V+  
Sbjct: 285 --------GN--------------------VVSVV-LGVFGADTSLRLGQQVHSFVVKRN 315

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +     V N LI MYS+C  L  +  +F    E++ +TWNSM++ +     A ++  L+ 
Sbjct: 316 FICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYE 375

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M   G +P  VT  S+L  C+    ++ G EF   + +    N        +V+M  R+
Sbjct: 376 DMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACVVDMLGRA 435

Query: 461 GKVPEAKSVFDLMSRRDE-VTYTSLIAGYGIQGEGRV----ALKLFEEMNKNQI 509
           G + EA++  + +  +   + + +L+    + G+ ++    A  LF E   + +
Sbjct: 436 GMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIGKYAAEHLFSETPDSPV 489



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 115/227 (50%), Gaps = 1/227 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  ++AL +G Q+H   + LG++ +  +   L+  Y+       A  + E +
Sbjct: 186 TYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELA 245

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                +   ++++ +  +G   EA+ ++ +M    I  D      VL   G    +  G+
Sbjct: 246 EELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQ 305

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VHS  +      + FV N L++MY K G +D + ++FD+M ER++V+WN+MI+A+A  G
Sbjct: 306 QVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHG 365

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
              +A QL+ +MQ EG +   +T+ ++   C   G  K  +E L  M
Sbjct: 366 DALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSM 412



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 114/303 (37%), Gaps = 50/303 (16%)

Query: 22  IPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTR-----IRITAASHDVVLDS 76
           I + WK     E +  ++L   L  F   G   +A + F +     I I      VVL  
Sbjct: 235 IGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGV 294

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F       G   +L  G+Q+H+  +      NP +   L+  Y+     + +  + +   
Sbjct: 295 F-------GADTSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMR 347

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + WN +I+ + R G   +AL +Y+ MQ    +  + T+ S+L AC     V  G  
Sbjct: 348 ERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGME 407

Query: 197 VHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKMLERDA-VSWNTMISA---- 249
               +   H  +     H  +V M G+ G +  AR   +K+ E+   + W  ++ A    
Sbjct: 408 FLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLY 467

Query: 250 ------------------------------YASKGLWKEAFQLFVEMQEEGVEVNV-ITW 278
                                         Y+S+G WKE  +   +M+E G      I+W
Sbjct: 468 GDSKIGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISW 527

Query: 279 NTI 281
             I
Sbjct: 528 IEI 530


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 188/617 (30%), Positives = 309/617 (50%), Gaps = 48/617 (7%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP- 142
           C  ++ L  GK +H   +   ++ +  +   L+  Y+     N+A  +       YP P 
Sbjct: 115 CSGLQKLELGKMIHGF-LKKKIDSDMFVGSALIELYSKCGQMNDAVKVF----TEYPKPD 169

Query: 143 ---WNLLISLYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
              W  +I+ Y ++G    AL  + +M    ++  D  T  S   AC ++ D + GR VH
Sbjct: 170 VVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVH 229

Query: 199 SCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
             +     +  L + N+++++YGK G + +A  LF +M  +D +SW++M++ YA      
Sbjct: 230 GFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYA------ 283

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                     + G E N                    L L + M  +   L+ V  +  L
Sbjct: 284 ----------DNGAETNA-------------------LNLFNEMIDKRIELNRVTVISAL 314

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+    L+ GK+IH  AV   +     V  AL+ MY +C    +A  LF    +K ++
Sbjct: 315 RACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVV 374

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +W  + SGY  +  A +S  +F  M  +G  P+ + +  IL   + +  +Q     H ++
Sbjct: 375 SWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFV 434

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
            +   F+ +  +  SL+E+YA+   +  A  VF  +   D VT++S+IA YG  G+G  A
Sbjct: 435 TKSG-FDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEA 493

Query: 498 LKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           LKL  +M N + +KP+ VT V++LSACSH+GL+ EG K F  M + Y + P +EH+  MV
Sbjct: 494 LKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMV 553

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GR G L+KA ++I  MP      +W  LLGAC+IH+N  IGE AA  L    P ++G
Sbjct: 554 DLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAG 613

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
           YY L++N+Y     W   AK+RT +++  ++KI G + V+  N    F+  D  + ++ +
Sbjct: 614 YYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIKNEVHSFIASDRFHGESDQ 673

Query: 677 IYPLLGGLTELMKDAGY 693
           IY +L  L   M++ GY
Sbjct: 674 IYEMLRKLDARMREEGY 690



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/525 (26%), Positives = 241/525 (45%), Gaps = 49/525 (9%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           CC K+       QLH+  + +GL  +  +V KL   YA ++   +A  L E +  +    
Sbjct: 14  CCSKISI----TQLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYL 69

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRI---RGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           WN L+  Y  +G + E L ++ QM +  +   R DN+T    LK+C  +  ++ G+++H 
Sbjct: 70  WNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHG 129

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    +  +FV +AL+ +Y K GQ++ A ++F +  + D V W ++I+ Y   G  + A
Sbjct: 130 FLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELA 189

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
              F  M                           VLE +S         D V  V    A
Sbjct: 190 LAFFSRMV--------------------------VLEQVSP--------DPVTLVSAASA 215

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +    LG+ +HG   R  +     + N+++ +Y +   +R A  LF+    K II+W
Sbjct: 216 CAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISW 275

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           +SM++ Y        +  LF EM    +E N VT+ S L  CA  +NL+ GK+ H   + 
Sbjct: 276 SSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVN 335

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
              F   + +  +L++MY +      A  +F+ M ++D V++  L +GY   G    +L 
Sbjct: 336 YG-FELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLG 394

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-ACMVDL 558
           +F  M  N  +PD + +V +L+A S  G+V +       +T     F   E   A +++L
Sbjct: 395 VFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTK--SGFDNNEFIGASLIEL 452

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           Y +   ++ A ++   + +T     W++++ A   H   G GE A
Sbjct: 453 YAKCSSIDNANKVFKGLRHTDV-VTWSSIIAAYGFH---GQGEEA 493



 Score = 43.9 bits (102), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 12/210 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   K+   F  +       D +  +   I+    ++  + Q   LHA     G +
Sbjct: 383 YAEIGMAHKSLGVFCNMLSNGTRPDAI--ALVKILAASSELGIVQQALCLHAFVTKSGFD 440

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N  +   L+  YA  S  +NA  + +       + W+ +I+ Y   G   EAL +  QM
Sbjct: 441 NNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQM 500

Query: 167 QSRR-IRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFV----HNALVSMYG 220
            +   ++ ++ T+ S+L AC     ++ G ++ H  ++   E+ L      +  +V + G
Sbjct: 501 SNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVN---EYQLMPNIEHYGIMVDLLG 557

Query: 221 KFGQVDVARRLFDKM-LERDAVSWNTMISA 249
           + G++D A  + + M ++     W  ++ A
Sbjct: 558 RMGELDKALDMINNMPMQAGPHVWGALLGA 587


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 170/520 (32%), Positives = 286/520 (55%), Gaps = 39/520 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y ++L AC +   +  G+ VH+  I   +  + ++   L+  YGK   ++ AR++ D+M 
Sbjct: 54  YDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 113

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           E++ VSW  MIS Y+  G   EA  +F EM     + N  T+ T+   C+R         
Sbjct: 114 EKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRAS------- 166

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                                        L LGK+IHG  V+  Y  +  V ++L+ MY+
Sbjct: 167 ----------------------------GLALGKQIHGLIVKWNYDSHIFVGSSLLDMYA 198

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +   +  A  +F+   E+ +++  ++++GY  L   EE+  +F+ +   G+ PNYVT AS
Sbjct: 199 KAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYAS 258

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L   + +A L HGK+ HC++LRR +   + +L NSL++MY++ G +  A+ +FD M  R
Sbjct: 259 LLTALSGLALLDHGKQAHCHVLRREL-PFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPER 317

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
             +++ +++ GY   G GR  L+LF  M ++ ++KPD VT++AVLS CSH  +   G   
Sbjct: 318 TAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSI 377

Query: 536 FERMTS-IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           ++ M +  YGI P  EH+ C+VD+ GRAG +++A E I +MP  PT+ +  +LLGAC++H
Sbjct: 378 YDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVH 437

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            +  IGE+   +L+E  PEN+G YV+++N+YA+ G W+ +  VR  M    V K PG +W
Sbjct: 438 LSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSW 497

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +        F  +D ++ + +E+   +  ++  MK AGYV
Sbjct: 498 IQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 537



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 23/354 (6%)

Query: 290 NFKGVLELLSRMRTQETYLDSV--ATVIG-------LGACSHVGALKLGKEIHGSAVRGC 340
            F+ + +L S  R QE  L+ V     IG       L AC    AL+ G+ +H   ++  
Sbjct: 22  TFRPISQLCSNGRLQEALLEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTR 81

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           Y     +R  L+  Y +C  L  A  +     EK++++W +M+S Y+    + E+  +F 
Sbjct: 82  YLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFA 141

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           EM RS  +PN  T A++L  C R + L  GK+ H  I++   ++ H+ + +SL++MYA++
Sbjct: 142 EMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWN-YDSHIFVGSSLLDMYAKA 200

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G++ EA+ +F+ +  RD V+ T++IAGY   G    AL++F+ +    ++P++VT  ++L
Sbjct: 201 GQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLL 260

Query: 521 SACSHSGLVVEGQKQ----FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           +A S   L+  G++       R    Y +         ++D+Y + G L+ A+ +   MP
Sbjct: 261 TALSGLALLDHGKQAHCHVLRRELPFYAVLQN-----SLIDMYSKCGNLSYAQRLFDNMP 315

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630
              T+  W  +L     H   G+G    E     R E       +  +   +GC
Sbjct: 316 -ERTAISWNAMLVGYSKH---GLGREVLELFRLMRDEKRVKPDAVTLLAVLSGC 365



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 192/408 (47%), Gaps = 59/408 (14%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C   +AL +G+++HA  I         L  +L+ FY       +A  +++    + 
Sbjct: 57  LLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 116

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  +IS Y + G  +EAL V+ +M     + + FT+ +VL +C     +  G+ +H 
Sbjct: 117 VVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHG 176

Query: 200 CIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I    ++  +FV ++L+ MY K GQ++ AR +F+ + ERD VS   +I+ YA  GL +E
Sbjct: 177 LIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 236

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A ++F  +Q EG+  N +T+ ++                                   L 
Sbjct: 237 ALEMFQRLQSEGMRPNYVTYASL-----------------------------------LT 261

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           A S +  L  GK+ H   +R     Y  ++N+LI MYS+C +L +A  LF    E++ I+
Sbjct: 262 ALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAIS 321

Query: 379 WNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGK-EFHCY 436
           WN+ML GY+      E   LFR M     V+P+ VT+ ++L  C+      HGK E    
Sbjct: 322 WNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS------HGKMEDTGL 375

Query: 437 ILRRAMF---------NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
            +   M           EH   +  +V+M  R+G++ EA   F+ + R
Sbjct: 376 SIYDGMVAGEYGIKPDTEH---YGCIVDMLGRAGRIDEA---FEFIKR 417



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 14/246 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++  G+ S+A   F  +  +    +    +FA ++  C +   LA GKQ+H   +    +
Sbjct: 127 YSQTGHSSEALSVFAEMMRSDGKPNEF--TFATVLTSCIRASGLALGKQIHGLIVKWNYD 184

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L+  YA       A  + E    R  +    +I+ Y + G   EAL +++++
Sbjct: 185 SHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRL 244

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH------EWSLFVHNALVSMYG 220
           QS  +R +  TY S+L A   +  +D G+  H     CH       +   + N+L+ MY 
Sbjct: 245 QSEGMRPNYVTYASLLTALSGLALLDHGKQAH-----CHVLRRELPFYAVLQNSLIDMYS 299

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG-VEVNVITWN 279
           K G +  A+RLFD M ER A+SWN M+  Y+  GL +E  +LF  M++E  V+ + +T  
Sbjct: 300 KCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLL 359

Query: 280 TIAGGC 285
            +  GC
Sbjct: 360 AVLSGC 365


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  311 bits (798), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 187/583 (32%), Positives = 303/583 (51%), Gaps = 50/583 (8%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL---- 141
           + K L   +Q+HA  I  G E   VL   L   Y    + +N      +S  R P     
Sbjct: 16  QAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAY----IQSNRLDFATSSFNRIPCWKRN 71

Query: 142 --PWNLLISLYVRDGF--YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
              WN ++S Y +     Y++ L +Y +M+      D+F     +KAC  +  ++ G ++
Sbjct: 72  RHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGILI 131

Query: 198 HS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H   +    +   +V  +LV MY + G ++ A+++FD++  R                  
Sbjct: 132 HGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVR------------------ 173

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
                            N + W  +  G L+      V  L   MR     LD++  +  
Sbjct: 174 -----------------NSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICL 216

Query: 317 LGACSHVGALKLGKEIHGSAVRGCY-GEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
           + AC +V A K+GK +HG ++R  +  + + ++ ++I MY +C+ L +A  LF+ + +++
Sbjct: 217 VKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRN 276

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ++ W +++SG+   + A E+  LFR+M R  + PN  T+A+IL  C+ + +L+HGK  H 
Sbjct: 277 VVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHG 336

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y++R  +     + + S ++MYAR G +  A++VFD+M  R+ ++++S+I  +GI G   
Sbjct: 337 YMIRNGI-EMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL  F +M    + P+ VT V++LSACSHSG V EG KQFE MT  YG+ P+ EH+ACM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VDL GRAG + +AK  I  MP  P ++ W  LL AC+IH+   +    AEKLL   PE S
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKS 515

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
             YVL++N+YA  G W+ +  VR  M   G RK  G +  + G
Sbjct: 516 SVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQSATEVG 558



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 215/457 (47%), Gaps = 50/457 (10%)

Query: 74  LDSFAHI--IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           +DSF  +  I  C  +  L  G  +H  A+  GL+K+  + P LV  YA      +A  +
Sbjct: 107 VDSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKV 166

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            +   +R  + W +L+  Y++     E   ++  M+   +  D  T   ++KACG +   
Sbjct: 167 FDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAG 226

Query: 192 DFGRVVH--SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
             G+ VH  S   +  + S ++  +++ MY K   +D AR+LF+  ++R+ V W T+IS 
Sbjct: 227 KVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISG 286

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           +A      EAF LF +M  E +  N  T   I                            
Sbjct: 287 FAKCERAVEAFDLFRQMLRESILPNQCTLAAI---------------------------- 318

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYILF 368
                  L +CS +G+L+ GK +HG  +R    E + V   + I MY+RC +++ A  +F
Sbjct: 319 -------LVSCSSLGSLRHGKSVHGYMIRNGI-EMDAVNFTSFIDMYARCGNIQMARTVF 370

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
            M  E+++I+W+SM++ +      EE+   F +M    V PN VT  S+L  C+   N++
Sbjct: 371 DMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVK 430

Query: 429 HG-KEFHCYILRRAMF--NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSL 484
            G K+F        +    EH   +  +V++  R+G++ EAKS  D M  +   + + +L
Sbjct: 431 EGWKQFESMTRDYGVVPEEEH---YACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           ++   I  E  +A ++ E++    ++P+  ++  +LS
Sbjct: 488 LSACRIHKEVDLAGEIAEKL--LSMEPEKSSVYVLLS 522



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 4/240 (1%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLVP 113
           + F  F  +R T  + D +  +   ++  CG V A   GK +H  +I    ++++  L  
Sbjct: 193 EVFRLFCLMRDTGLALDAL--TLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQA 250

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            ++  Y    L +NA  L E S  R  + W  LIS + +     EA  +++QM    I  
Sbjct: 251 SIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILP 310

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           +  T  ++L +C  +  +  G+ VH   I    E       + + MY + G + +AR +F
Sbjct: 311 NQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVF 370

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D M ER+ +SW++MI+A+   GL++EA   F +M+ + V  N +T+ ++   C  +GN K
Sbjct: 371 DMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVK 430


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  311 bits (798), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 188/627 (29%), Positives = 315/627 (50%), Gaps = 43/627 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++       AL  G+++HA ++  G   +  +   L+  YA   L  +A  +    
Sbjct: 203 TFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM 262

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN L++    +    EAL ++ + ++   +    TY +V+K C  +  +   R
Sbjct: 263 ETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALAR 322

Query: 196 VVHSCIDACHEWSLF--VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            +HSC+   H + L   V  AL   Y K G++             DA++  +M +     
Sbjct: 323 QLHSCVLK-HGFHLTGNVMTALADAYSKCGEL------------ADALNIFSMTTG---- 365

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                               NV++W  I  GC++ G+    + L SRMR      +    
Sbjct: 366 ------------------SRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTY 407

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L A   +    L  +IH   ++  Y     V  AL+  YS+      A  +FKM  +
Sbjct: 408 SAMLKASLSI----LPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQ 463

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA-RVANLQHGKE 432
           K ++ W++MLS +      E + +LF +M   G++PN  TI+S++  CA   A +  G++
Sbjct: 464 KDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ 523

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
           FH  I  +  +++ + + ++LV MY+R G +  A+ VF+  + RD V++ S+I+GY   G
Sbjct: 524 FHA-ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHG 582

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               A++ F +M  + I+ D VT +AV+  C+H+GLVVEGQ+ F+ M   + I P +EH+
Sbjct: 583 YSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHY 642

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           ACMVDLY RAG L++   +I  MP+   + +W TLLGAC++H+N  +G+++A+KLL   P
Sbjct: 643 ACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEP 702

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            +S  YVL++N+YAA G W +  +VR  M    V+K  GC+W+   N    F+  D S+ 
Sbjct: 703 HDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHP 762

Query: 673 QAQEIYPLLGGLTELMKDAGYVVKEEF 699
            + +IY  L  +   +K  GY     F
Sbjct: 763 MSDQIYKKLKVIITRLKQDGYSPNTSF 789



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 133/537 (24%), Positives = 245/537 (45%), Gaps = 51/537 (9%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAI 101
           L D+A RG + +  + F+     A    V++DS   + ++  C  V     G+QLH   +
Sbjct: 71  LFDYARRGMVLEVLDQFS----VARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCV 126

Query: 102 ALGLEKNPVLV-PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
             G ++  V     LV  Y           + E    +  + W  L++       ++E +
Sbjct: 127 KCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVM 186

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVHNALVSM 218
            ++ +M++  I  + FT+ SVL A      +D G+ VH  S    C   S+FV N+L++M
Sbjct: 187 ALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRS-SVFVCNSLMNM 245

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G V+ A+ +F+ M  RD VSWNT+++         EA QLF E +           
Sbjct: 246 YAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRAT--------- 296

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338
                              + +M TQ TY    ATVI L  C+++  L L +++H   ++
Sbjct: 297 -------------------MGKM-TQSTY----ATVIKL--CANLKQLALARQLHSCVLK 330

Query: 339 GCYGEYENVRNALITMYSRCKDLRHAYILFKM-TAEKSIITWNSMLSGYTHLDCAEESAF 397
             +    NV  AL   YS+C +L  A  +F M T  +++++W +++SG         +  
Sbjct: 331 HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           LF  M    V PN  T +++L     +   Q     H  ++ +  +     +  +L+  Y
Sbjct: 391 LFSRMREDRVMPNEFTYSAMLKASLSILPPQ----IHAQVI-KTNYQHIPFVGTALLASY 445

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           ++ G   +A S+F ++ ++D V ++++++ +   G+   A  LF +M    IKP+  T+ 
Sbjct: 446 SKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTIS 505

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           +V+ AC+     V+  +QF  ++  Y     +   + +V +Y R G ++ A+ +  +
Sbjct: 506 SVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER 562



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 197/430 (45%), Gaps = 55/430 (12%)

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP----------WNLLISLYVRDGFYAE 158
           P  VPKL+   AS +   +   L +    RYPL            N ++  Y R G   E
Sbjct: 23  PEQVPKLLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVLE 82

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHE-WSLFVHNALV 216
            L  +   +   +  D+ T   VLKAC  + D   G  +H  C+   H+   +    +LV
Sbjct: 83  VLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLV 142

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            MY K G V     +F+ M +++ V+W ++++  A   +  E   LF  M+ EG+  N  
Sbjct: 143 DMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPF 202

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           T+ ++                                   L A +  GAL LG+ +H  +
Sbjct: 203 TFASV-----------------------------------LSAVASQGALDLGQRVHAQS 227

Query: 337 VR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
           V+ GC      V N+L+ MY++C  +  A  +F     + +++WN++++G    +C  E+
Sbjct: 228 VKFGCRSSV-FVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEA 286

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL--LWNSL 453
             LF E   +  +    T A+++ LCA +  L   ++ H  +L+      HL   +  +L
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF---HLTGNVMTAL 343

Query: 454 VEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
            + Y++ G++ +A ++F + +  R+ V++T++I+G    G+  +A+ LF  M ++++ P+
Sbjct: 344 ADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPN 403

Query: 513 HVTMVAVLSA 522
             T  A+L A
Sbjct: 404 EFTYSAMLKA 413



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 132/306 (43%), Gaps = 3/306 (0%)

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE- 345
           R G    VL+  S  R     +DS      L AC  V    LG+++H   V+  +   E 
Sbjct: 76  RRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEV 135

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           +   +L+ MY +C  +     +F+   +K+++TW S+L+G  H     E   LF  M   
Sbjct: 136 SAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAE 195

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G+ PN  T AS+L   A    L  G+  H   ++       + + NSL+ MYA+ G V +
Sbjct: 196 GIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGC-RSSVFVCNSLMNMYAKCGLVED 254

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           AKSVF+ M  RD V++ +L+AG  +      AL+LF E      K    T   V+  C++
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
              +    +Q       +G          + D Y + G L  A  I +    +     W 
Sbjct: 315 LKQLALA-RQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 586 TLLGAC 591
            ++  C
Sbjct: 374 AIISGC 379



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 6/232 (2%)

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
           Y L ++    + +  N +L  Y       E    F    R GV  +  T++ +L  C  V
Sbjct: 53  YPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSV 112

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
            +   G++ HC  ++       +    SLV+MY + G V E   VF+ M +++ VT+TSL
Sbjct: 113 PDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSL 172

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           + G          + LF  M    I P+  T  +VLSA +  G +  GQ+   +    +G
Sbjct: 173 LTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK-FG 231

Query: 545 IFPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
               +  F C  ++++Y + GL+  AK +   M  T     W TL+   Q++
Sbjct: 232 CRSSV--FVCNSLMNMYAKCGLVEDAKSVFNWME-TRDMVSWNTLMAGLQLN 280


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 194/635 (30%), Positives = 318/635 (50%), Gaps = 82/635 (12%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LV +  ++ + ++A  L ++   R  + WN+++S   + G   EAL +   MQS+ +R D
Sbjct: 211 LVGYVKTYGV-DHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLD 269

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-------CIDACHEWSLFVHNALVSMYGKFGQVDV 227
           + TY S L AC  +  + +G+ +H+       CID       +V +ALV +Y K G    
Sbjct: 270 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP------YVASALVELYAKCG---- 319

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
                                       +KEA  +F  + +     N + W  +  G L+
Sbjct: 320 ---------------------------CFKEAKGVFNSLHDR----NNVAWTVLIAGFLQ 348

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
            G F   +EL ++MR +   LD  A    +  C     L LG+++H   ++    +   V
Sbjct: 349 HGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 408

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSI------------------------------- 376
            N+LI+MY++C +L+ A  +F+   EK I                               
Sbjct: 409 SNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNV 468

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           ITWN+ML  Y      E+   ++  M     V P++VT  ++   CA +   + G +   
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIG 528

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
             ++  +  +  +  N+++ MY++ G++ EA+ VFD ++ +D V++ ++I GY   G G+
Sbjct: 529 RTVKVGLILDTSVA-NAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGK 587

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A+++F+++ K   KPD+++ VAVLS CSHSGLV EG+  F+ M  ++ I P LEHF+CM
Sbjct: 588 QAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCM 647

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           VDL GRAG L +AK++I +MP  PT+ +W  LL AC+IH N  + E AA+ + E    +S
Sbjct: 648 VDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDS 707

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G Y+L+A +YA  G  D  A++R  MRD G++K PG +W++  N    F  DD S+ Q  
Sbjct: 708 GSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVI 767

Query: 676 EIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEIG 710
            I   L  L E +   GYV  +   SE    E++ 
Sbjct: 768 AIRKKLDELMEKIARLGYVRTDSPRSEIHHSEKLA 802



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 225/434 (51%), Gaps = 9/434 (2%)

Query: 69  SHDVVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN 126
           S  V LDS  +   +  C ++ +L  GKQLHA  I      +P +   LV  YA    + 
Sbjct: 263 SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFK 322

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
            A  +  + + R  + W +LI+ +++ G + E++ ++ QM++  +  D F   +++  C 
Sbjct: 323 EAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCC 382

Query: 187 EMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
             MD+  GR +HS C+ +    ++ V N+L+SMY K   +  A  +F  M E+D VSW +
Sbjct: 383 SRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTS 442

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ- 304
           MI+A++  G   +A + F  M  +    NVITWN + G  ++ G  +  L + + M ++ 
Sbjct: 443 MITAHSQVGNIAKAREFFDGMSTK----NVITWNAMLGAYIQHGAEEDGLRMYNVMLSEK 498

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
           +   D V  V     C+ +GA KLG +I G  V+       +V NA+ITMYS+C  +  A
Sbjct: 499 DVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEA 558

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F     K I++WN+M++GY+     +++  +F ++ + G +P+Y++  ++L  C+  
Sbjct: 559 RKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 618

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV-TYTS 483
             +Q GK +   + R    +  L  ++ +V++  R+G + EAK + D M  +     + +
Sbjct: 619 GLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGA 678

Query: 484 LIAGYGIQGEGRVA 497
           L++   I G   +A
Sbjct: 679 LLSACKIHGNNELA 692



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 132/544 (24%), Positives = 232/544 (42%), Gaps = 111/544 (20%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           V  +FA  +  CG   ALA  + LH   +A+GL     L   L+  Y S     +A  L+
Sbjct: 3   VTQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLL 62

Query: 133 ENSNIRYP--LPWNLLISLYVRDGFYAEALCVYKQMQSRRI------------------- 171
             ++I +P  +  N++++ YV+ G  ++A+ ++ +M +R +                   
Sbjct: 63  L-TDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLAS 121

Query: 172 ---------RGDN----FTYPSVLKACGEM-----------MDVDFGRVVHSCIDAC--- 204
                     GD+    FT+   +K+CG +           M   FG    S + A    
Sbjct: 122 LESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVD 181

Query: 205 ------------------HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
                              E ++F  N+++  Y K   VD A  LFD M ERD VSWN M
Sbjct: 182 MFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMM 241

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           +SA +  G  +EA  + V+MQ +GV                                   
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVR---------------------------------- 267

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRG--CYGEYENVRNALITMYSRCKDLRHA 364
            LDS      L AC+ + +L+ GK++H   +R   C   Y  V +AL+ +Y++C   + A
Sbjct: 268 -LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPY--VASALVELYAKCGCFKEA 324

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F    +++ + W  +++G+    C  ES  LF +M    +  +   +A+++  C   
Sbjct: 325 KGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSR 384

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
            +L  G++ H   L+     + +++ NSL+ MYA+   +  A+S+F  M+ +D V++TS+
Sbjct: 385 MDLCLGRQLHSLCLKSGQI-QAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSM 443

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           I  +   G    A + F+ M+   +    +T  A+L A    G   +G + +  M S   
Sbjct: 444 ITAHSQVGNIAKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKD 499

Query: 545 IFPQ 548
           + P 
Sbjct: 500 VRPD 503



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 178/414 (42%), Gaps = 37/414 (8%)

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           ++  HN +++ Y K G++  A  LF +M  RD  SWNT++S Y     +  + + FV M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 268 EEG-VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
             G    N  T+      C   G     L+LL  ++   +  DS      +      G +
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
            L   +    VR         RN+++  Y +   + HA  LF    E+ +++WN M+S  
Sbjct: 190 DLASRLF---VR-IKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
           +      E+  +  +M   GV  +  T  S L  CAR+++L+ GK+ H  ++R     + 
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP 305

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
            +  ++LVE+YA+ G   EAK VF+ +  R+ V +T LIAG+   G    +++LF +M  
Sbjct: 306 YVA-SALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRA 364

Query: 507 NQIKPDHVTMVAVLSACS-----------HSGLVVEGQKQF--------------ERMTS 541
             +  D   +  ++S C            HS  +  GQ Q               + + S
Sbjct: 365 ELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQS 424

Query: 542 IYGIF-----PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
              IF       +  +  M+  + + G + KA+E    M  T     W  +LGA
Sbjct: 425 AESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMS-TKNVITWNAMLGA 477


>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
          Length = 644

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 306/609 (50%), Gaps = 61/609 (10%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
           +PWN L+  ++       AL +Y++M++      +++T P  L+A            +H+
Sbjct: 41  VPWNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLALRAATS----PIASAIHA 96

Query: 200 CIDACHEWSLFVH------NALVSMYGKFGQVDVARRLFDKML-ERDAVSWNTMISAYAS 252
                H   L +H        L++ Y + G+ D A  +FD M  +R  +SWNT+ISAY+ 
Sbjct: 97  -----HALHLGLHAHPDVAGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSV 151

Query: 253 KGLWKEAFQLFVEMQEEGVEV-NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                 A   F  M   G  + + +TW T+     R G    VLEL   M       ++ 
Sbjct: 152 CCDPNNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAE 211

Query: 312 ATVIGLGACSHVGALKL--GKEIHGSAV-RGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           +  + L AC + G L L  G+ IHG  V +G    Y  V N+L+ MY +   +  A  +F
Sbjct: 212 SVAVALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVF 271

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEES--------------------------AF----- 397
           +   E++ +TWN++++ Y      +E+                           F     
Sbjct: 272 REAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGD 331

Query: 398 ------LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
                 LFR M +  + PN VT+A++L  C     ++ G+E H   +R +M + H L+ N
Sbjct: 332 NERALELFRRMQQQWLSPNVVTLATVLSACTEQLAVRLGREVHADAIR-SMVDRHSLVAN 390

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            L+ MYA+ G+V +A++VFD M  RD V++ S++AGYG+ G    AL +F +M + ++ P
Sbjct: 391 GLINMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDP 450

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D VT VAVLSACSH+G V EG++ F++M   + I P +EH+ CMVDL GRAGLL +A E 
Sbjct: 451 DGVTFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEF 510

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I  MP      +W  LL +C+IH +  + E    K L+     +G + LI N+YAA G W
Sbjct: 511 IETMPMGADLCVWGALLNSCRIHGDAAMAEATIAKALQAGVVTTGNHTLITNLYAACGMW 570

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT--SNVQAQEIYPLLGGLTELMK 689
           D   +VR   R+ G+RK PG +WV+  N    F+      S  +A++++ +L  L   M 
Sbjct: 571 DDSKRVRVMTREAGLRKNPGQSWVEVKNKVFAFMAGSVPPSMPRAEDVFRVLDDLYREMD 630

Query: 690 DAGYVVKEE 698
           D    ++E+
Sbjct: 631 DQRRAIEED 639



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 109/252 (43%), Gaps = 39/252 (15%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           ALA+G+ +H   +A G+ +  + V   LV  Y      ++A  +   +  R  + WN LI
Sbjct: 227 ALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFREAGERNTVTWNALI 286

Query: 148 SLYVRDGFYAEALCVYKQMQSR------------------RIRGDN-------------- 175
           + Y   G   EAL V  +M+ R                     GDN              
Sbjct: 287 TSYAAAGMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFRRMQQQW 346

Query: 176 -----FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
                 T  +VL AC E + V  GR VH+  I +  +    V N L++MY K G+V  AR
Sbjct: 347 LSPNVVTLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANGLINMYAKCGRVADAR 406

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
            +FD M  RD VSWN+M++ Y   GL  +A  +F +M E  V+ + +T+  +   C   G
Sbjct: 407 TVFDGMKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAG 466

Query: 290 NFKGVLELLSRM 301
                  L  +M
Sbjct: 467 RVSEGRRLFDQM 478



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 44/249 (17%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G+  +A E F R++    S +VV  + A ++  C +  A+  G+++HA AI   ++
Sbjct: 326 FASSGDNERALELFRRMQQQWLSPNVV--TLATVLSACTEQLAVRLGREVHADAIRSMVD 383

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           ++ ++   L+  YA      +A  + +    R  + WN +++ Y   G   +AL V+  M
Sbjct: 384 RHSLVANGLINMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHGLCDDALAVFTDM 443

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
              ++  D  T+ +VL AC                                     G+V 
Sbjct: 444 AEAKVDPDGVTFVAVLSACSHA----------------------------------GRVS 469

Query: 227 VARRLFDKMLERDAVS-----WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
             RRLFD+M+    +S     +  M+      GL KEA + F+E    G ++ V  W  +
Sbjct: 470 EGRRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASE-FIETMPMGADLCV--WGAL 526

Query: 282 AGGCLRTGN 290
              C   G+
Sbjct: 527 LNSCRIHGD 535


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 183/596 (30%), Positives = 311/596 (52%), Gaps = 40/596 (6%)

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           +G   + +L   L+  Y        AC + +    R  + W  L+  ++++G   E+L +
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           + +M    ++ ++FT+ + LKACG +  +D GR +H  C+    +    V N+++ MY K
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G+++ A  +F+ M  R+ +SWN MI+ Y                             T+
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGY-----------------------------TV 151

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG-- 339
           AG C +       L L  +M+    +LD       L ACS +GA+K G +IH   + G  
Sbjct: 152 AGFCEKA------LVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGF 205

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            Y     V  ALI +Y +C  L  A  +F    EK +I+W +++ GY       ES  LF
Sbjct: 206 LYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELF 265

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R++  S ++ +   ++S++ + A  A +Q GK+ H + ++       + + NS+++MY +
Sbjct: 266 RQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPS-GVDISVCNSILDMYLK 324

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G + EA+ +F  M  R+ +++T +I GYG  G G+ A++LF+EM  +  +PD VT +AV
Sbjct: 325 CGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAV 384

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           L  CSHSGLV +GQ+ F R+ S +GI  ++EH+ACMVDL GRAG L +AK ++  MP   
Sbjct: 385 LLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEA 444

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
              +W TLL AC++H +  +G+     LL    EN   YV+++N+YA  G W +  ++R 
Sbjct: 445 NVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRE 504

Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA-GYV 694
            ++   ++K  G +WV+       F   D ++   ++I+ +L  +   MK+  GYV
Sbjct: 505 LVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYV 560



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 200/422 (47%), Gaps = 39/422 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+  +  CG +  L  G+Q+H   +  G +   V+   ++  Y+     N A  + E  
Sbjct: 75  TFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVM 134

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R  + WN +I+ Y   GF  +AL ++++MQ      D FT+ S LKAC ++  +  G 
Sbjct: 135 PVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGN 194

Query: 196 VVHSCIDA---CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
            +H+ +      +  +  V  AL+ +Y K G++ +ARR+F  + E+  +SW  +I  YA 
Sbjct: 195 QIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQ 254

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
           +G   E+ +LF +++E  ++V+                      +LS M           
Sbjct: 255 EGNLAESMELFRQLRESSIQVDGF--------------------ILSSM----------- 283

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               +G  +    ++ GK++H  A++   G   +V N+++ MY +C  +  A  LF    
Sbjct: 284 ----MGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMP 339

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            +++I+W  M++GY      +E+  LF EM     EP+ VT  ++L  C+    ++ G+E
Sbjct: 340 ARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQE 399

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV-TYTSLIAGYGIQ 491
           +   +         +  +  +V++  R+G++ EAK++ D M     V  + +L++   + 
Sbjct: 400 YFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVH 459

Query: 492 GE 493
           G+
Sbjct: 460 GD 461


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  311 bits (797), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 172/537 (32%), Positives = 283/537 (52%), Gaps = 37/537 (6%)

Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVS 217
           AL ++K+M  + ++ D FT+ SVLKAC  M  +  G  VH+ I  +  + + FV N L+ 
Sbjct: 105 ALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQ 164

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY   GQ+ VAR                                +F  M E     +++ 
Sbjct: 165 MYANCGQIGVAR-------------------------------HVFDGMPER----SIVA 189

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           WN++  G  + G +  V++L  ++       D V  +  L AC  +  L++G+ I    V
Sbjct: 190 WNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIV 249

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
                    +  +LI MY++C  +  A  LF    ++ ++ W++M+SGY   D  +E+  
Sbjct: 250 SKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALN 309

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           LF EM +  V PN VT+ S+L  CA +   + GK  H YI ++ M    + L   L++ Y
Sbjct: 310 LFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKM-KLTVTLGTQLIDFY 368

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           A+ G +  +  VF  MS ++  T+T+LI G    GEG++AL+ F  M +N +KP+ VT +
Sbjct: 369 AKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFI 428

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
            VLSACSH+ LV +G+  F  M   + I P++EH+ CMVD+ GRAG L +A + I  MP+
Sbjct: 429 GVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPF 488

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637
            P + +W TLL +C+ H+N  + E + E +    P +SG Y+L++N YA  G  +   +V
Sbjct: 489 PPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRV 548

Query: 638 RTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           R+ +++  ++KIPGC+ ++   V   F  +D  +  ++EI+  L  + + +K  GYV
Sbjct: 549 RSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYV 605



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 214/472 (45%), Gaps = 41/472 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           ++  A + +   A   F ++   +  HD    +F+ ++  C ++KAL +G+Q+HA  +  
Sbjct: 93  IRGLAFKRSPDNALLLFKKMHEKSVQHDKF--TFSSVLKACSRMKALREGEQVHALILKS 150

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G + N  +   L+  YA+      A  + +    R  + WN ++S Y ++G + E + ++
Sbjct: 151 GFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLF 210

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV-HSCIDACHEWSLFVHNALVSMYGKF 222
           +++   RI  D+ T  SVL ACG + +++ G ++    +      +  +  +L+ MY K 
Sbjct: 211 RKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKC 270

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           GQVD AR+LFD+M +RD V+W+ MIS YA     KEA  LF EMQ+  V           
Sbjct: 271 GQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNV----------- 319

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                   Y + V  V  L +C+ +GA + GK +H    +    
Sbjct: 320 ------------------------YPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMK 355

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               +   LI  Y++C  +  +  +FK  + K++ TW +++ G  +    + +   F  M
Sbjct: 356 LTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSM 415

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             + V+PN VT   +L  C+    +  G+     + R       +  +  +V++  R+G 
Sbjct: 416 LENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGF 475

Query: 463 VPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + EA    D M    + V + +L+A         +A K  E + +  ++P H
Sbjct: 476 LEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITR--LEPAH 525



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 118/235 (50%), Gaps = 2/235 (0%)

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           + +A  +F    +     +N M+ G       + +  LF++M    V+ +  T +S+L  
Sbjct: 71  IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           C+R+  L+ G++ H  IL+   F  +  + N+L++MYA  G++  A+ VFD M  R  V 
Sbjct: 131 CSRMKALREGEQVHALILKSG-FKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVA 189

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           + S+++GY   G     +KLF ++ + +I+ D VTM++VL AC     +  G+   E + 
Sbjct: 190 WNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIV 249

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           S  G+         ++D+Y + G ++ A+++  +M      A  A + G  Q  R
Sbjct: 250 S-KGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADR 303


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  311 bits (797), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 180/582 (30%), Positives = 294/582 (50%), Gaps = 61/582 (10%)

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
           + L W  +I  Y   G    +L  +  ++S  I  D   +PS+L+A       +  + +H
Sbjct: 40  HSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLH 99

Query: 199 SC-IDACHEWSLFVHNALVSMYGKFG----------------------QVDVARRLFDKM 235
           +  I     + L+  NAL++MY KF                       ++D  R+LFD+M
Sbjct: 100 AAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRM 159

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             RD                                   V++WNT+  G  + G ++  L
Sbjct: 160 PVRD-----------------------------------VVSWNTVIAGNAQNGMYEEAL 184

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
            ++  M  +    DS      L   +    +  GKEIHG A+R  + +   + ++LI MY
Sbjct: 185 NMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMY 244

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++C  +  +   F + + +  I+WNS+++G       ++    FR M +  V+P  V+ +
Sbjct: 245 AKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFS 304

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL--M 473
           S++P CA +  L  GK+ H YI+R   F+++  + +SL++MYA+ G +  A+ +F+   M
Sbjct: 305 SVIPACAHLTALNLGKQLHAYIIRLG-FDDNKFIASSLLDMYAKCGNIKMARYIFNKIEM 363

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             RD V++T++I G  + G    A+ LFEEM  + +KP +V  +AVL+ACSH+GLV EG 
Sbjct: 364 CDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGW 423

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
           K F  M   +G+ P LEH+A + DL GRAG L +A + I+ M   PT ++W+TLL AC+ 
Sbjct: 424 KYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRA 483

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           H+N  + E    K+L   P N G +V+++N+Y+A   W   AK+R  MR  G++K P C+
Sbjct: 484 HKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACS 543

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
           W++ GN    FL  D S+    +I   L  L E M+  GYV+
Sbjct: 544 WIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVL 585



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 205/460 (44%), Gaps = 65/460 (14%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K +A  G L  +  +F  +R    S D  L  F  ++      K     + LHA  I L
Sbjct: 48  IKCYASHGLLRHSLASFNLLRSFGISPDRHL--FPSLLRASTLFKHFNLAQSLHAAVIRL 105

Query: 104 GLEKNPVLVPKLVTFYASFSLY----------------------NNACFLVENSNIRYPL 141
           G   +      L+  Y+ F  +                      ++   L +   +R  +
Sbjct: 106 GFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVV 165

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-C 200
            WN +I+   ++G Y EAL + K+M    +R D+FT  S+L    E  +V  G+ +H   
Sbjct: 166 SWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYA 225

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           I    +  +F+ ++L+ MY K  QV+++   F  +  RDA+SWN++I+     G + +  
Sbjct: 226 IRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGL 285

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
             F  M +E V+   ++++++                                   + AC
Sbjct: 286 GFFRRMLKEKVKPMQVSFSSV-----------------------------------IPAC 310

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA-YILFKM-TAEKSIIT 378
           +H+ AL LGK++H   +R  + + + + ++L+ MY++C +++ A YI  K+   ++ +++
Sbjct: 311 AHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVS 370

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W +++ G      A ++  LF EM   GV+P YV   ++L  C+    +  G ++   + 
Sbjct: 371 WTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQ 430

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
           R       L  + ++ ++  R+G++ EA   +D +S   E
Sbjct: 431 RDFGVAPGLEHYAAVADLLGRAGRLEEA---YDFISNMGE 467



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 24/221 (10%)

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
           HA I+    A    + W  ++  Y        S   F  +   G+ P+     S+L    
Sbjct: 28  HAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRAST 87

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR----------------------S 460
              +    +  H  ++R   F+  L   N+L+ MY++                      S
Sbjct: 88  LFKHFNLAQSLHAAVIRLG-FHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYS 146

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
            K+   + +FD M  RD V++ ++IAG    G    AL + +EM K  ++PD  T+ ++L
Sbjct: 147 VKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSIL 206

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
              +    V +G K+       +G    +   + ++D+Y +
Sbjct: 207 PIFTEHANVTKG-KEIHGYAIRHGFDKDVFIGSSLIDMYAK 246



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 5/179 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SF+ +I  C  + AL  GKQLHA  I LG + N  +   L+  YA       A ++    
Sbjct: 302 SFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKI 361

Query: 136 NI--RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
            +  R  + W  +I      G   +A+ ++++M    ++     + +VL AC     VD 
Sbjct: 362 EMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDE 421

Query: 194 GRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS-WNTMISA 249
           G    + +  D      L  + A+  + G+ G+++ A      M E    S W+T+++A
Sbjct: 422 GWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAA 480


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  311 bits (797), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 179/537 (33%), Positives = 290/537 (54%), Gaps = 46/537 (8%)

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V + L  +Y    QV +ARRLFD++     + WN +I AYA  G +  A  L+  M   G
Sbjct: 45  VLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG 104

Query: 271 VEVNVITWNTIAGGC--------------------LRTGNFK-----------GVLELLS 299
           V  N  T+  +   C                    L +  F            G+L    
Sbjct: 105 VRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQ 164

Query: 300 RMRTQETYLDSVATVIGLGACSHVG----ALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
           R+ +  ++ D VA    +  CS  G    A++L  ++    +  C        + ++ + 
Sbjct: 165 RLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI--CPNS-----STIVGVL 217

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
             C+ L +A  +F +   ++ ++W++M+ GY   DC +E+  +FR M  SG++P+  T+ 
Sbjct: 218 PTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTML 277

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
            +LP C+ +A LQHG   H Y++ R  F    L+ N+L++MY++ GK+  A+ VF+ M R
Sbjct: 278 GVLPACSHLAALQHGFCSHGYLIVRG-FATDTLICNALIDMYSKCGKISFAREVFNRMDR 336

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            D V++ ++I GYGI G G  AL LF ++    +KPD +T + +LS+CSHSGLV+EG+  
Sbjct: 337 HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLW 396

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F+ M+  + I P++EH  CMVD+ GRAGL+++A   I  MP+ P   +W+ LL AC+IH+
Sbjct: 397 FDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHK 456

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  +GE  ++K+    PE++G +VL++N+Y+A G WD  A +R   +D G++KIPGC+W+
Sbjct: 457 NIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWI 516

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
           +   +   F+  D S++Q  +I   L  L   MK  GY  +  F     EEE  E+I
Sbjct: 517 EINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQI 573



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 211/468 (45%), Gaps = 42/468 (8%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           V +++ H++  C + K+L + K++H   +      +  ++ KL   Y S     N   L 
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC----NQVVLA 62

Query: 133 ENSNIRYPLP----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
                  P P    WN +I  Y  +G +  A+ +Y  M    +R + +TYP VLKAC  +
Sbjct: 63  RRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGL 122

Query: 189 MDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
           + ++ G  +HS       E  +FV  ALV  Y K G +  A+RLF  M  RD V+WN MI
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNV----------------------------ITWN 279
           +  +  GL  +A QL ++MQEEG+  N                             ++W+
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWS 242

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
            + GG + +   K  L++   M+      D    +  L ACSH+ AL+ G   HG  +  
Sbjct: 243 AMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 302

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +     + NALI MYS+C  +  A  +F       I++WN+M+ GY       E+  LF
Sbjct: 303 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLF 362

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            ++   G++P+ +T   +L  C+    +  G+ +   + R       +     +V++  R
Sbjct: 363 HDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGR 422

Query: 460 SGKVPEAKSVFDLMSRRDEV-TYTSLIAGYGIQGEGRVALKLFEEMNK 506
           +G + EA      M    +V  +++L++   I       ++L EE++K
Sbjct: 423 AGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKN----IELGEEVSK 466



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 9/273 (3%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L AC    +L   K+IH   ++       +V + L  +Y  C  +  A  LF      S+
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           I WN ++  Y      + +  L+  M   GV PN  T   +L  C+ +  ++ G E H +
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
             +       + +  +LV+ YA+ G + EA+ +F  MS RD V + ++IAG  + G    
Sbjct: 135 A-KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A++L  +M +  I P+  T+V VL  C     ++  +K F+ M    G+  ++  ++ M+
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTCQ---CLLYARKIFDVM----GVRNEVS-WSAMI 245

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
             Y  +  + +A +I   M  +       T+LG
Sbjct: 246 GGYVASDCMKEALDIFRMMQLSGIDPDLTTMLG 278



 Score = 42.7 bits (99), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 9/202 (4%)

Query: 53  LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112
           + +A + F  ++++    D  L +   ++  C  + AL  G   H   I  G   + ++ 
Sbjct: 254 MKEALDIFRMMQLSGIDPD--LTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLIC 311

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
             L+  Y+     + A  +    +    + WN +I  Y   G   EAL ++  + +  ++
Sbjct: 312 NALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 371

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN----ALVSMYGKFGQVDVA 228
            D+ T+  +L +C     V  GR+    +    ++S+         +V + G+ G +D A
Sbjct: 372 PDDITFICLLSSCSHSGLVMEGRLWFDAMS--RDFSIVPRMEHCICMVDILGRAGLIDEA 429

Query: 229 RRLFDKM-LERDAVSWNTMISA 249
                 M  E D   W+ ++SA
Sbjct: 430 HHFIRNMPFEPDVRIWSALLSA 451


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  311 bits (797), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 205/705 (29%), Positives = 351/705 (49%), Gaps = 71/705 (10%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A EAF   +   +S  + L ++  +I  C   ++LAQG+++H   +    + + +L   
Sbjct: 46  EALEAFDFAQ-KNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNH 104

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           +++ Y       +A  + +    R  + +  +I+ Y ++G  AEA+ +Y +M    +  D
Sbjct: 105 ILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPD 164

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFD 233
            F + S++KAC    DV  G+ +H+ +      S L   NAL++MY +F Q+  A ++F 
Sbjct: 165 QFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFY 224

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEM--------------------------- 266
            +  +D +SW+++I+ ++  G   EA     EM                           
Sbjct: 225 GIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPD 284

Query: 267 ---QEEGVEVNV-ITWNTIAGGCL-----RTGNFKGVLELLSRMRTQET----------- 306
              Q  G+ + + +T N IAG  L     R G       + +++   +T           
Sbjct: 285 YGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLA 344

Query: 307 ---YLDSVATVIG-----------------LGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
              Y D   +V                   L A +   AL  G +IH   ++  +    +
Sbjct: 345 NNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLS 404

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKS-IITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           V N+L+TMY+ C DL   + LF+    K+  ++WN++L+     +   E   LF+ M  S
Sbjct: 405 VCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVS 464

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
             EP+++T+ ++L  C  +++L+ G + HCY  +  +  E   + N L++MYA+ G + +
Sbjct: 465 ECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQ-FIKNGLIDMYAKCGSLRQ 523

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ +FD M   D V++++LI GY   G G  AL LF EM  + I+P+HVT V VL+ACSH
Sbjct: 524 ARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSH 583

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
            GLV EG K +  M + +GI P  EH +C+VDL  RAG LN+A+  I +M   P   +W 
Sbjct: 584 VGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWK 643

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
           TLL AC+   N  + + AAE +L+  P NS  +VL+ +M+A++G W+  A +R+ M+   
Sbjct: 644 TLLSACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKKHD 703

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
           V+KIPG +W+D  +    F  +D  + +  +IY +L  +   M D
Sbjct: 704 VKKIPGQSWIDVEDKIHIFFAEDVLHPERDDIYTVLHNIWSQMLD 748



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 116/468 (24%), Positives = 203/468 (43%), Gaps = 48/468 (10%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-----RIRGDNFTYPSVLKACGEMM 189
           S I+     N  I+   R+ FY EAL  +   Q       R+R    TY S++ AC    
Sbjct: 23  STIKTEELMNDHINSLCRNSFYREALEAFDFAQKNSSFKIRLR----TYISLICACSSSR 78

Query: 190 DVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
            +  GR +H  I ++  ++   ++N ++SMYGK G +  AR +FD M ER+ VS+ ++I+
Sbjct: 79  SLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVIT 138

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            Y+  G   EA  L+++M +  +  +   + +I                           
Sbjct: 139 GYSQNGQEAEAITLYLKMLQADLVPDQFAFGSI--------------------------- 171

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                   + AC+  G + LGK++H   ++     +   +NALI MY R   +  A  +F
Sbjct: 172 --------IKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVF 223

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANL 427
                K +I+W+S+++G++ L    E+    +EM   GV  PN     S L  C+ +   
Sbjct: 224 YGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRP 283

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            +G + H   ++  +   + +   SL +MYAR G +  A+ VF+ + R D  ++  +IAG
Sbjct: 284 DYGSQIHGLCIKLEL-TGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAG 342

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
               G    A+ +F EM  +   PD +++ ++L A +    + +G  Q        G   
Sbjct: 343 LANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGM-QIHSFIIKCGFLA 401

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
            L     ++ +Y     L     +         S  W  +L AC  H 
Sbjct: 402 DLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHE 449



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 126/267 (47%), Gaps = 18/267 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
            A  G   +A   F+ +R +    D +  S   ++    K  AL QG Q+H+  I  G  
Sbjct: 343 LANNGYADEAVSVFSEMRNSGFIPDAI--SLRSLLCAQTKPMALCQGMQIHSFIIKCGFL 400

Query: 107 KNPVLVPKLVTFYASFS-LYNNACF-LVEN-SNIRYPLPWNLLISLYVRDGFYAEALCVY 163
            +  +   L+T Y   S LY   CF L E+  N    + WN +++  ++     E L ++
Sbjct: 401 ADLSVCNSLLTMYTFCSDLY--CCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLF 458

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL------FVHNALVS 217
           K M       D+ T  ++L+ C E+  +  G  VH     C+ W        F+ N L+ 
Sbjct: 459 KLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVH-----CYSWKTGLVLEQFIKNGLID 513

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY K G +  ARR+FD M   D VSW+T+I  YA  G  +EA  LF EM+  G+E N +T
Sbjct: 514 MYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVT 573

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           +  +   C   G  +  L+L + M+T+
Sbjct: 574 FVGVLTACSHVGLVEEGLKLYAIMQTE 600


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  311 bits (797), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 182/597 (30%), Positives = 310/597 (51%), Gaps = 42/597 (7%)

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           Y+   L N A  L++ +  R  + W  LIS  V++G+++ AL  + +M+   I+ ++FT+
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTF 61

Query: 179 PSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           P   KA   +     G+ +H+  +        FV  +   MY K G    A+RLFD+M  
Sbjct: 62  PCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPP 121

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           R+   WN  IS     G   +A   F+E +  G E ++IT+                   
Sbjct: 122 RNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAF---------------- 165

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
                              L AC+    L LG+++HG  +R  +    +V N +I +Y +
Sbjct: 166 -------------------LNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGK 206

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
           CK++  A ++F     ++ ++W +M++     D  E++  +F    + G+E     ++S+
Sbjct: 207 CKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSV 266

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           +   A ++ L+ G+  H   ++ A     + + ++LV+MY + G + + + VF  M  R+
Sbjct: 267 ISAYAGISGLEFGRSVHALAVK-ACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERN 325

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            V++ ++I+GY  QG+  +A+ LFEEM    +  ++VT++ VLSACS  G V  G + FE
Sbjct: 326 LVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV-ANYVTLICVLSACSRGGAVKLGNEIFE 384

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
            M   Y I P  EH+AC+ D+ GRAG++ +A E + KMP  PT ++W  LL AC+++   
Sbjct: 385 SMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEP 444

Query: 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDA 657
            +G+ AA+ L +  P++SG +VL++NM+AA G WD+   VR  M+D+G++K  GC+WV A
Sbjct: 445 ELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTA 504

Query: 658 GNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC----SEEEIVEEIG 710
            N    F   DTS+ +  EI  +L  L   M+ AGY+    +      EEE + E+G
Sbjct: 505 KNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLEEEEKMTEVG 561



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 190/412 (46%), Gaps = 45/412 (10%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           GKQ+HA A+ LG   +  +       Y+   L   A  L +    R    WN  IS  V 
Sbjct: 77  GKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVL 136

Query: 153 DGFYAEALCVYKQMQSRRIRG--DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSL 209
           DG   +A  + K ++ RR+ G  D  T+ + L AC +   +D GR +H   I +  E  +
Sbjct: 137 DGRPGKA--IDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDV 194

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            V N ++ +YGK  +V++A  +F+ M  R++VSW TM++A       ++A  +F+  ++E
Sbjct: 195 SVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKE 254

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G+E+                                 Y+  V++VI   A + +  L+ G
Sbjct: 255 GIELT-------------------------------DYM--VSSVI--SAYAGISGLEFG 279

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           + +H  AV+ C      V +AL+ MY +C  +     +F    E+++++WN+M+SGY H 
Sbjct: 280 RSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQ 339

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              + +  LF EM +S    NYVT+  +L  C+R   ++ G E    +  R         
Sbjct: 340 GDVDMAMTLFEEM-QSEAVANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEH 398

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSLIAGYGIQGE---GRVA 497
           +  + +M  R+G V  A      M  R  ++ + +L+    + GE   G++A
Sbjct: 399 YACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIA 450



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 117/255 (45%), Gaps = 4/255 (1%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   KA + F   R      D++  +F   +  C   + L  G+QLH   I  G E +  
Sbjct: 138 GRPGKAIDKFIEFRRVGGEPDLI--TFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVS 195

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   ++  Y        A  +      R  + W  +++   ++    +A  V+   +   
Sbjct: 196 VANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEG 255

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           I   ++   SV+ A   +  ++FGR VH+  + AC E  +FV +ALV MYGK G ++   
Sbjct: 256 IELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCE 315

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           ++F +M ER+ VSWN MIS YA +G    A  LF EMQ E V  N +T   +   C R G
Sbjct: 316 QVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV-ANYVTLICVLSACSRGG 374

Query: 290 NFKGVLELLSRMRTQ 304
             K   E+   MR +
Sbjct: 375 AVKLGNEIFESMRDR 389



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 107/239 (44%), Gaps = 3/239 (1%)

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MYS+      A +L ++T  + ++TW +++SG         +   F +M R  ++PN  T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
                     +     GK+ H   L+    N+   +  S  +MY+++G   EA+ +FD M
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDK-FVGCSAFDMYSKTGLKFEAQRLFDEM 119

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
             R+   + + I+   + G    A+  F E  +   +PD +T  A L+AC+ +  +  G 
Sbjct: 120 PPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLG- 178

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           +Q   +    G    +     ++D+YG+   +  A+ +   M     S  W T++ AC+
Sbjct: 179 RQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRR-NSVSWCTMVAACE 236


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 192/646 (29%), Positives = 319/646 (49%), Gaps = 61/646 (9%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  KA E F ++ +     D V    A  +  C ++ +L  GKQ+H  AI     ++  
Sbjct: 241 GDYFKALELFVQMLVDEVKFDCVTMLVA--VQACAELGSLKLGKQIHQLAIKFEFVEDLY 298

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           ++  L+  Y++     ++  L E+   R    WN +IS Y   G + EA+ ++ +MQS  
Sbjct: 299 ILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEG 358

Query: 171 IRGDNFTYPSVLKACGEMMD-VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVA 228
           ++ D  T   +L  C E+   +  G+ +H+  I +       + NAL+SMY +   V+  
Sbjct: 359 VKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESV 418

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT 288
           +++FD+M                 KG                  V++I+WNT+     R 
Sbjct: 419 QKIFDRM-----------------KG------------------VDIISWNTMILALARN 443

Query: 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
                  EL  RMR  E   +S   +  L AC  V  L  G+ IHG  ++      + +R
Sbjct: 444 TLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLR 503

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
            AL  MY  C D   A  LF+   ++ +I+WN+M+                        E
Sbjct: 504 TALADMYMNCGDEATARDLFEGCPDRDLISWNAMIXK---------------------AE 542

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAK 467
           PN VTI ++L     +A L  G+  H Y+ RR       L L N+ + MYAR G +  A+
Sbjct: 543 PNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAE 602

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           ++F  + +R+ +++ ++IAGYG+ G G  A+  F +M ++  +P+ VT V+VLSACSHSG
Sbjct: 603 NIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSG 662

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            +  G + F  M   + + P+L H++C+VDL  R G +++A+E I  MP  P +++W  L
Sbjct: 663 FIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRAL 722

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           L +C+ + +    +   EKL +  P N+G YVL++N+YA  G W ++ ++RT +++ G+R
Sbjct: 723 LSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLR 782

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           K PG +W+   N    F   D S+ Q+ +IY  L  L   M++ GY
Sbjct: 783 KPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRETGY 828



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 210/447 (46%), Gaps = 40/447 (8%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C    A+ +GK +H       L  +  +   +V FY       +A  + +  + R 
Sbjct: 66  VLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRD 125

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN ++  YV  G Y EA+ + ++M    +R ++ T  ++L AC    ++  GR VH 
Sbjct: 126 VVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHG 185

Query: 200 -CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
            C+ +   + +  V  AL+  Y +F  + V   LFD M+ R                   
Sbjct: 186 YCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVR------------------- 225

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
                           N+++WN +  G    G++   LEL  +M   E   D V  ++ +
Sbjct: 226 ----------------NIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAV 269

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+ +G+LKLGK+IH  A++  + E   + NAL+ MYS    L  ++ LF+    +   
Sbjct: 270 QACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAP 329

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN-LQHGKEFHCY 436
            WNSM+S Y    C EE+  LF  M   GV+ +  T+  +L +C  +A+ L  GK  H +
Sbjct: 330 LWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAH 389

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           +++  M  +   L N+L+ MY     V   + +FD M   D +++ ++I           
Sbjct: 390 VIKSGMRIDA-SLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQ 448

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           A +LFE M +++IKP+  T++++L+AC
Sbjct: 449 ACELFERMRESEIKPNSYTIISILAAC 475



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 184/397 (46%), Gaps = 41/397 (10%)

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           I+ P  WN +I            L  Y QM+S  +  +N T P VLKAC     V+ G+ 
Sbjct: 22  IKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKS 81

Query: 197 VHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H  I        + V  A+V  Y K G V+ AR +FD M +RD V WN M+  Y     
Sbjct: 82  IHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGY----- 136

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                               + W     GC     ++  + L+  M  +    +S   V 
Sbjct: 137 --------------------VGW-----GC-----YEEAMLLVREMGRENLRPNSRTMVA 166

Query: 316 GLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
            L AC     L+LG+ +HG  +R G +    +V  ALI  Y R  D+R   +LF +   +
Sbjct: 167 LLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVR 225

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           +I++WN+M+SGY  +    ++  LF +M    V+ + VT+   +  CA + +L+ GK+ H
Sbjct: 226 NIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIH 285

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
              ++   F E L + N+L+ MY+ +G +  +  +F+ +  RD   + S+I+ Y   G  
Sbjct: 286 QLAIKFE-FVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCH 344

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSH--SGLV 529
             A+ LF  M    +K D  T+V +LS C    SGL+
Sbjct: 345 EEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLL 381



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 201/467 (43%), Gaps = 67/467 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHD---VVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +A  G   +A + F R++      D   VV+     +  C      L +GK LHA  I  
Sbjct: 338 YAAFGCHEEAMDLFIRMQSEGVKKDERTVVI----MLSMCEELASGLLKGKSLHAHVIKS 393

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G+  +  L   L++ Y   +   +   + +       + WN +I    R+   A+A  ++
Sbjct: 394 GMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELF 453

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
           ++M+   I+ +++T  S+L AC ++  +DFGR +H   +    E +  +  AL  MY   
Sbjct: 454 ERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNC 513

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G    AR LF+   +RD +SWN MI                        E N +T     
Sbjct: 514 GDEATARDLFEGCPDRDLISWNAMIXK---------------------AEPNSVT----- 547

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY- 341
                      ++ +LS                     +H+  L  G+ +H    R  + 
Sbjct: 548 -----------IINVLSSF-------------------THLATLPQGQSLHAYVTRRGFS 577

Query: 342 -GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
            G   ++ NA ITMY+RC  L+ A  +FK   +++II+WN+M++GY       ++   F 
Sbjct: 578 LGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFS 637

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M   G  PN VT  S+L  C+    ++ G +    +++       L+ ++ +V++ AR 
Sbjct: 638 QMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARG 697

Query: 461 GKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           G + EA+   D M    D   + +L++      + + A  +FE+++K
Sbjct: 698 GCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDK 744



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 155/313 (49%), Gaps = 3/313 (0%)

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           WN++        N + +L   ++M +     ++    + L AC+   A++ GK IH S  
Sbjct: 28  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 87

Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
                +   V  A++  Y +C  +  A  +F   +++ ++ WN+M+ GY    C EE+  
Sbjct: 88  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 147

Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457
           L REM R  + PN  T+ ++L  C   + L+ G+  H Y LR  MF+ +  +  +L+  Y
Sbjct: 148 LVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY 207

Query: 458 ARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
            R   +     +FDLM  R+ V++ ++I+GY   G+   AL+LF +M  +++K D VTM+
Sbjct: 208 LRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTML 266

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
             + AC+  G +  G KQ  ++   +     L     ++++Y   G L  + ++   +P 
Sbjct: 267 VAVQACAELGSLKLG-KQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVP- 324

Query: 578 TPTSAMWATLLGA 590
              + +W +++ A
Sbjct: 325 NRDAPLWNSMISA 337


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 184/593 (31%), Positives = 310/593 (52%), Gaps = 39/593 (6%)

Query: 66  TAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125
           T   H      F+ I+  C     L  G  +H   + L +    ++  KL++ Y  F   
Sbjct: 51  TIDDHSFKFHQFSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHI 110

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYA-EALCVYKQMQSRRIRGDNFTYPSVLKA 184
           ++A  L +    R  + +N +IS  VR+ + A + + +Y +M+   ++ ++ T+  ++ A
Sbjct: 111 HHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGA 170

Query: 185 CGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           C  ++ +    + H+    C   S  FV ++LV  Y K  +++ A + F++++       
Sbjct: 171 CDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIM------- 223

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
                                       E+++++WN +  GC R  + +  + + S+M  
Sbjct: 224 ----------------------------ELDLVSWNIMIDGCARNNSKEHAVRMFSQMLK 255

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC-KDLR 362
               +D       +  CS  G LK G + HGSA++        + NALITMYS+C K + 
Sbjct: 256 GNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVA 315

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
               +F   +E +II+W +M+SG+   +  EE+  LF+EM R GV  N  + +SILP+  
Sbjct: 316 SPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYG 375

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            +ANL+ GK+ H  I++ + F   L + N+L++MY++ G + +A  VF  M + D V+ T
Sbjct: 376 NLANLEQGKQIHARIIK-SWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCT 434

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           ++I  YG  G+G+ AL++  EM    + PD VT +  L ACSH GLV EG + F+ M   
Sbjct: 435 TMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIED 494

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602
           + + P+ EHFAC+VD+ GRAG LN+A+  I +M       +W TLLGAC++H    +GE 
Sbjct: 495 HNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGACRVHGEMVLGEK 554

Query: 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           +A+K++E +P   G YVL+AN+YA  G W+    VR  +   G++K  GC+WV
Sbjct: 555 SAQKIMELQPGRHGPYVLLANIYAERGSWEDKVMVREKLVSHGLKKQVGCSWV 607


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 187/628 (29%), Positives = 323/628 (51%), Gaps = 47/628 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S  H++  C  +++    +Q HA  +A G  +N  L  +LV+ YA+      + F+ E+ 
Sbjct: 30  SLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESV 89

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +    WN LI+ YV++  + +AL ++++M    +  D++T  +V K  GE+ D+  G+
Sbjct: 90  EAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGK 149

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK- 253
           ++H   I       + V N+L+SMY + G+   A ++FD+   R+  S+N +IS  A+  
Sbjct: 150 LIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALE 209

Query: 254 ----GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
                   +    F+ MQ EG + +  T  ++   C                        
Sbjct: 210 NCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVC------------------------ 245

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYG----EYENVRNALITMYSRCKDLRHAY 365
                     C   G    G+E+H   V+           ++ ++LI MYSR K +    
Sbjct: 246 ----------CGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYSRSKKVVLGR 295

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARV 424
            +F     +++  W +M++GY      +++  L R M  + G+ PN V++ S LP C  +
Sbjct: 296 RVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKVSLISALPACGLL 355

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RDEVTYTS 483
           A L  GK+ H + ++  + N+ + L N+L++MY++ G +  A+  F+  S  +D +T++S
Sbjct: 356 AGLIGGKQIHGFSIKMEL-NDDVSLCNALIDMYSKCGSLDYARRAFETSSYFKDAITWSS 414

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +I+ YG+ G G  A+  + +M +   KPD +T+V VLSACS SGLV EG   ++ + + Y
Sbjct: 415 MISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLVDEGISIYKSLMTKY 474

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
            I P +E  AC+VD+ GR+G L++A E I +MP  P  ++W +LL A  IH N+   + A
Sbjct: 475 EIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSVWGSLLTASVIHGNSRTRDLA 534

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
              LLE  PEN   Y+ ++N YA+   WD + +VRT M++ G++K+PGC+W+        
Sbjct: 535 YRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTIMKERGLKKVPGCSWITISGKTHS 594

Query: 664 FLVDDTSNVQAQEIYPLLGGLTELMKDA 691
           F V D ++  +  IY +LG L  +M D 
Sbjct: 595 FSVADKAHPSSSLIYEMLGDLVSIMTDG 622


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 194/642 (30%), Positives = 331/642 (51%), Gaps = 45/642 (7%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           DVV  +   I+  C     +  G  +H  A+ LGL +  ++   +V  Y+     N A  
Sbjct: 247 DVV--TVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQM 304

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ--SRRIRGDNFTYPSVLKACGEM 188
               +N +  + WN +IS +  +G   EA  + ++MQ     ++ +  T  +VL AC + 
Sbjct: 305 SFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDK 364

Query: 189 MDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           + +         +   H +S F H         F  V+++               N  I 
Sbjct: 365 LQL-------RSLKELHGYS-FRHC--------FQHVELS---------------NAFIL 393

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
           AYA  G    A ++F  + ++ V     +WN + GG  + G+ +  L LL +M       
Sbjct: 394 AYAKCGALNSAEKVFHGIGDKTVS----SWNALIGGHAQNGDPRKALHLLFQMTYSGQQP 449

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           D       L AC+H+ +L+ GKEIHG  +R        V  +L++ Y  C     A +LF
Sbjct: 450 DWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLF 509

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
               +K++++WN+M+SGY+      ES  LFR+    G++ + + I S+   C++++ L+
Sbjct: 510 DRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALR 569

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GKE H Y+L+ A+  E   +  S+++MYA+SG + E++ VFD +  ++  ++ ++I  +
Sbjct: 570 LGKEAHGYVLK-ALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAH 628

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           GI G G+ A++L+E M K    PD  T + +L AC H+GLV EG K F+ M +   I P+
Sbjct: 629 GIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPK 688

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
           LEH+AC++D+  RAG L+ A  ++ +MP    + +W++LL +C+      IGE  A+KLL
Sbjct: 689 LEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLL 748

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P+ +  YVL++N+YA  G WD + +VR  M+++G++K  GC+W++ G     F+V D
Sbjct: 749 ELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGD 808

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGY-----VVKEEFCSEEEI 705
           +   ++ EI  +   L E + + GY      V  E   EE+I
Sbjct: 809 SLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKI 850



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/448 (32%), Positives = 227/448 (50%), Gaps = 43/448 (9%)

Query: 84  CGKVKALAQGKQLHA-CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           CG  K +  G++LH   + +     + VL  +L+  YA      ++  + +N   +  + 
Sbjct: 53  CGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQ 112

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHS-C 200
           WN L+S Y R+G Y + + V+  + S    + DNFT+PSV+KACG ++DV  G V+H   
Sbjct: 113 WNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMV 172

Query: 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
           I       +FV NALV MYGK G VD A ++FD M E + VSWN+MI A++  G  +++F
Sbjct: 173 IKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSF 232

Query: 261 QLFVEM-QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            L +EM  EEG+  +V+T  TI                                   L  
Sbjct: 233 DLLMEMLGEEGLLPDVVTVVTI-----------------------------------LPV 257

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+  G + +G  IHG AV+    E   V NA++ MYS+C  L  A + F     K++++W
Sbjct: 258 CAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSW 317

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVE--PNYVTIASILPLCARVANLQHGKEFHCYI 437
           N+M+S ++      E+  L +EM   G E   N VTI ++LP C     L+  KE H Y 
Sbjct: 318 NTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYS 377

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
            R     +H+ L N+ +  YA+ G +  A+ VF  +  +   ++ +LI G+   G+ R A
Sbjct: 378 FRHCF--QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKA 435

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           L L  +M  +  +PD  T+ ++L AC+H
Sbjct: 436 LHLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/533 (26%), Positives = 250/533 (46%), Gaps = 44/533 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I  CG +  +  G+ +H   I +GL  +  +   LV  Y      + A  + +  
Sbjct: 148 TFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFM 207

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG 194
                + WN +I  +  +GF  ++  +  +M     +  D  T  ++L  C    +VD G
Sbjct: 208 PETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIG 267

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             +H   +       + V+NA+V MY K G ++ A+  F K   ++ VSWNTMISA++ +
Sbjct: 268 MGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLE 327

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G   EAF L  EMQ +G E                            M+  E  + +V  
Sbjct: 328 GDVNEAFNLLQEMQIQGEE----------------------------MKANEVTILNV-- 357

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC     L+  KE+HG + R C+   E + NA I  Y++C  L  A  +F    +
Sbjct: 358 ---LPACLDKLQLRSLKELHGYSFRHCFQHVE-LSNAFILAYAKCGALNSAEKVFHGIGD 413

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K++ +WN+++ G+       ++  L  +M  SG +P++ TI+S+L  CA + +LQ+GKE 
Sbjct: 414 KTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEI 473

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H Y+LR  +  +   +  SL+  Y   GK   A+ +FD M  ++ V++ ++I+GY   G 
Sbjct: 474 HGYVLRNGLETD-FFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGL 532

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              +L LF +     I+   + +V+V  ACS    +  G++    +  +  +  +     
Sbjct: 533 PYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYV--LKALQTEDAFVG 590

Query: 554 C-MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
           C ++D+Y ++G + +++++   +      A W  ++ A  IH   G G+ A E
Sbjct: 591 CSIIDMYAKSGCIKESRKVFDGLK-DKNVASWNAIIVAHGIH---GHGKEAIE 639



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
            I  +L  C    +++ G+  H ++     +    +L   L++MYA  G   +++ VFD 
Sbjct: 45  AIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDN 104

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACS-----HS 526
           M  ++ + + +L++GY   G     +K+F ++ +    +PD+ T  +V+ AC        
Sbjct: 105 METKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRL 164

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G V+ G      M    G+   +     +V +YG+ G +++A ++   MP T   + W +
Sbjct: 165 GEVIHG------MVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVS-WNS 217

Query: 587 LLGA 590
           ++ A
Sbjct: 218 MICA 221


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 189/623 (30%), Positives = 316/623 (50%), Gaps = 81/623 (13%)

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           YA     ++A  L E+   R  + WN+++S   + G   EAL V   M +R +R D+ TY
Sbjct: 238 YAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTY 297

Query: 179 PSVLKACGEMMDVDFGRVVHS-------CIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
            S L AC ++  + +G+ +H+       CID       +V +A+V +Y K G        
Sbjct: 298 TSSLTACAKLSSLGWGKQLHAQVIRSLPCIDP------YVASAMVELYAKCG-------- 343

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
                                   +KEA ++F  +++     N ++W  + GG L+ G F
Sbjct: 344 -----------------------CFKEARRVFSSLRDR----NTVSWTVLIGGFLQYGCF 376

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
              LEL ++MR +   +D  A    +  CS+   + L +++H  +++  +     + N+L
Sbjct: 377 SESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSL 436

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSI-------------------------------ITWN 380
           I+MY++C +L++A  +F    E+ I                               ITWN
Sbjct: 437 ISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWN 496

Query: 381 SMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           +ML  Y      E+   ++  M     V P++VT  ++   CA +   + G +   + ++
Sbjct: 497 AMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVK 556

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             +  +  ++ N+++ MY++ G++ EA+ +FD +SR+D V++ ++I GY   G G+ A++
Sbjct: 557 VGLILDTSVM-NAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIE 615

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           +F++M K   KPD+++ VAVLS+CSHSGLV EG+  F+ +   + + P LEHF+CMVDL 
Sbjct: 616 IFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLL 675

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
            RAG L +AK +I +MP  PT+ +W  LL AC+ H N  + E AA+ L +    +SG Y+
Sbjct: 676 ARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYM 735

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L+A +YA  G     A+VR  MRD G++K PG +W++  N    F  +D S+ Q   I  
Sbjct: 736 LLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIRE 795

Query: 680 LLGGLTELMKDAGYVVKEEFCSE 702
            L  L E +   GYV  E   SE
Sbjct: 796 KLDELMEKIAQLGYVRTESLRSE 818



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 225/427 (52%), Gaps = 10/427 (2%)

Query: 53  LSKAFEAFTRIRITAASHD--VVLDS--FAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108
           LS++  A   + +    H+  V LDS  +   +  C K+ +L  GKQLHA  I      +
Sbjct: 269 LSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCID 328

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
           P +   +V  YA    +  A  +  +   R  + W +LI  +++ G ++E+L ++ QM++
Sbjct: 329 PYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRA 388

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDV 227
             +  D F   +++  C   MD+   R +HS  + + H  ++ + N+L+SMY K G +  
Sbjct: 389 ELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQN 448

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A  +F  M ERD VSW  M++AY+  G   +A + F  M       NVITWN + G  ++
Sbjct: 449 AESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTR----NVITWNAMLGAYIQ 504

Query: 288 TGNFKGVLELLSRMRTQETYL-DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
            G  +  L++ S M T++  + D V  V     C+ +GA KLG +I G  V+       +
Sbjct: 505 HGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTS 564

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V NA+ITMYS+C  +  A  +F   + K +++WN+M++GY+     +++  +F +M + G
Sbjct: 565 VMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKG 624

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
            +P+Y++  ++L  C+    +Q GK +   + R    +  L  ++ +V++ AR+G + EA
Sbjct: 625 AKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEA 684

Query: 467 KSVFDLM 473
           K++ D M
Sbjct: 685 KNLIDEM 691



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 185/423 (43%), Gaps = 51/423 (12%)

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           E ++  HN +++ Y K G +  A  LF +M  RD  SWNT++S Y   G + +A + FV 
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 266 MQEEGVEV-NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           M+  G  + N  T+      C   G  +  L+LL  +           T  G      V 
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLL-----------TKFGFQGDPDVA 200

Query: 325 ALKLGKEIHGSAVRGCYGEYENV-------RNALITMYSRCKDLRHAYILFKMTAEKSII 377
              +   +   AV     ++  +       RN+++  Y++   + HA  LF+   E+ ++
Sbjct: 201 TGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVV 260

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +WN M+S  +    A E+  +  +M   GV  +  T  S L  CA++++L  GK+ H  +
Sbjct: 261 SWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQV 320

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           +R     +  +  +++VE+YA+ G   EA+ VF  +  R+ V++T LI G+   G    +
Sbjct: 321 IRSLPCIDPYVA-SAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSES 379

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACS-----------HSGLVVEGQKQF----ERMTSI 542
           L+LF +M    +  D   +  ++S CS           HS  +  G  +       + S+
Sbjct: 380 LELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISM 439

Query: 543 YG----------IFPQLEH-----FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           Y           IF  +E      +  M+  Y + G + KA+E    M  T     W  +
Sbjct: 440 YAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMS-TRNVITWNAM 498

Query: 588 LGA 590
           LGA
Sbjct: 499 LGA 501



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           +LR  +   +++  N ++  YA+ G + +A+ +F  M RRD  ++ +L++GY   G    
Sbjct: 85  LLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLD 144

Query: 497 ALKLFEEMNKNQIK-PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
           A++ F  M ++    P+  T    + +C   G   E   Q   + + +G     +    +
Sbjct: 145 AMESFVSMRRSGDSLPNAFTFGCAMKSCGALGW-HEVALQLLGLLTKFGFQGDPDVATGI 203

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           VD++ R G ++ A +  +++   PT     ++L      ++ G+    A +L E+ PE
Sbjct: 204 VDMFVRCGAVDFASKQFSQIE-RPTVFCRNSMLAG--YAKSYGVDH--ALELFESMPE 256


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 290/523 (55%), Gaps = 38/523 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y + + AC +  ++D  R +H  + +   E   F+ N+L+ +Y K G V  A ++FDKM 
Sbjct: 54  YHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           ++D VSW ++I+ YA   +  EA  L   M +   + N  T+ ++               
Sbjct: 114 KKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASL--------------- 158

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
               ++    Y DS                 +G +IH  AV+  + E   V +AL+ MY+
Sbjct: 159 ----LKAAGAYADS----------------GIGGQIHALAVKCDWHEDVYVGSALLDMYA 198

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           RC  +  A  +F     K+ ++WN+++SG+      E +  +F EM R+G E  + T +S
Sbjct: 199 RCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSS 258

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           I    A +  L+ GK  H ++++         + N++++MYA+SG + +A+ VF+ +  +
Sbjct: 259 IFSGLAGIGALEQGKWVHAHMVKSRQ-KLTAFVGNTMLDMYAKSGSMIDARKVFERVLNK 317

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
           D VT+ S++  +   G G+ A+  FEEM K+ I  + +T + +L+ACSH GLV EG+  F
Sbjct: 318 DLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYF 377

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           + M   Y + P++EH+  +VDL GRAGLLN A   I KMP  PT+A+W  LL AC++H+N
Sbjct: 378 D-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKN 436

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             +G++AA+ + +  P++SG  VL+ N+YA+TG WD  A+VR  M+  GV+K P C+WV+
Sbjct: 437 AKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVE 496

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            GN    F+ +D ++ +A+EIY +   ++  ++  GYV   ++
Sbjct: 497 IGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDY 539



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 161/356 (45%), Gaps = 38/356 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
            I  C + K L   +++H    +   E +  L   L+  Y        A  + +    + 
Sbjct: 57  FITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKD 116

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  LI+ Y ++   AEA+ +   M   R + + FT+ S+LKA G   D   G  +H+
Sbjct: 117 MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHA 176

Query: 200 CIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
               C +W   ++V +AL+ MY + G++D+A  +FDK+  ++ VSWN +IS +A KG  +
Sbjct: 177 LAVKC-DWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGE 235

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
            A  +F EMQ  G E    T+++I  G                                 
Sbjct: 236 TALMVFAEMQRNGFEATHFTYSSIFSG--------------------------------- 262

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
              + +GAL+ GK +H   V+        V N ++ MY++   +  A  +F+    K ++
Sbjct: 263 --LAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLV 320

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           TWNSML+ +      +E+   F EM +SG+  N +T   IL  C+    ++ GK +
Sbjct: 321 TWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHY 376



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++   G       G Q+HA A+     ++  +   L+  YA     + A  + +  
Sbjct: 154 TFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + WN LIS + R G    AL V+ +MQ       +FTY S+      +  ++ G+
Sbjct: 214 DSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGK 273

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  + +  + + FV N ++ MY K G +  AR++F+++L +D V+WN+M++A+A  G
Sbjct: 274 WVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYG 333

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           L KEA   F EM++ G+ +N IT+  I   C   G  K
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVK 371


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 202/618 (32%), Positives = 304/618 (49%), Gaps = 67/618 (10%)

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA----------C 185
           ++R  + +N +I+ Y        A+ +++ M+    + D+FT+ SVL A          C
Sbjct: 108 DMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQC 167

Query: 186 GEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGK---------FGQVDVARRLFDKML 236
           G+M     G VV   I+        V NAL+S+Y K            +  AR+LFD+M 
Sbjct: 168 GQM----HGTVVKFGIEIFPA----VLNALLSVYVKCASSPLVSSSSLMASARKLFDEMP 219

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           +R+   W T+I+ Y   G    A ++   M E+      I WN +  G L  G F+  L 
Sbjct: 220 KRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPG----IAWNAMISGYLHHGLFEDALT 275

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN----VRNALI 352
           L  +MR     +D       + AC+  G   LGK++H   ++       +    V N LI
Sbjct: 276 LFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLI 335

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF--------------- 397
           T+Y +   +  A  +F     K IITWN++LSGY +    EE+                 
Sbjct: 336 TLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTV 395

Query: 398 ----------------LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
                           LF +M   G EPN    A  +  C+ +  L++G++ H  I+   
Sbjct: 396 MISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLG 455

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
             +  L + N+++ MYAR G V  A+++F  M   D V++ S+IA  G  G G  A++L+
Sbjct: 456 -HDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELY 514

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           E+M K  I PD  T + VLSACSH+GLV EG + F  M   YGI P  +H+A M+DL+ R
Sbjct: 515 EQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCR 574

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG  + AK +I  MP+   + +W  LL  C+ H N  +G  AAEKL +  P++ G YVL+
Sbjct: 575 AGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLL 634

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +NMYA+ G W+ +A+ R  MRD GV+K P C+W +  N    FLVDDT + +   IY  L
Sbjct: 635 SNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYL 694

Query: 682 GGLTELMKDAGYVVKEEF 699
             L   MK  GY+   ++
Sbjct: 695 EKLNLEMKKIGYIPDTKY 712



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 213/422 (50%), Gaps = 12/422 (2%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           ++N  +   L+T Y        A  +++    +  + WN +IS Y+  G + +AL ++++
Sbjct: 220 KRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRK 279

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-----DACHEWSLFVHNALVSMYG 220
           M+   ++ D  TY SV+ AC +      G+ VH+ I     +   ++ L V N L+++Y 
Sbjct: 280 MRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYW 339

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K+G+VD AR++F +M  +D ++WNT++S Y + G  +EA   F +M E+    N++TW  
Sbjct: 340 KYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEK----NLLTWTV 395

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +  G  + G  +  L+L ++M+      +  A    + ACS +GAL+ G+++H   V   
Sbjct: 396 MISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLG 455

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
           +    +V NA+ITMY+RC  +  A  +F        ++WNSM++         ++  L+ 
Sbjct: 456 HDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYE 515

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M + G+ P+  T  ++L  C+    ++ G  +   +L           +  +++++ R+
Sbjct: 516 QMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRA 575

Query: 461 GKVPEAKSVFDLMSRRDEV-TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
           GK  +AK+V D M        + +L+AG    G   + ++  E++ K  + P H     +
Sbjct: 576 GKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFK--LIPQHDGTYVL 633

Query: 520 LS 521
           LS
Sbjct: 634 LS 635



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 190/458 (41%), Gaps = 81/458 (17%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N L+ +Y K      AR+LFD++ + D ++  T+I+AY++ G  K A ++F E   +   
Sbjct: 52  NRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLD--M 109

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS----------- 321
            + + +N +  G     +    +EL   MR      D       L A +           
Sbjct: 110 RDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQ 169

Query: 322 -HVGALKLGKEIHGSAVRGCYGEY-----------------------------ENVRNAL 351
            H   +K G EI  + +      Y                             E +   L
Sbjct: 170 MHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTL 229

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           IT Y R  DL  A  +     E+  I WN+M+SGY H    E++  LFR+M   GV+ + 
Sbjct: 230 ITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDE 289

Query: 412 VTIASILPLCARVANLQHGKEFHCYILR------------------------------RA 441
            T  S++  CA       GK+ H YIL+                              R 
Sbjct: 290 STYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARK 349

Query: 442 MFNE----HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           +F E     ++ WN+L+  Y  +G++ EAKS F  M  ++ +T+T +I+G    G G  A
Sbjct: 350 IFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQA 409

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           LKLF +M  +  +P+       ++ACS  G +  G++   ++  + G    L     M+ 
Sbjct: 410 LKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHL-GHDSTLSVGNAMIT 468

Query: 558 LYGRAGLLNKAKEIITKMPYT-PTSAMWATLLGACQIH 594
           +Y R G++  A+ +   MP+  P S  W +++ A   H
Sbjct: 469 MYARCGIVEAARTMFLTMPFVDPVS--WNSMIAALGQH 504



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 3/182 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA  I  C  + AL  G+QLHA  + LG +    +   ++T YA   +   A  +    
Sbjct: 427 AFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTM 486

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG- 194
               P+ WN +I+   + G   +A+ +Y+QM    I  D  T+ +VL AC     V+ G 
Sbjct: 487 PFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGN 546

Query: 195 RVVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYAS 252
           R  +S ++         H A ++ ++ + G+   A+ + D M  E  A  W  +++   +
Sbjct: 547 RYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRT 606

Query: 253 KG 254
            G
Sbjct: 607 HG 608



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 33/234 (14%)

Query: 436 YILRRAMFNE----HLLLWNSLVEMYARSGKVPEAKSVFD--LMSRRDEVTYTSLIAGYG 489
           ++  R +F+E     ++   +L+  Y+  G +  A+ +F+   +  RD V Y ++I GY 
Sbjct: 64  FVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYS 123

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI---YG-- 544
              +G  A++LF  M     +PD  T  +VLSA   S L+   ++Q  +M      +G  
Sbjct: 124 HMNDGHSAIELFRAMRWANFQPDDFTFASVLSA---STLIFYDERQCGQMHGTVVKFGIE 180

Query: 545 IFPQLEHFACMVDLYGRAG---------LLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           IFP +     ++ +Y +           L+  A+++  +MP      +W TL+      R
Sbjct: 181 IFPAV--LNALLSVYVKCASSPLVSSSSLMASARKLFDEMP-KRNEFIWTTLITGYV--R 235

Query: 596 NTGIGEWAAEKLLETRPENSG--YYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           N  +    A ++L+T  E  G  +  +I+  Y   G ++    +   MR LGV+
Sbjct: 236 NGDLT--GAREILDTMTEQPGIAWNAMISG-YLHHGLFEDALTLFRKMRLLGVQ 286


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 196/658 (29%), Positives = 330/658 (50%), Gaps = 72/658 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  +K+L  GK++H+   +  +  +  L  KLV+FYA+         + +  
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL--KACG------- 186
             +    WN ++S Y + G + E++C++K M  + I G      S L  K C        
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 187 --------------------EMM----DVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222
                               +MM    DVD   ++   +   +  +L +  A+ S+  K 
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK- 279

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
                         ER     NT++  Y+  G    A ++F +M E     NV++W ++ 
Sbjct: 280 -----------SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER----NVVSWTSMI 324

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G  R G   G + LL +M  +   LD VA    L AC+  G+L  GK++H         
Sbjct: 325 AGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMA 384

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
               V NAL+ MY++C  +  A  +F     K II+WN+M+                   
Sbjct: 385 SNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE----------------- 427

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
               ++P+  T+A ILP CA ++ L+ GKE H YILR   ++    + N+LV++Y + G 
Sbjct: 428 ----LKPDSRTMACILPACASLSALERGKEIHGYILRNG-YSSDRHVANALVDLYVKCGV 482

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A+ +FD++  +D V++T +IAGYG+ G G  A+  F EM    I+PD V+ +++L A
Sbjct: 483 LGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYA 542

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSHSGL+ +G + F  M + + I P+LEH+ACMVDL  R G L+KA + I  +P  P + 
Sbjct: 543 CSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDAT 602

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +W  LL  C+I+ +  + E  AE++ E  PEN+GYYVL+AN+YA     +++ ++R  + 
Sbjct: 603 IWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIG 662

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLV-DDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
             G+RK PGC+W++     + F+  +++S+  +++I  LL  +   MK+ GY  K ++
Sbjct: 663 KKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKY 720



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 196/440 (44%), Gaps = 66/440 (15%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           DV L +   ++  C     L+ GK +H+ AI    E+       L+  Y+     + A  
Sbjct: 248 DVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALR 307

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           + E    R  + W  +I+ Y RDG+   A+ + +QM+   ++ D     S+L AC     
Sbjct: 308 VFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGS 367

Query: 191 VDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +D G+ VH  I A +  S LFV NAL+ MY K G ++ A  +F  M+ +D +SWNTM+  
Sbjct: 368 LDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG- 426

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
                                                         EL    RT    L 
Sbjct: 427 ----------------------------------------------ELKPDSRTMACILP 440

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           +         C+ + AL+ GKEIHG  +R  Y    +V NAL+ +Y +C  L  A +LF 
Sbjct: 441 A---------CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD 491

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
           M   K +++W  M++GY       E+   F EM  +G+EP+ V+  SIL  C+    L+ 
Sbjct: 492 MIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQ 551

Query: 430 GKEFHCYILRRAMFN--EHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIA 486
           G  F  YI++   FN    L  +  +V++ +R+G + +A K +  L    D   + +L+ 
Sbjct: 552 GWRFF-YIMKND-FNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLC 609

Query: 487 G----YGIQGEGRVALKLFE 502
           G    + I+   +VA ++FE
Sbjct: 610 GCRIYHDIELAEKVAERVFE 629


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/611 (29%), Positives = 318/611 (52%), Gaps = 40/611 (6%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+  C  +  +  G+Q+H   I  G E+N  +   L++ Y+    ++ A  +      + 
Sbjct: 16  ILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVFNGVGCKD 75

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
               N +I  Y + G+   A+ V+  + S  +  +++T+ +++  C    +V+ G+ +H 
Sbjct: 76  LRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTC----NVEEGKQLH- 130

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
                          L   YG   Q  V                N +I+ Y   G+ +EA
Sbjct: 131 --------------GLAVKYGVLLQTSVG---------------NAVITMYGKNGMVEEA 161

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++F  M ++    N+I+W  +  G  R G  +  ++    +R      DS      L  
Sbjct: 162 ARMFSVMNKK----NLISWTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDG 217

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           CS    L LG +IHG  ++  Y    N+  ALI +Y++CK+ + A  +F   + +S  ++
Sbjct: 218 CSECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASF 277

Query: 380 NSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           N++L G+   D  EE   +F    R +G++P+ V+ + +L L A  A+L  G+  H Y +
Sbjct: 278 NAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSI 337

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   F  H+ + N+L+ MYA+ G V +A   F+ MS  D +++ ++I+ Y + G+G  AL
Sbjct: 338 KTG-FAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKAL 396

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            L++EM +    PD +T++ +L AC++SGL  +G   F  M S YGI P LEH+ACMVDL
Sbjct: 397 LLYQEMEEKGFTPDEITILVILQACTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDL 456

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GRAG L++A +II + P++ ++ +W TL+  C++  +  +G+ A++ LL+  P+ +G Y
Sbjct: 457 LGRAGYLSQAMDIINRSPFSESTLLWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSY 516

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL++N+YA  G  D+ +KVRT M+DL + K  G +WV+  N+   F+   T + ++ EIY
Sbjct: 517 VLVSNIYAGEGMIDEASKVRTTMKDLKLSKEAGSSWVEIDNMVHYFVASGTDHPESIEIY 576

Query: 679 PLLGGLTELMK 689
             L  L   M+
Sbjct: 577 ARLDLLRNEMR 587



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 139/283 (49%), Gaps = 20/283 (7%)

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           V+ L ACS +G + LG++IHG  ++  + E   V  +LI+MYSR  +   A  +F     
Sbjct: 14  VVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVFNGVGC 73

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K +   N M+  Y      + +  +F  +   G++PN  T  +I+  C    N++ GK+ 
Sbjct: 74  KDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTC----NVEEGKQL 129

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H   ++  +  +   + N+++ MY ++G V EA  +F +M++++ +++T+LI+GY   G 
Sbjct: 130 HGLAVKYGVLLQ-TSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYTRNGY 188

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           G  A+  F E+    ++ D   +  +L  CS         K  +  T I+G+  +L  + 
Sbjct: 189 GEKAVDGFLELRGCGVECDSGLLATILDGCSEC-------KNLDLGTQIHGLVIKL-GYP 240

Query: 554 C-------MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           C       ++DLY +      A+ +   +    T++  A L+G
Sbjct: 241 CDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVG 283



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 4/252 (1%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           KA + F  +R      D  L   A I+  C + K L  G Q+H   I LG   +  +   
Sbjct: 191 KAVDGFLELRGCGVECDSGL--LATILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTA 248

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWN-LLISLYVRDGFYAEALCVYKQMQSRRIRG 173
           L+  YA    + +A  +    + R    +N +L+     D    + +    Q++   I+ 
Sbjct: 249 LIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKP 308

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           D+ ++  +L        +  GR +H+  I       + V NAL++MY K G V+ A + F
Sbjct: 309 DSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDAYQAF 368

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           + M   D +SWN +ISAY+  G  ++A  L+ EM+E+G   + IT   I   C  +G  +
Sbjct: 369 NSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACTYSGLSE 428

Query: 293 GVLELLSRMRTQ 304
             L L + M ++
Sbjct: 429 DGLHLFNTMESK 440



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 112/250 (44%), Gaps = 16/250 (6%)

Query: 60  FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
            +++R+     D V  SF+ ++       +L +G+ LHA +I  G   +  +   L+T Y
Sbjct: 298 LSQLRLAGIKPDSV--SFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMY 355

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYP 179
           A   +  +A     + +    + WN +IS Y   G   +AL +Y++M+ +    D  T  
Sbjct: 356 AKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITIL 415

Query: 180 SVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNA-LVSMYGKFGQVDVARRLFDKM-L 236
            +L+AC      + G  + + +++ +    L  H A +V + G+ G +  A  + ++   
Sbjct: 416 VILQACTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPF 475

Query: 237 ERDAVSWNTMISAYASKG---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
               + W T+++     G   L K A +  +++  +     V+  N  AG        +G
Sbjct: 476 SESTLLWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAG--------EG 527

Query: 294 VLELLSRMRT 303
           +++  S++RT
Sbjct: 528 MIDEASKVRT 537


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 186/579 (32%), Positives = 301/579 (51%), Gaps = 46/579 (7%)

Query: 127 NACFLVENSNIRYP---LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLK 183
           N   LV N    Y      +N LIS +V +G   + L  Y++M+   +  D +T+P ++K
Sbjct: 9   NQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTFPCLIK 68

Query: 184 ACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
              E+M+V   + +H  +                   K G            L+ D    
Sbjct: 69  GLCEVMEVFQVKKIHGLVR------------------KLG------------LDLDMYVG 98

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           ++++S+Y    L KEA +LF E+ +     +V+ WN++  G  + G F   L +   M +
Sbjct: 99  SSLVSSYLKSELMKEARELFDEIPDR----DVVLWNSMVNGYAQIGRFDEALGVCREM-S 153

Query: 304 QETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLR 362
           QE  L S  TV G L   +  G    G+ +HG  ++  +    +V NALI MY +C+ + 
Sbjct: 154 QEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVV 213

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
            A  +F+   EK I +WNS+LS        + +  LF  M   GV+ + VTI +ILP C+
Sbjct: 214 DALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITTILPACS 273

Query: 423 RVANLQHGKEFHCYILRRAMFNE-------HLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
            +A L HG+E H Y++      +       +L   N+L++MYA+ G + +A  VF  MS 
Sbjct: 274 HLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSN 333

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           RD  ++  +I GYG+ G G  AL +F +M K+ +KP+ +T V VL ACSH+G + +G K 
Sbjct: 334 RDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGIKF 393

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
              M   +G+ P ++H+ C++D+ GRAG L +A ++   MP      +W  LL ACQ++ 
Sbjct: 394 LGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVVWRALLAACQLYG 453

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  + E AA+K+ E  P + G YVL++N Y A G + ++  +R  MR   V+K PGC+W+
Sbjct: 454 NVDLAEVAAQKVFELNPAHCGNYVLMSNAYVAAGRYQEVLDIRHTMRQQDVKKTPGCSWI 513

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +  N  + F+  D ++ +A+ IYP L  L   +++ GYV
Sbjct: 514 ELKNGMNTFINGDRNHPEARLIYPELHLLAAHIREHGYV 552



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 201/473 (42%), Gaps = 98/473 (20%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           +V  + Q K++H     LGL+ +  +   LV+ Y    L   A  L +    R  + WN 
Sbjct: 72  EVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNS 131

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH------- 198
           +++ Y + G + EAL V ++M    +    FT   VL       D D GR+VH       
Sbjct: 132 MVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMG 191

Query: 199 --SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
             SC+  C        NAL+ MYGK   V  A  +F+ M E+D  SWN+++SA       
Sbjct: 192 FDSCVSVC--------NALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDH 243

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
               +LF  M  +GV+++++T  TI                                   
Sbjct: 244 DGTLRLFDRMLGDGVQLDLVTITTI----------------------------------- 268

Query: 317 LGACSHVGALKLGKEIHGSAVRGCY---GEYENVR-----NALITMYSRCKDLRHAYILF 368
           L ACSH+ AL  G+EIHG  +   +   GE EN+      NAL+ MY++C  +R A ++F
Sbjct: 269 LPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVF 328

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
              + +   +WN M+ GY       E+ ++F +M +SG++PN +T   +L  C+    + 
Sbjct: 329 YNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFIS 388

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G +F                   L EM  + G VP  +             YT +I   
Sbjct: 389 QGIKF-------------------LGEMELKHGVVPTIQH------------YTCVIDML 417

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV----VEGQKQFE 537
           G  G+   A KL   M    I+ + V   A+L+AC   G V    V  QK FE
Sbjct: 418 GRAGQLEEAYKLAVTM---PIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFE 467



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 120/255 (47%), Gaps = 20/255 (7%)

Query: 354 MYSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           MY++C  +  A ++   TA+  +++  +N+++SG+      ++    + EM ++GV P+ 
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            T   ++     V  +   K+ H  ++R+   +  + + +SLV  Y +S  + EA+ +FD
Sbjct: 61  YTFPCLIKGLCEVMEVFQVKKIHG-LVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFD 119

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +  RD V + S++ GY   G    AL +  EM++  +     T+  VLS       V  
Sbjct: 120 EIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLS-------VFA 172

Query: 532 GQKQFERMTSIYGIFPQLEHFAC------MVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           G+  F+    ++G   ++   +C      ++D+YG+   +  A EI   M      + W 
Sbjct: 173 GRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFS-WN 231

Query: 586 TLLGA---CQIHRNT 597
           ++L A   C  H  T
Sbjct: 232 SILSANELCSDHDGT 246



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 107/266 (40%), Gaps = 30/266 (11%)

Query: 60  FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK--------NPVL 111
           F R+       D+V  +   I+  C  + AL  G+++H   I  G  K        N   
Sbjct: 250 FDRMLGDGVQLDLV--TITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQT 307

Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
           +  L+  YA      +A  +  N + R    WN++I  Y   G+  EAL ++  M    +
Sbjct: 308 INALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGL 367

Query: 172 RGDNFTYPSVLKACGEMMDVDFG-------RVVHSCIDACHEWSLFVHNALVSMYGKFGQ 224
           + +  T+  VL AC     +  G        + H  +     ++      ++ M G+ GQ
Sbjct: 368 KPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYT-----CVIDMLGRAGQ 422

Query: 225 VDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           ++ A +L   M ++ + V W  +++A   Y +  L + A Q   E+        V+  N 
Sbjct: 423 LEEAYKLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMSNA 482

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQET 306
                   G ++ VL++   MR Q+ 
Sbjct: 483 YVA----AGRYQEVLDIRHTMRQQDV 504


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 320/622 (51%), Gaps = 45/622 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++        +  G Q+HA  +  G E    +   L+  Y    +  +A  + ++ 
Sbjct: 207 TFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSM 266

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R  + WN++I  Y   GFY E   ++ +M+   ++     + + LK C +  +++F +
Sbjct: 267 VVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTK 326

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   +   +E++  +  AL+  Y K   VD                            
Sbjct: 327 QLHCGVVKNGYEFAQDIRTALMVTYSKCSSVD---------------------------- 358

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD--SVA 312
              EAF+LF  M +     NV+TW  + GG ++  N K  ++L  +M  +    +  + +
Sbjct: 359 ---EAFKLF-SMADAAH--NVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYS 412

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
           TV+     S      L  ++H   ++  Y +  +V  AL+  Y +  ++  +  +F    
Sbjct: 413 TVLAGKPSS------LLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIP 466

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR-VANLQHGK 431
            K I+ W++ML+G      +E++  +F ++ + GV+PN  T +S++  C+   A ++HGK
Sbjct: 467 AKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGK 526

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H   ++    N  L + ++L+ MY++ G +  A+ VF     RD V++ S+I GYG  
Sbjct: 527 QIHATAVKSGKSNA-LCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQH 585

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G+ + AL++F+ M    +  D VT + VL+AC+H+GLV EG+K F  M   Y I  + EH
Sbjct: 586 GDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEH 645

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           ++CMVDLY RAG+ +KA +II  MP+  +  +W TLL AC++HRN  +G+ AAEKL+  +
Sbjct: 646 YSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQ 705

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P ++  YVL++N++A  G W++ A VR  M +  V+K  GC+W++  N    FL  D S+
Sbjct: 706 PNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSH 765

Query: 672 VQAQEIYPLLGGLTELMKDAGY 693
             +  +Y  L  L+  +KD GY
Sbjct: 766 PFSDLVYAKLEELSIKLKDMGY 787



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/533 (25%), Positives = 253/533 (47%), Gaps = 44/533 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L DF+   +  +A   F  +  +    D +  S A  +  CG +     G+Q+H  ++  
Sbjct: 76  LFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCA--LKVCGVLFDQVVGRQVHCQSLKS 133

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G  ++  +   LV  Y     + +   + +   I+  + W  L+S Y R+G   E + + 
Sbjct: 134 GFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLI 193

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKF 222
            QMQ   +  + FT+ +VL A  +   ++ G  VH+ I     E++ FV NAL+ MY K 
Sbjct: 194 NQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKS 253

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V  A  +FD M+ RD+V+WN MI  YA+ G + E FQ+F  M+  GV+++   + T  
Sbjct: 254 EMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCT-- 311

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                                             L  CS    L   K++H   V+  Y 
Sbjct: 312 ---------------------------------ALKLCSQQRELNFTKQLHCGVVKNGYE 338

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMT-AEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
             +++R AL+  YS+C  +  A+ LF M  A  +++TW +M+ G+   +  +++  LF +
Sbjct: 339 FAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQ 398

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M R GV PN+ T +++  L  + ++L    + H  I+ +A + +   +  +L++ Y ++G
Sbjct: 399 MSREGVRPNHFTYSTV--LAGKPSSLL--SQLHAQII-KAYYEKVPSVATALLDAYVKTG 453

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            V E+  VF  +  +D V +++++ G     +   A+++F ++ K  +KP+  T  +V++
Sbjct: 454 NVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVIN 513

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           ACS S   VE  KQ        G    L   + ++ +Y + G +  A+++ T+
Sbjct: 514 ACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTR 566



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 196/452 (43%), Gaps = 43/452 (9%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCI 201
           +N L+  + R+    EAL ++K + S  +  D  T    LK CG + D   GR VH   +
Sbjct: 72  YNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSL 131

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            +     + V  +LV MY K    +  R +FD+M                          
Sbjct: 132 KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEM-------------------------- 165

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                   G++ NV++W ++  G  R G    V+ L+++M+ +    +       LGA +
Sbjct: 166 --------GIK-NVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALA 216

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
               ++ G ++H   V+  +     V NALI MY + + +  A  +F     +  +TWN 
Sbjct: 217 DESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNI 276

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M+ GY  +    E   +F  M  +GV+ +     + L LC++   L   K+ HC +++  
Sbjct: 277 MIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNG 336

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGEGRVALKL 500
            +     +  +L+  Y++   V EA  +F +  +  + VT+T++I G+      + A+ L
Sbjct: 337 -YEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDL 395

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F +M++  ++P+H T   VL+    S L    Q   + + + Y   P +     ++D Y 
Sbjct: 396 FCQMSREGVRPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSVA--TALLDAYV 450

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           + G + ++  +   +P     A  A L G  Q
Sbjct: 451 KTGNVVESARVFYSIPAKDIVAWSAMLTGLAQ 482



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 187/462 (40%), Gaps = 92/462 (19%)

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A +LFD+   +D   +N ++  ++     +EA  LF ++   G+ V+ +T +     C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC-- 114

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                GVL             D V                +G+++H  +++  + E  +V
Sbjct: 115 -----GVL------------FDQV----------------VGRQVHCQSLKSGFLEDVSV 141

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
             +L+ MY + +D      +F     K++++W S+LSGY      +E   L  +M   GV
Sbjct: 142 GTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGV 201

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            PN  T A++L   A  + ++ G + H  I++   F     + N+L+ MY +S  V +A+
Sbjct: 202 NPNGFTFATVLGALADESIIEGGVQVHAMIVKNG-FEFTTFVCNALICMYLKSEMVGDAE 260

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS--- 524
           +VFD M  RD VT+  +I GY   G      ++F  M    +K         L  CS   
Sbjct: 261 AVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQR 320

Query: 525 --------HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
                   H G+V  G +           F Q    A MV  Y +   +++A ++ +   
Sbjct: 321 ELNFTKQLHCGVVKNGYE-----------FAQDIRTALMV-TYSKCSSVDEAFKLFSMAD 368

Query: 577 YTPTSAMWATLLGA--------------CQIHRNTGI--GEWAAEKLLETRPENSGYYVL 620
                  W  ++G               CQ+ R  G+    +    +L  +P +     L
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSRE-GVRPNHFTYSTVLAGKPSS-----L 422

Query: 621 IANMYAA--TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           ++ ++A      ++K+  V T + D         A+V  GNV
Sbjct: 423 LSQLHAQIIKAYYEKVPSVATALLD---------AYVKTGNV 455



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 20/251 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           F    N  KA + F ++    +   V  + F +     GK  +L    QLHA  I    E
Sbjct: 383 FVQNNNNKKAVDLFCQM----SREGVRPNHFTYSTVLAGKPSSLLS--QLHAQIIKAYYE 436

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLLISLYVRDGFYAEAL 160
           K P +   L+  Y           +VE++ + Y +P      W+ +++   +     +A+
Sbjct: 437 KVPSVATALLDAYV------KTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAM 490

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGE-MMDVDFGRVVH-SCIDACHEWSLFVHNALVSM 218
            V+ Q+    ++ + +T+ SV+ AC      V+ G+ +H + + +    +L V +AL++M
Sbjct: 491 EVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTM 550

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           Y K G ++ A ++F +  ERD VSWN+MI+ Y   G  K+A ++F  MQ +G+ ++ +T+
Sbjct: 551 YSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTF 610

Query: 279 NTIAGGCLRTG 289
             +   C   G
Sbjct: 611 IGVLTACTHAG 621



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
           R+A+ LF  T  K I  +N +L  ++  +   E+  LF+++  SG+  + +T++  L +C
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
             + +   G++ HC  L+   F E + +  SLV+MY ++    + + +FD M  ++ V++
Sbjct: 115 GVLFDQVVGRQVHCQSLKSG-FLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSW 173

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
           TSL++GY   G     + L  +M    + P+  T   VL A +    ++EG  Q   M  
Sbjct: 174 TSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADES-IIEGGVQVHAMIV 232

Query: 542 IYGIFPQLEHFAC--MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             G   +   F C  ++ +Y ++ ++  A+ +   M     S  W  ++G 
Sbjct: 233 KNGF--EFTTFVCNALICMYLKSEMVGDAEAVFDSM-VVRDSVTWNIMIGG 280


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 192/613 (31%), Positives = 312/613 (50%), Gaps = 40/613 (6%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           AGR   + A     R R   A  DVVL S A  +    +      G++LH  A+  G   
Sbjct: 99  AGRHADALALHRGMRRRCPEAHDDVVLLSLA--LKASVRSADFRYGRRLHCNAVKAG-GA 155

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           +  ++  LV  YA      NA  + +    R  + W  ++S  +++GF  E L ++ +M+
Sbjct: 156 DGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMR 215

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVD 226
             R+    +T  SVL AC  +  +  GR VH S I     ++ F+  A++ MY K G+V+
Sbjct: 216 EERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVE 275

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            ARRLFD++                        F            V+++ W T+  G  
Sbjct: 276 DARRLFDEL-----------------------GF------------VDLVLWTTMIVGYT 300

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
           + G+    L L S  +      +SV     L A + +  L LG+ IH  +V+    E + 
Sbjct: 301 QNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDV 360

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V NAL+ MY++CK L  A  +F   + K ++TWNS+++GY   D   E+  LF +M   G
Sbjct: 361 VMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQG 420

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
             P+ ++I + L  C  + +L  GK FH Y ++RA F  ++ +  +L+ +Y +   +P A
Sbjct: 421 SSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRA-FLSNVYVNTALLNLYNKCADLPSA 479

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + VF  MS R+ VT+ ++I GYG+QG+   ++ L  +M K+ I+P+ V   ++LS CSH+
Sbjct: 480 QRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHT 539

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G+V  G+  F+ M   + I P ++H+ACMVD+  RAG L +A E I KMP     ++W  
Sbjct: 540 GMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGA 599

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
            L  C++H     GE A  +++   P+   +YVL++N+Y + G WDK   +R  M++ G+
Sbjct: 600 FLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKSLAIRRLMQERGL 659

Query: 647 RKIPGCAWVDAGN 659
            K+PGC+ V   N
Sbjct: 660 VKLPGCSSVGLEN 672



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 231/499 (46%), Gaps = 40/499 (8%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           + LHA  +A GL +      KL++ YA+     +A  +++ +    P  + + +  +   
Sbjct: 40  RALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDPYTYRVALGWHAAA 99

Query: 154 GFYAEALCVYKQMQSR--RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV 211
           G +A+AL +++ M+ R      D       LKA     D  +GR +H           FV
Sbjct: 100 GRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRLHCNAVKAGGADGFV 159

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N LV MY K G ++ AR++FD++L R+ VSW +M+S     G  +E   LF EM+EE  
Sbjct: 160 MNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREE-- 217

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
                                       R+   E  + SV     L AC+ +G+L  G+ 
Sbjct: 218 ----------------------------RVLPSEYTMASV-----LMACTMLGSLHQGRW 244

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +HGS ++        +  A++ MY +C ++  A  LF       ++ W +M+ GYT    
Sbjct: 245 VHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGS 304

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             ++  LF +     + PN VTIA++L   A++ NL  G+  H   ++  +  E+ ++ N
Sbjct: 305 PLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVI-ENDVVMN 363

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +LV+MYA+   + EA  +F  +S +D VT+ SLIAGY     G  AL LF +M      P
Sbjct: 364 ALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSP 423

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D +++V  LSAC   G ++ G K F            +     +++LY +   L  A+ +
Sbjct: 424 DAISIVNALSACVCLGDLLIG-KCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRV 482

Query: 572 ITKMPYTPTSAMWATLLGA 590
            ++M     S  W  ++G 
Sbjct: 483 FSEMS-ERNSVTWGAMIGG 500


>gi|297827241|ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327342|gb|EFH57762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 669

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 192/666 (28%), Positives = 317/666 (47%), Gaps = 78/666 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++ H+I    + +      QLHA  +   +  +  L  KL++FY   + ++ A  + +  
Sbjct: 24  AYGHLIQHFTRHRLPLHALQLHARIVVFSIAPDNFLASKLISFYTRQNRFHQALHVFDEI 83

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQ------MQSRRIRGDNFTYPSVLKA---CG 186
            +R    +N L+  Y     Y +A  ++          S   R D+ +   VLKA   C 
Sbjct: 84  TVRNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSGAARPDSISISCVLKALSGCD 143

Query: 187 EMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
           +       R VH   I    +  +FV N L++ Y K   ++ AR++FD+M +RD      
Sbjct: 144 DFWLGSLARQVHGFVIRGGSDSDVFVGNGLITYYTKCDNIESARKVFDEMSDRD------ 197

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
                                        V++WN++  G  ++G+F+   +L   M    
Sbjct: 198 -----------------------------VVSWNSMISGYSQSGSFEDCKKLYKAMLGCS 228

Query: 306 TYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
            +  +  TVI  L AC     L  G E+H   +        ++ NA+I  Y++C  L +A
Sbjct: 229 DFKPNEVTVISVLQACGQSSDLVFGMEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYA 288

Query: 365 YILFKMTAEKSIIT-------------------------------WNSMLSGYTHLDCAE 393
             LF   +EK  +T                               WN+++SG    +  E
Sbjct: 289 RALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAVISGLMQNNHHE 348

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E    FREM R G  PN VT++S+LP     +NL+ GKE H + +R    N ++ +  S+
Sbjct: 349 EVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGSDN-NIYVTTSI 407

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++ YA+ G +  A+ VFD    R  + +T++I  Y + G+   A  LF++M     KPD+
Sbjct: 408 IDNYAKLGFLLGAQRVFDNCKDRSLIVWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDN 467

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           VT+ AVLSA +HSG   + Q  F+ M + Y I P +EH+ACMV +  RAG L+ A E I+
Sbjct: 468 VTLTAVLSAFAHSGDSDKAQHIFDSMLTKYNIEPGVEHYACMVSVLSRAGKLSNAMEFIS 527

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
           KMP  P + +W  LL    +  +  I  +A ++L E  PEN+G Y ++AN+Y   G W++
Sbjct: 528 KMPIEPIAKVWGALLNGASVLGDVEIARFACDRLFEMEPENTGNYTIMANLYTQAGRWEE 587

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
              VR  M+ +G++KIPG +W++       F+  D+S  +++E+Y ++ GL E M D  Y
Sbjct: 588 AEVVRDKMKRIGLKKIPGTSWIETNKGLRSFIAKDSSCERSKEMYDIIEGLVESMSDKEY 647

Query: 694 VVKEEF 699
           ++K+E 
Sbjct: 648 IMKQEL 653


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 186/614 (30%), Positives = 325/614 (52%), Gaps = 24/614 (3%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE-ALCVYKQMQSRRIRG 173
           L+T Y   S  ++A  L +    +    W +LIS + R    +E    ++++MQ+     
Sbjct: 73  LLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACP 132

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           + +T  SVLK C    ++ FG+ +H+ I        + + N+++ +Y K  + + A   F
Sbjct: 133 NQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFF 192

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           + M+E+D VSWN MI AY  +G  +++ ++F     +    +V++WNTI  G ++ G  +
Sbjct: 193 ELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNK----DVVSWNTIIDGLIQCGYER 248

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
             LE L  M    T    V   I L   S +  +++G+++HG  +         +R++L+
Sbjct: 249 LALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLV 308

Query: 353 TMYSRCKDLRHAYILFK----------------MTAEKSIITWNSMLSGYTHLDCAEESA 396
            MY +C  +  A  + K                   +  +++W+SM+SGY      E+  
Sbjct: 309 EMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGM 368

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
             FR M    +  +  T+A+I+  CA    L+ GK+ H YI +  +  +   + +SL++M
Sbjct: 369 KTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRID-AYVGSSLIDM 427

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y++SG + +A  +F+ +   + V +TS+I+G  + G+G+ A+ LFE M    I P+ VT 
Sbjct: 428 YSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTF 487

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           V VL+ACSH GL+ EG + F  M   Y I P++EH+  MV+LYGRAG L +AK  I +  
Sbjct: 488 VGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENS 547

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
            +  +++W + L +C++H+N  +G+  +E LL++ P +   Y+L++NM ++   WD+ A 
Sbjct: 548 ISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAI 607

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVK 696
           VR+ M   GV+K PG +WV   +    F V D S+ Q +EIY  L  L   +K+ GY + 
Sbjct: 608 VRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLD 667

Query: 697 EEFCSEEEIVEEIG 710
            +    +++ EE G
Sbjct: 668 AKLVM-QDVEEEQG 680



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 187/430 (43%), Gaps = 86/430 (20%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA-SKGLWKEAFQLFVEMQEEGV 271
           N L+++Y K   +D A +LFD++  ++  +W  +IS +A + G  +  F LF EMQ +G 
Sbjct: 71  NYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGA 130

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             N  T +++   C R  N                                   ++ GK 
Sbjct: 131 CPNQYTLSSVLKCCSRENN-----------------------------------IQFGKG 155

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IH   +R   G    + N+++ +Y +CK+  +A   F++  EK +++WN M+  Y     
Sbjct: 156 IHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGD 215

Query: 392 AEESAFLFRE-------------------------------MFRSGVEPNYVTIASILPL 420
            E+S  +FR                                M   G E + VT +  L L
Sbjct: 216 VEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALIL 275

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV----------- 469
            + ++ ++ G++ H  +L   + N    + +SLVEMY + G++ +A ++           
Sbjct: 276 VSSLSLVEVGRQLHGRVLTFGL-NSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRK 334

Query: 470 --FDLMSRRDE---VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
             F +  +  +   V+++S+++GY   G+    +K F  M    I  D  T+  ++SAC+
Sbjct: 335 GNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACA 394

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           ++G ++E  KQ        G+       + ++D+Y ++G L+ A  I  ++   P   +W
Sbjct: 395 NAG-ILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIK-EPNVVLW 452

Query: 585 ATLLGACQIH 594
            +++  C +H
Sbjct: 453 TSMISGCALH 462



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 187/413 (45%), Gaps = 27/413 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + + ++ CC +   +  GK +HA  +  G+  + VL   ++  Y     +  A    E  
Sbjct: 136 TLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELM 195

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD--F 193
             +  + WN++I  Y+R+G   ++L +++   ++ +   N     +++   E + ++  +
Sbjct: 196 IEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLY 255

Query: 194 GRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM----LERDAVSWNTMISA 249
             V H       E+S    +  + +      V+V R+L  ++    L  D    ++++  
Sbjct: 256 CMVAHGT-----EFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEM 310

Query: 250 YASKGLWKEAFQL-------FVEMQEEGV-----EVNVITWNTIAGGCLRTGNFKGVLEL 297
           Y   G   +A  +       F+     GV     +  +++W+++  G +  G ++  ++ 
Sbjct: 311 YGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKT 370

Query: 298 LSRMRTQETYLD--SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
              M  +   +D  +VAT+I   AC++ G L+ GK+IH    +        V ++LI MY
Sbjct: 371 FRSMVCELIVVDIRTVATII--SACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMY 428

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           S+   L  A ++F+   E +++ W SM+SG       +E+  LF  M   G+ PN VT  
Sbjct: 429 SKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFV 488

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
            +L  C+ V  ++ G  +   +      N  +  + S+V +Y R+G + EAK+
Sbjct: 489 GVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKN 541



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 36/293 (12%)

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L + + +G+    + +HG   +    +  N  N L+T+Y +  +L HA+ LF     K+ 
Sbjct: 39  LHSTTSIGSPPSLRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNT 98

Query: 377 ITWNSMLSGYTHLDCAEESAF-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
            TW  ++SG+     + E  F LFREM   G  PN  T++S+L  C+R  N+Q GK  H 
Sbjct: 99  QTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHA 158

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           +ILR  +  + ++L NS++++Y +  +   A+S F+LM  +D V++  +I  Y  +G+  
Sbjct: 159 WILRNGVGGD-VVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVE 217

Query: 496 VALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGL-------------------------- 528
            +L++F    NK+ +  +  T++  L  C +  L                          
Sbjct: 218 KSLEMFRNFPNKDVVSWN--TIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALIL 275

Query: 529 -----VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
                +VE  +Q       +G+       + +V++YG+ G ++KA  I+  +P
Sbjct: 276 VSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVP 328



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 3/181 (1%)

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           V + + A II  C     L  GKQ+HA    +GL  +  +   L+  Y+     ++A  +
Sbjct: 381 VDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMI 440

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            E       + W  +IS     G   EA+ +++ M +  I  +  T+  VL AC  +  +
Sbjct: 441 FEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLI 500

Query: 192 DFG-RVVHSCIDACHEWSLFVH-NALVSMYGKFGQVDVARR-LFDKMLERDAVSWNTMIS 248
           + G R      D  H      H  ++V++YG+ G +  A+  +F+  +      W + +S
Sbjct: 501 EEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLS 560

Query: 249 A 249
           +
Sbjct: 561 S 561


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 190/635 (29%), Positives = 320/635 (50%), Gaps = 79/635 (12%)

Query: 143  WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
            WN  +   V      E+L ++++M+      +NFT+P V KAC  +  + +  +VH+ + 
Sbjct: 616  WNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHLI 675

Query: 203  ACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                WS +FV  A V M+ K   +D A ++F++M  RDA +WN M+S +   G   + F 
Sbjct: 676  KSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFS 735

Query: 262  LFVEMQEE-----------------------------------GVEVNVI---TWNTIAG 283
            LF EM+ +                                   GV++      TW +  G
Sbjct: 736  LFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYG 795

Query: 284  GCLRTGNFKGVLELLSR-----------------------------MRTQETYLDSVATV 314
             C    + K V E + R                             +  ++ +   ++T 
Sbjct: 796  KCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTF 855

Query: 315  IGLGA-CSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            I L A C +   L  G+ IH  A+  G   + E + N  I+MYS+  D   A +LF +  
Sbjct: 856  INLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAI-NTFISMYSKSGDSCSARLLFDIMP 914

Query: 373  EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
             ++ ++W  M+SGY      +E+  LF  M ++GV P+ VT+ S++  C +  +L+ GK 
Sbjct: 915  SRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIGK- 973

Query: 433  FHCYILRRA-MF---NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
               +I  RA M+    +++++ N+L++MY++ G + EA+ +FD  S +  VT+T++IAGY
Sbjct: 974  ---WIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSEKTMVTWTTMIAGY 1030

Query: 489  GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
             + G    A++LF +M     KP+H+T +AVL AC+HSG + +G + F  M  +Y I P 
Sbjct: 1031 ALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPG 1090

Query: 549  LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
            L+H++CMVDL GR G L++A E+I  M   P + +W  LL AC+IHRN  I E AA+ L 
Sbjct: 1091 LDHYSCMVDLLGRKGKLDEALELIHNMSAKPDAGIWGALLSACKIHRNVKIAEQAADSLF 1150

Query: 609  ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
               P+ +  YV ++N+YAA G WD  A++R+ M+   ++K PG + +        F V +
Sbjct: 1151 NLEPQMAAPYVEMSNIYAAAGMWDGFARIRSMMKLWNIKKYPGESVIQVNGKNHTFTVGE 1210

Query: 669  TSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
              +++ + IY  L GL+   +D   ++ ++   E+
Sbjct: 1211 RGHMENEAIYSTLNGLSLFARDEKQILHKDVYKEQ 1245



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 228/538 (42%), Gaps = 81/538 (15%)

Query: 44   LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
            L  F   G+  K F  F  +R+     D V  +   +I      K+L   K +HA  I L
Sbjct: 721  LSGFCQSGHTDKVFSLFREMRLDEIPPDSV--TVMTLIQSASFEKSLKLLKVMHAFGIRL 778

Query: 104  GLEKNPVLVPKLVTFYASFSLYNNACFLVE--NSNIRYPLPWNLLISLYVRDGFYAEALC 161
            G++    +    ++ Y      ++A  + E  +   R  + WN +   +   G   +A  
Sbjct: 779  GVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFG 838

Query: 162  VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYG 220
             Y+ M     + D  T+ ++  +C     +  GR++HS  I    +  +   N  +SMY 
Sbjct: 839  HYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYS 898

Query: 221  KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
            K G    AR LFD M  R  VSW  MIS YA KG   EA  LF  M + GV  +++T  +
Sbjct: 899  KSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLS 958

Query: 281  IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA-VRG 339
            +  GC   G F                                G+L++GK I G A + G
Sbjct: 959  LISGC---GKF--------------------------------GSLEIGKWIDGRADMYG 983

Query: 340  CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            C  +   V NALI MYS+C  +  A  +F  T+EK+++TW +M++GY       E+  LF
Sbjct: 984  CKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLEAMELF 1043

Query: 400  REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
             +M     +PN++T  ++L  CA   +L+ G E+   + +    +  L  ++ +V++  R
Sbjct: 1044 SKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGR 1103

Query: 460  SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
             GK+ E                               AL+L   M+    KPD     A+
Sbjct: 1104 KGKLDE-------------------------------ALELIHNMS---AKPDAGIWGAL 1129

Query: 520  LSACS-HSGLVVEGQKQFERMTSIYGIFPQL-EHFACMVDLYGRAGLLNKAKEIITKM 575
            LSAC  H  + +  Q       S++ + PQ+   +  M ++Y  AG+ +    I + M
Sbjct: 1130 LSACKIHRNVKIAEQA----ADSLFNLEPQMAAPYVEMSNIYAAAGMWDGFARIRSMM 1183



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 10/199 (5%)

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           S+  WN  +    + +   ES  LFREM R G EPN  T   +   CAR+A + + +  H
Sbjct: 612 SVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVH 671

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            ++++   +++ + +  + V+M+ +   +  A  VF+ M  RD  T+ ++++G+   G  
Sbjct: 672 THLIKSPFWSD-VFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHT 730

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
                LF EM  ++I PD VT++ ++ + S      E   +  ++   +GI   ++  A 
Sbjct: 731 DKVFSLFREMRLDEIPPDSVTVMTLIQSAS-----FEKSLKLLKVMHAFGIRLGVDLQAT 785

Query: 555 M----VDLYGRAGLLNKAK 569
           +    +  YG+ G L+ AK
Sbjct: 786 VSNTWISAYGKCGDLDSAK 804


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/567 (31%), Positives = 302/567 (53%), Gaps = 39/567 (6%)

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID--ACHEWSLFVHNAL 215
           EA+   + +  R +R D+ T  S+L+ C +   +  G+ VH  +          F+ N L
Sbjct: 42  EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHL 101

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           ++MY K G+   AR++FDKM  R+  SWN M+S YA  G+ K A +LF +M E+    +V
Sbjct: 102 INMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK----DV 157

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG- 334
           ++WNT+     + G +   L   S  R      +  +    L  C  +  + L +++HG 
Sbjct: 158 VSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQ 217

Query: 335 -------------SAVRGCY---GEYENVR--------------NALITMYSRCKDLRHA 364
                        S+V   Y   G   + R                +++ Y++  D++ A
Sbjct: 218 ILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSA 277

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             LF    EK+ ++W +++SGY       ++  LF +M    V P+  T +S L  CA +
Sbjct: 278 NELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASI 337

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTS 483
           A+L+HGK+ H Y+LR   F  + ++ ++L++MY++ G +   + VFDLM  + D V + +
Sbjct: 338 ASLKHGKQIHAYLLR-INFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNT 396

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +I+     G G  A+++ ++M ++  KPD +T V +L+ACSHSGLV +G   FE M+  Y
Sbjct: 397 IISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDY 456

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           GI P  EH+AC++DL GRAG   +  + + KMPY P   +W  LLG C+IH +  +G  A
Sbjct: 457 GIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKA 516

Query: 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSP 663
           AE+L+E  P++S  YVL++++YA  G W+ + KVR  M +  V+K    +W++  N    
Sbjct: 517 AERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHS 576

Query: 664 FLVDDTSNVQAQEIYPLLGGLTELMKD 690
           F V D+S+   ++IY +L  L   M++
Sbjct: 577 FSVSDSSHPLKEQIYSVLEQLAGQMEE 603



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 33/259 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           SFA ++  C K+K +   +Q+H   +  G   N VL   ++  Y    L  +A  L +  
Sbjct: 194 SFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEM 253

Query: 136 NIR-------------------------------YPLPWNLLISLYVRDGFYAEALCVYK 164
           + R                                P+ W  LIS Y R+G   +AL ++ 
Sbjct: 254 SARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFT 313

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M    +R D FT+ S L AC  +  +  G+ +H+  +    + +  V +AL+ MY K G
Sbjct: 314 KMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCG 373

Query: 224 QVDVARRLFDKMLER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            + + R++FD M  + D V WNT+ISA A  G  +EA Q+  +M   G + + IT+  I 
Sbjct: 374 SLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVIL 433

Query: 283 GGCLRTGNFKGVLELLSRM 301
             C  +G  +  L     M
Sbjct: 434 NACSHSGLVQQGLNFFESM 452



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 112/283 (39%), Gaps = 59/283 (20%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G   KA E FT++ +     D    +F+  +  C  + +L  GKQ+HA  + +  +
Sbjct: 299 YARNGMGHKALELFTKMMLFHVRPDQF--TFSSCLCACASIASLKHGKQIHAYLLRINFQ 356

Query: 107 KNPVLVPKLVTFYAS----------FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
            N ++V  L+  Y+           F L  N   +V          WN +IS   + G  
Sbjct: 357 PNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVV---------LWNTIISALAQHGCG 407

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACG------------EMMDVDFGRVV----HSC 200
            EA+ +   M     + D  T+  +L AC             E M  D+G V     ++C
Sbjct: 408 EEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYAC 467

Query: 201 -IDACHEWSLF-----------------VHNALVSMYGKFGQVDVARRLFDKMLE---RD 239
            ID       F                 V NAL+ +    G +++ R+  ++++E   + 
Sbjct: 468 LIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQS 527

Query: 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV-NVITWNTI 281
           + ++  + S YA  G W+   ++   M E  V+    I+W  I
Sbjct: 528 STAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEI 570


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 311/615 (50%), Gaps = 59/615 (9%)

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           +IR  + +N +I+ +        AL ++ QM+      D FT+ SVL A   + D +   
Sbjct: 91  SIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHC 150

Query: 196 VVHSCIDACHEWSLF----VHNALVSMYGKFGQ---------VDVARRLFDKML--ERDA 240
               C     +W       V NAL+S Y              +  AR+LFD+     RD 
Sbjct: 151 QQLHC--EVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDE 208

Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV-ITWNTIAGGCLRTGNFKGVLELLS 299
            +W T+I+ Y        A +L      EG+  ++ + WN +  G +  G ++   +LL 
Sbjct: 209 PAWTTIIAGYVRNDDLVAARELL-----EGMTDHIAVAWNAMISGYVHRGFYEEAFDLLR 263

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY---GEYE-NVRNALITMY 355
           RM +    LD       + A S+ G   +G+++H   +R      G +  +V NALIT+Y
Sbjct: 264 RMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLY 323

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM-FRS--------- 405
           +RC  L  A  +F     K +++WN++LSG  +    EE+  +FREM  RS         
Sbjct: 324 TRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMIS 383

Query: 406 ---------------------GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
                                G+EP     A  +  C+ + +L +G++ H  I++    +
Sbjct: 384 GLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLG-HD 442

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             L + N+L+ MY+R G V  A +VF  M   D V++ ++IA     G G  A++L+E+M
Sbjct: 443 SSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKM 502

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            K  I PD +T + +LSACSH+GLV EG+  F+ M   YGI P+ +H++ ++DL  RAG+
Sbjct: 503 LKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGM 562

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
            ++AK +   MP+ P + +W  LL  C IH N  +G  AA++LLE  P+  G Y+ ++NM
Sbjct: 563 FSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNM 622

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YAA G WD++A+VR  MR+ GV+K PGC+W++  N+   FLVDD  + +   +Y  L  L
Sbjct: 623 YAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQL 682

Query: 685 TELMKDAGYVVKEEF 699
              M+  GYV   +F
Sbjct: 683 VHEMRKLGYVPDTKF 697



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 191/380 (50%), Gaps = 20/380 (5%)

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
           L+E       + WN +IS YV  GFY EA  + ++M S  I+ D +TY SV+ A      
Sbjct: 230 LLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGL 289

Query: 191 VDFGRVVH-----SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
            + GR VH     + +     + L V+NAL+++Y + G++  ARR+FDKM  +D VSWN 
Sbjct: 290 FNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNA 349

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           ++S   +    +EA  +F EM       +++TW  +  G  + G  +  L+L ++M+ + 
Sbjct: 350 ILSGCVNARRIEEANSIFREMPVR----SLLTWTVMISGLAQNGFGEEGLKLFNQMKLEG 405

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
                 A    + +CS +G+L  G+++H   ++  +    +V NALITMYSRC  +  A 
Sbjct: 406 LEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAAD 465

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            +F        ++WN+M++         ++  L+ +M +  + P+ +T  +IL  C+   
Sbjct: 466 TVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAG 525

Query: 426 NLQHGKEFH-----CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEV 479
            ++ G+ +      CY +      +H   ++ L+++  R+G   EAK+V + M       
Sbjct: 526 LVKEGRHYFDTMRVCYGITPE--EDH---YSRLIDLLCRAGMFSEAKNVTESMPFEPGAP 580

Query: 480 TYTSLIAGYGIQGEGRVALK 499
            + +L+AG  I G   + ++
Sbjct: 581 IWEALLAGCWIHGNMELGIQ 600



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 184/429 (42%), Gaps = 56/429 (13%)

Query: 215 LVSMYGKFGQVDVARRLFD--KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           ++S Y   G + +A +LF+   M  RD VS+N MI+A++       A QLFV+M+  G  
Sbjct: 68  MLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFV 127

Query: 273 VNVITWNTIAGGC------------LRTGNFK-GVLELLSRMRTQETYLDSVATVIGLGA 319
            +  T++++ G              L    FK G L + S +    +   S A+   + +
Sbjct: 128 PDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNS 187

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C  + A    +++   A  G     E     +I  Y R  DL  A  L +   +   + W
Sbjct: 188 CVLMAA---ARKLFDEAPPG--RRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAW 242

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+M+SGY H    EE+  L R M   G++ +  T  S++   +       G++ H Y+LR
Sbjct: 243 NAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLR 302

Query: 440 RAMF-NEHLLLW--NSLVEMYARSGKVPEAKSVFDLMSRRDEV----------------- 479
             +  + H +L   N+L+ +Y R GK+ EA+ VFD M  +D V                 
Sbjct: 303 TVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEE 362

Query: 480 --------------TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
                         T+T +I+G    G G   LKLF +M    ++P        +++CS 
Sbjct: 363 ANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSV 422

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
            G +  GQ+   ++  + G    L     ++ +Y R GL+  A  +   MPY   S  W 
Sbjct: 423 LGSLDNGQQLHSQIIQL-GHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYV-DSVSWN 480

Query: 586 TLLGACQIH 594
            ++ A   H
Sbjct: 481 AMIAALAQH 489



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 153/385 (39%), Gaps = 85/385 (22%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAI 101
           +  +  RG   +AF+   R+     S  + LD + +  +I           G+Q+HA  +
Sbjct: 246 ISGYVHRGFYEEAFDLLRRMH----SLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP------WNLL--------- 146
              ++ +   V  L    A  +LY     LVE   +   +P      WN +         
Sbjct: 302 RTVVQPSGHFV--LSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARR 359

Query: 147 ----------------------ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA 184
                                 IS   ++GF  E L ++ QM+   +   ++ Y   + +
Sbjct: 360 IEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIAS 419

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
           C  +  +D G+ +HS  I   H+ SL V NAL++MY + G V+ A  +F  M   D+VSW
Sbjct: 420 CSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSW 479

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
           N MI+A A  G   +A QL+ +M +E +  + IT+ TI                      
Sbjct: 480 NAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTI---------------------- 517

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG--EYENVRNALITMYSRCKDL 361
                        L ACSH G +K G+  +   +R CYG    E+  + LI +  R    
Sbjct: 518 -------------LSACSHAGLVKEGRH-YFDTMRVCYGITPEEDHYSRLIDLLCRAGMF 563

Query: 362 RHAY-ILFKMTAEKSIITWNSMLSG 385
             A  +   M  E     W ++L+G
Sbjct: 564 SEAKNVTESMPFEPGAPIWEALLAG 588



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 112/293 (38%), Gaps = 55/293 (18%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A  I  C  + +L  G+QLH+  I LG + +  +   L+T Y+        C LVE +
Sbjct: 412 AYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSR-------CGLVEAA 464

Query: 136 NIRY-------PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
           +  +        + WN +I+   + G   +A+ +Y++M    I  D  T+ ++L AC   
Sbjct: 465 DTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHA 524

Query: 189 MDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
             V  GR     +  C              YG   + D   RL D +             
Sbjct: 525 GLVKEGRHYFDTMRVC--------------YGITPEEDHYSRLIDLLCR----------- 559

Query: 249 AYASKGLWKEAFQLFVEMQ-EEGVEVNVITWNTIAGGCLRTGN----FKGVLELLSRMRT 303
                G++ EA  +   M  E G  +    W  +  GC   GN     +    LL  M  
Sbjct: 560 ----AGMFSEAKNVTESMPFEPGAPI----WEALLAGCWIHGNMELGIQAADRLLELMPQ 611

Query: 304 QE-TYLDSVATVIGLGACSHVGAL-KLGKEIHGSAVRGC-YGEYENVRNALIT 353
           Q+ TY+        LG    V  + KL +E       GC + E EN+ +  + 
Sbjct: 612 QDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLV 664



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
           A++++    +  H +IL    F    L+ N L++ Y +S  +P A+ +FD + + D V  
Sbjct: 7   AQLSHTSFARAVHAHILTSG-FKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAA 65

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           T++++ Y   G  ++A +LF       I+ D V+  A+++A SHS
Sbjct: 66  TTMLSAYSAAGNIKLAHQLFNA-TPMSIR-DTVSYNAMITAFSHS 108


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 204/661 (30%), Positives = 330/661 (49%), Gaps = 47/661 (7%)

Query: 55  KAFEAFTRIRITAASHDVVLD---SFAHIIFCCGKVKALAQGKQLHA--CAIALGLEKNP 109
           +   A +  R   +S D VL    SFA +     +V + + G   HA  C +      N 
Sbjct: 98  QPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNN 157

Query: 110 VLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM-Q 167
           V V   L+  Y      ++A  + +    R  + W  ++S Y       EA  +++ M Q
Sbjct: 158 VFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQ 217

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQV 225
              +  + F   +VL A    + +  G  +H  +  D    + + V N+LV+MY K   +
Sbjct: 218 ECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGF-VSVENSLVTMYAKAECM 276

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D A  +F    ER++++W+ MI+ YA  G    A  +F++M   G      T        
Sbjct: 277 DAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFT-------- 328

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                F G+L                       A S +GAL +GK+ HG  V+  +    
Sbjct: 329 -----FVGILN----------------------ASSDMGALVVGKQAHGLMVKLGFERQV 361

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAE-KSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
            V++AL+ MY++C     A   F    +   ++ W +M++G+      EE+  L+  M +
Sbjct: 362 YVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDK 421

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            GV P+Y+T+ S+L  CA +A L+ GK+ H  IL+   F     +  +L  MY++ G + 
Sbjct: 422 EGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCG-FGLGGSVGTALSTMYSKCGNLE 480

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           ++  VF  M  RD +++ S+I+G+   G GR AL LFEEM    I PDH+T + VL ACS
Sbjct: 481 DSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACS 540

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV  G   F  M+  YG+ P+L+H+AC+VD+  RAG L +AK+ I  +     + +W
Sbjct: 541 HMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLW 600

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             +LGAC+  R+  +G +A E+L+E   E+S  Y+L++N+YAA   W+ + +VR  MR  
Sbjct: 601 RIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLR 660

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
           GV K PGC+WV+  N  + F+V +  + +A++I   L  L + MKD GY    +F  ++E
Sbjct: 661 GVSKDPGCSWVELNNQVNVFVVGEQQHPEAEKINVELIRLAKHMKDEGYRQTYKFLFDDE 720

Query: 705 I 705
           +
Sbjct: 721 L 721



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 241/518 (46%), Gaps = 66/518 (12%)

Query: 79  HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY---------ASFSLYNNAC 129
           H+      V+    G  LH  A+  G   +  +   L+TFY         A+F+++ +  
Sbjct: 19  HLRCAASSVRTRRAGDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADI- 77

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR--IRGDNFTYPSVLKACGE 187
                + +R    WN L++   R    A AL  ++ M S    +     ++ +V  A   
Sbjct: 78  ----PAGLRDVASWNSLLNPLSRHQPLA-ALSHFRSMMSSTDAVLPTPHSFAAVFTAAAR 132

Query: 188 MMDVDFGRVVHSCIDACHEWS------LFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
           +     G V H+   AC   S      +FV  AL++MY K G +  ARR+FD+M  R+AV
Sbjct: 133 VPSASAGAVAHAF--ACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAV 190

Query: 242 SWNTMISAYASKGLWKEAFQLF-VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
           SW  M+S YA+    +EAF+LF + +QE  +E N                          
Sbjct: 191 SWAAMVSGYATGKCSEEAFELFRLMLQECPLEKN-------------------------- 224

Query: 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
                   + VAT + L A S    L +G ++HG  ++     + +V N+L+TMY++ + 
Sbjct: 225 --------EFVATAV-LSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAEC 275

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           +  A  +F  + E++ ITW++M++GY     A+ +A +F +M  +G  P   T   IL  
Sbjct: 276 MDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNA 335

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEV 479
            + +  L  GK+ H  +++   F   + + ++LV+MYA+ G   +AK  F  L    D V
Sbjct: 336 SSDMGALVVGKQAHGLMVKLG-FERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVV 394

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
            +T++I G+   GE   AL L+  M+K  + P ++T+ +VL AC+    +  G++   ++
Sbjct: 395 IWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQI 454

Query: 540 TSI-YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
               +G+   +     +  +Y + G L  +  +  +MP
Sbjct: 455 LKCGFGLGGSVG--TALSTMYSKCGNLEDSMVVFRRMP 490


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 330/622 (53%), Gaps = 42/622 (6%)

Query: 79  HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIR 138
           H++     + +L   +Q H+  +     +N  L  +L++ YA+F     +  + ++ + +
Sbjct: 31  HLLQLSIDLHSLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTK 90

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
               WN LI+ YV++  +  A+ +++QM  R +  D++T  ++ K  GE+ D+  G+++H
Sbjct: 91  NVYLWNSLINGYVKNHQFDNAIVLFRQM-GRCLLPDDYTLATISKVSGEIQDLVLGKLIH 149

Query: 199 -SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG--- 254
              +       + V N+++SMY +  +   A ++FD+M +R+  S+N +IS  A+ G   
Sbjct: 150 GKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLD 209

Query: 255 --LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT-GNFKGVLELLSRMRTQETYLDSV 311
             L+ + +  F  MQ +G   +  T  ++   C  + G F    EL         YL  V
Sbjct: 210 YSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGREL-------HCYL--V 260

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
              + L  CS V                      ++ ++LI MYSR   L  +  +F   
Sbjct: 261 KNGLDLKMCSDV----------------------HMGSSLIDMYSRSNKLVLSRRVFDQM 298

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHG 430
             ++I  W +M++GY      E +  LFREM R   + PN V++ S+LP C  +  L  G
Sbjct: 299 KSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPNRVSLVSVLPACGLLVGLMGG 358

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYG 489
           K+ H + ++   FN+++ L N+L++MYA+ G +  A+ VFD  S  +D +T++S+I+ YG
Sbjct: 359 KQVHAFSIKME-FNDYISLRNALIDMYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYG 417

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
           + G+G+ AL  + EM +  IKPD +T+V VLSAC  SGLV EG   +  +T+ Y + P +
Sbjct: 418 LHGKGQEALTTYYEMLQQGIKPDMITVVGVLSACCRSGLVDEGISIYNSLTTEYEMKPSV 477

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           E   C+VDL GR+G L++A + I +MP  P  ++W +LL A  IH N+   + A   LLE
Sbjct: 478 EICGCVVDLLGRSGQLDQALDFIREMPIIPGPSVWGSLLTASVIHGNSMTRDLAYRCLLE 537

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             PEN   Y+ ++N YA++  WD++ +VR+ M++ G+RK+PG +W+   +    F V D 
Sbjct: 538 LEPENPSNYISLSNTYASSRRWDEITEVRSMMKERGLRKVPGISWITISDKNHFFTVADK 597

Query: 670 SNVQAQEIYPLLGGLTELMKDA 691
            +  +  IY +L  L  +M D 
Sbjct: 598 VHPSSSSIYEMLDDLVSIMTDG 619



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 39/246 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN- 134
           S   ++  CG +  L  GKQ+HA +I +       L   L+  YA     + A  + +N 
Sbjct: 341 SLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFDNG 400

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
           S  +  + W+ +IS Y   G   EAL  Y +M  + I+ D  T   VL AC     VD G
Sbjct: 401 SYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVGVLSACCRSGLVDEG 460

Query: 195 RVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKM------------LERDA 240
             +++ +   +E   S+ +   +V + G+ GQ+D A     +M            L    
Sbjct: 461 ISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPIIPGPSVWGSLLTASV 520

Query: 241 VSWNTMI-----------------------SAYASKGLWKEAFQLFVEMQEEGV-EVNVI 276
           +  N+M                        + YAS   W E  ++   M+E G+ +V  I
Sbjct: 521 IHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEVRSMMKERGLRKVPGI 580

Query: 277 TWNTIA 282
           +W TI+
Sbjct: 581 SWITIS 586


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 198/658 (30%), Positives = 323/658 (49%), Gaps = 41/658 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L ++   G  S   + F  +  +    D V  +F  ++    KV +LA G+Q+H  A+ L
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDVECDQV--TFILMLATAVKVDSLALGQQVHCMALKL 344

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL+    +   L+  Y     +  A  + +N + R  + WN +I+   ++G   EA+C++
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLF 404

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMD-VDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222
            Q+    ++ D +T  SVLKA   + + +   + VH            VH        K 
Sbjct: 405 MQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVH------------VHAI------KI 446

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             V             D+     +I AY+     KEA  LF     E    +++ WN + 
Sbjct: 447 NNVS------------DSFVSTALIDAYSRNRCMKEAEILF-----ERHNFDLVAWNAMM 489

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
            G  ++ +    L+L + M  Q    D          C  + A+  GK++H  A++  Y 
Sbjct: 490 AGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYD 549

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFRE 401
               V + ++ MY +C D+  A   F        + W +M+SG    +  EE AF +F +
Sbjct: 550 LDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIE-NGEEERAFHVFSQ 608

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   GV P+  TIA++    + +  L+ G++ H   L+    N+  +   SLV+MYA+ G
Sbjct: 609 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFV-GTSLVDMYAKCG 667

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + +A  +F  +   +   + +++ G    GEG+  L+LF++M    IKPD VT + VLS
Sbjct: 668 SIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLS 727

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSHSGLV E  K    M   YGI P++EH++C+ D  GRAGL+ +A+ +I  M    ++
Sbjct: 728 ACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASA 787

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           +M+ TLL AC++  +T  G+  A KLLE  P +S  YVL++NMYAA   WD++   RT M
Sbjct: 788 SMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMM 847

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           +   V+K PG +W++  N    F+VDD SN Q + IY  +  +   +K  GYV + +F
Sbjct: 848 KGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDF 905



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 131/547 (23%), Positives = 234/547 (42%), Gaps = 53/547 (9%)

Query: 90  LAQGKQLHACAIALGLEKNP--VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           L  GK  HA    L  E+NP   L+  L++ Y+       A  + +    R  + WN ++
Sbjct: 55  LMLGKCTHA--RILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112

Query: 148 SLYVRDG-----FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           + Y +          +A  +++ ++   +     T   +LK C     V      H    
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGY-- 170

Query: 203 ACH---EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
           AC    +   FV  ALV++Y KFG+V   + LF++M  RD V WN M+ AY   G  +EA
Sbjct: 171 ACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA 230

Query: 260 FQLFVEMQEEGVEVNVITWNTIA----------------------------------GGC 285
             L       G+  N IT   +A                                     
Sbjct: 231 IDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEY 290

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
           L +G +  +L+  + M   +   D V  ++ L     V +L LG+++H  A++       
Sbjct: 291 LHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLML 350

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V N+LI MY + +    A  +F   +E+ +I+WNS+++G        E+  LF ++ R 
Sbjct: 351 TVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRC 410

Query: 406 GVEPNYVTIASILPLCARVAN-LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           G++P+  T+ S+L   + +   L   K+ H + ++    ++   +  +L++ Y+R+  + 
Sbjct: 411 GLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDS-FVSTALIDAYSRNRCMK 469

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           EA+ +F+     D V + +++AGY    +G   LKLF  M+K   + D  T+  V   C 
Sbjct: 470 EAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCG 528

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
               + +G KQ        G    L   + ++D+Y + G ++ A+     +P  P    W
Sbjct: 529 FLFAINQG-KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP-VPDDVAW 586

Query: 585 ATLLGAC 591
            T++  C
Sbjct: 587 TTMISGC 593


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 190/665 (28%), Positives = 335/665 (50%), Gaps = 43/665 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALG 104
            AG  N S ++EA            +  D F  +  +  CG    +  G+ LH  ++  G
Sbjct: 128 IAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSG 187

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           L  +  +   L+  Y         C + +    R  + W  +I+  V  G+  EAL  + 
Sbjct: 188 LINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFS 247

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M   ++  D+ T+   LKA  +   +  G+ +H+  I    + S FV N L +MY K G
Sbjct: 248 EMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCG 307

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           + D   RLF+KM   D                                   V++W T+  
Sbjct: 308 KADYVMRLFEKMKMPD-----------------------------------VVSWTTLIT 332

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
             ++ G  +  +E   RMR      +       + AC+++   K G++IHG  +R    +
Sbjct: 333 TYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVD 392

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             +V N+++T+YS+   L+ A ++F     K II+W+++++ Y+    A+E+      M 
Sbjct: 393 ALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMR 452

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           R G +PN   ++S+L +C  +A L+ GK+ H ++L   + +E  ++ ++L+ MY++ G V
Sbjct: 453 REGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHE-AMVHSALISMYSKCGSV 511

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            EA  +F+ M   + +++T++I GY   G  + A+ LFE+++   +KPD+VT + VL+AC
Sbjct: 512 EEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTAC 571

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           SH+G+V  G   F  MT+ Y I P  EH+ C++DL  RAG L++A+ +I  MP      +
Sbjct: 572 SHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVV 631

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W+TLL +C++H +   G W AE+LL   P ++G ++ +AN+YAA G W + A +R  M+ 
Sbjct: 632 WSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKS 691

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
            GV K  G +WV+  +  + F+  D ++ Q++ I  +L  L+  + DA    ++E  S  
Sbjct: 692 KGVIKERGWSWVNVNDKLNAFVAGDQAHPQSEHITTVLELLSANIGDA----RQEIRSLN 747

Query: 704 EIVEE 708
           + VE+
Sbjct: 748 DDVED 752



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 164/364 (45%), Gaps = 43/364 (11%)

Query: 211 VHNAL-----VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           VHN L     +    K GQ+  +R +FDKM  RD +SW T+                   
Sbjct: 87  VHNMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTL------------------- 127

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL-DSVATVIGLGACSHVG 324
                          IAG    + +++ ++ L S M  Q     D     + L AC    
Sbjct: 128 ---------------IAGYVNASDSYEALI-LFSNMWVQPGLQRDQFMISVALKACGLGV 171

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
            +  G+ +HG +V+        V +ALI MY +   +     +FK   ++++++W ++++
Sbjct: 172 NICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIA 231

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           G  H     E+   F EM+ S V  +  T A  L   A  + L HGK  H   +++  F+
Sbjct: 232 GLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQG-FD 290

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
           E   + N+L  MY + GK      +F+ M   D V++T+LI  Y  +GE   A++ F+ M
Sbjct: 291 ESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRM 350

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            K+ + P+  T  AV+SAC++  +   G++    +  + G+   L     +V LY ++GL
Sbjct: 351 RKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRL-GLVDALSVANSIVTLYSKSGL 409

Query: 565 LNKA 568
           L  A
Sbjct: 410 LKSA 413



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 8/251 (3%)

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCAR 423
           Y+  KMT  +  I+W ++++GY +   + E+  LF  M+ + G++ +   I+  L  C  
Sbjct: 111 YMFDKMT-HRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGL 169

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
             N+  G+  H + ++  + N  + + ++L++MY + GK+ +   VF  M++R+ V++T+
Sbjct: 170 GVNICFGELLHGFSVKSGLINS-VFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTA 228

Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
           +IAG    G    AL  F EM  +++  D  T    L A + S L+  G K     T   
Sbjct: 229 IIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHG-KAIHTQTIKQ 287

Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           G          +  +Y + G  +    +  KM   P    W TL+     +   G  E A
Sbjct: 288 GFDESSFVINTLATMYNKCGKADYVMRLFEKMK-MPDVVSWTTLI---TTYVQKGEEEHA 343

Query: 604 AEKLLETRPEN 614
            E     R  N
Sbjct: 344 VEAFKRMRKSN 354



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            ++L  NS ++   + G++ +++ +FD M+ RDE+++T+LIAGY    +   AL LF  M
Sbjct: 88  HNMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNM 147

Query: 505 -NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
             +  ++ D   +   L AC     +  G+      +   G+   +   + ++D+Y + G
Sbjct: 148 WVQPGLQRDQFMISVALKACGLGVNICFGE-LLHGFSVKSGLINSVFVSSALIDMYMKVG 206

Query: 564 LLNKAKEIITKM 575
            + +   +  KM
Sbjct: 207 KIEQGCRVFKKM 218


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 199/689 (28%), Positives = 325/689 (47%), Gaps = 87/689 (12%)

Query: 83  CCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP 142
           CC K+       QLH+  +  GL  +  +V KL   YA ++  ++A  L + +  R    
Sbjct: 149 CCSKLSI----SQLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYL 204

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQ-----SRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           WN L+  Y  +G + E L +++QM      S   R DN++    LK+C  +  +  G+V+
Sbjct: 205 WNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVI 264

Query: 198 HSCIDACH-EWSLFVHNALVSM-------------------------------YGKFGQV 225
           H  +     +  +FV +AL+ +                               Y + G  
Sbjct: 265 HGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSP 324

Query: 226 DVARRLFDKMLERDAVS----------------------------------------WNT 245
           ++A   F +M+  + VS                                         N+
Sbjct: 325 ELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANS 384

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           ++  Y   G  K A  LF EM ++    ++I+W+T+       G    VL+L + M  + 
Sbjct: 385 LLHLYGKTGSIKNASNLFREMSDK----DIISWSTMVACYADNGAETDVLDLFNEMLDKR 440

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
              + V  V  L AC+ +  L+ G +IH  AV   +     V  AL+ MY +C     A 
Sbjct: 441 IKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAV 500

Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425
            LF    +K +I W  + SGY       ES ++FR M  SG  P+ + +  IL   + + 
Sbjct: 501 DLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELG 560

Query: 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
            LQ     H ++++   F  +  +  SL+E+YA+   + +A  VF  M+ +D VT++S+I
Sbjct: 561 ILQQAVCLHAFVIKNG-FENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSII 619

Query: 486 AGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           A YG  G+G  ALKLF +M N +  KP++VT +++LSACSHSGL+ EG   F+ M + Y 
Sbjct: 620 AAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYK 679

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           + P  EH+A MVDL GR G L+ A ++I  MP      +W  LLGAC+IH+N  +GE AA
Sbjct: 680 LKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNIKMGEVAA 739

Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
           + L    P ++GYY+L++N+Y+    W    K+R  +++  + KI G + V+  N    F
Sbjct: 740 KNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSVVELKNEVRSF 799

Query: 665 LVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           +  D  + ++  IY +L  L   M++  +
Sbjct: 800 IAGDRIHDESDHIYEILTKLHAKMREVAF 828



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 186/429 (43%), Gaps = 42/429 (9%)

Query: 48  AGRGNLSKAFEAFTRIRIT-AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +G   L+ AF  F+R+ ++   S D V  +   +   C ++     G+ +H      GL+
Sbjct: 321 SGSPELALAF--FSRMVVSEKVSPDPV--TLVSVASACAQLSNFKLGRSVHGFVKRKGLD 376

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               L   L+  Y       NA  L    + +  + W+ +++ Y  +G   + L ++ +M
Sbjct: 377 NKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEM 436

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
             +RI+ +  T  SVL+AC  + +++ G  +H   ++   E    V  AL+ MY K    
Sbjct: 437 LDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSP 496

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + A  LF++M ++D ++W  + S YA  G+  E+  +F  M   G               
Sbjct: 497 EKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSG--------------- 541

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                               T  D++A V  L   S +G L+    +H   ++  +   +
Sbjct: 542 --------------------TRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQ 581

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF-R 404
            +  +LI +Y++C  +  A  +FK    K ++TW+S+++ Y      EE+  LF +M   
Sbjct: 582 FIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANH 641

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           S  +PN VT  SIL  C+    ++ G      ++ +     +   +  +V++  R G++ 
Sbjct: 642 SDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELD 701

Query: 465 EAKSVFDLM 473
            A  V + M
Sbjct: 702 MALDVINNM 710


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 183/564 (32%), Positives = 286/564 (50%), Gaps = 69/564 (12%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+ N L+ +Y K G +  AR LFDKM  RD  SWN M+SAY+  G  ++   +F +M   
Sbjct: 59  FLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVH 118

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
               + +++NT+  G    G     LE   RM+ +         V  L ACS +  +K G
Sbjct: 119 ----DAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRG 174

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           K+IHG  V    GE   V NAL  MY++C  L  A  LF     K++++WNSM+SGY   
Sbjct: 175 KQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQN 234

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILP-----------------------LC---AR 423
              E    LF EM  SG+ P+ VTI++IL                        +C     
Sbjct: 235 GQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMM 294

Query: 424 VANLQHGKEFHCYILRRAMFNEH------------------------------------- 446
           V   Q+GKE    +L R M  E+                                     
Sbjct: 295 VGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVD 354

Query: 447 --LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
             LL+ ++LV+MY++ G+  +A  VF  M  R+ +++ S+I GY   G+   AL L+EEM
Sbjct: 355 HDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEM 414

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
               +KPD++T V VLSAC H+GLV  GQ  F  ++ I+G+ P  +H++CM++L GRAG 
Sbjct: 415 LHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGY 474

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           ++KA ++I  M + P   +W+TLL  C+I+ +   GE AA  L E  P N+G Y++++N+
Sbjct: 475 MDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNI 534

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YAA G W  +A VR+ M++  ++K    +W++  N    F+ +D ++ + ++IY  L  L
Sbjct: 535 YAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRL 594

Query: 685 TELMKDAGYVVKEEFCSEEEIVEE 708
            + ++++G+         + + EE
Sbjct: 595 IKKLQESGFTPDTNLVLHDVVEEE 618



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/517 (23%), Positives = 230/517 (44%), Gaps = 69/517 (13%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHA-CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
           +S+  ++  C +   + Q K+L     + L    +  L  +L+  YA     ++A  L +
Sbjct: 23  ESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFD 82

Query: 134 NSNIRYPLPWNLLISLYVR-------------------------------DGFYAEALCV 162
             + R    WN ++S Y +                               +G  ++AL  
Sbjct: 83  KMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEF 142

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGK 221
           + +MQ       ++T+ SVL AC +++D+  G+ +H  I A     S+FV NAL +MY K
Sbjct: 143 FVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAK 202

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV---------- 271
            G +D AR LFD+M+ ++ VSWN+MIS Y   G  +   +LF EMQ  G+          
Sbjct: 203 CGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNI 262

Query: 272 ---------------------EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                                E + + W T+  GC + G  +  L L   M  +    D+
Sbjct: 263 LSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDN 322

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 + +C+ + +L  G+ +HG AV         V +AL+ MYS+C +   A+I+FK 
Sbjct: 323 FTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKR 382

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              +++I+WNSM+ GY       E+  L+ EM    ++P+ +T   +L  C     ++ G
Sbjct: 383 MLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERG 442

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYG 489
           + +   I +    N     ++ ++ +  R+G + +A  +   M+   + + +++L++   
Sbjct: 443 QGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCR 502

Query: 490 IQ---GEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
           I      G +A +   E++ +   P ++ +  + +AC
Sbjct: 503 INCDVNNGEMAARHLFELDPHNAGP-YIMLSNIYAAC 538



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 32/197 (16%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N  +   +L  C R  ++   K    ++           L N L+ +YA+SG + +A+ +
Sbjct: 21  NSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDL 80

Query: 470 FDLMSRR-------------------------------DEVTYTSLIAGYGIQGEGRVAL 498
           FD MSRR                               D V+Y ++IAG+   G    AL
Sbjct: 81  FDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQAL 140

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           + F  M +   +    T V+VL ACS    +  G++   R+ +   +   +  +  + ++
Sbjct: 141 EFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVAT-SLGESVFVWNALTNM 199

Query: 559 YGRAGLLNKAKEIITKM 575
           Y + G L++A+ +  +M
Sbjct: 200 YAKCGALDQARWLFDRM 216


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 194/624 (31%), Positives = 315/624 (50%), Gaps = 50/624 (8%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G QL + A+  GL  N      L+  YA     ++A  + +   +R  + WN LI+ Y  
Sbjct: 114 GAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAE 173

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFV 211
               A+A+ ++ +MQ   +  D+ T+ ++L            + +H  I        L V
Sbjct: 174 SRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVV 233

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE-MQEEG 270
            NA ++ Y + G    +RR+FD +  RD +SWN+M+ AYA  G+  EA + FV  M+E G
Sbjct: 234 LNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESG 293

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           V+ ++ ++ ++   C   G              Q   + S+   IGL   +HV       
Sbjct: 294 VQPDMYSFTSVVSVCSEHGCDD----------RQGRSIHSLVVKIGLEGVTHV------- 336

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKD---LRHAYILFKMTAEKSIITWNSMLSGYT 387
                    C        NA+I MY+R  +   +  AY  F     K  ++WNSML+GY+
Sbjct: 337 ---------C--------NAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYS 379

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
           H   + ++   FR M    V  +   +++ L  C+ +A L+ G++ H  +++   F+ + 
Sbjct: 380 HHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQSG-FSSND 438

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + +SL+ MY++ G V +A+  F+   +   V + S++ GY   G+ +    LF EM  +
Sbjct: 439 FVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDH 498

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
           ++  DHVT VA+L+A SH GLV EG +    M + Y I  ++EH+AC VDLYGRAG L+K
Sbjct: 499 KVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRMEHYACGVDLYGRAGQLDK 558

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           AKE+I  MP+ P + +W TLLGAC+IH N  +    A  L    P     YVL+++MY+ 
Sbjct: 559 AKELIESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLFVAEPRQHSTYVLLSSMYSG 618

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
            G W   A V+  M++ G+ K+PG +W++  N    F  DD S+ +  EI+ +L  L + 
Sbjct: 619 RGMWSDRATVQKVMKNRGLSKVPGWSWIEVKNEVHSFNADDRSHPRMDEIFDMLRMLLQ- 677

Query: 688 MKDAGYVVKEEFCS--EEEIVEEI 709
                  V + FCS  +EEI+ +I
Sbjct: 678 -------VAQRFCSSGDEEILMKI 694



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 148/321 (46%), Gaps = 44/321 (13%)

Query: 213 NALVSMYGKFGQ---VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           N L++ Y   G    +  ARR+FD++   DAVSWN++++A+ + G  ++A++L  +M   
Sbjct: 30  NQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHAR 89

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G     +T +T A G                                          +LG
Sbjct: 90  G-----LTASTFALGSALRSAAAARRP------------------------------ELG 114

Query: 330 KEIHGSAVRGCYGEYENV--RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            ++   AV+   G  +NV   +AL+ +Y++C  L  A  +F     ++ ++WN++++GY 
Sbjct: 115 AQLQSFAVKS--GLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYA 172

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                 ++  LF EM R  + P+  T A++L      +     ++ H  I +       L
Sbjct: 173 ESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGS-ALGL 231

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF-EEMNK 506
           ++ N+ +  Y++ G   +++ +FD +  RD +++ S++  Y   G    A++ F   M +
Sbjct: 232 VVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRE 291

Query: 507 NQIKPDHVTMVAVLSACSHSG 527
           + ++PD  +  +V+S CS  G
Sbjct: 292 SGVQPDMYSFTSVVSVCSEHG 312



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 117/255 (45%), Gaps = 18/255 (7%)

Query: 349 NALITMYSRC---KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
           N L+T YS       L  A  +F        ++WNS+L+ +       ++  L ++M   
Sbjct: 30  NQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHAR 89

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G+  +   + S L   A     + G +   + ++  +  +++   ++L+++YA+ G++ +
Sbjct: 90  GLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLV-DNVFSASALLDVYAKCGRLSD 148

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ VFD M  R+ V++ +LIAGY    +   A++LF EM + ++ PD  T  A+L+    
Sbjct: 149 ARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLA---- 204

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL------YGRAGLLNKAKEIITKMPYTP 579
               VEG   +  M  ++G   +      +V L      Y + G    ++ I   +    
Sbjct: 205 ---TVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRD 261

Query: 580 TSAMWATLLGACQIH 594
             + W ++LGA   H
Sbjct: 262 LIS-WNSMLGAYAYH 275


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 189/641 (29%), Positives = 317/641 (49%), Gaps = 46/641 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALG 104
            A  G     FE F  ++    S  +  D FA+  I+  C  + ++  G  +HA  +  G
Sbjct: 146 LAENGLFLDGFEFFCEMQ----SQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRG 201

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   L+  YA      ++  +         + WN +I+ +  +  Y +A  ++ 
Sbjct: 202 FTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFL 261

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M    +  D  T+  V KA G + DV+  + V    ++   + +  V  AL+ M  K G
Sbjct: 262 RMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG 321

Query: 224 QVDVARRLFDK--MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            +  AR +F+   +  R    WN MIS                                 
Sbjct: 322 SLQEARSIFNSHFITCRFNAPWNAMIS--------------------------------- 348

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GC 340
             G LR+G  +  LEL ++M   + YLD         A + +  L LGK++H  A++ G 
Sbjct: 349 --GYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGL 406

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
              Y ++ NA+   Y++C  L     +F    ++ +I+W S+++ Y+     +++  +F 
Sbjct: 407 EVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFS 466

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M   G+ PN  T +S+L  CA +  L++G++ H  I +  + +    + ++LV+MYA+ 
Sbjct: 467 NMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGL-DMDKCIESALVDMYAKC 525

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G + +AK VF+ +S  D V++T++IAG+   G    AL+LF  M +  ++P+ VT + VL
Sbjct: 526 GCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVL 585

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
            ACSH GLV EG + F+ M   YG+ P++EH+AC+VDL  R G LN A E I++MP  P 
Sbjct: 586 FACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPN 645

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
             +W TLLGAC++H N  +GE AA+K+L  + ENS  YVL++N Y  +G +     +R  
Sbjct: 646 EMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHV 705

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           M++ GV+K PGC+W+        F   D  + +  +IY  L
Sbjct: 706 MKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKL 746



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 238/520 (45%), Gaps = 53/520 (10%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNP--VLVPKLVTFYASFSLYNNACFLVENSNIRYPL 141
           C   + L Q K +H   +      +   VL+  +   Y+  S  + AC L +  + R   
Sbjct: 78  CVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTF 137

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
            W +LI+    +G + +    + +MQS+ I  D F Y  +L+ C  +  ++ G +VH+ I
Sbjct: 138 SWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQI 197

Query: 202 DACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
                 S  FV  AL++MY K  +++ + ++F+ M E + VSWN MI+ + S  L+ +AF
Sbjct: 198 VIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAF 257

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            LF+ M  EGV  +  T             F GV + +  +R                  
Sbjct: 258 DLFLRMMGEGVTPDAQT-------------FIGVAKAIGMLRD----------------- 287

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK--MTAEKSIIT 378
                +   KE+ G A+         V  ALI M S+C  L+ A  +F       +    
Sbjct: 288 -----VNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAP 342

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M+SGY      E++  LF +M ++ +  ++ T  S+    A +  L  GK+ H   +
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +  +   ++ + N++   YA+ G + + + VF+ M  RD +++TSL+  Y    E   A+
Sbjct: 403 KSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAI 462

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFAC-- 554
           ++F  M    I P+  T  +VL +C++  L+  GQ+       ++GI  +  L+   C  
Sbjct: 463 EIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQ-------VHGIICKVGLDMDKCIE 515

Query: 555 --MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
             +VD+Y + G L  AK++  ++    T +  A + G  Q
Sbjct: 516 SALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQ 555


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 192/632 (30%), Positives = 316/632 (50%), Gaps = 42/632 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++  G + +AF  F  +R        V  +   ++F    V  LA  + LH CAI  G  
Sbjct: 137 YSRTGRVPEAFSLFDEMRRQGIQPSSV--TVLSLLF---GVSELAHVQCLHGCAILYGFM 191

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  L   ++  Y        +  L +  + R  + WN LIS Y + G   E L + K M
Sbjct: 192 SDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTM 251

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQV 225
           + +       T+ SVL       ++  GR +H  I  A       V  +L+ +Y K G++
Sbjct: 252 RLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKI 311

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D+A R+F++  ++D V W  MIS     G   +A  +F +M + GV+ +  T        
Sbjct: 312 DIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTAT-------- 363

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                    +A+VI   AC+ +G+  LG  I G  +R       
Sbjct: 364 -------------------------MASVIT--ACAQLGSYNLGTSILGYILRQELPLDV 396

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
             +N+L+TMY++C  L  + I+F M   + +++WN+M++GY       E+ FLF EM   
Sbjct: 397 ATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSD 456

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
              P+ +TI S+L  CA    L  GK  H +++R  +    +L+  SLV+MY + G +  
Sbjct: 457 NQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGL-RPCILVDTSLVDMYCKCGDLDT 515

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+  F+ M   D V+++++I GYG  G+G  AL+ + +  ++ +KP+HV  ++VLS+CSH
Sbjct: 516 AQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSH 575

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           +GLV +G   +E MT  +GI P LEH AC+VDL  RAG + +A  +  K    P   +  
Sbjct: 576 NGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPDPVLDVLG 635

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            +L AC+ + N  +G+  A  +L  RP ++G +V +A+ YA+   W+++ +  T MR LG
Sbjct: 636 IILDACRANGNNELGDTIANDILMLRPMDAGNFVQLAHCYASINKWEEVGEAWTYMRSLG 695

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           ++KIPG +++D     + F  D  S+ Q QEI
Sbjct: 696 LKKIPGWSFIDIHGTITTFFTDHNSHPQFQEI 727



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 143/515 (27%), Positives = 254/515 (49%), Gaps = 41/515 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  +   + G  LH   +  GL  +  +   L+ FYA F   + A  + +  
Sbjct: 63  TFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYM 122

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  +PW  +I  Y R G   EA  ++ +M+ + I+  + T  S+L    E+  V   +
Sbjct: 123 PERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHV---Q 179

Query: 196 VVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H C I       + + N+++++YGK G ++ +R+LFD M  RD VSWN++ISAYA  G
Sbjct: 180 CLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIG 239

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              E   L   M+ +G E    T+ ++                                 
Sbjct: 240 NICEVLLLLKTMRLQGFEAGPQTFGSV--------------------------------- 266

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L   +  G LKLG+ +HG  +R  +    +V  +LI +Y +   +  A+ +F+ +++K
Sbjct: 267 --LSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDK 324

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            ++ W +M+SG      A+++  +FR+M + GV+P+  T+AS++  CA++ +   G    
Sbjct: 325 DVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSIL 384

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            YILR+ +  + +   NSLV MYA+ G + ++  VFD+M+RRD V++ +++ GY   G  
Sbjct: 385 GYILRQELPLD-VATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYV 443

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL LF EM  +   PD +T+V++L  C+ +G +  G K         G+ P +     
Sbjct: 444 CEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLG-KWIHSFVIRNGLRPCILVDTS 502

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           +VD+Y + G L+ A+    +MP     +  A ++G
Sbjct: 503 LVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVG 537



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 204/440 (46%), Gaps = 55/440 (12%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N  I+ +   G + + L  Y  M    +  D +T+PS+LKAC  +     G  +H  I  
Sbjct: 30  NATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILV 89

Query: 204 CH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                  ++ ++L++ Y KFG  DVAR++FD M ER+ V W T+I  Y+  G   EAF L
Sbjct: 90  SGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSL 149

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F EM+ +G++ + +T                VL LL                 G+   +H
Sbjct: 150 FDEMRRQGIQPSSVT----------------VLSLL----------------FGVSELAH 177

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           V  L      HG A+   +    N+ N+++ +Y +C ++ ++  LF     + +++WNS+
Sbjct: 178 VQCL------HGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSL 231

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +S Y  +    E   L + M   G E    T  S+L + A    L+ G+  H  ILR   
Sbjct: 232 ISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGF 291

Query: 443 F-NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           + + H  +  SL+ +Y + GK+  A  +F+  S +D V +T++I+G    G    AL +F
Sbjct: 292 YLDAH--VETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVF 349

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE------HFACM 555
            +M K  +KP   TM +V++AC+  G        +   TSI G   + E          +
Sbjct: 350 RQMLKFGVKPSTATMASVITACAQLG-------SYNLGTSILGYILRQELPLDVATQNSL 402

Query: 556 VDLYGRAGLLNKAKEIITKM 575
           V +Y + G L+++  +   M
Sbjct: 403 VTMYAKCGHLDQSSIVFDMM 422


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/543 (31%), Positives = 291/543 (53%), Gaps = 44/543 (8%)

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFV 211
           G YA  L     +Q   +  D   Y  +LK C  +  V+ GR+VH+ +   H  +  L +
Sbjct: 71  GLYALDL-----IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVL 125

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N +V+MY K G +D ARR+FD+M  +D V+W  +I+ ++     ++A  LF +M   G+
Sbjct: 126 QNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGL 185

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
           + N  T +++                                   L A      L  G +
Sbjct: 186 QPNHFTLSSL-----------------------------------LKASGSEHGLDPGTQ 210

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           +H   ++  Y     V +AL+ MY+RC  +  A + F     KS ++WN+++SG+     
Sbjct: 211 LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGE 270

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
            E +  L  +M R   +P + T +S+   CA +  L+ GK  H ++++  +      + N
Sbjct: 271 GEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGL-KLIAFIGN 329

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +L++MYA++G + +AK VFD + + D V++ +++ G    G G+  L  FE+M +  I+P
Sbjct: 330 TLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEP 389

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           + ++ + VL+ACSHSGL+ EG   FE M   Y + P + H+   VDL GR GLL++A+  
Sbjct: 390 NEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERF 448

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I +MP  PT+A+W  LLGAC++H+N  +G +AAE+  E  P +SG  +L++N+YA+ G W
Sbjct: 449 IREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRW 508

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
             +AKVR  M++ GV+K P C+WV+  N    F+ +D ++ Q +EI      ++  +K+ 
Sbjct: 509 RDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEI 568

Query: 692 GYV 694
           GYV
Sbjct: 569 GYV 571



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 182/401 (45%), Gaps = 54/401 (13%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAI-ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++ ++  C ++  + QG+ +HA  + +  L+ + VL   +V  YA     ++A  + +  
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + W  LI+ + ++    +AL ++ QM    ++ ++FT  S+LKA G    +D G 
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGT 209

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+ C+   ++ S++V +ALV MY + G +D A+  FD M  +  VSWN +IS +A KG
Sbjct: 210 QLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKG 269

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             + A  L  +MQ +  +    T++++                                 
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSV--------------------------------- 296

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
               AC+ +GAL+ GK +H   ++        + N L+ MY++   +  A  +F    + 
Sbjct: 297 --FSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKP 354

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +++WN+ML+G       +E+   F +M R G+EPN ++   +L  C+    L  G    
Sbjct: 355 DVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEG---- 410

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
                        L +  L++ Y     VP   +  DL+ R
Sbjct: 411 -------------LYYFELMKKYKVEPDVPHYVTFVDLLGR 438



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 1/215 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + + ++   G    L  G QLHA  +  G + +  +   LV  YA     + A    +  
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN LIS + R G    AL +  +MQ +  +  +FTY SV  AC  +  ++ G+
Sbjct: 251 PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGK 310

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  I +  +   F+ N L+ MY K G +D A+R+FD++++ D VSWNTM++  A  G
Sbjct: 311 WVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHG 370

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           L KE    F +M   G+E N I++  +   C  +G
Sbjct: 371 LGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSG 405



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 36/233 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +++ +   C  + AL QGK +HA  I  GL+    +   L+  YA     ++A  + +  
Sbjct: 292 TYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL 351

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + WN +++   + G   E L  ++QM    I  +  ++  VL AC     +D G 
Sbjct: 352 VKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGL 411

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---- 249
                +     E  +  +   V + G+ G +D A R   +M +E  A  W  ++ A    
Sbjct: 412 YYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMH 471

Query: 250 ------------------------------YASKGLWKEAFQLFVEMQEEGVE 272
                                         YAS G W++  ++   M+E GV+
Sbjct: 472 KNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVK 524


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 191/633 (30%), Positives = 314/633 (49%), Gaps = 49/633 (7%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           CG +  +  G++ H  +I +GL+ N  +   L+  YA      +A     +      + +
Sbjct: 118 CGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSF 177

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG-------------EMMD 190
             ++          EA  +++ M   RI  D+ +  SVL  C              +++ 
Sbjct: 178 TAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLS 237

Query: 191 VDF-GRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
            D  G+ VH C+   H  E  L ++N+L+ MY K G +D A  +F  M E   VSWN MI
Sbjct: 238 SDVHGQQVH-CLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMI 296

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVIT------------------------------ 277
           + Y  K    +A +    MQ  G E + IT                              
Sbjct: 297 AGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLS 356

Query: 278 -WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
            WNTI  G  +  N K  ++L   M+ +  + D     I L + + +  L+ G+++H  +
Sbjct: 357 SWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVS 416

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
            +  +     + + LI MYS+C  +  A  +F   AE  I+ WNSM++G +     +E+ 
Sbjct: 417 QKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAF 476

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
             F++M   G+ P+  + A++L  CA++++L  G++ H  I R    N+   + ++L++M
Sbjct: 477 TFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMND-AFVGSALIDM 535

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y++ G V  A+ VFD+M  ++ VT+  +I GY   G G  A+ L+E+M  +  KPD +T 
Sbjct: 536 YSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITF 595

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           VAVL+ACSHSGLV  G K F  M   +G+ P ++H+ C++D  GRAG L++A+ +I KMP
Sbjct: 596 VAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMP 655

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
                 +W  LL +C+++ +  +   AAE+L    P+NS  YVL+AN+Y++ G WD    
Sbjct: 656 CKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKA 715

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
           VR  M    V K PG +W++  N    F+VDD 
Sbjct: 716 VRELMSYNQVVKDPGYSWIEHKNGMQAFMVDDN 748



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 187/392 (47%), Gaps = 53/392 (13%)

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           F+ N L+  Y K   +D +RRLFD+M +RD  +WN ++ AY      ++A  LF EM E 
Sbjct: 41  FLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPER 100

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
               N+++WNT+     R                              GAC  +  ++ G
Sbjct: 101 ----NIVSWNTLISALTRN-----------------------------GACGALVDVECG 127

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +  HG +++        V NAL+ MY++C+ +  A   F    E + +++ +M+ G    
Sbjct: 128 RRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADS 187

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCAR--------------VANLQHGKEFHC 435
           D   E+  LFR M R+ +  + V+++S+L +C+R              +++  HG++ HC
Sbjct: 188 DQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHC 247

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
             ++   F   L L NSL++MYA++G +  A+ +F  M     V++  +IAGYG + +  
Sbjct: 248 LTIKHG-FESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSS 306

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A++  + M  +  +PD +T V +L AC  SG +  G++ F+ M+S     P L  +  +
Sbjct: 307 KAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSS-----PSLSSWNTI 361

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
           +  Y +     +A ++  +M +        TL
Sbjct: 362 LSGYSQNENHKEAVKLFREMQFRSVHPDRTTL 393



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/502 (21%), Positives = 220/502 (43%), Gaps = 61/502 (12%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            A ++  C   KA   GK +HA  +   L  +  L  +L+ FYA  +  + +  L +   
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLK--ACGEMMDVDFG 194
            R    WN ++  Y +     +A  ++ +M  R I   N    ++ +  ACG ++DV+ G
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECG 127

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R  H   I    + +++V NAL+ MY K   +  A + F  + E + VS+  M+   A  
Sbjct: 128 RRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADS 187

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
               EAF+LF  M    + V+ ++ +++ G C R G  +  L   + + + + +      
Sbjct: 188 DQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVH------ 241

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                          G+++H   ++  +    ++ N+L+ MY++  ++  A ++F    E
Sbjct: 242 ---------------GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPE 286

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
            S+++WN M++GY     + ++    + M   G EP+ +T  ++L  C +  +++ G++ 
Sbjct: 287 VSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQ- 345

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
                                              +FD MS     ++ ++++GY     
Sbjct: 346 -----------------------------------MFDGMSSPSLSSWNTILSGYSQNEN 370

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
            + A+KLF EM    + PD  T+  +LS+ +   +++EG +Q   ++        +   +
Sbjct: 371 HKEAVKLFREMQFRSVHPDRTTLAIILSSLA-GMMLLEGGRQVHAVSQKAVFRTDIYLAS 429

Query: 554 CMVDLYGRAGLLNKAKEIITKM 575
            ++ +Y + G +  AK I  ++
Sbjct: 430 GLIGMYSKCGKVEMAKRIFDRI 451



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 7/230 (3%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S+A ++ CC K+ +L+QG+Q+H+     G   +  +   L+  Y+     + A ++ +  
Sbjct: 493 SYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMM 552

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I  Y ++G   EA+ +Y+ M     + D  T+ +VL AC     VD G 
Sbjct: 553 LGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGI 612

Query: 196 VVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
            + + +   H     V  +  ++   G+ G++  A  L DKM  + D + W  ++S+   
Sbjct: 613 KIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRV 672

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
           YA   L + A +    +  +     V+  N I     R  + K V EL+S
Sbjct: 673 YADVSLARRAAEELFHLDPQNSAPYVLLAN-IYSSLGRWDDAKAVRELMS 721


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 195/627 (31%), Positives = 318/627 (50%), Gaps = 40/627 (6%)

Query: 71  DVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA 128
           +V+ D +  + I+  C  +  L  GKQ+HA  +    + +      L+ FY         
Sbjct: 238 NVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAG 297

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             L +  +++  + W  +I+ Y+++ +  EA+ +  +M     + D +   SVL +CG +
Sbjct: 298 KALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSV 357

Query: 189 MDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
             +  GR +HS  I  C E   FV NAL+ MY K   +D A+R+FD +     V +N MI
Sbjct: 358 DALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMI 417

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
             Y+                                   R G   G LE+   MR +   
Sbjct: 418 EGYS-----------------------------------RQGYLCGALEVFQEMRLKHVS 442

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
              +  V  LG  + +  L+L K+IHG  ++  +   +   +ALI +YS+C  +R A  +
Sbjct: 443 PSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYV 502

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F+ T  K I+ WNS+ SGY     +EE+  L+ ++  S   PN  T A++    + +A+L
Sbjct: 503 FEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASL 562

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            HG++FH  +++  + ++  +  N+LV+MYA+ G V EA+ +F     +D   + S+I+ 
Sbjct: 563 PHGQQFHNQVMKMGLESDPFIT-NALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISM 621

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           Y   G+   AL++FE M  N I P++VT V+VLSACSH G V +G + +  M   YGI P
Sbjct: 622 YAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMAR-YGIEP 680

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
            +EH+A +V L GRAG L +A+E I KM   P + +W +LL AC++  N  + + AAE  
Sbjct: 681 GIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMA 740

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
           +   P +SG YV+++N++A+ G W  + ++R  M   GV K PG +W++       F+  
Sbjct: 741 ISIDPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEVNGEVHIFVSR 800

Query: 668 DTSNVQAQEIYPLLGGLTELMKDAGYV 694
           D  + +   IY  L  LT  MKD G V
Sbjct: 801 DKVHDETDLIYLALDELTTQMKDVGCV 827



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 240/500 (48%), Gaps = 43/500 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A+++      K++   +++H   +  GL+ +  L   L+  Y       +A  L +  
Sbjct: 42  ALANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKM 101

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI-RGDNFTYPSVLKACGEMMDVDFG 194
             R  + W+ ++S+Y + G+  +AL  + + Q   + + + +   S+++AC +    + G
Sbjct: 102 PNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPG 161

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             VHS  I +     ++V  +LV +Y K G++D AR +FD ++ +  V+W  +I+ Y   
Sbjct: 162 SQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKS 221

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G  + + QLF  M E  V  +    ++I   C                            
Sbjct: 222 GRSEVSLQLFNLMMESNVIPDKYVLSSILNAC---------------------------- 253

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                  S +G LK GK+IH   +R       +  N LI  Y++C  ++    LF     
Sbjct: 254 -------SVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDV 306

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K+II+W +M++GY       E+  L  EMFR G +P+    +S+L  C  V  LQHG++ 
Sbjct: 307 KNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQI 366

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H Y+++  + +++ +  N+L++MY++   + +AK VFD+++    V Y ++I GY  QG 
Sbjct: 367 HSYVIKVCLEHDNFVT-NALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGY 425

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF- 552
              AL++F+EM    + P  +T V++L   S + L ++  KQ   +   YG    L+ F 
Sbjct: 426 LCGALEVFQEMRLKHVSPSFLTFVSLLGL-SAALLCLQLSKQIHGLIIKYGF--SLDKFT 482

Query: 553 -ACMVDLYGRAGLLNKAKEI 571
            + ++D+Y +   +  A+ +
Sbjct: 483 SSALIDVYSKCSCIRDARYV 502


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 189/641 (29%), Positives = 317/641 (49%), Gaps = 46/641 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH--IIFCCGKVKALAQGKQLHACAIALG 104
            A  G     FE F  ++    S  +  D FA+  I+  C  + ++  G  +HA  +  G
Sbjct: 146 LAENGLFLDGFEFFCEMQ----SQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRG 201

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
              +  +   L+  YA      ++  +         + WN +I+ +  +  Y +A  ++ 
Sbjct: 202 FTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFL 261

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M    +  D  T+  V KA G + DV+  + V    ++   + +  V  AL+ M  K G
Sbjct: 262 RMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG 321

Query: 224 QVDVARRLFDK--MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            +  AR +F+   +  R    WN MIS                                 
Sbjct: 322 SLQEARSIFNSHFITCRFNAPWNAMIS--------------------------------- 348

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GC 340
             G LR+G  +  LEL ++M   + YLD         A + +  L LGK++H  A++ G 
Sbjct: 349 --GYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGL 406

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
              Y ++ NA+   Y++C  L     +F    ++ +I+W S+++ Y+     +++  +F 
Sbjct: 407 EVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFS 466

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M   G+ PN  T +S+L  CA +  L++G++ H  I +  + +    + ++LV+MYA+ 
Sbjct: 467 NMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGL-DMDKCIESALVDMYAKC 525

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G + +AK VF+ +S  D V++T++IAG+   G    AL+LF  M +  ++P+ VT + VL
Sbjct: 526 GCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVL 585

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
            ACSH GLV EG + F+ M   YG+ P++EH+AC+VDL  R G LN A E I++MP  P 
Sbjct: 586 FACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPN 645

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
             +W TLLGAC++H N  +GE AA+K+L  + ENS  YVL++N Y  +G +     +R  
Sbjct: 646 EMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHL 705

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           M++ GV+K PGC+W+        F   D  + +  +IY  L
Sbjct: 706 MKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKL 746



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 238/520 (45%), Gaps = 53/520 (10%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNP--VLVPKLVTFYASFSLYNNACFLVENSNIRYPL 141
           C   + L Q K +H   +      +   VL+  +   Y+  S  + AC L +  + R   
Sbjct: 78  CVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTF 137

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
            W +LI+    +G + +    + +MQS+ I  D F Y  +L+ C  +  ++ G +VH+ I
Sbjct: 138 SWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQI 197

Query: 202 DACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
                 S  FV  AL++MY K  +++ + ++F+ M E + VSWN MI+ + S  L+ +AF
Sbjct: 198 VIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAF 257

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            LF+ M  EGV  +  T             F GV + +  +R                  
Sbjct: 258 DLFLRMMGEGVTPDAQT-------------FIGVAKAIGMLRD----------------- 287

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK--MTAEKSIIT 378
                +   KE+ G A+         V  ALI M S+C  L+ A  +F       +    
Sbjct: 288 -----VNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAP 342

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+M+SGY      E++  LF +M ++ +  ++ T  S+    A +  L  GK+ H   +
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +  +   ++ + N++   YA+ G + + + VF+ M  RD +++TSL+  Y    E   A+
Sbjct: 403 KSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAI 462

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFAC-- 554
           ++F  M    I P+  T  +VL +C++  L+  GQ+       ++GI  +  L+   C  
Sbjct: 463 EIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQ-------VHGIICKVGLDMDKCIE 515

Query: 555 --MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
             +VD+Y + G L  AK++  ++    T +  A + G  Q
Sbjct: 516 SALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQ 555


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 192/626 (30%), Positives = 311/626 (49%), Gaps = 85/626 (13%)

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
           ++A  L ++   R  + WN+++S   + G   EAL +   MQS+ +R D+ TY S L AC
Sbjct: 221 DHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTAC 280

Query: 186 GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
             +  + +G+ +H+  I        +V +ALV +Y K                       
Sbjct: 281 ARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAK----------------------- 317

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
                    G +KEA  +F  + +     N + W  +  G L+ G F   +EL ++MR +
Sbjct: 318 --------SGCFKEAKGVFNSLHDR----NNVAWTVLISGFLQYGCFTESVELFNQMRAE 365

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
              LD  A    +  C     L LG+++H   ++    +   V N+LI+MY++C +L+ A
Sbjct: 366 LMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 425

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F+   EK I++W SM++ Y+ +    ++    RE F    E N +T  ++L      
Sbjct: 426 EAIFRFMNEKDIVSWTSMITAYSQVGNVAKA----REFFDGMSEKNVITWNAMLG----- 476

Query: 425 ANLQHGKEFHCYILRRAMFNEHLL------------------------------------ 448
           A +QHG E     + + M +E  +                                    
Sbjct: 477 AYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLI 536

Query: 449 ----LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
               + N+++ MY++ G++ EA+ VFD ++ +D V++ ++I GY   G G+ A+++F+++
Sbjct: 537 IDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDI 596

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            K   KPD+++ VAVLS CSHSGLV EG+  F+ M   + I P LEHF+CMVDL GRAG 
Sbjct: 597 LKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGH 656

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L +AK++I  MP  PT+ +W  LL AC+IH N  + E AA+ + E    +SG Y+L+A +
Sbjct: 657 LTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKI 716

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA  G  D  A++R  MRD G++K PG +W++  N    F  DD S+ Q   I   L  L
Sbjct: 717 YADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDEL 776

Query: 685 TELMKDAGYVVKEEFCSEEEIVEEIG 710
            E +   GYV  +   SE    E++ 
Sbjct: 777 MEKIARLGYVRTDSTRSEIHHSEKLA 802



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 227/494 (45%), Gaps = 29/494 (5%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           + +  AS   + ++  H    CG   AL+  ++L    IA     N +    ++  YA  
Sbjct: 31  VAVGLASAVFLQNTLLHAYLSCG---ALSDARRLLLMDIA---HPNVITHNVMLNGYAKL 84

Query: 123 SLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN----FTY 178
              ++A  L      R    WN L+S Y +   Y  +L  +  M      GD+    FT 
Sbjct: 85  GRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRS---GDSWPNAFTL 141

Query: 179 PSVLKACGEM----MDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
              +K+CG +    + +    +V    D+  +    V  ALV M+ + G VD+A RLF +
Sbjct: 142 ACAMKSCGALGWHSLALQLLAMVQK-FDSQDDSE--VAAALVDMFVRCGAVDLASRLFVR 198

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           + E      N+M++ Y        A +LF  M E     +V++WN +     ++G  +  
Sbjct: 199 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER----DVVSWNMMVSALSQSGRVREA 254

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L+++  M+++   LDS      L AC+ + +L+ GK++H   +R        V +AL+ +
Sbjct: 255 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVEL 314

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y++    + A  +F    +++ + W  ++SG+    C  ES  LF +M    +  +   +
Sbjct: 315 YAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFAL 374

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           A+++  C    +L  G++ H   L+     + +++ NSL+ MYA+   +  A+++F  M+
Sbjct: 375 ATLISGCCSRMDLCLGRQLHSLCLKSGQI-QAVVVSNSLISMYAKCDNLQSAEAIFRFMN 433

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            +D V++TS+I  Y   G    A + F+ M++  +    +T  A+L A    G   +G +
Sbjct: 434 EKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLR 489

Query: 535 QFERMTSIYGIFPQ 548
            ++ M S   + P 
Sbjct: 490 MYKVMLSEEYVRPD 503



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 128/279 (45%), Gaps = 41/279 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH---IIFCCGKVKALAQGKQLHACAIAL 103
           F   G  +++ E F ++R    +  + LD FA    I  CC ++  L  G+QLH+  +  
Sbjct: 346 FLQYGCFTESVELFNQMR----AELMTLDQFALATLISGCCSRMD-LCLGRQLHSLCLKS 400

Query: 104 GLEKNPVLVPKLVTFYAS----------FSLYNNACFLVENSNI---------------- 137
           G  +  V+   L++ YA           F   N    +   S I                
Sbjct: 401 GQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFF 460

Query: 138 -----RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDV 191
                +  + WN ++  Y++ G   + L +YK M S   +R D  TY ++ K C ++   
Sbjct: 461 DGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGAN 520

Query: 192 DFG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G +++   +         V NA+++MY K G++  AR++FD +  +D VSWN MI+ Y
Sbjct: 521 KLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGY 580

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +  G+ K+A ++F ++ + G + + I++  +  GC  +G
Sbjct: 581 SQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 619



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 3/169 (1%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  + A   G Q+    + +GL  +  +   ++T Y+       A  + +  N++  + W
Sbjct: 514 CADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSW 573

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+ Y + G   +A+ ++  +  R  + D  +Y +VL  C     V  G+     +  
Sbjct: 574 NAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKR 633

Query: 204 CHEWS--LFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            H  S  L   + +V + G+ G +  A+ L D M ++  A  W  ++SA
Sbjct: 634 AHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSA 682


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 197/616 (31%), Positives = 312/616 (50%), Gaps = 38/616 (6%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           Q++   I  GL K   L+ K +     F   N A       +    L WN +I  Y +  
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHN 213
                + +Y  MQ  ++  + FT+  VLKACG       G+ +H          ++FV N
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 124

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           +LVSMY KFGQ+  AR +FDK+ +R  VSW ++IS Y   G   EA  +F EM++  V+ 
Sbjct: 125 SLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKP 184

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                                              D +A V  + A ++V  L  GK IH
Sbjct: 185 -----------------------------------DWIALVSVMTAYTNVEDLGQGKSIH 209

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
           G   +       ++  +L TMY++   +  A   F    + ++I WN+M+SGY +    E
Sbjct: 210 GLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGE 269

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LFREM    +  + +T+ S +   A+V +L+  +    YI  ++ + +   +   L
Sbjct: 270 EAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYI-SKSEYRDDTFVNTGL 328

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MYA+ G +  A+ VFD ++ +D V ++ +I GYG+ G G+ A+ L+ EM +  + P+ 
Sbjct: 329 IDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPND 388

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
            T + +L+AC +SGLV EG + F  M   +GI P  +H++C+VDL GRAG LN+A + I 
Sbjct: 389 GTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIM 447

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
            MP  P  ++W  LL AC+IHR   +GE AAE+L    P N+G+YV ++N+YA+   W +
Sbjct: 448 SMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTR 507

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           +A VR  M   G+ K  G + ++       F V D S+ +++EI+  L  L + +K AGY
Sbjct: 508 VANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGY 567

Query: 694 VVKEEFCSEEEIVEEI 709
           V   E    +   EEI
Sbjct: 568 VPHMESVLHDLNHEEI 583



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 185/393 (47%), Gaps = 39/393 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F +++  CG       GKQ+H      G   N  +   LV+ YA F   + A  + +  
Sbjct: 87  TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 146

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  + W  +IS YV++G   EAL V+K+M+   ++ D     SV+ A   + D+  G+
Sbjct: 147 HDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGK 206

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  +     E+   +  +L +MY K G V+VAR  F++M + + + WN MIS YA+ G
Sbjct: 207 SIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNG 266

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA +LF EM  + + V+ IT                       MR+           
Sbjct: 267 YGEEAIKLFREMITKNIRVDSIT-----------------------MRS----------- 292

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + A + VG+L+L + + G   +  Y +   V   LI MY++C  +  A  +F   A+K
Sbjct: 293 -AVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADK 351

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE-F 433
            ++ W+ M+ GY      +E+  L+ EM ++GV PN  T   +L  C     ++ G E F
Sbjct: 352 DVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELF 411

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           H  ++       H   ++ +V++  R+G + +A
Sbjct: 412 H--LMPDHGIEPHHQHYSCVVDLLGRAGYLNQA 442



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 122/259 (47%), Gaps = 3/259 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G+  +A   F  +R      D +  +   ++     V+ L QGK +H     L
Sbjct: 158 ISGYVQNGDPMEALNVFKEMRQCNVKPDWI--ALVSVMTAYTNVEDLGQGKSIHGLVTKL 215

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE  P +V  L T YA   L   A F          + WN +IS Y  +G+  EA+ ++
Sbjct: 216 GLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLF 275

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKF 222
           ++M ++ IR D+ T  S + A  ++  ++  R +   I    +    FV+  L+ MY K 
Sbjct: 276 REMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKC 335

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G + +AR +FD++ ++D V W+ MI  Y   G  +EA  L+ EM++ GV  N  T+  + 
Sbjct: 336 GSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLL 395

Query: 283 GGCLRTGNFKGVLELLSRM 301
             C  +G  K   EL   M
Sbjct: 396 TACKNSGLVKEGWELFHLM 414


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 198/621 (31%), Positives = 313/621 (50%), Gaps = 38/621 (6%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L    Q++   I  GL K   L+ K +     F   N A       +    L WN +I  
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWS 208
           Y +       + +Y  MQ  ++  + FT+  VLKACG       G+ +H          +
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +FV N+LVSMY KFGQ+  AR +FDK+ +R  VSW ++IS Y   G   EA  +F EM++
Sbjct: 135 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 194

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
             V+                                    D +A V  + A ++V  L  
Sbjct: 195 CNVKP-----------------------------------DWIALVSVMTAYTNVEDLGQ 219

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           GK IHG   +       ++  +L TMY++   +  A   F    + ++I WN+M+SGY +
Sbjct: 220 GKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYAN 279

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               EE+  LFREM    +  + +T+ S +   A+V +L+  +    YI  ++ + +   
Sbjct: 280 NGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYI-SKSEYRDDTF 338

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           +   L++MYA+ G +  A+ VFD ++ +D V ++ +I GYG+ G G+ A+ L+ EM +  
Sbjct: 339 VNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAG 398

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
           + P+  T + +L+AC +SGLV EG + F  M   +GI P  +H++C+VDL GRAG LN+A
Sbjct: 399 VCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQA 457

Query: 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
            + I  MP  P  ++W  LL AC+IHR   +GE AAE+L    P N+G+YV ++N+YA+ 
Sbjct: 458 YDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASA 517

Query: 629 GCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
             W ++A VR  M   G+ K  G + ++       F V D S+ +++EI+  L  L + +
Sbjct: 518 HLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRL 577

Query: 689 KDAGYVVKEEFCSEEEIVEEI 709
           K AGYV   E    +   EEI
Sbjct: 578 KAAGYVPHMESVLHDLNHEEI 598



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 185/393 (47%), Gaps = 39/393 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F +++  CG       GKQ+H      G   N  +   LV+ YA F   + A  + +  
Sbjct: 102 TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 161

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  + W  +IS YV++G   EAL V+K+M+   ++ D     SV+ A   + D+  G+
Sbjct: 162 HDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGK 221

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  +     E+   +  +L +MY K G V+VAR  F++M + + + WN MIS YA+ G
Sbjct: 222 SIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNG 281

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA +LF EM  + + V+ IT                       MR+           
Sbjct: 282 YGEEAIKLFREMITKNIRVDSIT-----------------------MRS----------- 307

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + A + VG+L+L + + G   +  Y +   V   LI MY++C  +  A  +F   A+K
Sbjct: 308 -AVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADK 366

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE-F 433
            ++ W+ M+ GY      +E+  L+ EM ++GV PN  T   +L  C     ++ G E F
Sbjct: 367 DVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELF 426

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           H  ++       H   ++ +V++  R+G + +A
Sbjct: 427 H--LMPDHGIEPHHQHYSCVVDLLGRAGYLNQA 457



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 122/259 (47%), Gaps = 3/259 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G+  +A   F  +R      D +  +   ++     V+ L QGK +H     L
Sbjct: 173 ISGYVQNGDPMEALNVFKEMRQCNVKPDWI--ALVSVMTAYTNVEDLGQGKSIHGLVTKL 230

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE  P +V  L T YA   L   A F          + WN +IS Y  +G+  EA+ ++
Sbjct: 231 GLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLF 290

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKF 222
           ++M ++ IR D+ T  S + A  ++  ++  R +   I    +    FV+  L+ MY K 
Sbjct: 291 REMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKC 350

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G + +AR +FD++ ++D V W+ MI  Y   G  +EA  L+ EM++ GV  N  T+  + 
Sbjct: 351 GSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLL 410

Query: 283 GGCLRTGNFKGVLELLSRM 301
             C  +G  K   EL   M
Sbjct: 411 TACKNSGLVKEGWELFHLM 429


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 184/612 (30%), Positives = 313/612 (51%), Gaps = 53/612 (8%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYA---SFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           K++HA  I   L  +  + PKL++ ++     +L  N    +++ N+     +N LI  +
Sbjct: 40  KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHL---YNTLIRAH 96

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SL 209
           V++    +A   +  MQ   +  DNFTYP +LKAC     +   +++H  ++    +  L
Sbjct: 97  VQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDL 156

Query: 210 FVHNALVSMYGKFG--QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           FV N+L+  Y K G   V+ A +LF +M E+D VSWN+MI      G    A +LF EM 
Sbjct: 157 FVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMA 216

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           E     + ++WNTI  G ++ G       L  +M   E  + S +T              
Sbjct: 217 ER----DAVSWNTILDGYVKAGEMSQAFNLFEKM--PERNVVSWST-------------- 256

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
                                  +++ Y +  D+  A +LF     K+++TW  ++SG+ 
Sbjct: 257 -----------------------MVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFA 293

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
               A+E+  L+ +M  +G++P+  T+ SIL  CA    L  GK+ H  I ++      +
Sbjct: 294 EKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASI-KKIRIKCSV 352

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + N+LV+MYA+ G+V +A S+F+ MS RD V++  ++ G  + G G  A++LF +M + 
Sbjct: 353 NVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQE 412

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
             KPD VT++A+L AC+H+G V +G   F  M   +GI P +EH+ CM+DL GR G L +
Sbjct: 413 GFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEE 472

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A  ++  MP  P   +W TLLGAC++H    + E   ++L+     + G Y +++N++AA
Sbjct: 473 AFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAA 532

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
            G W+ +A +R  M+  GV+K  G + ++  +    F V D S+ +  +IY +L  L + 
Sbjct: 533 AGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFTVFDKSHPETDKIYQILVKLGQD 592

Query: 688 MKDAGYVVKEEF 699
           +K   Y  + + 
Sbjct: 593 LKQVAYAPEADL 604



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 5/206 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA +G   +A   + ++       D    +   I+  C +   L  GK++HA    + ++
Sbjct: 292 FAEKGLAKEATTLYNQMEAAGLKPDD--GTLISILAACAESGLLVLGKKVHASIKKIRIK 349

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LV  YA     + A  +    ++R  + WN ++      G   +A+ ++ +M
Sbjct: 350 CSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKM 409

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV--HNALVSMYGKFGQ 224
           Q    + D  T  ++L AC     VD G    + ++  H     +  +  ++ + G+ G+
Sbjct: 410 QQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGR 469

Query: 225 VDVARRLFDKM-LERDAVSWNTMISA 249
           ++ A RL   M +E + V W T++ A
Sbjct: 470 LEEAFRLVQSMPMEPNDVIWGTLLGA 495


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 202/669 (30%), Positives = 321/669 (47%), Gaps = 48/669 (7%)

Query: 33  EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQ 92
           EH   ++    +  FA  G+  +A   + R+ +     D  +  F   I  C   K L Q
Sbjct: 19  EHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM--FVVAIGVCSSSKDLKQ 76

Query: 93  GKQLHACAIALGL-EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           G+ LHA  +   L E + +L   L+T YA       A    +    +  + WN LI+ Y 
Sbjct: 77  GQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYS 136

Query: 152 RDGFYAEALCVYKQMQSRRIRG---DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
           R+G +  AL +Y+ M S+   G   D  T+ S L AC  + D+  GR + +  + + +  
Sbjct: 137 RNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYAS 196

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
              V NAL++MY K G ++ AR++FD++  RD                            
Sbjct: 197 DSIVQNALINMYSKCGSLESARKVFDRLKNRD---------------------------- 228

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                  VI WNT+  G  + G     LEL  RM   +   + V  +  L AC+++  L+
Sbjct: 229 -------VIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLE 281

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKD-LRHAYILFKMTAEKSIITWNSMLSGY 386
            G+ IH       Y     + N L+ MY++C   L  A  +F+    + +ITWN ++  Y
Sbjct: 282 QGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAY 341

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                A+++  +F++M    V PN +T++++L  CA +   + GK  H  I         
Sbjct: 342 VQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIAS-GRCKAD 400

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           ++L NSL+ MY R G + +   VF  +  +  V++++LIA Y   G  R  L+ F E+ +
Sbjct: 401 VVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQ 460

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             +  D VTMV+ LSACSH G++ EG + F  M   +G+ P   HF CMVDL  RAG L 
Sbjct: 461 EGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLE 520

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV-LIANMY 625
            A+ +I  MP+ P +  W +LL  C++H +T      A+KL E   E+    V L++N+Y
Sbjct: 521 AAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVY 580

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           A  G WD + K R        RK PGC++++  +    F+  D S+ + + I   +  L+
Sbjct: 581 AEAGRWDDVRKTRN---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLS 637

Query: 686 ELMKDAGYV 694
           + MKDAGYV
Sbjct: 638 KQMKDAGYV 646



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 179/363 (49%), Gaps = 42/363 (11%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MYGK G V  A  +F  +   ++VSW  +++A+A  G ++EA   +  M  EG+      
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRP---- 56

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
                                          D    V+ +G CS    LK G+ +H   +
Sbjct: 57  -------------------------------DGAMFVVAIGVCSSSKDLKQGQLLHAMIL 85

Query: 338 RGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
                E++ +   ALITMY+RC+DL  A   F    +K+++TWN++++GY+       + 
Sbjct: 86  ETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGAL 145

Query: 397 FLFREMFRS---GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
            ++++M      G++P+ +T +S L  C+ V ++  G+E     +     ++  ++ N+L
Sbjct: 146 KIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDS-IVQNAL 204

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MY++ G +  A+ VFD +  RD + + ++I+GY  QG    AL+LF+ M  N  KP+ 
Sbjct: 205 INMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNV 264

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR-AGLLNKAKEII 572
           VT + +L+AC++   + +G +   R    +G    L     ++++Y + +  L +A+++ 
Sbjct: 265 VTFIGLLTACTNLEDLEQG-RAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVF 323

Query: 573 TKM 575
            ++
Sbjct: 324 ERL 326



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 116/238 (48%), Gaps = 5/238 (2%)

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY +C  +  A  +F      + ++W  +++ +       E+   +R M   G+ P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
               + +C+   +L+ G+  H  IL   +    ++L  +L+ MYAR   +  A+  FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEM---NKNQIKPDHVTMVAVLSACSHSGLVV 530
            ++  VT+ +LIAGY   G+ R ALK++++M   +   +KPD +T  + L ACS  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           +G ++ E  T   G          ++++Y + G L  A+++  ++      A W T++
Sbjct: 181 QG-REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIA-WNTMI 236


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 225/710 (31%), Positives = 349/710 (49%), Gaps = 26/710 (3%)

Query: 11  NGLSVSQLE-KFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAAS 69
           N L V+ L+   +P  +K  +       ++    +  FA      +A E F R+R    S
Sbjct: 109 NALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMR----S 164

Query: 70  HDVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127
             + L+  SF  I+  C ++  L  G QLHA  I +G      +   L+  Y      ++
Sbjct: 165 SGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDS 224

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG---DNFTYPSVLKA 184
              L +    R    WN +IS  V++  Y  A  +++ M  RRI G   D+FT  ++L A
Sbjct: 225 VLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDM--RRIDGFRIDHFTLSTILVA 282

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSW 243
              +  +  GR +H+  I    E ++ V NAL+  Y K G +     LF+KM  RD ++W
Sbjct: 283 ARGLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITW 341

Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
             MI+AY   GL   A ++F +M       N I++N I  G  + G     L    RM  
Sbjct: 342 TEMITAYMEFGLTDLALEVFDKMPAR----NSISYNAILSGFCQNGEGSKALAFFCRMVE 397

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
           +   L        L AC  +   K+ K+IHG  ++  +G    +  AL+ M +RC  +  
Sbjct: 398 EGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMAD 457

Query: 364 AYILFKMTAEKSI--ITWNSMLSGYTHLDCAEESAFLF-REMFRSGVEPNYVTIASILPL 420
           A  +F   +      I W SM+ GY      EE+  LF +      +  + V   ++L +
Sbjct: 458 AQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGV 517

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           C  +A  + GK+ HC+ L+    ++ L + NS++ MY++   + +A  VF++M   D V+
Sbjct: 518 CGTLAFHEMGKQIHCHALKSGFLSD-LGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVS 576

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH--SGLVVEGQKQFER 538
           +  LIAG+ +  +G  AL ++ +M K  IKPD VT V ++SA  H  S LV   ++ F  
Sbjct: 577 WNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLS 636

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
           M +IY I P +EH+  +V + G  GLL +A+E+I KMP  P +++W  LL AC+IH NT 
Sbjct: 637 MKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTT 696

Query: 599 IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
           IG+ AA+ LL  +P +   Y+L++N+Y+A G W     VR  MR  G RK PG +W+   
Sbjct: 697 IGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHE 756

Query: 659 NVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           N    F   D S+ QA++I+  L  L      AGYV    F   E  VEE
Sbjct: 757 NKVHSFYARDKSHPQAKDIHSGLELLIMECLKAGYVPDTSFVLHE--VEE 804



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 135/297 (45%), Gaps = 33/297 (11%)

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           ++L K +H S  +    E  ++ NALI  Y +   + +AY +F   +  +++++ +M+SG
Sbjct: 88  VELIKAVHASIFK--LAEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISG 145

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           +   +   ++  +F  M  SG+E N  +  +IL +C R+ +L+ G + H  +++    N 
Sbjct: 146 FAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLN- 204

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           +  + N+L+ +Y + G +     +FD M  RD  ++ ++I+    +     A +LF +M 
Sbjct: 205 YTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMR 264

Query: 506 K-NQIKPDHVTMVAVLSACS----------HSGLVVEGQKQ-----------FERMTSIY 543
           + +  + DH T+  +L A            H+ ++  G +            + +  SI 
Sbjct: 265 RIDGFRIDHFTLSTILVAARGLASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIK 324

Query: 544 GIFPQLEHFAC--------MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            +    E            M+  Y   GL + A E+  KMP   + +  A L G CQ
Sbjct: 325 HVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQ 381


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 170/538 (31%), Positives = 290/538 (53%), Gaps = 43/538 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           Y  +LK C  +  V+ GR+VH+ +   H  +  L + N +V+MY K G +D ARR+FD+M
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             +D V+W  +I+ ++     ++A  LF +M   G + N  T +++              
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSL-------------- 195

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                                L A      L  G ++H   ++  Y     V +AL+ MY
Sbjct: 196 ---------------------LKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMY 234

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           +RC  +  A + F     KS ++WN+++SG+      E +  L  +M R   +P + T +
Sbjct: 235 ARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYS 294

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           S+L  CA +  L+ GK  H ++++  +      + N+L++MYA++G + +AK VFD + +
Sbjct: 295 SVLSACASIGALEQGKWVHAHMIKSGL-KLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVK 353

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
            D V++ +++ G    G G+  L  FE+M +  I+P+ ++ + VL+ACSHSGL+ EG   
Sbjct: 354 PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYY 413

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           FE M   Y + P + H+   VDL GR GLL++A+  I +MP  PT+A+W  LLGAC++H+
Sbjct: 414 FELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHK 472

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  +G +AAE+  E  P +SG  +L++N+YA+ G W  +AKVR  M++ GV+K P C+WV
Sbjct: 473 NMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWV 532

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEE----FCSEEEIVEEI 709
           +  N    F+ +D ++ + +EI      ++  +K+ GYV        F  ++E  E++
Sbjct: 533 EIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKL 590



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 182/401 (45%), Gaps = 54/401 (13%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAI-ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++ ++  C ++  + QG+ +HA  + +  L+ + VL   +V  YA     ++A  + +  
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + W  LI+ + ++    +AL ++ QM     + ++FT  S+LKA G    +D G 
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGT 209

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+ C+   ++ S++V +ALV MY + G +D A+  FD M  +  VSWN +IS +A KG
Sbjct: 210 QLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKG 269

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             + A  L  +MQ +  +    T++++                                 
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSV--------------------------------- 296

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +GAL+ GK +H   ++        + N L+ MY++   +  A  +F    + 
Sbjct: 297 --LSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKP 354

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +++WN+ML+G       +E+   F +M R G+EPN ++   +L  C+    L  G    
Sbjct: 355 DVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEG---- 410

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
                        L +  L++ Y     VP   +  DL+ R
Sbjct: 411 -------------LYYFELMKKYKVEPDVPHYVTFVDLLGR 438



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 1/215 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + + ++   G    L  G QLHA  +  G + +  +   LV  YA     + A    +  
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN LIS + R G    AL +  +MQ +  +  +FTY SVL AC  +  ++ G+
Sbjct: 251 PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGK 310

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  I +  +   F+ N L+ MY K G +D A+R+FD++++ D VSWNTM++  A  G
Sbjct: 311 WVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHG 370

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           L KE    F +M   G+E N I++  +   C  +G
Sbjct: 371 LGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSG 405



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 7/212 (3%)

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           R  + P+Y   + +L  C R+  ++ G+  H +++     + HL+L N +V MYA+ G +
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCL 139

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +A+ +FD M  +D VT+T+LIAG+      R AL LF +M +   +P+H T+ ++L A 
Sbjct: 140 DDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKAS 199

Query: 524 -SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
            S  GL  +   Q       YG    +   + +VD+Y R G ++ A+     MP T +  
Sbjct: 200 GSEHGL--DPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMP-TKSEV 256

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
            W  L+     H   G GE A   L + + +N
Sbjct: 257 SWNALISG---HARKGEGEHALHLLWKMQRKN 285



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 91/233 (39%), Gaps = 36/233 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +++ ++  C  + AL QGK +HA  I  GL+    +   L+  YA     ++A  + +  
Sbjct: 292 TYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL 351

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + WN +++   + G   E L  ++QM    I  +  ++  VL AC     +D G 
Sbjct: 352 VKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGL 411

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---- 249
                +     E  +  +   V + G+ G +D A R   +M +E  A  W  ++ A    
Sbjct: 412 YYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMH 471

Query: 250 ------------------------------YASKGLWKEAFQLFVEMQEEGVE 272
                                         YAS G W++  ++   M+E GV+
Sbjct: 472 KNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVK 524


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 202/669 (30%), Positives = 321/669 (47%), Gaps = 48/669 (7%)

Query: 33  EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQ 92
           EH   ++    +  FA  G+  +A   + R+ +     D  +  F   I  C   K L Q
Sbjct: 19  EHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM--FVVAIGVCSSSKDLKQ 76

Query: 93  GKQLHACAIALGL-EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           G+ LHA  +   L E + +L   L+T YA       A    +    +  + WN LI+ Y 
Sbjct: 77  GQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYS 136

Query: 152 RDGFYAEALCVYKQMQSRRIRG---DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEW 207
           R+G +  AL +Y+ M S+   G   D  T+ S L AC  + D+  GR + +  + + +  
Sbjct: 137 RNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYAS 196

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
              V NAL++MY K G ++ AR++FD++  RD                            
Sbjct: 197 DSIVQNALINMYSKCGSLESARKVFDRLKNRD---------------------------- 228

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
                  VI WNT+  G  + G     LEL  RM   +   + V  +  L AC+++  L+
Sbjct: 229 -------VIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLE 281

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKD-LRHAYILFKMTAEKSIITWNSMLSGY 386
            G+ IH       Y     + N L+ MY++C   L  A  +F+    + +ITWN ++  Y
Sbjct: 282 QGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAY 341

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                A+++  +F++M    V PN +T++++L  CA +   + GK  H  I         
Sbjct: 342 VQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIAS-GRCKAD 400

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           ++L NSL+ MY R G + +   VF  +  +  V++++LIA Y   G  R  L+ F E+ +
Sbjct: 401 VVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQ 460

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
             +  D VTMV+ LSACSH G++ EG + F  M   +G+ P   HF CMVDL  RAG L 
Sbjct: 461 EGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLE 520

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV-LIANMY 625
            A+ +I  MP+ P +  W +LL  C++H +T      A+KL E   E+    V L++N+Y
Sbjct: 521 AAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVY 580

Query: 626 AATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685
           A  G WD + K R        RK PGC++++  +    F+  D S+ + + I   +  L+
Sbjct: 581 AEAGRWDDVRKTRN---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLS 637

Query: 686 ELMKDAGYV 694
           + MKDAGYV
Sbjct: 638 KQMKDAGYV 646



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 177/363 (48%), Gaps = 42/363 (11%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MYGK G V  A  +F  +   ++VSW  +++A+A  G ++EA   +  M  EG+      
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRP---- 56

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
                                          D    V+ +G CS    LK G+ +H   +
Sbjct: 57  -------------------------------DGAMFVVAIGVCSSSKDLKQGQLLHAMIL 85

Query: 338 RGCYGEYENV-RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
                E++ +   ALITMY+RC+DL  A   F    +K+++TWN++++GY+       + 
Sbjct: 86  ETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGAL 145

Query: 397 FLFREMFRS---GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
            ++++M      G++P+ +T +S L  C  V ++  G+E     +     ++  ++ N+L
Sbjct: 146 KIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDS-IVQNAL 204

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MY++ G +  A+ VFD +  RD + + ++I+GY  QG    AL+LF+ M  N  KP+ 
Sbjct: 205 INMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNV 264

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR-AGLLNKAKEII 572
           VT + +L+AC++   + +G +   R     G    L     ++++Y + +  L +A+++ 
Sbjct: 265 VTFIGLLTACTNLEDLEQG-RAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVF 323

Query: 573 TKM 575
            +M
Sbjct: 324 ERM 326



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 116/238 (48%), Gaps = 5/238 (2%)

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY +C  +  A  +F      + ++W  +++ +       E+   +R M   G+ P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
               + +C+   +L+ G+  H  IL   +    ++L  +L+ MYAR   +  A+  FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEM---NKNQIKPDHVTMVAVLSACSHSGLVV 530
            ++  VT+ +LIAGY   G+ R ALK++++M   +   +KPD +T  + L AC+  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           +G ++ E  T   G          ++++Y + G L  A+++  ++      A W T++
Sbjct: 181 QG-REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIA-WNTMI 236


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 182/621 (29%), Positives = 314/621 (50%), Gaps = 39/621 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I  C     +  G+QLHA  I      +      L++ Y +F    +A  +    
Sbjct: 262 TFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRI 321

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             +  + W  +I+ Y++ G+  EAL +++ + +    + + F + SV  AC  ++++++G
Sbjct: 322 PTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYG 381

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + VH  C+      ++F   +L  MY KFG +  A+  F ++   D              
Sbjct: 382 KQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPD-------------- 427

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
                                +++WN I       G+    ++   +M       DS+  
Sbjct: 428 ---------------------IVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITY 466

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-MTA 372
           +  L  C     L  G++IH   V+  + +   V N+L+TMY++C  L  A  +F+ ++ 
Sbjct: 467 ISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISR 526

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
             ++++WN++LS         E+  L++EM  SG +P+ +TI ++L  CA + +L  G +
Sbjct: 527 NANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQ 586

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HCY ++  +  + + + N L++MYA+ G +  A+ VFD     D V+++SLI GY   G
Sbjct: 587 VHCYSIKSGLILD-VSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCG 645

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G  AL LF  M    ++P+ VT +  LSACSH GLV EG + ++ M + +GI P  EHF
Sbjct: 646 LGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHF 705

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           +C+VDL  RAG L++A+  I K         W TLL AC+ H N  I E  A  +L+  P
Sbjct: 706 SCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDP 765

Query: 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV 672
            NS   V++ N++A+ G W+++AK+R  M+ +GV+K+PG +W++  + F  F  +D+S+ 
Sbjct: 766 SNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIEVKDKFHIFFSEDSSHP 825

Query: 673 QAQEIYPLLGGLTELMKDAGY 693
           Q   IY +L  L   + D GY
Sbjct: 826 QRNLIYTMLEELWSQVLDDGY 846



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 220/471 (46%), Gaps = 48/471 (10%)

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYK-QMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
           SN+   LP N  I    +   Y EAL  +   +++     +  TY S++ AC     +D+
Sbjct: 118 SNLSKELPTNSYIIFLCKQHHYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDY 177

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
            + +H   + + ++ S+ + N +++MYGK G +  AR++FD M   + VSW +MIS Y+ 
Sbjct: 178 AKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQ 237

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G   +A  ++++M                    R+G F   L   S ++          
Sbjct: 238 NGQANDAIIMYIQMT-------------------RSGQFPDQLTFGSVIK---------- 268

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
                 AC   G + LG+++H   ++  +G +   +NALI+MY+    + HA  +F    
Sbjct: 269 ------ACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIP 322

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQHGK 431
            K +I+W +M++GY  L    E+ +LFR++ R G  +PN     S+   C+ +  L++GK
Sbjct: 323 TKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGK 382

Query: 432 EFH--C--YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
           + H  C  + LRR +F        SL +MYA+ G +P AK  F  +   D V++ ++IA 
Sbjct: 383 QVHGMCVKFGLRRNVFAG-----CSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAA 437

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           +   G+   A+  F +M    + PD +T +++L  C     + +G++    +  I G   
Sbjct: 438 FADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKI-GFDK 496

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
           ++     ++ +Y +   L+ A  +   +        W  +L AC   +  G
Sbjct: 497 EITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEG 547



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 150/620 (24%), Positives = 271/620 (43%), Gaps = 87/620 (14%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A EAF      + SH     ++  ++  C   ++L   K++H   +    + + +L   
Sbjct: 141 EALEAFDFHLKNSNSH-FEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNH 199

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           ++  Y       +A  + +   +   + W  +IS Y ++G   +A+ +Y QM       D
Sbjct: 200 MINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPD 259

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
             T+ SV+KAC    D+D GR +H+  I +     L   NAL+SMY  FGQ++ A  +F 
Sbjct: 260 QLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFT 319

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           ++  +D +SW TMI+ Y   G   EA  LF ++                   LR G ++ 
Sbjct: 320 RIPTKDLISWGTMITGYIQLGYRVEALYLFRDL-------------------LRQGTYQ- 359

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN--AL 351
                      E    SV       ACS +  L+ GK++HG  V+  +G   NV    +L
Sbjct: 360 ---------PNEFIFGSV-----FSACSSLLELEYGKQVHGMCVK--FGLRRNVFAGCSL 403

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
             MY++   L  A + F       I++WN++++ +     A E+   FR+M   G+ P+ 
Sbjct: 404 CDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDS 463

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           +T  S+L  C     L  G++ H YI++   F++ + + NSL+ MY +   + +A +VF 
Sbjct: 464 ITYISLLCTCGSPVRLNQGRQIHSYIVKIG-FDKEITVCNSLLTMYTKCSHLHDALNVFR 522

Query: 472 LMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH-SGLV 529
            +SR  + V++ ++++    + +     +L++EM+ +  KPD +T+  +L  C+  + L 
Sbjct: 523 DISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLG 582

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE------------------- 570
           V  Q     + S  G+   +     ++D+Y + G L  A++                   
Sbjct: 583 VGNQVHCYSIKS--GLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVG 640

Query: 571 ---------------IITKMPYTPTSAMWATLLGACQIHRNTGIGE--WAAEKLLETR-- 611
                          I+T +   P    +   L AC    + G+ E  W   K +ET   
Sbjct: 641 YAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACS---HIGLVEEGWRLYKSMETEHG 697

Query: 612 -PENSGYYVLIANMYAATGC 630
            P    ++  I ++ A  GC
Sbjct: 698 IPPTREHFSCIVDLLARAGC 717


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 166/422 (39%), Positives = 243/422 (57%), Gaps = 3/422 (0%)

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
           NV TWNTI  G   + N         +M       D+      L A S    ++ G+ IH
Sbjct: 82  NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIH 141

Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
              +R  +     V+N+L+ +Y+ C D   AY +F++  E+ ++ WNSM++G+       
Sbjct: 142 SVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPN 201

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF-NEHLLLWNS 452
           E+  LFREM   GVEP+  T+ S+L   A +  L+ G+  H Y+L+  +  N H+   NS
Sbjct: 202 EALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVT--NS 259

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L+++YA+ G + EA+ VF  MS R+ V++TSLI G  + G G  AL+LF+EM    + P 
Sbjct: 260 LLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPS 319

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            +T V VL ACSH G++ EG + F RM    GI P++EH+ CMVDL  RAGL+ +A E I
Sbjct: 320 EITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYI 379

Query: 573 TKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632
             MP  P + +W TLLGAC IH + G+GE A   LL   P++SG YVL++N+YA+   W 
Sbjct: 380 QNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWS 439

Query: 633 KLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAG 692
            +  +R  M   GV+K PG + V+ GN    F + D S+ Q+Q++Y LL  +TEL+K  G
Sbjct: 440 DVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEG 499

Query: 693 YV 694
           YV
Sbjct: 500 YV 501



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 187/424 (44%), Gaps = 60/424 (14%)

Query: 82  FCCGKVKALAQGKQLHACAIALGLE-KNPV----LVPKLVTFYASFSLYNNACFLVENSN 136
           FC      L   KQ+HA +I  G+   NP     L+  +V+  A  S   N   ++ N N
Sbjct: 26  FCASSKHKL---KQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPN 82

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           +     WN +I  Y      + A   Y+QM    +  D  TYP +LKA  + ++V  G  
Sbjct: 83  V---FTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEA 139

Query: 197 VHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +HS  I    E  +FV N+L+ +Y   G  +                             
Sbjct: 140 IHSVTIRNGFESLVFVQNSLLHIYAACGDTE----------------------------- 170

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
              A+++F  M+E     +++ WN++  G    G     L L   M  +    D    V 
Sbjct: 171 --SAYKVFELMKER----DLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVS 224

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L A + +GAL+LG+ +H   ++    +  +V N+L+ +Y++C  +R A  +F   +E++
Sbjct: 225 LLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERN 284

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF-- 433
            ++W S++ G       EE+  LF+EM   G+ P+ +T   +L  C+    L  G E+  
Sbjct: 285 AVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFR 344

Query: 434 ----HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGY 488
                C I+ R    EH   +  +V++ +R+G V +A + + ++  + + V + +L+   
Sbjct: 345 RMKEECGIIPRI---EH---YGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGAC 398

Query: 489 GIQG 492
            I G
Sbjct: 399 TIHG 402



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 122/508 (24%), Positives = 215/508 (42%), Gaps = 74/508 (14%)

Query: 30  INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           I+N ++   N +  ++ +A   N S AF  + ++ ++    D    ++  ++    K   
Sbjct: 78  IHNPNVFTWNTI--IRGYAESDNPSPAFLFYRQMVVSCVEPDT--HTYPFLLKAISKSLN 133

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           + +G+ +H+  I  G E    +   L+  YA+     +A  + E    R  + WN +I+ 
Sbjct: 134 VREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMING 193

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWS 208
           +  +G   EAL ++++M    +  D FT  S+L A  E+  ++ GR VH   +      +
Sbjct: 194 FALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKN 253

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
             V N+L+ +Y K G +  A+R+F +M ER+AVSW ++I   A  G  +EA +LF EM+ 
Sbjct: 254 SHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEG 313

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           +G+  + IT             F GVL                       ACSH G L  
Sbjct: 314 QGLVPSEIT-------------FVGVLY----------------------ACSHCGMLDE 338

Query: 329 GKEIHGSAVRGCYGEYENVRN--ALITMYSRCKDLRHAY-ILFKMTAEKSIITWNSMLSG 385
           G E        C G    + +   ++ + SR   ++ AY  +  M  + + + W ++L  
Sbjct: 339 GFEYFRRMKEEC-GIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGA 397

Query: 386 YT---HLDCAE--ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
            T   HL   E   S  L  E   SG   +YV ++++     R +++Q        ++RR
Sbjct: 398 CTIHGHLGLGEIARSHLLNLEPKHSG---DYVLLSNLYASERRWSDVQ--------VIRR 446

Query: 441 AMFNEHLL---------LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           +M  + +          L N + E        P+++ V+ L+ +      T L+   G  
Sbjct: 447 SMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEK-----ITELLKLEGYV 501

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAV 519
                 L   EE  K Q    H   VA+
Sbjct: 502 PHTANVLADIEEEEKEQALSYHSEKVAI 529


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 190/608 (31%), Positives = 315/608 (51%), Gaps = 53/608 (8%)

Query: 105 LEKNPVLVPK--------LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           L+ NP   P+        L+  Y    L   AC L      R  + W  +I  +     Y
Sbjct: 31  LQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHY 90

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNA 214
            +A  ++ +M    ++ + FT  SVLKAC  M  +  G + HS +   H  + S++V NA
Sbjct: 91  HQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHS-LATKHGIDRSVYVQNA 149

Query: 215 LVSMYG-KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           L+ MY      +D A  +F+ +  + AVSW T+I+ +                       
Sbjct: 150 LLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTH--------------------- 188

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                        R   + G+L    +M  ++   +S +  I   AC+ + +   GK+IH
Sbjct: 189 -------------RGDGYSGLLAF-RQMLLEDVGPNSFSFSIAARACASISSYSCGKQIH 234

Query: 334 GSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
            +  +  YG + +  V N+++ MY RC  L  A   F    EK++ITWN++++GY   D 
Sbjct: 235 AAVTK--YGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSD- 291

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
           + ES  LF +M   G +PN  T  SI   CA +A L  G++ H  I+RR  F++++ L N
Sbjct: 292 SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRG-FDKNVALIN 350

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL++MYA+ G + ++  +F  M  RD V++T+++ GYG  G G+ A+KLF+EM ++ I+P
Sbjct: 351 SLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQP 410

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D +  + VL  CSH+GLV +G K F  M   Y I P  E + C+VDL GRAG + +A ++
Sbjct: 411 DRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQL 470

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           +  MP+ P  ++W  LLGAC+ ++ + +G  AA+++L+ RP  +G Y+L++ +YAA G W
Sbjct: 471 VENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKW 530

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
            + AK+R  M+ +  +K  G +W++  N    F+V        + ++ ++  L   MKD 
Sbjct: 531 GEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKDD 590

Query: 692 GYVVKEEF 699
           G V   ++
Sbjct: 591 GDVTDLDY 598



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 201/433 (46%), Gaps = 48/433 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY-ASFSLYNNACFLVEN 134
           + + ++  C  +KAL+ G   H+ A   G++++  +   L+  Y AS +  ++A  +  +
Sbjct: 111 TMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFND 170

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             ++  + W  LI+ +   G     L  ++QM    +  ++F++    +AC  +     G
Sbjct: 171 IPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCG 230

Query: 195 RVVHSCIDACHEWSLF----VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           + +H+   A  ++ L     V N+++ MY +   +  A+R F ++ E++ ++WNT+I+ Y
Sbjct: 231 KQIHA---AVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY 287

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
             +    E+  LF +M  EG + N  T+ +I                             
Sbjct: 288 -ERSDSSESLSLFFQMGSEGYKPNCFTFTSIT---------------------------- 318

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                   AC+++  L  G+++HG  VR  + +   + N+LI MY++C  +  ++ LF  
Sbjct: 319 -------AACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCD 371

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              + +++W +M+ GY      +E+  LF EM +SG++P+ +    +L  C+    +  G
Sbjct: 372 MPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKG 431

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIA--- 486
            ++   +L     N    ++  +V++  R+G+V EA  + + M    DE  + +L+    
Sbjct: 432 LKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACK 491

Query: 487 GYGIQGEGRVALK 499
            Y +   G +A +
Sbjct: 492 AYKLSNLGNLAAQ 504



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 132/275 (48%), Gaps = 23/275 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFC--CGKVKALAQGKQLHACAIALG 104
           F  RG+      AF ++ +     DV  +SF+  I    C  + + + GKQ+HA     G
Sbjct: 186 FTHRGDGYSGLLAFRQMLL----EDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYG 241

Query: 105 LEKNPVLVPKLVTFYASFSLYNNA--CF--LVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           L  +  ++  ++  Y   +   +A  CF  L E + I     WN LI+ Y R    +E+L
Sbjct: 242 LHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLIT----WNTLIAGYERSD-SSESL 296

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMY 219
            ++ QM S   + + FT+ S+  AC  +  +  G+ VH  I     + ++ + N+L+ MY
Sbjct: 297 SLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMY 356

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G +  + +LF  M  RD VSW TM+  Y + G  KEA +LF EM + G++ + I + 
Sbjct: 357 AKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFM 416

Query: 280 TIAGGCLRTG-------NFKGVLELLSRMRTQETY 307
            +  GC   G        F+ +LE  +    QE Y
Sbjct: 417 GVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIY 451


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 196/607 (32%), Positives = 312/607 (51%), Gaps = 42/607 (6%)

Query: 93  GKQLHACAIALGLEKNP-VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           G+ +HA  I   +   P  L   LV  Y+   L N+A  ++  +++R  + W  LIS  V
Sbjct: 25  GRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCV 84

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
            +  +  AL  +  M+   ++ ++FT+P V KA   +     G+ +H   +     + +F
Sbjct: 85  HNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVF 144

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V  +   MY K G    A  +FD+M +R+  +WN  IS         +A   F E     
Sbjct: 145 VGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVH 204

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
            E N IT+                                      L AC  +  L LG+
Sbjct: 205 GEPNSITFCAF-----------------------------------LNACVDMVRLNLGR 229

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSMLSGYTHL 389
           ++H   VR  Y E  +V N LI  Y +C D+  A ++F ++   K++++W SML+     
Sbjct: 230 QLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQN 289

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              E +  +F +  R  VEP    I+S+L  CA +  L+ G+  H   ++ A   +++ +
Sbjct: 290 HEEERACMVFLQA-RKEVEPTDFMISSVLSACAELGGLELGRSVHALAVK-ACVEDNIFV 347

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN--KN 507
            ++LV+MY + G +  A+ VF  +  R+ VT+ ++I GY  QG+  +AL+LFEEM    +
Sbjct: 348 GSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSH 407

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            I+P +VT++++LS CS  G V  G + FE M   YGI P  EHFAC+VDL GR+GL+++
Sbjct: 408 GIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDR 467

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A E I  M   PT ++W  LLGAC++H  T +G+ AAEKL E    +SG +V+++NM A+
Sbjct: 468 AYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLAS 527

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687
            G W++   VR  M+D+G++K  G +W+   N    F   D+S+ +  EI  +LG L   
Sbjct: 528 AGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGG 587

Query: 688 MKDAGYV 694
           MK+AGYV
Sbjct: 588 MKEAGYV 594



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 203/440 (46%), Gaps = 63/440 (14%)

Query: 83  CCGKVKALAQ----GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIR 138
           C  K  A  Q    GKQ+H  A+  G+  +  +       Y       +AC + +    R
Sbjct: 113 CVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQR 172

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
               WN  IS  V+D    +A+  +K+        ++ T+ + L AC +M+ ++ GR +H
Sbjct: 173 NLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLH 232

Query: 199 SCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGLW 256
           + I  C ++  + V N L+  YGK G +  A  +F+++  R + VSW +M++A       
Sbjct: 233 AFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEE 292

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           + A  +F++ ++E                               +   +  + SV     
Sbjct: 293 ERACMVFLQARKE-------------------------------VEPTDFMISSV----- 316

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L AC+ +G L+LG+ +H  AV+ C  +   V +AL+ MY +C  + +A  +F    E+++
Sbjct: 317 LSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNL 376

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMF--RSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           +TWN+M+ GY H    + +  LF EM     G+ P+YVT+ SIL +C+RV  ++ G +  
Sbjct: 377 VTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQ-- 434

Query: 435 CYILRRAMFN-------EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSLIA 486
             I      N       EH   +  +V++  RSG V  A      M+ +  ++ + +L+ 
Sbjct: 435 --IFESMRLNYGIEPGAEH---FACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLG 489

Query: 487 GYGIQGE---GRVAL-KLFE 502
              + G+   G++A  KLFE
Sbjct: 490 ACRMHGKTELGKIAAEKLFE 509



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN- 134
           +F   +  C  +  L  G+QLHA  +  G +++  +   L+ FY       +A  +    
Sbjct: 211 TFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRI 270

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
            N +  + W  +++  V++     A  V+ Q + + +   +F   SVL AC E+  ++ G
Sbjct: 271 GNRKNVVSWCSMLAALVQNHEEERACMVFLQAR-KEVEPTDFMISSVLSACAELGGLELG 329

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R VH+  + AC E ++FV +ALV MYGK G ++ A ++F ++ ER+ V+WN MI  YA +
Sbjct: 330 RSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQ 389

Query: 254 GLWKEAFQLFVEMQ--EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           G    A +LF EM     G+  + +T  +I   C R G  +  +++   MR
Sbjct: 390 GDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMR 440


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 192/626 (30%), Positives = 311/626 (49%), Gaps = 85/626 (13%)

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
           ++A  L ++   R  + WN+++S   + G   EAL +   MQS+ +R D+ TY S L AC
Sbjct: 241 DHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTAC 300

Query: 186 GEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
             +  + +G+ +H+  I        +V +ALV +Y K                       
Sbjct: 301 ARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAK----------------------- 337

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
                    G +KEA  +F  + +     N + W  +  G L+ G F   +EL ++MR +
Sbjct: 338 --------SGCFKEAKGVFNSLHDR----NNVAWTVLISGFLQYGCFTESVELFNQMRAE 385

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
              LD  A    +  C     L LG+++H   ++    +   V N+LI+MY++C +L+ A
Sbjct: 386 LMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 445

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             +F+   EK I++W SM++ Y+ +    ++    RE F    E N +T  ++L      
Sbjct: 446 EAIFRFMNEKDIVSWTSMITAYSQVGNVAKA----REFFDGMSEKNVITWNAMLG----- 496

Query: 425 ANLQHGKEFHCYILRRAMFNEHLL------------------------------------ 448
           A +QHG E     + + M +E  +                                    
Sbjct: 497 AYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLI 556

Query: 449 ----LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
               + N+++ MY++ G++ EA+ VFD ++ +D V++ ++I GY   G G+ A+++F+++
Sbjct: 557 IDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDI 616

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            K   KPD+++ VAVLS CSHSGLV EG+  F+ M   + I P LEHF+CMVDL GRAG 
Sbjct: 617 LKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGH 676

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L +AK++I  MP  PT+ +W  LL AC+IH N  + E AA+ + E    +SG Y+L+A +
Sbjct: 677 LTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKI 736

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           YA  G  D  A++R  MRD G++K PG +W++  N    F  DD S+ Q   I   L  L
Sbjct: 737 YADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDEL 796

Query: 685 TELMKDAGYVVKEEFCSEEEIVEEIG 710
            E +   GYV  +   SE    E++ 
Sbjct: 797 MEKIARLGYVRTDSTRSEIHHSEKLA 822



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 225/487 (46%), Gaps = 29/487 (5%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           + +  AS   + ++  H    CG   AL+  ++L    IA     N +    ++  YA  
Sbjct: 51  VAVGLASAVFLQNTLLHAYLSCG---ALSDARRLLLMDIA---HPNVITHNVMLNGYAKL 104

Query: 123 SLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN----FTY 178
              ++A  L      R    WN L+S Y +   Y  +L  +  M      GD+    FT 
Sbjct: 105 GRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRS---GDSWPNAFTL 161

Query: 179 PSVLKACGEM----MDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
              +K+CG +    + +    +V    D+  +    V  ALV M+ + G VD+A RLF +
Sbjct: 162 ACAMKSCGALGWHSLALQLLAMVQK-FDSQDDSE--VAAALVDMFVRCGAVDLASRLFVR 218

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           + E      N+M++ Y        A +LF  M E     +V++WN +     ++G  +  
Sbjct: 219 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER----DVVSWNMMVSALSQSGRVREA 274

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           L+++  M+++   LDS      L AC+ + +L+ GK++H   +R        V +AL+ +
Sbjct: 275 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVEL 334

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y++    + A  +F    +++ + W  ++SG+    C  ES  LF +M    +  +   +
Sbjct: 335 YAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFAL 394

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           A+++  C    +L  G++ H   L+     + +++ NSL+ MYA+   +  A+++F  M+
Sbjct: 395 ATLISGCCSRMDLCLGRQLHSLCLKSGQI-QAVVVSNSLISMYAKCDNLQSAEAIFRFMN 453

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
            +D V++TS+I  Y   G    A + F+ M++  +    +T  A+L A    G   +G +
Sbjct: 454 EKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLR 509

Query: 535 QFERMTS 541
            ++ M S
Sbjct: 510 MYKVMLS 516



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 128/279 (45%), Gaps = 41/279 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAH---IIFCCGKVKALAQGKQLHACAIAL 103
           F   G  +++ E F ++R    +  + LD FA    I  CC ++  L  G+QLH+  +  
Sbjct: 366 FLQYGCFTESVELFNQMR----AELMTLDQFALATLISGCCSRMD-LCLGRQLHSLCLKS 420

Query: 104 GLEKNPVLVPKLVTFYAS----------FSLYNNACFLVENSNI---------------- 137
           G  +  V+   L++ YA           F   N    +   S I                
Sbjct: 421 GQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFF 480

Query: 138 -----RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDV 191
                +  + WN ++  Y++ G   + L +YK M S   +R D  TY ++ K C ++   
Sbjct: 481 DGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGAN 540

Query: 192 DFG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G +++   +         V NA+++MY K G++  AR++FD +  +D VSWN MI+ Y
Sbjct: 541 KLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGY 600

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +  G+ K+A ++F ++ + G + + I++  +  GC  +G
Sbjct: 601 SQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 639



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 3/169 (1%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  + A   G Q+    + +GL  +  +   ++T Y+       A  + +  N++  + W
Sbjct: 534 CADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSW 593

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N +I+ Y + G   +A+ ++  +  R  + D  +Y +VL  C     V  G+     +  
Sbjct: 594 NAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKR 653

Query: 204 CHEWS--LFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            H  S  L   + +V + G+ G +  A+ L D M ++  A  W  ++SA
Sbjct: 654 AHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSA 702


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 257/454 (56%), Gaps = 56/454 (12%)

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYI 366
           D V+ V  L AC+ +GA   GK +HG AVR   G +E+  V NAL+ MY++C  +  A  
Sbjct: 12  DVVSLVNVLPACASMGAWLHGKAVHGIAVRS--GSFEDLFVGNALVDMYAKCGMVDEASK 69

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE------------------ 408
           +F    EK +++WN+M++GY+ +   E++  LF +M    +E                  
Sbjct: 70  VFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGL 129

Query: 409 ----------------------------------PNYVTIASILPLCARVANLQHGKEFH 434
                                             PN  TI+  L  CAR+A L+ G++ H
Sbjct: 130 GCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIH 189

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            YILR    +  L + N L++MYA+SG +  A+ VFD + +++ V++TSL+ GYG+ G G
Sbjct: 190 AYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRG 249

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           + AL++F+EM +  ++PD VT++ VL ACSHSG++ +G + F  M+  +G+ P  EH+AC
Sbjct: 250 KEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYAC 309

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL GRAG LN+A E+I  M   P+S +W  LL  C+IH N  +GE AA++LLE   EN
Sbjct: 310 MVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEN 369

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
            G Y L++N+YA    W  +A+VR+ M++ G+RK PGC+WV      + F V D ++ Q+
Sbjct: 370 DGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQS 429

Query: 675 QEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           ++IY +L  LT+ +K  GYV +  F   +   EE
Sbjct: 430 KQIYEILRSLTQRIKVLGYVPETSFALHDVDDEE 463



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 182/358 (50%), Gaps = 23/358 (6%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +R D  +  +VL AC  M     G+ VH   + +     LFV NALV MY K G VD A 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG------ 283
           ++FD++ E+D VSWN M++ Y+  G +++A  LF +M+EE +E+NV++W+ +        
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 284 -GC--------LRTGNFKGVLELLSRMRTQETYLDSVATVI--GLGACSHVGALKLGKEI 332
            GC        ++ G     LEL S M  Q+  +      I   L AC+ + AL+LG++I
Sbjct: 129 LGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQI 188

Query: 333 HGSAVRGCYGE-YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           H   +R  +   +  V N LI MY++  D+  A  +F    +K+ ++W S+++GY     
Sbjct: 189 HAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGR 248

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
            +E+  +F EM R G++P+ VT+  +L  C+    +  G EF   + +          + 
Sbjct: 249 GKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYA 308

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGE---GRVALKLFEEMN 505
            +V++  R+G++ EA  + + M      + + +L++G  I      G  A K   E+N
Sbjct: 309 CMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELN 366



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 56/288 (19%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACF 130
           DVV  S  +++  C  + A   GK +H  A+  G  ++  +   LV  YA   + + A  
Sbjct: 12  DVV--SLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASK 69

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI----------------RG- 173
           + +    +  + WN +++ Y + G + +AL ++++M+   I                RG 
Sbjct: 70  VFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGL 129

Query: 174 -----------------------------------DNFTYPSVLKACGEMMDVDFGRVVH 198
                                              + FT    L AC  +  +  GR +H
Sbjct: 130 GCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIH 189

Query: 199 SCIDACHEWS--LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           + I   H  S  L+V N L+ MY K G +DVAR +FD + +++ VSW ++++ Y   G  
Sbjct: 190 AYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRG 249

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           KEA ++F EM+  G++ + +T   +   C  +G     +E  + M  +
Sbjct: 250 KEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKE 297



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 1/133 (0%)

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           + P+ V++ ++LP CA +    HGK  H   +R   F E L + N+LV+MYA+ G V EA
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSF-EDLFVGNALVDMYAKCGMVDEA 67

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
             VFD +  +D V++ +++ GY   G    AL LFE+M +  I+ + V+  AV++A +  
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 527 GLVVEGQKQFERM 539
           GL  E    F  M
Sbjct: 128 GLGCETLDVFREM 140



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 11/198 (5%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRY 139
           +  C ++ AL  G+Q+HA  +    +   + V   L+  YA     + A F+ +N   + 
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  L++ Y   G   EAL V+ +M+   ++ D  T   VL AC     +D G    +
Sbjct: 233 FVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFN 292

Query: 200 CIDACHEWSLFV----HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA---YA 251
            +    E+ +      +  +V + G+ G+++ A  L + M +E  ++ W  ++S    +A
Sbjct: 293 SMSK--EFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHA 350

Query: 252 SKGLWKEAFQLFVEMQEE 269
           +  L + A +  +E+  E
Sbjct: 351 NVELGEHAAKQLLELNSE 368


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 185/649 (28%), Positives = 327/649 (50%), Gaps = 38/649 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++ +G  SK F  F+ +R      D    +   ++  C      + G  +H+  +   L+
Sbjct: 221 YSHQGICSKCFLVFSDMRHHGLRPDAT--TLCSLMSVCASSDHFSHGSGIHSLCLRSSLD 278

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  ++  LV  Y++    ++A FL  N + R  + WN +IS YV++    +AL    Q+
Sbjct: 279 SSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQL 338

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQV 225
                  ++ T+ S L AC     +  G++VH+ +     + +L V N+L++MYGK   +
Sbjct: 339 FHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSM 398

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + A ++F  M   D VS+N +I  YA      +A Q+F  M+  G++ N IT   I G  
Sbjct: 399 EDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSF 458

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
             + +                                      G+ +H   +R  +   E
Sbjct: 459 ASSNDLH----------------------------------NYGRPLHAYIIRTGFLSDE 484

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V N+LITMY++C +L  +  +F     K+I++WN++++    L   EE+  LF +M  +
Sbjct: 485 YVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHA 544

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G + + V +A  L  CA +A+L+ G + H   ++  + ++  ++ N+ ++MY + GK+ E
Sbjct: 545 GNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVV-NAAMDMYGKCGKMDE 603

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
              V    + R +  + +LI+GY   G  + A + F++M     KPD+VT VA+LSACSH
Sbjct: 604 MLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSH 663

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           +GLV +G   +  M S +G+ P ++H  C+VDL GR G   +A++ I +MP  P   +W 
Sbjct: 664 AGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWR 723

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
           +LL + + H+N  IG   A+KLLE  P +   YVL++N+YA    W  + K+R+ M+ + 
Sbjct: 724 SLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTIN 783

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           + K P C+W+   N  S F + D  +  A++IY  L  +   +++ GY+
Sbjct: 784 INKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYI 832



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 139/544 (25%), Positives = 251/544 (46%), Gaps = 42/544 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
            +  G L +A  A+ ++R      +   ++FA ++  CG ++    G Q+ +  I  GL+
Sbjct: 120 LSSNGYLEEALRAYRQMRRDGVPCNA--NAFATVVSLCGSLENEVPGLQVASQVIVSGLQ 177

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               +   L+T + +    ++A  L +       + WN +IS+Y   G  ++   V+  M
Sbjct: 178 NQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDM 237

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           +   +R D  T  S++  C        G  +HS C+ +  + S+ V NALV+MY   G++
Sbjct: 238 RHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKL 297

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A  LF  M  RD +SWNTMIS+Y       +A +   ++       N +T+++     
Sbjct: 298 SDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSS----- 352

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          LGACS  GAL  GK +H   ++       
Sbjct: 353 ------------------------------ALGACSSPGALIDGKMVHAIVLQLSLQRNL 382

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V N+LITMY +C  +  A  +F+      I+++N ++ GY  L+   ++  +F  M  +
Sbjct: 383 LVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSA 442

Query: 406 GVEPNYVTIASILPLCARVANLQ-HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           G++PNY+T+ +I    A   +L  +G+  H YI+R    ++  +  NSL+ MYA+ G + 
Sbjct: 443 GIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVA-NSLITMYAKCGNLE 501

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            + ++F+ ++ ++ V++ ++IA     G G  ALKLF +M     K D V +   LS+C+
Sbjct: 502 SSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCA 561

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
               + EG  Q   +    G+          +D+YG+ G +++  +++      P    W
Sbjct: 562 SLASLEEGM-QLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQC-W 619

Query: 585 ATLL 588
            TL+
Sbjct: 620 NTLI 623



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 212/448 (47%), Gaps = 40/448 (8%)

Query: 76  SFAHIIFCC---GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           + A ++  C   G+ + +A G  +HA     GL  N  +   L+  Y S  + ++A  L 
Sbjct: 43  ALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLF 102

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
                R  + W  L+     +G+  EAL  Y+QM+   +  +   + +V+  CG + +  
Sbjct: 103 WEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEV 162

Query: 193 FG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G +V    I +  +  + V N+L++M+G  G+V  A +LFD+M E D +SWN MIS Y+
Sbjct: 163 PGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYS 222

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
            +G+  + F +F +M+  G+  +  T  ++   C  + +F                    
Sbjct: 223 HQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHF-------------------- 262

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                    SH      G  IH   +R        V NAL+ MYS    L  A  LF   
Sbjct: 263 ---------SH------GSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           + + +I+WN+M+S Y     + ++     ++F +   PN++T +S L  C+    L  GK
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 367

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
             H  +L+ ++   +LL+ NSL+ MY +   + +A+ VF  M   D V+Y  LI GY + 
Sbjct: 368 MVHAIVLQLSL-QRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVL 426

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            +G  A+++F  M    IKP+++TM+ +
Sbjct: 427 EDGTKAMQVFSWMRSAGIKPNYITMINI 454



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 205/443 (46%), Gaps = 41/443 (9%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC---GEMMDVDFG 194
           R P  W   +S  VR G    A  + + M+ R +    F   S++ AC   G    +  G
Sbjct: 4   RTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACG 63

Query: 195 RVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             +H+    A    ++++  AL+ +YG  G V  A+RLF +M ER+ VSW  ++ A +S 
Sbjct: 64  AAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSN 123

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G  +EA + + +M+ +GV  N   + T+   C       G LE                 
Sbjct: 124 GYLEEALRAYRQMRRDGVPCNANAFATVVSLC-------GSLE---------------NE 161

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           V GL   S V    L  ++             +V N+LITM+     +  A  LF    E
Sbjct: 162 VPGLQVASQVIVSGLQNQV-------------SVANSLITMFGNLGRVHDAEKLFDRMEE 208

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
              I+WN+M+S Y+H     +   +F +M   G+ P+  T+ S++ +CA   +  HG   
Sbjct: 209 HDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGI 268

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H   LR ++ +  + + N+LV MY+ +GK+ +A+ +F  MSRRD +++ ++I+ Y     
Sbjct: 269 HSLCLRSSL-DSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCN 327

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              ALK   ++      P+H+T  + L ACS  G +++G K    +     +   L    
Sbjct: 328 STDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDG-KMVHAIVLQLSLQRNLLVGN 386

Query: 554 CMVDLYGRAGLLNKAKEIITKMP 576
            ++ +YG+   +  A+++   MP
Sbjct: 387 SLITMYGKCNSMEDAEKVFQSMP 409



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 145/341 (42%), Gaps = 34/341 (9%)

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M +R   +W T +S     G    AF++   M+E GV ++     ++   C R G  +G+
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
                                   AC        G  IH    R        +  AL+ +
Sbjct: 61  ------------------------AC--------GAAIHALTHRAGLMGNVYIGTALLHL 88

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y     +  A  LF    E+++++W +++   +     EE+   +R+M R GV  N    
Sbjct: 89  YGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAF 148

Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
           A+++ LC  + N   G +    ++   + N+ + + NSL+ M+   G+V +A+ +FD M 
Sbjct: 149 ATVVSLCGSLENEVPGLQVASQVIVSGLQNQ-VSVANSLITMFGNLGRVHDAEKLFDRME 207

Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
             D +++ ++I+ Y  QG       +F +M  + ++PD  T+ +++S C+ S     G  
Sbjct: 208 EHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSG 267

Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
               +     +   +     +V++Y  AG L+ A+ +   M
Sbjct: 268 -IHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 30  INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           I N++I+  N +       G G   +A + F  ++      D V    A  +  C  + +
Sbjct: 510 ITNKNIVSWNAIIAANVQLGHGE--EALKLFIDMQHAGNKLDRVC--LAECLSSCASLAS 565

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
           L +G QLH   +  GL+ +  +V   +  Y      +    +V +  IR    WN LIS 
Sbjct: 566 LEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISG 625

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL 209
           Y + G++ EA   +KQM +   + D  T+ ++L AC     VD G   ++ + +    S 
Sbjct: 626 YAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSP 685

Query: 210 FVHN--ALVSMYGKFGQVDVARRLFDKM--LERDAVSWNTMISA 249
            + +   +V + G+ G+   A +  ++M  L  D + W +++S+
Sbjct: 686 GIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLI-WRSLLSS 728


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 189/624 (30%), Positives = 306/624 (49%), Gaps = 50/624 (8%)

Query: 81  IFCCGKVKA------LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +FC   +K       L +GKQLHA  I  G      L  +++  Y   +  ++A  L E 
Sbjct: 51  LFCANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEE 110

Query: 135 SNIRYPLPWNLLISLYV-------RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187
            ++R  + WN+LI   V        D    +    +K+M    +  D+ T+  +   C +
Sbjct: 111 LSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVK 170

Query: 188 MMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
             D+D G  +H   +    +   FV + LV +Y + G V+ ARR+F  +  RD V WN M
Sbjct: 171 FHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVM 230

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           IS YA   L +EAF +F  M+ +G   +  T++ +                         
Sbjct: 231 ISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNL------------------------- 265

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                     L  C  +     GK++HG  +R  +     V +ALI MY++ +++  A+ 
Sbjct: 266 ----------LSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNENIVDAHR 315

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           LF     ++++ WN+++ GY +     E   L REM R G  P+ +TI+S + LC  V+ 
Sbjct: 316 LFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISLCGYVSA 375

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           +    + H + ++ + F E L + NSL+  Y++ G +  A   F L    D V++TSLI 
Sbjct: 376 ITETMQAHAFAVKSS-FQEFLSVANSLISAYSKCGSITSACKCFRLTREPDLVSWTSLIN 434

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
            Y   G  + A ++FE+M    I PD ++ + VLSACSH GLV +G   F  MTS+Y I 
Sbjct: 435 AYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGLHYFNLMTSVYKIV 494

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606
           P   H+ C+VDL GR GL+N+A E +  MP    S      + +C +H N G+ +WAAEK
Sbjct: 495 PDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTLGAFVASCNLHANIGLAKWAAEK 554

Query: 607 LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
           L    PE +  Y +++N+YA+   W  + +VR  M +    ++PGC+W++  N    F+ 
Sbjct: 555 LFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCSWIEITNQVHSFVS 614

Query: 667 DDTSNVQAQEIYPLLGGLTELMKD 690
           +D  + +A E++  L  L   MK+
Sbjct: 615 NDKIHPKALEMHATLKMLLWPMKE 638



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 193/424 (45%), Gaps = 52/424 (12%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
            N  + F  F R+ +     D    +F  +   C K   +  G QLH  A+ LGL+ +  
Sbjct: 137 SNQQQCFSYFKRMLLELVVPDST--TFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCF 194

Query: 111 LVPKLVTFYASFSLYNNA--CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
           +   LV  YA   L  NA   FLV     R  + WN++IS Y  +    EA  ++  M+ 
Sbjct: 195 VGSVLVDLYAQCGLVENARRVFLVVQH--RDLVVWNVMISCYALNCLPEEAFVMFNLMRW 252

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDV 227
               GD FT+ ++L  C  +   DFG+ VH  I     +  + V +AL++MY K   +  
Sbjct: 253 DGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNENIVD 312

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A RLFD M+ R+ V+WNT+I  Y ++    E  +L  EM  EG   + +T          
Sbjct: 313 AHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELT---------- 362

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                  +++ I L  C +V A+    + H  AV+  + E+ +V
Sbjct: 363 -----------------------ISSTISL--CGYVSAITETMQAHAFAVKSSFQEFLSV 397

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
            N+LI+ YS+C  +  A   F++T E  +++W S+++ Y     A+E+  +F +M   G+
Sbjct: 398 ANSLISAYSKCGSITSACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGI 457

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF-----NEHLLLWNSLVEMYARSGK 462
            P+ ++   +L  C+    +  G   H + L  +++     + H   +  LV++  R G 
Sbjct: 458 IPDQISFLGVLSACSHCGLVTKG--LHYFNLMTSVYKIVPDSGH---YTCLVDLLGRYGL 512

Query: 463 VPEA 466
           + EA
Sbjct: 513 INEA 516


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 223/708 (31%), Positives = 347/708 (49%), Gaps = 22/708 (3%)

Query: 11  NGLSVSQLE-KFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAAS 69
           N L V+ L+   +P  +K  +       ++    +  FA      +A E F R+R +   
Sbjct: 127 NALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIE 186

Query: 70  HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
            +    SF  I+  C ++  L  G QLHA  I +G      +   L+  Y      ++  
Sbjct: 187 LNEF--SFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVL 244

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG---DNFTYPSVLKACG 186
            L +    R    WN +IS  V++  Y  A  +++ M  RRI G   D+FT  ++L A  
Sbjct: 245 QLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDM--RRIDGFRIDHFTLSTILVAAR 302

Query: 187 EMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
            +  +  GR +H+  I    E ++ V NAL+  Y K G +     LF+KM  RD ++W  
Sbjct: 303 GLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTE 361

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
           MI+AY   GL   A ++F +M       N I++N I  G  + G     L    RM  + 
Sbjct: 362 MITAYMEFGLTDLALEVFDKMPAR----NSISYNAILSGFCQNGEGSKALAFFCRMVEEG 417

Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
             L        L AC  +   K+ K+IHG  ++  +G    +  AL+ M +RC  +  A 
Sbjct: 418 VELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQ 477

Query: 366 ILFKMTAEKSI--ITWNSMLSGYTHLDCAEESAFLF-REMFRSGVEPNYVTIASILPLCA 422
            +F   +      I W SM+ GY      EE+  LF +      +  + V   ++L +C 
Sbjct: 478 KMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCG 537

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            +A  + GK+ HC+ L+    ++ L + NS++ MY++   + +A  VF++M   D V++ 
Sbjct: 538 TLAFHEMGKQIHCHALKSGFLSD-LGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWN 596

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH--SGLVVEGQKQFERMT 540
            LIAG+ +  +G  AL ++ +M K  IKPD VT V ++SA  H  S LV   ++ F  M 
Sbjct: 597 GLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMK 656

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
           +IY I P +EH+  +V + G  GLL +A+E+I KMP  P +++W  LL AC+IH NT IG
Sbjct: 657 TIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIG 716

Query: 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           + AA+ LL  +P +   Y+L++N+Y+A G W     VR  MR  G RK PG +W+   N 
Sbjct: 717 KRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENK 776

Query: 661 FSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
              F   D S+ QA++I+  L  L      AGYV    F   E  VEE
Sbjct: 777 VHSFYARDKSHPQAKDIHSGLELLIMECLKAGYVPDTSFVLHE--VEE 822



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 135/297 (45%), Gaps = 33/297 (11%)

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           ++L K +H S  +    E  ++ NALI  Y +   + +AY +F   +  +++++ +M+SG
Sbjct: 106 VELIKAVHASIFK--LAEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISG 163

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           +   +   ++  +F  M  SG+E N  +  +IL +C R+ +L+ G + H  +++    N 
Sbjct: 164 FAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLN- 222

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
           +  + N+L+ +Y + G +     +FD M  RD  ++ ++I+    +     A +LF +M 
Sbjct: 223 YTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMR 282

Query: 506 K-NQIKPDHVTMVAVLSACS----------HSGLVVEGQKQ-----------FERMTSIY 543
           + +  + DH T+  +L A            H+ ++  G +            + +  SI 
Sbjct: 283 RIDGFRIDHFTLSTILVAARGLASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIK 342

Query: 544 GIFPQLEHFAC--------MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            +    E            M+  Y   GL + A E+  KMP   + +  A L G CQ
Sbjct: 343 HVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQ 399


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 176/532 (33%), Positives = 286/532 (53%), Gaps = 7/532 (1%)

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
           Q+  R  +    TY ++++ C +   ++ G+ VH  I  +     + + N ++ MY K G
Sbjct: 77  QLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCG 136

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +  AR++FD+M ERD  SWN M++ YA  GL +EA  LF EM E     +  +W  +  
Sbjct: 137 SLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPER----DSYSWTAMVT 192

Query: 284 GCLRTGNFKGVLELLSRM-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
           G ++    +  L L S M R   +  +       + A + +  ++ GKEIHG  VR    
Sbjct: 193 GYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLD 252

Query: 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
             E + ++L+ MY +C  +  A  +F    +K +++W SM+  Y       E   LF E+
Sbjct: 253 SDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSEL 312

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
             S   PN  T + +L  CA +   + G++ H Y + R  F+ +    +SL++MY + G 
Sbjct: 313 IGSCERPNEYTFSGVLNACADLTTEELGRQVHGY-MTRVGFDPYSFASSSLIDMYTKCGN 371

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  A+ V D   + D V+ TSLI GY   G+   ALK F+ + K+  KPDHVT V VLSA
Sbjct: 372 IESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSA 431

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           C+H+GLV +G + F  +T  + +    +H+ C+VDL  R+G   + K ++++MP  P+  
Sbjct: 432 CTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKF 491

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
           +WA++LG C  + N  + E AA++L +  PEN   YV +AN+YAA G W++  K+R  M+
Sbjct: 492 LWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQ 551

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           ++G+ K PG +W +       F+  DTS+    +I   LG L + MK+ GYV
Sbjct: 552 EIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYV 603



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 132/548 (24%), Positives = 233/548 (42%), Gaps = 83/548 (15%)

Query: 33  EHIMRINLL-ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALA 91
           E + R N   E +    G+  L +A +   R +   AS      ++ ++I  C + +AL 
Sbjct: 51  ERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPAS------TYCNLIQVCSQTRALE 104

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYAS-------------------------FSLYN 126
           +GK++H      G     V+  +++  YA                           + Y 
Sbjct: 105 EGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYA 164

Query: 127 NACFLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYP 179
               L E  N+   +P      W  +++ YV+     EAL +Y  MQ       N FT  
Sbjct: 165 EVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVS 224

Query: 180 SVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER 238
           S + A   +  +  G+ +H   + A  +    + ++L+ MYGK G +D AR +FDK++++
Sbjct: 225 SAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDK 284

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG--NFKGVLE 296
           D VSW +MI  Y     W+E F LF E+                G C R     F GV  
Sbjct: 285 DVVSWTSMIDRYFKSSRWREGFSLFSEL---------------IGSCERPNEYTFSGV-- 327

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                               L AC+ +   +LG+++HG   R  +  Y    ++LI MY+
Sbjct: 328 --------------------LNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYT 367

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +C ++  A  +     +  +++  S++ GY      +E+   F  + +SG +P++VT  +
Sbjct: 368 KCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVN 427

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L  C     ++ G EF   I  +         +  LV++ ARSG+  + KSV   M  +
Sbjct: 428 VLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMK 487

Query: 477 -DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH-VTMVAVLSACSHSGLVVEGQK 534
             +  + S++ G    G   +A +  +E+ K  I+P++ VT V + +  + +G   E  K
Sbjct: 488 PSKFLWASVLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYVTMANIYAAAGKWEEEGK 545

Query: 535 QFERMTSI 542
             +RM  I
Sbjct: 546 MRKRMQEI 553


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 184/616 (29%), Positives = 315/616 (51%), Gaps = 70/616 (11%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLP- 142
           C  +  L+  +QLHA AI      + V+   +V  YA       A  LV+     + LP 
Sbjct: 255 CKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYA------KADSLVDARRAFFGLPN 308

Query: 143 -----WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
                 N ++   VR G  AEA+ +++ M    I     +   V  AC E+   D     
Sbjct: 309 HTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFD----- 363

Query: 198 HSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
              +D C      V NA++ +YGK   +  A  +F +M +RD+VSWNT+I+A      ++
Sbjct: 364 ---VDVC------VRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYE 414

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           +      EM   G+E +  T+ ++                                   L
Sbjct: 415 DTIVHLNEMLRSGMEADDFTYGSV-----------------------------------L 439

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+ + +L+ G  +HG A++   G    V + ++ MY +C  +  A  L      + ++
Sbjct: 440 KACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELV 499

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +WNS+++G++    +EE+   F EM   GV+P++ T A++L  CA +A ++ GK+ H  I
Sbjct: 500 SWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQI 559

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           +++ M  +  +  ++LV+MYA+ G +P+++ +F+ + + D V++ ++I GY + G+G  A
Sbjct: 560 IKQEMLGDEFI-SSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHGQGFEA 618

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L++FE   K  + P+H T VAVL ACSH GL+ +G + F  MTS Y + PQLEHFACM  
Sbjct: 619 LEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYKLEPQLEHFACMGP 678

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
                    +A + I  MP    + +W TLL  C+I ++  + E AA  +L   P++S  
Sbjct: 679 --------QEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSV 730

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           Y+L++N+YA +G W  +++ R  MR   ++K PGC+W++  +    FLV +  + +++E+
Sbjct: 731 YILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLVGEKVHPRSREV 790

Query: 678 YPLLGGLTELMKDAGY 693
           Y +L  L   MK +GY
Sbjct: 791 YEMLNNLICEMKLSGY 806



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/504 (24%), Positives = 220/504 (43%), Gaps = 88/504 (17%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN L+S Y + G + + + +  +M    +  D  T   +LKACG + D+  G  +H+ 
Sbjct: 129 VSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHAL 188

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA---------- 249
            +    E  +   +ALV MYGK   ++ A   F  M ER++VSW  +I+           
Sbjct: 189 AVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRG 248

Query: 250 -----------------------------------------YASKGLWKEAFQLFVEMQE 268
                                                    YA      +A + F  +  
Sbjct: 249 LELLCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPN 308

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
             VE    T N +  G +RTG     ++L   M           + IG G  S  G    
Sbjct: 309 HTVE----TCNAMMVGLVRTGLGAEAMQLFQFM---------TRSGIGFGVVSLSGVFSA 355

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
             E+ G  V  C      VRNA++ +Y +CK L  AY++F+   ++  ++WN++++    
Sbjct: 356 CAEVKGFDVDVC------VRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQ 409

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
            +C E++     EM RSG+E +  T  S+L  CA + +L++G   H   ++  +      
Sbjct: 410 NECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGL-GLDAF 468

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           + +++V+MY + G + EA  + D +  ++ V++ S+IAG+ +  +   A K F EM    
Sbjct: 469 VSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMG 528

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF------ACMVDLYGRA 562
           +KPDH T   VL +C++   +  G++       I+G   + E        + +VD+Y + 
Sbjct: 529 VKPDHFTYATVLDSCANLATIELGKQ-------IHGQIIKQEMLGDEFISSTLVDMYAKC 581

Query: 563 GLLNKAK---EIITKMPYTPTSAM 583
           G +  ++   E + K+ +   +AM
Sbjct: 582 GNMPDSQLMFEKVQKLDFVSWNAM 605



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 177/385 (45%), Gaps = 45/385 (11%)

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
           ++FV N L+ MY + G    A  +FD M  RD VSWNTM++AYA  G    A  L   M 
Sbjct: 65  TMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMP 124

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
           +     +V++WN +  G  + G F+ ++ L   M       D     + L AC  +  L 
Sbjct: 125 DP----DVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLA 180

Query: 328 LGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           LG +IH  AV+   G   +VR  +AL+ MY +C+ L  A   F    E++ ++W ++++G
Sbjct: 181 LGVQIHALAVK--TGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAG 238

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
                C +       E +  G+E        +L  C  +  L   ++ H + ++   F+ 
Sbjct: 239 -----CVQ------NEQYMRGLE--------LLCRCKAITCLSTARQLHAHAIKNK-FSS 278

Query: 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505
             ++  ++V++YA++  + +A+  F  +      T  +++ G    G G  A++LF+ M 
Sbjct: 279 DRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMT 338

Query: 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565
           ++ I    V++  V SAC+         K F+    +            ++DLYG+   L
Sbjct: 339 RSGIGFGVVSLSGVFSACAEV-------KGFDVDVCVRN---------AILDLYGKCKAL 382

Query: 566 NKAKEIITKMPYTPTSAMWATLLGA 590
            +A  +  +M     S  W T++ A
Sbjct: 383 VEAYLVFQEMEQRD-SVSWNTIIAA 406



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 1/215 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  +++L  G  +H  AI  GL  +  +   +V  Y    +   A  L +  
Sbjct: 434 TYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRI 493

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I+ +  +    EA   + +M    ++ D+FTY +VL +C  +  ++ G+
Sbjct: 494 GGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGK 553

Query: 196 VVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   I        F+ + LV MY K G +  ++ +F+K+ + D VSWN MI  YA  G
Sbjct: 554 QIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHG 613

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
              EA ++F   Q+  V  N  T+  +   C   G
Sbjct: 614 QGFEALEMFERTQKANVAPNHATFVAVLRACSHVG 648



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 13/177 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++A ++  C  +  +  GKQ+H   I   +  +  +   LV  YA      ++  + E  
Sbjct: 535 TYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKV 594

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                + WN +I  Y   G   EAL ++++ Q   +  ++ T+ +VL+AC  +  +D   
Sbjct: 595 QKLDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLD--- 651

Query: 196 VVHSCIDACHEWSLFVH----NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
                 D C  + L          +  +   G  +  + +    LE DAV W T++S
Sbjct: 652 ------DGCRYFHLMTSRYKLEPQLEHFACMGPQEALKFIRSMPLEADAVIWKTLLS 702


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 175/567 (30%), Positives = 294/567 (51%), Gaps = 42/567 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y S++  C     +  G+++HS  I     ++ F+ N L+  Y K   +  A ++F  + 
Sbjct: 17  YSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLP 76

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
            ++  SWN +ISAY+  GL+ EA  L  +M +     N++++N++  G    G  K  L 
Sbjct: 77  VKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKP----NLVSYNSLISGLGHHGFRKESLN 132

Query: 297 LLSRMRTQ--ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
           +   M  Q      D    V  +G+C+ +GA +L +++HG+A+         + NALI  
Sbjct: 133 VFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDA 192

Query: 355 YSRCKD-------------------------------LRHAYILFKMTAEKSIITWNSML 383
           Y +C +                               L  A+ LF    EK+ ++W +++
Sbjct: 193 YGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALI 252

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           +G+      +E+  LF +M   G+ P+  T AS+L  CA +A +  GKE H +I+R    
Sbjct: 253 AGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCI 312

Query: 444 NE--HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           +   ++ + N+L++MY + G++  A ++F  M  +D V++ SLI G+   G G  +L +F
Sbjct: 313 DYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVF 372

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
           E M +  I+P+HVT + +LSAC H+GLV EG +  + M   YG+ P+ +H+A M+DL GR
Sbjct: 373 ERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGR 432

Query: 562 AGLLNKAKEIITKMPY-TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
              L +A  +I + P  +    MW  LLGAC+IH N  +   AAE L +  P N+  YV+
Sbjct: 433 NNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVM 492

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           + N+YAA   WD+  +VR  M + G+RK   C+W++  N    F+  + S+ Q  E+Y +
Sbjct: 493 VYNIYAAASRWDEARQVRRLMMERGLRKEAACSWIEVRNTRHQFVAKERSHCQINEVYEV 552

Query: 681 LGGLTELMKDAGYV-VKEEFCSEEEIV 706
           +  L + M D+GY+     F  EE+ V
Sbjct: 553 IHNLVDQMYDSGYLPCHSSFLPEEDGV 579



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 184/402 (45%), Gaps = 41/402 (10%)

Query: 66  TAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125
           T +S D     ++ +I  C   + L  GK LH+  I   L     L  +L+ FY+     
Sbjct: 6   TLSSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSI 65

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA-------------------------- 159
            +A  +     ++    WN++IS Y R G + EA                          
Sbjct: 66  QSAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHG 125

Query: 160 -----LCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFV 211
                L V+K M  Q   +  D FT  S++ +C  +   +  R VH + I      ++ +
Sbjct: 126 FRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIII 185

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            NAL+  YGK G+ D++  +F +M ERD VSW +M++AYA     ++A  LF +MQE+  
Sbjct: 186 GNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEK-- 243

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             N ++W  +  G  + G     L L  +MR +     +      L AC+ +  +  GKE
Sbjct: 244 --NTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKE 301

Query: 332 IHGSAVRG-CYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
           IHG  +R  C   + N  + NALI MY +C  +R A  LFK   EK I++WNS+++G+  
Sbjct: 302 IHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQ 361

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
               EES  +F  M  + + PN+VT   +L  C     +  G
Sbjct: 362 NGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEG 403



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 41/270 (15%)

Query: 71  DVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-------S 121
           +V+ D F    ++  C  + A    +Q+H  AI +GL  N ++   L+  Y        S
Sbjct: 143 NVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDIS 202

Query: 122 FSLYN------------------------NACFLVENSNIRYPLPWNLLISLYVRDGFYA 157
           FS+++                        +A +L      +  + W  LI+ + ++G   
Sbjct: 203 FSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGD 262

Query: 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH------SCIDACHEWSLFV 211
           EAL +++QM+   I    FT+ SVL AC ++  +  G+ +H      +CID  +  ++F+
Sbjct: 263 EALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCID--YFCNIFI 320

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            NAL+ MY K GQ+  A  LF  M E+D VSWN++I+ +A  G  +E+  +F  M E  +
Sbjct: 321 LNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADI 380

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
             N +T+  +   C  TG     L +L  M
Sbjct: 381 RPNHVTFLGLLSACCHTGLVSEGLRILDSM 410


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 172/520 (33%), Positives = 285/520 (54%), Gaps = 39/520 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y ++L AC +   +  G+ VH+  I   +  + ++   L+  YGK   ++ AR++ D+M 
Sbjct: 55  YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 114

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           E++ VSW  MIS Y+  G   EA  +F EM     + N  T+ T+   C+R         
Sbjct: 115 EKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRAS------- 167

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                              GLG         LGK+IHG  V+  Y  +  V ++L+ MY+
Sbjct: 168 -------------------GLG---------LGKQIHGLIVKWNYDSHIFVGSSLLDMYA 199

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +   ++ A  +F+   E+ +++  ++++GY  L   EE+  +F  +   G+ PNYVT AS
Sbjct: 200 KAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYAS 259

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           +L   + +A L HGK+ HC++LRR +   + +L NSL++MY++ G +  A+ +FD M  R
Sbjct: 260 LLTALSGLALLDHGKQAHCHVLRREL-PFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER 318

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
             +++ +++ GY   G GR  L+LF  M ++ ++KPD VT++AVLS CSH  +   G   
Sbjct: 319 TAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNI 378

Query: 536 FERMTS-IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           F+ M +  YG  P  EH+ C+VD+ GRAG +++A E I +MP  PT+ +  +LLGAC++H
Sbjct: 379 FDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVH 438

Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
            +  IGE    +L+E  PEN+G YV+++N+YA+ G W  +  VR  M    V K PG +W
Sbjct: 439 LSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSW 498

Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +        F  +D ++ + +E+   +  ++  MK AGYV
Sbjct: 499 IQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 538



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 188/404 (46%), Gaps = 51/404 (12%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C   +AL  G+++HA  I         L  +L+ FY       +A  +++    + 
Sbjct: 58  LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 117

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  +IS Y + G  +EAL V+ +M     + + FT+ +VL +C     +  G+ +H 
Sbjct: 118 VVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHG 177

Query: 200 CIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I    ++  +FV ++L+ MY K GQ+  AR +F+ + ERD VS   +I+ YA  GL +E
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 237

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A ++F  +  EG+  N +T+ ++                                   L 
Sbjct: 238 ALEMFHRLHSEGMSPNYVTYASL-----------------------------------LT 262

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           A S +  L  GK+ H   +R     Y  ++N+LI MYS+C +L +A  LF    E++ I+
Sbjct: 263 ALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAIS 322

Query: 379 WNSMLSGYTHLDCAEESAFLFREMF-RSGVEPNYVTIASILPLCARVA------NLQHGK 431
           WN+ML GY+      E   LFR M     V+P+ VT+ ++L  C+         N+  G 
Sbjct: 323 WNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGM 382

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
               Y  +     EH   +  +V+M  R+G++ EA   F+ + R
Sbjct: 383 VAGEYGTKPG--TEH---YGCIVDMLGRAGRIDEA---FEFIKR 418



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 12/217 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++  C +   L  GKQ+H   +    + +  +   L+  YA       A  + E  
Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECL 214

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  +    +I+ Y + G   EAL ++ ++ S  +  +  TY S+L A   +  +D G+
Sbjct: 215 PERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGK 274

Query: 196 VVHSCIDACH------EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
             H     CH       +   + N+L+ MY K G +  ARRLFD M ER A+SWN M+  
Sbjct: 275 QAH-----CHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVG 329

Query: 250 YASKGLWKEAFQLFVEMQEEG-VEVNVITWNTIAGGC 285
           Y+  GL +E  +LF  M++E  V+ + +T   +  GC
Sbjct: 330 YSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGC 366


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 318/609 (52%), Gaps = 42/609 (6%)

Query: 61  TRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA 120
           TR+R     +D V+  F+ ++  C +++   +G++LH   + +G   + VL   LV  YA
Sbjct: 127 TRLRKCLNEYDNVV--FSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLT-GLVDMYA 183

Query: 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS 180
                 ++  + +    R  + W  +I  YV++    E L ++ +M+   + G+ +T  S
Sbjct: 184 KCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGS 243

Query: 181 VLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD 239
           ++ AC ++  +  G+ VH   I +  + + F+   L+ +Y K G +              
Sbjct: 244 LVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDI-------------- 289

Query: 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
                            ++AF +F E+      +++++W  +  G  + G  +  L+L +
Sbjct: 290 -----------------RDAFSVFDELST----IDLVSWTAMIVGYAQRGYPREALKLFT 328

Query: 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
             R ++   ++V T   L AC+  G+L +G+ +H   ++    E     NAL+ MY++C 
Sbjct: 329 DERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIK-LGSEDATFENALVDMYAKCH 387

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
            +  A  +F+   +K +I WNS++SGYT    A E+  LF +M    V P+ +T+ S+L 
Sbjct: 388 MIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLS 447

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
            CA V   + G   H Y ++  + +  + +  +L+  YA+ G    A+ +FD M  ++ +
Sbjct: 448 ACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTI 507

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           T++++I GYGIQG+   +L+LF +M K +++P+ V    +LSACSHSG++ EG + F  M
Sbjct: 508 TWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTM 567

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGI 599
             +Y   P ++H+ACMVDL  RAG L +A + I K+P  P  ++    L  C++H    +
Sbjct: 568 CQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDL 627

Query: 600 GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD--A 657
           GE A  ++LE  P+ + YYVL++N+YA+ G W +  +V   M+  G+ K+PG + VD   
Sbjct: 628 GEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIET 687

Query: 658 GNVFSPFLV 666
            N FSP +V
Sbjct: 688 SNDFSPLIV 696



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/535 (27%), Positives = 249/535 (46%), Gaps = 56/535 (10%)

Query: 85  GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP--LP 142
           G  K ++  +++HA  +  GL ++ +   KLV+ Y SF   +  C  +    IR P    
Sbjct: 47  GICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFG--HVECARLMFDRIRNPDLYS 104

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRG-----DNFTYPSVLKACGEMMDVDFGRVV 197
           W ++I  Y  +  Y+E +    Q  + R+R      DN  +  VLKAC E+ + D GR +
Sbjct: 105 WKVMIRWYFLNDSYSEIV----QFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKL 160

Query: 198 HSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
           H  I        FV   LV MY K  +V+ +RR+FD++L+R+ V W +MI  Y      K
Sbjct: 161 HCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLK 220

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
           E   LF  M+E  VE N  T                              L S+ T    
Sbjct: 221 EGLVLFNRMREGLVEGNQYT------------------------------LGSLVT---- 246

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            AC+ +GAL  GK +HG  ++  +     +   L+ +Y +C D+R A+ +F   +   ++
Sbjct: 247 -ACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLV 305

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +W +M+ GY       E+  LF +     + PN VT +S+L  CA+  +L  G+  HC  
Sbjct: 306 SWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLG 365

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           ++  + +E     N+LV+MYA+   + +A+ VF+ +  +D + + S+I+GY   G    A
Sbjct: 366 IK--LGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEA 423

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L+LF++M  + + PD +T+V+VLSAC+  G    G            +   +     +++
Sbjct: 424 LELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLN 483

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG-----IGEWAAEKL 607
            Y + G    A+ I  +M    T   W+ ++G   I  +        G+   EKL
Sbjct: 484 FYAKCGDAESARVIFDEMGEKNT-ITWSAMIGGYGIQGDCSRSLELFGDMLKEKL 537


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  308 bits (790), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 187/613 (30%), Positives = 310/613 (50%), Gaps = 40/613 (6%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           AGR   + A     R R  A   DVV+ S A  +    +      G++LH C +      
Sbjct: 104 AGRHAEAVAVHRDMRRRCPAEQEDVVVLSLA--LKAAVRSADFGYGRRLH-CDVVKAGGG 160

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
           +  ++  LV  YA      NA  + +    R  + W  ++S  +++G   E L ++ +M+
Sbjct: 161 DLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMR 220

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVD 226
              I    +T  SVL AC  +  +  GR++H S +      + F+  A++ MY K G+ +
Sbjct: 221 QESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAE 280

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            AR++FD++   D V W TMI  Y   G   +A  LFV+ +   +  N +T         
Sbjct: 281 DARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVT--------- 331

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
                                   +ATV  L A + +  L LG+ IHG +V+    E + 
Sbjct: 332 ------------------------IATV--LSASAQLRNLSLGRSIHGISVKLGAVENDV 365

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           V NAL+ MY++CK L  A  +F     K ++TWNS+++GY   D   ++  LF  M   G
Sbjct: 366 VMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQG 425

Query: 407 VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
             P+ +++ + L  C  + +L  GK FH Y ++ A F  ++ +  +L+ +Y +   +P A
Sbjct: 426 SLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHA-FMSNIYVNTALLNLYNKCADLPSA 484

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
           + VF  M+ R+ VT+ ++I GYG+QG+   ++ LF EM K+ I+P+     ++LS CSH+
Sbjct: 485 QRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHT 544

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G+V  G+K FE M   + I P ++H+ACMVD+  RAG L +A E I KMP    +++W  
Sbjct: 545 GMVTVGKKCFESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQA 604

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
            L  C++H      E A  +++   P+   + V+++N+Y + G WDK   +R  M++ G+
Sbjct: 605 FLHGCKLHSRLEFAEEAVNRMMVLHPDTPDFCVMMSNLYTSYGRWDKSLAIRKLMKERGL 664

Query: 647 RKIPGCAWVDAGN 659
            K+PGC+ V   N
Sbjct: 665 VKLPGCSSVGLEN 677



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 142/539 (26%), Positives = 246/539 (45%), Gaps = 41/539 (7%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRD 153
           + LHA  +A GL +      KL++ YA+     +A  +++ +       + + +  +   
Sbjct: 45  RALHARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPDAYTYKVALGWHAAA 104

Query: 154 GFYAEALCVYKQMQSR--RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV 211
           G +AEA+ V++ M+ R    + D       LKA     D  +GR +H  +       LFV
Sbjct: 105 GRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRLHCDVVKAGGGDLFV 164

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N LV MY K G +  AR++FD++ +R+ VSW +M+S     GL KE   LF EM++E +
Sbjct: 165 MNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESI 224

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             +  T  ++                                   L AC+ +G+L  G+ 
Sbjct: 225 LPSEYTMASV-----------------------------------LMACTMLGSLHQGRL 249

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IHGS ++        +  A++ MY +C +   A  +F   +   ++ W +M+ GYT    
Sbjct: 250 IHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGS 309

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             ++  LF +     + PN VTIA++L   A++ NL  G+  H   ++     E+ ++ N
Sbjct: 310 PLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAV-ENDVVMN 368

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +LV+MYA+   + +AK +F  +  +D VT+ SLIAGY     G  AL LF  M      P
Sbjct: 369 ALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLP 428

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D +++V  LSAC   G ++ G K F      +     +     +++LY +   L  A+ +
Sbjct: 429 DAISVVNALSACVCLGDLLIG-KCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRV 487

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNT-GIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
            ++M    T   W  ++G   +  ++ G  +   E L +    N   +  I +  + TG
Sbjct: 488 FSEMNDRNT-VTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTG 545


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  308 bits (790), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 172/558 (30%), Positives = 300/558 (53%), Gaps = 34/558 (6%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
             WN +I+   R G  AEAL  +  M+   +     ++P  +KAC  + D+  G+  H  
Sbjct: 42  FSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQ 101

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
                ++  +FV +AL+ MY   G+++ AR++FD++ +RD VSW +MI  Y   G   +A
Sbjct: 102 AFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDA 161

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             LF ++  +  + +                                +LDS+  V  + A
Sbjct: 162 VSLFKDLLVDENDDD-----------------------------DAMFLDSMGLVSVISA 192

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD--LRHAYILFKMTAEKSII 377
           CS V A  L + IH   ++  +    +V N L+  Y++  +  +  A  +F    +K  +
Sbjct: 193 CSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRV 252

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEP-NYVTIASILPLCARVANLQHGKEFHCY 436
           ++NS++S Y     + E+  +FR + ++ V   N +T++++L   +    L+ GK  H  
Sbjct: 253 SYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQ 312

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
           ++R  +  + +++  S+++MY + G+V  A+  FD M  ++  ++T++IAGYG+ G    
Sbjct: 313 VIRMGL-EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAK 371

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           AL+LF  M  + ++P+++T V+VL+ACSH+GL VEG + F  M   +G+ P LEH+ CMV
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMV 431

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL GRAG L KA ++I +M   P S +W++LL AC+IH+N  + E +  +L E    N G
Sbjct: 432 DLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCG 491

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
           YY+L++++YA  G W  + +VR  M++ G+ K PG + ++       FL+ D  + Q ++
Sbjct: 492 YYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREK 551

Query: 677 IYPLLGGLTELMKDAGYV 694
           IY  L  L   + +AGYV
Sbjct: 552 IYEFLAELNRKLLEAGYV 569



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 131/517 (25%), Positives = 233/517 (45%), Gaps = 62/517 (11%)

Query: 14  SVSQL---EKFIPKKWKQPINNEHIMRINLLE---TLKDFAGRGNLSKAFEAFTRIRITA 67
           SVS+L   E+   ++    + N ++ + ++      + D A  G+ ++A  AF+ +R   
Sbjct: 12  SVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMR--K 69

Query: 68  ASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127
            S      SF   I  C  +  +  GKQ H  A   G + +  +   L+  Y++     +
Sbjct: 70  LSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLED 129

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY------PSV 181
           A  + +    R  + W  +I  Y  +G   +A+ ++K +       D+  +       SV
Sbjct: 130 ARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSV 189

Query: 182 LKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ--VDVARRLFDKMLER 238
           + AC  +        +HS  I    +  + V N L+  Y K G+  V VAR++FD+++++
Sbjct: 190 ISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDK 249

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           D VS+N+++S YA  G+  EAF++F  +    V+  V+T+N I                 
Sbjct: 250 DRVSYNSIMSVYAQSGMSNEAFEVFRRL----VKNKVVTFNAI----------------- 288

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
                      +++TV  L A SH GAL++GK IH   +R    +   V  ++I MY +C
Sbjct: 289 -----------TLSTV--LLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
             +  A   F     K++ +W +M++GY     A ++  LF  M  SGV PNY+T  S+L
Sbjct: 336 GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-- 476
             C+       G  +   +  R      L  +  +V++  R+G + +A   +DL+ R   
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA---YDLIQRMKM 452

Query: 477 --DEVTYTSLIAGYGIQGEGRVA----LKLFEEMNKN 507
             D + ++SL+A   I     +A     +LFE  + N
Sbjct: 453 KPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSN 489



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 167/350 (47%), Gaps = 19/350 (5%)

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
           + +V +WN++     R+G+    L   S MR    Y    +    + ACS +  +  GK+
Sbjct: 38  KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ 97

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
            H  A    Y     V +ALI MYS C  L  A  +F    ++ I++W SM+ GY     
Sbjct: 98  THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGN 157

Query: 392 AEESAFLFREMFRSGVEP------NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445
           A ++  LF+++     +       + + + S++  C+RV      +  H ++++R  F+ 
Sbjct: 158 ALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRG-FDR 216

Query: 446 HLLLWNSLVEMYARSGK--VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
            + + N+L++ YA+ G+  V  A+ +FD +  +D V+Y S+++ Y   G    A ++F  
Sbjct: 217 GVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRR 276

Query: 504 MNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           + KN++   + +T+  VL A SHSG +  G+   +++  + G+   +     ++D+Y + 
Sbjct: 277 LVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM-GLEDDVIVGTSIIDMYCKC 335

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
           G +  A++   +M      + W  ++    +H +       A K LE  P
Sbjct: 336 GRVETARKAFDRMKNKNVRS-WTAMIAGYGMHGH-------AAKALELFP 377


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  308 bits (790), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 177/544 (32%), Positives = 285/544 (52%), Gaps = 48/544 (8%)

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA----CHEWS--LFVHNALVSMYGKFGQV 225
           R D  +   ++K C      D GR++H  ++A     H+ +  LFV N+L SMY KFG +
Sbjct: 61  RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLL 120

Query: 226 DVARRLFDKMLERDAVSWNTMISAYAS-KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           D A R+FD M  R+ V+W T+++A AS  G  +EA +  V M+ +GV  N  T++++   
Sbjct: 121 DDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSV--- 177

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           LGAC+  G L     +H S V+      
Sbjct: 178 --------------------------------LGACTTPGMLT---AVHASTVKAGLDSD 202

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             VR++LI  Y +  DL     +F     + ++ WNS+++G+        +  LF  M  
Sbjct: 203 VFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKD 262

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +G   N  T+ S+L  C  +  L+ G++ H ++L+   ++  L+L N+L++MY + G + 
Sbjct: 263 AGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK---YDRDLILHNALLDMYCKCGSLE 319

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           +A ++F  M +RD ++++++++G    G+   AL++F+ M    + P+HVTMV VL ACS
Sbjct: 320 DADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACS 379

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H+GLV +G   F  M  ++GI P+ EH  CMVDL GRAG L++A E I  M   P S +W
Sbjct: 380 HAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIW 439

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
            TLLGAC++H+N  +  +AA ++L+  P++ G  VL++N YA    W    K    MRD 
Sbjct: 440 RTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDR 499

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEE 704
           G+RK PG +W++       F+  D S+  +  I   L  L   +K  GYV + EF  ++ 
Sbjct: 500 GMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDL 559

Query: 705 IVEE 708
             E+
Sbjct: 560 PTEQ 563



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 185/411 (45%), Gaps = 47/411 (11%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLI-SLYVRDGFYAEALCVYKQMQSRRIRG 173
           L + YA F L ++A  + +   +R  + W  ++ +L   DG   EAL     M+   +  
Sbjct: 110 LASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAP 169

Query: 174 DNFTYPSVLKACGE--MMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
           + +T+ SVL AC    M+       V + +D+     +FV ++L+  Y K G +D  RR+
Sbjct: 170 NAYTFSSVLGACTTPGMLTAVHASTVKAGLDS----DVFVRSSLIDAYVKLGDLDGGRRV 225

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           FD+M+ RD V WN++I+ +A  G    A +LF+ M++ G   N  T  ++          
Sbjct: 226 FDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSV---------- 275

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
                                    L AC+ +  L+ G+++H   ++  Y     + NAL
Sbjct: 276 -------------------------LRACTGMVMLEAGRQVHAHVLK--YDRDLILHNAL 308

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           + MY +C  L  A  LF    ++ +I+W++M+SG      + E+  +F  M   GV PN+
Sbjct: 309 LDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNH 368

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           VT+  +L  C+    ++ G  +   + R           N +V++  R+GK+ EA     
Sbjct: 369 VTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIH 428

Query: 472 LMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            MS   D V + +L+    +     +A     E+ K  ++PD      +LS
Sbjct: 429 GMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILK--LEPDDQGARVLLS 477



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 147/338 (43%), Gaps = 45/338 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ ++  C     L     +HA  +  GL+ +  +   L+  Y      +    + +  
Sbjct: 173 TFSSVLGACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEM 229

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+ + + G    A+ ++ +M+      +  T  SVL+AC  M+ ++ GR
Sbjct: 230 VTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGR 289

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            VH+ +   ++  L +HNAL+ MY K G ++ A  LF +M +RD +SW+TM+S  A  G 
Sbjct: 290 QVHAHV-LKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGK 348

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             EA ++F  M+ +GV  N +T   +                                  
Sbjct: 349 SVEALRVFDLMKSQGVAPNHVTMVGV---------------------------------- 374

Query: 316 GLGACSHVGALKLGKEIHGSAVR--GCYGEYENVRNALITMYSRCKDLRHAY-ILFKMTA 372
            L ACSH G ++ G     S  R  G   E E+  N ++ +  R   L  A   +  M+ 
Sbjct: 375 -LFACSHAGLVEDGWHYFRSMKRLFGIQPEREH-HNCMVDLLGRAGKLDEAVEFIHGMSL 432

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           E   + W ++L        A  +A+  RE+ +  +EP+
Sbjct: 433 EPDSVIWRTLLGACRMHKNASLAAYAAREILK--LEPD 468



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 14/244 (5%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G+   A E F R++    S +    +   ++  C  +  L  G+Q+HA    L  +
Sbjct: 244 FAQSGDGVGAIELFMRMKDAGFSSN--QGTLTSVLRACTGMVMLEAGRQVHAHV--LKYD 299

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           ++ +L   L+  Y       +A  L      R  + W+ ++S   ++G   EAL V+  M
Sbjct: 300 RDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLM 359

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFG----RVVHSCIDACHEWSLFVHNALVSMYGKF 222
           +S+ +  ++ T   VL AC     V+ G    R +        E     HN +V + G+ 
Sbjct: 360 KSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREH--HNCMVDLLGRA 417

Query: 223 GQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           G++D A      M LE D+V W T++ A   + +  L   A +  ++++ +     V+  
Sbjct: 418 GKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLS 477

Query: 279 NTIA 282
           NT A
Sbjct: 478 NTYA 481


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 185/649 (28%), Positives = 327/649 (50%), Gaps = 38/649 (5%)

Query: 47   FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
            ++ +G  SK F  F+ +R      D    +   ++  C      + G  +H+  +   L+
Sbjct: 523  YSHQGICSKCFLVFSDMRHHGLRPDAT--TLCSLMSVCASSDHFSHGSGIHSLCLRSSLD 580

Query: 107  KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
             +  ++  LV  Y++    ++A FL  N + R  + WN +IS YV++    +AL    Q+
Sbjct: 581  SSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQL 640

Query: 167  QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQV 225
                   ++ T+ S L AC     +  G++VH+ +     + +L V N+L++MYGK   +
Sbjct: 641  FHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSM 700

Query: 226  DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
            + A ++F  M   D VS+N +I  YA      +A Q+F  M+  G++ N IT   I G  
Sbjct: 701  EDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSF 760

Query: 286  LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
              + +                                      G+ +H   +R  +   E
Sbjct: 761  ASSNDLH----------------------------------NYGRPLHAYIIRTGFLSDE 786

Query: 346  NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
             V N+LITMY++C +L  +  +F     K+I++WN++++    L   EE+  LF +M  +
Sbjct: 787  YVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHA 846

Query: 406  GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            G + + V +A  L  CA +A+L+ G + H   ++  + ++  ++ N+ ++MY + GK+ E
Sbjct: 847  GNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVV-NAAMDMYGKCGKMDE 905

Query: 466  AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
               V    + R +  + +LI+GY   G  + A + F++M     KPD+VT VA+LSACSH
Sbjct: 906  MLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSH 965

Query: 526  SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
            +GLV +G   +  M S +G+ P ++H  C+VDL GR G   +A++ I +MP  P   +W 
Sbjct: 966  AGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWR 1025

Query: 586  TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            +LL + + H+N  IG   A+KLLE  P +   YVL++N+YA    W  + K+R+ M+ + 
Sbjct: 1026 SLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTIN 1085

Query: 646  VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            + K P C+W+   N  S F + D  +  A++IY  L  +   +++ GY+
Sbjct: 1086 INKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYI 1134



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/544 (25%), Positives = 251/544 (46%), Gaps = 42/544 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
            +  G L +A  A+ ++R      +   ++FA ++  CG ++    G Q+ +  I  GL+
Sbjct: 422 LSSNGYLEEALRAYRQMRRDGVPCNA--NAFATVVSLCGSLENEVPGLQVASQVIVSGLQ 479

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               +   L+T + +    ++A  L +       + WN +IS+Y   G  ++   V+  M
Sbjct: 480 NQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDM 539

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           +   +R D  T  S++  C        G  +HS C+ +  + S+ V NALV+MY   G++
Sbjct: 540 RHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKL 599

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A  LF  M  RD +SWNTMIS+Y       +A +   ++       N +T+++     
Sbjct: 600 SDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSS----- 654

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          LGACS  GAL  GK +H   ++       
Sbjct: 655 ------------------------------ALGACSSPGALIDGKMVHAIVLQLSLQRNL 684

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V N+LITMY +C  +  A  +F+      I+++N ++ GY  L+   ++  +F  M  +
Sbjct: 685 LVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSA 744

Query: 406 GVEPNYVTIASILPLCARVANLQ-HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           G++PNY+T+ +I    A   +L  +G+  H YI+R    ++  +  NSL+ MYA+ G + 
Sbjct: 745 GIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVA-NSLITMYAKCGNLE 803

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            + ++F+ ++ ++ V++ ++IA     G G  ALKLF +M     K D V +   LS+C+
Sbjct: 804 SSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCA 863

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
               + EG  Q   +    G+          +D+YG+ G +++  +++      P    W
Sbjct: 864 SLASLEEGM-QLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQC-W 921

Query: 585 ATLL 588
            TL+
Sbjct: 922 NTLI 925



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 222/476 (46%), Gaps = 48/476 (10%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFA--HIIFCC---GKVKALAQGKQLHACAIALGL 105
           G+  KAFE    +R       V L  FA   ++  C   G+ + +A G  +HA     GL
Sbjct: 322 GSHGKAFEMLRGMREPG----VPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGL 377

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             N  +   L+  Y S  + ++A  L      R  + W  L+     +G+  EAL  Y+Q
Sbjct: 378 MGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQ 437

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQ 224
           M+   +  +   + +V+  CG + +   G +V    I +  +  + V N+L++M+G  G+
Sbjct: 438 MRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGR 497

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           V  A +LFD+M E D +SWN MIS Y+ +G+  + F +F +M+  G+  +  T  ++   
Sbjct: 498 VHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSV 557

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           C  + +F                             SH      G  IH   +R      
Sbjct: 558 CASSDHF-----------------------------SH------GSGIHSLCLRSSLDSS 582

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFREMF 403
             V NAL+ MYS    L  A  LF   + + +I+WN+M+S Y   +C    A     ++F
Sbjct: 583 VTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQ-NCNSTDALKTLGQLF 641

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
            +   PN++T +S L  C+    L  GK  H  +L+ ++   +LL+ NSL+ MY +   +
Sbjct: 642 HTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSL-QRNLLVGNSLITMYGKCNSM 700

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            +A+ VF  M   D V+Y  LI GY +  +G  A+++F  M    IKP+++TM+ +
Sbjct: 701 EDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 756



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 221/488 (45%), Gaps = 44/488 (9%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFY---ASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           +H  A+ L L  +      L+ FY      S    A  L +    R P  W   +S  VR
Sbjct: 261 IHGLAVRLALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVR 320

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC---GEMMDVDFGRVVHSCID-ACHEWS 208
            G + +A  + + M+   +    F   S++ AC   G    +  G  +H+    A    +
Sbjct: 321 CGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGN 380

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +++  AL+ +YG  G V  A+RLF +M ER+ VSW  ++ A +S G  +EA + + +M+ 
Sbjct: 381 VYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRR 440

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
           +GV  N   + T+   C       G LE                 V GL   S V    L
Sbjct: 441 DGVPCNANAFATVVSLC-------GSLE---------------NEVPGLQVASQVIVSGL 478

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
             ++             +V N+LITM+     +  A  LF    E   I+WN+M+S Y+H
Sbjct: 479 QNQV-------------SVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSH 525

Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
                +   +F +M   G+ P+  T+ S++ +CA   +  HG   H   LR ++ +  + 
Sbjct: 526 QGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSL-DSSVT 584

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
           + N+LV MY+ +GK+ +A+ +F  MSRRD +++ ++I+ Y        ALK   ++    
Sbjct: 585 VINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTN 644

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
             P+H+T  + L ACS  G +++G K    +     +   L     ++ +YG+   +  A
Sbjct: 645 ESPNHLTFSSALGACSSPGALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDA 703

Query: 569 KEIITKMP 576
           +++   MP
Sbjct: 704 EKVFQSMP 711



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 30   INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
            I N++I+  N +       G G   +A + F  ++      D V    A  +  C  + +
Sbjct: 812  ITNKNIVSWNAIIAANVQLGHGE--EALKLFIDMQHAGNKLDRV--CLAECLSSCASLAS 867

Query: 90   LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISL 149
            L +G QLH   +  GL+ +  +V   +  Y      +    +V +  IR    WN LIS 
Sbjct: 868  LEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISG 927

Query: 150  YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL 209
            Y + G++ EA   +KQM +   + D  T+ ++L AC     VD G   ++ + +    S 
Sbjct: 928  YAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSP 987

Query: 210  FVHN--ALVSMYGKFGQVDVARRLFDKM--LERDAVSWNTMISA 249
             + +   +V + G+ G+   A +  ++M  L  D + W +++S+
Sbjct: 988  GIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLI-WRSLLSS 1030



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 208 SLFVHNALVSMYGKFGQVDVAR-----RLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           S F  N L++ Y  F Q D +       LFD+M +R   +W T +S     G    AF++
Sbjct: 50  SAFHRNTLLAFY--FRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVRCGRDGTAFEM 107

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
              M+E GV ++     ++   C R G  +G+
Sbjct: 108 LRGMRERGVPLSGFALASLVTACERRGRDEGI 139


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  308 bits (789), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 258/437 (59%), Gaps = 3/437 (0%)

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
           ++WN++  GC+R G  +  L    +MR+++  +D       L + + +  ++    +H  
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
            ++  +  Y+ V NALI MY++   L  A ++F    +K +++W S+++GY+H    EE+
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             LF +M  SGV P+ + +AS+L  CA +  +  G++ H  +++  +    L + NSLV 
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGL-ESSLSVDNSLVT 185

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+ G + +A   FD M  RD +++T+LI GY   G G+ +L+ +++M     KPD++T
Sbjct: 186 MYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYIT 245

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
            + +L ACSH+GL+  G+  FE M  +YGI P  EH+ACM+DL GR+G L +AK ++ +M
Sbjct: 246 FIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQM 305

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
              P + +W  LL AC++H+   +GE AA+ L E  P NS  YV+++NMY+A G W+  A
Sbjct: 306 VVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAA 365

Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
           ++R  MR  G+ K PG +W++  +  S F+ +D ++    EIY  +  +  L+K+AGYV 
Sbjct: 366 RIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVP 425

Query: 696 KEEFC--SEEEIVEEIG 710
              F     ++ V+E+G
Sbjct: 426 DMSFALHDTDDEVKELG 442



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 178/368 (48%), Gaps = 41/368 (11%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN LI   VR+GF  +AL  +++M+SR ++ D +T PSVL +   M  +     VH  
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            I    E    V+NAL+ MY K G++D A  +F KM+++D VSW ++++ Y+  G ++EA
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF +M+  GV                                   Y D +A    L A
Sbjct: 127 IKLFCKMRISGV-----------------------------------YPDQIAVASVLSA 151

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
           C+ +  +  G++IH + V+       +V N+L+TMY++C  +  A   F     + +I+W
Sbjct: 152 CAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISW 211

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
            +++ GY      + S   + +M  +G +P+Y+T   +L  C+    L  G+ +   + +
Sbjct: 212 TALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDK 271

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGE---GR 495
                     +  ++++  RSGK+ EAK + + M    D V + +L+A   +  E   G 
Sbjct: 272 VYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGE 331

Query: 496 VALK-LFE 502
           +A K LFE
Sbjct: 332 MAAKNLFE 339



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 8/218 (3%)

Query: 73  VLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           VL+SFA        +K +     +H   I  G E   ++   L+  YA     + A  + 
Sbjct: 47  VLNSFA-------SMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVF 99

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
                +  + W  L++ Y  +G Y EA+ ++ +M+   +  D     SVL AC E+  +D
Sbjct: 100 SKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMD 159

Query: 193 FGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
           FG+ +H+  + +  E SL V N+LV+MY K G +  A R FD M  RD +SW  +I  YA
Sbjct: 160 FGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYA 219

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
             G  K + Q + +M   G + + IT+  +   C   G
Sbjct: 220 QNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNG 257



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++  G+  +A + F ++RI+    D +  + A ++  C ++  +  G+Q+HA  +  GLE
Sbjct: 117 YSHNGSYEEAIKLFCKMRISGVYPDQI--AVASVLSACAELTVMDFGQQIHATLVKSGLE 174

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   LVT YA      +A    +N   R  + W  LI  Y ++G    +L  Y QM
Sbjct: 175 SSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQM 234

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQ 224
            +   + D  T+  +L AC     +  GR     +D  +  +     +  ++ + G+ G+
Sbjct: 235 IATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGK 294

Query: 225 VDVARRLFDKM-LERDAVSWNTMISA 249
           +  A+ L ++M +  DAV W  +++A
Sbjct: 295 LAEAKGLLNQMVVAPDAVVWKALLAA 320


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  308 bits (789), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 207/624 (33%), Positives = 323/624 (51%), Gaps = 56/624 (8%)

Query: 89  ALAQGKQLHACAIALGL-EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
            L +G+++H   +  GL +    L   LV  YA     + A  +      R  + WN +I
Sbjct: 389 GLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTII 448

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW 207
           S+  ++GF   A+  Y  M+   I   NF   S L +C  +  +  G+ VH   DA  +W
Sbjct: 449 SVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVH--CDAV-KW 505

Query: 208 SL----FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT----MISAYASKGLWKEA 259
            L     V NALV MYG  G    +  +F+ M E D VSWN+    M+S++A      E+
Sbjct: 506 GLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTA---ES 562

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            ++F  M   G+  N +T+  +                                   L A
Sbjct: 563 VEVFSNMMRSGLTPNKVTFVNL-----------------------------------LSA 587

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK-MTAEKSIIT 378
            S +  L+LGK++H   ++    E   V NAL++ Y++  D+     LF  M+  +  ++
Sbjct: 588 LSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVS 647

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WNSM+SGY +    +E+      M  S    +  T + +L  CA VA L+ G E H + +
Sbjct: 648 WNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGI 707

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           R  + ++ +++ ++L++MY++ G++  A  VF+ MS+++E ++ S+I+GY   G G  AL
Sbjct: 708 RSQLESD-VVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKAL 766

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           ++FEEM +N   PDHVT V+VLSACSH+GLV  G   FE M   +GI P +EH++C++DL
Sbjct: 767 EIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMED-HGILPHIEHYSCVIDL 825

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN---TGIGEWAAEKLLETRPENS 615
            GRAG L K +E I +MP  P + +W T+L AC+  ++     +G+ A+  LLE  P+N 
Sbjct: 826 LGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNP 885

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
             YVL +N YAATG W+  AK R  M    ++K  G +WV  G+    F+  D S+   +
Sbjct: 886 VNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTK 945

Query: 676 EIYPLLGGLTELMKDAGYVVKEEF 699
           EIY  L  L + +K+AGYV   EF
Sbjct: 946 EIYEKLNFLIQKIKNAGYVPMTEF 969



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 133/510 (26%), Positives = 221/510 (43%), Gaps = 43/510 (8%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           A  ++LH   +  GL  +  L   LV  YA  S    A  + +    R  + W  L+S Y
Sbjct: 73  AAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGY 132

Query: 151 VRDGFYAEALCVYKQM---QSRRIRGDNFTYPSVLKACGEMMD--VDFGRVVHSCID-AC 204
           V  G   EA  V+K M    S   R   FT+ SVL+AC +     + F   VH  +    
Sbjct: 133 VLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTI 192

Query: 205 HEWSLFVHNALVSMYGK--FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           +  +  V NAL+SMYG    G    A+++FD    RD ++WN ++S YA KG     F L
Sbjct: 193 YASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTL 252

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F+ M  +   +                           +R  E    S+ T   L +CS 
Sbjct: 253 FMAMLHDDSAI--------------------------ELRPNEHTFGSLITATSLSSCSS 286

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            G L    ++    ++        V +AL++ ++R   L  A  +F    E++ +T N +
Sbjct: 287 -GVLD---QVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGL 342

Query: 383 LSGYTHLDCAEESAFLF---REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           + G     C+EE+  +F   R+ F    +   V ++++         L  G+E H +ILR
Sbjct: 343 IVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILR 402

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             + +  + L N LV MYA+ G + +A  VF L+  RD V++ ++I+     G    A+ 
Sbjct: 403 TGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMM 462

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
            +  M +  I P +   ++ LS+C+   L+  GQ Q       +G+         +V +Y
Sbjct: 463 NYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQ-QVHCDAVKWGLDLDTSVSNALVKMY 521

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           G  G  +++ EI   M      + W +++G
Sbjct: 522 GDCGARSESWEIFNSMAEHDIVS-WNSIMG 550



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 198/459 (43%), Gaps = 71/459 (15%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  ++ L  G+Q+H  A+  GL+ +  +   LV  Y      + +  +  +      + W
Sbjct: 486 CASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSW 545

Query: 144 NLLISLYVRD-GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           N ++ + V      AE++ V+  M    +  +  T+ ++L A   +  ++ G+ VH+ + 
Sbjct: 546 NSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVV- 604

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                    H A+                     E +AV  N ++S YA  G      QL
Sbjct: 605 -------LKHGAI---------------------EDNAVD-NALMSCYAKSGDMDSCEQL 635

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M       + ++WN++  G +  G+ +  ++ +  M      LD     I L AC+ 
Sbjct: 636 FSSMSGRR---DAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACAS 692

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           V AL+ G E+H   +R        V +AL+ MYS+C  + +A  +F   ++K+  +WNSM
Sbjct: 693 VAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSM 752

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SGY      E++  +F EM R+G  P++VT  S+L  C+    +  G ++        M
Sbjct: 753 ISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYF------EM 806

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
             +H +L +  +E Y+          V DL+ R  ++                  LK+ E
Sbjct: 807 MEDHGILPH--IEHYS---------CVIDLLGRAGKL------------------LKIQE 837

Query: 503 EMNKNQIKPDHVTMVAVLSACSHS--GLVVEGQKQFERM 539
            +N+  +KP+ +    VL AC  S  G  ++  K+  RM
Sbjct: 838 YINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRM 876



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 124/239 (51%), Gaps = 6/239 (2%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLV 112
           +++ E F+ +  +  + + V  +F +++     +  L  GKQ+HA  +  G +E N V  
Sbjct: 560 AESVEVFSNMMRSGLTPNKV--TFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDN 617

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL-CVYKQMQSRRI 171
             +  +  S  + +        S  R  + WN +IS Y+ +G   E + CV+  M S ++
Sbjct: 618 ALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQM 677

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
             D  T+  VL AC  +  ++ G  +H+  I +  E  + V +AL+ MY K G++D A +
Sbjct: 678 L-DCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASK 736

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           +F+ M +++  SWN+MIS YA  GL ++A ++F EMQ  G   + +T+ ++   C   G
Sbjct: 737 VFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAG 795



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 116/259 (44%), Gaps = 12/259 (4%)

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406
           + N L+ +Y++   L  A  +F    E++ ++W  ++SGY      +E+  +F+ M   G
Sbjct: 93  LSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEG 152

Query: 407 VE---PNYVTIASILPLCARVAN--LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-S 460
            E   P   T  S+L  C       L    + H  ++ + ++  +  + N+L+ MY   S
Sbjct: 153 SEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHG-LVSKTIYASNTTVCNALISMYGNCS 211

Query: 461 GKVP-EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN----QIKPDHVT 515
             +P +A+ VFD    RD +T+ +L++ Y  +G       LF  M  +    +++P+  T
Sbjct: 212 VGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHT 271

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
             ++++A S S        Q        G    L   + +V  + R G+L++AK+I   +
Sbjct: 272 FGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINL 331

Query: 576 PYTPTSAMWATLLGACQIH 594
                  +   ++G  + H
Sbjct: 332 KERNAVTLNGLIVGLVKQH 350



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ ++  C  V AL +G ++HA  I   LE + V+   L+  Y+     + A  +  + 
Sbjct: 682 TFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSM 741

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +    WN +IS Y R G   +AL ++++MQ      D+ T+ SVL AC     VD G 
Sbjct: 742 SQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGL 801

Query: 196 VVHSCIDACHEWSLFVH----NALVSMYGKFGQVDVARRLFDKM-LERDAVSWNT-MISA 249
                 +   +  +  H    + ++ + G+ G++   +   ++M ++ + + W T +++ 
Sbjct: 802 ---DYFEMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVAC 858

Query: 250 YASK-----GLWKEAFQLFVEMQEE 269
             SK      L KEA ++ +E++ +
Sbjct: 859 RQSKDGDRIDLGKEASRMLLELEPQ 883


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  308 bits (789), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 192/650 (29%), Positives = 317/650 (48%), Gaps = 40/650 (6%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVV-LDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           +A  G++ ++   F  +R     HD V   + + ++   G V     G+ +H   + +G 
Sbjct: 337 YAQNGHIEESSRIFNLMR---RFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGF 393

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +    +   L+  YA       A  + +    +  + WN L++ +V DG   +AL +   
Sbjct: 394 DSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCS 453

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVHNALVSMYGKFGQ 224
           M       +  T+ S L AC      D GR++H  +     + +  + NALVSMYGK G 
Sbjct: 454 MIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGG 513

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +  +RR+  +M  RD V+WN +I  YA      +A   F  ++ EGV  N IT  ++   
Sbjct: 514 MSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSA 573

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           CL  G+                                   L+ GK +H   V   +   
Sbjct: 574 CLVPGDL----------------------------------LERGKPLHAYIVSAGFESD 599

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           E+V+N+LITMY++C DL  +  LF     +SIITWN++L+   H    EE   L  +M  
Sbjct: 600 EHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRS 659

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G+  +  + +  L   A++A L+ G++ H   ++   F     ++N+  +MY++ G++ 
Sbjct: 660 FGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLG-FELDCFIFNAAADMYSKCGEIG 718

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           E   +      R   ++  LI+  G  G      + F EM +  IKP HVT V++L+ACS
Sbjct: 719 EVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACS 778

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV +G   ++ +   +G+ P +EH  C++DL GR+G L +A+  I+KMP  P   +W
Sbjct: 779 HGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVW 838

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
            +LL +C+IHR+   G  AAE L +  PE+   +VL +NM+A TG W+ +  VR  M   
Sbjct: 839 RSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFK 898

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            ++K   C+WV   +  S F + D ++ Q  EIY  L  + +L+K++GYV
Sbjct: 899 NIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV 948



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 132/520 (25%), Positives = 236/520 (45%), Gaps = 41/520 (7%)

Query: 78  AHIIFCCGKVKAL-AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           A ++  CG+  ++  +G Q+H      GL  +  +   ++  Y  + L + +  + E   
Sbjct: 163 ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 222

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR- 195
            R  + W  L+  Y   G   E + +YK M+   +  +  +   V+ +CG + D   GR 
Sbjct: 223 DRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQ 282

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           ++   I +  E  L V N+L+SM+G  G VD A  +F+++ ERD +SWN++++AYA  G 
Sbjct: 283 IIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGH 342

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
            +E+ ++F  M+    EVN  T +T+                                  
Sbjct: 343 IEESSRIFNLMRRFHDEVNSTTVSTL---------------------------------- 368

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L     V   K G+ IHG  V+  +     V N L+ MY+       A ++FK    K 
Sbjct: 369 -LSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKD 427

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +I+WNS+++ + +   + ++  +   M R+G   NYVT  S L  C        G+  H 
Sbjct: 428 LISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHG 487

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            ++   +F+   ++ N+LV MY + G +  ++ V   M RRD V + +LI GY    +  
Sbjct: 488 LVVVSGLFDNQ-IIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPD 546

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-C 554
            AL  F+ +    +  +++T+V+VLSAC   G ++E  K         G F   EH    
Sbjct: 547 KALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAG-FESDEHVKNS 605

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           ++ +Y + G L+ ++++   +    +   W  +L A   H
Sbjct: 606 LITMYAKCGDLSSSQDLFNGLD-NRSIITWNAILAANAHH 644



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/501 (23%), Positives = 232/501 (46%), Gaps = 42/501 (8%)

Query: 93  GKQLHACAIALGLEKNPVL-VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           G+ LHA  +  GL +  VL    L+  Y  F     A +L +   +R  + WN ++S  V
Sbjct: 77  GRALHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIV 135

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV-DFGRVVHSCIDACHEWS-L 209
           R G Y E +  +++M    I+  +F   S++ ACG    +   G  VH  +      S +
Sbjct: 136 RVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 195

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
           +V  A++ +YG +G V  +R++F++M +R                               
Sbjct: 196 YVSTAILHLYGVYGLVSCSRKVFEEMPDR------------------------------- 224

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
               NV++W ++  G    G  + V+++   MR +    +  +  + + +C  +    LG
Sbjct: 225 ----NVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLG 280

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           ++I G  ++        V N+LI+M+    ++ +A  +F   +E+  I+WNS+++ Y   
Sbjct: 281 RQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQN 340

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
              EES+ +F  M R   E N  T++++L +   V + + G+  H  +++   F+  + +
Sbjct: 341 GHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMG-FDSVVCV 399

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N+L+ MYA +G+  EA  VF  M  +D +++ SL+A +   G    AL +   M +   
Sbjct: 400 CNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGK 459

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
             ++VT  + L+AC       +G +    +  + G+F        +V +YG+ G ++ ++
Sbjct: 460 SVNYVTFTSALAACFSPEFFDKG-RILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSR 518

Query: 570 EIITKMPYTPTSAMWATLLGA 590
            ++ +MP     A W  L+G 
Sbjct: 519 RVLLQMPRRDVVA-WNALIGG 538



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 115/524 (21%), Positives = 231/524 (44%), Gaps = 44/524 (8%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +S + +I  CG +K  + G+Q+    I  GLE    +   L++ + +    + A ++   
Sbjct: 262 NSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQ 321

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
            + R  + WN +++ Y ++G   E+  ++  M+      ++ T  ++L   G++    +G
Sbjct: 322 ISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWG 381

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H   +    +  + V N L+ MY   G+ + A  +F +M  +D +SWN++++++ + 
Sbjct: 382 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVND 441

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G   +A  +   M   G  VN +T+ +                                 
Sbjct: 442 GRSLDALGILCSMIRTGKSVNYVTFTS--------------------------------- 468

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC        G+ +HG  V     + + + NAL++MY +   +  +  +      
Sbjct: 469 --ALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPR 526

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN-LQHGKE 432
           + ++ WN+++ GY   +  +++   F+ +   GV  NY+T+ S+L  C    + L+ GK 
Sbjct: 527 RDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKP 586

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H YI+  A F     + NSL+ MYA+ G +  ++ +F+ +  R  +T+ +++A     G
Sbjct: 587 LHAYIV-SAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHG 645

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G   LKL  +M    +  D  +    LSA +   ++ EGQ Q   +    G       F
Sbjct: 646 HGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQ-QLHGLAVKLGFELDCFIF 704

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAM--WATLLGACQIH 594
               D+Y + G +    E++  +P +   ++  W  L+ A   H
Sbjct: 705 NAAADMYSKCGEIG---EVVKMLPPSVNRSLPSWNILISALGRH 745


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 179/543 (32%), Positives = 275/543 (50%), Gaps = 51/543 (9%)

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVH 212
           G   +AL  +  M  R    D+FTY  ++KA      V   R VHS  +        FV 
Sbjct: 419 GAPRDALAAFSAMPRR----DSFTYSFLIKAL-SAAGVAPVRAVHSHVVKLGSVEDTFVG 473

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           NAL+  Y K G    AR++FD+M ERD VSWNT ++A   +G      +LF EM E+   
Sbjct: 474 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK--- 530

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            + ++WNTI  G  + G  +   EL  RM   E  + S +T                   
Sbjct: 531 -DTVSWNTILDGYTKAGEVEAAFELFQRM--PERNVVSWST------------------- 568

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
                             +++ Y +  DL  A ++F     K+++TW  M+S        
Sbjct: 569 ------------------MVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 610

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           +E+  LF +M  + VE +   + SIL  CA   +L  GK  H Y+ +R +      + N+
Sbjct: 611 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNL-GRSTHVCNA 669

Query: 453 LVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           L++M+ + G V  A  VFD  + ++D V++ S+I G+ + G G  AL+LF +M +    P
Sbjct: 670 LIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNP 729

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D VTM+ VLSAC+H G V EG++ F  M   YGI PQ+EH+ CM+DL GR GL+ +A ++
Sbjct: 730 DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 789

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I  MP+ P   +W +LL AC++H+N    E A  +L + +P N+G Y +++N+YA  G W
Sbjct: 790 IKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQW 849

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
             +AK R  M+  G +K  G +WV+    F  F V D  +  + +I  ++  L+  +K  
Sbjct: 850 SDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHV 909

Query: 692 GYV 694
           G V
Sbjct: 910 GCV 912



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 210/478 (43%), Gaps = 55/478 (11%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQG-----KQLHACAIALGL 105
           G+   A     R  + A S     DSF +       +KAL+       + +H+  + LG 
Sbjct: 411 GSAPTALGGAPRDALAAFSAMPRRDSFTYSFL----IKALSAAGVAPVRAVHSHVVKLGS 466

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
            ++  +   L+  Y+    +++A  + +    R  + WN  ++  VR+G  A    ++ +
Sbjct: 467 VEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDE 526

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           M  +    D  ++ ++L    +  +V+             E ++   + +VS Y K G +
Sbjct: 527 MPEK----DTVSWNTILDGYTKAGEVE---AAFELFQRMPERNVVSWSTMVSGYCKKGDL 579

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           ++AR +FDKM  ++ V+W  M+SA A KGL  EA +LF +M+E  VE++V          
Sbjct: 580 EMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDV---------- 629

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                     A V  L AC+  G+L LGK IH    +   G   
Sbjct: 630 -------------------------AAVVSILAACAESGSLSLGKRIHRYVRKRNLGRST 664

Query: 346 NVRNALITMYSRCKDLRHA-YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           +V NALI M+ +C  +  A Y+    T +K  ++WNS++ G+      +++  LF +M +
Sbjct: 665 HVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQ 724

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G  P+ VT+ ++L  C  +  +  G+     + R       +  +  ++++  R G + 
Sbjct: 725 QGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIK 784

Query: 465 EAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           EA  +   M    +EV + SL++   +      A     E++K  ++P +    AVLS
Sbjct: 785 EAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSK--LQPSNAGNYAVLS 840



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 95/208 (45%), Gaps = 10/208 (4%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           A +G + +A + F +++  +   DV   +   I+  C +  +L+ GK++H       L +
Sbjct: 605 AQKGLVDEAGKLFAQMKEASVELDVA--AVVSILAACAESGSLSLGKRIHRYVRKRNLGR 662

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNI-RYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           +  +   L+  +      N A ++ +   + +  + WN +I  +   G   +AL ++ QM
Sbjct: 663 STHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQM 722

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV----HNALVSMYGKF 222
           + +    D  T  +VL AC  M  VD GR   S ++   ++ +      +  ++ + G+ 
Sbjct: 723 KQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNME--RDYGIMPQIEHYGCMIDLLGRG 780

Query: 223 GQVDVARRLFDKML-ERDAVSWNTMISA 249
           G +  A  L   M  E + V W +++SA
Sbjct: 781 GLIKEAVDLIKSMPWEPNEVIWGSLLSA 808


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  308 bits (788), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 176/565 (31%), Positives = 304/565 (53%), Gaps = 21/565 (3%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS- 199
           + WN +++ Y + G + +ALC++  M+    R D FT+ + L AC  + ++  G  +H+ 
Sbjct: 37  VAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQ 96

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +  C   SL V N+L+ MYGK      ARR+F++M   + VSW +++ AY S GL+  
Sbjct: 97  VVVSGCQS-SLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDV 155

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  +F  M ++ VE   I WN +  G  + G+ +  L L  +MR      D       + 
Sbjct: 156 ARVVFDGMPKK-VE---IAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVN 211

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGE----YENVR-------NALITMYSRCKDLRHAYIL 367
           A   +     G  +HG  ++  + +    +E++        NA+I  + +  D   A+++
Sbjct: 212 ALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLV 271

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F++  EK++++W SM++GY      E++   F +M  + ++P+  T  ++L  C+ +A L
Sbjct: 272 FQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATL 331

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            HGK  H  I+    F+ ++ + N LV MYA+ G +  + + F  +  +D V++ +++ G
Sbjct: 332 GHGKMIHGSIIHYG-FHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFG 390

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
            G+ G    AL+L+EEM  + +KPD VT + +L  CSHSGL+ +GQ  FE M S+YG+  
Sbjct: 391 LGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQ 450

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYT--PTSAMWATLLGACQIHRNTGIGEWAAE 605
           + EH  CMVDL GR G L +A+E++ +   T    +++   LLGAC  H    +G    E
Sbjct: 451 ETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLGACFAHSEVRMGANLGE 510

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
            L    P+    YVL++N+Y  +G W +   VR  M D GV+K+PGC+W++  N  + F+
Sbjct: 511 YLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVFV 570

Query: 666 VDDTSNVQAQEIYPLLGGLTELMKD 690
             + S+   +E+  +L  L   M++
Sbjct: 571 AGNHSHPYMEELCKILNFLKFEMRN 595



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 205/467 (43%), Gaps = 45/467 (9%)

Query: 30  INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKA 89
           I N    R     TL   AG G L +  +   ++ ++     + +          G    
Sbjct: 64  IANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPV----------GNSLI 113

Query: 90  LAQGKQLHACAIALGLEK----NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
              GK L A +     E+    N V    L+  Y S  L++ A  + +    +  + WN+
Sbjct: 114 DMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNI 173

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH 205
           +IS Y + G     L ++K+M+   ++ D +T+ +++ A  E+ +  +G ++H  I    
Sbjct: 174 MISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFII--- 230

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
                          K G  DV  ++F+ +     VSWN MI A+   G   EAF +F  
Sbjct: 231 ---------------KSGWDDVM-KVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVF-- 272

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
             +   E NV++W ++  G  R G+ +  L    +M       D       L ACS +  
Sbjct: 273 --QLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLAT 330

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           L  GK IHGS +   +  Y +V N L+ MY++C D++ +   FK    K +++WN+ML G
Sbjct: 331 LGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFG 390

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK---EFHCYILRRAM 442
                 A ++  L+ EM  SG++P+ VT   +L  C+    ++ G+   E    +   + 
Sbjct: 391 LGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQ 450

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--RDEVTYTSLIAG 487
             EH++    +V++  R G + +A+ + D  SR  R E +    + G
Sbjct: 451 ETEHVV---CMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLG 494



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 172/412 (41%), Gaps = 83/412 (20%)

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           LF   + +    K G++  ARRLFD+M  +D V+WN M+++Y+  GL ++A  LF     
Sbjct: 5   LFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLF----- 59

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
                                           MR   +  D       L AC+ +G L+ 
Sbjct: 60  ------------------------------HHMRIANSRPDRFTFTATLSACAGLGELRR 89

Query: 329 GKEIHGS-AVRGCYGEYENVRNALITMYSRCK---------------------DLRHAY- 365
           G +IH    V GC      V N+LI MY +C                       L  AY 
Sbjct: 90  GMKIHAQVVVSGCQSSLP-VGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYT 148

Query: 366 ---------ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
                    ++F    +K  I WN M+SGY      E    LF++M    ++P+  T ++
Sbjct: 149 SSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSA 208

Query: 417 ILPLCARVANLQHGKEFHCYILRRA------MFNEHLLL----WNSLVEMYARSGKVPEA 466
           ++     +    +G   H +I++        +F    +L    WN++++ + + G   EA
Sbjct: 209 LVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEA 268

Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
             VF L   ++ V++TS+I GY   G G  AL  F +M +N I+PD  T  AVL ACS  
Sbjct: 269 FLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSL 328

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA----KEIITK 574
             +  G K        YG    ++    +V++Y + G +  +    KEI+ K
Sbjct: 329 ATLGHG-KMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGK 379



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
           + HL    S +   A+ G++  A+ +FD M  +D V + +++A Y   G  + AL LF  
Sbjct: 2   HSHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHH 61

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
           M     +PD  T  A LSAC+  G +  G K   ++  + G    L     ++D+YG+  
Sbjct: 62  MRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVV-VSGCQSSLPVGNSLIDMYGKCL 120

Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGA 590
               A+ +  +M        W +LL A
Sbjct: 121 SATSARRVFEEMSIM-NEVSWCSLLFA 146


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  308 bits (788), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 183/607 (30%), Positives = 306/607 (50%), Gaps = 56/607 (9%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN----------SNI 137
           K++ + KQ+HA  I     ++   +P +       SL      L ++          +N 
Sbjct: 37  KSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADSIQNLWYASSLANF 96

Query: 138 RYPLP---WNLLI-SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
            +  P   +N +I SL   +  +     +Y+QM    +  D +T P +LKAC +      
Sbjct: 97  CHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIE 156

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
              +H+  I      +LFV N L+  Y   G ++   ++FD                   
Sbjct: 157 ALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFD------------------- 197

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                           +G   ++I+W T+     + G     +    RM       D + 
Sbjct: 198 ----------------QGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTA---DRMT 238

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNALITMYSRCKDLRHAYILFKM 370
            V+ L ACS +G   LGK+I        +  + +V   NAL+ MY +C     A  LF +
Sbjct: 239 LVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHL 298

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              K++++WNSM+SG  H    +E+  +FR M   G++P+ VT+  +L  CA + +L+ G
Sbjct: 299 MPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELG 358

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H YI +  M  +  +  N+LV+MYA+ G + +A  VF  M  +D  +YT++I G+ +
Sbjct: 359 KWVHSYIDKNHMKADGYVA-NALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAM 417

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G+   AL +F EM +  ++PDHVT+V VLSACSH+GL+ EG++ F+ M+ +Y + PQ E
Sbjct: 418 HGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTE 477

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL GRAGL+++A+    KMP  P +++W +LLGAC+IH    +GE   +KL+E 
Sbjct: 478 HYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEM 537

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            PE  G Y+L++N+Y++   W    K R  M+   ++K PGC+ ++   +   F   + S
Sbjct: 538 EPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMVHEFRKGEKS 597

Query: 671 NVQAQEI 677
           + +++E+
Sbjct: 598 HPKSREM 604



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 190/403 (47%), Gaps = 45/403 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +  +++  C +  A  +  Q+HA +I  GL  N  +   L+ FYA  S +  A   V + 
Sbjct: 140 TLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYA-VSGFIEAVEKVFDQ 198

Query: 136 NIRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
              + L  W  LI  Y + G+ +EA+  + +M       D  T   VL AC ++ D   G
Sbjct: 199 GPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNC---TADRMTLVVVLSACSQLGDFTLG 255

Query: 195 RVVHSCID----ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           + + + +D      H   +F+ NAL+ MY K GQ  +AR+LF  M  ++ VSWN+MIS  
Sbjct: 256 KKILAYMDHHLFDVHS-DVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGL 314

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           A +GL+KEA  +F  MQ  G++                                    DS
Sbjct: 315 AHQGLFKEALHMFRRMQTMGLKP-----------------------------------DS 339

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           V  V  L +C+++G L+LGK +H    +        V NAL+ MY++C  +  A+++F+ 
Sbjct: 340 VTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQA 399

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              K + ++ +M+ G+     A+ +  +F EM R GV P++VT+  +L  C+    L+ G
Sbjct: 400 MKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEG 459

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           +     + R          +  +V++  R+G + EA++  + M
Sbjct: 460 RRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKM 502


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  308 bits (788), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 185/566 (32%), Positives = 293/566 (51%), Gaps = 71/566 (12%)

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEM 188
           +++ S  R  + +N+L+        + +AL ++  M  Q      D++TYP  LK+C   
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 189 MDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
             +  GR +HS       + ++FV ++ +SMY + G+ D                     
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPD--------------------- 174

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
                     +A+Q+F EMQ      +V++WN +  G    G F   +++   +   +  
Sbjct: 175 ----------DAYQMFEEMQYR----DVVSWNAMISGFAHAGLFGRAMDVFRELVALQCP 220

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
                T+  +          +GK                         +R +D+     +
Sbjct: 221 KPDAGTMASILP-------SMGK-------------------------ARVEDIALLKGV 248

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F     K +I+WN+ML+ YT+ +   E+  LF  M + G+EP+ VT+A++LP C  V+ L
Sbjct: 249 FDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSAL 308

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
             GK  H  I RR M +  +LL N+L++MYA  G + EA+ VFD M  RD V++TS+I+ 
Sbjct: 309 SLGKRIHEVIKRRRMCSS-MLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISA 367

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           YG  G GR A+ LFE+M    ++PD +  VA+L+ACSH+GL+  G+  F  MTS + I P
Sbjct: 368 YGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAP 427

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
           +LEH+ACMVDL GRAG + +A + I  MP  P   +W  LLGAC+IH N  IG  AA+ L
Sbjct: 428 KLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSL 487

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
           L   P+ +GYYVL++N+YA  G W  ++ VR+ M   G++K+PG +  + G+    F + 
Sbjct: 488 LRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIG 547

Query: 668 DTSNVQAQEIYPLLGGLTELMKDAGY 693
           DTS+ Q++ IY  L  L   +++ GY
Sbjct: 548 DTSHPQSKMIYKKLSELLRRIREMGY 573



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 171/417 (41%), Gaps = 69/417 (16%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C     L  G+Q+H+    LGL+ N  +    ++ YA     ++A  + E    R  + W
Sbjct: 132 CAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSW 191

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRI-RGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202
           N +IS +   G +  A+ V++++ + +  + D  T  S+L + G+               
Sbjct: 192 NAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK--------------- 236

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                             +   + + + +FD+M  +  +SWN M++ Y +  +  EA +L
Sbjct: 237 -----------------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVEL 279

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F+ MQ++G+E + +T  T+                                   L +C  
Sbjct: 280 FMRMQKDGIEPDAVTLATV-----------------------------------LPSCGE 304

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           V AL LGK IH    R        + NAL+ MY+ C  L+ A  +F     + +++W S+
Sbjct: 305 VSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSI 364

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +S Y       E+  LF +M   G+EP+ +   +IL  C+    L  GK +   +     
Sbjct: 365 ISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFH 424

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVAL 498
               L  +  +V++  R+G + EA     +M  + +E  + +L+    I     + L
Sbjct: 425 IAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGL 481



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A E F R++      D V  + A ++  CG+V AL+ GK++H       +  + +L   
Sbjct: 275 EAVELFMRMQKDGIEPDAV--TLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENA 332

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  YA+      A  + ++   R  + W  +IS Y R G   EA+ ++++M  + +  D
Sbjct: 333 LMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPD 392

Query: 175 NFTYPSVLKACGEMMDVDFGR 195
           +  + ++L AC     +D G+
Sbjct: 393 SIAFVAILAACSHAGLLDMGK 413


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 202/691 (29%), Positives = 341/691 (49%), Gaps = 52/691 (7%)

Query: 3   PSSSRLILNGL--SVSQLEKFIP-KKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEA 59
           P++S  + N L  +  +L   +P ++    +   + +  NLL  +  ++  G    + E 
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLL--IDAYSREGLAPLSLET 96

Query: 60  FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
             R R   A  DV   S+A  +  C +   L  G+ +HA AI  GL     +   LV+ Y
Sbjct: 97  LARAR--RAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMY 154

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYP 179
           +       A  + + +  R  + WN L+S YVR G   E + V+  M+   +  ++F   
Sbjct: 155 SKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALG 214

Query: 180 SVLKACGEMMD--VDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           SV+K C    D  +D    VH C I A  +  +F+ +A++ MY K G +  A  LF  + 
Sbjct: 215 SVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ 274

Query: 237 ERDAVSWNTMISAYA------SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           E + V +NTMI+ +        K +  EA  L+ E+Q  G++    T++++         
Sbjct: 275 EPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSV--------- 325

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                                     L AC+  G L+ GK+IHG  ++  + E + + +A
Sbjct: 326 --------------------------LRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSA 359

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI +Y     +   +  F+ + +  I+TW +M+SG    +  E++  LF E   +G++P+
Sbjct: 360 LIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPD 419

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             TI+S++  CA +A  + G++  C+  +   F+   ++ NS V MYARSG V  A   F
Sbjct: 420 LFTISSVMNACASLAVARAGEQIQCFATKSG-FDRFTVMGNSCVHMYARSGDVDAATRRF 478

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
             M   D V+++++I+ +   G  R AL  F+EM   ++ P+ +T + VL+ACSH GLV 
Sbjct: 479 QEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVD 538

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           EG + +E MT  YG+ P ++H  C+VDL GRAG L  A+  I+   +     +W +LL +
Sbjct: 539 EGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLAS 598

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           C+IHR+   G+  A +++E  P +S  YV++ NMY   G     +K R  M+  GV+K P
Sbjct: 599 CRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEP 658

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           G +W++       F+  D S+ ++  IY  L
Sbjct: 659 GLSWIELKCGVHSFVAGDKSHPESSAIYTKL 689


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 189/603 (31%), Positives = 313/603 (51%), Gaps = 53/603 (8%)

Query: 105 LEKNPVLVPK--------LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           L+ NP   P+        L+  Y    L   AC L      R  + W  +I  +     Y
Sbjct: 31  LQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHY 90

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNA 214
            +A  ++ +M    ++ + FT  SVLKAC  M  +  G + HS +   H  + S++V NA
Sbjct: 91  HQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHS-LATKHGIDRSVYVQNA 149

Query: 215 LVSMYG-KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           L+ MY      +D A  +F+ +  + AVSW T+I+ +                       
Sbjct: 150 LLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTH--------------------- 188

Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
                        R   + G+L    +M  ++   +S +  I   AC+ + +   GK+IH
Sbjct: 189 -------------RGDGYSGLLAF-RQMLLEDVGPNSFSFSIAARACASISSYSCGKQIH 234

Query: 334 GSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
            +  +  YG + +  V N+++ MY RC  L  A   F    EK++ITWN++++GY   D 
Sbjct: 235 AAVTK--YGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSD- 291

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
           + ES  LF +M   G +PN  T  SI   CA +A L  G++ H  I+RR  F++++ L N
Sbjct: 292 SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRG-FDKNVALIN 350

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL++MYA+ G + ++  +F  M  RD V++T+++ GYG  G G+ A+KLF+EM ++ I+P
Sbjct: 351 SLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQP 410

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D +  + VL  CSH+GLV +G K F  M   Y I P  E + C+VDL GRAG + +A ++
Sbjct: 411 DRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQL 470

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           +  MP+ P  ++W  LLGAC+ ++ + +G  AA+++L+ RP  +G Y+L++ +YAA G W
Sbjct: 471 VENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKW 530

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
            + AK+R  M+ +  +K  G +W++  N    F+V        + ++ ++  L   MKD 
Sbjct: 531 GEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKDD 590

Query: 692 GYV 694
           G +
Sbjct: 591 GDI 593



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 201/433 (46%), Gaps = 48/433 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY-ASFSLYNNACFLVEN 134
           + + ++  C  +KAL+ G   H+ A   G++++  +   L+  Y AS +  ++A  +  +
Sbjct: 111 TMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFND 170

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             ++  + W  LI+ +   G     L  ++QM    +  ++F++    +AC  +     G
Sbjct: 171 IPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCG 230

Query: 195 RVVHSCIDACHEWSLF----VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           + +H+   A  ++ L     V N+++ MY +   +  A+R F ++ E++ ++WNT+I+ Y
Sbjct: 231 KQIHA---AVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY 287

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
             +    E+  LF +M  EG + N  T+ +I                             
Sbjct: 288 -ERSDSSESLSLFFQMGSEGYKPNCFTFTSIT---------------------------- 318

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                   AC+++  L  G+++HG  VR  + +   + N+LI MY++C  +  ++ LF  
Sbjct: 319 -------AACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCD 371

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              + +++W +M+ GY      +E+  LF EM +SG++P+ +    +L  C+    +  G
Sbjct: 372 MPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKG 431

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIA--- 486
            ++   +L     N    ++  +V++  R+G+V EA  + + M    DE  + +L+    
Sbjct: 432 LKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACK 491

Query: 487 GYGIQGEGRVALK 499
            Y +   G +A +
Sbjct: 492 AYKLSNLGNLAAQ 504



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 132/275 (48%), Gaps = 23/275 (8%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFC--CGKVKALAQGKQLHACAIALG 104
           F  RG+      AF ++ +     DV  +SF+  I    C  + + + GKQ+HA     G
Sbjct: 186 FTHRGDGYSGLLAFRQMLL----EDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYG 241

Query: 105 LEKNPVLVPKLVTFYASFSLYNNA--CF--LVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           L  +  ++  ++  Y   +   +A  CF  L E + I     WN LI+ Y R    +E+L
Sbjct: 242 LHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLIT----WNTLIAGYERSD-SSESL 296

Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMY 219
            ++ QM S   + + FT+ S+  AC  +  +  G+ VH  I     + ++ + N+L+ MY
Sbjct: 297 SLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMY 356

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G +  + +LF  M  RD VSW TM+  Y + G  KEA +LF EM + G++ + I + 
Sbjct: 357 AKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFM 416

Query: 280 TIAGGCLRTG-------NFKGVLELLSRMRTQETY 307
            +  GC   G        F+ +LE  +    QE Y
Sbjct: 417 GVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIY 451


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 193/646 (29%), Positives = 328/646 (50%), Gaps = 53/646 (8%)

Query: 54   SKAFEAFTRIRITAASHDVVL--DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
            S+  E+   + + A S+ V L   SF   +  C + +  A G+Q+H   + +GL+ +P +
Sbjct: 749  SEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYV 808

Query: 112  VPKLVTFYASFSLYNNA-----CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
               L++ Y+   +   A     C + +   I     WN +++ YV +     AL ++  M
Sbjct: 809  STSLLSMYSKCGMVGEAETVFSCVVDKRLEI-----WNAMVAAYVENDNGYSALELFGFM 863

Query: 167  QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
            + + +  D+FT  +V+  C      D+G+ VH+                           
Sbjct: 864  RQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHA--------------------------- 896

Query: 227  VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
                LF + ++      + +++ Y+  G   +A+ +F  M+E+    +++ W ++  G  
Sbjct: 897  ---ELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEK----DMVAWGSLISGLC 949

Query: 287  RTGNFKGVLELLSRMRTQETYL--DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
            + G FK  L++   M+  +  L  DS      + AC+ + AL  G ++HGS ++   G+ 
Sbjct: 950  KNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKT--GQV 1007

Query: 345  ENV--RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
             NV   ++LI +YS+C     A  +F     ++I+ WNSM+S Y+  +  E S  LF  M
Sbjct: 1008 LNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLM 1067

Query: 403  FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
               G+ P+ V+I S+L   +  A+L  GK  H Y LR  + ++  L  N+L++MY + G 
Sbjct: 1068 LSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLK-NALIDMYVKCGF 1126

Query: 463  VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
               A+++F  M  +  +T+  +I GYG  G+ R AL LF+E+ K    PD VT ++++SA
Sbjct: 1127 SKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISA 1186

Query: 523  CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
            C+HSG V EG+  FE M   YGI P++EH+A MVDL GRAG L +A   I  MP    S+
Sbjct: 1187 CNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSS 1246

Query: 583  MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
            +W  LL A + H N  +G  +AEKLL   PE    YV + N+Y   G  ++ AK+   M+
Sbjct: 1247 IWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGEMK 1306

Query: 643  DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688
            + G++K PGC+W++  ++ + F    +S+    EI+ +L  L   M
Sbjct: 1307 ERGLQKQPGCSWIEVSDISNVFFSGGSSSPIKAEIFKVLNRLKSNM 1352



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 126/516 (24%), Positives = 226/516 (43%), Gaps = 58/516 (11%)

Query: 76   SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN- 134
            +F  ++  C  +  L+ GK +H   I LG   +P +   LV  Y      + A  + +  
Sbjct: 563  TFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGW 622

Query: 135  ----SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYP---SVLKACGE 187
                 + R     N +I  Y +   + E +  +++M    +R D F+     SVL   G 
Sbjct: 623  SQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGN 682

Query: 188  MMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
                D G+ +H   +    +   F+  AL+ MY KFG                       
Sbjct: 683  FRRED-GKQIHGYMLRNSLDGDSFLKTALIDMYFKFG----------------------- 718

Query: 247  ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
                    L  +A+++FVE++++    NV+ WN +  G   +   +  LEL    ++   
Sbjct: 719  --------LSTDAWRVFVEIEDKS---NVVLWNVMIVGFGGSEICESSLELYMLAKSNSV 767

Query: 307  YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
             L S +    LGACS       G++IH   V+        V  +L++MYS+C  +  A  
Sbjct: 768  KLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAET 827

Query: 367  LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
            +F    +K +  WN+M++ Y   D    +  LF  M +  V P+  T+++++  C+    
Sbjct: 828  VFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGL 887

Query: 427  LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
              +GK  H  + +R +      + ++L+ +Y++ G   +A  VF  M  +D V + SLI+
Sbjct: 888  YDYGKSVHAELFKRPI-QSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLIS 946

Query: 487  GYGIQGEGRVALKLFEEM--NKNQIKPDHVTMVAVLSACS-----HSGLVVEGQKQFERM 539
            G    G+ + ALK+F +M  + + +KPD   M +V++AC+       GL V G     + 
Sbjct: 947  GLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHG--SMIKT 1004

Query: 540  TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
              +  +F      + ++DLY + GL   A ++ T M
Sbjct: 1005 GQVLNVFVG----SSLIDLYSKCGLPEMALKVFTSM 1036



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 216/491 (43%), Gaps = 43/491 (8%)

Query: 92   QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC-FLVENSNIRYPLPWNLLISLY 150
             GKQ+H   +   L+ +  L   L+  Y  F L  +A    VE  +    + WN++I  +
Sbjct: 687  DGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGF 746

Query: 151  VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSL 209
                    +L +Y   +S  ++  + ++   L AC +  +  FGR +H   +    +   
Sbjct: 747  GGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDP 806

Query: 210  FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            +V  +L+SMY K G V  A  +F  ++++    WN M++AY        A +LF  M+++
Sbjct: 807  YVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQK 866

Query: 270  GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
             V  +  T + +                                   +  CS  G    G
Sbjct: 867  SVLPDSFTLSNV-----------------------------------ISCCSMFGLYDYG 891

Query: 330  KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
            K +H    +        + +AL+T+YS+C     AY++FK   EK ++ W S++SG    
Sbjct: 892  KSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKN 951

Query: 390  DCAEESAFLFREM--FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
               +E+  +F +M      ++P+   + S++  CA +  L  G + H  +++      ++
Sbjct: 952  GKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQV-LNV 1010

Query: 448  LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
             + +SL+++Y++ G    A  VF  M   + V + S+I+ Y       ++++LF  M   
Sbjct: 1011 FVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQ 1070

Query: 508  QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLN 566
             I PD V++ +VL A S +  +++G K     T   GI P   H    ++D+Y + G   
Sbjct: 1071 GIFPDSVSITSVLVAISSTASLLKG-KSLHGYTLRLGI-PSDTHLKNALIDMYVKCGFSK 1128

Query: 567  KAKEIITKMPY 577
             A+ I  KM +
Sbjct: 1129 YAENIFKKMQH 1139



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 200/462 (43%), Gaps = 45/462 (9%)

Query: 140 PLPWNLLISLYVRDGFYAEALCVY-KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
           P   N  I   ++ G Y +AL +Y K   S  +    FT+PS+LKAC  + ++  G+ +H
Sbjct: 525 PASVNSGIRALIQKGEYLQALHLYTKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTIH 584

Query: 199 -SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-----RDAVSWNTMISAYAS 252
            S I     +  F+  +LV+MY K G +D A ++FD   +     RD    N+MI  Y  
Sbjct: 585 GSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFK 644

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
              +KE    F  M   GV  +  + + +     + GNF          R ++       
Sbjct: 645 FRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNF----------RRED------- 687

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
                           GK+IHG  +R        ++ ALI MY +      A+ +F    
Sbjct: 688 ----------------GKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIE 731

Query: 373 EKS-IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           +KS ++ WN M+ G+   +  E S  L+     + V+    +    L  C++  N   G+
Sbjct: 732 DKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGR 791

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + HC +++  + N+   +  SL+ MY++ G V EA++VF  +  +    + +++A Y   
Sbjct: 792 QIHCDVVKMGLDNDP-YVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVEN 850

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK-QFERMTSIYGIFPQLE 550
             G  AL+LF  M +  + PD  T+  V+S CS  GL   G+    E         P +E
Sbjct: 851 DNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIE 910

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
             + ++ LY + G    A  +   M      A  + + G C+
Sbjct: 911 --SALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCK 950


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 204/621 (32%), Positives = 320/621 (51%), Gaps = 85/621 (13%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           +++P+L    VT     S + +      N+N+   +  N LI+ YVR G    A+ V++ 
Sbjct: 11  KRSPLLTSSFVTLSKYVSSHTHQ-HEFNNNNV---IASNKLIASYVRCGDIDSAVRVFED 66

Query: 166 MQSRRIRGDNFTYPSVLKACGEMM-DVDFGR-----------VVHSCIDACHEWSLFVHN 213
           M+ +       T+ S+L A  +     ++ R           V ++ + ACH   L VH+
Sbjct: 67  MKVK----STVTWNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHD 122

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
           A              R  FD M  +D  SWNTMISA A  GL  EA +LF  M E+    
Sbjct: 123 A--------------RGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEK---- 164

Query: 274 NVITWNTIAGGCLRTGNFKGVLELL--SRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
           N ++W+ +  G +  G+    +E    + MR+  T+                        
Sbjct: 165 NCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITW------------------------ 200

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
                             A+IT Y +   +  A  LF+  + ++++TWN+M++GY     
Sbjct: 201 -----------------TAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGR 243

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
           AE+   LFR M  +GV+PN +++ S+L  C+ ++ LQ GK+ H  + +  + ++      
Sbjct: 244 AEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSD-TTAGT 302

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SLV MY++ G + +A  +F  + R+D V + ++I+GY   G G+ AL+LF+EM K  +KP
Sbjct: 303 SLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKP 362

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D +T VAVL AC+H+GLV  G + F  M   +GI  + EH+ACMVDL GRAG L++A ++
Sbjct: 363 DWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDL 422

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I  MP+ P  A++ TLLGAC+IH+N  + E+AA+ LLE  P  +  YV +AN+YAA   W
Sbjct: 423 IKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRW 482

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
           D +A +R  M+D  V KIPG +W++  +V   F   D  + +   I+  L  L + MK A
Sbjct: 483 DHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLA 542

Query: 692 GYVVKEEFCSE---EEIVEEI 709
           GYV   EF      EE+ E++
Sbjct: 543 GYVPDLEFVLHDVGEELKEQL 563


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 200/641 (31%), Positives = 321/641 (50%), Gaps = 45/641 (7%)

Query: 75  DSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLV 132
           D FA    +  C ++  +  G+Q+HA A+      + ++   LVT Y+   L ++   L 
Sbjct: 151 DQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLF 210

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDV 191
           E    +  + W  +I+ + + GF  EAL V+++M        N F + S  +ACG +   
Sbjct: 211 ERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSW 270

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           ++G  +H   I    +  L+V  +L  MY +F  +D AR  F ++   D VSW       
Sbjct: 271 EYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSW------- 323

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                                       N+I       G     L L S MR      D 
Sbjct: 324 ----------------------------NSIVNAYSVEGLLSEALVLFSEMRDSGLRPDG 355

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           +     L AC    AL  G+ IH   V+ G  G+  +V N+L++MY+RC DL  A  +F 
Sbjct: 356 ITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDV-SVCNSLLSMYARCSDLSSAMDVFH 414

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
              ++ ++TWNS+L+     +  EE   LF  + +S    + +++ ++L   A +   + 
Sbjct: 415 EIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEM 474

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGY 488
            K+ H Y  +  + ++ +L  N+L++ YA+ G + +A  +F++M + RD  +++SLI GY
Sbjct: 475 VKQVHAYAFKAGLVDDRMLS-NTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGY 533

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G  + AL LF  M    I+P+HVT + VL+ACS  G V EG   +  M   YGI P 
Sbjct: 534 AQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPT 593

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
            EH +C+VDL  RAG L +A   I +MP+ P   MW TLL A ++H +  +G+ AAE +L
Sbjct: 594 REHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGIL 653

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
              P +S  YVL+ N+YAA+G W++ A+++  MR  GV+K PG +WV        F+V+D
Sbjct: 654 NIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVED 713

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEI 709
            S+ +++EIY +L  +   M  AGYV K  +  +  IV+ I
Sbjct: 714 RSHPESEEIYAMLELIGMEMIKAGYVPKHSW--KHAIVDHI 752



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/520 (26%), Positives = 242/520 (46%), Gaps = 44/520 (8%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALG-------LEKNPVLVPKLVTFYASFSLYNNAC 129
           +A ++  C ++++L QG+++H   +A         L  N VL   L+T Y   +  ++A 
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            + +    R P+ W  +I+ +V++G   +AL ++  M       D F   S ++AC E+ 
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 190 DVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
           DV  GR VH+  + +     L V NALV+MY K G VD    LF+++ ++D +SW ++I+
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
            +A +G   EA Q+F +M  EG                                  E + 
Sbjct: 227 GFAQQGFEMEALQVFRKMIVEGSH-----------------------------HPNEFHF 257

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
            S        AC  VG+ + G++IHG +++        V  +L  MY+R K+L  A + F
Sbjct: 258 GS-----AFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAF 312

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                  +++WNS+++ Y+      E+  LF EM  SG+ P+ +T+  +L  C     L 
Sbjct: 313 YRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALY 372

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
           HG+  H Y+++  +  + + + NSL+ MYAR   +  A  VF  +  +D VT+ S++   
Sbjct: 373 HGRLIHSYLVKLGLDGD-VSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTAC 431

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
                    LKLF  +NK++   D +++  VLSA +  G   E  KQ        G+   
Sbjct: 432 AQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGY-FEMVKQVHAYAFKAGLVDD 490

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
                 ++D Y + G L+ A  +   M        W++L+
Sbjct: 491 RMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLI 530



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 198/428 (46%), Gaps = 47/428 (10%)

Query: 178 YPSVLKACGEMMDVDFGRVVH--------SCIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           Y +++ AC  +  +  GR VH        S  DA    +  + N L++MYG+    D AR
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           ++FD+M  R+ VSW ++I+A+   G   +A  LF  M                   LR+G
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSM-------------------LRSG 147

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                           T  D  A    + AC+ +G +  G+++H  A++   G    V+N
Sbjct: 148 ----------------TAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQN 191

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV-E 408
           AL+TMYS+   +   ++LF+   +K +I+W S+++G+       E+  +FR+M   G   
Sbjct: 192 ALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHH 251

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           PN     S    C  V + ++G++ H   ++  + +  L +  SL +MYAR   +  A+ 
Sbjct: 252 PNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL-DRDLYVGCSLSDMYARFKNLDSARV 310

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
            F  +   D V++ S++  Y ++G    AL LF EM  + ++PD +T+  +L AC     
Sbjct: 311 AFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDA 370

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           +  G+     +  + G+   +     ++ +Y R   L+ A ++  ++        W ++L
Sbjct: 371 LYHGRLIHSYLVKL-GLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK-DQDVVTWNSIL 428

Query: 589 GACQIHRN 596
            AC  H +
Sbjct: 429 TACAQHNH 436



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 215/480 (44%), Gaps = 47/480 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA +G   +A + F ++ I   SH      F      CG V +   G+Q+H  +I   L+
Sbjct: 228 FAQQGFEMEALQVFRKM-IVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 286

Query: 107 KNPVLVPKLVTFYASFSLYNNA---CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           ++  +   L   YA F   ++A    + +E  ++   + WN +++ Y  +G  +EAL ++
Sbjct: 287 RDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDL---VSWNSIVNAYSVEGLLSEALVLF 343

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKF 222
            +M+   +R D  T   +L AC     +  GR++HS  +    +  + V N+L+SMY + 
Sbjct: 344 SEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARC 403

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
             +  A  +F ++ ++D V+WN++++A A     +E  +LF                   
Sbjct: 404 SDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLF------------------- 444

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
                           S +   E  LD ++    L A + +G  ++ K++H  A +    
Sbjct: 445 ----------------SLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLV 488

Query: 343 EYENVRNALITMYSRCKDLRHAYILFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
           +   + N LI  Y++C  L  A  LF+ M   + + +W+S++ GY     A+E+  LF  
Sbjct: 489 DDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSR 548

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   G+ PN+VT   +L  C+RV  +  G  ++  +             + +V++ AR+G
Sbjct: 549 MRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAG 608

Query: 462 KVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           K+ EA +  D M    D + + +L+A   +  +  +  +  E +    I P H     +L
Sbjct: 609 KLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGI--LNIDPSHSAAYVLL 666


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 184/599 (30%), Positives = 304/599 (50%), Gaps = 37/599 (6%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LH  AI  GL+ +  +   L+  Y    L   A  +    + +  + +N ++    ++G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNA 214
           + +AL ++  M+   I   +FT+ S+L     M  +  G  VH+ +  +    ++FV+N+
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+  Y K   +D  RRLFD+M ERD VS+N +I+AYA         +LF EMQ+ G +  
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
           V+ + T+                                   L     +  + +GK+IH 
Sbjct: 337 VLPYATM-----------------------------------LSVAGSLPDVHIGKQIHA 361

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             V       + + NALI MYS+C  L  A   F   +EKS I+W ++++GY      EE
Sbjct: 362 QLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEE 421

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  LF +M R+G+ P+  T +SI+   + +A +  G++ H Y++R   +   +   + LV
Sbjct: 422 ALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG-YKSSVFSGSVLV 480

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MYA+ G + EA   FD M  R+ +++ ++I+ Y   GE + A+K+FE M      PD V
Sbjct: 481 DMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSV 540

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           T ++VL+ACSH+GL  E  K F  M   Y I P  EH+AC++D  GR G  ++ ++++ +
Sbjct: 541 TFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVE 600

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           MP+     +W ++L +C+IH N  +   AA+KL    P ++  YV+++N+YA  G W+  
Sbjct: 601 MPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDA 660

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           A V+  MRD GVRK  G +WV+       F  +D ++    EI   L  L + M   GY
Sbjct: 661 ACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGY 719



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 220/491 (44%), Gaps = 54/491 (10%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
            KN   +  +++ Y+S      A  L  +S  R    W +++  +   G  ++AL +++ 
Sbjct: 71  HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRA 130

Query: 166 MQSRRIRGDNFTYPSVLKACG------EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMY 219
           M    +  D  T  +VL   G          + FG   H          +FV N L+  Y
Sbjct: 131 MLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTH----------VFVCNTLLDAY 180

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G +  ARR+F +M ++DAV++N M+   + +GL  +A QLF  M+  G+     T++
Sbjct: 181 CKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFS 240

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           +I                                   L   + +  L LG ++H   +R 
Sbjct: 241 SI-----------------------------------LTVAAGMAHLLLGHQVHALVLRS 265

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                  V N+L+  YS+C  L     LF    E+  +++N +++ Y    CA     LF
Sbjct: 266 TSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLF 325

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           REM + G +   +  A++L +   + ++  GK+ H  ++   + +E  LL N+L++MY++
Sbjct: 326 REMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED-LLGNALIDMYSK 384

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  AKS F   S +  +++T+LI GY   G+   AL+LF +M +  ++PD  T  ++
Sbjct: 385 CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 444

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           + A S   ++  G +Q        G    +   + +VD+Y + G L++A     +MP   
Sbjct: 445 IKASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ER 502

Query: 580 TSAMWATLLGA 590
            S  W  ++ A
Sbjct: 503 NSISWNAVISA 513



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 189/428 (44%), Gaps = 45/428 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ I+     +  L  G Q+HA  +      N  +   L+ FY+     ++   L +  
Sbjct: 238 TFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEM 297

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + +N++I+ Y  +   A  L ++++MQ          Y ++L   G + DV  G+
Sbjct: 298 PERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGK 357

Query: 196 VVHSCIDACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+ +      S   + NAL+ MY K G +D A+  F    E+ A+SW  +I+ Y   G
Sbjct: 358 QIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNG 417

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA QLF +M+  G+  +  T+++I                                 
Sbjct: 418 QHEEALQLFSDMRRAGLRPDRATFSSI--------------------------------- 444

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + A S +  + LG+++H   +R  Y       + L+ MY++C  L  A   F    E+
Sbjct: 445 --IKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER 502

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR--VANLQHGKE 432
           + I+WN+++S Y H   A+ +  +F  M   G  P+ VT  S+L  C+   +A+ +  K 
Sbjct: 503 NSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLAD-ECMKY 561

Query: 433 FHCYILRRAM--FNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYG 489
           FH    + ++  + EH   +  +++   R G   +  K + ++  + D + +TS++    
Sbjct: 562 FHLMKHQYSISPWKEH---YACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCR 618

Query: 490 IQGEGRVA 497
           I G   +A
Sbjct: 619 IHGNQELA 626



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 164/359 (45%), Gaps = 33/359 (9%)

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +  AR +FD+M  ++  S N ++SAY+S G    A  LF+         N  TW  + 
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHR----NATTWTIMM 112

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLD--SVATVIGLGACS----HVGALKLGKEIHGSA 336
                 G     L L   M  +    D  +V TV+ L  C+    H  A+K G + H   
Sbjct: 113 RAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTH--- 169

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           V  C        N L+  Y +   L  A  +F    +K  +T+N+M+ G +      ++ 
Sbjct: 170 VFVC--------NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR-AMFNEHLLLWNSLVE 455
            LF  M R+G+   + T +SIL + A +A+L  G + H  +LR  ++ N  + + NSL++
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLN--VFVNNSLLD 279

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK----NQIKP 511
            Y++   + + + +FD M  RD V+Y  +IA Y         L+LF EM K     Q+ P
Sbjct: 280 FYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLP 339

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
            + TM++V  +       V   KQ      + G+  +      ++D+Y + G+L+ AK 
Sbjct: 340 -YATMLSVAGSLPD----VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 393



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 96/263 (36%), Gaps = 39/263 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G   +A + F+ +R      D    +F+ II     +  +  G+QLH+  I  G +
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRA--TFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 470

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +      LV  YA     + A    +    R  + WN +IS Y   G    A+ +++ M
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVD-----FGRVVHS------------CIDACHEWSL 209
                  D+ T+ SVL AC      D     F  + H              ID       
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 590

Query: 210 F--VHNALVSMYGK---------------FGQVDVARRLFDKML---ERDAVSWNTMISA 249
           F  V   LV M  K                G  ++AR   DK+      DA  +  + + 
Sbjct: 591 FSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNI 650

Query: 250 YASKGLWKEAFQLFVEMQEEGVE 272
           YA  G W++A  +   M++ GV 
Sbjct: 651 YARAGQWEDAACVKKIMRDRGVR 673


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/490 (35%), Positives = 269/490 (54%), Gaps = 18/490 (3%)

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           ++W+    NA+V+ Y K  Q D ARRLFD M  +D VSWN+M++ Y   G  +   Q F 
Sbjct: 23  YKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFE 82

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           EM E     +V++WN +  G +  G+     E   ++    T    V+ V  L   +  G
Sbjct: 83  EMAER----DVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNT----VSWVTMLCGFARFG 134

Query: 325 ALKLGKEIHGS-AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
            +   + +     +R          NA+I  Y +   +  A  LF    EK+ I+W +++
Sbjct: 135 KIAEARRLFDQMPIRNVVA-----WNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVI 189

Query: 384 SGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +GY  +   +E+  L  +M +R+  +P+  T A  L  CA +A LQ GK+ H  +++   
Sbjct: 190 NGYVRMGKLDEARQLLNQMPYRN--KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSG- 246

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           +   L + N+L+ MYA+ G +  A+ +F  +   D V++ SLIA Y + G GR ALKLF 
Sbjct: 247 YATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFH 306

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M    + PD VT V +LSACSH GL+ +G K F+ M   Y I P  EH+ACMVDL GRA
Sbjct: 307 KMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRA 366

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G L +A +++  M     + +W  LLGAC+IH N  + ++AAEKLLE  P  +  YVL++
Sbjct: 367 GRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLS 426

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           NM A  G WD++A+VR  M++ G  K PG +W++  N    FL +D ++ +A E+  +L 
Sbjct: 427 NMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELCHILR 486

Query: 683 GLTELMKDAG 692
            LT  M++ G
Sbjct: 487 SLTAHMRNTG 496



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 193/401 (48%), Gaps = 43/401 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I C  +   LA+ + L      L  + NPV    +V  YA    ++ A  L +    + 
Sbjct: 1   MITCYTRNGELAKARNLFNL---LPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKD 57

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD--VDFGRVV 197
            + WN +++ Y R+G     L  +++M  R +   N            M+D  V+ G   
Sbjct: 58  LVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNL-----------MVDGFVEVG--- 103

Query: 198 HSCIDACHEWSLF--VHN----ALVSM---YGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
               D    W  F  + N    + V+M   + +FG++  ARRLFD+M  R+ V+WN MI+
Sbjct: 104 ----DLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIA 159

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
           AY       EA  LF+EM E+    N I+W T+  G +R G      +LL++M  +    
Sbjct: 160 AYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQMPYRNKP- 214

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
           D      GL +C+H+ AL++GK++H   ++  Y     V NALITMY++C  +  A +LF
Sbjct: 215 DQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLF 274

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
           K      +++WNS+++ Y       E+  LF +M   GV P+ VT   IL  C+ V  + 
Sbjct: 275 KDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLID 334

Query: 429 HG-KEFHCYILRRAM--FNEHLLLWNSLVEMYARSGKVPEA 466
            G K F C +    +    EH   +  +V++  R+G++ EA
Sbjct: 335 QGLKLFKCMVQAYNIEPLAEH---YACMVDLLGRAGRLEEA 372



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 100/257 (38%), Gaps = 49/257 (19%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
            +FA  +  C  + AL  GKQLH   +  G   +  +   L+T YA     ++A  L ++
Sbjct: 217 STFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKD 276

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
            +    + WN LI+ Y  +G   EAL ++ +M+   +  D  T+  +L AC  +  +D G
Sbjct: 277 IDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQG 336

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
             +  C              +V  Y                +E  A  +  M+      G
Sbjct: 337 LKLFKC--------------MVQAYN---------------IEPLAEHYACMVDLLGRAG 367

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF-------KGVLE----------L 297
             +EAFQL   M+   +  N   W  + G C   GN        + +LE          L
Sbjct: 368 RLEEAFQLVRGMK---INANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVL 424

Query: 298 LSRMRTQETYLDSVATV 314
           LS M+ +    D VA V
Sbjct: 425 LSNMQAEAGRWDEVARV 441



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 15/161 (9%)

Query: 453 LVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           ++  Y R+G++ +A+++F+L+  + + V   +++AGY    +   A +LF+ M       
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK---- 56

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D V+  ++L+  + +G +  G + FE M         +  +  MVD +   G LN + E 
Sbjct: 57  DLVSWNSMLTGYTRNGEMRLGLQFFEEMAE-----RDVVSWNLMVDGFVEVGDLNSSWEF 111

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
             K+P  P +  W T+L  C   R   I E  A +L +  P
Sbjct: 112 FEKIP-NPNTVSWVTML--CGFARFGKIAE--ARRLFDQMP 147


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/533 (32%), Positives = 281/533 (52%), Gaps = 51/533 (9%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQ----------- 224
           + P  LK+C  +     G  +H+  + +      F  NAL+++Y K              
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 225 ---VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
              ++  R++FD+M E+D VSWNT++   A  G   EA  L  EM  +G + +  T    
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFT---- 175

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                                     L SV  +   GA      ++ G E+HG A R  +
Sbjct: 176 --------------------------LSSVLPIFAEGA-----DVRRGMELHGFATRNGF 204

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
            +   V ++LI MY+ C    ++  +F     +  I WNSML+G       +E+  LFR 
Sbjct: 205 HDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRR 264

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M  SG++P  VT +S++P C  +A+L  GK+ H Y++R   F+ ++ + +SL++MY + G
Sbjct: 265 MLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGG-FDGNVFISSSLIDMYCKCG 323

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            V  A+ +FD +   D V++T++I G+ + G  R AL LF+ M    +KP+H+T +AVL+
Sbjct: 324 NVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLT 383

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSH+GLV +G K F  M+  YGI P LEH A + D  GR G L +A   I+ M   PT+
Sbjct: 384 ACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTA 443

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           ++W+TLL AC++H+NT + E  A+K+ +  P + G +++++N Y+++G W++ A +R  M
Sbjct: 444 SVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSM 503

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           R  G++K P C+W++  N    F+  D S+   + I   L   +E M   GYV
Sbjct: 504 RKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYV 556



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 152/324 (46%), Gaps = 21/324 (6%)

Query: 289 GNFKGVLELLSRMRTQE--TYLDSVATVI--GLGACSHVGALKLGKEIHGSAVRGCYGEY 344
           G+F   + L  RMR  +      SV T +   L +C+ +G   LG  +H  A+R      
Sbjct: 33  GDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGAFAD 92

Query: 345 ENVRNALITMYSRCKD--------------LRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
               NAL+ +Y +                 L     +F    EK +++WN+++ G     
Sbjct: 93  RFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESG 152

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
              E+  L REM+R G +P+  T++S+LP+ A  A+++ G E H +  R   F++ + + 
Sbjct: 153 RHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNG-FHDDVFVG 211

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           +SL++MYA   +   +  VFD +  RD + + S++AG    G    AL LF  M  + IK
Sbjct: 212 SSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIK 271

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
           P  VT  +++ AC +   ++ G KQ        G    +   + ++D+Y + G ++ A+ 
Sbjct: 272 PMPVTFSSLIPACGNLASLLLG-KQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARR 330

Query: 571 IITKMPYTPTSAMWATLLGACQIH 594
           I  ++  +P    W  ++    +H
Sbjct: 331 IFDRI-QSPDIVSWTAMIMGHALH 353



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 105/199 (52%), Gaps = 1/199 (0%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
           +G +LH  A   G   +  +   L+  YA+ +  + +  + +N  +R  + WN +++   
Sbjct: 191 RGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCA 250

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLF 210
           ++G   EAL ++++M    I+    T+ S++ ACG +  +  G+ +H+  I    + ++F
Sbjct: 251 QNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVF 310

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + ++L+ MY K G V +ARR+FD++   D VSW  MI  +A  G  +EA  LF  M+   
Sbjct: 311 ISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGN 370

Query: 271 VEVNVITWNTIAGGCLRTG 289
           ++ N IT+  +   C   G
Sbjct: 371 LKPNHITFLAVLTACSHAG 389



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 119/266 (44%), Gaps = 18/266 (6%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           A  G++ +A   F R+  +      V  +F+ +I  CG + +L  GKQLHA  I  G + 
Sbjct: 250 AQNGSVDEALGLFRRMLHSGIKPMPV--TFSSLIPACGNLASLLLGKQLHAYVIRGGFDG 307

Query: 108 NPVLVPKLVTFY---ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           N  +   L+  Y    + S+       +++ +I   + W  +I  +   G   EAL ++ 
Sbjct: 308 NVFISSSLIDMYCKCGNVSIARRIFDRIQSPDI---VSWTAMIMGHALHGPAREALVLFD 364

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKF 222
           +M+   ++ ++ T+ +VL AC     VD G    + +   +    SL  H AL    G+ 
Sbjct: 365 RMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRP 424

Query: 223 GQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITW 278
           G+++ A      M ++  A  W+T++ A   + +  L +E  +   +++   +  ++I  
Sbjct: 425 GKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILS 484

Query: 279 NTIAGGCLRTGNFKGVLELLSRMRTQ 304
           NT +     +G +     L   MR +
Sbjct: 485 NTYSS----SGRWNEAAHLRKSMRKK 506


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 294/568 (51%), Gaps = 58/568 (10%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + W LLI+ Y + G+  EA+ ++  M     + D +T  S+L AC E+     G+ +
Sbjct: 218 RTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQL 277

Query: 198 HSCI-------DACHEWSLFVHNALVSMYGKF--GQ-VDVARRLFDKMLERDAVSWNTMI 247
           HS         D+C      V   LV MY K   GQ +  AR +F++M + + ++W  ++
Sbjct: 278 HSLALRLGLESDSC------VSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALL 331

Query: 248 SAYASKGLW-KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           S Y  +G    +   LF +M  EG+  N IT++++                         
Sbjct: 332 SGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSM------------------------- 366

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                     L AC+++G    G++IH   V+    +   V NAL++MY+    +  A  
Sbjct: 367 ----------LKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARH 416

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
            F    EK++++++  L G         + +   ++ R  +  +  T  S++   A V  
Sbjct: 417 AFDQLYEKNMVSFSGNLDGD-----GRSNTYQDYQIERMELGISTFTFGSLISAAASVGM 471

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
           L  G+  H   L+ A F     + NSLV MY+R G + +A  VFD M+  + +++TS+I+
Sbjct: 472 LTKGQRLHALSLK-AGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMIS 530

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           G    G    AL+LF +M    +KP+ VT +AVLSACSH+GLV EG++ F  M   +G+ 
Sbjct: 531 GLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLI 590

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606
           P++EH+ACMVDL GR+GL+  A + I +MP    + +W TLLGAC+ H N  IGE AA  
Sbjct: 591 PRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANH 650

Query: 607 LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLV 666
           +++  P++   YVL++N+YA  G WD++A++R+ MRD  + K  G +W+   N    F  
Sbjct: 651 VIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRA 710

Query: 667 DDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            DTS+ QA+EIY  L  L   +K  GYV
Sbjct: 711 GDTSHPQAEEIYTKLETLIREIKVMGYV 738



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 223/496 (44%), Gaps = 53/496 (10%)

Query: 90  LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS--NIRYPLPWNLLI 147
           L +  Q H       LE + V+   L+T Y+  S    A  + +     +R  + W  + 
Sbjct: 65  LGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMA 124

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC--GEMMDVDFGRVVHSCIDACH 205
           S   R+G  AEAL ++ +     +  + FT  +  +AC   E+  +  G V+   +    
Sbjct: 125 SCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVL-GLVFKLG 183

Query: 206 EW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
            W   + V  AL+ M+ K G +   RR+FD + ER  V W  +I+ YA  G   EA +LF
Sbjct: 184 FWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELF 243

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           ++M E G + +  T +++   C   G+F                                
Sbjct: 244 LDMLENGFQPDQYTLSSMLSACTELGSF-------------------------------- 271

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC---KDLRHAYILFKMTAEKSIITWN 380
              +LG+++H  A+R        V   L+ MY++    + L +A  +F    + +++ W 
Sbjct: 272 ---RLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWT 328

Query: 381 SMLSGYTHLDCAEESA-FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           ++LSGY      +     LF +M   G+ PN++T +S+L  CA + +   G++ H + ++
Sbjct: 329 ALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVK 388

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             + + + ++ N+LV MYA SG + EA+  FD +  ++ V+++       + G+GR    
Sbjct: 389 SNLADLN-VVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSG-----NLDGDGRSNTY 442

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
              ++ + ++     T  +++SA +  G++ +GQ+    ++   G          +V +Y
Sbjct: 443 QDYQIERMELGISTFTFGSLISAAASVGMLTKGQR-LHALSLKAGFGSDRAIGNSLVSMY 501

Query: 560 GRAGLLNKAKEIITKM 575
            R G L  A ++  +M
Sbjct: 502 SRCGYLVDACQVFDEM 517



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 209/450 (46%), Gaps = 66/450 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYA---SFSLYNNACFLV 132
           + + ++  C ++ +   G+QLH+ A+ LGLE +  +   LV  YA   +    +NA  + 
Sbjct: 257 TLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVF 316

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYA-EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
                   + W  L+S YV+ G    + + ++ +M +  IR ++ TY S+LKAC  + D 
Sbjct: 317 NRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQ 376

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           D GR +H+ C+ +       V NALVSMY + G ++ AR  FD++ E++ VS++  +   
Sbjct: 377 DSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGD 436

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                +++ +Q  +E  E G+       +T   G L                        
Sbjct: 437 GRSNTYQD-YQ--IERMELGI-------STFTFGSL------------------------ 462

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                 + A + VG L  G+ +H  +++  +G    + N+L++MYSRC  L  A  +F  
Sbjct: 463 ------ISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDE 516

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             + ++I+W SM+SG      A  +  LF +M  +GV+PN VT  ++L  C+    ++ G
Sbjct: 517 MNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEG 576

Query: 431 KEFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSL 484
           KE       R M   H L+     +  +V++  RSG V +A    + M  + D + + +L
Sbjct: 577 KEHF-----RMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTL 631

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +           A K    M+  +I  +HV
Sbjct: 632 LG----------ACKTHNNMDIGEIAANHV 651


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 184/599 (30%), Positives = 304/599 (50%), Gaps = 37/599 (6%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LH  AI  GL+ +  +   L+  Y    L   A  +    + +  + +N ++    ++G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNA 214
           + +AL ++  M+   I   +FT+ S+L     M  +  G  VH+ +  +    ++FV+N+
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+  Y K   +D  RRLFD+M ERD VS+N +I+AYA         +LF EMQ+ G +  
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
           V+ + T+                                   L     +  + +GK+IH 
Sbjct: 337 VLPYATM-----------------------------------LSVAGSLPDVHIGKQIHA 361

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             V       + + NALI MYS+C  L  A   F   +EKS I+W ++++GY      EE
Sbjct: 362 QLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEE 421

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  LF +M R+G+ P+  T +SI+   + +A +  G++ H Y++R   +   +   + LV
Sbjct: 422 ALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG-YKSSVFSGSVLV 480

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MYA+ G + EA   FD M  R+ +++ ++I+ Y   GE + A+K+FE M      PD V
Sbjct: 481 DMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSV 540

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           T ++VL+ACSH+GL  E  K F  M   Y I P  EH+AC++D  GR G  ++ ++++ +
Sbjct: 541 TFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVE 600

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           MP+     +W ++L +C+IH N  +   AA+KL    P ++  YV+++N+YA  G W+  
Sbjct: 601 MPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDA 660

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           A V+  MRD GVRK  G +WV+       F  +D ++    EI   L  L + M   GY
Sbjct: 661 ACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGY 719



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 220/491 (44%), Gaps = 54/491 (10%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
            KN   +  +++ Y+S      A  L  +S  R    W +++  +   G  ++AL +++ 
Sbjct: 71  HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRA 130

Query: 166 MQSRRIRGDNFTYPSVLKACG------EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMY 219
           M    +  D  T  +VL   G          + FG   H          +FV N L+  Y
Sbjct: 131 MLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTH----------VFVCNTLLDAY 180

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G +  ARR+F +M ++DAV++N M+   + +GL  +A QLF  M+  G+     T++
Sbjct: 181 CKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFS 240

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
           +I                                   L   + +  L LG ++H   +R 
Sbjct: 241 SI-----------------------------------LTVAAGMAHLLLGHQVHALVLRS 265

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
                  V N+L+  YS+C  L     LF    E+  +++N +++ Y    CA     LF
Sbjct: 266 TSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLF 325

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           REM + G +   +  A++L +   + ++  GK+ H  ++   + +E  LL N+L++MY++
Sbjct: 326 REMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED-LLGNALIDMYSK 384

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  AKS F   S +  +++T+LI GY   G+   AL+LF +M +  ++PD  T  ++
Sbjct: 385 CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 444

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           + A S   ++  G +Q        G    +   + +VD+Y + G L++A     +MP   
Sbjct: 445 IKASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER- 502

Query: 580 TSAMWATLLGA 590
            S  W  ++ A
Sbjct: 503 NSISWNAVISA 513



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 200/456 (43%), Gaps = 55/456 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ I+     +  L  G Q+HA  +      N  +   L+ FY+     ++   L +  
Sbjct: 238 TFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEM 297

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + +N++I+ Y  +   A  L ++++MQ          Y ++L   G + DV  G+
Sbjct: 298 PERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGK 357

Query: 196 VVHSCIDACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+ +      S   + NAL+ MY K G +D A+  F    E+ A+SW  +I+ Y   G
Sbjct: 358 QIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNG 417

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA QLF +M+  G+  +  T+++I                                 
Sbjct: 418 QHEEALQLFSDMRRAGLRPDRATFSSI--------------------------------- 444

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + A S +  + LG+++H   +R  Y       + L+ MY++C  L  A   F    E+
Sbjct: 445 --IKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER 502

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR--VANLQHGKE 432
           + I+WN+++S Y H   A+ +  +F  M   G  P+ VT  S+L  C+   +A+ +  K 
Sbjct: 503 NSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLAD-ECMKY 561

Query: 433 FHCYILRRAM--FNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYG 489
           FH    + ++  + EH   +  +++   R G   +  K + ++  + D + +TS++    
Sbjct: 562 FHLMKHQYSISPWKEH---YACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCR 618

Query: 490 IQGE---GRVAL-KLFEEMNKNQIKPDHVTMVAVLS 521
           I G     RVA  KLF       ++P   T   +LS
Sbjct: 619 IHGNQELARVAADKLF------GMEPTDATPYVILS 648



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 164/358 (45%), Gaps = 33/358 (9%)

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
           G +  AR +FD+M  ++  S N ++SAY+S G    A  LF+         N  TW  + 
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHR----NATTWTIMM 112

Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLD--SVATVIGLGACS----HVGALKLGKEIHGSA 336
                 G     L L   M  +    D  +V TV+ L  C+    H  A+K G + H   
Sbjct: 113 RAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTH--- 169

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           V  C        N L+  Y +   L  A  +F    +K  +T+N+M+ G +      ++ 
Sbjct: 170 VFVC--------NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR-AMFNEHLLLWNSLVE 455
            LF  M R+G+   + T +SIL + A +A+L  G + H  +LR  ++ N  + + NSL++
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLN--VFVNNSLLD 279

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK----NQIKP 511
            Y++   + + + +FD M  RD V+Y  +IA Y         L+LF EM K     Q+ P
Sbjct: 280 FYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLP 339

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
            + TM++V  +       V   KQ      + G+  +      ++D+Y + G+L+ AK
Sbjct: 340 -YATMLSVAGSLPD----VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAK 392



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 96/263 (36%), Gaps = 39/263 (14%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   G   +A + F+ +R      D    +F+ II     +  +  G+QLH+  I  G +
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRA--TFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 470

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +      LV  YA     + A    +    R  + WN +IS Y   G    A+ +++ M
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVD-----FGRVVHS------------CIDACHEWSL 209
                  D+ T+ SVL AC      D     F  + H              ID       
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 590

Query: 210 F--VHNALVSMYGK---------------FGQVDVARRLFDK---MLERDAVSWNTMISA 249
           F  V   LV M  K                G  ++AR   DK   M   DA  +  + + 
Sbjct: 591 FSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNI 650

Query: 250 YASKGLWKEAFQLFVEMQEEGVE 272
           YA  G W++A  +   M++ GV 
Sbjct: 651 YARAGQWEDAACVKKIMRDRGVR 673


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 183/608 (30%), Positives = 311/608 (51%), Gaps = 45/608 (7%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C +   L +GK +HA A+  GL +   +   LV+ YA       A  + + +  R  + W
Sbjct: 124 CSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSW 183

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC--GEMMDVDFGRVVHSCI 201
           N L+S Y+R G + E L V+  M+   +  ++F   SV+K C  G+         VH C+
Sbjct: 184 NSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCV 243

Query: 202 -DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS------AYASKG 254
             A  +  LF+ +A+V MY K G +  A  LF  +L+ + V +N MI+      A   K 
Sbjct: 244 VKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKE 303

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           + +EA  L+ E+Q  G+E    T++++                                 
Sbjct: 304 VVREALSLYSELQSRGMEPTEFTFSSV--------------------------------- 330

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + AC+  G ++ GK+IHG  ++ C+   + + +ALI +Y     +   +  F+   ++
Sbjct: 331 --IRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQ 388

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            ++TW +M+SG    +  E +  LF E+   G++P+  TI+S++  CA +A ++ G++  
Sbjct: 389 DVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQ 448

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
           C+  +   F+    + NS + MYARSG V  A   F  M   D V+++++I+ +   G  
Sbjct: 449 CFATKSG-FDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCA 507

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           R AL+ F EM   ++ P+ +T + VL+ACSH GLV EG + +E M   YG+ P ++H  C
Sbjct: 508 RQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTC 567

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           +VDL GRAG L  A+  I    +     +W +LLG+C+IHR+   G+  A++++E +P +
Sbjct: 568 VVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIMELQPAS 627

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           SG YV + NMY   G     +K+R  M++ GV+K PG +W++  +    F+  D S+ + 
Sbjct: 628 SGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHPEC 687

Query: 675 QEIYPLLG 682
             IY  L 
Sbjct: 688 NAIYTKLA 695



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 216/460 (46%), Gaps = 57/460 (12%)

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVY-KQMQSRRIRGDNFTYPSVLKACGEMM 189
           L++    R  + +NLLI  Y R G   E+L  +    ++  ++ D FTY + L AC    
Sbjct: 69  LLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAG 128

Query: 190 DVDFGRVVHS--CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
            +  G+VVH+   ++   E  +FV N+LVSMY + G +  ARR+FD   ERD VSWN+++
Sbjct: 129 RLKEGKVVHALAVLEGLAE-GVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLV 187

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL-RTGNFKGVLELLSRMRTQET 306
           S Y   G  +E  ++F  M+   + +N     ++   C    G+ +G+ E          
Sbjct: 188 SGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAE---------- 237

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
                                    +HG  V+        + +A++ MY++   L  A  
Sbjct: 238 ------------------------AVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVA 273

Query: 367 LFKMTAEKSIITWNSMLSGY------THLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           LFK   + +++ +N+M++G        H +   E+  L+ E+   G+EP   T +S++  
Sbjct: 274 LFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRA 333

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           C    +++ GK+ H  +L+   F     + ++L+++Y  S  + +    F  + ++D VT
Sbjct: 334 CNLAGDIEFGKQIHGQVLKHC-FQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVT 392

Query: 481 YTSLIAGYGIQGE-GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
           +T++I+G  +Q E    AL LF E+    +KPD  T+ +V++AC+   +V  G++     
Sbjct: 393 WTAMISGC-VQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQM---- 447

Query: 540 TSIYGIFPQLEHFACM----VDLYGRAGLLNKAKEIITKM 575
              +      + F  M    + +Y R+G +  A +   +M
Sbjct: 448 -QCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEM 486



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 179/401 (44%), Gaps = 61/401 (15%)

Query: 208 SLFVHNALVSMYGKFGQVDV--ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVE 265
           SLF+ N L++ Y + G  D   ARRL D+M  R+AVS+N +I AY+  G  +E+ + F+ 
Sbjct: 44  SLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLH 103

Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325
                                               R  E   D       L ACS  G 
Sbjct: 104 AH----------------------------------RAAEVKADRFTYAAALAACSRAGR 129

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           LK GK +H  AV     E   V N+L++MY+RC D+  A  +F +T E+  ++WNS++SG
Sbjct: 130 LKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSG 189

Query: 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA-------RVANLQHGKEFHCYIL 438
           Y  +   EE   +F  M R  +  N   + S++  C+        +A   HG    C + 
Sbjct: 190 YLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHG----CVV- 244

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY-----GIQGE 493
            +A  +  L L +++V+MYA+ G + EA ++F  +   + V + ++IAG       +  E
Sbjct: 245 -KAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKE 303

Query: 494 -GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
             R AL L+ E+    ++P   T  +V+ AC+ +G  +E  KQ       +    Q + F
Sbjct: 304 VVREALSLYSELQSRGMEPTEFTFSSVIRACNLAG-DIEFGKQIHGQVLKHCF--QGDDF 360

Query: 553 --ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
             + ++DLY  +  +         +P       W  ++  C
Sbjct: 361 IGSALIDLYFNSACMEDGFRCFRSVPKQDV-VTWTAMISGC 400



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/454 (21%), Positives = 200/454 (44%), Gaps = 59/454 (12%)

Query: 74  LDSFA--HIIFCC----GKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127
           L+SFA   +I CC    G V+ +A+   +H C +  GL+ +  L   +V  YA     + 
Sbjct: 213 LNSFALGSVIKCCSGGDGSVRGIAEA--VHGCVVKAGLDTDLFLASAMVDMYAKRGALSE 270

Query: 128 ACFLVENSNIRYPLPWNLLISLYVRDG------FYAEALCVYKQMQSRRIRGDNFTYPSV 181
           A  L ++      + +N +I+   RD          EAL +Y ++QSR +    FT+ SV
Sbjct: 271 AVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSV 330

Query: 182 LKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDA 240
           ++AC    D++FG+ +H   +  C +   F+ +AL+ +Y     ++   R F  + ++D 
Sbjct: 331 IRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDV 390

Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
           V+W  MIS      L++ A  LF E+   G++ +  T +++                   
Sbjct: 391 VTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSV------------------- 431

Query: 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
                           + AC+ +  ++ G+++   A +  +  +  + N+ I MY+R  +
Sbjct: 432 ----------------MNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSGN 475

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           +  A   F+      +++W++++S +    CA ++   F EM  + V PN +T   +L  
Sbjct: 476 VEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTA 535

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           C+    +  G  ++  +         +     +V++  R+G++ +A++       RD + 
Sbjct: 536 CSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFI-----RDSIF 590

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +   +    + G  R+      +M + Q+  D +
Sbjct: 591 HDEPVVWQSLLGSCRI----HRDMERGQLVADRI 620


>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/539 (32%), Positives = 302/539 (56%), Gaps = 19/539 (3%)

Query: 175 NFTYPS-VLKACGEMMDVDFGRVVHSCIDACHEWS-----LFVHNALVSMYGKFGQVDVA 228
           N   PS +L  CG   ++  G  +H+ I    E S     + + N+L+SMY + G++  A
Sbjct: 44  NHLDPSFLLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDA 103

Query: 229 RRLFDKMLERDAVSWNTMI-------SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            ++FD+M+ RD +SWN +I       ++Y   G      Q+F EM E     NVITW  +
Sbjct: 104 VKVFDEMITRDTISWNALIGGFVRNGNSYFKCGCVGLGMQVFYEMGER----NVITWTAV 159

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSHVGALKLGKEIHGSAVRGC 340
             G  + G  +  L+L   M +  +   +  T + L  ACS + ALK G +IHG  ++  
Sbjct: 160 ISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLG 219

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
                 + +AL+ MYS+   +  A+ +F++  E  +++   +L+G+TH  C EE+  +F 
Sbjct: 220 IQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFL 279

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
           +M + G+E +   ++ +L +     +L+ G++ H +++++  F  +  + N L+ MY++ 
Sbjct: 280 KMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKKN-FICNPFVSNGLINMYSKC 338

Query: 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
           G + E+  VFD M  R+ VT+ S+IA +   G+   AL+L+E+M     KP  VT +++L
Sbjct: 339 GALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLL 398

Query: 521 SACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
            ACSH+GLV +G +  + MT  +G+ P+ EH AC+VD+ GRAG+L++A+  I K+P  P 
Sbjct: 399 HACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPG 458

Query: 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640
             +W  LLGAC ++ ++ IG++AAE L    P++   YVL+AN+Y++ G W + A+    
Sbjct: 459 LLVWQALLGACSLYGDSKIGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRK 518

Query: 641 MRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           M+++G  K  G +W++       F V D  + Q + IY +L  L  LM D GYV  ++F
Sbjct: 519 MKEVGTAKETGISWIEIDKKVHSFTVGDKMHPQTEMIYGVLWELFILMVDEGYVPDKKF 577



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 200/469 (42%), Gaps = 84/469 (17%)

Query: 84  CGKVKALAQGKQLHACAIA---LGLEKNPVLV-PKLVTFYASFSLYNNACFLVENSNIRY 139
           CG+   L  G  LHA  I    L    N V++   L++ Y       +A  + +    R 
Sbjct: 55  CGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMITRD 114

Query: 140 PLPWNLLISLYVR--------------------------------------DGFYAEALC 161
            + WN LI  +VR                                      +G++  +L 
Sbjct: 115 TISWNALIGGFVRNGNSYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLK 174

Query: 162 VYKQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMY 219
           ++K+M S   +  ++ TY S+L AC  +  +  G  +H  I     +  L + +AL+ MY
Sbjct: 175 LFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMY 234

Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
            K G++  A ++F+   E D VS   +++ +   G  +EA Q+F++M + G+E++     
Sbjct: 235 SKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEID----- 289

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
                    GN                    V +V+ LG      +L+LG+++H   V+ 
Sbjct: 290 ---------GN--------------------VVSVV-LGVFGADTSLRLGQQVHSFVVKK 319

Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            +     V N LI MYS+C  L  +  +F    E++ +TWNSM++ +     A ++  L+
Sbjct: 320 NFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLY 379

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M   G +P  VT  S+L  C+    ++ G EF   + +    N        +V+M  R
Sbjct: 380 EDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACVVDMLGR 439

Query: 460 SGKVPEAKSVFDLMSRRDE-VTYTSLIAGYGIQGEGRV----ALKLFEE 503
           +G + EA++  + +  +   + + +L+    + G+ ++    A  LF E
Sbjct: 440 AGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIGKYAAEHLFSE 488



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 115/227 (50%), Gaps = 1/227 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  ++AL +G Q+H   + LG++ +  +   L+  Y+       A  + E +
Sbjct: 191 TYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELA 250

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
                +   ++++ +  +G   EA+ ++ +M    I  D      VL   G    +  G+
Sbjct: 251 EELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQ 310

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VHS  +      + FV N L++MY K G +D + ++FD+M ER++V+WN+MI+A+A  G
Sbjct: 311 QVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHG 370

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
              +A QL+ +MQ EG +   +T+ ++   C   G  K  +E L  M
Sbjct: 371 DALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSM 417



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 114/303 (37%), Gaps = 50/303 (16%)

Query: 22  IPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTR-----IRITAASHDVVLDS 76
           I + WK     E +  ++L   L  F   G   +A + F +     I I      VVL  
Sbjct: 240 IGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGV 299

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           F       G   +L  G+Q+H+  +      NP +   L+  Y+     + +  + +   
Sbjct: 300 F-------GADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMR 352

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R  + WN +I+ + R G   +AL +Y+ MQ    +  + T+ S+L AC     V  G  
Sbjct: 353 ERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGME 412

Query: 197 VHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKMLERDA-VSWNTMISA---- 249
               +   H  +     H  +V M G+ G +  AR   +K+ E+   + W  ++ A    
Sbjct: 413 FLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLY 472

Query: 250 ------------------------------YASKGLWKEAFQLFVEMQEEGVEVNV-ITW 278
                                         Y+S+G WKE  +   +M+E G      I+W
Sbjct: 473 GDSKIGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISW 532

Query: 279 NTI 281
             I
Sbjct: 533 IEI 535


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 303/601 (50%), Gaps = 51/601 (8%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN-ACFLVENSNIRY-PLPWNL 145
           K L   +Q+HA  +  GL  +  +  K++ F+A+F  Y + AC  +E  N R    P+N 
Sbjct: 16  KNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNS 75

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID--- 202
           LI+ YV   F   A+ VY++M       D FT+P +LKAC        GR VH  +    
Sbjct: 76  LINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLG 135

Query: 203 --ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
             A H    +V N+L+  YG  G    A ++FD+ML RD                     
Sbjct: 136 LLADH----YVQNSLIRCYGACGDFSCAGKVFDEMLVRD--------------------- 170

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
                         V++WN++  G ++ G+F   + +  RM  + +    V+    L AC
Sbjct: 171 --------------VVSWNSLISGFMKAGHFDEAISVFFRMDVEPSMTTLVSV---LAAC 213

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
           +  G L  GK IHG   R  +     + NA++ MY +      A  +F     + I++W 
Sbjct: 214 ARNGDLCTGKGIHGVIERR-FKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWT 272

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
            M++G    D  ++S  LF  M   G+ P+ + + S+L  CA +  L  G   H YI +R
Sbjct: 273 IMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQR 332

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
            +    + +  ++V+MYA+ G +  A  +F  MS+R+  T+ +L+ G  + G    AL L
Sbjct: 333 GI-KWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNL 391

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           FE M  + +KP+ +T +A+L+AC H GLV EG+K F+ M+ +Y + P+LEH+ CM+DL+ 
Sbjct: 392 FEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFC 451

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           RAGLL +A E+   MP  P   +W  LL AC    N  +     + +LE   ++SG +VL
Sbjct: 452 RAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVL 511

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           ++N+ A    W  + ++R  M+D GVRK PG + ++       F+V D S++Q +EIY +
Sbjct: 512 LSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKV 571

Query: 681 L 681
           L
Sbjct: 572 L 572



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 183/419 (43%), Gaps = 56/419 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C       +G+Q+H   + LGL  +  +   L+  Y +   ++ A  + +  
Sbjct: 107 TFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEM 166

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R  + WN LIS +++ G + EA+ V+ +M    +     T  SVL AC    D+  G+
Sbjct: 167 LVRDVVSWNSLISGFMKAGHFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGK 223

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
            +H  I+   + +L + NA++ MY K G    A+ +FD++  RD VSW  MI+       
Sbjct: 224 GIHGVIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDH 283

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
            K++ +LF  M+  G+  + I   ++                                  
Sbjct: 284 PKQSLELFSMMRTLGISPDAIILTSV---------------------------------- 309

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVR---------NALITMYSRCKDLRHAYI 366
            L AC+ +G L  G  +H         EY N R          A++ MY++C  +  A  
Sbjct: 310 -LSACASLGTLDFGTWVH---------EYINQRGIKWDIHIGTAIVDMYAKCGCIEMALK 359

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           +F   ++++  TWN++L G        E+  LF  M  SGV+PN +T  +IL  C     
Sbjct: 360 IFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGL 419

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485
           +  G+++   + +       L  +  +++++ R+G + EA  +   M  + +V    L+
Sbjct: 420 VDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLL 478


>gi|297810955|ref|XP_002873361.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319198|gb|EFH49620.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 849

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 193/658 (29%), Positives = 337/658 (51%), Gaps = 81/658 (12%)

Query: 76  SFAHIIFCC---GKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFL 131
           + A+++  C   GK  A   G+Q+H+  +    L+ +  +   LV+FY        A  L
Sbjct: 226 TIANVLPVCASMGKNIAYRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASL 285

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMD 190
                 +  + WN++I+ Y  +  + +AL ++  + Q   +  D+ T  S+L  C ++ D
Sbjct: 286 FTRMGSKDLVSWNVVIAGYASNHEWLKALQLFHNLVQKGDVSLDSVTILSILPVCAQLTD 345

Query: 191 VDFGRVVHSCIDACHEWSL---FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
           +  G+ +HS I   H + L    V NAL+S Y +FG    A   F  M  +D +SWN ++
Sbjct: 346 LTCGKEIHSYI-LRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAIL 404

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
            A+A      + FQ                                 L LL  +  +   
Sbjct: 405 DAFADS---PKQFQF--------------------------------LNLLHHLFNEAIT 429

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRG--CYGEYE-NVRNALITMYSRCKDLRHA 364
           LDSV  +  L  C++V  +   KE+HG +V+    + E E  + NAL+  Y++C ++ +A
Sbjct: 430 LDSVTILSLLKFCTNVQGIGKVKEVHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYA 489

Query: 365 YILFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFREM--------------------- 402
           + +F+ ++  ++++T+NS+LSGY +    +++  LF EM                     
Sbjct: 490 HKIFQGLSERRTLVTYNSLLSGYVNSGSHDDAQMLFSEMSTTDLTTWSLMVRIYAESCFP 549

Query: 403 ------FRS----GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
                 FR     G+ PN VTI ++LP+CA++A+L   ++ H YI+R  + +  + L  +
Sbjct: 550 NEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGRLGD--IRLKGT 607

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
           L+++YA+ G +  A SVF   +RRD V +T+++AGY + G G+ AL +F  M  + IKPD
Sbjct: 608 LLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIFSHMIDSNIKPD 667

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
           HV +  +L+AC H+GL+ +G + ++ + +++G+ P +E +AC VDL  R G L+ A   I
Sbjct: 668 HVFITTLLTACCHAGLIQDGLQIYDSIRAVHGMKPTMEQYACAVDLLARGGRLDDAYSFI 727

Query: 573 TKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632
           T+MP  P + +W TLL AC  +    +G   A  LL+   +++G +VLI+NMYAA   W+
Sbjct: 728 TQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWE 787

Query: 633 KLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
            + ++R  M+   ++K  GC+W++       F+  D S+ +   I+ L+  L   MK+
Sbjct: 788 GVMELRNLMKKKEMKKPAGCSWLEVDGKRDVFVSGDCSHPRRDSIFDLVNALYLQMKE 845



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 146/575 (25%), Positives = 249/575 (43%), Gaps = 59/575 (10%)

Query: 67  AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN 126
              H V LD    ++  C  V  L  G+ LH C   LG      +   ++  YA     +
Sbjct: 18  GTDHRVFLD----VVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMD 73

Query: 127 NACFLVENSNIRYPLPWNLLIS-LYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKA 184
           +   +    +   P+ WN++++ L V  G   E +  +K M  +   +  + T+  +L  
Sbjct: 74  DCQKMFRQMDSVDPVVWNIVLTGLSVSCG--RETMRFFKAMHFADEPKPSSVTFAILLPV 131

Query: 185 CGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV-DVARRLFDKMLERDAVS 242
           C  + D   G+ +HS  I    E    V NALVSMY KFG +   A   FD + ++D VS
Sbjct: 132 CVRLGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVS 191

Query: 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
           WN +I+ ++   +  +AF+ F  M +E  E N  T   +   C   G  K +        
Sbjct: 192 WNAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMG--KNI-------- 241

Query: 303 TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV-RGCYGEYENVRNALITMYSRCKDL 361
                                 A + G++IH   V R     +  V N+L++ Y R   +
Sbjct: 242 ----------------------AYRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRI 279

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPL 420
             A  LF     K +++WN +++GY       ++  LF  + + G V  + VTI SILP+
Sbjct: 280 EEAASLFTRMGSKDLVSWNVVIAGYASNHEWLKALQLFHNLVQKGDVSLDSVTILSILPV 339

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           CA++ +L  GKE H YILR +   E   + N+L+  YAR G    A   F LMS +D ++
Sbjct: 340 CAQLTDLTCGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIIS 399

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           + +++  +    +    L L   +    I  D VT++++L  C++    V+G  + + + 
Sbjct: 400 WNAILDAFADSPKQFQFLNLLHHLFNEAITLDSVTILSLLKFCTN----VQGIGKVKEVH 455

Query: 541 SIYGIFPQLEHFA-------CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
             Y +   L H          ++D Y + G +  A +I   +    T   + +LL     
Sbjct: 456 G-YSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSG--- 511

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628
           + N+G  + A     E    +   + L+  +YA +
Sbjct: 512 YVNSGSHDDAQMLFSEMSTTDLTTWSLMVRIYAES 546



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 14/234 (5%)

Query: 71  DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP--KLVTFYASFSLYNNA 128
           + +LD++A     CG V+        +A  I  GL +   LV    L++ Y +   +++A
Sbjct: 474 NALLDAYAK----CGNVE--------YAHKIFQGLSERRTLVTYNSLLSGYVNSGSHDDA 521

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             L    +      W+L++ +Y    F  EA+ V++++Q+R +R +  T  ++L  C ++
Sbjct: 522 QMLFSEMSTTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQL 581

Query: 189 MDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS 248
             +   R  H  I       + +   L+ +Y K G +  A  +F     RD V +  M++
Sbjct: 582 ASLHLVRQCHGYIIRGRLGDIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVA 641

Query: 249 AYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
            YA  G  KEA  +F  M +  ++ + +   T+   C   G  +  L++   +R
Sbjct: 642 GYAVHGRGKEALMIFSHMIDSNIKPDHVFITTLLTACCHAGLIQDGLQIYDSIR 695


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 182/611 (29%), Positives = 316/611 (51%), Gaps = 41/611 (6%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+ LH  ++  GL  +  +   LV  Y         C + EN   R  + W  +I   V 
Sbjct: 170 GELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVH 229

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFV 211
            G   + L  + +M   ++  D+ T+   LKA  E   + +G+ +H+  I      + +V
Sbjct: 230 AGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYV 289

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N L +MY K  + D   RLF KM   D VSW  +I  Y                     
Sbjct: 290 VNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTY--------------------- 328

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
                         ++ G+ +  L+   RMR  +   +       + AC+++   K G++
Sbjct: 329 --------------VQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQ 374

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IHG A+R    +  +V N++IT+YS+C  L+ A ++F     K II+W++++S Y     
Sbjct: 375 IHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSH 434

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
           A+E+      M R G +PN   +AS+L +C  +A L+ GK+ H Y L   + +E  ++ +
Sbjct: 435 AKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHE-TMVHS 493

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           +L+ MY+RSG + EA  +FD +   D V++T++I GY   G  + A+ LFE ++   + P
Sbjct: 494 ALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMP 553

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D+VT + +L+AC+H+GLV  G   ++ MT+ Y I P  EH+ C++DL  RAG L++A+ +
Sbjct: 554 DYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHM 613

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           +  MP+     +W+TLL AC+ H +     WAAE++L   P ++G ++ +AN+Y+A+G  
Sbjct: 614 VRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRR 673

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
           ++ A VR  M+  GV K PG +W+++ +  + F+    S+  +++I  +L  L   + DA
Sbjct: 674 EEAAHVRKLMKSKGVIKEPGWSWINSNDQLNTFVAGVQSHPLSKQITTILELLRTSIGDA 733

Query: 692 ----GYVVKEE 698
               G +V+++
Sbjct: 734 RLDFGSIVEDD 744



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 200/440 (45%), Gaps = 39/440 (8%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
           R  + W  LI+ YV      EAL ++  M     ++ D F     LKAC   M+V FG +
Sbjct: 113 RDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVALKACALGMNVYFGEL 172

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H   + +    S+FV +ALV MY K G+ +    +F+ M  R+ VSW  +I      G 
Sbjct: 173 LHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGC 232

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
             +    F EM           W +  G                         DS    +
Sbjct: 233 SLDGLSYFSEM-----------WRSKVG------------------------YDSHTFAV 257

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L A +  G L  GK IH   ++  + E   V N L TMYS+C+   +   LF   +   
Sbjct: 258 ALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPD 317

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W +++  Y  +   E +   F+ M +S V PN  T AS++  CA +A  + G++ H 
Sbjct: 318 VVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHG 377

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           + LR  + +  L + NS++ +Y++ G + EA  VFD M+R+D ++++++I+ Y      +
Sbjct: 378 HALRLGLVDA-LSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAK 436

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A      M++   KP+   + +VLS C    L+  G KQ        G+  +    + +
Sbjct: 437 EAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPG-KQVHAYALCIGLDHETMVHSAL 495

Query: 556 VDLYGRAGLLNKAKEIITKM 575
           + +Y R+G L +A +I   +
Sbjct: 496 ISMYSRSGNLQEASKIFDSI 515



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 216/484 (44%), Gaps = 72/484 (14%)

Query: 57  FEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
           F    R ++   SH     +FA  +    +   L  GK +HA  I  G  +   +V  L 
Sbjct: 240 FSEMWRSKVGYDSH-----TFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLG 294

Query: 117 TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
           T Y+     +    L    +    + W  LI  YV+ G    AL  +K+M+   +  + +
Sbjct: 295 TMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEY 354

Query: 177 TYPSVLKACGEMMDVDFGRVVH------SCIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
           T+ SV+ AC  +    +G  +H        +DA     L V N+++++Y K G +  A  
Sbjct: 355 TFASVISACANLAITKWGEQIHGHALRLGLVDA-----LSVSNSIITLYSKCGLLQEASL 409

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +FD M  +D +SW+T+IS Y      KEAF     M  EG + N                
Sbjct: 410 VFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPN---------------- 453

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG-EYEN-VR 348
                         E  L SV +V     C  +  L+ GK++H  A+  C G ++E  V 
Sbjct: 454 --------------EFALASVLSV-----CGSMALLEPGKQVHAYAL--CIGLDHETMVH 492

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           +ALI+MYSR  +L+ A  +F       I++W +M++GY     ++E+  LF  +   G+ 
Sbjct: 493 SALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLM 552

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL-----WNSLVEMYARSGKV 463
           P+YVT   IL  C     +  G  F+ Y L   M NE+ +      +  ++++  R+G++
Sbjct: 553 PDYVTFIGILTACNHAGLVDLG--FYYYKL---MTNEYQIAPSKEHYGCIIDLLCRAGRL 607

Query: 464 PEAKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD----HVTMVA 518
            EA+ +   M    D+V +++L+      G+   A+   E+M +  + P+    H+T+  
Sbjct: 608 SEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLR--LHPNSAGAHITLAN 665

Query: 519 VLSA 522
           + SA
Sbjct: 666 IYSA 669



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 176/420 (41%), Gaps = 42/420 (10%)

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
           N+ YP     C +M  +  G+       A +  ++   N+ +    K G++  AR +F+K
Sbjct: 52  NYVYPGTATECRDM--IWQGKPEQRAPTAYYVPNMPELNSQLKQLMKLGKICEARDMFNK 109

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           M  RD +SW                                   N IAG  +   N    
Sbjct: 110 MSHRDEISWT----------------------------------NLIAG-YVNAANSNEA 134

Query: 295 LELLSRMRTQETYL-DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
           L L S M        D     + L AC+    +  G+ +HG +V+        V +AL+ 
Sbjct: 135 LILFSNMWVDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVD 194

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MY +         +F+    +++++W +++ G  H  C+ +    F EM+RS V  +  T
Sbjct: 195 MYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHT 254

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
            A  L   A    L +GK  H   +++  FNE   + N+L  MY++  K      +F  M
Sbjct: 255 FAVALKASAESGLLHYGKAIHAQTIKQG-FNETAYVVNTLGTMYSKCRKPDYVMRLFGKM 313

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
           S  D V++T+LI  Y   G+   AL  F+ M K+ + P+  T  +V+SAC++  +   G+
Sbjct: 314 STPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGE 373

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA-CQ 592
            Q        G+   L     ++ LY + GLL +A  +   M      + W+T++   CQ
Sbjct: 374 -QIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIIS-WSTIISVYCQ 431



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 11/250 (4%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G+  +A +AF R+R +  S +    +FA +I  C  +     G+Q+H  A+ LGL     
Sbjct: 332 GDEERALDAFKRMRKSDVSPNEY--TFASVISACANLAITKWGEQIHGHALRLGLVDALS 389

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +   ++T Y+   L   A  + +    +  + W+ +IS+Y +     EA      M    
Sbjct: 390 VSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREG 449

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS---CIDACHEWSLFVHNALVSMYGKFGQVDV 227
            + + F   SVL  CG M  ++ G+ VH+   CI   HE    VH+AL+SMY + G +  
Sbjct: 450 PKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHE--TMVHSALISMYSRSGNLQE 507

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A ++FD +   D VSW  MI+ YA  G  +EA  LF  +   G+  + +T+  I   C  
Sbjct: 508 ASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTAC-- 565

Query: 288 TGNFKGVLEL 297
             N  G+++L
Sbjct: 566 --NHAGLVDL 573


>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 184/587 (31%), Positives = 300/587 (51%), Gaps = 39/587 (6%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP 140
           I C  K KA  QG  +H   I  G   +  L  KL+ FY        A  + +    R  
Sbjct: 159 ILCIDK-KAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSV 217

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + W  ++S Y ++G + +A  ++  M+   ++ + FTY S L+AC  +  +D G  V  C
Sbjct: 218 VSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGC 277

Query: 201 IDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
           I       +LFV +ALV  + K G+++ A  LF  M+ERD VSWN MI  YA +G   ++
Sbjct: 278 IQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDS 337

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
           F +F  M   G+  +  T  ++                                   L A
Sbjct: 338 FCMFRSMLRGGLVPDCYTLGSV-----------------------------------LRA 362

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
            +  G L +  +IHG   +  YG Y+ V   LI  Y++   LR A  L K   +K + + 
Sbjct: 363 SAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSS 422

Query: 380 NSMLSGYTHLDCAEESAF-LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
            ++++GY H       A  LF+EM +  +  + V + S+L +CA +A+   G + H + L
Sbjct: 423 TALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFAL 482

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +    +  + + N+L++MYA+SG++ +AK  FD M  ++ +++TSLI+GY   G G +A+
Sbjct: 483 KYQP-SYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAV 541

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            L+++M     KP+ VT +++L ACSH+GL  EG + F  M + Y I P+ EH++CMVDL
Sbjct: 542 SLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDL 601

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
           + R GLL +A  ++ K+     +++W  +LGA  I+    +G+ AA  L   +PENS  Y
Sbjct: 602 FARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNY 661

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL 665
           V++A++Y+A G WD   K+R  M +   +K  G ++  A     P L
Sbjct: 662 VVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKKSIPLL 708



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 202/483 (41%), Gaps = 46/483 (9%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           ++  G   KAF  F+ +R      +    ++   +  C  ++ L  G Q+  C       
Sbjct: 227 YSQNGRFEKAFVLFSDMRHCGVKANQF--TYGSALRACTSLRCLDMGIQVQGCIQKGRFV 284

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           +N  +   LV F++      +A +L      R  + WN +I  Y   GF  ++ C+++ M
Sbjct: 285 ENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSM 344

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSL-FVHNALVSMYGKFGQV 225
               +  D +T  SVL+A  E   +     +H  I      S   V   L++ Y K G +
Sbjct: 345 LRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSL 404

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWK-EAFQLFVEMQEEGVEVNVITWNTIAGG 284
             A+ L   ML++D  S   +I+ YA +G++  +A  LF EM +  +             
Sbjct: 405 RSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIG------------ 452

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                  +D V     L  C+++ +  LG +IH  A++      
Sbjct: 453 -----------------------MDDVILCSMLNICANLASFALGTQIHAFALKYQPSYD 489

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
             + NALI MY++  ++  A   F    EK++I+W S++SGY        +  L+++M  
Sbjct: 490 VAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMES 549

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G +PN VT  S+L  C+       G E    ++ +         ++ +V+++AR G + 
Sbjct: 550 KGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLE 609

Query: 465 EAKSVFDLMSRRDEVTYTSLIAG----YGIQGEGR-VALKLFEEMNKNQIKPDHVTMVAV 519
           EA ++   +  +   +    I G    YG    G+  A  LF    +N +  ++V + ++
Sbjct: 610 EAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSV--NYVVLASI 667

Query: 520 LSA 522
            SA
Sbjct: 668 YSA 670


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/499 (32%), Positives = 282/499 (56%), Gaps = 44/499 (8%)

Query: 203 ACH--------EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ACH        E  + + N L++ Y K G V++AR++FD MLER  VSWNTMI  Y    
Sbjct: 82  ACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNR 141

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           +  EA  +F+EM+ EG + +  T +++   C       GV                    
Sbjct: 142 MESEALDIFLEMRNEGFKFSEFTISSVLSAC-------GV-------------------- 174

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
                  +  AL+  K++H  +V+ C      V  AL+ +Y++C  ++ A  +F+   +K
Sbjct: 175 -------NCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDK 226

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           S +TW+SM++GY      EE+  L+R   R  +E N  T++S++  C+ +A L  GK+ H
Sbjct: 227 SSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMH 286

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             I +   F  ++ + +S V+MYA+ G + E+  +F  +  ++   + ++I+G+      
Sbjct: 287 AVICKSG-FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARP 345

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           +  + LFE+M ++ + P+ VT  ++LS C H+GLV EG++ F+ M + YG+ P + H++C
Sbjct: 346 KEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSC 405

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVD+ GRAGLL++A E+I  +P+ PT+++W +LL +C++++N  + E AAEKL E  PEN
Sbjct: 406 MVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN 465

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           +G +VL++N+YAA   W+++AK R  +RD  V+K+ G +W+D  +    F V ++ + + 
Sbjct: 466 AGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRI 525

Query: 675 QEIYPLLGGLTELMKDAGY 693
           +EI   L  L    +  GY
Sbjct: 526 REICSTLDNLVIKFRKFGY 544



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 188/388 (48%), Gaps = 36/388 (9%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+  C +  A+ + K  H   I + LE +  L+  L+  Y+       A  + +    R 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN +I LY R+   +EAL ++ +M++   +   FT  SVL ACG   D    + +H 
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +  C + +L+V  AL+ +Y K G +  A ++F+ M ++ +V+W++M++ Y     ++E
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  L+   Q   +E N  T +++                                   + 
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSV-----------------------------------IC 271

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           ACS++ AL  GK++H    +  +G    V ++ + MY++C  LR +YI+F    EK++  
Sbjct: 272 ACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLEL 331

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+++SG+      +E   LF +M + G+ PN VT +S+L +C     ++ G+ F   + 
Sbjct: 332 WNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMR 391

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEA 466
                + +++ ++ +V++  R+G + EA
Sbjct: 392 TTYGLSPNVVHYSCMVDILGRAGLLSEA 419



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 129/256 (50%), Gaps = 12/256 (4%)

Query: 60  FTRIRITAASHDVVLD-----------SFAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108
           +TR R+ + + D+ L+           + + ++  CG      + K+LH  ++   ++ N
Sbjct: 137 YTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLN 196

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             +   L+  YA   +  +A  + E+   +  + W+ +++ YV++  Y EAL +Y++ Q 
Sbjct: 197 LYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQR 256

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDV 227
             +  + FT  SV+ AC  +  +  G+ +H+ I  +    ++FV ++ V MY K G +  
Sbjct: 257 MSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRE 316

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           +  +F ++ E++   WNT+IS +A     KE   LF +MQ++G+  N +T++++   C  
Sbjct: 317 SYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGH 376

Query: 288 TGNFKGVLELLSRMRT 303
           TG  +        MRT
Sbjct: 377 TGLVEEGRRFFKLMRT 392



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 3/187 (1%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N   +  IL LCAR   +   K  H  I+R  +  +  LL N L+  Y++ G V  A+ V
Sbjct: 60  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLL-NVLINAYSKCGFVELARQV 118

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           FD M  R  V++ ++I  Y        AL +F EM     K    T+ +VLSAC  +   
Sbjct: 119 FDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDA 178

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           +E  K+   ++    I   L     ++DLY + G++  A ++   M    +S  W++++ 
Sbjct: 179 LEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVA 236

Query: 590 ACQIHRN 596
               ++N
Sbjct: 237 GYVQNKN 243


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 174/521 (33%), Positives = 277/521 (53%), Gaps = 35/521 (6%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
           T+  ++ +C +   + +G  VH C +D+  +   F+   L++MY + G +D A ++FD+ 
Sbjct: 80  TFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDET 139

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
            ER    WN +  A A  G  KE   L+++M   G   +  T+                 
Sbjct: 140 RERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTY----------------- 182

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                     TY+     V  L  C     L+ GKEIH   +R  Y    +V   L+ +Y
Sbjct: 183 ----------TYVLKACVVSELSVC----PLRKGKEIHAHILRHGYEANIHVMTTLLDVY 228

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE--PNYVT 413
           ++   + +A  +F     K+ ++W++M++ +   +   ++  LF+ M        PN VT
Sbjct: 229 AKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVT 288

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
           + ++L  CA +A L+ GK  H YILRR + +  L + N+L+ MY R G+V   + VFD M
Sbjct: 289 MVNMLQACAGLAALEQGKLIHGYILRRQL-DSILPVLNALITMYGRCGEVLMGQRVFDNM 347

Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            +RD V++ SLI+ YG+ G G+ A+++FE M    + P +++ + VL ACSH+GLV EG+
Sbjct: 348 KKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGK 407

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
             FE M S Y I P +EH+ACMVDL GRA  L +A ++I  M + P   +W +LLG+C+I
Sbjct: 408 ILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRI 467

Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
           H N  + E A+  L E  P N+G YVL+A++YA    W +   V   +   G++K+PGC+
Sbjct: 468 HCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCS 527

Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           W++       F+  D  N Q +EI+ LL  L+  MK  GYV
Sbjct: 528 WIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYV 568



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 195/437 (44%), Gaps = 44/437 (10%)

Query: 42  ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           + ++     GNL +A      + +     +    +F H+I+ C +  +L+ G  +H C +
Sbjct: 52  QLIQSLCKGGNLKQA------LHLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLV 105

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
             G +++P L  KL+  Y      + A  + + +  R    WN L       G   E L 
Sbjct: 106 DSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLD 165

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACG----EMMDVDFGRVVHSCI-DACHEWSLFVHNALV 216
           +Y QM       D FTY  VLKAC      +  +  G+ +H+ I    +E ++ V   L+
Sbjct: 166 LYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLL 225

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
            +Y KFG V  A  +F  M  ++ VSW+ MI+ +A   +  +A +LF  M  E       
Sbjct: 226 DVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEAC----- 280

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
             N++                           +SV  V  L AC+ + AL+ GK IHG  
Sbjct: 281 --NSVP--------------------------NSVTMVNMLQACAGLAALEQGKLIHGYI 312

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           +R        V NALITMY RC ++     +F    ++ +++WNS++S Y      +++ 
Sbjct: 313 LRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAI 372

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            +F  M   GV P+Y++  ++L  C+    ++ GK     +L +   +  +  +  +V++
Sbjct: 373 QIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDL 432

Query: 457 YARSGKVPEAKSVFDLM 473
             R+ ++ EA  + + M
Sbjct: 433 LGRANRLGEAIKLIEDM 449



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 136/257 (52%), Gaps = 12/257 (4%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL--YNNACFLVENSNIRYPLPWN 144
           V  L +GK++HA  +  G E N  ++  L+  YA F    Y N+ F    +  +  + W+
Sbjct: 196 VCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPT--KNFVSWS 253

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRG--DNFTYPSVLKACGEMMDVDFGRVVHSCID 202
            +I+ + ++    +AL +++ M         ++ T  ++L+AC  +  ++ G+++H  I 
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYIL 313

Query: 203 ACHEWSLF-VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                S+  V NAL++MYG+ G+V + +R+FD M +RD VSWN++IS Y   G  K+A Q
Sbjct: 314 RRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQ 373

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTG---NFKGVLE-LLSRMRTQETYLDSVATVIGL 317
           +F  M  +GV  + I++ T+ G C   G     K + E +LS+ R           V  L
Sbjct: 374 IFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLL 433

Query: 318 GACSHVG-ALKLGKEIH 333
           G  + +G A+KL +++H
Sbjct: 434 GRANRLGEAIKLIEDMH 450


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 283/554 (51%), Gaps = 46/554 (8%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN +   Y ++  + + + +++QM+   +  + FT+P +LK+C ++  +  G  VH   I
Sbjct: 19  WNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINALKEGEEVHCFVI 78

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            +    + FV   L+ MY   G +  A R+F +M+ER+ ++W  MI+ Y +      A +
Sbjct: 79  KSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARR 138

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF    +   E +++ WNT+  G +   +     EL  +M  ++                
Sbjct: 139 LF----DLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVM-------------- 180

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
                                      N ++  Y+   D+     LF+   E+++ +WN+
Sbjct: 181 -------------------------SWNTVLNGYASNGDVMACERLFEEMPERNVFSWNA 215

Query: 382 MLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           ++ GYT   C  E    F+ M   G V PN  T+ ++L  CAR+  L  GK  H Y    
Sbjct: 216 LIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESH 275

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
             +  ++ + N+L++MYA+ G V  A  VF  M  +D +++ ++I G  + G G  AL L
Sbjct: 276 G-YKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNL 334

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F  M      PD +T + +L AC+H GLV +G   F+ MT  Y I P++EH+ C+VDL G
Sbjct: 335 FSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLG 394

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620
           RAGLL  A + I KMP    + +WA LLGAC++++N  + E A EKL+E  P+N   YV+
Sbjct: 395 RAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVM 454

Query: 621 IANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPL 680
           ++N+Y   G W  +A+++  MRD G +K+PGC+ ++  +    F   D  + + ++IY  
Sbjct: 455 LSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGT 514

Query: 681 LGGLTELMKDAGYV 694
           L  LT+L++ +GYV
Sbjct: 515 LRTLTKLLRSSGYV 528



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 181/414 (43%), Gaps = 44/414 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  I+  C K+ AL +G+++H   I  G   NP +   L+  YAS    + A  +    
Sbjct: 53  TFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEM 112

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  +I+ Y+         C    + +RR+                        
Sbjct: 113 IERNVIAWTAMINGYI-------TCC--DLVTARRL------------------------ 139

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
                 D   E  + + N ++S Y +   V  AR LFDKM  +D +SWNT+++ YAS G 
Sbjct: 140 -----FDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGD 194

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
                +LF EM E     NV +WN + GG  R G F  VL    RM    T + + AT++
Sbjct: 195 VMACERLFEEMPER----NVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLV 250

Query: 316 G-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +GAL LGK +H  A    Y     VRNAL+ MY++C  +  A  +FK    K
Sbjct: 251 NVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNK 310

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +I+WN+++ G        ++  LF  M  +G  P+ +T   IL  C  +  ++ G  + 
Sbjct: 311 DLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYF 370

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
             +         +  +  +V++  R+G +  A      M    D V + +L+  
Sbjct: 371 KSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGA 424



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 156/368 (42%), Gaps = 47/368 (12%)

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A ++FD++ E +A  WN M   Y+     K+   LF +M+   V  N  T+  I      
Sbjct: 4   AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVI------ 57

Query: 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347
                                        L +C  + ALK G+E+H   ++  +     V
Sbjct: 58  -----------------------------LKSCVKINALKEGEEVHCFVIKSGFRANPFV 88

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
              LI MY+    +  AY +F    E+++I W +M++GY  + C +      R +F    
Sbjct: 89  ATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGY--ITCCD--LVTARRLFDLAP 144

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           E + V   +++       ++   +E     L   M N+ ++ WN+++  YA +G V   +
Sbjct: 145 ERDIVLWNTMISGYIEAKDVIRARE-----LFDKMPNKDVMSWNTVLNGYASNGDVMACE 199

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM-NKNQIKPDHVTMVAVLSACSHS 526
            +F+ M  R+  ++ +LI GY   G     L  F+ M     + P+  T+V VLSAC+  
Sbjct: 200 RLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARL 259

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G +  G K        +G    +     ++D+Y + G++  A ++   M      + W T
Sbjct: 260 GALDLG-KWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLIS-WNT 317

Query: 587 LLGACQIH 594
           ++G   +H
Sbjct: 318 IIGGLAVH 325



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 49/309 (15%)

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           + +A+ +F    E +   WN+M  GY+  +  ++   LFR+M    V PN  T   IL  
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           C ++  L+ G+E HC++++   F  +  +  +L++MYA  G +  A  VF  M  R+ + 
Sbjct: 61  CVKINALKEGEEVHCFVIKSG-FRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIA 119

Query: 481 YTSLIAGYGIQGEGRVALKLFE---------------------------EMNKNQIKPDH 513
           +T++I GY    +   A +LF+                           E+       D 
Sbjct: 120 WTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDV 179

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA--CMVDLYGRAG----LLNK 567
           ++   VL+  + +G V+  ++ FE M       P+   F+   ++  Y R G    +L+ 
Sbjct: 180 MSWNTVLNGYASNGDVMACERLFEEM-------PERNVFSWNALIGGYTRNGCFSEVLSA 232

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
            K ++      P  A    +L AC       +G+W     +    E+ GY     N+Y  
Sbjct: 233 FKRMLVDGTVVPNDATLVNVLSACARLGALDLGKW-----VHVYAESHGYK---GNVYVR 284

Query: 628 TGCWDKLAK 636
               D  AK
Sbjct: 285 NALMDMYAK 293



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 19/266 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRI--TAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG 104
           +   G  S+   AF R+ +  T   +D  L    +++  C ++ AL  GK +H  A + G
Sbjct: 220 YTRNGCFSEVLSAFKRMLVDGTVVPNDATL---VNVLSACARLGALDLGKWVHVYAESHG 276

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
            + N  +   L+  YA   +   A  + ++ + +  + WN +I      G  A+AL ++ 
Sbjct: 277 YKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFS 336

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV----HNALVSMYG 220
            M+      D  T+  +L AC  M  V+ G      +    ++S+      +  +V + G
Sbjct: 337 HMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSM--TDDYSIVPRIEHYGCIVDLLG 394

Query: 221 KFGQVDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVI 276
           + G +  A     KM +E DAV W  ++ A   Y +  L + A +  +E + +    N +
Sbjct: 395 RAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKN-PANYV 453

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMR 302
             + I G     G +K V  L   MR
Sbjct: 454 MLSNIYGD---FGRWKDVARLKVAMR 476


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 182/598 (30%), Positives = 306/598 (51%), Gaps = 37/598 (6%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LHAC I  G   +  L   ++  Y       +A  L E  + R  + WN L+S Y + G 
Sbjct: 168 LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGN 227

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNA 214
             E L +  +M++  I  D  T+ S++ A      +  G++VH  I  A  E    +  +
Sbjct: 228 IREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETS 287

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+ MY K G V+ A R+F+ M+ +D +SW  MIS          A  +F  M        
Sbjct: 288 LIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRM-------- 339

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
                                 L SR+      + SV     L AC+ +G+  LG  +HG
Sbjct: 340 ----------------------LKSRVMPSTATIASV-----LAACAELGSFPLGTSVHG 372

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             +R         +N+L+TMY++C  L  +  +F   + + I++WN+++SG+       +
Sbjct: 373 YILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCK 432

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  LF EM ++   P+ +T+ S+L  CA +  L  GK  H ++ +  +    +L+  +LV
Sbjct: 433 ALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCL-GPCILIDTALV 491

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MY++ G +  A+  FD M ++D V+++S+IAGYG  G+G  AL+++ +     I+P+HV
Sbjct: 492 DMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHV 551

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
             +++LSACSH+GLV +G   F  MT  +GI P+LEH AC+VDL  RAG + +A     +
Sbjct: 552 IYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKR 611

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           M   P+  +   LL AC+   N  +G+  A +++  +P N+G YV +A+ YA+   WD +
Sbjct: 612 MFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGV 671

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAG 692
            +V T M+ L ++K+PG ++++     + F  D +S+ Q +EI  +L  L   M+  G
Sbjct: 672 GEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEIMLVLKILGSEMRKVG 729



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 157/577 (27%), Positives = 277/577 (48%), Gaps = 50/577 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C  +   + G   H   I  G   +  +   L+ FY+ F    +A  + +  
Sbjct: 50  TFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTM 109

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + R  +PW  +I  Y R G +  A  +Y  M+ + I+  + T   +L    E++ +   +
Sbjct: 110 DDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHL---Q 166

Query: 196 VVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H+C I       + + N+++++Y K G+V+ A+ LF+ M  RD               
Sbjct: 167 CLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARD--------------- 211

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                               VI+WN++  G  + GN + VL+LL RM+T     D     
Sbjct: 212 --------------------VISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + A +    L +GK +HG  +R    +  ++  +LI MY +C ++  A+ +F+    K
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            +I+W +M+SG    DCA+ +  +FR M +S V P+  TIAS+L  CA + +   G   H
Sbjct: 312 DVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVH 371

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            YILR+ +    +   NSLV MYA+ G + ++ SVFD MSRRD V++ ++++G+   G  
Sbjct: 372 GYILRQRI-KLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHL 430

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL LF EM K + +PD +T+V++L AC+  G + +G K      +   + P +     
Sbjct: 431 CKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQG-KWIHNFVTKSCLGPCILIDTA 489

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA----AEKLLET 610
           +VD+Y + G L  A++   +MP     + W++++     H   G GE A    ++ L   
Sbjct: 490 LVDMYSKCGDLGSAQKCFDRMPQQDLVS-WSSIIAGYGSH---GKGETALRMYSDFLHTG 545

Query: 611 RPENSGYYVLIANMYAATGCWDK-LAKVRTCMRDLGV 646
              N   Y+ I +  +  G  D+ L+   +  +D G+
Sbjct: 546 IQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGI 582



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 199/440 (45%), Gaps = 53/440 (12%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           +N +I+     G + + L  Y  M S     D  T+PS++KAC  +     G   H   I
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
              +    ++  +L++ Y KFG    AR++FD M +R+ V W TMI  Y   G    AF 
Sbjct: 76  VDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFS 135

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           ++  M+ +G++ + +T           G   GVLEL+                     C 
Sbjct: 136 MYNIMRRQGIQPSSVTM---------LGLLSGVLELVHLQ------------------CL 168

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
           H   ++ G           +G    + N+++ +Y +C  +  A  LF++   + +I+WNS
Sbjct: 169 HACVIQYG-----------FGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNS 217

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++SGY  L    E   L   M   G+EP+  T  S++   A  + L  GK  H +IL RA
Sbjct: 218 LVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHIL-RA 276

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
              +   +  SL+ MY + G V  A  +F+ M  +D +++T++I+G        +A+ +F
Sbjct: 277 GLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVF 336

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG------IFPQLEHFACM 555
             M K+++ P   T+ +VL+AC+  G        F   TS++G      I   +     +
Sbjct: 337 RRMLKSRVMPSTATIASVLAACAELG-------SFPLGTSVHGYILRQRIKLDIPSQNSL 389

Query: 556 VDLYGRAGLLNKAKEIITKM 575
           V +Y + G L ++  +  +M
Sbjct: 390 VTMYAKCGHLEQSCSVFDRM 409



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 146/317 (46%), Gaps = 7/317 (2%)

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           ++N I       G F  VL   S M + +T  D+      + AC+ +     G   H   
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           +   Y     +  +LI  YS+    + A  +F    +++++ W +M+  YT     + + 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            ++  M R G++P+ VT   +L L + V  L H +  H  +++   F   + L NS++ +
Sbjct: 135 SMYNIMRRQGIQPSSVT---MLGLLSGVLELVHLQCLHACVIQYG-FGSDVALANSMLNV 190

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           Y + G+V +A+++F+LM  RD +++ SL++GY   G  R  L+L   M  + I+PD  T 
Sbjct: 191 YCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTF 250

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-ACMVDLYGRAGLLNKAKEIITKM 575
            +++SA +    +  G+     +  +     Q  H    ++ +Y + G +N A  I   M
Sbjct: 251 GSLVSAAAMQSKLGVGKMVHGHI--LRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308

Query: 576 PYTPTSAMWATLLGACQ 592
            +    +  A + G  Q
Sbjct: 309 MHKDVISWTAMISGLVQ 325



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 4/196 (2%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           A  G+L KA   F  +R      D +  +   ++  C  + AL QGK +H       L  
Sbjct: 425 AQNGHLCKALLLFNEMRKARQRPDSI--TVVSLLQACASIGALHQGKWIHNFVTKSCLGP 482

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQ 167
             ++   LV  Y+      +A    +    +  + W+ +I+ Y   G    AL +Y    
Sbjct: 483 CILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFL 542

Query: 168 SRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSCI-DACHEWSLFVHNALVSMYGKFGQV 225
              I+ ++  Y S+L AC     VD G    HS   D   E  L     +V +  + G+V
Sbjct: 543 HTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRV 602

Query: 226 DVARRLFDKMLERDAV 241
           + A   + +M  + ++
Sbjct: 603 EEAYSFYKRMFPKPSM 618


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/645 (29%), Positives = 328/645 (50%), Gaps = 44/645 (6%)

Query: 57  FEAFTRIRITAASHDVVLDSFAHIIF---CCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
            EA+   R    S D ++   A ++     C     +  G  +H  A+ LGL    ++  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCN 352

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM--QSRRI 171
            L+  Y+     + A  L      +  + WN +I  Y R+GF  E   + ++M  +   +
Sbjct: 353 ALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELM 412

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
             +  T  ++L AC E  ++   R +H   +    ++   ++NA ++ Y K G +  A  
Sbjct: 413 EVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEH 472

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +F  M        NT                            +V +WN + GG  + G+
Sbjct: 473 VFFGM--------NTK---------------------------SVSSWNAVIGGHAQNGD 497

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
               L+    M       D  + V  L AC  +G L+ GKEIHG  +R        V  +
Sbjct: 498 PIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVS 557

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           L+++Y  C    +    F+   +K+ + WN+MLSGY+  +   E+  LFR+M   G+EP+
Sbjct: 558 LLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPD 617

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            + IASIL  C++++ L  GKE HC+ L+ ++  ++ +   SL++MYA+SG +  ++ +F
Sbjct: 618 EIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVAC-SLMDMYAKSGFLGHSQRIF 676

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           + ++ ++  ++  +I G+G+ G+G  A++LFE+M ++  +PD  T + VL AC H+GLV 
Sbjct: 677 NRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVS 736

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           EG     +M ++Y + P+LEH+AC++D+ GRAG LN+A   I +MP  P + +W++LL +
Sbjct: 737 EGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSS 796

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
              + +  +GE  AEKLL      +  Y+L++N+YA  G WD +  VR  M+DL ++K  
Sbjct: 797 SITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDV 856

Query: 651 GCAWVD-AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           GC+W++  G V+S F+  + SN  + EI  +   L + + + GY 
Sbjct: 857 GCSWIELRGKVYS-FIAGENSNPSSDEIRKMWNRLEKQIVEIGYT 900



 Score =  215 bits (547), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 178/640 (27%), Positives = 294/640 (45%), Gaps = 83/640 (12%)

Query: 35  IMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVL--DSFAHIIFCCGKVKALAQ 92
           + +++LLE +      G+L+ A +   R     A +D+    ++   ++  CG+ K +  
Sbjct: 66  VSQLSLLEEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEI 125

Query: 93  GKQL-HACAIALGLEKNPVLVPKLVTFYA--SFSLYNNACF-LVENSNIRYPLPWNLLIS 148
           G++L     ++     + VL  +L+T Y+   + L +   F  + N N+     WN L+S
Sbjct: 126 GRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNL---FQWNALVS 182

Query: 149 LYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHE 206
            YVR+  Y EA+  + ++ S    + DNFT+P ++KAC    D+  G+ VH   +     
Sbjct: 183 GYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLI 242

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
             LFV NA++++YGK G +D A  LFDKM E++ +SWN++I  ++  G W EA++ F  +
Sbjct: 243 MDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSL 302

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGA 325
            E G                                  +  +  VAT++  L  CS  G 
Sbjct: 303 LESG----------------------------------DGLIPDVATMVTLLPVCSGEGN 328

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           + +G  IHG AV+        V NALI MYS+C  L  A ILF+    KS+++WNSM+  
Sbjct: 329 VDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGA 388

Query: 386 YTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           Y+      E+  L R+M+     +E N VTI ++LP C   + L   +  H Y LR + F
Sbjct: 389 YSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHS-F 447

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
               L+ N+ +  YA+ G +  A+ VF  M+ +   ++ ++I G+   G+   AL  + E
Sbjct: 448 QYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFE 507

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQ-------KQFERMTSIYGIFPQLEHFACMV 556
           M +  I PD  ++V++L AC   GL+  G+       +    M S   +     +F C  
Sbjct: 508 MTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSK 567

Query: 557 DLYGRA-----------------------GLLNKAKEIITKM---PYTPTSAMWATLLGA 590
             YGR                         L N+A  +  +M      P     A++LGA
Sbjct: 568 PFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGA 627

Query: 591 CQIHRNTGIG-EWAAEKLLETRPENSGYYVLIANMYAATG 629
           C      G+G E     L  +  E++     + +MYA +G
Sbjct: 628 CSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSG 667


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 193/639 (30%), Positives = 327/639 (51%), Gaps = 45/639 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEK-NPVLVPKLVTFYASFSLYNNACFLVENS 135
            A ++  CG+   L +G+ LHA  +  G    +  L   L+T Y+  +   +A  L    
Sbjct: 173 LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 232

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  L+S   ++  +A+AL  +  M+   +    F   S  +A   +      R
Sbjct: 233 PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRAR 292

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
              +      +  LFV + L  MY K G +  A R+FD+M ++DAV+W  MI  YA  G 
Sbjct: 293 SCTASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGS 352

Query: 256 WKEAFQLFVEMQEEGV---EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            + A   F +M+ EG+   + +V      A G L+ G                       
Sbjct: 353 LEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDG----------------------- 389

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
                          L K IH    +  +     VRNALI MY++  D+  A  + K+  
Sbjct: 390 --------------WLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDP 435

Query: 373 EK-SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
              ++++  SM+ GY   DC EE+  ++ E+ R GVEPN  T +S++  CA  A L+ G 
Sbjct: 436 GGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGA 495

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  +++  +  +  +  ++LV+MY + G +  +  +F+ +  R ++ + ++I  +   
Sbjct: 496 QLHAQVIKTDLIRDSFV-GSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQH 554

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G GR A++ F+ M  + I+P+H+  V++L+ACSH+GLV EG K F  M   +GI P+ EH
Sbjct: 555 GHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEH 614

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           ++C++D YGRAG L++A + I++MP  P +  W +LLGAC++  +  +GE AA+ L++  
Sbjct: 615 YSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLE 674

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN 671
           P N+G +V ++ +YA+ G W+ +  VR  MRD  ++K+PG +WVD+      F  +D S+
Sbjct: 675 PGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSH 734

Query: 672 VQAQEIYPLLGGLTELMKDAGYVVKEEF--CSEEEIVEE 708
            Q ++IY  L  LT  +K+ GY+    F  C+ E+I +E
Sbjct: 735 PQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKE 773



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 185/418 (44%), Gaps = 28/418 (6%)

Query: 180 SVLKACGEMMDVDFGRVVHS--CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
           S+L++CG   D+  GR++H+   +      S F+ N L++MY     +  A RLF  M  
Sbjct: 25  SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPR 84

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW-----------NTIAGGCL 286
           R+AVSW T++S  +   +  +A   F  M+  GV    + +           +T+A    
Sbjct: 85  RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHC 144

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLG----ACSHVGALKLGKEIHGSAV-RGCY 341
            +G    V     R+        + AT + L     +C   G L+ G+ +H   V  G  
Sbjct: 145 HSGPTLMVKYWGQRLWRPPA--PAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAA 202

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                + N LITMYS C DL  A  LF     ++ ++W +++SG +      ++   F  
Sbjct: 203 AASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAA 262

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M R+GV P    ++S     A +      +   C       F+  L + ++L +MY++ G
Sbjct: 263 MRRAGVAPTRFALSSAARAAAALGAPLRARS--CTASASVGFDTELFVASNLADMYSKCG 320

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVL 520
            + EA  VFD M ++D V +T++I GY   G    A+  F +M +   +  D     +VL
Sbjct: 321 LLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVL 380

Query: 521 SACSHSGLVVEG--QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           SA   SG + +G   K      +  G   ++     ++D+Y ++  +  A  ++   P
Sbjct: 381 SA---SGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDP 435



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 118/257 (45%), Gaps = 21/257 (8%)

Query: 44  LKDFAGRGNLSKAFEAFTRIR---ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACA 100
           +  +A  G+L  A  +F  ++   +  A   V    F  ++   G +K     K +H C 
Sbjct: 344 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHV----FCSVLSASGGLKDGWLSKSIHCCV 399

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF----- 155
              G E    +   L+  YA      +A  +++      P  WN++    + DG+     
Sbjct: 400 TKAGFELEVAVRNALIDMYAKSMDVESASRVLKID----PGGWNVVSGTSMIDGYIETDC 455

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVH 212
             EAL +Y +++ + +  + FT+ S++K C     ++ G  +H+ +   D   +   FV 
Sbjct: 456 VEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRD--SFVG 513

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           + LV MYGK G + ++ +LF+++  R  ++WN +I+ +A  G  +EA Q F  M   G+ 
Sbjct: 514 STLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIR 573

Query: 273 VNVITWNTIAGGCLRTG 289
            N I + ++   C   G
Sbjct: 574 PNHIAFVSLLTACSHAG 590



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 125/322 (38%), Gaps = 51/322 (15%)

Query: 317 LGACSHVGALKLGKEIHGSAV-RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
           L +C   G L+ G+ +H   V  G       + N LITMYS C DL  A  LF     ++
Sbjct: 27  LQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRN 86

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN------------------------- 410
            ++W +++SG +      ++   F  M R+GV P                          
Sbjct: 87  AVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHCHS 146

Query: 411 -----------------------YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
                                   V +AS+L  C R  +L+ G+  H  ++         
Sbjct: 147 GPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAAST 206

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            L N L+ MY+    +  A  +F  M RR+ V++T+L++G         AL  F  M + 
Sbjct: 207 FLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRA 266

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
            + P    + +   A +  G  +  +      ++  G   +L   + + D+Y + GLL++
Sbjct: 267 GVAPTRFALSSAARAAAALGAPLRARSC--TASASVGFDTELFVASNLADMYSKCGLLSE 324

Query: 568 AKEIITKMPYTPTSAMWATLLG 589
           A  +  +MP     A  A + G
Sbjct: 325 ACRVFDQMPQKDAVAWTAMIDG 346



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ +I  C     L QG QLHA  I   L ++  +   LV  Y    L + +  L    
Sbjct: 477 TFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 536

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+++ + G   EA+  + +M    IR ++  + S+L AC     VD G 
Sbjct: 537 EYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGL 596

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
                +   H  E     ++ ++  YG+ G++D A +   +M ++ +A  W +++ A   
Sbjct: 597 KYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRM 656

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNV 275
             SK L + A Q  ++++     ++V
Sbjct: 657 RGSKELGEVAAQNLMKLEPGNTGIHV 682



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 26/190 (13%)

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           V +AS+L  C R  +L+ G+  H  ++          L N L+ MY+    +  A  +F 
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 80

Query: 472 LMSRRDEVTYTSLIAGYG--------------IQGEGRVALKL-FEEMNKNQIKPDHVTM 516
            M RR+ V++T+L++G                ++  G    +L +E    N + P H T+
Sbjct: 81  AMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKH-TL 139

Query: 517 VAVLSACSHSG--LVVE--GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            A  S C HSG  L+V+  GQ+ +              H A ++   GRAG L + + + 
Sbjct: 140 AA--SHC-HSGPTLMVKYWGQRLWRPPAPAAAT---TVHLASLLQSCGRAGDLRRGRLLH 193

Query: 573 TKMPYTPTSA 582
            ++  +  +A
Sbjct: 194 ARLVLSGAAA 203


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 190/655 (29%), Positives = 324/655 (49%), Gaps = 52/655 (7%)

Query: 39  NLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFC--CGKVKALAQGKQL 96
           NLL  +  ++  G    + E F R R +A    V  D F +      C +   L +GK +
Sbjct: 82  NLL--IDAYSRAGQPEASLETFARARRSAG---VRADRFTYAAALAACSRAGRLREGKAV 136

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           HA ++  G+     +   LV+ YA       A  + + ++ R  + WN L+S YVR G  
Sbjct: 137 HALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQ 196

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD--VDFGRVVHSCI-DACHEWSLFVHN 213
            + L V+  M+   I  ++F   SV+K C    D  +D    VH C+  A  +  +F+ +
Sbjct: 197 DDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLAS 256

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMIS------AYASKGLWKEAFQLFVEMQ 267
           A+V MY K G +  A  LF  +L+ + V +N MI+      A     + +EA  L+ E+Q
Sbjct: 257 AMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQ 316

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327
             G+E    T++++                                   + AC+  G ++
Sbjct: 317 SRGMEPTEFTFSSV-----------------------------------IRACNLAGDIE 341

Query: 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387
            GK+IHG  ++ C+   + + +ALI +Y     +   +  F    ++ ++TW +M+SG  
Sbjct: 342 FGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCV 401

Query: 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
             +  E +  LF E+  +G++P+  TI+S++  CA +A  + G++  C+  +   F    
Sbjct: 402 QNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSG-FGRFT 460

Query: 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507
            + NS + MYARSG V  A   F  M   D V+++++I+ +   G  R AL+ F EM   
Sbjct: 461 AMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDA 520

Query: 508 QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
           ++ P+ +T + VL+ACSH GLV EG K +E M   Y + P ++H  C+VDL GRAG L  
Sbjct: 521 KVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLAD 580

Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627
           A+  I    +     +W +LL +C+IHR+   G+  A++++E +P +S  YV + N+Y  
Sbjct: 581 AEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLD 640

Query: 628 TGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
            G     +K+R  M++ GV+K PG +W++  +    F+  D S+ ++  IY  L 
Sbjct: 641 AGELSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLA 695



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 184/413 (44%), Gaps = 66/413 (15%)

Query: 197 VHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           VH+ I   H   SLF+ N L++ Y + G    ARRL D+M   +AVS+N +I AY+  G 
Sbjct: 36  VHAHIVRAHPSPSLFLRNTLLAAYCRLG--GHARRLLDEMPRTNAVSFNLLIDAYSRAGQ 93

Query: 256 WKEAFQLFVEMQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
            + + + F   +   GV  +  T+      C R G                         
Sbjct: 94  PEASLETFARARRSAGVRADRFTYAAALAACSRAGR------------------------ 129

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
                      L+ GK +H  +V         V N+L++MY+RC D+  A  +F    E+
Sbjct: 130 -----------LREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADER 178

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA-------RVANL 427
             ++WN+++SGY      ++   +F  M RSG+  N   + S++  CA        +A  
Sbjct: 179 DDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAA 238

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
            HG    C +  +A F+  + L +++V MYA+ G + EA ++F  +   + V + ++IAG
Sbjct: 239 VHG----CVV--KAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAG 292

Query: 488 YGIQGEG-------RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
              + E        R AL L+ E+    ++P   T  +V+ AC+ +G +  G++   ++ 
Sbjct: 293 L-CRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQV- 350

Query: 541 SIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
            +   F Q + F  + ++DLY  +G +       T +P       W  ++  C
Sbjct: 351 -LKHCF-QGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDV-VTWTAMISGC 400


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/569 (30%), Positives = 297/569 (52%), Gaps = 38/569 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C +      G +LH  A+ +G   +  ++  LV  YA       A  + E    R  + W
Sbjct: 143 CIRSADYGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSW 201

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCID 202
             ++S  V++GF A+ L ++ +M+   +    +T  +V+ AC  ++ +  GR +H S I 
Sbjct: 202 TSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIK 261

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                + F+  AL+ MY K G+++ A+ +FD++   D V W TMI  Y   G   +A +L
Sbjct: 262 QGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRL 321

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F++ +   +  N +T                                 +ATV  L A + 
Sbjct: 322 FLDKKFANIVPNSVT---------------------------------IATV--LSASAQ 346

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +  L LG+ IHG AV+    EY  V NAL+ MY++C+ +  A  +F   + K ++ WNSM
Sbjct: 347 LRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSM 406

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           LSGY   +   ++  LF++M   G  P+ +++   L     + +L  GK FH Y ++ A 
Sbjct: 407 LSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHA- 465

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F  ++ +  +L+ +Y + G +P A+ VFD M+ R+ VT+ ++I GYG+QG+   ++ LF 
Sbjct: 466 FLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFG 525

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           EM K+ + P+ V   ++LS CSH+G+V   ++ F+ M   + I P ++H+ACMVD+  RA
Sbjct: 526 EMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARA 585

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G L +A E I  MP    +++W   L  C++H     GE A ++++   PE    YVLI+
Sbjct: 586 GNLEEALEFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLIS 645

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
           N+Y + G W+K   +R  M++ G+ K+PG
Sbjct: 646 NLYTSNGMWEKSQAIRRWMQEKGLVKLPG 674



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 224/480 (46%), Gaps = 41/480 (8%)

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI-- 171
           KL++ YA+     +A  + + +       + +++   V+   +AEA+ +++ M+ RR   
Sbjct: 69  KLLSCYAALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCP 128

Query: 172 -RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
              D+F     LKAC    D  +G  +H           FV N+LV MY K G ++ AR+
Sbjct: 129 EAQDDFVLSLALKACIRSADYGYGTRLHCDAVKVGGADGFVMNSLVDMYAKAGDLECARK 188

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +F+++  R+ VSW +M+S     G   +   LF +M+++ V  +  T             
Sbjct: 189 VFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYT------------- 235

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                               +ATVI   ACS +  L  G+ +HGS ++        +  A
Sbjct: 236 --------------------IATVI--TACSALIGLHQGRWMHGSVIKQGLMSNSFISAA 273

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           L+ MY +C +L  A  +F   +   ++ W +M+ GYT      ++  LF +   + + PN
Sbjct: 274 LLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPN 333

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            VTIA++L   A++ +L  G+  H   ++  +  E+ ++ N+LV+MYA+   V EA  +F
Sbjct: 334 SVTIATVLSASAQLRDLSLGRSIHGIAVKLGLV-EYTVVVNALVDMYAKCQAVSEANRIF 392

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
             +S +D V + S+++GY        AL LF++M+     PD +++V  LSA    G ++
Sbjct: 393 GSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLL 452

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
            G K F      +     +     +++LY + G L  A+ +  +M     S  W  ++G 
Sbjct: 453 IG-KSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMN-DRNSVTWCAMIGG 510



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 1/215 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++    +++ L+ G+ +H  A+ LGL +  V+V  LV  YA     + A  +  + 
Sbjct: 336 TIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSI 395

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + WN ++S Y  +    +AL ++KQM  +    D  +    L A   + D+  G+
Sbjct: 396 SNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGK 455

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
             H   +      +++V  AL+++Y K G +  ARR+FD+M +R++V+W  MI  Y  +G
Sbjct: 456 SFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQG 515

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
               +  LF EM ++GV  N + + +I   C  TG
Sbjct: 516 DSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTG 550


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/543 (32%), Positives = 275/543 (50%), Gaps = 51/543 (9%)

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVH 212
           G   +AL  +  M  R    D+FTY  ++KA      V   R VHS  +        FV 
Sbjct: 112 GAPRDALAAFSAMPRR----DSFTYSFLIKAL-SAAGVAPVRAVHSHVVKLGSVEDTFVG 166

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           NAL+  Y K G    AR++FD+M ERD VSWNT ++A   +G      +LF EM E+   
Sbjct: 167 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK--- 223

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            + ++WNTI  G  + G  +   EL  RM   E  + S +T                   
Sbjct: 224 -DTVSWNTILDGYTKAGEVEAAFELFQRM--PERNVVSWST------------------- 261

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
                             +++ Y +  DL  A ++F     K+++TW  M+S        
Sbjct: 262 ------------------MVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 303

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           +E+  LF +M  + VE +   + SIL  CA   +L  GK  H Y+ +R +      + N+
Sbjct: 304 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNL-GRSTHVCNA 362

Query: 453 LVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           L++M+ + G V  A  VFD  + ++D V++ S+I G+ + G G  AL+LF +M +    P
Sbjct: 363 LIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNP 422

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D VTM+ VLSAC+H G V EG++ F  M   YGI PQ+EH+ CM+DL GR GL+ +A ++
Sbjct: 423 DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 482

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I  MP+ P   +W +LL AC++H+N    E A  +L + +P N+G Y +++N+YA  G W
Sbjct: 483 IKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQW 542

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDA 691
             +AK R  M+  G +K  G +WV+    F  F V D  +  + +I  ++  L+  +K  
Sbjct: 543 SDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHV 602

Query: 692 GYV 694
           G V
Sbjct: 603 GCV 605



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 202/454 (44%), Gaps = 55/454 (12%)

Query: 75  DSFAHIIFCCGKVKALAQG-----KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           DSF +       +KAL+       + +H+  + LG  ++  +   L+  Y+    +++A 
Sbjct: 128 DSFTYSFL----IKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 183

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            + +    R  + WN  ++  VR+G  A    ++ +M  +    D  ++ ++L    +  
Sbjct: 184 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAG 239

Query: 190 DVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +V+             E ++   + +VS Y K G +++AR +FDKM  ++ V+W  M+SA
Sbjct: 240 EVE---AAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSA 296

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
            A KGL  EA +LF +M+E  VE                                   LD
Sbjct: 297 CAQKGLVDEAGKLFAQMKEASVE-----------------------------------LD 321

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA-YILF 368
             A V  L AC+  G+L LGK IH    +   G   +V NALI M+ +C  +  A Y+  
Sbjct: 322 VAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFD 381

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
             T +K  ++WNS++ G+      +++  LF +M + G  P+ VT+ ++L  C  +  + 
Sbjct: 382 TETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVD 441

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
            G+     + R       +  +  ++++  R G + EA  +   M    +EV + SL++ 
Sbjct: 442 EGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSA 501

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             +      A     E++K  ++P +    AVLS
Sbjct: 502 CRLHKNVEYAEIAVNELSK--LQPSNAGNYAVLS 533



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 95/208 (45%), Gaps = 10/208 (4%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK 107
           A +G + +A + F +++  +   DV   +   I+  C +  +L+ GK++H       L +
Sbjct: 298 AQKGLVDEAGKLFAQMKEASVELDVA--AVVSILAACAESGSLSLGKRIHRYVRKRNLGR 355

Query: 108 NPVLVPKLVTFYASFSLYNNACFLVENSNI-RYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           +  +   L+  +      N A ++ +   + +  + WN +I  +   G   +AL ++ QM
Sbjct: 356 STHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQM 415

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV----HNALVSMYGKF 222
           + +    D  T  +VL AC  M  VD GR   S ++   ++ +      +  ++ + G+ 
Sbjct: 416 KQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNME--RDYGIMPQIEHYGCMIDLLGRG 473

Query: 223 GQVDVARRLFDKM-LERDAVSWNTMISA 249
           G +  A  L   M  E + V W +++SA
Sbjct: 474 GLIKEAVDLIKSMPWEPNEVIWGSLLSA 501


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/525 (33%), Positives = 269/525 (51%), Gaps = 47/525 (8%)

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
           R D+FTY  ++KA      V   R VHS  +        FV NAL+  Y K G    AR+
Sbjct: 3   RRDSFTYSFLIKAL-SAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 61

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +FD+M ERD VSWNT ++A   +G      +LF EM E+    + ++WNTI  G  + G 
Sbjct: 62  VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAGE 117

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
            +   EL  RM   E  + S +T                                     
Sbjct: 118 VEAAFELFQRM--PERNVVSWST------------------------------------- 138

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           +++ Y +  DL  A ++F     K+++TW  M+S        +E+  LF +M  + VE +
Sbjct: 139 MVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELD 198

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
              + SIL  CA   +L  GK  H Y+ +R +      + N+L++M+ + G V  A  VF
Sbjct: 199 VAAVVSILAACAESGSLSLGKRIHRYVRKRNL-GRSTHVCNALIDMFCKCGCVNRADYVF 257

Query: 471 DLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           D  + ++D V++ S+I G+ + G G  AL+LF +M +    PD VTM+ VLSAC+H G V
Sbjct: 258 DTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFV 317

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG++ F  M   YGI PQ+EH+ CM+DL GR GL+ +A ++I  MP+ P   +W +LL 
Sbjct: 318 DEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLS 377

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC++H+N    E A  +L + +P N+G Y +++N+YA  G W  +AK R  M+  G +K 
Sbjct: 378 ACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKT 437

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            G +WV+    F  F V D  +  + +I  ++  L+  +K  G V
Sbjct: 438 AGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHVGCV 482



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 203/454 (44%), Gaps = 55/454 (12%)

Query: 75  DSFAHIIFCCGKVKALAQG-----KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC 129
           DSF +       +KAL+       + +H+  + LG  ++  +   L+  Y+    +++A 
Sbjct: 5   DSFTYSFL----IKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 60

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
            + +    R  + WN  ++  VR+G  A    ++ +M  +    D  ++ ++L    +  
Sbjct: 61  KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAG 116

Query: 190 DVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +V+             E ++   + +VS Y K G +++AR +FDKM  ++ V+W  M+SA
Sbjct: 117 EVE---AAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSA 173

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
            A KGL  EA +LF +M+E  VE++V                                  
Sbjct: 174 CAQKGLVDEAGKLFAQMKEASVELDV---------------------------------- 199

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA-YILF 368
             A V  L AC+  G+L LGK IH    +   G   +V NALI M+ +C  +  A Y+  
Sbjct: 200 -AAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFD 258

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
             T +K  ++WNS++ G+      +++  LF +M + G  P+ VT+ ++L  C  +  + 
Sbjct: 259 TETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVD 318

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
            G+     + R       +  +  ++++  R G + EA  +   M    +EV + SL++ 
Sbjct: 319 EGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSA 378

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
             +      A     E++K  ++P +    AVLS
Sbjct: 379 CRLHKNVEYAEIAVNELSK--LQPSNAGNYAVLS 410


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 309/602 (51%), Gaps = 47/602 (7%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY--PLPW 143
           + K +   KQ+HA  IA GL  +  ++ K+  F+     + +  F   N    +   LP+
Sbjct: 14  RCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPY 73

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
           N LI+ Y        A  VY ++       D +T+P VLKAC + + V  G  VH   + 
Sbjct: 74  NTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVK 133

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                 L+V N+L+  Y   G+                               W  A ++
Sbjct: 134 MGFLCDLYVQNSLLHFYSVCGK-------------------------------WGGAGRV 162

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACS 321
           F EM       +V++W  +  G +RTG F   + L  +M      + +VAT +  L AC 
Sbjct: 163 FDEMLVR----DVVSWTGLISGYVRTGLFDEAINLFLKMDV----VPNVATFVSVLVACG 214

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            +G L +GK +HG   +  +G    V NAL+ MY +C+ L  A  LF    ++ I++W S
Sbjct: 215 RMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTS 274

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ++SG       ++S  LF +M  SGVEP+ + + S+L  CA +  L +G+    YI R+ 
Sbjct: 275 IISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQG 334

Query: 442 M-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
           + ++ H+    +LV+MYA+ G +  A  +F+ +  R+  T+ +L+ G  + G G  ALK 
Sbjct: 335 IEWDIHI--GTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKH 392

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS-IYGIFPQLEHFACMVDLY 559
           FE M    I+P+ VT +A+L+AC HSGLV EG+  F +M S  +   P+LEH+ CM+DL 
Sbjct: 393 FELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLL 452

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
            RAGLL++A + I  MP  P   +W  LL AC+ + N  + +     LLE + ++SG YV
Sbjct: 453 CRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYV 512

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++N+YA    WD + +VR  M+D G+RK PG + ++       FLV DT++ + ++I+ 
Sbjct: 513 LLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHI 572

Query: 680 LL 681
           LL
Sbjct: 573 LL 574



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 187/413 (45%), Gaps = 42/413 (10%)

Query: 56  AFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           AF  + RI       D+   +F  ++  C K   + +G+Q+H  A+ +G   +  +   L
Sbjct: 89  AFLVYGRIVGNGFVPDMY--TFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSL 146

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           + FY+    +  A  + +   +R  + W  LIS YVR G + EA+ ++ +M    +  + 
Sbjct: 147 LHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD---VVPNV 203

Query: 176 FTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            T+ SVL ACG M  +  G+ VH  +        L V NALV MY K   +  AR+LFD+
Sbjct: 204 ATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDE 263

Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
           + +RD VSW ++IS        K++ +LF +MQ  GVE + I   ++             
Sbjct: 264 LPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSV------------- 310

Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
                                 L AC+ +GAL  G+ +     R       ++  AL+ M
Sbjct: 311 ----------------------LSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDM 348

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
           Y++C  +  A  +F     ++I TWN++L G        E+   F  M  +G+ PN VT 
Sbjct: 349 YAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTF 408

Query: 415 ASILPLCARVANLQHGKE-FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
            +IL  C     +  G+  F+  I +   F+  L  +  ++++  R+G + EA
Sbjct: 409 LAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEA 461


>gi|413918395|gb|AFW58327.1| hypothetical protein ZEAMMB73_709604 [Zea mays]
          Length = 906

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 191/634 (30%), Positives = 321/634 (50%), Gaps = 72/634 (11%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV 151
            GK++H+  +  G+E +  +   L+T Y+      +   +  + ++R  + WN +I+ YV
Sbjct: 298 HGKEVHSFVVRHGMEIDVSVSNALMTHYSKVLEMKDVESIFTSMDVRDIVSWNTIIAGYV 357

Query: 152 RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWS 208
            +G++  AL +++ + S  I  D+ ++ S+L AC ++ DV  G  VH  I       E S
Sbjct: 358 MNGYHHRALGLFQGLLSTGIAPDSVSFISLLTACAQVGDVKTGMEVHGYIFQRPVLQETS 417

Query: 209 LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           L   NALV+ Y    + D A R F  +L +D++SWN ++SA A+     E F  FV M E
Sbjct: 418 LM--NALVTFYSHCDRFDDAFRAFTDILNKDSISWNAILSACATSEQHIEKF--FVLMSE 473

Query: 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328
               VN   W+++                               TV+ +   S    +K+
Sbjct: 474 MCRGVNQCQWDSV-------------------------------TVLNVIHMSTFCGIKM 502

Query: 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTH 388
            +E HG ++R  Y    +V NA++  Y +C     A ILF+  A ++I+T N M+S Y  
Sbjct: 503 VREAHGWSLRVGYTGETSVANAILDAYVKCGYSHDASILFRNHAGRNIVTDNIMISCYLK 562

Query: 389 LDCAEESAFLFREMFRS-------------------------------GVEPNYVTIASI 417
            +C E++  +F  M                                  G++P+ V+IA+I
Sbjct: 563 SNCIEDAEVIFNHMAEKDLTSWNLMIQLYAQNDMDGQAFSLFNHLQSEGLKPDIVSIANI 622

Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
           L  C  + ++Q  ++ H Y+LR ++ + HL    +LV+ Y++ G +  A ++F +  ++D
Sbjct: 623 LEACIHLCSVQLVRQCHAYMLRASLEDIHL--EGALVDAYSKCGNITNAYNIFQISPKKD 680

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
            VT+T++I  Y + G    A++LF +M K  I+PDHV +  +LSACSH+GLV  G K F+
Sbjct: 681 LVTFTAMIGCYAMHGMAEEAVELFSKMLKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFK 740

Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRN 596
            +  I+ + P  EH+ACMVDL  R+G +  A      MP    +A  W++LLGAC++H  
Sbjct: 741 SIREIHRVVPTAEHYACMVDLLARSGHIQDAYMFALDMPPHAVNANAWSSLLGACKVHGK 800

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             IG+ AA +L      + G YV+++N+YAA   WD +  VR  M+ + ++K  GC+W++
Sbjct: 801 VEIGQLAAGRLFSMEGGDIGNYVIMSNIYAADEKWDGVENVRKLMKSIDMKKPAGCSWIE 860

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690
                  F+  D ++     IY +LG L + +KD
Sbjct: 861 VEKTRHLFIASDINHQDRSCIYDMLGSLYQQIKD 894



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 187/425 (44%), Gaps = 66/425 (15%)

Query: 180 SVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD 239
           S L  C   + V  GRV  S           V  A++  YG+FG +  A  LFD+M   D
Sbjct: 86  SALARCLHGLAVKAGRVASSAT---------VAKAVMDAYGRFGSLADALLLFDEMARPD 136

Query: 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299
           A                                   + WN +   C R G F+    L  
Sbjct: 137 A-----------------------------------VCWNILITACSRRGLFEDAFILFR 161

Query: 300 RMRT---QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
            M +    +    +V   + + AC+    L+ G+ +H   V+          NAL++MY+
Sbjct: 162 SMLSCGVGQGMPTAVTVAVIVPACAKWRHLQTGRSVHCYVVKTGLESDTLCGNALVSMYA 221

Query: 357 RCKDLR---HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           +C   R    A+  F     K +++WNS+++GY       E+  LF +M   G  PNY T
Sbjct: 222 KCGGSRVMVDAHRAFSSIRCKDVVSWNSVIAGYIENQLFGEALALFSQMISQGYLPNYST 281

Query: 414 IASILPLCARVA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           +ASILP+C+       HGKE H +++R  M  + + + N+L+  Y++  ++ + +S+F  
Sbjct: 282 VASILPVCSFTEFGRHHGKEVHSFVVRHGMEID-VSVSNALMTHYSKVLEMKDVESIFTS 340

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           M  RD V++ ++IAGY + G    AL LF+ +    I PD V+ +++L+AC+  G V  G
Sbjct: 341 MDVRDIVSWNTIIAGYVMNGYHHRALGLFQGLLSTGIAPDSVSFISLLTACAQVGDVKTG 400

Query: 533 QKQFERMTSIYG-IF--PQLEHFACM---VDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
            +       ++G IF  P L+  + M   V  Y      + A    T +     S  W  
Sbjct: 401 ME-------VHGYIFQRPVLQETSLMNALVTFYSHCDRFDDAFRAFTDI-LNKDSISWNA 452

Query: 587 LLGAC 591
           +L AC
Sbjct: 453 ILSAC 457



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 138/589 (23%), Positives = 234/589 (39%), Gaps = 112/589 (19%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS---LYNNACFLV 132
           + A I+  C K + L  G+ +H   +  GLE + +    LV+ YA      +  +A    
Sbjct: 177 TVAVIVPACAKWRHLQTGRSVHCYVVKTGLESDTLCGNALVSMYAKCGGSRVMVDAHRAF 236

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
            +   +  + WN +I+ Y+ +  + EAL ++ QM S+    +  T  S+L  C      +
Sbjct: 237 SSIRCKDVVSWNSVIAGYIENQLFGEALALFSQMISQGYLPNYSTVASILPVCSF---TE 293

Query: 193 FGR----VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
           FGR     VHS  +    E  + V NAL++ Y K  ++     +F  M  RD VSWNT+I
Sbjct: 294 FGRHHGKEVHSFVVRHGMEIDVSVSNALMTHYSKVLEMKDVESIFTSMDVRDIVSWNTII 353

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
           + Y   G    A  LF  +   G+  + +++ ++   C + G+                 
Sbjct: 354 AGYVMNGYHHRALGLFQGLLSTGIAPDSVSFISLLTACAQVGD----------------- 396

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
                             +K G E+HG   +    +  ++ NAL+T YS C     A+  
Sbjct: 397 ------------------VKTGMEVHGYIFQRPVLQETSLMNALVTFYSHCDRFDDAFRA 438

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFREMFRSGVEP---NYVTIASILPLC-- 421
           F     K  I+WN++LS     +   E  F L  EM R GV     + VT+ +++ +   
Sbjct: 439 FTDILNKDSISWNAILSACATSEQHIEKFFVLMSEMCR-GVNQCQWDSVTVLNVIHMSTF 497

Query: 422 ---------------------ARVAN------LQHGKEFHCYILRRAMFNEHLLLWNSLV 454
                                  VAN      ++ G      IL R     +++  N ++
Sbjct: 498 CGIKMVREAHGWSLRVGYTGETSVANAILDAYVKCGYSHDASILFRNHAGRNIVTDNIMI 557

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
             Y +S  + +A+ +F+ M+ +D  ++  +I  Y        A  LF  +    +KPD V
Sbjct: 558 SCYLKSNCIEDAEVIFNHMAEKDLTSWNLMIQLYAQNDMDGQAFSLFNHLQSEGLKPDIV 617

Query: 515 TMVAVLSACSH------------------------SGLVVEGQKQFERMTSIYGIF---- 546
           ++  +L AC H                         G +V+   +   +T+ Y IF    
Sbjct: 618 SIANILEACIHLCSVQLVRQCHAYMLRASLEDIHLEGALVDAYSKCGNITNAYNIFQISP 677

Query: 547 -PQLEHFACMVDLYGRAGLLNKAKEIITKM---PYTPTSAMWATLLGAC 591
              L  F  M+  Y   G+  +A E+ +KM      P   +  TLL AC
Sbjct: 678 KKDLVTFTAMIGCYAMHGMAEEAVELFSKMLKLDIRPDHVVLTTLLSAC 726



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 193/453 (42%), Gaps = 86/453 (18%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A   F  +  T  + D V  SF  ++  C +V  +  G ++H       + +   L+  
Sbjct: 364 RALGLFQGLLSTGIAPDSV--SFISLLTACAQVGDVKTGMEVHGYIFQRPVLQETSLMNA 421

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           LVTFY+    +++A     +   +  + WN ++S       + E   V      R +   
Sbjct: 422 LVTFYSHCDRFDDAFRAFTDILNKDSISWNAILSACATSEQHIEKFFVLMSEMCRGVNQC 481

Query: 175 NFTYPSVLKA------CG-EMMDVDFG-----------RVVHSCIDA------CHEWSLF 210
            +   +VL        CG +M+    G            V ++ +DA       H+ S+ 
Sbjct: 482 QWDSVTVLNVIHMSTFCGIKMVREAHGWSLRVGYTGETSVANAILDAYVKCGYSHDASIL 541

Query: 211 ----------VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAF 260
                       N ++S Y K   ++ A  +F+ M E+D  SWN MI  YA   +  +AF
Sbjct: 542 FRNHAGRNIVTDNIMISCYLKSNCIEDAEVIFNHMAEKDLTSWNLMIQLYAQNDMDGQAF 601

Query: 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
            LF  +Q EG++ +++                                 S+A +  L AC
Sbjct: 602 SLFNHLQSEGLKPDIV---------------------------------SIANI--LEAC 626

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
            H+ +++L ++ H   +R    E  ++  AL+  YS+C ++ +AY +F+++ +K ++T+ 
Sbjct: 627 IHLCSVQLVRQCHAYMLRASL-EDIHLEGALVDAYSKCGNITNAYNIFQISPKKDLVTFT 685

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG-------KEF 433
           +M+  Y     AEE+  LF +M +  + P++V + ++L  C+    +  G       +E 
Sbjct: 686 AMIGCYAMHGMAEEAVELFSKMLKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFKSIREI 745

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466
           H    R     EH   +  +V++ ARSG + +A
Sbjct: 746 H----RVVPTAEH---YACMVDLLARSGHIQDA 771



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 146/318 (45%), Gaps = 30/318 (9%)

Query: 284 GC-LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCY 341
           GC L  G+  G LEL + +R       S + + G G+        L + +HG AV+ G  
Sbjct: 57  GCMLGEGHRPGALELAAAIR-------SSSALPGSGS-------ALARCLHGLAVKAGRV 102

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V  A++  Y R   L  A +LF   A    + WN +++  +     E++  LFR 
Sbjct: 103 ASSATVAKAVMDAYGRFGSLADALLLFDEMARPDAVCWNILITACSRRGLFEDAFILFRS 162

Query: 402 MFRSGVE---PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           M   GV    P  VT+A I+P CA+  +LQ G+  HCY+++  + ++  L  N+LV MYA
Sbjct: 163 MLSCGVGQGMPTAVTVAVIVPACAKWRHLQTGRSVHCYVVKTGLESD-TLCGNALVSMYA 221

Query: 459 RSGK---VPEAKSVFDLMSRRDEVTYTSLIAGY---GIQGEGRVALKLFEEMNKNQIKPD 512
           + G    + +A   F  +  +D V++ S+IAGY    + GE   AL LF +M      P+
Sbjct: 222 KCGGSRVMVDAHRAFSSIRCKDVVSWNSVIAGYIENQLFGE---ALALFSQMISQGYLPN 278

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
           + T+ ++L  CS +       K+       +G+   +     ++  Y +   +   + I 
Sbjct: 279 YSTVASILPVCSFTEFGRHHGKEVHSFVVRHGMEIDVSVSNALMTHYSKVLEMKDVESIF 338

Query: 573 TKMPYTPTSAMWATLLGA 590
           T M      + W T++  
Sbjct: 339 TSMDVRDIVS-WNTIIAG 355


>gi|356557599|ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 184/618 (29%), Positives = 315/618 (50%), Gaps = 43/618 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K F  +G   +  + F+ + +    H  +      +I      +    G QLH  A+  
Sbjct: 23  IKSFLSKGLYHQTLQLFSELHLCG--HSSISFFLPSVIKASSSAQCHTFGTQLHCLALKT 80

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G     V+   ++T Y  FS   +A  + +    R P+ WN LI+ Y+ +G+  EAL   
Sbjct: 81  GSHSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEAL 140

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE--WSLFVHNALVSMYGK 221
             +    +        SV+  CG  M    GR +H+ +        S+F+  ALV  Y +
Sbjct: 141 NDVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFR 200

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV-NVITWNT 280
            G   +A R+FD                                    G+EV NV++W T
Sbjct: 201 CGDSLMALRVFD------------------------------------GMEVKNVVSWTT 224

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
           +  GC+   ++         M+ +    + V ++  L AC+  G +K GKEIHG A R  
Sbjct: 225 MISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIALLSACAEPGFVKHGKEIHGYAFRHG 284

Query: 341 YGEYENVRNALITMYSRCKDLRH-AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
           +    +  +AL+ MY +C +  H A ++F+ ++ + ++ W+S++  ++    + ++  LF
Sbjct: 285 FESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLF 344

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
            +M    +EPNYVT+ +++  C  +++L+HG   H YI +   F   + + N+L+ MYA+
Sbjct: 345 NKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGYIFKFG-FCFSISVGNALINMYAK 403

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  ++ +F  M  RD VT++SLI+ YG+ G G  AL++F EMN+  +KPD +T +AV
Sbjct: 404 CGCLNGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFYEMNERGVKPDAITFLAV 463

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           LSAC+H+GLV EGQ+ F+++ +   I   +EH+AC+VDL GR+G L  A EI   MP  P
Sbjct: 464 LSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYACLVDLLGRSGKLEYALEIRRTMPMKP 523

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
           ++ +W++L+ AC++H    I E  A +L+ + P N+G Y L+  +YA  G W    +VR 
Sbjct: 524 SARIWSSLVSACKLHGRLDIAEMLAPQLIRSEPNNAGNYTLLNTIYAEHGHWLDTEQVRE 583

Query: 640 CMRDLGVRKIPGCAWVDA 657
            M+   ++K  G + ++A
Sbjct: 584 AMKLQKLKKCYGFSRIEA 601


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/563 (31%), Positives = 297/563 (52%), Gaps = 19/563 (3%)

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF--TYPSVLKACGEMMDVDFGRV 196
           +P  W   I +    G +  A+ ++ QM++      +   + P+ LK+C  +        
Sbjct: 11  FPPSWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAAS 70

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H+  I +      F  NAL+++  K          F      +  S           GL
Sbjct: 71  LHALAIRSGSFADRFTANALLNLCIKLPG-------FHHPFGTNGPS--------GEGGL 115

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
              A++   ++ +E +E + ++WNT+  GC      +  L ++  M       D+     
Sbjct: 116 ESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLST 175

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L   +    +K G  +HG A++  +     V ++LI MY+ C  + ++  +F   ++  
Sbjct: 176 VLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCD 235

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
            + WNSML+GY      EE+  +FR M ++GV P  VT +S++P    ++ L+ GK+ H 
Sbjct: 236 AVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHA 295

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y++R A FN+++ + +SL++MY + G V  A+ VF+ +   D V++T++I GY + G   
Sbjct: 296 YLIR-ARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTT 354

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A  LFE M    +KP+H+T +AVL+ACSH+GLV  G K F  M++ YG  P LEH A +
Sbjct: 355 EAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAAL 414

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
            D  GRAG L++A   I++M   PTS++W+TLL AC++H+NT + E  A+K+ E  P++ 
Sbjct: 415 ADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSM 474

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G +V+++NMY+A+G W++ A++R  MR  G++K P C+W++  N    F+  D S+    
Sbjct: 475 GSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYD 534

Query: 676 EIYPLLGGLTELMKDAGYVVKEE 698
            I   L   +E M   GYV   E
Sbjct: 535 RIIDALNVYSEQMIRQGYVPNME 557



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 182/440 (41%), Gaps = 56/440 (12%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG--- 104
           A +G    A   F ++R + A    V  S    +  C  +        LHA AI  G   
Sbjct: 23  ASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFA 82

Query: 105 --LEKNPVL--VPKLVTFYASF-------------SLYNNACFLVENSNIRYPLPWNLLI 147
                N +L    KL  F+  F             + Y +   + +    R  + WN LI
Sbjct: 83  DRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLI 142

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHE 206
                   + EAL + ++M       D FT  +VL    E  D+  G VVH   I    +
Sbjct: 143 LGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFD 202

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
             +FV ++L+ MY    Q+D + ++FD   + DAV WN+M++ YA  G  +EA  +F  M
Sbjct: 203 NDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRM 262

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
            + GV    +T++++                                   + A  ++  L
Sbjct: 263 LQAGVRPVPVTFSSL-----------------------------------IPAFGNLSLL 287

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           +LGK++H   +R  + +   + ++LI MY +C ++  A  +F       I++W +M+ GY
Sbjct: 288 RLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGY 347

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                  E+  LF  M    V+PN++T  ++L  C+    + +G ++   +  +  F   
Sbjct: 348 ALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPS 407

Query: 447 LLLWNSLVEMYARSGKVPEA 466
           L    +L +   R+G + EA
Sbjct: 408 LEHCAALADTLGRAGDLDEA 427


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/645 (29%), Positives = 328/645 (50%), Gaps = 44/645 (6%)

Query: 57  FEAFTRIRITAASHDVVLDSFAHIIF---CCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
            EA+   R    S D ++   A ++     C     +  G  +H  A+ LGL    ++  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCN 352

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM--QSRRI 171
            L+  Y+     + A  L      +  + WN +I  Y R+GF  E   + ++M  +   +
Sbjct: 353 ALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELM 412

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
             +  T  ++L AC E  ++   R +H   +    ++   ++NA ++ Y K G +  A  
Sbjct: 413 EVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEH 472

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +F  M        NT                            +V +WN + GG  + G+
Sbjct: 473 VFFGM--------NTK---------------------------SVSSWNAVIGGHAQNGD 497

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
               L+    M       D  + V  L AC  +G L+ GKEIHG  +R        V  +
Sbjct: 498 PIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVS 557

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           L+++Y  C    +    F+   +K+ + WN+MLSGY+  +   E+  LFR+M   G+EP+
Sbjct: 558 LLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPD 617

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            + IASIL  C++++ L  GKE HC+ L+ ++  ++ +   SL++MYA+SG +  ++ +F
Sbjct: 618 EIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVAC-SLMDMYAKSGFLGHSQRIF 676

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           + ++ ++  ++  +I G+G+ G+G  A++LFE+M ++  +PD  T + VL AC H+GLV 
Sbjct: 677 NRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVS 736

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           EG     +M ++Y + P+LEH+AC++D+ GRAG LN+A   I +MP  P + +W++LL +
Sbjct: 737 EGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSS 796

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
              + +  +GE  AEKLL      +  Y+L++N+YA  G WD +  VR  M+DL ++K  
Sbjct: 797 SITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDV 856

Query: 651 GCAWVD-AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           GC+W++  G V+S F+  + SN  + EI  +   L + + + GY 
Sbjct: 857 GCSWIELRGKVYS-FIAGENSNPSSDEIRKMWNRLEKQIVEIGYT 900



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 178/640 (27%), Positives = 294/640 (45%), Gaps = 83/640 (12%)

Query: 35  IMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVL--DSFAHIIFCCGKVKALAQ 92
           + +++LLE +      G+L+ A +   R     A +D+    ++   ++  CG+ K +  
Sbjct: 66  VSQLSLLEEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEI 125

Query: 93  GKQL-HACAIALGLEKNPVLVPKLVTFYA--SFSLYNNACF-LVENSNIRYPLPWNLLIS 148
           G++L     ++     + VL  +L+T Y+   + L +   F  + N N+     WN L+S
Sbjct: 126 GRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNL---FQWNALVS 182

Query: 149 LYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHE 206
            YVR+  Y EA+  + ++ S    + DNFT+P ++KAC    D+  G+ VH   +     
Sbjct: 183 GYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLI 242

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
             LFV NA++++YGK G +D A  LFDKM E++ +SWN++I  ++  G W EA++ F  +
Sbjct: 243 MDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSL 302

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGA 325
            E G                                  +  +  VAT++  L  CS  G 
Sbjct: 303 LESG----------------------------------DGLIPDVATMVTLLPVCSGEGN 328

Query: 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSG 385
           + +G  IHG AV+        V NALI MYS+C  L  A ILF+    KS+++WNSM+  
Sbjct: 329 VDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGA 388

Query: 386 YTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           Y+      E+  L R+M+     +E N VTI ++LP C   + L   +  H Y LR + F
Sbjct: 389 YSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHS-F 447

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
               L+ N+ +  YA+ G +  A+ VF  M+ +   ++ ++I G+   G+   AL  + E
Sbjct: 448 QYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFE 507

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQ-------KQFERMTSIYGIFPQLEHFACMV 556
           M +  I PD  ++V++L AC   GL+  G+       +    M S   +     +F C  
Sbjct: 508 MTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSK 567

Query: 557 DLYGRA-----------------------GLLNKAKEIITKM---PYTPTSAMWATLLGA 590
             YGR                         L N+A  +  +M      P     A++LGA
Sbjct: 568 PFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGA 627

Query: 591 CQIHRNTGIG-EWAAEKLLETRPENSGYYVLIANMYAATG 629
           C      G+G E     L  +  E++     + +MYA +G
Sbjct: 628 CSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSG 667


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/552 (32%), Positives = 291/552 (52%), Gaps = 42/552 (7%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
           N L+  Y +      A  ++K+M       D+FT+ +VL A   + D+  G+ +HS  I 
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMPEI----DSFTFAAVLCANIGLDDIVLGQQIHSFVIK 238

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
               W++FV NAL+  Y K   V  AR+LFD+M E+D VS+N +IS YA  G  K AF L
Sbjct: 239 TNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDL 298

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F E+Q    +     + T+                                   L   S+
Sbjct: 299 FRELQFTAFDRKQFPFATM-----------------------------------LSIASN 323

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
               ++G++IH   +         V N+L+ MY++C     A ++F     +S + W +M
Sbjct: 324 TLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAM 383

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +S Y      EE   LF +M ++ V  +  T AS+L   A +A+L  GK+ H +I++   
Sbjct: 384 ISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSG- 442

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F  ++   ++L+++YA+ G + +A   F  M  R+ V++ ++I+ Y   GE    LK F+
Sbjct: 443 FMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFK 502

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           EM  + ++PD V+ + VLSACSHSGLV EG   F  MT IY + P+ EH+A +VD+  R+
Sbjct: 503 EMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRS 562

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP-ENSGYYVLI 621
           G  N+A++++ +MP  P   MW+++L AC+IH+N  +   AA++L       ++  YV +
Sbjct: 563 GRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNM 622

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +N+YAA G W+ ++KV   MRD GV+K+P  +WV+  +    F  +D  + Q +EI   +
Sbjct: 623 SNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKI 682

Query: 682 GGLTELMKDAGY 693
             LT+ M++ GY
Sbjct: 683 DMLTKTMEELGY 694



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 189/396 (47%), Gaps = 35/396 (8%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N ++S Y K G +  AR+LFD M+ER AV+W  +I  Y+    +KEAF+LFV+MQ  G E
Sbjct: 82  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 141

Query: 273 VNVITWNTIAGGC------------------------LRTGNF-------KGVLELLSRM 301
            + +T+ T+  GC                        L  GN           L+L  ++
Sbjct: 142 PDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQL 201

Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL 361
             +   +DS      L A   +  + LG++IH   ++  +     V NAL+  YS+   +
Sbjct: 202 FKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV 261

Query: 362 RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF-LFREMFRSGVEPNYVTIASILPL 420
             A  LF    E+  +++N ++SGY   D   + AF LFRE+  +  +      A++L +
Sbjct: 262 IDARKLFDEMPEQDGVSYNVIISGYA-WDGKHKYAFDLFRELQFTAFDRKQFPFATMLSI 320

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
            +   + + G++ H   +     +E +L+ NSLV+MYA+ GK  EA+ +F  ++ R  V 
Sbjct: 321 ASNTLDWEMGRQIHAQTIVTTADSE-ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP 379

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           +T++I+ Y  +G     L+LF +M +  +  D  T  ++L A +    +  G KQ     
Sbjct: 380 WTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG-KQLHSFI 438

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
              G    +   + ++D+Y + G +  A +   +MP
Sbjct: 439 IKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 474



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 3/244 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +A  G    AF+ F  ++ TA   D     FA ++           G+Q+HA  I    +
Sbjct: 286 YAWDGKHKYAFDLFRELQFTA--FDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTAD 343

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
              ++   LV  YA    +  A  +  N   R  +PW  +IS YV+ GFY E L ++ +M
Sbjct: 344 SEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKM 403

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
           +   +  D  T+ S+L+A   +  +  G+ +HS  I +    ++F  +AL+ +Y K G +
Sbjct: 404 RQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSI 463

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             A + F +M +R+ VSWN MISAYA  G  +   + F EM   G++ + +++  +   C
Sbjct: 464 KDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSAC 523

Query: 286 LRTG 289
             +G
Sbjct: 524 SHSG 527



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 173/380 (45%), Gaps = 46/380 (12%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N  V  + K G++  AR+LF+KM  ++ VS N MIS Y   G   EA +LF  M    VE
Sbjct: 51  NFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGM----VE 106

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
              +TW  + GG  +   FK   EL  +M+   T  D V  V  L  C+     ++G +I
Sbjct: 107 RTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCN---GHEMGNQI 163

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
                         V+  +I                K+  +  +I  N+++  Y   +  
Sbjct: 164 ------------TQVQTQII----------------KLGYDSRLIVGNTLVDSYCKSNRL 195

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVA--NLQHGKEFHCYILRRAMFNEHLLLW 450
           + +  LF+EM     E +  T A++  LCA +   ++  G++ H +++ +  F  ++ + 
Sbjct: 196 DLACQLFKEM----PEIDSFTFAAV--LCANIGLDDIVLGQQIHSFVI-KTNFVWNVFVS 248

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
           N+L++ Y++   V +A+ +FD M  +D V+Y  +I+GY   G+ + A  LF E+      
Sbjct: 249 NALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFD 308

Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
                   +LS  S++ L  E  +Q    T +     ++     +VD+Y + G   +A+ 
Sbjct: 309 RKQFPFATMLSIASNT-LDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEM 367

Query: 571 IITKMPYTPTSAMWATLLGA 590
           I T + +  ++  W  ++ A
Sbjct: 368 IFTNLTHR-SAVPWTAMISA 386



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 133/300 (44%), Gaps = 20/300 (6%)

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           N +I+ Y +  +L  A  LF    E++ +TW  ++ GY+ L+  +E+  LF +M R G E
Sbjct: 82  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 141

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P+YVT  ++L  C          +    I++   ++  L++ N+LV+ Y +S ++  A  
Sbjct: 142 PDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLG-YDSRLIVGNTLVDSYCKSNRLDLACQ 200

Query: 469 VFDLMSRRDEVTYTSLI-AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV----AVLSAC 523
           +F  M   D  T+ +++ A  G+       + L ++++   IK + V  V    A+L   
Sbjct: 201 LFKEMPEIDSFTFAAVLCANIGLDD-----IVLGQQIHSFVIKTNFVWNVFVSNALLDFY 255

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           S    V++ +K F+ M    G+      +  ++  Y   G    A ++  ++ +T     
Sbjct: 256 SKHDSVIDARKLFDEMPEQDGV-----SYNVIISGYAWDGKHKYAFDLFRELQFTAFDRK 310

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN----MYAATGCWDKLAKVRT 639
                    I  NT   E   +   +T    +   +L+ N    MYA  G +++   + T
Sbjct: 311 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFT 370



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 103/228 (45%), Gaps = 8/228 (3%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +  +G   +  + F ++R  +   D    +FA ++     + +L+ GKQLH+  I  G  
Sbjct: 387 YVQKGFYEEGLQLFNKMRQASVIADQA--TFASLLRASASIASLSLGKQLHSFIIKSGFM 444

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            N      L+  YA      +A    +    R  + WN +IS Y ++G     L  +K+M
Sbjct: 445 SNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEM 504

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQ 224
               ++ D+ ++  VL AC     V+ G    + +   ++      +  ++V M  + G+
Sbjct: 505 VLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGR 564

Query: 225 VDVARRLFDKM-LERDAVSWNTMISA---YASKGLWKEAFQLFVEMQE 268
            + A +L  +M ++ D + W+++++A   + ++ L + A      M+E
Sbjct: 565 FNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEE 612


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 191/692 (27%), Positives = 333/692 (48%), Gaps = 87/692 (12%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           + L Q +Q+HA A   G+ +N V+  KL+ FY+ +   ++A  L +   +R  + W++++
Sbjct: 92  RNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 151

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV----------- 196
             + + G Y      ++++     R DN+T P V++AC ++ ++    V           
Sbjct: 152 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIED 211

Query: 197 VHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER------------------ 238
                D   E  L     ++  Y + G+ + +  LF+KM E                   
Sbjct: 212 ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAK 271

Query: 239 ---------------------DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
                                D +    MI  YA  G  + A ++F  M+E+    NVI+
Sbjct: 272 LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK----NVIS 327

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
           W+ +       G  +  L+L   M +     D +     L AC +   L   +++H  A 
Sbjct: 328 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQA- 386

Query: 338 RGCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT----HLDC 391
              +G  +N  V N L+  YS  + L  AY LF     +  ++W+ M+ G+     +++C
Sbjct: 387 -SVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNC 445

Query: 392 ------------------------AEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
                                   A ES  LF +M   GV P+ V + +++  CA++  +
Sbjct: 446 FGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAM 505

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
              +    YI R+  F   ++L  ++++M+A+ G V  A+ +FD M  ++ ++++++IA 
Sbjct: 506 HKARTIDDYIQRKK-FQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAA 564

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547
           YG  G+GR AL LF  M ++ I P+ +T+V++L ACSH+GLV EG + F  M   Y +  
Sbjct: 565 YGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRA 624

Query: 548 QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
            ++H+ C+VDL GRAG L++A ++I  M       +W   LGAC+ H++  + E AA  L
Sbjct: 625 DVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSL 684

Query: 608 LETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
           LE +P+N G+Y+L++N+YA  G W+ +AK R  M    ++KIPG  W++  N    F V 
Sbjct: 685 LELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVG 744

Query: 668 DTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           DT++ +++EIY +L  L   ++  GYV    F
Sbjct: 745 DTTHPRSKEIYEMLKSLGNKLELVGYVPDTNF 776



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 31/280 (11%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
           G   KA + F  +  +    D +  + A +++ C   + L Q +Q+HA A   G+ +N +
Sbjct: 339 GQGRKALDLFRMMLSSGMLPDKI--TLASLLYACINCRNLTQVRQVHAQASVHGMLQNLI 396

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +  KLV FY+ +   ++A  L +   +R  + W++++  + + G Y      ++++    
Sbjct: 397 VANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCG 456

Query: 171 IRGDNFTYP----------------------------SVLKACGEMMDVDFGRVVHSCID 202
            R DN+T P                            +V+ AC ++  +   R +   I 
Sbjct: 457 ARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 516

Query: 203 -ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               +  + +  A++ M+ K G V+ AR +FD+M E++ +SW+ MI+AY   G  ++A  
Sbjct: 517 RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 576

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
           LF  M   G+  N IT  ++   C   G  +  L   S M
Sbjct: 577 LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLM 616


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 299/577 (51%), Gaps = 41/577 (7%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI-RYPLPWNLLISLYVR 152
           +++H  ++ +GL+        LV  Y        A + V N  + +  + WN +I+    
Sbjct: 132 RRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVK-ALWQVFNETVEKNEVSWNSIINGLAC 190

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFV 211
            G   +AL  ++ M     + ++ T  S+L    E+     G+ +H   +    E  +F+
Sbjct: 191 KGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFI 250

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N+L+ MY K G    A  +F  +  R+ VSWN MI+ YA   L  EA +  ++MQE G 
Sbjct: 251 ANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGE 310

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             N +T+  +                                   L AC+ +G L  GKE
Sbjct: 311 CPNAVTFTNV-----------------------------------LPACARLGFLGPGKE 335

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IH   VR        V N+LI MY++C  L  A  +F  T+ K  +++N ++ GY+  D 
Sbjct: 336 IHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDD 394

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             +S  LF EM   G +P+ V+   ++  CA +A L+ GKE H   LR  +++ HL + N
Sbjct: 395 CLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYS-HLFVSN 453

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL++ Y + G++  A  +F+ +  +D  ++ ++I GYG+ GE   A+ +FE M  + ++ 
Sbjct: 454 SLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQY 513

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D V+ +AVLSACSH GLV  G + F  M +   + P   H+ CMVDL GRAG + +A ++
Sbjct: 514 DLVSYIAVLSACSHGGLVERGWQYFSEMLA-QRLEPTEMHYTCMVDLLGRAGFVEEAAKL 572

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I ++P  P + +W  LLGAC+I+ N  +G  AAE L E +P++ GYY+L++N+YA TG W
Sbjct: 573 IQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRW 632

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           D+  K+R  M+  G +K PGC+WV   +    F+ ++
Sbjct: 633 DEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEE 669



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 255/558 (45%), Gaps = 47/558 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C     + +G ++H     LG + +  +   L+  Y +    N+A  L +  
Sbjct: 12  TFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEM 71

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF-TYPSVLKACGEMMDVDFG 194
             R  + WN +I L   +G Y EA   Y  M  R +   N  +  S+L     + D +  
Sbjct: 72  PERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMT 131

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R +H   +    +  +   NALV  YGK G V    ++F++ +E++ VSWN++I+  A K
Sbjct: 132 RRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACK 191

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G   +A   F  M + G + N +T ++I                                
Sbjct: 192 GRCWDALNAFRMMIDAGAQPNSVTISSI-------------------------------- 219

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L     +   K GKEIHG ++R        + N+LI MY++      A  +F     
Sbjct: 220 ---LPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDR 276

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           ++I++WN+M++ Y       E+     +M  +G  PN VT  ++LP CAR+  L  GKE 
Sbjct: 277 RNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEI 336

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H   +R  + ++ L + NSL++MYA+ G +  A++VF+  SR+DEV+Y  LI GY    +
Sbjct: 337 HAMGVRIGLTSD-LFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDD 394

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              +L LF EM     KPD V+ V V+SAC++   + +G K+   +     ++  L    
Sbjct: 395 CLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQG-KEVHGVALRNHLYSHLFVSN 453

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW-AAEKLLETRP 612
            ++D Y + G ++ A  +  ++ +   ++    +LG         IGE   A  + E   
Sbjct: 454 SLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGM------IGELETAISMFEAMR 507

Query: 613 ENSGYYVLIANMYAATGC 630
           +++  Y L++ +   + C
Sbjct: 508 DDTVQYDLVSYIAVLSAC 525



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 199/407 (48%), Gaps = 37/407 (9%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQ 224
           M  R ++ D+ T+P VLK C +  D+  G  VH  +     +  ++V N L+ +YG  G 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 225 VDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           ++ ARRLFD+M ERD VSWNT+I   +  G + EA   +  M    +  +VI  N ++  
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWM----ILRSVIKPNLVS-- 114

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                    V+ LL      E                     ++ + IH  +V+      
Sbjct: 115 ---------VISLLPISAALEDE-------------------EMTRRIHCYSVKVGLDSQ 146

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
               NAL+  Y +C  ++  + +F  T EK+ ++WNS+++G        ++   FR M  
Sbjct: 147 VTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMID 206

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +G +PN VTI+SILP+   +   + GKE H + +R     + + + NSL++MYA+SG   
Sbjct: 207 AGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETD-IFIANSLIDMYAKSGHST 265

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           EA ++F  + RR+ V++ ++IA Y +      A++   +M +    P+ VT   VL AC+
Sbjct: 266 EASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACA 325

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
             G +  G K+   M    G+   L     ++D+Y + G L+ A+ +
Sbjct: 326 RLGFLGPG-KEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNV 371



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 224/507 (44%), Gaps = 56/507 (11%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAAS--HDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101
           +   A +G    A  AF R+ I A +  + V + S   ++    +++    GK++H  ++
Sbjct: 185 INGLACKGRCWDALNAF-RMMIDAGAQPNSVTISSILPVLV---ELECFKAGKEIHGFSM 240

Query: 102 ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALC 161
            +G E +  +   L+  YA       A  +  N + R  + WN +I+ Y  +    EA+ 
Sbjct: 241 RMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIR 300

Query: 162 VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYG 220
              QMQ      +  T+ +VL AC  +  +  G+ +H+  +       LFV N+L+ MY 
Sbjct: 301 FVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYA 360

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G +  AR +F+    +D VS+N +I  Y+      ++  LF EM+  G + +V++   
Sbjct: 361 KCGCLHSARNVFNTS-RKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVS--- 416

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                     F GV+                       AC+++ ALK GKE+HG A+R  
Sbjct: 417 ----------FVGVIS----------------------ACANLAALKQGKEVHGVALRNH 444

Query: 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFR 400
              +  V N+L+  Y++C  +  A  LF     K + +WN+M+ GY  +   E +  +F 
Sbjct: 445 LYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFE 504

Query: 401 EMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460
            M    V+ + V+  ++L  C+    ++ G ++   +L + +     + +  +V++  R+
Sbjct: 505 AMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRL-EPTEMHYTCMVDLLGRA 563

Query: 461 GKVPE-AKSVFDLMSRRDEVTYTSLIAGYGIQGE----GRVALKLFEEMNKNQIKPDHVT 515
           G V E AK +  L    D   + +L+    I G      R A  LFE      +KP H  
Sbjct: 564 GFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFE------LKPQHCG 617

Query: 516 MVAVLSAC-SHSGLVVEGQKQFERMTS 541
              +LS   + +G   E  K  E M S
Sbjct: 618 YYILLSNIYAETGRWDEANKIRELMKS 644


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 206/620 (33%), Positives = 305/620 (49%), Gaps = 79/620 (12%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV--PKLVTFYASFSLYNNACFLVE 133
           SF   +  C  +K L   KQ+HA  I      +  L    +L    A     +    L  
Sbjct: 39  SFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSL 95

Query: 134 NSNIRYP-LP-WNLLI-SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
            + +R P LP +N +I  L   +    E L VYKQM S+ I  DN+T P VLKAC E   
Sbjct: 96  LAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRA 155

Query: 191 VDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
           V  G  VH                        GQ           L  D    NT++  Y
Sbjct: 156 VREGEEVH------------------------GQA------IKMGLASDVYVSNTLMRMY 185

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
           A   + + A ++F    +   + ++++W T+  G ++ G  +  + L   +R     LD 
Sbjct: 186 AVCDVIRSARKVF----DTSPQRDLVSWTTMIQGYVKMGFAREGVGLYI-IRNSNVNLDV 240

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                                               V NAL+ MY +C D   A  +F+ 
Sbjct: 241 F-----------------------------------VGNALVDMYLKCGDANFARKVFQE 265

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
              K++++WNSM+SG       +ES ++FR+M R GV+P+ VT+ ++L  CA +  L+ G
Sbjct: 266 MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG 325

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H Y L R        + N+LV+MYA+ G + +A  VF  M+R+D  +YT++I G  +
Sbjct: 326 KWVHAY-LDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAM 384

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G+G  AL LF EM K  I+PD VT V VL+ACSH GLV EG+K FE M++IY + PQLE
Sbjct: 385 HGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLE 444

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMVDL GRAGL+N+A+E I  MP  P + +   LLGAC+IH    +GE   +K+ + 
Sbjct: 445 HYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKI 504

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P   G YVL++N+Y++   W    K+R  M++  + K PGC+ ++   V   F   D S
Sbjct: 505 EPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKS 564

Query: 671 NVQAQEIYPLLGGLTELMKD 690
           + + +EIY LL  +   +K+
Sbjct: 565 HPKIKEIYKLLDEIMSHLKN 584



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 207/467 (44%), Gaps = 85/467 (18%)

Query: 69  SHDVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN 126
           S  +V D++    ++  C + +A+ +G+++H  AI +GL  +  +   L+  YA   +  
Sbjct: 133 SKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIR 192

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
           +A  + + S  R  + W  +I  YV+ GF  E + +Y       IR  N           
Sbjct: 193 SARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYI------IRNSNVN--------- 237

Query: 187 EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTM 246
             +DV                  FV NALV MY K G  + AR++F +M  ++ VSWN+M
Sbjct: 238 --LDV------------------FVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSM 277

Query: 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET 306
           IS  A KG +KE+  +F +MQ  GV+                                  
Sbjct: 278 ISGLAQKGQFKESLYMFRKMQRLGVKP--------------------------------- 304

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
             D V  V  L +C+++G L+LGK +H    R        + NAL+ MY++C  +  A  
Sbjct: 305 --DDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACW 362

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           +F+    K + ++ +M+ G        ++  LF EM + G+EP+ VT   +L  C+ V  
Sbjct: 363 VFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGL 422

Query: 427 LQHGKEFH-----CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVT 480
           ++ G+++       Y LR  +  EH   +  +V++  R+G + EA+     M    D   
Sbjct: 423 VEEGRKYFEDMSTIYNLRPQL--EH---YGCMVDLLGRAGLINEAEEFIRNMPIEPDAFV 477

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSH 525
             +L+    I G+  +   + +++ K + + D  +V M  + S+ + 
Sbjct: 478 LGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANR 524


>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
 gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
          Length = 733

 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 192/640 (30%), Positives = 329/640 (51%), Gaps = 44/640 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K     GN  KAF+ + ++R      +    +   I+  C ++  L +GK +H      
Sbjct: 102 IKSHFSNGNYFKAFDFYIQMRYDNTPPNQF--TIPMIVATCAELLWLEEGKYIHGLVSKS 159

Query: 104 GL-EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           GL  +N  +    V  YA   +  +A  + +   +R  + W  L+  YV +    + L  
Sbjct: 160 GLFAENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLEC 219

Query: 163 YKQMQSRRIRGD-----NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALV 216
             +M  RRI GD     + T     +ACG +  +  GR +H   +      S  V ++L+
Sbjct: 220 LCEM--RRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLL 277

Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
           SMY K G V+ A   F +++++D  SW ++I   A  G   E   LF +MQ + V  + I
Sbjct: 278 SMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGI 337

Query: 277 TWNTIAGG-----CLRTGN-FKGVLELLSRMRTQETYLDSVATVIGLGACSH-------- 322
             + I  G      +R G  F G++     +R      D+V   +    C          
Sbjct: 338 VVSCILLGFGNSMMVREGKAFHGLI-----VRRNYVLDDTVNNALLSMYCKFGTLNPAEK 392

Query: 323 --VGALKLGKE---------IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
              G  +  KE         +H   ++    E  ++ N+LI MY +  +L  A+ +F  T
Sbjct: 393 LFDGVHEWSKESWNTMVFGYVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRT 452

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            ++ ++TWN+++S YTH     E+  LF EM    + PN  T+  +L  C  + +L+ GK
Sbjct: 453 -QRDVVTWNTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGK 511

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
             H YI +   F  ++ L  +LV+MYA+ G++ +++ +F+ M  +D +++  +I+GYG+ 
Sbjct: 512 MVHQYI-KEGGFELNVSLGTALVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLH 570

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G+   A+++F++M ++ +KP+ +T +++LSAC+H+G V EG++ F+RM   Y I P L+H
Sbjct: 571 GDANSAMEVFQQMEQSNVKPNAITFLSLLSACTHAGYVDEGKQLFDRM-QYYSIKPNLKH 629

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
           FACM DL GR+G L +A++++  MP  P   +W TLL AC+IH    IG   A+  +E+ 
Sbjct: 630 FACMADLLGRSGNLQEAEDLVQSMPICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESD 689

Query: 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
           PEN GYY++++NMY + G WD+  + R  M++ G+ K  G
Sbjct: 690 PENDGYYIMLSNMYGSMGKWDEAERARELMKERGIGKRAG 729



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 135/572 (23%), Positives = 241/572 (42%), Gaps = 97/572 (16%)

Query: 82  FCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL 141
           F   + + L    + HA  I  G   N  +  KL++ YASF   +++ ++ +++N +   
Sbjct: 37  FLSNQTQTLQSLHKSHALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTF 96

Query: 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201
            WN +I  +  +G Y +A   Y QM+      + FT P ++  C E++ ++ G+ +H  +
Sbjct: 97  LWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLV 156

Query: 202 DACHEWSLFVHNA-----LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
                  LF  N+      V MY K G ++ A  +FD+++ RD VSW  ++  Y      
Sbjct: 157 SKS---GLFAENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDS 213

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           ++  +   EM+  G +   +   T+ GG                                
Sbjct: 214 EKGLECLCEMRRIGGDGEKVNSRTLEGG-------------------------------- 241

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
             AC ++GA+  G+ +HG AV+   G  + V+++L++MYS+C ++  A+  F    +K +
Sbjct: 242 FQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDV 301

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
            +W S++          E   LF +M    V P+ + ++ IL        ++ GK FH  
Sbjct: 302 FSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGL 361

Query: 437 ILRR-----AMFNEHLL-------------------------LWN--------------- 451
           I+RR        N  LL                          WN               
Sbjct: 362 IVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNS 421

Query: 452 ---------SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
                    SL++MY + G +  A  +F   ++RD VT+ +LI+ Y   G    A+ LF+
Sbjct: 422 VDEDVSIANSLIDMYGKGGNLSIAWKMF-CRTQRDVVTWNTLISSYTHSGHYAEAITLFD 480

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           EM   ++ P+  T+V VLSAC H   + +G K   +     G    +     +VD+Y + 
Sbjct: 481 EMISEKLNPNSATLVIVLSACCHLPSLEKG-KMVHQYIKEGGFELNVSLGTALVDMYAKC 539

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           G L +++E+   M      + W  ++    +H
Sbjct: 540 GQLEQSRELFNSMKEKDVIS-WNVMISGYGLH 570


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/533 (31%), Positives = 291/533 (54%), Gaps = 42/533 (7%)

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
            ++   I  D   Y ++LK C     +  GR+VH+ I  +     + + N L++MY K G
Sbjct: 50  DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            ++ AR++F+KM +RD V+W T+IS Y+      +A   F +M   G   N  T +++  
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI- 168

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                       A     G C H        ++HG  V+  +  
Sbjct: 169 --------------------------KAAAAERRGCCGH--------QLHGFCVKCGFDS 194

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             +V +AL+ +Y+R   +  A ++F     ++ ++WN++++G+      E++  LF+ M 
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW--NSLVEMYARSG 461
           R G  P++ + AS+   C+    L+ GK  H Y+++     E L+ +  N+L++MYA+SG
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG---EKLVAFAGNTLLDMYAKSG 311

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + +A+ +FD +++RD V++ SL+  Y   G G+ A+  FEEM +  I+P+ ++ ++VL+
Sbjct: 312 SIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLT 371

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSHSGL+ EG   +E M    GI P+  H+  +VDL GRAG LN+A   I +MP  PT+
Sbjct: 372 ACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTA 430

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           A+W  LL AC++H+NT +G +AAE + E  P++ G +V++ N+YA+ G W+  A+VR  M
Sbjct: 431 AIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKM 490

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           ++ GV+K P C+WV+  N    F+ +D  + Q +EI      +   +K+ GYV
Sbjct: 491 KESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYV 543



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 202/493 (40%), Gaps = 73/493 (14%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C   K L QG+ +HA  +      + V+   L+  YA       A  + E    R  + W
Sbjct: 70  CTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTW 129

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
             LIS Y +     +AL  + QM       + FT  SV+KA         G  +H  C+ 
Sbjct: 130 TTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK 189

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              + ++ V +AL+ +Y ++G +D A+ +FD +  R+ VSWN +I+ +A +   ++A +L
Sbjct: 190 CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALEL 249

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M  +G                R  +F                  S A++ G  ACS 
Sbjct: 250 FQGMLRDG---------------FRPSHF------------------SYASLFG--ACSS 274

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            G L+ GK +H   ++          N L+ MY++   +  A  +F   A++ +++WNS+
Sbjct: 275 TGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSL 334

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           L+ Y      +E+ + F EM R G+ PN ++  S+L  C+    L  G  +H Y      
Sbjct: 335 LTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG--WHYY------ 386

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
                       E+  + G VPEA              Y +++   G  G+   AL+  E
Sbjct: 387 ------------ELMKKDGIVPEA------------WHYVTVVDLLGRAGDLNRALRFIE 422

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           EM    I+P      A+L+AC        G    E +  +    P       + ++Y   
Sbjct: 423 EM---PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPH--VILYNIYASG 477

Query: 563 GLLNKAKEIITKM 575
           G  N A  +  KM
Sbjct: 478 GRWNDAARVRKKM 490



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 11/217 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S+A +   C     L QGK +HA  I  G +        L+  YA     ++A  + +  
Sbjct: 264 SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 323

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN L++ Y + GF  EA+  +++M+   IR +  ++ SVL AC     +D G 
Sbjct: 324 AKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGW 383

Query: 196 VVHSCID----ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
             +  +         W       +V + G+ G ++ A R  ++M +E  A  W  +++A 
Sbjct: 384 HYYELMKKDGIVPEAWHYVT---VVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNAC 440

Query: 250 --YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
             + +  L   A +   E+  +    +VI +N  A G
Sbjct: 441 RMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASG 477


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 172/524 (32%), Positives = 287/524 (54%), Gaps = 42/524 (8%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           D   Y ++LK C     +  GR+VH   I +     L ++N L++MY K G ++ AR++F
Sbjct: 50  DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVF 109

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           DKM ERD V+W T+IS Y+      +A  LF +M   G   N  T +++           
Sbjct: 110 DKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVI---------- 159

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                              A     G C H        ++HG  V+  +    +V +AL+
Sbjct: 160 -----------------KAAAAERRGCCGH--------QLHGFCVKCGFDSNVHVGSALL 194

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            +Y+R   +  A ++F     ++ ++WN++++G+      E++  LF+ M R G  P++ 
Sbjct: 195 DLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHF 254

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW--NSLVEMYARSGKVPEAKSVF 470
           + AS+   C+    L+ GK  H Y+++     E L+ +  N+L++MYA+SG + +A+ +F
Sbjct: 255 SYASLFGACSSTGFLEQGKWVHAYMIKSG---EKLVAFAGNTLLDMYAKSGSIHDARKIF 311

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           D +++RD V++ SL+  Y   G G  A+  FEEM +  I+P+ ++ ++VL+ACSHSGL+ 
Sbjct: 312 DRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLD 371

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           EG   +E M    GI  +  H+  +VDL GRAG LN+A   I +MP  PT+A+W  LL A
Sbjct: 372 EGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNA 430

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           C++H+NT +G +AAE + E  P++ G +V++ N+YA+ G W+  A+VR  M++ GV+K P
Sbjct: 431 CRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEP 490

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            C+WV+  N    F+ +D  + Q +EI      +   +K+ GYV
Sbjct: 491 ACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYV 534



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 199/493 (40%), Gaps = 73/493 (14%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C   K L QG+ +H   I      + V+   L+  YA       A  + +    R  + W
Sbjct: 61  CTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTW 120

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
             LIS Y +     +AL ++ QM       + FT  SV+KA         G  +H  C+ 
Sbjct: 121 TTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK 180

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              + ++ V +AL+ +Y ++G +D A+ +FD +  R+ VSWN +I+ +A +   ++A +L
Sbjct: 181 CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALEL 240

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M  EG                R  +F                  S A++ G  ACS 
Sbjct: 241 FQGMLREG---------------FRPSHF------------------SYASLFG--ACSS 265

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            G L+ GK +H   ++          N L+ MY++   +  A  +F   A++ +++WNS+
Sbjct: 266 TGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSL 325

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           L+ Y       E+   F EM R G+ PN ++  S+L  C+    L  G  +H Y      
Sbjct: 326 LTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEG--WHYY------ 377

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
                       E+  + G V EA              Y +++   G  G+   AL+  E
Sbjct: 378 ------------ELMKKDGIVLEA------------WHYVTIVDLLGRAGDLNRALRFIE 413

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           EM    I+P      A+L+AC        G    E +  +    P       + ++Y   
Sbjct: 414 EM---PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPH--VILYNIYASG 468

Query: 563 GLLNKAKEIITKM 575
           G  N A  +  KM
Sbjct: 469 GRWNDAARVRKKM 481



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 11/217 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S+A +   C     L QGK +HA  I  G +        L+  YA     ++A  + +  
Sbjct: 255 SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 314

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN L++ Y + GF  EA+C +++M+   IR +  ++ SVL AC     +D G 
Sbjct: 315 AKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGW 374

Query: 196 VVHSCID----ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
             +  +         W       +V + G+ G ++ A R  ++M +E  A  W  +++A 
Sbjct: 375 HYYELMKKDGIVLEAWHYVT---IVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNAC 431

Query: 250 --YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
             + +  L   A +   E+  +    +VI +N  A G
Sbjct: 432 RMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASG 468


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 179/637 (28%), Positives = 332/637 (52%), Gaps = 44/637 (6%)

Query: 76   SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
            +F  ++  C  + +L  G+Q+H   I   ++ +  +   ++  Y+     + A  L    
Sbjct: 430  TFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLI 489

Query: 136  NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
              +  + WN LI     +    EA+ + K+M+   I  D  ++ + + AC  +   + G+
Sbjct: 490  PGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGK 549

Query: 196  VVHSC---IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
             +H      + C   +  V ++L+ +Y KFG V+ +R++   +     V  N +I+    
Sbjct: 550  QIHCASIKYNVCSNHA--VGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQ 607

Query: 253  KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                 EA +LF ++ ++G + +  T+ +I  GC  TG                     V+
Sbjct: 608  NNREDEAIELFQQVLKDGFKPSNFTFASILSGC--TG--------------------PVS 645

Query: 313  TVIGLGACSHVGALKLGKEIHGSAVRGCY-GEYENVRNALITMYSRCKDLRHA-YILFKM 370
            +VIG             K++H   ++     +  ++  +L+ +Y +CK L  A  +L ++
Sbjct: 646  SVIG-------------KQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEV 692

Query: 371  TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
               K+++ W + +SGY     +++S  +F  M    V  +  T AS+L  C+ +A L  G
Sbjct: 693  PDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDG 752

Query: 431  KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGYG 489
            KE H  I++   F  +    ++L++MY++ G V  +  +F +L ++++ + + S+I G+ 
Sbjct: 753  KEIHGLIIKSG-FVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFA 811

Query: 490  IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
              G    AL LF++M ++Q+KPD VT++ VL ACSH+GL+ EG+  F+ M+ +YGI P++
Sbjct: 812  KNGYANEALLLFQKMQESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRV 871

Query: 550  EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
            +H+AC++DL GR G L +A+E+I ++P+     +WAT L ACQ+H++   G+ AA+KL+E
Sbjct: 872  DHYACLIDLLGRGGHLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEERGKVAAKKLVE 931

Query: 610  TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
              P+ S  YV +++++AA G W +    R  MR+ GV K PGC+W+  GN  + F+V DT
Sbjct: 932  MEPQRSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGNKTNLFVVQDT 991

Query: 670  SNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIV 706
             +     IY +L  LT +M     + + +  S  E++
Sbjct: 992  HHPDTLGIYKMLDDLTGMMNKDDRIEEYDLRSLSEML 1028



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/515 (25%), Positives = 245/515 (47%), Gaps = 38/515 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++     + A  +G+Q+HA A+  GL+ N  +   L+  Y      ++A  + + S
Sbjct: 329 TFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFS 388

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN ++  +V++    E + +++ M+   +  D+FT+ SVL AC  +  +D GR
Sbjct: 389 TEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGR 448

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   I    +  LFV NA++ MY K G +DVA+ LF  +  +D+VSWN +I   A   
Sbjct: 449 QVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHN- 507

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                     E +EE V                         +L RM+      D V+  
Sbjct: 508 ----------EEEEEAV------------------------YMLKRMKCYGIAPDEVSFA 533

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + ACS++ A + GK+IH ++++        V ++LI +YS+  D+  +  +       
Sbjct: 534 TAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDAS 593

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           S++  N++++G    +  +E+  LF+++ + G +P+  T ASIL  C    +   GK+ H
Sbjct: 594 SMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVH 653

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGYGIQGE 493
            Y L+ A+ N+   L  SLV +Y +   + +A  +  ++   ++ V +T+ I+GY   G 
Sbjct: 654 SYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGY 713

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              +L +F  M  + ++ D  T  +VL ACS    + +G K+   +    G        +
Sbjct: 714 SDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDG-KEIHGLIIKSGFVSYETAAS 772

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
            ++D+Y + G +  + EI  ++        W +++
Sbjct: 773 ALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMI 807



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 228/484 (47%), Gaps = 37/484 (7%)

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRG--DNFTYPSVLKACGEMMDVDFGRVVH-SCID 202
           ++S + R G   + L  +++++   I G  D F    VL AC  +  ++ GR VH   + 
Sbjct: 130 VLSCHARSGSPRDVLDAFQRLRCS-IGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLK 188

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           +    S F    LV MY K  +V  ARR+FD +   D + W +MI+ Y   G +++A  L
Sbjct: 189 SGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALAL 248

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET---------YLDS--V 311
           F  M++ G   + +T+ TI       G       LL R++   T         Y  S   
Sbjct: 249 FSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLE 308

Query: 312 ATVIGL--------------------GACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
           + V GL                     A + + A   G++IH +AV+        V ++L
Sbjct: 309 SEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSL 368

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           I +Y +   +  A  +F  + EK+I+ WN+ML G+   D  EE+  +F+ M R+ +E + 
Sbjct: 369 INLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADD 428

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
            T  S+L  C  + +L  G++ HC  ++ +M +  L + N++++MY++ G +  AK++F 
Sbjct: 429 FTFVSVLGACINLDSLDIGRQVHCITIKNSM-DADLFVANAMLDMYSKLGAIDVAKALFS 487

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
           L+  +D V++ +LI G     E   A+ + + M    I PD V+    ++ACS+     E
Sbjct: 488 LIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNI-RATE 546

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
             KQ    +  Y +       + ++DLY + G +  +++++  +  +    + A + G  
Sbjct: 547 TGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLV 606

Query: 592 QIHR 595
           Q +R
Sbjct: 607 QNNR 610



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 230/493 (46%), Gaps = 40/493 (8%)

Query: 103 LGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
           +G   + V    +++  AS    ++A  L++   +   + WN +IS Y + G  +E   +
Sbjct: 255 MGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGL 314

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVSMYGK 221
           YK M+ + +     T+ S+L A   M   D G+ +H+  +    + ++FV ++L+++Y K
Sbjct: 315 YKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVK 374

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +  A+++FD   E++ V WN M+  +              ++QEE            
Sbjct: 375 HGCISDAKKVFDFSTEKNIVMWNAMLYGFVQN-----------DLQEE------------ 411

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
                        +++   MR  +   D    V  LGAC ++ +L +G+++H   ++   
Sbjct: 412 ------------TIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSM 459

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V NA++ MYS+   +  A  LF +   K  ++WN+++ G  H +  EE+ ++ + 
Sbjct: 460 DADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKR 519

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M   G+ P+ V+ A+ +  C+ +   + GK+ HC  ++  + + H  + +SL+++Y++ G
Sbjct: 520 MKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNH-AVGSSLIDLYSKFG 578

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            V  ++ V   +     V   +LI G         A++LF+++ K+  KP + T  ++LS
Sbjct: 579 DVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILS 638

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPYTPT 580
            C+     V G KQ    T    +  Q       +V +Y +  LL  A +++ ++P    
Sbjct: 639 GCTGPVSSVIG-KQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKN 697

Query: 581 SAMW-ATLLGACQ 592
              W AT+ G  Q
Sbjct: 698 LVEWTATISGYAQ 710


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 193/611 (31%), Positives = 312/611 (51%), Gaps = 60/611 (9%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N +    LV+ Y +  + N A  + +    R  + W  ++  YV++G  +EA  ++ Q
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC--IDACHEWSLFVHNALVSMYGKFG 223
           M  + +         +L+          GR+  +C   D   E  +     ++  Y + G
Sbjct: 217 MPEKNVVSWTVMLGGLLQE---------GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++  AR LFD+M  R+ VSW TMI+ Y        A +LF  M E+    N ++W  +  
Sbjct: 268 RLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLK 323

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G    G      EL + M         + +V+   AC                       
Sbjct: 324 GYTNCGRLDEASELFNAM--------PIKSVV---AC----------------------- 349

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
                NA+I  + +  ++  A  +F    EK   TW++M+  Y       ++  LFR M 
Sbjct: 350 -----NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           R G+ PN+ ++ S+L +CA +ANL HG+E H  ++R + F+  + + + L+ MY + G +
Sbjct: 405 REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVR-SQFDLDVYVASVLLSMYIKCGNL 463

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +AK VFD  + +D V + S+I GY   G G  AL++F +M+ + I PD VT V VLSAC
Sbjct: 464 AKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSAC 523

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           S++G V +G + F  M + Y +  ++EH+ACMVDL GRAG LN+A ++I KMP    + +
Sbjct: 524 SYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAII 583

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W  LLGAC+ H    + E AA+KLL   P+N+G ++L++N+YA+ G WD +A++R  MRD
Sbjct: 584 WGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRD 643

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTS-NVQAQEIYPLLGGLTELMKDAGYVVKEEF--- 699
             V K PGC+W+        F   D+S + +  EI  +L  L+ L+++AGY   + F   
Sbjct: 644 RRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLH 703

Query: 700 -CSEEEIVEEI 709
              EEE V+ +
Sbjct: 704 DVDEEEKVQSL 714



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 202/454 (44%), Gaps = 67/454 (14%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N LI+ Y R G   +A  V+ +M+ + I     ++ S++            +   +  D 
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNI----ISWNSIVAG---YFQNKRPQEAQNMFDK 154

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             E +    N LVS Y   G ++ AR +FD+M ER+ VSW  M+  Y  +G+  EA  LF
Sbjct: 155 MSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLF 214

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            +M E+    NV++W  + GG L+ G       L   M  +    D V     +G    V
Sbjct: 215 WQMPEK----NVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYCQV 266

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           G L   + +     R     +      +IT Y + + +  A  LF++  EK+ ++W +ML
Sbjct: 267 GRLVEARMLFDEMPRRNVVSW----TTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
            GYT+    +E++ LF  M                P+ + VA         C        
Sbjct: 323 KGYTNCGRLDEASELFNAM----------------PIKSVVA---------C-------- 349

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
                  N+++  + ++G+VP+A+ VFD M  +DE T++++I  Y  +G    AL+LF  
Sbjct: 350 -------NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRM 402

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQK---QFERMTSIYGIFPQLEHFACMVDLYG 560
           M +  I+P+  ++++VLS C+    +  G++   Q  R      ++      + ++ +Y 
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVA----SVLLSMYI 458

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           + G L KAK++  +        MW +++     H
Sbjct: 459 KCGNLAKAKQVFDRFAVKDV-VMWNSIITGYAQH 491



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 182/405 (44%), Gaps = 54/405 (13%)

Query: 90  LAQGKQLHACAI-ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           L +G+   AC +  +  EK+ V    ++  Y        A  L +    R  + W  +I+
Sbjct: 233 LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMIT 292

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA---CGEMMDVD--FGRVVHSCIDA 203
            YV++     A  +++ M  +    +  ++ ++LK    CG + +    F  +    + A
Sbjct: 293 GYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
           C        NA++  +G+ G+V  AR++FD+M E+D  +W+ MI  Y  KGL  +A +LF
Sbjct: 349 C--------NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELF 400

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
             MQ EG+                  NF  ++ +LS                    C+ +
Sbjct: 401 RMMQREGIR----------------PNFPSLISVLS-------------------VCAGL 425

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L  G+EIH   VR  +     V + L++MY +C +L  A  +F   A K ++ WNS++
Sbjct: 426 ANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSII 485

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           +GY       E+  +F +M  SG+ P+ VT   +L  C+   N++ G E    +  +   
Sbjct: 486 TGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQV 545

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
            + +  +  +V++  R+GK+ EA  + + M    D + + +L+  
Sbjct: 546 EQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGA 590



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 124/295 (42%), Gaps = 55/295 (18%)

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
           RN+LIT YSR   +  A ++F    +K+II+WNS+++GY      +E+  +F +M     
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----S 156

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           E N ++                                    WN LV  Y  +G + EA+
Sbjct: 157 ERNTIS------------------------------------WNGLVSGYINNGMINEAR 180

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            VFD M  R+ V++T+++ GY  +G    A  LF +M +  +    V+   +L      G
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQEG 236

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            + E  + F+ M         +     M+  Y + G L +A+ +  +MP     + W T+
Sbjct: 237 RIDEACRLFDMMPE-----KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVS-WTTM 290

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPE-NSGYYVLIANMYAATGCWDKLAKVRTCM 641
           +     ++   I    A KL E  PE N   +  +   Y   G  D+ +++   M
Sbjct: 291 ITGYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 104/211 (49%), Gaps = 14/211 (6%)

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G  F   +L R   +  ++  NSL+  Y+R G++ +A+ VFD M  ++ +++ S++AGY 
Sbjct: 81  GLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYF 140

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
                + A  +F++M++     + ++   ++S   ++G++ E ++ F+RM         +
Sbjct: 141 QNKRPQEAQNMFDKMSER----NTISWNGLVSGYINNGMINEAREVFDRMPE-----RNV 191

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC----QIHRNTGIGEWAAE 605
             +  MV  Y + G++++A+ +  +MP     + W  +LG      +I     + +   E
Sbjct: 192 VSWTAMVRGYVKEGMISEAETLFWQMPEKNVVS-WTVMLGGLLQEGRIDEACRLFDMMPE 250

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           K + TR    G Y  +  +  A   +D++ +
Sbjct: 251 KDVVTRTNMIGGYCQVGRLVEARMLFDEMPR 281



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S   ++  C  +  L  G+++HA  +    + +  +   L++ Y        A  + +  
Sbjct: 414 SLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            ++  + WN +I+ Y + G   EAL V+  M    I  D+ T+  VL AC    +V  G 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL 533

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            + + ++  +  E  +  +  +V + G+ G+++ A  L +KM +E DA+ W  ++ A
Sbjct: 534 EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGA 590


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 190/634 (29%), Positives = 314/634 (49%), Gaps = 46/634 (7%)

Query: 71  DVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA 128
           D+ LD  +F++ +  CG+   L  G+ +HA     GL    +L   L+  Y      + A
Sbjct: 36  DLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWA 95

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             + E+++    + WN LI+ YVR G   E L +  +M    +  +++   S LKACG  
Sbjct: 96  RLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSN 155

Query: 189 MD--VDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
               ++ G+++H C +    +  + V  AL+  Y K G ++ A ++F  M + + V +N 
Sbjct: 156 FSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNA 215

Query: 246 MISAY-----ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
           MI+ +      +     EA  LF EMQ  G++ +  T+++I                   
Sbjct: 216 MIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSI------------------- 256

Query: 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
                           L ACS + A + GK+IH    +      E + NAL+ +YS    
Sbjct: 257 ----------------LKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 300

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           +      F  T +  +++W S++ G+      E    LF E+  SG +P+  TI+ +L  
Sbjct: 301 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 360

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           CA +A ++ G++ H Y ++  + N   ++ NS + MYA+ G +  A   F      D V+
Sbjct: 361 CANLAAVKSGEQIHAYAIKTGIGN-FTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVS 419

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           ++ +I+     G  + A+ LFE M  + I P+H+T + VL ACSH GLV EG + FE M 
Sbjct: 420 WSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMK 479

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
             +GI P ++H AC+VDL GRAG L +A+  I    +     MW +LL AC++H+ T  G
Sbjct: 480 KDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTG 539

Query: 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           +  AE+++E  PE +  YVL+ N+Y   G      ++R  M+D GV+K PG +W++ GNV
Sbjct: 540 KRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNV 599

Query: 661 FSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
              F+  D S+  +Q IY  L  + E +K   Y+
Sbjct: 600 VHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI 633



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 225/467 (48%), Gaps = 50/467 (10%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + WN LIS Y + GFY E + ++K+ +   +R D FT+ + L  CG  +D+  GR++
Sbjct: 4   RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLI 63

Query: 198 HSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H+ I        + + N+L+ MY K G++D AR +F+   E D+VSWN++I+ Y   G  
Sbjct: 64  HALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSN 123

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
            E  +L V+M   G+ +N     +    C    NF   +E                    
Sbjct: 124 DEMLRLLVKMLRHGLNLNSYALGSALKAC--GSNFSSSIE-------------------- 161

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
                       GK +HG AV+        V  AL+  Y++  DL  A  +FK+  + ++
Sbjct: 162 -----------CGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNV 210

Query: 377 ITWNSMLSGYTHLDC-----AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           + +N+M++G+  ++      A E+ +LF EM   G++P+  T +SIL  C+ +   + GK
Sbjct: 211 VMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGK 270

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  I +  + ++   + N+LVE+Y+ SG + +    F    + D V++TSLI G+   
Sbjct: 271 QIHAQIFKYNLQSDE-FIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQN 329

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G+    L LF E+  +  KPD  T+  +LSAC++   V  G++        Y I   + +
Sbjct: 330 GQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQ-----IHAYAIKTGIGN 384

Query: 552 FACMVD----LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           F  + +    +Y + G ++ A  +  K    P    W+ ++ +   H
Sbjct: 385 FTIIQNSQICMYAKCGDIDSAN-MTFKETKNPDIVSWSVMISSNAQH 430



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 4/236 (1%)

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           ++++++WNS++SGYT +    E   LF+E   S +  +  T ++ L +C R  +L+ G+ 
Sbjct: 3   KRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRL 62

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H  I    +    +LL NSL++MY + G++  A+ VF+     D V++ SLIAGY   G
Sbjct: 63  IHALITVSGLGGP-VLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIG 121

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSAC-SHSGLVVEGQKQFERMTSIYGIFPQLEH 551
                L+L  +M ++ +  +   + + L AC S+    +E  K         G+   +  
Sbjct: 122 SNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVV 181

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKL 607
              ++D Y + G L  A +I   MP  P   M+  ++ A  +   T   E+A E +
Sbjct: 182 GTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMI-AGFLQMETMADEFANEAM 235


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/499 (32%), Positives = 282/499 (56%), Gaps = 44/499 (8%)

Query: 203 ACH--------EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ACH        E  + + N L++ Y K G V++AR++FD MLER  VSWNTMI  Y    
Sbjct: 74  ACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNR 133

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           +  EA  +F+EM+ EG + +  T +++   C       GV                    
Sbjct: 134 MESEALDIFLEMRNEGFKFSEFTISSVLSAC-------GV-------------------- 166

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
                  +  AL+  K++H  +V+ C      V  AL+ +Y++C  ++ A  +F+   +K
Sbjct: 167 -------NCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDK 218

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           S +TW+SM++GY      EE+  L+R   R  +E N  T++S++  C+ +A L  GK+ H
Sbjct: 219 SSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMH 278

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             I +   F  ++ + +S V+MYA+ G + E+  +F  +  ++   + ++I+G+      
Sbjct: 279 AVICKSG-FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARP 337

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           +  + LFE+M ++ + P+ VT  ++LS C H+GLV EG++ F+ M + YG+ P + H++C
Sbjct: 338 KEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSC 397

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVD+ GRAGLL++A E+I  +P+ PT+++W +LL +C++++N  + E AAEKL E  PEN
Sbjct: 398 MVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN 457

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
           +G +VL++N+YAA   W+++AK R  +RD  V+K+ G +W+D  +    F V ++ + + 
Sbjct: 458 AGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRI 517

Query: 675 QEIYPLLGGLTELMKDAGY 693
           +EI   L  L    +  GY
Sbjct: 518 REICSTLDNLVIKFRKFGY 536



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 188/388 (48%), Gaps = 36/388 (9%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           I+  C +  A+ + K  H   I + LE +  L+  L+  Y+       A  + +    R 
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN +I LY R+   +EAL ++ +M++   +   FT  SVL ACG   D    + +H 
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 178

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +  C + +L+V  AL+ +Y K G +  A ++F+ M ++ +V+W++M++ Y     ++E
Sbjct: 179 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 238

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
           A  L+   Q   +E N  T +++                                   + 
Sbjct: 239 ALLLYRRAQRMSLEQNQFTLSSV-----------------------------------IC 263

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           ACS++ AL  GK++H    +  +G    V ++ + MY++C  LR +YI+F    EK++  
Sbjct: 264 ACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLEL 323

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN+++SG+      +E   LF +M + G+ PN VT +S+L +C     ++ G+ F   + 
Sbjct: 324 WNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMR 383

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEA 466
                + +++ ++ +V++  R+G + EA
Sbjct: 384 TTYGLSPNVVHYSCMVDILGRAGLLSEA 411



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 129/256 (50%), Gaps = 12/256 (4%)

Query: 60  FTRIRITAASHDVVLD-----------SFAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108
           +TR R+ + + D+ L+           + + ++  CG      + K+LH  ++   ++ N
Sbjct: 129 YTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLN 188

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             +   L+  YA   +  +A  + E+   +  + W+ +++ YV++  Y EAL +Y++ Q 
Sbjct: 189 LYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQR 248

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDV 227
             +  + FT  SV+ AC  +  +  G+ +H+ I  +    ++FV ++ V MY K G +  
Sbjct: 249 MSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRE 308

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           +  +F ++ E++   WNT+IS +A     KE   LF +MQ++G+  N +T++++   C  
Sbjct: 309 SYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGH 368

Query: 288 TGNFKGVLELLSRMRT 303
           TG  +        MRT
Sbjct: 369 TGLVEEGRRFFKLMRT 384



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 3/187 (1%)

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           N   +  IL LCAR   +   K  H  I+R  +  +  LL N L+  Y++ G V  A+ V
Sbjct: 52  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLL-NVLINAYSKCGFVELARQV 110

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           FD M  R  V++ ++I  Y        AL +F EM     K    T+ +VLSAC  +   
Sbjct: 111 FDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDA 170

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
           +E  K+   ++    I   L     ++DLY + G++  A ++   M    +S  W++++ 
Sbjct: 171 LEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVA 228

Query: 590 ACQIHRN 596
               ++N
Sbjct: 229 GYVQNKN 235


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 203/615 (33%), Positives = 301/615 (48%), Gaps = 47/615 (7%)

Query: 86  KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF--SLYNNACFLVENSNIRYPLPW 143
           K   L   KQ+HA  +   L  N ++V K   F       ++    FL +        P 
Sbjct: 18  KCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLGKHITDVHYPCNFLKQFDWSLSSFPC 77

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           NLLIS Y        A+ +Y+         D +T+P+VLK+C +   +   R  HS    
Sbjct: 78  NLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVK 137

Query: 204 CHEW-SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              W  ++V N LV +Y   G    A ++F+ ML RD VSW  +IS              
Sbjct: 138 TGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLIS-------------- 183

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACS 321
                                G ++TG F   + L  RM  +     +V T +  LGAC 
Sbjct: 184 ---------------------GYVKTGLFNEAISLFLRMNVEP----NVGTFVSILGACG 218

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
            +G L LGK IHG   +  YGE   V NA++ MY +C  +  A  +F    EK II+W S
Sbjct: 219 KLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTS 278

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI-LRR 440
           M+ G        ES  LF +M  SG EP+ V + S+L  CA +  L  G+  H YI   R
Sbjct: 279 MIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHR 338

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
             ++ H+    +LV+MYA+ G +  A+ +F+ M  ++  T+ + I G  I G G+ ALK 
Sbjct: 339 IKWDVHI--GTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQ 396

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS-IYGIFPQLEHFACMVDLY 559
           FE++ ++  +P+ VT +AV +AC H+GLV EG+K F  MTS +Y + P LEH+ CMVDL 
Sbjct: 397 FEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLL 456

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
            RAGL+ +A E+I  MP  P   +   LL +   + N G  +   + L     ++SG YV
Sbjct: 457 CRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEMLKSLPNVEFQDSGIYV 516

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++N+YA    W ++  VR  M+  G+ K PG + +    +   FLV D S+ Q++EIY 
Sbjct: 517 LLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSIIRVDGMSHEFLVGDNSHPQSEEIYV 576

Query: 680 LLGGLTELMKDAGYV 694
           LL  L   +   G++
Sbjct: 577 LLNILANQIYLEGHI 591



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 181/410 (44%), Gaps = 48/410 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C K   + + +Q H+ ++  GL  +  +   LV  Y+       A  + E+ 
Sbjct: 111 TFPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDM 170

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R  + W  LIS YV+ G + EA+ ++ +M      G   T+ S+L ACG++  ++ G+
Sbjct: 171 LVRDVVSWTGLISGYVKTGLFNEAISLFLRMNVEPNVG---TFVSILGACGKLGRLNLGK 227

Query: 196 VVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  +  C +   L V NA++ MY K   V  AR++FD+M E+D +SW +MI       
Sbjct: 228 GIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQ 287

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +E+  LF +MQ  G E + +   ++   C   G       LL   R    Y+D     
Sbjct: 288 SPRESLDLFSQMQASGFEPDGVILTSVLSACASLG-------LLDCGRWVHEYID----- 335

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
                       ++  ++H             +   L+ MY++C  +  A  +F     K
Sbjct: 336 ----------CHRIKWDVH-------------IGTTLVDMYAKCGCIDMAQRIFNGMPSK 372

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           +I TWN+ + G       +E+   F ++  SG  PN VT  ++   C     +  G+++ 
Sbjct: 373 NIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYF 432

Query: 435 CYILRRAMFN-----EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV 479
              +   ++N     EH   +  +V++  R+G V EA  +   M    +V
Sbjct: 433 NE-MTSPLYNLSPCLEH---YGCMVDLLCRAGLVGEAVELIKTMPMPPDV 478



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 8/248 (3%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +   G  ++A   F R+ +        + +F  I+  CGK+  L  GK +H      
Sbjct: 182 ISGYVKTGLFNEAISLFLRMNVEPN-----VGTFVSILGACGKLGRLNLGKGIHGLVFKC 236

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
              +  V+   ++  Y       +A  + +    +  + W  +I   V+     E+L ++
Sbjct: 237 LYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLF 296

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGK 221
            QMQ+     D     SVL AC  +  +D GR VH  ID CH  +W + +   LV MY K
Sbjct: 297 SQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYID-CHRIKWDVHIGTTLVDMYAK 355

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G +D+A+R+F+ M  ++  +WN  I   A  G  KEA + F ++ E G   N +T+  +
Sbjct: 356 CGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAV 415

Query: 282 AGGCLRTG 289
              C   G
Sbjct: 416 FTACCHNG 423


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/533 (32%), Positives = 292/533 (54%), Gaps = 42/533 (7%)

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFG 223
            ++   I  D   Y ++LK C     +  GR+VH+ I  +     + + N L++MY K G
Sbjct: 50  DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            ++ AR++F+KM +RD V+W T+IS Y+      +A   F +M   G   N  T      
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT------ 163

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                                      +++VI   A    G    G ++HG  V+  +  
Sbjct: 164 ---------------------------LSSVIKAAAAERRGCC--GHQLHGFCVKCGFDS 194

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
             +V +AL+ +Y+R   +  A ++F     ++ ++WN++++G+      E++  LF+ M 
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW--NSLVEMYARSG 461
           R G  P++ + AS+   C+    L+ GK  H Y+++     E L+ +  N+L++MYA+SG
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG---EKLVAFAGNTLLDMYAKSG 311

Query: 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
            + +A+ +FD +++RD V++ SL+  Y   G G+ A+  FEEM +  I+P+ ++ ++VL+
Sbjct: 312 SIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLT 371

Query: 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
           ACSHSGL+ EG   +E M    GI P+  H+  +VDL GRAG LN+A   I +MP  PT+
Sbjct: 372 ACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTA 430

Query: 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641
           A+W  LL AC++H+NT +G +AAE + E  P++ G +V++ N+YA+ G W+  A+VR  M
Sbjct: 431 AIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKM 490

Query: 642 RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           ++ GV+K P C+WV+  N    F+ +D  + Q +EI      +   +K+ GYV
Sbjct: 491 KESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYV 543



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 202/493 (40%), Gaps = 73/493 (14%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C   K L QG+ +HA  +      + V+   L+  YA       A  + E    R  + W
Sbjct: 70  CTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTW 129

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
             LIS Y +     +AL  + QM       + FT  SV+KA         G  +H  C+ 
Sbjct: 130 TTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK 189

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              + ++ V +AL+ +Y ++G +D A+ +FD +  R+ VSWN +I+ +A +   ++A +L
Sbjct: 190 CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALEL 249

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M  +G                R  +F                  S A++ G  ACS 
Sbjct: 250 FQGMLRDG---------------FRPSHF------------------SYASLFG--ACSS 274

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            G L+ GK +H   ++          N L+ MY++   +  A  +F   A++ +++WNS+
Sbjct: 275 TGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSL 334

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           L+ Y      +E+ + F EM R G+ PN ++  S+L  C+    L  G  +H Y      
Sbjct: 335 LTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG--WHYY------ 386

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
                       E+  + G VPEA              Y +++   G  G+   AL+  E
Sbjct: 387 ------------ELMKKDGIVPEA------------WHYVTVVDLLGRAGDLNRALRFIE 422

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           EM    I+P      A+L+AC        G    E +  +    P       + ++Y   
Sbjct: 423 EM---PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPH--VILYNIYASG 477

Query: 563 GLLNKAKEIITKM 575
           G  N A  +  KM
Sbjct: 478 GRWNDAARVRKKM 490



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 11/217 (5%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S+A +   C     L QGK +HA  I  G +        L+  YA     ++A  + +  
Sbjct: 264 SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 323

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN L++ Y + GF  EA+  +++M+   IR +  ++ SVL AC     +D G 
Sbjct: 324 AKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGW 383

Query: 196 VVHSCID----ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA- 249
             +  +         W       +V + G+ G ++ A R  ++M +E  A  W  +++A 
Sbjct: 384 HYYELMKKDGIVPEAWHYVT---VVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNAC 440

Query: 250 --YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
             + +  L   A +   E+  +    +VI +N  A G
Sbjct: 441 RMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASG 477


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 193/611 (31%), Positives = 312/611 (51%), Gaps = 60/611 (9%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N +    LV+ Y +  + N A  + +    R  + W  ++  YV++G  +EA  ++ Q
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC--IDACHEWSLFVHNALVSMYGKFG 223
           M  + +         +L+          GR+  +C   D   E  +     ++  Y + G
Sbjct: 217 MPEKNVVSWTVMLGGLLQE---------GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           ++  AR LFD+M  R+ VSW TMI+ Y        A +LF  M E+    N ++W  +  
Sbjct: 268 RLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLK 323

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G    G      EL + M         + +V+   AC                       
Sbjct: 324 GYTNCGRLDEASELFNAM--------PIKSVV---AC----------------------- 349

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
                NA+I  + +  ++  A  +F    EK   TW++M+  Y       ++  LFR M 
Sbjct: 350 -----NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           R G+ PN+ ++ S+L +CA +ANL HG+E H  ++R + F+  + + + L+ MY + G +
Sbjct: 405 REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVR-SQFDLDVYVASVLLSMYIKCGNL 463

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
            +AK VFD  + +D V + S+I GY   G G  AL++F +M+ + I PD VT V VLSAC
Sbjct: 464 AKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSAC 523

Query: 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAM 583
           S++G V +G + F  M + Y +  ++EH+ACMVDL GRAG LN+A ++I KMP    + +
Sbjct: 524 SYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAII 583

Query: 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643
           W  LLGAC+ H    + E AA+KLL   P+N+G ++L++N+YA+ G WD +A++R  MRD
Sbjct: 584 WGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRD 643

Query: 644 LGVRKIPGCAWVDAGNVFSPFLVDDTS-NVQAQEIYPLLGGLTELMKDAGYVVKEEF--- 699
             V K PGC+W+        F   D+S + +  EI  +L  L+ L+++AGY   + F   
Sbjct: 644 RRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLH 703

Query: 700 -CSEEEIVEEI 709
              EEE V+ +
Sbjct: 704 DVDEEEKVQSL 714



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 202/454 (44%), Gaps = 67/454 (14%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N LI+ Y R G   +A  V+ +M+ + I     ++ S++            +   +  D 
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNI----ISWNSIVAG---YFQNKRPQEAQNMFDK 154

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
             E +    N LVS Y   G ++ AR +FD+M ER+ VSW  M+  Y  +G+  EA  LF
Sbjct: 155 MSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLF 214

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
            +M E+    NV++W  + GG L+ G       L   M  +    D V     +G    V
Sbjct: 215 WQMPEK----NVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYCQV 266

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
           G L   + +     R     +      +IT Y + + +  A  LF++  EK+ ++W +ML
Sbjct: 267 GRLVEARMLFDEMPRRNVVSW----TTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
            GYT+    +E++ LF  M                P+ + VA         C        
Sbjct: 323 KGYTNCGRLDEASELFNAM----------------PIKSVVA---------C-------- 349

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
                  N+++  + ++G+VP+A+ VFD M  +DE T++++I  Y  +G    AL+LF  
Sbjct: 350 -------NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRM 402

Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQK---QFERMTSIYGIFPQLEHFACMVDLYG 560
           M +  I+P+  ++++VLS C+    +  G++   Q  R      ++      + ++ +Y 
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVA----SVLLSMYI 458

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           + G L KAK++  +        MW +++     H
Sbjct: 459 KCGNLAKAKQVFDRFAVKDV-VMWNSIITGYAQH 491



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 182/405 (44%), Gaps = 54/405 (13%)

Query: 90  LAQGKQLHACAI-ALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           L +G+   AC +  +  EK+ V    ++  Y        A  L +    R  + W  +I+
Sbjct: 233 LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMIT 292

Query: 149 LYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA---CGEMMDVD--FGRVVHSCIDA 203
            YV++     A  +++ M  +    +  ++ ++LK    CG + +    F  +    + A
Sbjct: 293 GYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
           C        NA++  +G+ G+V  AR++FD+M E+D  +W+ MI  Y  KGL  +A +LF
Sbjct: 349 C--------NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELF 400

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
             MQ EG+                  NF  ++ +LS                    C+ +
Sbjct: 401 RMMQREGIR----------------PNFPSLISVLS-------------------VCAGL 425

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
             L  G+EIH   VR  +     V + L++MY +C +L  A  +F   A K ++ WNS++
Sbjct: 426 ANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSII 485

Query: 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF 443
           +GY       E+  +F +M  SG+ P+ VT   +L  C+   N++ G E    +  +   
Sbjct: 486 TGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQV 545

Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG 487
            + +  +  +V++  R+GK+ EA  + + M    D + + +L+  
Sbjct: 546 EQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGA 590



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 124/295 (42%), Gaps = 55/295 (18%)

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
           RN+LIT YSR   +  A ++F    +K+II+WNS+++GY      +E+  +F +M     
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----S 156

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
           E N ++                                    WN LV  Y  +G + EA+
Sbjct: 157 ERNTIS------------------------------------WNGLVSGYINNGMINEAR 180

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            VFD M  R+ V++T+++ GY  +G    A  LF +M +  +    V+   +L      G
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQEG 236

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            + E  + F+ M         +     M+  Y + G L +A+ +  +MP     + W T+
Sbjct: 237 RIDEACRLFDMMPE-----KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVS-WTTM 290

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPE-NSGYYVLIANMYAATGCWDKLAKVRTCM 641
           +     ++   I    A KL E  PE N   +  +   Y   G  D+ +++   M
Sbjct: 291 ITGYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 104/211 (49%), Gaps = 14/211 (6%)

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G  F   +L R   +  ++  NSL+  Y+R G++ +A+ VFD M  ++ +++ S++AGY 
Sbjct: 81  GLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYF 140

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
                + A  +F++M++     + ++   ++S   ++G++ E ++ F+RM         +
Sbjct: 141 QNKRPQEAQNMFDKMSER----NTISWNGLVSGYINNGMINEAREVFDRMPE-----RNV 191

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC----QIHRNTGIGEWAAE 605
             +  MV  Y + G++++A+ +  +MP     + W  +LG      +I     + +   E
Sbjct: 192 VSWTAMVRGYVKEGMISEAETLFWQMPEKNVVS-WTVMLGGLLQEGRIDEACRLFDMMPE 250

Query: 606 KLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           K + TR    G Y  +  +  A   +D++ +
Sbjct: 251 KDVVTRTNMIGGYCQVGRLVEARMLFDEMPR 281



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S   ++  C  +  L  G+++HA  +    + +  +   L++ Y        A  + +  
Sbjct: 414 SLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            ++  + WN +I+ Y + G   EAL V+  M    I  D+ T+  VL AC    +V  G 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL 533

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            + + ++  +  E  +  +  +V + G+ G+++ A  L +KM +E DA+ W  ++ A
Sbjct: 534 EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGA 590


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 180/618 (29%), Positives = 318/618 (51%), Gaps = 42/618 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  + +   G+Q+    I   ++ +  +    +  ++ F   ++A  L    
Sbjct: 303 TYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLI 362

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN L+     +    EA+ + K M    +  D  ++ +V+ AC  +   + G+
Sbjct: 363 TYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGK 422

Query: 196 VVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            +H C+   H    +  V ++L+  Y K G V+  R++  ++     V  N +I+     
Sbjct: 423 QIH-CLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQN 481

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
               EA  LF ++  +G++ +  T+++I  GC  TG       LLS +            
Sbjct: 482 NREDEAIDLFQQVLRDGLKPSSFTFSSILSGC--TG-------LLSSI------------ 520

Query: 314 VIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHA-YILFKMT 371
                         +GK++H   ++ G   +  +V  +L+  Y + +    A  +L +M 
Sbjct: 521 --------------IGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMP 566

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             K+++ W +++SGY     + +S   F  M    V P+ VT ASIL  C+ +  L  GK
Sbjct: 567 DHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGK 626

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGYGI 490
           E H  I++   F  +    +++++MY++ G +  +   F +L S++D   + S+I G+  
Sbjct: 627 EIHGLIIKSG-FGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAK 685

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G    AL LF++M  +QIK D VT + VL AC+H+GL+ EG+  F+ M+ +YGI P+++
Sbjct: 686 NGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVD 745

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+AC +DL GR G L +A+E+I ++P+ P   +WAT L AC++H++   GE AA++L+E 
Sbjct: 746 HYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEERGEIAAKELVEL 805

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P+NS  YVL++NMYAA G W +    R  MR+ G  K PGC+W+  GN  S FLV D +
Sbjct: 806 EPQNSSTYVLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWITVGNKTSLFLVQDKN 865

Query: 671 NVQAQEIYPLLGGLTELM 688
           ++ A  IY +L  LT +M
Sbjct: 866 HLGALRIYEMLDNLTRMM 883



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/516 (25%), Positives = 241/516 (46%), Gaps = 40/516 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++       A  +G+Q+HA A+  GL+ N  +   L+  YA      +A  + + S
Sbjct: 202 TFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCS 261

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +++  VR+ +  EA+ ++  M+   +  D FTY SVL AC  +     GR
Sbjct: 262 GEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGR 321

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            V    I  C + SLFV NA + M+ KFG +D A+ LF+ +  +D VSWN ++       
Sbjct: 322 QVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNE 381

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA  +   M  +GV  + +++ T+                                 
Sbjct: 382 EDEEAIHMLKGMNLDGVTPDEVSFATV--------------------------------- 408

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + ACS++ A + GK+IH  A++        V ++LI  YS+  D+     +       
Sbjct: 409 --INACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDAS 466

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           SI+  N +++G    +  +E+  LF+++ R G++P+  T +SIL  C  + +   GK+ H
Sbjct: 467 SIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVH 526

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEA--KSVFDLMSRRDEVTYTSLIAGYGIQG 492
           CY L+    N+   +  SLV  Y ++ ++PE   K + ++   ++ V +T++++GY   G
Sbjct: 527 CYTLKSGFLNDDTSVGVSLVGTYLKA-RMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNG 585

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
               +L  F  M    + PD VT  ++L ACS    + +G K+   +    G        
Sbjct: 586 YSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDG-KEIHGLIIKSGFGSYKTAT 644

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           + ++D+Y + G +  + E   ++       +W +++
Sbjct: 645 SAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMI 680



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 212/459 (46%), Gaps = 36/459 (7%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVAR 229
           +R D F   + L AC  +  +  G+  H   +     S  F   ALV+MY + G+V  AR
Sbjct: 27  VRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDAR 86

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+F  +   D V W +MIS Y   G ++EA  LF  M++ G   + +T   +       G
Sbjct: 87  RVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALG 146

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIG--------------------------------- 316
             +    LL RM    + +   A + G                                 
Sbjct: 147 RLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASM 206

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L A ++  A   G+++H +AVR        V ++LI +Y++C  +  A ++F  + EK++
Sbjct: 207 LSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNV 266

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           + WN+ML+G    +   E+  +F  M R G+E +  T  S+L  CA + +   G++  C 
Sbjct: 267 VMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCV 326

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
            ++  M +  L + N+ ++M+++ G + +AK++F+L++ +D V++ +L+ G     E   
Sbjct: 327 TIKNCM-DASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEE 385

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           A+ + + MN + + PD V+   V++ACS+     E  KQ   +   + I       + ++
Sbjct: 386 AIHMLKGMNLDGVTPDEVSFATVINACSNI-RATETGKQIHCLAMKHSICSNHAVGSSLI 444

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           D Y + G +   ++++ ++  +        + G  Q +R
Sbjct: 445 DFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNR 483



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           GV P+   +A+ L  C+R+  L  GK+ HC   +R +         +LV MYAR G+V +
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGL-GSGAFCAAALVNMYARCGRVGD 84

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ VF  +S  D V + S+I+GY   G  + A+ LF  M K    PD VT VAV+ A + 
Sbjct: 85  ARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTA 144

Query: 526 SGLVVEGQKQFERM 539
            G + + +    RM
Sbjct: 145 LGRLEDARTLLHRM 158



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 35/231 (15%)

Query: 39  NLLE---TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLD--SFAHIIFCCGKVKALAQG 93
           NL+E    +  +A  G   ++  +F R+R    S+DV  D  +FA I+  C ++ AL+ G
Sbjct: 570 NLVEWTAIVSGYAQNGYSYQSLLSFWRMR----SYDVHPDEVTFASILKACSEMTALSDG 625

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYA-------SFSLYNNACFLVENSNIRYPLPWNLL 146
           K++H   I  G          ++  Y+       SF  +     L    +I     WN +
Sbjct: 626 KEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKE---LKSKQDITL---WNSM 679

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR-------VVHS 199
           I  + ++G+  EAL ++++MQ  +I+ D  T+  VL AC     +  GR        V+ 
Sbjct: 680 ILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYG 739

Query: 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISA 249
            +     ++ F     + + G+ G +  A+ + +++  R D V W T ++A
Sbjct: 740 IMPRVDHYACF-----IDLLGRGGHLQEAQEVINELPFRPDGVIWATYLAA 785


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 195/607 (32%), Positives = 305/607 (50%), Gaps = 44/607 (7%)

Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           L   LV  Y+   L N+A  ++  +N R  + W  LIS  V +  +  AL  +  M+   
Sbjct: 45  LCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRREC 104

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
           +  ++FT+P V KA   +     G+ +H               AL    G    V V   
Sbjct: 105 VLPNDFTFPCVFKASASLHMPVTGKQLH---------------ALALKGGNILDVFVGCS 149

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
            FD                Y+  GL  EA  +F EM       N+ TWN      ++ G 
Sbjct: 150 AFD---------------MYSKTGLRPEARNMFDEMPHR----NLATWNAYMSNAVQDGR 190

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
               +    +    +   +++     L AC+ + +L+LG+++HG  VR  Y E  +V N 
Sbjct: 191 CLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNG 250

Query: 351 LITMYSRCKDLRHAYILFKM--TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           LI  Y +C D+  + ++F    +  +++++W S+L+        E +  +F +  R  VE
Sbjct: 251 LIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQA-RKEVE 309

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           P    I+S+L  CA +  L+ G+  H   L+ A   E++ + ++LV++Y + G +  A+ 
Sbjct: 310 PTDFMISSVLSACAELGGLELGRSVHALALK-ACVEENIFVGSALVDLYGKCGSIEYAEQ 368

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ--IKPDHVTMVAVLSACSHS 526
           VF  M  R+ VT+ ++I GY   G+  +AL LF+EM      I   +VT+V+VLSACS +
Sbjct: 369 VFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRA 428

Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
           G V  G + FE M   YGI P  EH+AC+VDL GR+GL+++A E I +MP  PT ++W  
Sbjct: 429 GAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGA 488

Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
           LLGAC++H  T +G+ AAEKL E  P++SG +V+ +NM A+ G W++   VR  MRD+G+
Sbjct: 489 LLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGI 548

Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC----SE 702
           +K  G +WV   N    F   D+ + +  EI  +L  L   MK AGYV           E
Sbjct: 549 KKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEE 608

Query: 703 EEIVEEI 709
           EE   E+
Sbjct: 609 EEKASEV 615



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS--LYNNACFLVE 133
           +F   +  C  + +L  G+QLH   +     ++  +   L+ FY      + +   F   
Sbjct: 212 TFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRI 271

Query: 134 NSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
            S  R  + W  L++  V++     A  V+ Q + + +   +F   SVL AC E+  ++ 
Sbjct: 272 GSGRRNVVSWCSLLAALVQNHEEERACMVFLQAR-KEVEPTDFMISSVLSACAELGGLEL 330

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR VH+  + AC E ++FV +ALV +YGK G ++ A ++F +M ER+ V+WN MI  YA 
Sbjct: 331 GRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAH 390

Query: 253 KGLWKEAFQLFVEMQEE--GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            G    A  LF EM     G+ ++ +T  ++   C R G  +  L++   MR +
Sbjct: 391 LGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGR 444



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 9/170 (5%)

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G+  H +ILR         L N LV MY++      A+ V  L + R  VT+TSLI+G  
Sbjct: 26  GRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCV 85

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT----SIYGI 545
                  AL  F  M +  + P+  T   V  A +   + V G KQ   +     +I  +
Sbjct: 86  HNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTG-KQLHALALKGGNILDV 144

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F     F    D+Y + GL  +A+ +  +MP+   +   A +  A Q  R
Sbjct: 145 FVGCSAF----DMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGR 190



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 11/236 (4%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +A   F + R      D ++ S   ++  C ++  L  G+ +HA A+   +E+N  +   
Sbjct: 296 RACMVFLQARKEVEPTDFMISS---VLSACAELGGLELGRSVHALALKACVEENIFVGSA 352

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR--IR 172
           LV  Y        A  +      R  + WN +I  Y   G    AL ++++M S    I 
Sbjct: 353 LVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIA 412

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARR 230
               T  SVL AC     V+ G  +   +   +  E     +  +V + G+ G VD A  
Sbjct: 413 LSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYE 472

Query: 231 LFDKMLERDAVS-WNTMISAYASKG---LWKEAFQLFVEMQEEGVEVNVITWNTIA 282
              +M     +S W  ++ A    G   L K A +   E+  +    +V+  N +A
Sbjct: 473 FIKRMPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLA 528


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  306 bits (783), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 299/577 (51%), Gaps = 41/577 (7%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI-RYPLPWNLLISLYVR 152
           +++H  ++ +GL+        LV  Y        A + V N  + +  + WN +I+    
Sbjct: 281 RRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVK-ALWQVFNETVEKNEVSWNSIINGLAC 339

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFV 211
            G   +AL  ++ M     + ++ T  S+L    E+     G+ +H   +    E  +F+
Sbjct: 340 KGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFI 399

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N+L+ MY K G    A  +F  +  R+ VSWN MI+ YA   L  EA +  ++MQE G 
Sbjct: 400 ANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGE 459

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             N +T+  +                                   L AC+ +G L  GKE
Sbjct: 460 CPNAVTFTNV-----------------------------------LPACARLGFLGPGKE 484

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           IH   VR        V N+LI MY++C  L  A  +F  T+ K  +++N ++ GY+  D 
Sbjct: 485 IHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDD 543

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
             +S  LF EM   G +P+ V+   ++  CA +A L+ GKE H   LR  +++ HL + N
Sbjct: 544 CLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYS-HLFVSN 602

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
           SL++ Y + G++  A  +F+ +  +D  ++ ++I GYG+ GE   A+ +FE M  + ++ 
Sbjct: 603 SLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQY 662

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571
           D V+ +AVLSACSH GLV  G + F  M +   + P   H+ CMVDL GRAG + +A ++
Sbjct: 663 DLVSYIAVLSACSHGGLVERGWQYFSEMLA-QRLEPTEMHYTCMVDLLGRAGFVEEAAKL 721

Query: 572 ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCW 631
           I ++P  P + +W  LLGAC+I+ N  +G  AAE L E +P++ GYY+L++N+YA TG W
Sbjct: 722 IQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRW 781

Query: 632 DKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           D+  K+R  M+  G +K PGC+WV   +    F+ ++
Sbjct: 782 DEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEE 818



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 146/498 (29%), Positives = 238/498 (47%), Gaps = 51/498 (10%)

Query: 84  CGKVKALAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENS--NIRYP 140
           C KV++L Q KQ+HA  I  G L ++  L   L+  YA F    + C L   +  N R  
Sbjct: 64  CSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRTA 123

Query: 141 LPWNLLISLY------VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
             WN LI  +        DGF       Y +M  R ++ D+ T+P VLK C +  D+  G
Sbjct: 124 FLWNTLIRAHSIAWNGTFDGFET-----YNRMVRRGVQLDDHTFPFVLKLCSDSFDICKG 178

Query: 195 RVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
             VH  +     +  ++V N L+ +YG  G ++ ARRLFD+M ERD VSWNT+I   +  
Sbjct: 179 MEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVN 238

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G + EA   +  M    +  +VI  N ++           V+ LL      E        
Sbjct: 239 GDYTEARNYYFWM----ILRSVIKPNLVS-----------VISLLPISAALEDE------ 277

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                        ++ + IH  +V+          NAL+  Y +C  ++  + +F  T E
Sbjct: 278 -------------EMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVE 324

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           K+ ++WNS+++G        ++   FR M  +G +PN VTI+SILP+   +   + GKE 
Sbjct: 325 KNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEI 384

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H + +R     + + + NSL++MYA+SG   EA ++F  + RR+ V++ ++IA Y +   
Sbjct: 385 HGFSMRMGTETD-IFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRL 443

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
              A++   +M +    P+ VT   VL AC+  G +  G K+   M    G+   L    
Sbjct: 444 PLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPG-KEIHAMGVRIGLTSDLFVSN 502

Query: 554 CMVDLYGRAGLLNKAKEI 571
            ++D+Y + G L+ A+ +
Sbjct: 503 SLIDMYAKCGCLHSARNV 520



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 2/230 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F +++  C ++  L  GK++HA  + +GL  +  +   L+  YA     ++A   V N+
Sbjct: 465 TFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSA-RNVFNT 523

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + +N+LI  Y       ++L ++ +M+    + D  ++  V+ AC  +  +  G+
Sbjct: 524 SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGK 583

Query: 196 VVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH      H +S LFV N+L+  Y K G++D+A RLF+++L +D  SWNTMI  Y   G
Sbjct: 584 EVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIG 643

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
             + A  +F  M+++ V+ +++++  +   C   G  +   +  S M  Q
Sbjct: 644 ELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQ 693



 Score = 45.4 bits (106), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 18/193 (9%)

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
           Y+ I ++L LC++V +L   K+ H   +        + L  SL+  YA+        S+F
Sbjct: 55  YIHI-NLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLF 113

Query: 471 D--LMSRRDEVTYTSLIAGYGIQGEGRV-ALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
           +    + R    + +LI  + I   G     + +  M +  ++ D  T   VL  CS S 
Sbjct: 114 NQTFQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSF 173

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFA------CMVDLYGRAGLLNKAKEIITKMPYTPTS 581
            + +G +       ++G+  +L           ++ LYG  G LN A+ +  +MP     
Sbjct: 174 DICKGME-------VHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVV 226

Query: 582 AMWATLLGACQIH 594
           + W T++G   ++
Sbjct: 227 S-WNTIIGLLSVN 238


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  306 bits (783), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 186/588 (31%), Positives = 299/588 (50%), Gaps = 76/588 (12%)

Query: 114 KLVTFYASFSLYNNACFLVENSNI-----RYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
           KL+  YA+ S    A  ++E+S+         + +N+LI        + +AL ++  M+ 
Sbjct: 55  KLIQAYAACSALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRP 114

Query: 169 R--RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQV 225
           R      D++TYP  LK+C    D+  G  +HS +     + +++V ++ +SMY + G+ 
Sbjct: 115 RGPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRP 174

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           + A R+FD M  R                                   +V++WN +  G 
Sbjct: 175 EDAYRVFDGMPHR-----------------------------------DVVSWNAMIAGF 199

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
            R G F   +E+  +    +  +    T+ G+     + A+   K               
Sbjct: 200 ARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGI-----LPAMGNAKP-------------- 240

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
                         D+R    +F     K +I+WN+ML+ Y + +   ++  LF  M + 
Sbjct: 241 -------------DDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKD 287

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            VEP+ +T+A++LP C  ++    GK  H  I++R     +LLL N+L++MYA  G + +
Sbjct: 288 EVEPDSITLATVLPPCGELSAFSVGKRIH-EIIKRKNMCPNLLLENALMDMYASCGCLKD 346

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+ +FDLMS RD +++TS+I+ YG  G GR A+ LFE+M    ++PD +  VAVL+ACSH
Sbjct: 347 AREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSH 406

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
           +GL+ +G+  F+ MTS Y I P+ EH+ CMVDL GRAG +N+A + IT M   P   +W 
Sbjct: 407 AGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWG 466

Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
            LL AC+IH N  IG  AA+ L    PE +GYYVL++NMYA  G W  +  VR+ M + G
Sbjct: 467 ALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKG 526

Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           ++K PG + V+ G+    F + D  + Q++ IY  L  L   ++  GY
Sbjct: 527 IKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGY 574



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 140/325 (43%), Gaps = 30/325 (9%)

Query: 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA-----EKS 375
           +H   L L    H SA       + NV+  LI  Y+ C  L  A+ + + ++       +
Sbjct: 34  AHARLLVLLHPSHPSAA------HANVK--LIQAYAACSALPLAHTVLESSSPDGRSRTT 85

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVE--PNYVTIASILPLCARVANLQHGKEF 433
            + +N ++   T      ++  LF  M   G    P++ T    L  C+   +L  G + 
Sbjct: 86  TVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQI 145

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H  + +  + + ++ + +S + MY+R G+  +A  VFD M  RD V++ ++IAG+   G 
Sbjct: 146 HSAVAKLRL-DRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGL 204

Query: 494 GRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
              A+++F++    Q   PD  TM  +L A    G       +F R       F +L  +
Sbjct: 205 FDRAIEVFKQFVVLQGSMPDAGTMAGILPAM---GNAKPDDIRFVRRVFDNMQFKELISW 261

Query: 553 ACMVDLYGRAGLLNKAKE---IITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
             M+ +Y       KA E   ++ K    P S   AT+L  C       +G+   E +  
Sbjct: 262 NAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEII-- 319

Query: 610 TRPENSGYYVLIAN----MYAATGC 630
            + +N    +L+ N    MYA+ GC
Sbjct: 320 -KRKNMCPNLLLENALMDMYASCGC 343


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  306 bits (783), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 178/584 (30%), Positives = 283/584 (48%), Gaps = 69/584 (11%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID- 202
           N L+  + R       L +Y  ++      D F++P +LKA  ++  ++ G  +H     
Sbjct: 84  NQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASK 143

Query: 203 -ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
                   F+ +AL++MY   G++  AR LFDKM  RD                      
Sbjct: 144 FGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRD---------------------- 181

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
                        V+TWN +  G  +  ++  VL+L   M+T  T  D++     L AC+
Sbjct: 182 -------------VVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACA 228

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL-------------------- 361
           H G L  GK IH       +    +++ +L+ MY+ C  +                    
Sbjct: 229 HAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTA 288

Query: 362 -----------RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
                      + A  +F    EK ++ W++M+SGY       E+  LF EM R  + P+
Sbjct: 289 MLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPD 348

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            +T+ S++  CA V  L   K  H Y  +   F   L + N+L++MYA+ G + +A+ VF
Sbjct: 349 QITMLSVISACANVGALVQAKWIHTYADKNG-FGRTLPINNALIDMYAKCGNLVKAREVF 407

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
           + M R++ ++++S+I  + + G+   A+ LF  M +  I+P+ VT + VL ACSH+GLV 
Sbjct: 408 ENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVE 467

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           EGQK F  M + + I PQ EH+ CMVDLY RA  L KA E+I  MP+ P   +W +L+ A
Sbjct: 468 EGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSA 527

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           CQ H    +GE+AA +LLE  P++ G  V+++N+YA    WD +  VR  M+  GV K  
Sbjct: 528 CQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEK 587

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
            C+ ++  N    F++ D  + Q+ EIY  L  +   +K  GY 
Sbjct: 588 ACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYT 631



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 3/178 (1%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I  C  V AL Q K +H  A   G  +   +   L+  YA       A  + EN   + 
Sbjct: 355 VISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKN 414

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W+ +I+ +   G    A+ ++ +M+ + I  +  T+  VL AC     V+ G+   S
Sbjct: 415 VISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFS 474

Query: 200 CIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKG 254
            +   H  S     +  +V +Y +   +  A  L + M    + + W +++SA  + G
Sbjct: 475 SMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHG 532


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  306 bits (783), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 201/691 (29%), Positives = 340/691 (49%), Gaps = 52/691 (7%)

Query: 3   PSSSRLILNGL--SVSQLEKFIP-KKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEA 59
           P++S  + N L  +  +L   +P ++    +   + +  NLL  +  ++  G    + E 
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLL--IDAYSREGLAPLSLET 96

Query: 60  FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
             R R   A  DV   S+A  +  C +   L  G+ +HA AI  GL     +   LV+ Y
Sbjct: 97  LARAR--RAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMY 154

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYP 179
           +       A  + + +  R  + WN L+S YVR G   E + V+  M+   +  ++F   
Sbjct: 155 SKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALG 214

Query: 180 SVLKACGEMMD--VDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           SV+K C    D  +D    VH C I A  +  +F+ +A++ MY K G +  A  LF  + 
Sbjct: 215 SVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ 274

Query: 237 ERDAVSWNTMISAYA------SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           E + V +NTMI+ +        K +  EA  L+ E+Q  G++    T++++         
Sbjct: 275 EPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSV--------- 325

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
                                     L AC+  G L+ GK+IHG  ++  + E + + +A
Sbjct: 326 --------------------------LRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSA 359

Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
           LI +Y     +   +  F+ + +  I+TW +M+SG    +  E++  LF E   +G++P+
Sbjct: 360 LIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPD 419

Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
             TI+S++  CA +A  + G++  C+  +   F+   ++ NS V MYARSG V  A   F
Sbjct: 420 LFTISSVMNACASLAVARAGEQIQCFATKSG-FDRFTVMGNSCVHMYARSGDVDAATRRF 478

Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
             M   D V+++++I+ +   G  R AL  F+EM   ++ P+ +T + VL+ACSH GLV 
Sbjct: 479 QEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVD 538

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           EG + +E M   YG+ P ++H  C+VDL GRAG L  A+  I+   +     +W +LL +
Sbjct: 539 EGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLAS 598

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           C+IHR+   G+  A +++E  P +S  YV++ NMY   G     +K R  M+  GV+K P
Sbjct: 599 CRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEP 658

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           G +W++       F+  D S+ ++  IY  L
Sbjct: 659 GLSWIELKCGVHSFVAGDKSHPESSAIYTKL 689


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  306 bits (783), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 202/664 (30%), Positives = 335/664 (50%), Gaps = 88/664 (13%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN--SNIRYP--LPW 143
           K++   KQ+HA    +GL ++ V + KL+ F      +N      E     IRYP  L +
Sbjct: 48  KSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTD--PFNGNLNYAEKMFKYIRYPCLLIY 105

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           NL+I  + + G Y   L ++ +++   +  DNFTYP V KA G +               
Sbjct: 106 NLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYL--------------- 150

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQL 262
                           G+  + +  R L  K  LE D    N++I  YA   L      L
Sbjct: 151 ----------------GEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKML 194

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACS 321
           F EM +     +VI+WN +  G ++   F+  + +  RM+ +   +   ATV+  L AC+
Sbjct: 195 FDEMPDR----DVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACT 250

Query: 322 HVGALKLGKEIH-------------GSAVRGCYGE----------YENVRN-------AL 351
            +  L+LGK+IH             G+A+   Y +          +E + +        +
Sbjct: 251 ALKRLELGKKIHHYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTM 310

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           ++ Y+ C +L  A  LF+ +  + ++ W +M++GY   +  +E+  LFREM    V+P+ 
Sbjct: 311 VSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDK 370

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
             + S+L  CA+   ++ GK  H +I    +  + ++   +L+EMYA+ G + +A  +F 
Sbjct: 371 FIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVV-GTALIEMYAKCGFIEKALEIFY 429

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            +  +D  ++TS+I G  + G+   AL+LF +M +  ++PD +T + VLSACSH GLV E
Sbjct: 430 GLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEE 489

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP---YTPTSAMWATLL 588
           G+K F  M   Y I P++EH+ C+VDL GRAGLLN+A+E+I K+P      T  ++ +LL
Sbjct: 490 GRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLL 549

Query: 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648
            AC+I+ N  +GE  A++L++    +S  + L+AN+YA    W+ + KVR  M+DLGV+K
Sbjct: 550 SACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKK 609

Query: 649 IPGCAWVDAGNVFSPFLVDDTSNVQAQEIY--------PLLGGLTELMKD---AGYVVKE 697
            PGC+ ++  ++   F     S+ + +EIY        PLLG     M+     G    E
Sbjct: 610 TPGCSSIEVDSIIHEFFSGHPSHPEMREIYYMLNIMAKPLLGSAKNEMEGEDLVGMTFDE 669

Query: 698 EFCS 701
           + CS
Sbjct: 670 QGCS 673



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 220/469 (46%), Gaps = 13/469 (2%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +K FA +GN  +    F+++R      D    ++  +    G +  +++ ++L       
Sbjct: 109 IKAFAKKGNYKRTLVLFSKLREDGLWPDNF--TYPFVFKAIGYLGEVSKAEKLRGLVTKT 166

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GLE +  +   L+  YA  +L +    L +    R  + WN++IS YV+   + +A+ V+
Sbjct: 167 GLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVF 226

Query: 164 KQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222
            +MQ    +  D  T  S L AC  +  ++ G+ +H  +    +++  + NAL+ MY K 
Sbjct: 227 CRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGNALLDMYCKC 286

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV-NVITWNTI 281
           G + +AR +F++M  ++ + W TM+S YA+ G  +EA +LF     EG  + +V+ W  +
Sbjct: 287 GCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELF-----EGSPIRDVVIWTAM 341

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
             G ++   F   + L   M+ ++   D    V  L  C+  GA++ GK IH        
Sbjct: 342 INGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRI 401

Query: 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
                V  ALI MY++C  +  A  +F     K   +W S++ G        ++  LF +
Sbjct: 402 PIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSK 461

Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
           M ++GV P+ +T   +L  C+    ++ G++F   +         +  +  LV++  R+G
Sbjct: 462 MKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAG 521

Query: 462 KVPEAKSVFDLMSRRDEVT----YTSLIAGYGIQGEGRVALKLFEEMNK 506
            + EA+ +   +   ++      Y SL++   I G   +  ++ +++ K
Sbjct: 522 LLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVK 570


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 190/628 (30%), Positives = 326/628 (51%), Gaps = 61/628 (9%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+Q+H+  I +G  +N      L+  YA      +A     + +    + WN +I+ Y +
Sbjct: 118 GQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQ 177

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF--------GRVVHSCIDAC 204
            G    A  +   M+    + D+ TY  +L     + D DF        G+++   ++  
Sbjct: 178 AGDRETAFWLLDCMEQEGEKVDDGTYAPLLPL---LDDADFCNLTSQLHGKIIKHGLELV 234

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLF 263
           +     + NAL++ Y K G +D A+R+FD     RD V+WN++++AY  +     AF+L 
Sbjct: 235 NT----MCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLL 290

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           ++MQE G E ++ ++ +I                                   + AC + 
Sbjct: 291 IDMQEHGFEPDLYSYTSI-----------------------------------ISACFNE 315

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMY--SRCKDLRHAYILFKMTAEKSIITWNS 381
                G+ +HG  ++  + +   + NALI+MY  S    ++ A  +F+    K  ++WNS
Sbjct: 316 NISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNS 375

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           +L+G +    +E++   F  M  + ++ ++ + +++L  C+ +A  Q G++ H   L+  
Sbjct: 376 ILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYG 435

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           + +   +  +SL+ MY++ G + +A+  F+  S+   +T+ +L+ GY   G+  VAL LF
Sbjct: 436 LESNEFVS-SSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLF 494

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M + ++K DH+T VAVL+ACSH GLV +G K    M S YG+ P++EH+AC VDLYGR
Sbjct: 495 FLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGR 554

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           +G L +AK +I +MP+ P + +W T LGAC+   N  +    A  LLE  PE    YVL+
Sbjct: 555 SGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLL 614

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +NMY     WD+ AKV+  M++ GV+K+PG +W++  N    F+  D S+   Q+IY LL
Sbjct: 615 SNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLL 674

Query: 682 GGLTE---LMKDA-GYVVKEEFCSEEEI 705
             L E    M+DA G+   + F  +EE+
Sbjct: 675 EVLLEEITRMEDADGF---KSFLEQEEL 699



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 148/296 (50%), Gaps = 6/296 (2%)

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           D  + N +++ Y      + A  LF EM       + ++WNT+  G +  GN +   ++L
Sbjct: 32  DVYTCNNILNGYWKCKELRSADVLFDEMPMR----DSVSWNTMIAGHINCGNLEASWDVL 87

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
             MR+    LD       L   +  G   LG+++H   ++  Y E     +AL+ MY++C
Sbjct: 88  RCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKC 147

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
           + L  AY+ F   ++ + ++WN+M++GY      E + +L   M + G + +  T A +L
Sbjct: 148 EKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLL 207

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RD 477
           PL           + H  I++  +   + +  N+L+  Y++ G + +AK +FD  +  RD
Sbjct: 208 PLLDDADFCNLTSQLHGKIIKHGLELVNTMC-NALITSYSKCGSLDDAKRIFDSSAGIRD 266

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            VT+ SL+A Y ++ +  +A KL  +M ++  +PD  +  +++SAC +  +   G+
Sbjct: 267 LVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGR 322



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY--ASFSLYNNACFL 131
           L S+  II  C        G+ LH   I  G E++  +   L++ Y  + +     A  +
Sbjct: 302 LYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCI 361

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            E+   +  + WN +++   + G   +A+  +  M+S  +  D++++ +VL++C ++   
Sbjct: 362 FESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATF 421

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ +H   +    E + FV ++L+ MY K G ++ ARR F++  +  +++WN ++  Y
Sbjct: 422 QLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGY 481

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           A  G    A  LF  M+E+ V+++ IT+  +   C   G
Sbjct: 482 AQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIG 520



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 117/239 (48%), Gaps = 8/239 (3%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R++    L   +  G+   A ++F  +R  +A+ D+   SF+ ++  C  +     G+Q+
Sbjct: 370 RVSWNSILTGLSQTGSSEDAVKSFLHMR--SAAMDIDHYSFSAVLRSCSDLATFQLGQQI 427

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H  A+  GLE N  +   L+  Y+   +  +A    E ++    + WN L+  Y + G  
Sbjct: 428 HVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQC 487

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNA 214
             AL ++  M+ ++++ D+ T+ +VL AC  +  V+ G     C+++ +     +  +  
Sbjct: 488 NVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYAC 547

Query: 215 LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQL---FVEMQEE 269
            V +YG+ G+++ A+ L ++M  + D   W T + A  S G  + A Q+    +EM+ E
Sbjct: 548 AVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPE 606


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 191/681 (28%), Positives = 334/681 (49%), Gaps = 46/681 (6%)

Query: 12  GLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHD 71
           GLS+     F+  + K  +   ++M +        F G G    + + +   +  +    
Sbjct: 219 GLSIDAWRVFVEIEDKSNVVLWNVMIVG-------FGGSGICESSLDLYMLAKNNSVK-- 269

Query: 72  VVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFL 131
           +V  SF   +  C + +    G+Q+H   + +GL  +P +   L++ Y+   +   A  +
Sbjct: 270 LVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETV 329

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
                 +    WN +++ Y  + +   AL ++  M+ + +  D+FT  +V+  C  +   
Sbjct: 330 FSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLY 389

Query: 192 DFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
           ++G+ VH+                               LF + ++  +   + +++ Y+
Sbjct: 390 NYGKSVHA------------------------------ELFKRPIQSTSTIESALLTLYS 419

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL--D 309
             G   +A+ +F  M+E+    +++ W ++  G  + G FK  L++   M+  +  L  D
Sbjct: 420 KCGCDPDAYLVFKSMEEK----DMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPD 475

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
           S        AC+ + AL+ G ++HGS ++        V ++LI +YS+C     A  +F 
Sbjct: 476 SDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFT 535

Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
             + ++++ WNSM+S Y+  +  E S  LF  M   G+ P+ V+I S+L   +  A+L  
Sbjct: 536 SMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLK 595

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK  H Y LR  + ++  L  N+L++MY + G    A+++F  M  +  +T+  +I GYG
Sbjct: 596 GKSLHGYTLRLGIPSDTHLK-NALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYG 654

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G+   AL LF+EM K    PD VT ++++SAC+HSG V EG+  FE M   YGI P +
Sbjct: 655 SHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNM 714

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH+A MVDL GRAGLL +A   I  MP    S++W  LL A + H N  +G  +AEKLL 
Sbjct: 715 EHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLR 774

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             PE    YV + N+Y   G  ++ AK+   M++ G+ K PGC+W++  +  + F    +
Sbjct: 775 MEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVFFSGGS 834

Query: 670 SNVQAQEIYPLLGGLTELMKD 690
           S+    EI+ +L  L   M D
Sbjct: 835 SSPMKAEIFNVLNRLKSNMVD 855



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 120/496 (24%), Positives = 221/496 (44%), Gaps = 53/496 (10%)

Query: 92  QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNAC-FLVENSNIRYPLPWNLLISLY 150
           +GKQ+H   +   L+ +  L   L+  Y  F L  +A    VE  +    + WN++I  +
Sbjct: 188 EGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGF 247

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF 210
              G    +L +Y   ++  ++  + ++   L AC +  +  FGR +H     C    + 
Sbjct: 248 GGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIH-----CDVVKMG 302

Query: 211 VHN------ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
           +HN      +L+SMY K G V  A  +F  ++++    WN M++AYA       A  LF 
Sbjct: 303 LHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFG 362

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
            M+++ V  +  T + +                                   +  CS +G
Sbjct: 363 FMRQKSVLPDSFTLSNV-----------------------------------ISCCSVLG 387

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
               GK +H    +        + +AL+T+YS+C     AY++FK   EK ++ W S++S
Sbjct: 388 LYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLIS 447

Query: 385 GYTHLDCAEESAFLFREM--FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           G       +E+  +F +M      ++P+   + S+   CA +  L+ G + H  +++  +
Sbjct: 448 GLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGL 507

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
              ++ + +SL+++Y++ G    A  VF  MS  + V + S+I+ Y       +++ LF 
Sbjct: 508 V-LNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFN 566

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGR 561
            M    I PD V++ +VL A S +  +++G K     T   GI P   H    ++D+Y +
Sbjct: 567 LMLSQGIFPDSVSITSVLVAISSTASLLKG-KSLHGYTLRLGI-PSDTHLKNALIDMYVK 624

Query: 562 AGLLNKAKEIITKMPY 577
            G    A+ I  KM +
Sbjct: 625 CGFSKYAENIFKKMQH 640



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 179/404 (44%), Gaps = 44/404 (10%)

Query: 140 PLPWNLLISLYVRDGFYAEALCVY-KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198
           P   N  I   ++ G Y +AL +Y K   S       FT+PS+LKAC  + ++ +G+ +H
Sbjct: 24  PASINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIH 83

Query: 199 -SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-------RDAVSWNTMISAY 250
            S +     +  F+  +LV+MY K G +D A ++FD   +       RD   WN+MI  Y
Sbjct: 84  GSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGY 143

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                +KE    F  M   GV  +  + + +     + GNF          R +E     
Sbjct: 144 FKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNF----------RREE----- 188

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
                             GK+IHG  +R        ++ ALI MY +      A+ +F  
Sbjct: 189 ------------------GKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVE 230

Query: 371 TAEKS-IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
             +KS ++ WN M+ G+      E S  L+     + V+    +    L  C++  N   
Sbjct: 231 IEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGF 290

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G++ HC +++  + N+  +   SL+ MY++ G V EA++VF  +  +    + +++A Y 
Sbjct: 291 GRQIHCDVVKMGLHNDPYVC-TSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYA 349

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
               G  AL LF  M +  + PD  T+  V+S CS  GL   G+
Sbjct: 350 ENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGK 393


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 190/604 (31%), Positives = 300/604 (49%), Gaps = 63/604 (10%)

Query: 101 IALGLEKNPVLVPKLVTFYA-SFSLYNNACFLV----ENSNIRYPLPWNLLISLYVRDGF 155
           +  GL  +P    +L+ F A S S Y N C  +    EN N      WN+ I  +     
Sbjct: 2   VITGLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPN---AFSWNVTIRGFSESEN 58

Query: 156 YAEALCVYKQMQSR---RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFV 211
             +A+  YKQM  R     R D+FTYP + K C ++     G ++   +     E    V
Sbjct: 59  PKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHV 118

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
           HNA + M+   G+++ AR++FD+   RD VS                             
Sbjct: 119 HNASIHMFASCGEMENARKVFDESPVRDLVS----------------------------- 149

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSHVGALKLGK 330
                 WN +  G  + G  +  +E+   M ++    D V T+IGL  +C+ +G L  GK
Sbjct: 150 ------WNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDV-TMIGLVSSCAMLGDLNRGK 202

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY-------------ILFKMTAEKSII 377
           E +             + NAL+ M+S+C D+  A               LF    EK ++
Sbjct: 203 EFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVV 262

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            WN+M+ G      ++++  LF+EM  S  +P+ +T+   L  C+++  L  G   H YI
Sbjct: 263 MWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYI 322

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
            + ++ + ++ L  SLV+MYA+ G + EA  VF  +  R+ +TYT++I G  + G+   A
Sbjct: 323 EKHSL-SLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTA 381

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           +  F EM    I PD +T + +LSAC H G++  G+  F +M S + + PQL+H++ MVD
Sbjct: 382 ISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVD 441

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L GRAGLL +A +++  MP    +A+W  LL  C++H N  +GE AA+KLLE  P +SG 
Sbjct: 442 LLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGI 501

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEI 677
           YVL+  MY     W+   + R  M + GV KIPGC+ ++   + S F+V D S  ++++I
Sbjct: 502 YVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVSEFIVRDKSRPESEKI 561

Query: 678 YPLL 681
           Y  L
Sbjct: 562 YDCL 565


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 193/668 (28%), Positives = 338/668 (50%), Gaps = 60/668 (8%)

Query: 50  RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK-N 108
           RG  S++ +  T +R+ A             +  CG+   L  G+ LHA  +  G    +
Sbjct: 5   RGQHSRSLDTATSLRLAAP------------LQSCGRAGDLRLGRCLHARLVLSGAAAAS 52

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             L   L+T Y+  +   +A  L +       + W  L+S   ++  + +AL  +  M  
Sbjct: 53  TFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCR 112

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA--CHEWSLFVHNALVSMYGKFGQVD 226
             +    F   S  +A   +     G  +H C+      +  LFV + L  MY K G + 
Sbjct: 113 AGLVPTQFALSSAARAAAALAARHAGAQLH-CVGVRLGFDAELFVASNLADMYSKSGLLV 171

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE---GVEVNVITWNTIAG 283
            A R+FD+M ++DAV+W  MI  YA  G  + A   F +M+ E   G + +V+     A 
Sbjct: 172 EACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSAS 231

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
           G L+ G                                      L + IH   ++  + +
Sbjct: 232 GGLKDG-------------------------------------WLARAIHSCVMKSGFEQ 254

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMT-AEKSIITWNSMLSGYTHLDCAEESAFLFREM 402
              VRNAL  MY++  D+ +A  + K+     ++++  S++ GY   DC E++  +F E+
Sbjct: 255 EVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIEL 314

Query: 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK 462
            R GVEPN  T +S++  CA  A L+ G + H  +++ ++ ++  +  ++L++MY + G 
Sbjct: 315 RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVS-STLLDMYGKCGL 373

Query: 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522
           +  +  +F  +    ++ + + I      G GR A++ F+ M  + I+P+H+T V++L+A
Sbjct: 374 ISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTA 433

Query: 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
           CSH+GLV EG K F  M   +GI P+ EH++C++D+YGRAG L++A++ I +MP  P + 
Sbjct: 434 CSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAY 493

Query: 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642
            W +LLGAC++  N  +GE AA+ +++  P+N+G +V ++ +YA+ G W+ +  VR  MR
Sbjct: 494 GWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMR 553

Query: 643 DLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF--C 700
           D  ++K+PG +WVD+      F  +D S+ Q ++IY  L  L E +K+ GYV    F  C
Sbjct: 554 DNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPC 613

Query: 701 SEEEIVEE 708
           + E+  ++
Sbjct: 614 NLEDTAKQ 621



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 12/283 (4%)

Query: 298 LSRMRTQETYLDSVATVIGLGA----CSHVGALKLGKEIHGSAV-RGCYGEYENVRNALI 352
           + + R Q +     AT + L A    C   G L+LG+ +H   V  G       + N LI
Sbjct: 1   MGKFRGQHSRSLDTATSLRLAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLI 60

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
           TMYS C D+  A  LF      ++++W +++SG T      ++   F  M R+G+ P   
Sbjct: 61  TMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQF 120

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
            ++S     A +A    G + HC  +R   F+  L + ++L +MY++SG + EA  VFD 
Sbjct: 121 ALSSAARAAAALAARHAGAQLHCVGVRLG-FDAELFVASNLADMYSKSGLLVEACRVFDQ 179

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVE 531
           M ++D V +T++I GY   G    A+  F +M +   +  D   + +VLSA   SG + +
Sbjct: 180 MPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSA---SGGLKD 236

Query: 532 G--QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
           G   +         G   ++     + D+Y +A  ++ A  ++
Sbjct: 237 GWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVV 279


>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
          Length = 569

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 180/562 (32%), Positives = 282/562 (50%), Gaps = 50/562 (8%)

Query: 174 DNFTYPSVLKACGE--MMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
           +++T P  L+A     +        +H  + A H+    V   +++ Y + G+   ARR+
Sbjct: 10  NSYTLPLALRAAASPRVASAVHAHALHLGLHAQHD----VAGQILAAYSRLGRAADARRV 65

Query: 232 FDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           FD M   R    WN +ISAY+S      A   F  M   G   + +TW  +     R+G 
Sbjct: 66  FDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGK 125

Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL--GKEIHG-SAVRGCYGEYENV 347
              VL+L   M+      ++ +  + L AC + G L L  GK IHG   V+G    Y  V
Sbjct: 126 HADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFV 185

Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES------------ 395
            N+LI MY +  ++  A   F+    K+ +TWN++++ Y      +E+            
Sbjct: 186 TNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAAGLCDEALDVLAQMEQIGG 245

Query: 396 --------------AF-----------LFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
                          F           LFR M +  + PN VT+A++L  C  +  L+ G
Sbjct: 246 TVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLG 305

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           +E H + ++ A  + H L+ N L+ MYA+ GKV  A+ VFD M  RD +++ S++AGYG+
Sbjct: 306 RELHGHAMK-AELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGM 364

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G    AL LF +M    ++PD VT VAVLSAC H+G V EG++ F+RM   + I P +E
Sbjct: 365 HGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSME 424

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ CMV L GRAGLL  A E++  MP  P   +W  LL +C+IH +  + E     +L++
Sbjct: 425 HYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQS 484

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
             +++G ++LI N+YA  G WD+  KVR   ++ G+RK PG +W++  N    F      
Sbjct: 485 EDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKVVAFAAGSAP 544

Query: 671 N--VQAQEIYPLLGGLTELMKD 690
                A++++ +L  L   M+D
Sbjct: 545 PNLTGAEDVFGMLDDLYAEMED 566



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 200/390 (51%), Gaps = 9/390 (2%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF--GRVVHSC 200
           W  L+S + R G +A+ L ++ +MQ     G+  +    L AC    D+    G+ +H C
Sbjct: 113 WTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGC 172

Query: 201 --IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             +       LFV N+L+ MYGK G++D A++ F     ++ V+WNT+I++YA+ GL  E
Sbjct: 173 GVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAAGLCDE 232

Query: 259 AFQLFVEMQEEG--VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           A  +  +M++ G  V  NV++W+ + GG   +G+    LEL  RM+ Q    + V     
Sbjct: 233 ALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATV 292

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
           L AC  + AL+LG+E+HG A++     +  V N LI MY++C  +  A  +F     + +
Sbjct: 293 LSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDL 352

Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY 436
           I+WNSML+GY      +E+  LF +M  + VEP+ VT  ++L  C     +  G+     
Sbjct: 353 ISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDR 412

Query: 437 ILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGR 495
           ++R    +  +  +  +V +  R+G + +A  + + M  R D   + +L+    I G+  
Sbjct: 413 MVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAA 472

Query: 496 VALKLFEEM--NKNQIKPDHVTMVAVLSAC 523
           +A      +  +++Q   +H+ +  + + C
Sbjct: 473 MAEATIANVLQSEDQSTGNHMLITNLYAMC 502



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 39/252 (15%)

Query: 89  ALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           ALA+GK +H C +  GL    + V   L+  Y      ++A     ++  +  + WN LI
Sbjct: 162 ALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLI 221

Query: 148 SLYVRDGFYAEALCV-------------------------------------YKQMQSRR 170
           + Y   G   EAL V                                     +++MQ + 
Sbjct: 222 TSYAAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQW 281

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           +  +  T  +VL AC +++ +  GR +H   + A  +    V N L++MY K G+V  AR
Sbjct: 282 LSPNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGAR 341

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           ++FD M  RD +SWN+M++ Y   GL  EA  LF +M    VE + +T+  +   C   G
Sbjct: 342 KVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAG 401

Query: 290 NFKGVLELLSRM 301
                  L  RM
Sbjct: 402 RVTEGRRLFDRM 413



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 44/249 (17%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G+  +A E F R++    S +VV  + A ++  C  + AL  G++LH  A+   L+
Sbjct: 261 FASSGDTDRALELFRRMQQQWLSPNVV--TMATVLSACVDLLALRLGRELHGHAMKAELD 318

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           ++ ++   L+  YA     + A  + +    R  + WN +++ Y   G   EAL ++  M
Sbjct: 319 RHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDM 378

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
               +  D  T+ +VL ACG                                    G+V 
Sbjct: 379 AGATVEPDGVTFVAVLSACGHA----------------------------------GRVT 404

Query: 227 VARRLFDKMLERDAVS-----WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
             RRLFD+M+    +S     +  M+      GL ++A +L   M    V  ++  W  +
Sbjct: 405 EGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMP---VRPDLCVWGAL 461

Query: 282 AGGCLRTGN 290
              C   G+
Sbjct: 462 LNSCRIHGD 470


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 197/628 (31%), Positives = 317/628 (50%), Gaps = 21/628 (3%)

Query: 76  SFAHIIFCCGKVKALA---QGKQLHACAIALGLE--KNPVLVPKLVTFYASFSLYNNACF 130
           + A I+  C  ++  A    GK++H C +   +E  ++  ++  L++FY        A F
Sbjct: 184 TIASILPVCASLEENAGYRYGKEVH-CHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEF 242

Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMM 189
           L  N   R  + WN +I+ Y  +G + +AL ++ +  S   I+ D+ T  SVL AC  + 
Sbjct: 243 LFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVH 302

Query: 190 DVDFGRVVHSCI--DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
           ++   + +H  I           V NAL+S Y K      A + F  +  +D +SWN ++
Sbjct: 303 NLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAIL 362

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
            A+   G       L   M  EG+  + IT  TI          K V E  S        
Sbjct: 363 DAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLL 422

Query: 308 LDSVATVIG---LGACSHVGALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLR 362
                  +G   L A +  G +K    I GS       E  NV   N++I+ Y       
Sbjct: 423 QGDAGPTLGNGMLDAYAKCGNMKYAVNIFGS-----LSEKRNVVTCNSMISGYVNSSSHD 477

Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA 422
            AY +F   +E  + TWN M+  Y   D  +++  LF E+   G++P+ VTI SILP CA
Sbjct: 478 DAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACA 537

Query: 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYT 482
            +A++   ++ H Y++R A FN+ + L  + ++MY++ G V  A  +F    ++D V +T
Sbjct: 538 HMASVHMLRQCHGYVIR-ACFND-VRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFT 595

Query: 483 SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542
           +++ G+ + G G  AL++F  M +  +KPDHV + AVL ACSH+GLV EG K F  +  +
Sbjct: 596 AMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKV 655

Query: 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602
           +G  P +E +AC+VDL  R G +  A   +T+MP    + +W TLLGAC+ H    +G  
Sbjct: 656 HGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRV 715

Query: 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFS 662
            A+ L +   +N G YV+++N+YAA   WD + ++R  MR   ++K  GC+W++ G   +
Sbjct: 716 VADHLFKIESDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSWIEVGRRKN 775

Query: 663 PFLVDDTSNVQAQEIYPLLGGLTELMKD 690
            F+  D+S+ Q   IY  L  L +LMK+
Sbjct: 776 VFIAGDSSHPQRSIIYRTLSTLDQLMKE 803



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 155/574 (27%), Positives = 255/574 (44%), Gaps = 92/574 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  C +++  A GK +H+  I  GLE + +    L++ YA   L  +  +   N 
Sbjct: 83  TIAIVLPVCARLREDA-GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNR 141

Query: 136 -NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD---V 191
              +  + WN +I+ +  + F  EA  ++  M    I+ +  T  S+L  C  + +    
Sbjct: 142 IEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGY 201

Query: 192 DFGRVVHSCIDACHEW-------SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
            +G+ VH     CH          + V N+L+S Y + GQ++ A  LF  M  RD VSWN
Sbjct: 202 RYGKEVH-----CHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWN 256

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            +I+ YAS G W +A +LF E          I+  TI                       
Sbjct: 257 AIIAGYASNGEWLKALELFSEF---------ISLETIKP--------------------- 286

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRH 363
               DSV  V  L AC+HV  L++ K IHG  +R     E  +V NAL++ Y++C   + 
Sbjct: 287 ----DSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQA 342

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           A   F M + K +I+WN++L  +T   C      L   M R G+ P+ +TI +I+   A 
Sbjct: 343 ALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAA 402

Query: 424 VANLQHGKEFHCYILRRAMF--NEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVT 480
           V+ ++  KE H Y +R  +   +    L N +++ YA+ G +  A ++F  +S +R+ VT
Sbjct: 403 VSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVT 462

Query: 481 YTSLIAGY----------------------------GIQGEGRV---ALKLFEEMNKNQI 509
             S+I+GY                             +  E      AL LF E+    +
Sbjct: 463 CNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGM 522

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           KPD VT++++L AC+H    V   +Q      I   F  +      +D+Y + G +  A 
Sbjct: 523 KPDIVTIMSILPACAHMA-SVHMLRQCHGYV-IRACFNDVRLNGAFIDMYSKCGSVFGAY 580

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           ++    P      M+  ++G   +H   G+GE A
Sbjct: 581 KLFLSSPQKDL-VMFTAMVGGFAMH---GMGEEA 610



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 163/318 (51%), Gaps = 41/318 (12%)

Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS-KGLWKEAFQLFVEMQEEGVE 272
            L+++Y K G +D   +LF +M +RD V WN ++S  A  +    E  +LF  M      
Sbjct: 18  GLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMH----- 72

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
                                           E   +SV   I L  C+ +     GK +
Sbjct: 73  -----------------------------MVNEAKPNSVTIAIVLPVCARLRE-DAGKSV 102

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDL-RHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
           H   ++     +    NALI+MY++C  +   AY  F     K +++WN++++G++    
Sbjct: 103 HSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKF 162

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARV---ANLQHGKEFHCYILRRAMFNEHLL 448
            EE+  LF  M +  ++PNY TIASILP+CA +   A  ++GKE HC++LRR    E + 
Sbjct: 163 TEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVEDVS 222

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE-MNKN 507
           + NSL+  Y R G++ +A+ +F  M  RD V++ ++IAGY   GE   AL+LF E ++  
Sbjct: 223 VINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLE 282

Query: 508 QIKPDHVTMVAVLSACSH 525
            IKPD VT+V+VL AC+H
Sbjct: 283 TIKPDSVTLVSVLPACAH 300



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 5/184 (2%)

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE-ESAFLFREM 402
           Y+++   L+ +Y++   L +   LF    ++  + WN +LSG       E E   LFR M
Sbjct: 12  YDSLCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAM 71

Query: 403 -FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
              +  +PN VTIA +LP+CAR+     GK  H Y+++  +   H L  N+L+ MYA+ G
Sbjct: 72  HMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGL-ESHTLAGNALISMYAKCG 129

Query: 462 KV-PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520
            V  +A + F+ +  +D V++ ++IAG+        A KLF  M K  I+P++ T+ ++L
Sbjct: 130 LVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASIL 189

Query: 521 SACS 524
             C+
Sbjct: 190 PVCA 193


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  305 bits (782), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 190/634 (29%), Positives = 314/634 (49%), Gaps = 46/634 (7%)

Query: 71  DVVLD--SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA 128
           D+ LD  +F++ +  CG+   L  G+ +HA     GL    +L   L+  Y      + A
Sbjct: 115 DLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWA 174

Query: 129 CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188
             + E+++    + WN LI+ YVR G   E L +  +M    +  +++   S LKACG  
Sbjct: 175 RLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSN 234

Query: 189 MD--VDFGRVVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
               ++ G+++H C +    +  + V  AL+  Y K G ++ A ++F  M + + V +N 
Sbjct: 235 FSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNA 294

Query: 246 MISAY-----ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300
           MI+ +      +     EA  LF EMQ  G++ +  T+++I                   
Sbjct: 295 MIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSI------------------- 335

Query: 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360
                           L ACS + A + GK+IH    +      E + NAL+ +YS    
Sbjct: 336 ----------------LKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 379

Query: 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
           +      F  T +  +++W S++ G+      E    LF E+  SG +P+  TI+ +L  
Sbjct: 380 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 439

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT 480
           CA +A ++ G++ H Y ++  + N   ++ NS + MYA+ G +  A   F      D V+
Sbjct: 440 CANLAAVKSGEQIHAYAIKTGIGN-FTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVS 498

Query: 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
           ++ +I+     G  + A+ LFE M  + I P+H+T + VL ACSH GLV EG + FE M 
Sbjct: 499 WSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMK 558

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600
             +GI P ++H AC+VDL GRAG L +A+  I    +     MW +LL AC++H+ T  G
Sbjct: 559 KDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTG 618

Query: 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660
           +  AE+++E  PE +  YVL+ N+Y   G      ++R  M+D GV+K PG +W++ GNV
Sbjct: 619 KRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNV 678

Query: 661 FSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
              F+  D S+  +Q IY  L  + E +K   Y+
Sbjct: 679 VHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI 712



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 139/529 (26%), Positives = 247/529 (46%), Gaps = 50/529 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++ C  +  +L  GK  H   I    +    L+  L+  Y      + A  L +  
Sbjct: 21  TYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRM 80

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN LIS Y + GFY E + ++K+ +   +R D FT+ + L  CG  +D+  GR
Sbjct: 81  PKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGR 140

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           ++H+ I        + + N+L+ MY K G++D AR +F+   E D+VSWN++I+ Y   G
Sbjct: 141 LIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIG 200

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              E  +L V+M   G+ +N     +    C    NF   +E                  
Sbjct: 201 SNDEMLRLLVKMLRHGLNLNSYALGSALKAC--GSNFSSSIE------------------ 240

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
                         GK +HG AV+        V  AL+  Y++  DL  A  +FK+  + 
Sbjct: 241 -------------CGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDP 287

Query: 375 SIITWNSMLSGYTHLDC-----AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
           +++ +N+M++G+  ++      A E+ +LF EM   G++P+  T +SIL  C+ +   + 
Sbjct: 288 NVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFEC 347

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           GK+ H  I +  + ++   + N+LVE+Y+ SG + +    F    + D V++TSLI G+ 
Sbjct: 348 GKQIHAQIFKYNLQSDE-FIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHV 406

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G+    L LF E+  +  KPD  T+  +LSAC++   V  G++        Y I   +
Sbjct: 407 QNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQ-----IHAYAIKTGI 461

Query: 550 EHFACMVD----LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
            +F  + +    +Y + G ++ A  +  K    P    W+ ++ +   H
Sbjct: 462 GNFTIIQNSQICMYAKCGDIDSAN-MTFKETKNPDIVSWSVMISSNAQH 509



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 196/430 (45%), Gaps = 51/430 (11%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
           D+ TY  +++       +  G++ H   I  C +  LF+ N L+ MY K G+ DVA++LF
Sbjct: 18  DSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLF 77

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           D+M +R+ VSWN++IS Y   G + E   LF E +   + ++  T++     C RT    
Sbjct: 78  DRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT---- 133

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
                          LD                L+LG+ IH        G    + N+LI
Sbjct: 134 ---------------LD----------------LRLGRLIHALITVSGLGGPVLLTNSLI 162

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MY +C  +  A ++F+   E   ++WNS+++GY  +   +E   L  +M R G+  N  
Sbjct: 163 DMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSY 222

Query: 413 TIASILPLCAR--VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
            + S L  C     ++++ GK  H   ++  + +  +++  +L++ YA+ G + +A  +F
Sbjct: 223 ALGSALKACGSNFSSSIECGKMLHGCAVKLGL-DLDVVVGTALLDTYAKIGDLEDATKIF 281

Query: 471 DLMSRRDEVTYTSLIAGYGIQGE------GRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            LM   + V Y ++IAG+ +Q E         A+ LF EM    +KP   T  ++L ACS
Sbjct: 282 KLMPDPNVVMYNAMIAGF-LQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACS 340

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTSA 582
            +    E  KQ       Y +  Q + F    +V+LY  +G +    +     P     +
Sbjct: 341 -TIEAFECGKQIHAQIFKYNL--QSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVS 397

Query: 583 MWATLLGACQ 592
             + ++G  Q
Sbjct: 398 WTSLIVGHVQ 407



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 144/301 (47%), Gaps = 4/301 (1%)

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
           LDSV     +   +  G+L  GK  H   ++ C+     + N L+ MY +C +   A  L
Sbjct: 17  LDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKL 76

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F    ++++++WNS++SGYT +    E   LF+E   S +  +  T ++ L +C R  +L
Sbjct: 77  FDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL 136

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
           + G+  H  I    +    +LL NSL++MY + G++  A+ VF+     D V++ SLIAG
Sbjct: 137 RLGRLIHALITVSGLGGP-VLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAG 195

Query: 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC-SHSGLVVEGQKQFERMTSIYGIF 546
           Y   G     L+L  +M ++ +  +   + + L AC S+    +E  K         G+ 
Sbjct: 196 YVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLD 255

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606
             +     ++D Y + G L  A +I   MP  P   M+  ++ A  +   T   E+A E 
Sbjct: 256 LDVVVGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMI-AGFLQMETMADEFANEA 313

Query: 607 L 607
           +
Sbjct: 314 M 314


>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39952, mitochondrial; Flags: Precursor
 gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 775

 Score =  305 bits (782), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 174/573 (30%), Positives = 300/573 (52%), Gaps = 46/573 (8%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C  + AL +G+ LH  A+  GL  +  +   + +FY+     + A              W
Sbjct: 240 CSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSW 299

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
             +I+   R G   E+  ++ +MQ++ +  D      ++   G+MM V  G+  H   I 
Sbjct: 300 TSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIR 359

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGLWKEAFQ 261
            C      V N+L+SMY KF  + VA +LF ++ E  +  +WNTM+  Y       +  +
Sbjct: 360 HCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVKCIE 419

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF ++Q  G+E                                   +DS +    + +CS
Sbjct: 420 LFRKIQNLGIE-----------------------------------IDSASATSVISSCS 444

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
           H+GA+ LGK +H   V+       +V N+LI +Y +  DL  A+ +F   A+ ++ITWN+
Sbjct: 445 HIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMF-CEADTNVITWNA 503

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           M++ Y H + +E++  LF  M     +P+ +T+ ++L  C    +L+ G+  H YI    
Sbjct: 504 MIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITE-- 561

Query: 442 MFNEH---LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
              EH   L L  +L++MYA+ G + +++ +FD  +++D V +  +I+GYG+ G+   A+
Sbjct: 562 --TEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAI 619

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            LF++M ++ +KP   T +A+LSAC+H+GLV +G+K F +M   Y + P L+H++C+VDL
Sbjct: 620 ALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQ-YDVKPNLKHYSCLVDL 678

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
             R+G L +A+  +  MP++P   +W TLL +C  H    +G   AE+ + + P+N GYY
Sbjct: 679 LSRSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYY 738

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
           +++ANMY+A G W++  + R  MR+ GV K  G
Sbjct: 739 IMLANMYSAAGKWEEAERAREMMRESGVGKRAG 771



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 146/609 (23%), Positives = 264/609 (43%), Gaps = 74/609 (12%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           +R  ++S    +D    +I C  +  +L   ++ +A  I  GL +N  +  KL++ YAS+
Sbjct: 14  LRKLSSSSASYVDRHISVILC-DQSLSLESLRKHNALIITGGLSENIFVASKLISSYASY 72

Query: 123 SLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
              N +  +      R    WN +I  +  +G YA +LC +  M       D+FT P V+
Sbjct: 73  GKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVV 132

Query: 183 KACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS 242
            AC E++    G  VH                LV  +G F              +R+   
Sbjct: 133 SACAELLWFHVGTFVH---------------GLVLKHGGF--------------DRNTAV 163

Query: 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
             + +  Y+  G  ++A  +F EM +     +V+ W  I  G ++ G  +G L  L +M 
Sbjct: 164 GASFVYFYSKCGFLQDACLVFDEMPDR----DVVAWTAIISGHVQNGESEGGLGYLCKMH 219

Query: 303 TQETYLDSV---ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK 359
           +  + +D         G  ACS++GALK G+ +HG AV+      + V++++ + YS+  
Sbjct: 220 SAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSG 279

Query: 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419
           +   AY+ F+   ++ + +W S+++        EES  +F EM   G+ P+ V I+ ++ 
Sbjct: 280 NPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLIN 339

Query: 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DE 478
              ++  +  GK FH +++R   F+    + NSL+ MY +   +  A+ +F  +S   ++
Sbjct: 340 ELGKMMLVPQGKAFHGFVIRHC-FSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNK 398

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
             + +++ GYG        ++LF ++    I+ D  +  +V+S+CSH G V+ G K    
Sbjct: 399 EAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLG-KSLHC 457

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLN------------------------------KA 568
                 +   +     ++DLYG+ G L                               KA
Sbjct: 458 YVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKA 517

Query: 569 KEIITKM---PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE-NSGYYVLIANM 624
             +  +M    + P+S    TLL AC    +   G+     + ET  E N      + +M
Sbjct: 518 IALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDM 577

Query: 625 YAATGCWDK 633
           YA  G  +K
Sbjct: 578 YAKCGHLEK 586



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 111/238 (46%), Gaps = 8/238 (3%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           K  E F +I+      D    S   +I  C  + A+  GK LH   +   L+    +V  
Sbjct: 416 KCIELFRKIQNLGIEIDSA--SATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNS 473

Query: 115 LVTFYASFSLYNNA--CFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172
           L+  Y        A   F   ++N+   + WN +I+ YV      +A+ ++ +M S   +
Sbjct: 474 LIDLYGKMGDLTVAWRMFCEADTNV---ITWNAMIASYVHCEQSEKAIALFDRMVSENFK 530

Query: 173 GDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRL 231
             + T  ++L AC     ++ G+++H  I +  HE +L +  AL+ MY K G ++ +R L
Sbjct: 531 PSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSREL 590

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           FD   ++DAV WN MIS Y   G  + A  LF +M+E  V+    T+  +   C   G
Sbjct: 591 FDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAG 648



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 109/270 (40%), Gaps = 41/270 (15%)

Query: 36  MRINLLETLKDFAGR-GNLSKAFEAFTRIRITAASHDVVLDSFAH--------------- 79
           + I+++ +L D  G+ G+L+ A+  F        + + ++ S+ H               
Sbjct: 466 LTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALFDRMV 525

Query: 80  -------------IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN 126
                        ++  C    +L +G+ +H        E N  L   L+  YA      
Sbjct: 526 SENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLE 585

Query: 127 NACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186
            +  L +  N +  + WN++IS Y   G    A+ ++ QM+   ++    T+ ++L AC 
Sbjct: 586 KSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACT 645

Query: 187 EMMDVDFGRVVHSCIDACHEW----SLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAV 241
               V+ G+ +       H++    +L  ++ LV +  + G ++ A      M    D V
Sbjct: 646 HAGLVEQGKKL---FLKMHQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMPFSPDGV 702

Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            W T++S+  + G     F++ + M E  V
Sbjct: 703 IWGTLLSSCMTHG----EFEMGIRMAERAV 728


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  305 bits (782), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 195/707 (27%), Positives = 343/707 (48%), Gaps = 53/707 (7%)

Query: 5    SSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKD-FAGRGNLSK-------- 55
            S +LILNG+S    ++    KW       +  +++L +   D F     LS+        
Sbjct: 830  SVQLILNGVSEVNWDE---GKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNW 886

Query: 56   -AFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
             A E F  +      +D V  +   ++        L  GKQ+H  A+  GL+ +  +   
Sbjct: 887  GAIECFVNMNGLNIDYDAV--TLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANS 944

Query: 115  LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
            LV  Y+       A  +  +      + WN +IS   +     E++ ++  +    ++ D
Sbjct: 945  LVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPD 1004

Query: 175  NFTYPSVLKACGEMMD-VDFGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232
            +FT  SVL+AC  ++D ++  R +H   +   +    FV   L+ +Y K G+++ A  LF
Sbjct: 1005 HFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLF 1064

Query: 233  DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
                + D   WN M+  Y      K+A +LF  + + G + + IT  T A  C       
Sbjct: 1065 QNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKAC------- 1117

Query: 293  GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
            G L LL +                            GK+IH  A++  +    +V + ++
Sbjct: 1118 GCLVLLDQ----------------------------GKQIHAHAIKAGFDSDLHVNSGIL 1149

Query: 353  TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
             MY +C D+ +A I+F   +    + W SM+SG       +++  ++  M +S V P+  
Sbjct: 1150 DMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEY 1209

Query: 413  TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
            T A+++   + V  L+ G++ H  +++    ++   +  SLV+MYA+ G + +A  +F  
Sbjct: 1210 TFATLIKASSCVTALEQGRQLHANVIKLDCVSDP-FVGTSLVDMYAKCGNIEDAYRLFKK 1268

Query: 473  MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
            M+ R+   + +++ G    G    A+ LF+ M  + I+PD V+ + +LSACSH+GL  E 
Sbjct: 1269 MNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEA 1328

Query: 533  QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
             +    M + YGI P++EH++C+VD  GRAGL+ +A ++I  MP+  ++++   LLGAC+
Sbjct: 1329 YEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACR 1388

Query: 593  IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
            I  +   G+  A +L    P +S  YVL++N+YAA   WD +   R  M+   V+K PG 
Sbjct: 1389 IQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGF 1448

Query: 653  AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            +W+D  N+   F+VDD S+ QA  IY  +  + + +++ GYV   EF
Sbjct: 1449 SWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEF 1495



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 160/596 (26%), Positives = 262/596 (43%), Gaps = 57/596 (9%)

Query: 93   GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV- 151
            GK  HA  +  G   +  L   L+T Y+     ++A  + + +  R  + WN ++  Y  
Sbjct: 640  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 152  ----RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHE 206
                 DG   E L +++ +++        T   VLK C     +     VH   I    E
Sbjct: 700  SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 759

Query: 207  WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
            W +FV  ALV++Y K G++  AR LFD M ERD V WN M+  Y   GL KEAFQLF E 
Sbjct: 760  WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 819

Query: 267  QEEGV---------------EVN--------------------------VITWNTIAGGC 285
               G+               EVN                          V  WN     C
Sbjct: 820  HRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSEC 879

Query: 286  LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
            L  G+  G +E    M       D+V  ++ L A +    L+LGK++HG AV+       
Sbjct: 880  LWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDV 939

Query: 346  NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            +V N+L+ MYS+      A  +F       +I+WNSM+S        EES  LF ++   
Sbjct: 940  SVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHE 999

Query: 406  GVEPNYVTIASILPLCAR-VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G++P++ T+AS+L  C+  +  L   ++ H + L+     +  +   +L+++Y++SGK+ 
Sbjct: 1000 GLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVA-TTLIDVYSKSGKME 1058

Query: 465  EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            EA+ +F      D   + +++ GY I  +G+ AL+LF  ++K+  K D +T+     AC 
Sbjct: 1059 EAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACG 1118

Query: 525  HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
               L+ +G KQ        G    L   + ++D+Y + G +  A  I+      P    W
Sbjct: 1119 CLVLLDQG-KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAG-IVFNYISAPDDVAW 1176

Query: 585  ATLLGACQIHRNTGIGEWAAEKLLETR--PENSGYYVLIANMYAATGCWDKLAKVR 638
             +++  C  + N         ++ ++R  P+   +  LI     A+ C   L + R
Sbjct: 1177 TSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLI----KASSCVTALEQGR 1228



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 8/205 (3%)

Query: 326 LKLGKEIHGS-AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
           L LGK  H    V G  G++  + N L+TMYS+C  L  A  +F  T E+ ++TWN++L 
Sbjct: 637 LLLGKCTHARIVVSGSAGDHF-LSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 695

Query: 385 GY-----THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
            Y     ++   A+E   LFR +  S      +T+A +L LC     L   +  H Y ++
Sbjct: 696 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK 755

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
             +    + +  +LV +Y++ G++ +A+ +FD M  RD V +  ++ GY   G  + A +
Sbjct: 756 IGL-EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQ 814

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACS 524
           LF E +++ ++PD  ++  +L+  S
Sbjct: 815 LFSEFHRSGLRPDEFSVQLILNGVS 839


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  305 bits (782), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 184/603 (30%), Positives = 301/603 (49%), Gaps = 42/603 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  ++  C  + ++  G  LH   + LG + +  +   LV  Y+  S   +A  + +  
Sbjct: 48  TYPLLLKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEM 107

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF-- 193
             R  + WN ++S Y R     +AL + K+M          T+ S+L     +   +F  
Sbjct: 108 PQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHL 167

Query: 194 -GRVVHSCIDACHEWSLFVH--NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
            G+ +H C+       L V   N+L+ MY +F  +D AR++FD M E+            
Sbjct: 168 LGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEK------------ 215

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310
                                  ++I+W T+ GG ++ G+      L  +M+ Q   +D 
Sbjct: 216 -----------------------SIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDF 252

Query: 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370
           V  +  +  C  V  L L   +H   ++    E + V N LITMY++C +L  A  +F +
Sbjct: 253 VVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDL 312

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             EKS+++W SM++GY HL    E+  LFR M R+ + PN  T+A+++  CA + +L  G
Sbjct: 313 IIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIG 372

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           +E   YI    + ++  +   SL+ MY++ G + +A+ VF+ ++ +D   +TS+I  Y I
Sbjct: 373 QEIEEYIFLNGLESDQQV-QTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAI 431

Query: 491 QGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
            G G  A+ LF +M   + I PD +   +V  ACSHSGLV EG K F+ M   +GI P +
Sbjct: 432 HGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTV 491

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH  C++DL GR G L+ A   I  MP    + +W  LL AC+IH N  +GE A  +LL+
Sbjct: 492 EHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVELGELATVRLLD 551

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
           + P +SG YVL+AN+Y + G W +   +R  M   G+ K  G + V+  + +  F V + 
Sbjct: 552 SSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVEVTDTYHTFAVGNQ 611

Query: 670 SNV 672
           S V
Sbjct: 612 SQV 614



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/463 (29%), Positives = 226/463 (48%), Gaps = 40/463 (8%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WNL+I     +GF+ + L +Y  M    + G+N TYP +LKAC  +  +  G ++H   +
Sbjct: 14  WNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHGHVL 73

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
               +   FV  ALV MY K   V  AR++FD+M +R  VSWN M+SAY+ +    +A  
Sbjct: 74  KLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALS 133

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           L  EM   G E    T+ +I  G              S + + E +L             
Sbjct: 134 LLKEMWVLGFEPTASTFVSILSG-------------YSNLDSFEFHL------------- 167

Query: 322 HVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380
                 LGK IH   ++ G      ++ N+L+ MY +   +  A  +F +  EKSII+W 
Sbjct: 168 ------LGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWT 221

Query: 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
           +M+ GY  +  A E+  LF +M    V  ++V   +++  C +V +L      H  +L+ 
Sbjct: 222 TMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKC 281

Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKL 500
              NE   + N L+ MYA+ G +  A+ +FDL+  +  +++TS+IAGY   G    AL L
Sbjct: 282 GC-NEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDL 340

Query: 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG 560
           F  M +  I+P+  T+  V+SAC+  G +  GQ + E    + G+    +    ++ +Y 
Sbjct: 341 FRRMIRTDIRPNGATLATVVSACADLGSLSIGQ-EIEEYIFLNGLESDQQVQTSLIHMYS 399

Query: 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           + G + KA+E+  ++     + +W +++ +  IH   G+G  A
Sbjct: 400 KCGSIVKAREVFERVTDKDLT-VWTSMINSYAIH---GMGNEA 438



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 3/250 (1%)

Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
           TWN +       G F   L + S M     + +++   + L AC+++ +++ G  +HG  
Sbjct: 13  TWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHGHV 72

Query: 337 VRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           ++  +     V+ AL+ MYS+C  +  A  +F    ++S+++WN+M+S Y+     +++ 
Sbjct: 73  LKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQAL 132

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQH---GKEFHCYILRRAMFNEHLLLWNSL 453
            L +EM+  G EP   T  SIL   + + + +    GK  HC +++  +    + L NSL
Sbjct: 133 SLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSL 192

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           + MY +   + EA+ VFDLM  +  +++T++I GY   G    A  LF +M    +  D 
Sbjct: 193 MGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDF 252

Query: 514 VTMVAVLSAC 523
           V  + ++S C
Sbjct: 253 VVFLNLISGC 262



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 126/255 (49%), Gaps = 6/255 (2%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL-EKNP 109
           G+  +A+  F +++  +   D V+  F ++I  C +V+ L     +H+  +  G  EK+P
Sbjct: 231 GHAVEAYGLFYQMQHQSVGIDFVV--FLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDP 288

Query: 110 VLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169
           V    L+T YA      +A  + +    +  L W  +I+ YV  G   EAL ++++M   
Sbjct: 289 V-ENLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRT 347

Query: 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVA 228
            IR +  T  +V+ AC ++  +  G+ +   I     E    V  +L+ MY K G +  A
Sbjct: 348 DIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKA 407

Query: 229 RRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE-EGVEVNVITWNTIAGGCLR 287
           R +F+++ ++D   W +MI++YA  G+  EA  LF +M   EG+  + I + ++   C  
Sbjct: 408 REVFERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSH 467

Query: 288 TGNFKGVLELLSRMR 302
           +G  +  L+    M+
Sbjct: 468 SGLVEEGLKYFKSMQ 482



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 1/152 (0%)

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           +S+ TWN M+   T+     ++  ++  M  SGV  N +T   +L  CA + ++QHG   
Sbjct: 9   RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H ++L+   F     +  +LV+MY++   V  A+ VFD M +R  V++ ++++ Y  +  
Sbjct: 69  HGHVLKLG-FQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSS 127

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
              AL L +EM     +P   T V++LS  S+
Sbjct: 128 MDQALSLLKEMWVLGFEPTASTFVSILSGYSN 159


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 295/555 (53%), Gaps = 23/555 (4%)

Query: 150 YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-- 207
           ++R G  A AL +++++   R+  D  T    +KA            +H C+     +  
Sbjct: 107 FLRAGKPAHALALFRRVLRDRLPADARTIVFAVKA--ATTSSSPAEAIH-CVAFKRGFIG 163

Query: 208 -SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
            S+ V NALV MY     +  AR+LFD+M +RD VSW T++  YA  GL  EA+++F  M
Sbjct: 164 QSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM 223

Query: 267 QEEG----VEVNVITWNTIAG--GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGAC 320
              G     EV ++   + AG  G L  G       + S +R      +++  + G   C
Sbjct: 224 VVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGC 283

Query: 321 SHVGALKLGKEI-HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
                +   KEI  G  ++  Y        ++++ Y++C DL +A  LFK    ++ ++W
Sbjct: 284 -----VASAKEIFDGMPIKDVYS-----WTSMVSAYAKCGDLENAGKLFKEIPNRNAVSW 333

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           + M++ Y+  +  EE+  +F +M  +GVEP   T+ S+L  CA++  L  G+  +   + 
Sbjct: 334 SCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIV 393

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALK 499
                  + L N+ ++M+A+ G V  A  +F  M  ++ V++ ++I  + + G+   AL 
Sbjct: 394 SHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALH 453

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559
           LF++     I PD +T + VLSACSHSGLV EG+  F+ M  +YGI P+ EH+ACM+DL 
Sbjct: 454 LFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLL 513

Query: 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619
           G+ GLL +A E+   MP     A W  LL AC++H N  IG+ AA+KL+   P +SG YV
Sbjct: 514 GKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYV 573

Query: 620 LIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYP 679
           L++ +YA+   W ++  +RT MRD GV+K PGC+ ++    F  FL  D S+  +++IY 
Sbjct: 574 LMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHEFLAADVSHAHSEDIYA 633

Query: 680 LLGGLTELMKDAGYV 694
            L  +    K  GY+
Sbjct: 634 ALENIYLHSKLEGYI 648



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 184/402 (45%), Gaps = 24/402 (5%)

Query: 40  LLETLKDFAGRGNLSKAFEAFTRI---RITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           L   ++ F   G  + A   F R+   R+ A +  +V    A          + +  + +
Sbjct: 100 LATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKA-------ATTSSSPAEAI 152

Query: 97  HACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           H  A   G     VLV   LV  YAS     +A  L +    R  + W  L+  Y R G 
Sbjct: 153 HCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGL 212

Query: 156 YAEALCVYKQMQSRRIRG----DNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLF 210
             EA  V+ +M    + G    +  T  +   A G++  +  GR+VH C +++    S+ 
Sbjct: 213 PDEAWRVFCRMV---VAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVN 269

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + NALV M+GK G V  A+ +FD M  +D  SW +M+SAYA  G  + A +LF E+    
Sbjct: 270 LENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNR- 328

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
              N ++W+ +     +    +  + + + M            V  L AC+ +G L +G+
Sbjct: 329 ---NAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGR 385

Query: 331 EIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
            ++ + +     E   N+ NA I M+++C D+  A  LF+   +K++++WN+M+  +   
Sbjct: 386 CLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALH 445

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
             +EE+  LF++    G+ P+ +T   +L  C+    +  G+
Sbjct: 446 GQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGR 487


>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Vitis vinifera]
          Length = 868

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 193/608 (31%), Positives = 309/608 (50%), Gaps = 18/608 (2%)

Query: 93  GKQLHACAIALGLE--KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           GK++H C +   +E  ++  ++  L++FY        A FL  N   R  + WN +I+ Y
Sbjct: 265 GKEVH-CHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGY 323

Query: 151 VRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEW 207
             +G + +AL ++ +  S   I+ D+ T  SVL AC  + ++   + +H  I        
Sbjct: 324 ASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLRE 383

Query: 208 SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
              V NAL+S Y K      A + F  +  +D +SWN ++ A+   G       L   M 
Sbjct: 384 DTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWML 443

Query: 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG---LGACSHVG 324
            EG+  + IT  TI          K V E  S               +G   L A +  G
Sbjct: 444 REGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCG 503

Query: 325 ALKLGKEIHGSAVRGCYGEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
            +K    I GS       E  NV   N++I+ Y        AY +F   +E  + TWN M
Sbjct: 504 NMKYAVNIFGS-----LSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLM 558

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +  Y   D  +++  LF E+   G++P+ VTI SILP CA +A++   ++ H Y++R A 
Sbjct: 559 VRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIR-AC 617

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           FN+ + L  + ++MY++ G V  A  +F    ++D V +T+++ G+ + G G  AL++F 
Sbjct: 618 FND-VRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFS 676

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M +  +KPDHV + AVL ACSH+GLV EG K F  +  ++G  P +E +AC+VDL  R 
Sbjct: 677 YMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARG 736

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G +  A   +T+MP    + +W TLLGAC+ H    +G   A+ L +   +N G YV+++
Sbjct: 737 GRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMS 796

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682
           N+YAA   WD + ++R  MR   ++K  GC+W++ G   + F+  D+S+ Q   IY  L 
Sbjct: 797 NLYAADARWDGVMEIRRLMRTRELKKPAGCSWIEVGRRKNVFIAGDSSHPQRSIIYRTLS 856

Query: 683 GLTELMKD 690
            L +LMK+
Sbjct: 857 TLDQLMKE 864



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 155/574 (27%), Positives = 255/574 (44%), Gaps = 92/574 (16%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  C +++  A GK +H+  I  GLE + +    L++ YA   L  +  +   N 
Sbjct: 144 TIAIVLPVCARLREDA-GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNR 202

Query: 136 -NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD---V 191
              +  + WN +I+ +  + F  EA  ++  M    I+ +  T  S+L  C  + +    
Sbjct: 203 IEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGY 262

Query: 192 DFGRVVHSCIDACHEW-------SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
            +G+ VH     CH          + V N+L+S Y + GQ++ A  LF  M  RD VSWN
Sbjct: 263 RYGKEVH-----CHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWN 317

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            +I+ YAS G W +A +LF E          I+  TI                       
Sbjct: 318 AIIAGYASNGEWLKALELFSEF---------ISLETIKP--------------------- 347

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRH 363
               DSV  V  L AC+HV  L++ K IHG  +R     E  +V NAL++ Y++C   + 
Sbjct: 348 ----DSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQA 403

Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
           A   F M + K +I+WN++L  +T   C      L   M R G+ P+ +TI +I+   A 
Sbjct: 404 ALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAA 463

Query: 424 VANLQHGKEFHCYILRRAMF--NEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVT 480
           V+ ++  KE H Y +R  +   +    L N +++ YA+ G +  A ++F  +S +R+ VT
Sbjct: 464 VSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVT 523

Query: 481 YTSLIAGY----------------------------GIQGEGRV---ALKLFEEMNKNQI 509
             S+I+GY                             +  E      AL LF E+    +
Sbjct: 524 CNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGM 583

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           KPD VT++++L AC+H    V   +Q      I   F  +      +D+Y + G +  A 
Sbjct: 584 KPDIVTIMSILPACAHMA-SVHMLRQCHGYV-IRACFNDVRLNGAFIDMYSKCGSVFGAY 641

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           ++    P      M+  ++G   +H   G+GE A
Sbjct: 642 KLFLSSPQKDL-VMFTAMVGGFAMH---GMGEEA 671



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 179/361 (49%), Gaps = 58/361 (16%)

Query: 180 SVLKACGEMMDVDFGRVVH---------SCIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
           ++LK+C  +  + FG V+H         SC   C          L+++Y K G +D   +
Sbjct: 44  ALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLC--------KGLLNLYAKSGALDYCNK 95

Query: 231 LFDKMLERDAVSWNTMISAYAS-KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           LF +M +RD V WN ++S  A  +    E  +LF  M                       
Sbjct: 96  LFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMH---------------------- 133

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                          E   +SV   I L  C+ +     GK +H   ++     +    N
Sbjct: 134 ------------MVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGN 180

Query: 350 ALITMYSRCKDL-RHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
           ALI+MY++C  +   AY  F     K +++WN++++G++     EE+  LF  M +  ++
Sbjct: 181 ALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQ 240

Query: 409 PNYVTIASILPLCARV---ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           PNY TIASILP+CA +   A  ++GKE HC++LRR    E + + NSL+  Y R G++ +
Sbjct: 241 PNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEK 300

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE-MNKNQIKPDHVTMVAVLSACS 524
           A+ +F  M  RD V++ ++IAGY   GE   AL+LF E ++   IKPD VT+V+VL AC+
Sbjct: 301 AEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACA 360

Query: 525 H 525
           H
Sbjct: 361 H 361



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 228/509 (44%), Gaps = 45/509 (8%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
            A ++  C  + A+  G  LH  A+ LG      L   L+  YA     +    L    +
Sbjct: 42  LAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLCKGLLNLYAKSGALDYCNKLFGEMD 101

Query: 137 IRYPLPWNLLIS-LYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFG 194
            R P+ WN+++S L       AE + +++ M      + ++ T   VL  C  + + D G
Sbjct: 102 QRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAG 160

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQV-DVARRLFDKMLERDAVSWNTMISAYAS 252
           + VHS  I +  E      NAL+SMY K G V   A   F+++  +D VSWN +I+ ++ 
Sbjct: 161 KSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSE 220

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
               +EAF+LF  M +  ++ N   + TIA           +L + + +     Y     
Sbjct: 221 NKFTEEAFKLFHAMLKGPIQPN---YATIA----------SILPVCASLEENAGY----- 262

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGC-YGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                         + GKE+H   +R     E  +V N+L++ Y R   +  A  LF+  
Sbjct: 263 --------------RYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNM 308

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHG 430
             + +++WN++++GY       ++  LF E      ++P+ VT+ S+LP CA V NLQ  
Sbjct: 309 KSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVA 368

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H YI+R     E   + N+L+  YA+      A   F ++SR+D +++ +++  +  
Sbjct: 369 KGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTE 428

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVL---SACSHSGLVVEGQKQFERMTSIYG-IF 546
            G     + L   M +  I+PD +T++ ++   +A S    V E      R   + G   
Sbjct: 429 SGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAG 488

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           P L +   M+D Y + G +  A  I   +
Sbjct: 489 PTLGN--GMLDAYAKCGNMKYAVNIFGSL 515



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 393 EESAFLFREMFRS--GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
           +E+  LF E  R   G +PN   +A++L  C  ++ ++ G   H Y L+    +   L  
Sbjct: 19  DEALSLFLERVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLC- 77

Query: 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY-GIQGEGRVALKLFEEMNK-NQ 508
             L+ +YA+SG +     +F  M +RD V +  +++G  G Q      ++LF  M+  N+
Sbjct: 78  KGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNE 137

Query: 509 IKPDHVTMVAVLSACS 524
            KP+ VT+  VL  C+
Sbjct: 138 AKPNSVTIAIVLPVCA 153


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 161/438 (36%), Positives = 253/438 (57%), Gaps = 6/438 (1%)

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE-TYLDSVATVIGL 317
           A ++F ++++    +NV  WNT+  G    GN      L   MR       D+      +
Sbjct: 72  AHKVFSKIEKP---INVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            A + +  ++LG+ IH   +R  +G    V+N+L+ +Y+ C D+  AY +F    EK ++
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            WNS+++G+      EE+  L+ EM   G++P+  TI S+L  CA++  L  GK  H Y+
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           ++  +   +L   N L+++YAR G+V EAK++FD M  ++ V++TSLI G  + G G+ A
Sbjct: 249 IKVGL-TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307

Query: 498 LKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           ++LF+ M   + + P  +T V +L ACSH G+V EG + F RM   Y I P++EHF CMV
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMV 367

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL  RAG + KA E I  MP  P   +W TLLGAC +H ++ + E+A  ++L+  P +SG
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSG 427

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YVL++NMYA+   W  + K+R  M   GV+K+PG + V+ GN    FL+ D S+ Q+  
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDA 487

Query: 677 IYPLLGGLTELMKDAGYV 694
           IY  L  +T  ++  GYV
Sbjct: 488 IYAKLKEMTGRLRSEGYV 505



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 207/449 (46%), Gaps = 56/449 (12%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL-------YNNACFLVENSNIRY 139
           V ++ + +Q+HA +I  G+  +   + K + FY   SL       Y +  F    S I  
Sbjct: 27  VSSITKLRQIHAFSIRHGVSISDAELGKHLIFYL-VSLPSPPPMSYAHKVF----SKIEK 81

Query: 140 PLP---WNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           P+    WN LI  Y   G    A  +Y++M+ S  +  D  TYP ++KA   M DV  G 
Sbjct: 82  PINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGE 141

Query: 196 VVHSCIDACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS +      SL +V N+L+ +Y   G V  A ++FDKM E+D V+WN++I+ +A  G
Sbjct: 142 TIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG 201

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA  L+ EM  +G++ +  T                ++ LLS               
Sbjct: 202 KPEEALALYTEMNSKGIKPDGFT----------------IVSLLS--------------- 230

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
               AC+ +GAL LGK +H   ++       +  N L+ +Y+RC  +  A  LF    +K
Sbjct: 231 ----ACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK 286

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQHGKEF 433
           + ++W S++ G       +E+  LF+ M  + G+ P  +T   IL  C+    ++ G E+
Sbjct: 287 NSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEY 346

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSLIAGYGIQG 492
              +         +  +  +V++ AR+G+V +A      M  +  V  + +L+    + G
Sbjct: 347 FRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           +  +A   F  +   Q++P+H     +LS
Sbjct: 407 DSDLA--EFARIQILQLEPNHSGDYVLLS 433



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 93/256 (36%), Gaps = 49/256 (19%)

Query: 43  TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFA--HIIFCCGKVKALAQGKQLHACA 100
            +  FA  G   +A   +T +     S  +  D F    ++  C K+ AL  GK++H   
Sbjct: 193 VINGFAENGKPEEALALYTEMN----SKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
           I +GL +N      L+  YA       A  L +    +  + W  LI     +GF  EA+
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAI 308

Query: 161 CVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMY 219
            ++K M+S   +     T+  +L AC              C                   
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSH------------C------------------- 337

Query: 220 GKFGQVDVARRLFDKMLERDAVS-----WNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
              G V      F +M E   +      +  M+   A  G  K+A++    M    ++ N
Sbjct: 338 ---GMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP---MQPN 391

Query: 275 VITWNTIAGGCLRTGN 290
           V+ W T+ G C   G+
Sbjct: 392 VVIWRTLLGACTVHGD 407


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 173/607 (28%), Positives = 308/607 (50%), Gaps = 42/607 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  ++  C K+ +L    +LH+  +  G + +  +   LV  Y+    +++A  + +  
Sbjct: 30  TFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSARLVFDQM 89

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            I+  + WN +IS + RD    ++  + KQMQ   +   + T+   L +C     +  G 
Sbjct: 90  PIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASC----SLPQGL 145

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  I     +  L + N+++SMY +  Q+D A  +F  + ++                
Sbjct: 146 SIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQK---------------- 189

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
                              ++++W  I GG L  G+   V  + ++MR Q    DS+  V
Sbjct: 190 -------------------SIVSWTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFV 230

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             +  C   G L L   +H   ++  +   + + N L+ MY++CKDL  A  +F    EK
Sbjct: 231 NLISCCKLSGNLLLAMLVHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEK 290

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           S+  W SM+SGY       E+  LF  + R+   PN +T+A++L  CA + +L+ G+E  
Sbjct: 291 SVFLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIE 350

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            YIL   + ++ L +  SL+ M+ + G + +A+++F+ +  +D   ++++I GY + G G
Sbjct: 351 QYILLNGLGSD-LRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMG 409

Query: 495 RVALKLFEEM-NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
           + AL LF +M N+  IKPD +   +VL ACSHSGL+ +G K F  M   +GI P ++H++
Sbjct: 410 KEALNLFHKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYS 469

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           C+VDL GRAG +  A   I +MP    + +WA  L AC  H N  +GE+AA+ L +  P 
Sbjct: 470 CLVDLLGRAGYVELALRTIQEMPVLVQARVWAPFLSACYTHHNLELGEFAAKNLFDLEPR 529

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           ++G +VL+ N+Y + G W + AK R+ +   G+ K PG + ++          +  S+++
Sbjct: 530 STGNFVLMTNLYTSMGKWKEAAKARSIINARGLVKEPGWSQIEIDGAVHVLAAEGQSHLE 589

Query: 674 AQEIYPL 680
           + +I+ L
Sbjct: 590 SIDIHEL 596



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 221/498 (44%), Gaps = 57/498 (11%)

Query: 162 VYKQMQSRR-----IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNAL 215
           ++KQ+ S       + G  FT+P VLKAC ++  ++    +HS I     +  +FV  AL
Sbjct: 10  IFKQIPSLSSHTSGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTAL 69

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
           V +Y K      AR +FD+M  +  VSWN++ISA+       ++F +  +MQ  G+E   
Sbjct: 70  VDVYSKCCCFHSARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLE--- 126

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
                     L +  F G                       L +CS    L  G  IHG 
Sbjct: 127 ----------LSSATFTGF----------------------LASCS----LPQGLSIHGY 150

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
             +     +  + N++++MY R   +  A  +F    +KSI++W  +L GY       + 
Sbjct: 151 ITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYLSAGDVAKV 210

Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
             +F +M    V P+ +   +++  C    NL      H  +L+   F+    + N LV 
Sbjct: 211 FAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSG-FDHKDPIDNLLVA 269

Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
           MYA+   +  A+ VFD +  +    +TS+I+GY   G    AL LF  + +   +P+ +T
Sbjct: 270 MYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELT 329

Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
           +  VLSAC+  G +  G+ + E+   + G+   L     ++ ++ + G + KA+ +  ++
Sbjct: 330 LATVLSACAEMGSLRMGE-EIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERI 388

Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWA------AEKLLETRPENSGYYVLIANMYAATG 629
           P     A+W+ ++    +H   G+G+ A       +  +  +P+   Y  ++     +  
Sbjct: 389 P-NKDLAVWSAMINGYAVH---GMGKEALNLFHKMQNEVGIKPDAIVYTSVLLACSHSGL 444

Query: 630 CWDKLAKVRTCMRDLGVR 647
             D L   R+  +D G+ 
Sbjct: 445 IEDGLKYFRSMQKDFGIE 462



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 121/261 (46%), Gaps = 4/261 (1%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  +   G+++K F  F ++R      D ++  F ++I CC     L     +H+  +  
Sbjct: 198 LGGYLSAGDVAKVFAVFNQMRCQCVGPDSIV--FVNLISCCKLSGNLLLAMLVHSLLLKS 255

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G +    +   LV  YA      +A  + +  + +    W  +IS Y + G+  EAL ++
Sbjct: 256 GFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLF 315

Query: 164 KQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKF 222
             +     R +  T  +VL AC EM  +  G  +   I      S L V  +L+ M+ K 
Sbjct: 316 NMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKC 375

Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE-GVEVNVITWNTI 281
           G +  A+ LF+++  +D   W+ MI+ YA  G+ KEA  LF +MQ E G++ + I + ++
Sbjct: 376 GSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVYTSV 435

Query: 282 AGGCLRTGNFKGVLELLSRMR 302
              C  +G  +  L+    M+
Sbjct: 436 LLACSHSGLIEDGLKYFRSMQ 456



 Score = 43.1 bits (100), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 6/210 (2%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  +A  G  ++A   F  +  TA+  + +  + A ++  C ++ +L  G+++    +  
Sbjct: 299 ISGYAQFGYPNEALHLFNMLLRTASRPNEL--TLATVLSACAEMGSLRMGEEIEQYILLN 356

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           GL  +  +   L+  +        A  L E    +    W+ +I+ Y   G   EAL ++
Sbjct: 357 GLGSDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLF 416

Query: 164 KQMQSR-RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI--DACHEWSLFVHNALVSMYG 220
            +MQ+   I+ D   Y SVL AC     ++ G      +  D   E S+  ++ LV + G
Sbjct: 417 HKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLG 476

Query: 221 KFGQVDVARRLFDKM-LERDAVSWNTMISA 249
           + G V++A R   +M +   A  W   +SA
Sbjct: 477 RAGYVELALRTIQEMPVLVQARVWAPFLSA 506


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 190/628 (30%), Positives = 325/628 (51%), Gaps = 61/628 (9%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+Q+H+  I +G  +N      L+  YA      +A     + +    + WN +I+ Y +
Sbjct: 118 GQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQ 177

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF--------GRVVHSCIDAC 204
            G    A  +   M+    + D+ TY  +L     + D DF        G+++   ++  
Sbjct: 178 AGDRETAFWLLDCMEQEGEKVDDGTYAPLLPL---LDDADFCNLTSQLHGKIIKHGLELV 234

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLF 263
           +     + NAL++ Y K G +D A+R+FD     RD V+WN++++AY  +     AF+L 
Sbjct: 235 NT----MCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLL 290

Query: 264 VEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323
           ++MQE G E ++ ++ +I                                   + AC + 
Sbjct: 291 IDMQEHGFEPDLYSYTSI-----------------------------------ISACFNE 315

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMY--SRCKDLRHAYILFKMTAEKSIITWNS 381
                G+ +HG  ++  + +   + NALI+MY  S    ++ A  +F+    K  ++WNS
Sbjct: 316 NISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNS 375

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           +L+G +    +E++   F  M  + ++ ++ + +++L  C+ +A  Q G++ H   L+  
Sbjct: 376 ILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYG 435

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
           + +   +  +SL+ MY++ G + +A+  F+  S+   +T+ +L+ GY   G+  VAL LF
Sbjct: 436 LESNEFVS-SSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLF 494

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
             M   ++K DH+T VAVL+ACSH GLV +G K    M S YG+ P++EH+AC VDLYGR
Sbjct: 495 FLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGR 554

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           +G L +AK +I +MP+ P + +W T LGAC+   N  +    A  LLE  PE    YVL+
Sbjct: 555 SGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLL 614

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           +NMY     WD+ AKV+  M++ GV+K+PG +W++  N    F+  D S+   Q+IY LL
Sbjct: 615 SNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLL 674

Query: 682 GGLTE---LMKDA-GYVVKEEFCSEEEI 705
             L E    M+DA G+   + F  +EE+
Sbjct: 675 EVLLEEITRMEDADGF---KSFLEQEEL 699



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 148/296 (50%), Gaps = 6/296 (2%)

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           D  + N +++ Y      + A  LF EM       + ++WNT+  G +  GN +   ++L
Sbjct: 32  DVYTCNNILNGYWKCKELRSADVLFDEMPMR----DSVSWNTMIAGHINCGNLEASWDVL 87

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
             MR+    LD       L   +  G   LG+++H   ++  Y E     +AL+ MY++C
Sbjct: 88  RCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKC 147

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
           + L  AY+ F   ++ + ++WN+M++GY      E + +L   M + G + +  T A +L
Sbjct: 148 EKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLL 207

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RD 477
           PL           + H  I++  +   + +  N+L+  Y++ G + +AK +FD  +  RD
Sbjct: 208 PLLDDADFCNLTSQLHGKIIKHGLELVNTMC-NALITSYSKCGSLDDAKRIFDSSAGIRD 266

Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
            VT+ SL+A Y ++ +  +A KL  +M ++  +PD  +  +++SAC +  +   G+
Sbjct: 267 LVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGR 322



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 108/219 (49%), Gaps = 3/219 (1%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY--ASFSLYNNACFL 131
           L S+  II  C        G+ LH   I  G E++  +   L++ Y  + +     A  +
Sbjct: 302 LYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCI 361

Query: 132 VENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
            E+   +  + WN +++   + G   +A+  +  M+S  +  D++++ +VL++C ++   
Sbjct: 362 FESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATF 421

Query: 192 DFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAY 250
             G+ +H   +    E + FV ++L+ MY K G ++ ARR F++  +  +++WN ++  Y
Sbjct: 422 QLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGY 481

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           A  G    A  LF  M+ + V+++ IT+  +   C   G
Sbjct: 482 AQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIG 520



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 117/239 (48%), Gaps = 8/239 (3%)

Query: 37  RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQL 96
           R++    L   +  G+   A ++F  +R  +A+ D+   SF+ ++  C  +     G+Q+
Sbjct: 370 RVSWNSILTGLSQTGSSEDAVKSFLHMR--SAAMDIDHYSFSAVLRSCSDLATFQLGQQI 427

Query: 97  HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
           H  A+  GLE N  +   L+  Y+   +  +A    E ++    + WN L+  Y + G  
Sbjct: 428 HVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQC 487

Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWSLFVHNA 214
             AL ++  M+ ++++ D+ T+ +VL AC  +  V+ G     C+++ +     +  +  
Sbjct: 488 NVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYAC 547

Query: 215 LVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQL---FVEMQEE 269
            V +YG+ G+++ A+ L ++M  + D   W T + A  S G  + A Q+    +EM+ E
Sbjct: 548 AVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPE 606


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 187/620 (30%), Positives = 315/620 (50%), Gaps = 109/620 (17%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRR-------IRG---------------------- 173
           WN+L+++YV+  F  +A  ++ +M  R        I+G                      
Sbjct: 76  WNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGH 135

Query: 174 --DNFTYPSVLK-----ACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQV 225
             + F + ++LK      CGE+     G  +H+CI    HE + FV  AL+  Y   G+V
Sbjct: 136 ELNPFVFTTILKLLVSTDCGEL-----GWGIHACIFKLGHESNAFVGTALIDAYSVCGRV 190

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           DVAR +FD +L +D VSW  M++ +A    +KEA +LF +M+  G + N  T+ ++    
Sbjct: 191 DVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASV---- 246

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                FK                          AC  + A  +GK +HG A++  Y    
Sbjct: 247 -----FK--------------------------ACLGLEAFDVGKSVHGCALKSRYELDL 275

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V  AL+ +Y++  D+  A   F+   +K +I W+ M++ Y   D ++E+  +F +M ++
Sbjct: 276 YVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQA 335

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
            V PN  T AS+L  CA +  L  G + HC++++  + ++ + + N+L+++YA+ G++  
Sbjct: 336 LVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSD-VFVSNALMDVYAKCGRMEN 394

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM--------------------- 504
           +  +F     R++VT+ ++I G+   G+G  AL+LF  M                     
Sbjct: 395 SMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACAS 454

Query: 505 ----------NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
                     +   +KPD +T V VLSAC+++GL+ +GQ  F  M   +GI P +EH+ C
Sbjct: 455 LAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTC 514

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MV L GR G L+KA ++I ++P+ P+  +W  LLGAC IH +  +G  +A+++LE  P++
Sbjct: 515 MVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQD 574

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
              +VL++NMYA    WD +A VR  M+  GV+K PG +W+++      F V DTS+ + 
Sbjct: 575 KATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEV 634

Query: 675 QEIYPLLGGLTELMKDAGYV 694
           + I  +L  L    K AGY+
Sbjct: 635 RVINGMLEWLHMKTKKAGYI 654



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 202/443 (45%), Gaps = 56/443 (12%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVH-------SCIDACHEWSLFVHNALVSMYGKFGQVD 226
           ++  Y + L+ C +  +   G+ +H        C+D      LF  N L++MY K   + 
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLD------LFAWNILLNMYVKSDFLC 90

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A +LFD+M ER+ +S+ T+I  YA    + EA +LFV +  EG E+N   + TI     
Sbjct: 91  DASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTI----- 145

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                   L+LL            V+T  G LG   H    KLG E +            
Sbjct: 146 --------LKLL------------VSTDCGELGWGIHACIFKLGHESNAF---------- 175

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V  ALI  YS C  +  A  +F     K +++W  M++ +   DC +E+  LF +M   
Sbjct: 176 -VGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMV 234

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           G +PN  T AS+   C  +     GK  H   L ++ +   L +  +L+++Y +SG + +
Sbjct: 235 GFKPNNFTFASVFKACLGLEAFDVGKSVHGCAL-KSRYELDLYVGVALLDLYTKSGDIDD 293

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
           A+  F+ + ++D + ++ +IA Y    + + A+++F +M +  + P+  T  +VL AC+ 
Sbjct: 294 ARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACAT 353

Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
              +  G +    +  I G+   +     ++D+Y + G +  + E+  + P+      W 
Sbjct: 354 MEGLNLGNQIHCHVIKI-GLHSDVFVSNALMDVYAKCGRMENSMELFAESPHR-NDVTWN 411

Query: 586 TLLGACQIHRNTGIGEWAAEKLL 608
           T++     H   G GE A    L
Sbjct: 412 TVIVG---HVQLGDGEKALRLFL 431



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 158/349 (45%), Gaps = 27/349 (7%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA      +A + F+++R+     +    +FA +   C  ++A   GK +H CA+    E
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNF--TFASVFKACLGLEAFDVGKSVHGCALKSRYE 272

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
            +  +   L+  Y      ++A    E    +  +PW+ +I+ Y +     EA+ ++ QM
Sbjct: 273 LDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQM 332

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH------EWSLFVHNALVSMYG 220
           +   +  + FT+ SVL+AC  M  ++ G  +H     CH         +FV NAL+ +Y 
Sbjct: 333 RQALVLPNQFTFASVLQACATMEGLNLGNQIH-----CHVIKIGLHSDVFVSNALMDVYA 387

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K G+++ +  LF +   R+ V+WNT+I  +   G  ++A +LF+ M E  V+   +T+++
Sbjct: 388 KCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSS 447

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE-----IHGS 335
               C      +  L++ S         D +  V  L AC++ G L  G+      I   
Sbjct: 448 ALRACASLAALEPGLQIHSLTVKP----DKLTFVGVLSACANAGLLDQGQAYFTSMIQDH 503

Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILF-KMTAEKSIITWNSML 383
            +  C   Y      ++ +  R   L  A  L  ++  + S++ W ++L
Sbjct: 504 GIEPCIEHY----TCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALL 548



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 28/261 (10%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++  C  ++ L  G Q+H   I +GL  +  +   L+  YA      N+  L   S
Sbjct: 343 TFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAES 402

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I  +V+ G   +AL ++  M   R++    TY S L+AC  +  ++ G 
Sbjct: 403 PHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGL 462

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS-----WNTMISAY 250
            +HS      + +      ++S     G +D  +  F  M++   +      +  M+   
Sbjct: 463 QIHSLTVKPDKLTFV---GVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLL 519

Query: 251 ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF-------KGVLE------- 296
              G   +A +L  E+     + +V+ W  + G C+   +        + VLE       
Sbjct: 520 GRGGHLDKAVKLIDEIP---FQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKA 576

Query: 297 ---LLSRMRTQETYLDSVATV 314
              LLS M       D+VA+V
Sbjct: 577 THVLLSNMYATAKRWDNVASV 597



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 22/213 (10%)

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP---NYVTIASILPLCARVANLQHGKE 432
           ++  N+ L  ++    + +SA L +E F   V P   N    A+ L  C +      GK 
Sbjct: 1   MVCRNNFLIQFSRRGFSVQSAKLTQE-FVGHVSPSEFNSHAYANALQDCIQKDEPSRGKG 59

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            HC IL+R    + L  WN L+ MY +S  + +A  +FD M  R+ +++ +LI GY    
Sbjct: 60  LHCEILKRGGCLD-LFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESV 118

Query: 493 EGRVALKLFEEMNK--NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
               A++LF  +++  +++ P   T +  L   +  G +  G         I+    +L 
Sbjct: 119 RFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWG---------IHACIFKLG 169

Query: 551 HFA------CMVDLYGRAGLLNKAKEIITKMPY 577
           H +       ++D Y   G ++ A+E+   + Y
Sbjct: 170 HESNAFVGTALIDAYSVCGRVDVAREVFDGILY 202


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 180/626 (28%), Positives = 319/626 (50%), Gaps = 47/626 (7%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK-LVTFYASFSLYNNACFLVEN 134
           +F  ++ CC ++ AL +G+  H+ AI LG+    V     L+ FYA   L ++A  + + 
Sbjct: 110 TFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDG 169

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQM-QSRRIRGDNFTYPSVLKACGEMMDVDF 193
              R  + WN ++  YV +G    AL  +++M ++  ++ D     + L AC     +  
Sbjct: 170 MPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESALMQ 229

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           GR VH+  I    E  + V  +++ MY K G +  A  +F  M  R              
Sbjct: 230 GREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSR-------------- 275

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
                                 V+TWN + GG       +   +   +M+ +   ++ V 
Sbjct: 276 ---------------------TVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVT 314

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
            +  L AC+   +   G+ +HG   R  +  +  +  AL+ MYS+   ++ +  +F    
Sbjct: 315 AINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMT 374

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
            K++++WN+M++ Y + +   E+  LF ++    + P+Y T+++++P    +  L+  ++
Sbjct: 375 TKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQ 434

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQG 492
            H YI+R   + E+ L+ N+++ MYAR G V  ++ +FD M+ +D +++ ++I GY I G
Sbjct: 435 MHSYIIRLG-YGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHG 493

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
           +GR AL++F EM  N ++P+  T V+VL+ACS SGL  EG  QF  M   YG+ PQ+EH+
Sbjct: 494 QGRSALEMFSEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHY 553

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            CM DL GRAG L +  + I  MP  PT  +W +LL A +   +  I E+AAE++ +   
Sbjct: 554 GCMTDLLGRAGDLKEVMQFIENMPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQ 613

Query: 613 -----ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667
                +N+G YVLI++MYA  G W  + ++++ M + G+R+    + V+   +   F+  
Sbjct: 614 DQLEHDNTGCYVLISSMYADAGRWKDVERIKSLMEEKGLRRTDPRSIVELHGISCSFVNG 673

Query: 668 DTSNVQA---QEIYPLLGGLTELMKD 690
           DT++ Q+   QE+   L G    M+D
Sbjct: 674 DTTHPQSKMIQEVSNFLSGKIGEMRD 699



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/483 (28%), Positives = 218/483 (45%), Gaps = 49/483 (10%)

Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCID--ACHEWSLFVHNALVSMYGKFGQVDVAR 229
           R D FT+P VLK C  +  +D GR  HS           ++  N+L++ Y + G VD A 
Sbjct: 105 RPDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAE 164

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           R+FD M  RD V+WN+M+  Y S GL   A   F EM E                     
Sbjct: 165 RVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHE--------------------- 203

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
                          E   D V  +  L AC    AL  G+E+H   +R        V  
Sbjct: 204 -------------ALEVQHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVGT 250

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           +++ MY +C D+  A  +F     ++++TWN M+ GY   +  EE+   F +M   G + 
Sbjct: 251 SILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQV 310

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
             VT  ++L  CA+  +  +G+  H YI RR  F  H++L  +L+EMY++ GKV  ++ V
Sbjct: 311 EVVTAINLLAACAQTESSLYGRSVHGYITRR-QFLPHVVLETALLEMYSKVGKVKSSEKV 369

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           F  M+ +  V++ ++IA Y  +     A+ LF ++    + PD+ TM AV+ A    GL+
Sbjct: 370 FGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLL 429

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            + ++    +  + G          ++ +Y R G +  ++EI  KM      + W T++ 
Sbjct: 430 RQCRQMHSYIIRL-GYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVIS-WNTMIM 487

Query: 590 ACQIHRNTGIGEWAAEKLLET-----RPENSGYYVLIANMYAATGCWDK-LAKVRTCMRD 643
              IH   G G  A E   E      RP N   +V +    + +G  D+   +  +  RD
Sbjct: 488 GYAIH---GQGRSALEMFSEMKCNGLRP-NESTFVSVLTACSVSGLTDEGWTQFNSMQRD 543

Query: 644 LGV 646
            G+
Sbjct: 544 YGM 546


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 285/559 (50%), Gaps = 39/559 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  +I  C  +  L  G  +H  A+  G   N  +   L+  Y +      A  +    
Sbjct: 186 TFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVM 245

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +IS + ++G   EAL V+  M   R+  D+ T  S L +CG + +++ G 
Sbjct: 246 LKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGI 305

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH  +   H +  + V NALV MY + G +D                            
Sbjct: 306 KVHKLVQKNHLQEKIEVRNALVDMYSRCGGMD---------------------------- 337

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  +F E +E+    +VITW ++  G +  GN K  L L   M+      ++V   
Sbjct: 338 ---EASLVFAETKEK----DVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLA 390

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+ +  LK GK +H   +R        V  ALI MY++C  + +++ +F  T+ K
Sbjct: 391 SLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMK 450

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             + WN++LSG  H + A E+  LF+ M    VE N+ T  S++P  A +A+L+     H
Sbjct: 451 RTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLH 510

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM--SRRDEVTYTSLIAGYGIQG 492
            Y++R   F   + +   L++MY++ G +  A  +FD +    +D + ++ LIAGYG+ G
Sbjct: 511 SYLVRSG-FISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHG 569

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552
            G  A+ LF +M  + ++P+ +T  +VL ACSH GLV +G   F+ M   Y   P   H+
Sbjct: 570 HGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHY 629

Query: 553 ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612
            C+VDL GRAG L++A ++I  MP+    ++W  LLGAC IH+N  +GE AAE+L E  P
Sbjct: 630 TCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEP 689

Query: 613 ENSGYYVLIANMYAATGCW 631
           E++G Y+L+AN+YAA G W
Sbjct: 690 ESTGNYILLANIYAAVGRW 708



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/525 (28%), Positives = 253/525 (48%), Gaps = 52/525 (9%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLV---PKLVTFYASFSLYNNACFLVENSNIRYPLPWN 144
           ++L + K LH   I  GL  +P  +     L   YA       A  L ++ +      WN
Sbjct: 93  RSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWN 152

Query: 145 LLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
            +I +YV  GF+ +AL V+  M  S +   D +T+P V+KAC  M  ++ G ++H   + 
Sbjct: 153 AIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALV 212

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           +    ++FV N+L++MY   G+V +AR++F+ ML+R                        
Sbjct: 213 SGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKR------------------------ 248

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
                      +V++WNT+  G  + G  +  L + + M       DS   V  L +C H
Sbjct: 249 -----------SVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGH 297

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +  L+LG ++H    +    E   VRNAL+ MYSRC  +  A ++F  T EK +ITW SM
Sbjct: 298 LKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSM 357

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++GY     A+ +  L   M   GV PN VT+AS+L  CA +  L+ GK  H +++R+ +
Sbjct: 358 INGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKL 417

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            +  +L+  +L++MYA+   V  +  VF   S +  V + +L++G       R A+ LF+
Sbjct: 418 -DSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFK 476

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY---GIFPQLEHFACMVDLY 559
            M   +++ +H T  +V+ A +    ++   KQ   + S     G   ++     ++D+Y
Sbjct: 477 SMLIEEVEANHATFNSVIPAYA----ILADLKQVMNLHSYLVRSGFISKIAVITGLIDMY 532

Query: 560 GRAGLLNKAKEIITKMPYTPTSAM-WATLLGACQIHRNTGIGEWA 603
            + G L+ A +I  ++P      + W+ L+    +H   G GE A
Sbjct: 533 SKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMH---GHGETA 574


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 175/563 (31%), Positives = 297/563 (52%), Gaps = 19/563 (3%)

Query: 139 YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF--TYPSVLKACGEMMDVDFGRV 196
           +P  W   I +    G +  A+ ++ QM++      +   + P+ LK+C  +        
Sbjct: 328 FPPSWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAAS 387

Query: 197 VHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           +H+  I +      F  NAL+++  K          F      +  S           GL
Sbjct: 388 LHALAIRSGSFADRFTANALLNLCIKLPG-------FHHPFGTNGPS--------GEGGL 432

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
              A++   ++ +E +E + ++WNT+  GC      +  L ++  M       D+     
Sbjct: 433 ESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLST 492

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375
            L   +    +K G  +HG A++  +     V ++LI MY+ C  + ++  +F   ++  
Sbjct: 493 VLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCD 552

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
            + WNSML+GY      EE+  +FR M ++GV P  VT +S++P    ++ L+ GK+ H 
Sbjct: 553 AVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHA 612

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
           Y++R A FN+++ + +SL++MY + G V  A+ VF+ +   D V++T++I GY + G   
Sbjct: 613 YLIR-ARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTT 671

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            A  LFE M    +KP+H+T +AVL+ACSH+GLV  G K F  M++ YG  P LEH A +
Sbjct: 672 EAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAAL 731

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
            D  GRAG L++A   I++M   PTS++W+TLL AC++H+NT + E  A+K+ E  P++ 
Sbjct: 732 ADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSM 791

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G +V+++NMY+A+G W++ A++R  MR  G++K P C+W++  N    F+  D S+    
Sbjct: 792 GSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYD 851

Query: 676 EIYPLLGGLTELMKDAGYVVKEE 698
            I   L   +E M   GYV   E
Sbjct: 852 RIIDALNVYSEQMIRQGYVPNME 874



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 182/440 (41%), Gaps = 56/440 (12%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG--- 104
           A +G    A   F ++R + A    V  S    +  C  +        LHA AI  G   
Sbjct: 340 ASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFA 399

Query: 105 --LEKNPVL--VPKLVTFYASF-------------SLYNNACFLVENSNIRYPLPWNLLI 147
                N +L    KL  F+  F             + Y +   + +    R  + WN LI
Sbjct: 400 DRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLI 459

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHE 206
                   + EAL + ++M       D FT  +VL    E  D+  G VVH   I    +
Sbjct: 460 LGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFD 519

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
             +FV ++L+ MY    Q+D + ++FD   + DAV WN+M++ YA  G  +EA  +F  M
Sbjct: 520 NDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRM 579

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
            + GV    +T++++                                   + A  ++  L
Sbjct: 580 LQAGVRPVPVTFSSL-----------------------------------IPAFGNLSLL 604

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
           +LGK++H   +R  + +   + ++LI MY +C ++  A  +F       I++W +M+ GY
Sbjct: 605 RLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGY 664

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                  E+  LF  M    V+PN++T  ++L  C+    + +G ++   +  +  F   
Sbjct: 665 ALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPS 724

Query: 447 LLLWNSLVEMYARSGKVPEA 466
           L    +L +   R+G + EA
Sbjct: 725 LEHCAALADTLGRAGDLDEA 744


>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Brachypodium distachyon]
          Length = 689

 Score =  305 bits (780), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 190/617 (30%), Positives = 309/617 (50%), Gaps = 50/617 (8%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
           A G QL + A   GL  N      L+  YA      +A  + +    R  + WN LI+ Y
Sbjct: 108 ALGAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGY 167

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE----MMDVDFGRVVHSCIDACHE 206
           V  G   +AL ++  M++ R+  D  T+ ++L A  +    +M    G++V         
Sbjct: 168 VESGKVLQALELFINMETERLVPDEATFAALLTAFDDSNYFLMHQLHGKIV----KYGSA 223

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVE 265
             L V NA ++ Y + G +  +RR+FD++ + RD +SWN M+ AY   G+  +A   FV 
Sbjct: 224 LGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLGAYTYHGMDYDAMGFFVR 283

Query: 266 M-QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
           M +E GV++++ ++ +I   C    + +G                               
Sbjct: 284 MIRESGVQLDMYSFTSIISTCPEHDDHQG------------------------------- 312

Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD---LRHAYILFKMTAEKSIITWNS 381
                + IHG  ++        V NALI MY+R      +  A   F     K  ++WNS
Sbjct: 313 -----RAIHGLVIKNGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNS 367

Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
           ML+GY+  + + ++   FR M  + +  +    ++ L  C+ +A LQ G++ H  I+   
Sbjct: 368 MLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHSG 427

Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
            F  +  + +SL+ MY++SG + +AK  F+   +   V + S+I GY   G   +   LF
Sbjct: 428 -FASNNFVSSSLIFMYSKSGILDDAKKSFEEADKGSSVPWNSMIFGYAQHGHAHIVHSLF 486

Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
            EM + ++  DHVT V ++++CSH+GLV EG +    M + YGI  ++EH+AC VDLYGR
Sbjct: 487 NEMVELKVPLDHVTFVGLITSCSHAGLVDEGSEILNAMETRYGIPLRMEHYACGVDLYGR 546

Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
           AG L KAKE+I  MP+ P + +W TLLGAC+IH N  +    A  LL + P+    Y+L+
Sbjct: 547 AGQLEKAKELIDSMPFEPDAMVWMTLLGACRIHGNMELASEVASHLLVSEPKQHSTYILL 606

Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           ++MY+  G W   A V+  M++ G+ K+PG +W++  N    F  +D S+ +  EIY +L
Sbjct: 607 SSMYSGLGMWSDRAIVQREMKNRGLSKVPGWSWIEVKNEVHSFNAEDRSHPRMDEIYEML 666

Query: 682 GGLTELMKDAGYVVKEE 698
             L ++ K       EE
Sbjct: 667 SLLLQVAKMCSSCEDEE 683



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 194/435 (44%), Gaps = 47/435 (10%)

Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CI 201
           WN L++ +V  G +  A C+ + M ++ +  + F   S L++         G  + S   
Sbjct: 59  WNSLLTAHVSAGAHPAAWCLLRAMHAQGVAANTFALGSSLRSAAAARCPALGAQLQSLAF 118

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
            +    ++F  +AL+ MY K G+V  ARR+FD M ER+ VSWN +I+ Y   G   +A +
Sbjct: 119 KSGLADNVFAASALLHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGYVESGKVLQALE 178

Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
           LF+ M+ E +  +  T+  +      +  F                              
Sbjct: 179 LFINMETERLVPDEATFAALLTAFDDSNYF------------------------------ 208

Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE-KSIITWN 380
                 L  ++HG  V+        V NA IT YS+C  L  +  +F    + + +I+WN
Sbjct: 209 ------LMHQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWN 262

Query: 381 SMLSGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           +ML  YT+     ++   F  M R SGV+ +  +  SI+  C    + Q G+  H  +++
Sbjct: 263 AMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHDDHQ-GRAIHGLVIK 321

Query: 440 RAMFNEHLLLWNSLVEMYAR-SGK--VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496
             +     +  N+L+ MY R SG   + +A   FD +  +D V++ S++ GY        
Sbjct: 322 NGLEGATPVC-NALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNSMLTGYSQHNLSAD 380

Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-ACM 555
           AL+ F  M    I+ D     A L +CS   ++  G++    +  I+  F       + +
Sbjct: 381 ALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSI--IHSGFASNNFVSSSL 438

Query: 556 VDLYGRAGLLNKAKE 570
           + +Y ++G+L+ AK+
Sbjct: 439 IFMYSKSGILDDAKK 453



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 5/233 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS---LYNNACFLV 132
           SF  II  C +     QG+ +H   I  GLE    +   L+  Y   S   +  +AC   
Sbjct: 296 SFTSIISTCPEHDD-HQGRAIHGLVIKNGLEGATPVCNALIAMYTRISGNCMMEDACKCF 354

Query: 133 ENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
           ++  I+  + WN +++ Y +    A+AL  ++ MQS  IR D + + + L++C E+  + 
Sbjct: 355 DSLLIKDTVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQ 414

Query: 193 FGRVVH-SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            GR +H S I +    + FV ++L+ MY K G +D A++ F++  +  +V WN+MI  YA
Sbjct: 415 LGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEADKGSSVPWNSMIFGYA 474

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
             G       LF EM E  V ++ +T+  +   C   G      E+L+ M T+
Sbjct: 475 QHGHAHIVHSLFNEMVELKVPLDHVTFVGLITSCSHAGLVDEGSEILNAMETR 527



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 140/346 (40%), Gaps = 36/346 (10%)

Query: 349 NALITMYSRCK-DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
           N L+T YS     L  A  +F         +WNS+L+ +        +  L R M   GV
Sbjct: 28  NQLLTAYSLSPLGLAAARRVFDEIPRPDAASWNSLLTAHVSAGAHPAAWCLLRAMHAQGV 87

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
             N   + S L   A       G +      +  +  +++   ++L+ MYA+ G+V +A+
Sbjct: 88  AANTFALGSSLRSAAAARCPALGAQLQSLAFKSGL-ADNVFAASALLHMYAKCGRVRDAR 146

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            VFD M  R+ V++ +LIAGY   G+   AL+LF  M   ++ PD  T  A+L+A   S 
Sbjct: 147 RVFDGMPERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLTAFDDSN 206

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
             +    Q       YG    L      +  Y + G L +++ I  ++  +     W  +
Sbjct: 207 YFL--MHQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAM 264

Query: 588 LGACQIH--------------RNTGI--GEWAAEKLLETRPENSGY-------YVLIANM 624
           LGA   H              R +G+    ++   ++ T PE+  +        V+   +
Sbjct: 265 LGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHDDHQGRAIHGLVIKNGL 324

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPG-CAWVDAGNVFSPFLVDDT 669
             AT   + L  + T        +I G C   DA   F   L+ DT
Sbjct: 325 EGATPVCNALIAMYT--------RISGNCMMEDACKCFDSLLIKDT 362



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 151/344 (43%), Gaps = 49/344 (14%)

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           ++ SCI +   W+  +    +S  G    +  ARR+FD++   DA SWN++++A+ S G 
Sbjct: 16  LLKSCIISPTRWNQLLTAYSLSPLG----LAAARRVFDEIPRPDAASWNSLLTAHVSAGA 71

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIA-GGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              A+ L   M  +GV       NT A G  LR+                     + A  
Sbjct: 72  HPAAWCLLRAMHAQGVAA-----NTFALGSSLRSA--------------------AAARC 106

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             LGA           ++   A +    +     +AL+ MY++C  +R A  +F    E+
Sbjct: 107 PALGA-----------QLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARRVFDGMPER 155

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           + ++WN++++GY       ++  LF  M    + P+  T A++L      +N     + H
Sbjct: 156 NTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLT-AFDDSNYFLMHQLH 214

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQGE 493
             I++       L + N+ +  Y++ G + E++ +FD +   RD +++ +++  Y   G 
Sbjct: 215 GKIVKYGS-ALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLGAYTYHGM 273

Query: 494 GRVALKLFEEM-NKNQIKPDHVTMVAVLSAC----SHSGLVVEG 532
              A+  F  M  ++ ++ D  +  +++S C     H G  + G
Sbjct: 274 DYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHDDHQGRAIHG 317


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 173/615 (28%), Positives = 320/615 (52%), Gaps = 48/615 (7%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
            + + +H   +  G  ++  ++  LV  Y+   +  +A  + +N   R    W  L++ Y
Sbjct: 81  TEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGY 140

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSL 209
           V++     AL ++ +M        N+T   VL AC  +  ++FG+ VH+ +   H ++  
Sbjct: 141 VQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDT 200

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            + N+L S Y KF +++ A + F  + E+D +SW ++IS+    G    +   F++M  +
Sbjct: 201 SIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSD 260

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G++ N  T  ++                                   L AC  +  L LG
Sbjct: 261 GMKPNEYTLTSV-----------------------------------LSACCVMLTLDLG 285

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
            +IH  +++  YG    ++N+++ +Y +C  L  A  LF+     +++TWN+M++G+  +
Sbjct: 286 AQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKM 345

Query: 390 -DCAEESAF----------LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
            D AE+             +F++++RSG++P+  T +S+L +C+ +  L+ G++ H  I+
Sbjct: 346 MDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQII 405

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +  +  + +++  +LV MY + G + +A   F  M  R  +++TS+I G+   G  + AL
Sbjct: 406 KSGVLAD-VVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQAL 464

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LFE+M    IKP+ VT V VLSACSH+GL  E    FE M   Y I P ++HFAC++D+
Sbjct: 465 QLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDM 524

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
           Y R G + +A +++ KM + P   +W+ L+  C+ H  + +G +AAE+LL+ +P++   Y
Sbjct: 525 YLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETY 584

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           V + NM+ + G W  ++KVR  M++  V K+   +W+        F  +D S+ Q+ E+Y
Sbjct: 585 VSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMY 644

Query: 679 PLLGGLTELMKDAGY 693
            LL  +   +K  GY
Sbjct: 645 KLLETVLNEVKALGY 659



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 217/447 (48%), Gaps = 33/447 (7%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C  ++++  GKQ+HA  I   ++ +  +   L +FY+ F     A    +    + 
Sbjct: 171 VLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKD 230

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  +IS    +G  A +L  +  M S  ++ + +T  SVL AC  M+ +D G  +HS
Sbjct: 231 VISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHS 290

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             I   +  S+ + N+++ +Y K G +  A++LF+ M   + V+WN MI+ +A       
Sbjct: 291 LSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAK------ 344

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
                +++ E+ V  +         G      F+ +    S M+       SV +V    
Sbjct: 345 ----MMDLAEDDVAAH-------KSGSTALAMFQKLYR--SGMKPDLFTFSSVLSV---- 387

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
            CS++ AL+ G++IHG  ++        V  AL++MY++C  +  A   F     +++I+
Sbjct: 388 -CSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMIS 446

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W SM++G+     ++++  LF +M   G++PN VT   +L  C+  A L   +  + + L
Sbjct: 447 WTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSH-AGLA-DEALYYFEL 504

Query: 439 RRAMFNEHLLL--WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGR 495
            +  +N   ++  +  L++MY R G+V EA  V   M+   +E  ++ LIAG    G+  
Sbjct: 505 MQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSD 564

Query: 496 VALKLFEEMNKNQIKPDHV-TMVAVLS 521
           +     E++ K  +KP  V T V++L+
Sbjct: 565 LGFYAAEQLLK--LKPKDVETYVSLLN 589



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 115/266 (43%), Gaps = 12/266 (4%)

Query: 46  DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           D A   + S A   F ++  +    D  L +F+ ++  C  + AL QG+Q+H   I  G+
Sbjct: 352 DVAAHKSGSTALAMFQKLYRSGMKPD--LFTFSSVLSVCSNLVALEQGEQIHGQIIKSGV 409

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             + V+   LV+ Y      + A         R  + W  +I+ + R G   +AL +++ 
Sbjct: 410 LADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFED 469

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFG 223
           M+   I+ +  T+  VL AC      D        +   +     + +   L+ MY + G
Sbjct: 470 MRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLG 529

Query: 224 QVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAF---QLFVEMQEEGVEVNVITWN 279
           +V+ A  +  KM  E +   W+ +I+   S G     F   +  ++++ + VE    T+ 
Sbjct: 530 RVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVE----TYV 585

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQE 305
           ++    +  G +K V ++   M+ ++
Sbjct: 586 SLLNMHISAGRWKDVSKVRKLMKEEK 611


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 193/627 (30%), Positives = 317/627 (50%), Gaps = 73/627 (11%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYA-SFSLYNNACFLVENSNIRYP--LPWN 144
           K+ +Q KQ+ A  I  GL  +     +L++F A S S   + C  + N N++ P    WN
Sbjct: 64  KSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILN-NLQNPNVFSWN 122

Query: 145 LLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG-RVVHSCID 202
            +I   V      + L +YK+M +R   R DN+TY  + K C  ++    G  ++   + 
Sbjct: 123 AVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLK 182

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
              +  ++++N ++ M    G+  +A ++FD+   RD VS                    
Sbjct: 183 MGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVS-------------------- 222

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
                          WN++  G +R    +  + +  +M T+    D V  +  + AC+ 
Sbjct: 223 ---------------WNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQ 267

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           + +LKLG+EIH            ++ NAL+ MY +C DL    +LF    +K++++W +M
Sbjct: 268 LESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTM 327

Query: 383 LSGYTH---LDCAE----------------------------ESAFLFREMFRSGVEPNY 411
           + GY     LD A                             E+  LFREM  S ++P+ 
Sbjct: 328 IVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDK 387

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           VT+   L  C+++  L  G   H YI ++   +  + L  +L++MYA+ G + +A  VF+
Sbjct: 388 VTMLHCLSACSQLGALDTGMWTHNYI-KKHNLSLDVALGTALIDMYAKCGNMTKALQVFN 446

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            M RR+ +T+T++I G  + G    A+  F +M  + + PD +T + VL+AC H GLV E
Sbjct: 447 EMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEE 506

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGAC 591
           G+K F++M S + + PQ +H++CMV+L GRAGLL +A+E+I  MP    + +W  L  AC
Sbjct: 507 GRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFAC 566

Query: 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPG 651
            IHRN  IGE AA KLL+  P +SG YVL+ANMY   G W++   +R  M + GV K PG
Sbjct: 567 GIHRNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPG 626

Query: 652 CAWVDAGNVFSPFLVDDTSNVQAQEIY 678
            + ++   + + F+V D S+ Q+++IY
Sbjct: 627 SSSIEVNGIINEFIVRDKSHPQSEQIY 653



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 201/434 (46%), Gaps = 12/434 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +++ +   C  +     G ++    + +G +K+  L   ++    S      A  + +  
Sbjct: 156 TYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEG 215

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
            +R  + WN LI+ YVR     EA+ +Y+QM +  ++ D  T   V+ AC ++  +  GR
Sbjct: 216 CVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGR 275

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H  I+       + + NAL+ MY K G ++  + LFD M ++  VSW TMI  YA  G
Sbjct: 276 EIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNG 335

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L   A +LF +M E+    NV+ WN + G C++       LEL   M+      D V  +
Sbjct: 336 LLDMAGKLFHDMPEK----NVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTML 391

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L ACS +GAL  G   H    +        +  ALI MY++C ++  A  +F     +
Sbjct: 392 HCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRR 451

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
           + +TW +++ G        ++ F F +M  SG+ P+ +T   +L  C     ++ G+++ 
Sbjct: 452 NSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYF 511

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQ-- 491
             +  R   +     ++ +V +  R+G + EA+ +   M    D + + +L    GI   
Sbjct: 512 DQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRN 571

Query: 492 ---GEGRVALKLFE 502
              GE R A KL +
Sbjct: 572 LLIGE-RAASKLLD 584


>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
 gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
 gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 188/647 (29%), Positives = 306/647 (47%), Gaps = 78/647 (12%)

Query: 95  QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
           QLHA  +   ++ +  L  KL++FY     +  A  + +   +R    +N L+  Y    
Sbjct: 43  QLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSRE 102

Query: 155 FYAEALCVYKQ------MQSRRIRGDNFTYPSVLKA---CGEMMDVDFGRVVHS-CIDAC 204
            Y +A  ++          S   R D+ +   VLKA   C +       R VH   I   
Sbjct: 103 MYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGG 162

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            +  +FV N +++ Y K   ++ AR++FD+M ER                          
Sbjct: 163 FDSDVFVGNGMITYYTKCDNIESARKVFDEMSER-------------------------- 196

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL-GACSHV 323
                    +V++WN++  G  ++G+F+   ++   M     +  +  TVI +  AC   
Sbjct: 197 ---------DVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQS 247

Query: 324 GALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT----- 378
             L  G E+H   +        ++ NA+I  Y++C  L +A  LF   +EK  +T     
Sbjct: 248 SDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAII 307

Query: 379 --------------------------WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
                                     WN+M+SG    +  EE    FREM R G  PN V
Sbjct: 308 SGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTV 367

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T++S+LP     +NL+ GKE H + +R    N ++ +  S+++ YA+ G +  A+ VFD 
Sbjct: 368 TLSSLLPSLTYSSNLKGGKEIHAFAIRNGADN-NIYVTTSIIDNYAKLGFLLGAQRVFDN 426

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
              R  + +T++I  Y + G+   A  LF++M     KPD VT+ AVLSA +HSG     
Sbjct: 427 CKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMA 486

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
           Q  F+ M + Y I P +EH+ACMV +  RAG L+ A E I+KMP  P + +W  LL    
Sbjct: 487 QHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGAS 546

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           +  +  I  +A ++L E  PEN+G Y ++AN+Y   G W++   VR  M+ +G++KIPG 
Sbjct: 547 VLGDLEIARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGT 606

Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           +W++       F+  D+S  +++E+Y ++ GL E M D  Y+ K+E 
Sbjct: 607 SWIETEKGLRSFIAKDSSCERSKEMYEIIEGLVESMSDKEYIRKQEL 653



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 185/376 (49%), Gaps = 6/376 (1%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
            +Q+H   I  G + +  +   ++T+Y       +A  + +  + R  + WN +IS Y +
Sbjct: 151 ARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQ 210

Query: 153 DGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLF 210
            G + +   +YK M +    + +  T  SV +ACG+  D+ FG  VH  +   H +  L 
Sbjct: 211 SGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLS 270

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + NA++  Y K G +D AR LFD+M E+D+V++  +IS Y + GL KEA  LF EM+  G
Sbjct: 271 LCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIG 330

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           +     TWN +  G ++  + + V+     M    +  ++V     L + ++   LK GK
Sbjct: 331 LS----TWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGK 386

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
           EIH  A+R        V  ++I  Y++   L  A  +F    ++S+I W ++++ Y    
Sbjct: 387 EIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHG 446

Query: 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450
            ++ +  LF +M   G +P+ VT+ ++L   A   +    +     +L +      +  +
Sbjct: 447 DSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHY 506

Query: 451 NSLVEMYARSGKVPEA 466
             +V + +R+GK+ +A
Sbjct: 507 ACMVSVLSRAGKLSDA 522



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 52/255 (20%)

Query: 70  HDVVLDSFAHIIFCCGKVKA---------------LAQGKQLHACAIALGLEKNPVLVPK 114
           H+ V++SF  +I C  +                  L  GK++HA AI  G + N  +   
Sbjct: 347 HEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTS 406

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           ++  YA       A  + +N   R  + W  +I+ Y   G    A  ++ QMQ    + D
Sbjct: 407 IIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPD 466

Query: 175 NFTYPSVLKACGEMMDVDFGRVV----------------HSCI-----------DACHEW 207
           + T  +VL A     D D  + +                ++C+           DA    
Sbjct: 467 DVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFI 526

Query: 208 SLFVHNALVSMYGK-------FGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWK 257
           S    + +  ++G         G +++AR   D++ E    +  ++  M + Y   G W+
Sbjct: 527 SKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTIMANLYTQAGRWE 586

Query: 258 EAFQLFVEMQEEGVE 272
           EA  +  +M+  G++
Sbjct: 587 EAEMVRNKMKRIGLK 601


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 283/530 (53%), Gaps = 40/530 (7%)

Query: 171 IRGDNFTYPSVLKACGEMMDVDFG-RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
           I+ DNFT+P ++KAC  +   +FG R+    +   ++  +F+ N+L++MYGK  + +++R
Sbjct: 6   IQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSR 65

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
                                          Q+F EM ++    N ++W+ I G CL+  
Sbjct: 66  -------------------------------QVFDEMPDK----NAVSWSAIIGACLQDD 90

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
             K    L  +M + E    S   ++   AC  V + +   +++   V       ++V++
Sbjct: 91  RCKEGFSLFRQMLS-EGSRPSRGAILNAMAC--VRSHEEADDVYRVVVENGLDFDQSVQS 147

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
           A   M++RC  +  A  LF     K ++TW + +  Y   D   E+  L ++M   G+ P
Sbjct: 148 AAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFP 207

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           + +T+  ++  C+ +A+ Q     H  I     +N+ L +  +L+++Y + G +  A+ V
Sbjct: 208 DAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKV 267

Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
           FD M  R+ +T++++I+GYG+ G GR AL LF++M K  +KPDH+T V++LSACSHSGLV
Sbjct: 268 FDGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLV 326

Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
            EG + F  M   +G+ P+ EH+ACMVD+ GRAG L++A + I +MP  P +A+W  LLG
Sbjct: 327 AEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLG 386

Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
           AC+IH N  + E  A  L +  P N+G YV++ N+Y  TG   +   +RT M++ GV+KI
Sbjct: 387 ACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKI 446

Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
            G + ++  N    F+  D S+ Q   IY  L  L + ++  GY     F
Sbjct: 447 AGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINF 496



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 180/405 (44%), Gaps = 45/405 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F  II  C  ++    G ++H   +  G +    +   L+T Y     Y  +  + +  
Sbjct: 12  TFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEM 71

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQM---QSRRIRGDNFTYPSVLKACGEMMDVD 192
             +  + W+ +I   ++D    E   +++QM    SR  RG      + +++  E  DV 
Sbjct: 72  PDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSHEEADDV- 130

Query: 193 FGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           +  VV + +D    +   V +A   M+ + G+V+VAR+LFD ++ +D V+W T I AY  
Sbjct: 131 YRVVVENGLD----FDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVK 186

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
             +  EA  L  +M  +G+  + IT                   LL  +R          
Sbjct: 187 ADMPLEALGLLKQMMLQGIFPDAIT-------------------LLGVIR---------- 217

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRG-CYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                 ACS + + +L   +HG    G  Y +   V  ALI +Y +C  L +A  +F   
Sbjct: 218 ------ACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGM 271

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            E++IITW++M+SGY       E+  LF +M ++ V+P+++T  SIL  C+    +  G 
Sbjct: 272 QERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGW 330

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           E    + R          +  +V++  R+GK+ EA    + M  R
Sbjct: 331 ECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVR 375


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 176/615 (28%), Positives = 320/615 (52%), Gaps = 48/615 (7%)

Query: 91  AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
            + + +H   +  G  ++  ++  LV  Y+   +  +A  + +N   R    W  L++ Y
Sbjct: 75  TEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGY 134

Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSL 209
           V++     AL ++ +M        N+T   VL AC  +  ++FG+ VH+ +   H ++  
Sbjct: 135 VQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDT 194

Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
            + N+L S Y KF +++ A + F  + E+D +SW ++IS+    G    +   F++M  +
Sbjct: 195 SIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSD 254

Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
           G                              M+  E  L SV     L AC  +  L LG
Sbjct: 255 G------------------------------MKPNEYTLTSV-----LSACCVMLTLDLG 279

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
            +IH  +++  YG    ++N+++ +Y +C  L  A  LF+     +++TWN+M++G+  +
Sbjct: 280 AQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKM 339

Query: 390 -DCAEESAF----------LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
            D AE+             +F++++RSG++P+  T +S+L +C+ +  L+ G++ H  I+
Sbjct: 340 MDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQII 399

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +  +  + +++  +LV MY + G + +A   F  M  R  +++TS+I G+   G  + AL
Sbjct: 400 KSGVLAD-VVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQAL 458

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           +LFE+M    IKP+ VT V VLSACSH+GL  E    FE M   Y I P ++HFAC++D+
Sbjct: 459 QLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDM 518

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
           Y R G + +A +++ KM + P   +W+ L+  C+ H  + +G +AAE+LL+ +P++   Y
Sbjct: 519 YLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETY 578

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           V + NM+ + G W  ++KVR  M++  V K+   +W+        F  +D S+ Q+ E+Y
Sbjct: 579 VSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMY 638

Query: 679 PLLGGLTELMKDAGY 693
            LL  +   +K  GY
Sbjct: 639 KLLETVLNEVKALGY 653



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 217/447 (48%), Gaps = 33/447 (7%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C  ++++  GKQ+HA  I   ++ +  +   L +FY+ F     A    +    + 
Sbjct: 165 VLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKD 224

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  +IS    +G  A +L  +  M S  ++ + +T  SVL AC  M+ +D G  +HS
Sbjct: 225 VISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHS 284

Query: 200 -CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
             I   +  S+ + N+++ +Y K G +  A++LF+ M   + V+WN MI+ +A       
Sbjct: 285 LSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAK------ 338

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
                +++ E+ V  +         G      F+ +    S M+       SV +V    
Sbjct: 339 ----MMDLAEDDVAAH-------KSGSTALAMFQKLYR--SGMKPDLFTFSSVLSV---- 381

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
            CS++ AL+ G++IHG  ++        V  AL++MY++C  +  A   F     +++I+
Sbjct: 382 -CSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMIS 440

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W SM++G+     ++++  LF +M   G++PN VT   +L  C+  A L   +  + + L
Sbjct: 441 WTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSH-AGLA-DEALYYFEL 498

Query: 439 RRAMFNEHLLL--WNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGR 495
            +  +N   ++  +  L++MY R G+V EA  V   M+   +E  ++ LIAG    G+  
Sbjct: 499 MQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSD 558

Query: 496 VALKLFEEMNKNQIKPDHV-TMVAVLS 521
           +     E++ K  +KP  V T V++L+
Sbjct: 559 LGFYAAEQLLK--LKPKDVETYVSLLN 583



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 12/267 (4%)

Query: 46  DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL 105
           D A   + S A   F ++  +    D  L +F+ ++  C  + AL QG+Q+H   I  G+
Sbjct: 346 DVAAHKSGSTALAMFQKLYRSGMKPD--LFTFSSVLSVCSNLVALEQGEQIHGQIIKSGV 403

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             + V+   LV+ Y      + A         R  + W  +I+ + R G   +AL +++ 
Sbjct: 404 LADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFED 463

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFG 223
           M+   I+ +  T+  VL AC      D        +   +     + +   L+ MY + G
Sbjct: 464 MRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLG 523

Query: 224 QVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAF---QLFVEMQEEGVEVNVITWN 279
           +V+ A  +  KM  E +   W+ +I+   S G     F   +  ++++ + VE    T+ 
Sbjct: 524 RVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVE----TYV 579

Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQET 306
           ++    +  G +K V ++   M+ ++ 
Sbjct: 580 SLLNMHISAGRWKDVSKVRKLMKEEKV 606


>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
 gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
          Length = 906

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 189/596 (31%), Positives = 298/596 (50%), Gaps = 51/596 (8%)

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACG--EMMDVDFGRVV 197
           +PWN L+  ++       AL +Y++M++      N +T P  L+A     +        +
Sbjct: 313 VPWNRLLRAHLGRSRGDLALALYRRMRALSPALPNSYTLPLALRAAASPRVASAVHAHAL 372

Query: 198 HSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLW 256
           H  + A H+    V   +++ Y + G+   ARR+FD M   R    WN +ISAY+S    
Sbjct: 373 HLGLHAQHD----VAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDP 428

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
             A   F  M   G   + +TW  +     R+G    VL+L   M+      ++ +  + 
Sbjct: 429 DAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVA 488

Query: 317 LGACSHVGALKL--GKEIHG-SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
           L AC + G L L  GK IHG   V+G    Y  V N+LI MY +  ++  A   F+    
Sbjct: 489 LSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATA 548

Query: 374 KSIITWNSMLSGYTH-------LDC------------------------------AEESA 396
           K+ +TWN++++ Y         LD                                + + 
Sbjct: 549 KNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRAL 608

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
            LFR M +  + PN VT+A++L  C  +  L+ G+E H + ++ A  + H L+ N L+ M
Sbjct: 609 ELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMK-AELDRHSLVENGLINM 667

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           YA+ GKV  A+ VFD M  RD +++ S++AGYG+ G    AL LF +M    ++PD VT 
Sbjct: 668 YAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTF 727

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
           VAVLSAC H+G V EG++ F+RM   + I P +EH+ CMV L GRAGLL  A E++  MP
Sbjct: 728 VAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMP 787

Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
             P   +W  LL +C+IH +  + E     +L++  +++G ++LI N+YA  G WD+  K
Sbjct: 788 VRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKK 847

Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN--VQAQEIYPLLGGLTELMKD 690
           VR   ++ G+RK PG +W++  N    F           A++++ +L  L   M+D
Sbjct: 848 VRVMTKEAGLRKNPGQSWIEVDNKVVAFAAGSAPPNLTGAEDVFGMLDDLYAEMED 903



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 44/249 (17%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           FA  G+  +A E F R++    S +VV  + A ++  C  + AL  G++LH  A+   L+
Sbjct: 598 FASSGDTDRALELFRRMQQQWLSPNVV--TMATVLSACVDLLALRLGRELHGHAMKAELD 655

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           ++ ++   L+  YA     + A  + +    R  + WN +++ Y   G   EAL ++  M
Sbjct: 656 RHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDM 715

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVD 226
               +  D  T+ +VL ACG                                    G+V 
Sbjct: 716 AGATVEPDGVTFVAVLSACGHA----------------------------------GRVT 741

Query: 227 VARRLFDKMLERDAVS-----WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
             RRLFD+M+    +S     +  M+      GL ++A +L   M    V  ++  W  +
Sbjct: 742 EGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMP---VRPDLCVWGAL 798

Query: 282 AGGCLRTGN 290
              C   G+
Sbjct: 799 LNSCRIHGD 807


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 188/596 (31%), Positives = 302/596 (50%), Gaps = 57/596 (9%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
           LV+ YA   +  +A  L +  + R  +  W  L+S Y R     EA  ++++M  R +  
Sbjct: 79  LVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNV-- 136

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSC--IDACHEWSLFVHNALVSMYGKFGQVDVARRL 231
              ++ ++L+A         GRV  +C   D          N L++   + G VD AR L
Sbjct: 137 --VSWNTMLEAYAAA-----GRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKAREL 189

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
           F +M ERD ++W TM+   A  G   EA  LF  M E     NV++WN +  G  R    
Sbjct: 190 FGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPER----NVVSWNAMISGYTRNHRI 245

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
              L+L  +M  ++           + +C                            N +
Sbjct: 246 DEALDLFMKMPERD-----------IASC----------------------------NIM 266

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
           +T + + KDL+ A  LF    E++++TW +M++GY     +E +  LF  M  +G  PN 
Sbjct: 267 VTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQ 326

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           VT    L  C+ +A L  GK+ H  I +   F     + ++L+ +YA+ G++  A+ +FD
Sbjct: 327 VTFLGALDACSDLAALCEGKQVHQMICK-TTFQFDAFVESALMNVYAKCGEIGLARKLFD 385

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
           L   +D +++  +IA Y   G G  A+ L+E+M +N  +P+ VT V +LSACSHSGLV E
Sbjct: 386 LSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDE 445

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS-AMWATLLGA 590
           G K FE M +   I  + EH+ C++DL  RAG L+ AK +I  +   P S ++W+ LLG 
Sbjct: 446 GLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGG 505

Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
           C  H N  IG  AA  LL+  P+N+G Y L++N+YA+ G W + A++R+ M + G++K P
Sbjct: 506 CNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQP 565

Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIV 706
           GC+W++  N    F+  D S+ ++  IY LL  +  +M+  G V  +    +E++V
Sbjct: 566 GCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHHMMRIVGTVPSDLVHVDEDVV 621



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 207/424 (48%), Gaps = 27/424 (6%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           ++N V    ++  YA+     +AC L +   +R    WN+L++  VR G   +A  ++ +
Sbjct: 133 QRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGR 192

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           M  R    D   + +++        VD  RV+    D+  E ++   NA++S Y +  ++
Sbjct: 193 MPER----DVMAWTTMVDGVARSGKVDEARVL---FDSMPERNVVSWNAMISGYTRNHRI 245

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D A  LF KM ERD  S N M++ +      K A +LF EM E     NV+TW T+  G 
Sbjct: 246 DEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPER----NVVTWTTMMNGY 301

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
           L+    +  L L S M    T  + V  +  L ACS + AL  GK++H    +  +    
Sbjct: 302 LKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDA 361

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            V +AL+ +Y++C ++  A  LF ++ EK +I+WN +++ Y H     E+  L+ +M  +
Sbjct: 362 FVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQEN 421

Query: 406 GVEPNYVTIASILPLCARVANLQHG-KEFHCYILRR--AMFNEHLLLWNSLVEMYARSGK 462
           G  PN VT   +L  C+    +  G K F   +  R  A+ +EH   +  L+++ +R+G+
Sbjct: 422 GYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEH---YTCLIDLCSRAGR 478

Query: 463 VPEAKSVFDLMSRRDE--VTYTSLIAG---YGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           + +AK +   +  +      +++L+ G   +G +  G +A +     N  Q +PD+    
Sbjct: 479 LDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAAR-----NLLQAEPDNAGTY 533

Query: 518 AVLS 521
            +LS
Sbjct: 534 TLLS 537



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 44/238 (18%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C  + AL +GKQ+H        + +  +   L+  YA       A  L + S
Sbjct: 328 TFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLS 387

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG- 194
             +  + WN +I+ Y   G   EA+ +Y++MQ    R ++ TY  +L AC     VD G 
Sbjct: 388 REKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGL 447

Query: 195 RVVHSCIDACHEWSLFVHNA----LVSMYGKFGQVDVARRL--FDKMLERDAVSWNTMIS 248
           ++  S ++   + S+ V +     L+ +  + G++D A+RL  + K+       W+ ++ 
Sbjct: 448 KIFESMVN---DRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLG 504

Query: 249 A----------------------------------YASKGLWKEAFQLFVEMQEEGVE 272
                                              YAS G WKEA ++  EM   G++
Sbjct: 505 GCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLK 562


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 198/661 (29%), Positives = 332/661 (50%), Gaps = 46/661 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           L  ++  G   +  E F  + +T  + +    +    +  C        GK++HA  +  
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSY--TIVSALTACDGFSYAKLGKEIHASVLKS 313

Query: 104 GLEKNPVLV-PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV 162
               + + V   L+  Y        A  ++   N    + WN LI  YV++  Y EAL  
Sbjct: 314 STHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEF 373

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYG 220
           +  M +   + D  +  S++ A G + ++  G  +H+ +   H W  +L V N L+ MY 
Sbjct: 374 FSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIK-HGWDSNLQVGNTLIDMYS 432

Query: 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280
           K        R F +M ++D +SW T+I+ YA      EA +LF ++ ++           
Sbjct: 433 KCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKK----------- 481

Query: 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340
                              RM   E  L S+     L A S + ++ + KEIH   +R  
Sbjct: 482 -------------------RMEIDEMILGSI-----LRASSVLKSMLIVKEIHCHILRK- 516

Query: 341 YGEYENV-RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            G  + V +N L+ +Y +C+++ +A  +F+    K +++W SM+S         E+  LF
Sbjct: 517 -GLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELF 575

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           R M  +G+  + V +  IL   A ++ L  G+E HCY+LR+    E  +   ++V+MYA 
Sbjct: 576 RRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAV-AVVDMYAC 634

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G +  AK+VFD + R+  + YTS+I  YG+ G G+ A++LF++M    + PDH++ +A+
Sbjct: 635 CGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLAL 694

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           L ACSH+GL+ EG+   + M   Y + P  EH+ C+VD+ GRA  + +A E +  M   P
Sbjct: 695 LYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEP 754

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
           T+ +W  LL AC+ H    IGE AA++LLE  P+N G  VL++N++A  G W+ + KVR 
Sbjct: 755 TAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRA 814

Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT-ELMKDAGYVVKEE 698
            M+  G+ K PGC+W++       F   D S+ +++EIY  L  +T +L ++ GYV   +
Sbjct: 815 KMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTK 874

Query: 699 F 699
           F
Sbjct: 875 F 875



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 155/560 (27%), Positives = 268/560 (47%), Gaps = 51/560 (9%)

Query: 58  EAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL--GLEKNPVLVPKL 115
           EAF R+ ++  +  V  ++FA+++  CGK +A++QG+QLH+         E +  L  KL
Sbjct: 66  EAFQRLDVSENNSPV--EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKL 122

Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
           V  Y      ++A  + +    R    WN +I  YV +G  A AL +Y  M+   +    
Sbjct: 123 VFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGL 182

Query: 176 FTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
            ++P++LKAC ++ D+  G  +HS  +   +  + F+ NALVSMY K   +  ARRLFD 
Sbjct: 183 SSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDG 242

Query: 235 MLER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
             E+ DAV WN+++S+Y++ G   E  +LF EM   G   N                   
Sbjct: 243 FQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN------------------- 283

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE-NVRNALI 352
                           S   V  L AC      KLGKEIH S ++      E  V NALI
Sbjct: 284 ----------------SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALI 327

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            MY+RC  +  A  + +      ++TWNS++ GY      +E+   F +M  +G + + V
Sbjct: 328 AMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEV 387

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           ++ SI+    R++NL  G E H Y+++   ++ +L + N+L++MY++          F  
Sbjct: 388 SMTSIIAASGRLSNLLAGMELHAYVIKHG-WDSNLQVGNTLIDMYSKCNLTCYMGRAFLR 446

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS--HSGLVV 530
           M  +D +++T++IAGY        AL+LF ++ K +++ D + + ++L A S   S L+V
Sbjct: 447 MHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIV 506

Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +          +     Q E    +VD+YG+   +  A  +   +      + W +++ +
Sbjct: 507 KEIHCHILRKGLLDTVIQNE----LVDVYGKCRNMGYATRVFESIKGKDVVS-WTSMISS 561

Query: 591 CQIHRNTGIGEWAAEKLLET 610
             ++ N         +++ET
Sbjct: 562 SALNGNESEAVELFRRMVET 581



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 203/438 (46%), Gaps = 47/438 (10%)

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
           F   N  ++ P P      L   DG   EA   ++++           +  VL+ CG+  
Sbjct: 43  FRQSNQPVQVPSP-----KLACFDGVLTEA---FQRLDVSENNSPVEAFAYVLELCGKRR 94

Query: 190 DVDFGRVVHSCI-DACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMI 247
            V  GR +HS I      + L F+   LV MYGK G +D A ++FD+M +R A +WNTMI
Sbjct: 95  AVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMI 154

Query: 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307
            AY S G    A  L+  M+ EGV + + ++  +                          
Sbjct: 155 GAYVSNGEPASALALYWNMRVEGVPLGLSSFPAL-------------------------- 188

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
                    L AC+ +  ++ G E+H   V+  Y     + NAL++MY++  DL  A  L
Sbjct: 189 ---------LKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRL 239

Query: 368 FKMTAEK-SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           F    EK   + WNS+LS Y+    + E+  LFREM  +G  PN  TI S L  C   + 
Sbjct: 240 FDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSY 299

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
            + GKE H  +L+ +  +  L + N+L+ MY R GK+P+A+ +   M+  D VT+ SLI 
Sbjct: 300 AKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIK 359

Query: 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
           GY      + AL+ F +M     K D V+M ++++A      ++ G  +       +G  
Sbjct: 360 GYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGM-ELHAYVIKHGWD 418

Query: 547 PQLEHFACMVDLYGRAGL 564
             L+    ++D+Y +  L
Sbjct: 419 SNLQVGNTLIDMYSKCNL 436


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 193/628 (30%), Positives = 313/628 (49%), Gaps = 48/628 (7%)

Query: 91  AQGK----QLHACAIALGLEKNPVLVP-KLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           AQG     QLHACA+ LGL +        LV  Y  F    +A    +    R    WN 
Sbjct: 81  AQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNA 140

Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDAC 204
           ++S   R+   AEA+ ++ +M    + GD  T  SVL  C  + D      +H   +   
Sbjct: 141 MLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHG 200

Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
            +  LFV NA++ +YGK                                G+ +E  ++F 
Sbjct: 201 LDDELFVCNAMIDVYGKL-------------------------------GMLEEVRKVFD 229

Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
            M       +++TWN+I  G  + G     +E+   MR      D +  +    A +  G
Sbjct: 230 GMSSR----DLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCG 285

Query: 325 ALKLGKEIHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYILFKMTAEKSIITWNSML 383
            +  G+ +H   VR  +   + +  NA++ MY++   +  A  +F     +  ++WN+++
Sbjct: 286 DICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLI 345

Query: 384 SGYTHLDCAEESAFLFREMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +GY     A E+  ++  M +  G++P   T  S+LP  + +  LQ G   H   ++  +
Sbjct: 346 TGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGL 405

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
            N  + +   ++++YA+ GK+ EA  +F+   RR    + ++I+G G+ G G  AL LF 
Sbjct: 406 -NLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFS 464

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           +M +  I PDHVT V++L+ACSH+GLV +G+  F  M + YGI P  +H+ACMVD++GRA
Sbjct: 465 QMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRA 524

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G L+ A + I  MP  P SA+W  LLGAC+IH N  +G+ A++ L E  P+N GYYVL++
Sbjct: 525 GQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMS 584

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNV--QAQEIYPL 680
           NMYA  G WD + +VR+ +R   ++K PG + ++     + F   +  N+  Q +EI   
Sbjct: 585 NMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRE 644

Query: 681 LGGLTELMKDAGYVVKEEFCSEEEIVEE 708
           L  L   ++  GYV    F  ++  VEE
Sbjct: 645 LLDLLAKIRSLGYVPDYSFVLQD--VEE 670



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 207/466 (44%), Gaps = 53/466 (11%)

Query: 54  SKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113
           ++A   F R+ +   + D V  + + ++  C  +   A    +H  A+  GL+    +  
Sbjct: 152 AEAVGLFGRMVMEGVAGDAV--TVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCN 209

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
            ++  Y    +      + +  + R  + WN +IS + + G  A A+ ++  M+   +  
Sbjct: 210 AMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSP 269

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS---LFVHNALVSMYGKFGQVDVARR 230
           D  T  S+  A  +  D+  GR VH C      W    +   NA+V MY K  +++ A+R
Sbjct: 270 DVLTLLSLASAIAQCGDICGGRSVH-CYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQR 328

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE-EGVEVNVITWNTIAGGCLRTG 289
           +FD M  RDAVSWNT+I+ Y   GL  EA  ++  MQ+ EG++                G
Sbjct: 329 MFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKP-------------IQG 375

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
            F  VL                       A SH+GAL+ G  +H  +++        V  
Sbjct: 376 TFVSVLP----------------------AYSHLGALQQGTRMHALSIKTGLNLDVYVGT 413

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP 409
            +I +Y++C  L  A +LF+ T  +S   WN+++SG        ++  LF +M + G+ P
Sbjct: 414 CVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISP 473

Query: 410 NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469
           ++VT  S+L  C+    +  G+ F   +            +  +V+M+ R+G++ +A   
Sbjct: 474 DHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDA--- 530

Query: 470 FDLMS----RRDEVTYTSLIAGYGIQGE---GRVALK-LFEEMNKN 507
           FD +     + D   + +L+    I G    G+VA + LFE   KN
Sbjct: 531 FDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKN 576


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/524 (32%), Positives = 288/524 (54%), Gaps = 38/524 (7%)

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
            Y + + AC +  ++D  R +H+ + +       F+ N+L+ +Y K G V  A ++FDKM
Sbjct: 53  VYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKM 112

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
             +D VSW ++I+ YA   +  EA  L   M +   + N  T+ ++              
Sbjct: 113 RNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASL-------------- 158

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                ++    Y DS                 +G +IH  AV+  + E   V +AL+ MY
Sbjct: 159 -----LKAVGAYADS----------------GIGGQIHALAVKCDWHEDVYVGSALLDMY 197

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           +RC  +  A  +F     K+ ++WN+++SG+      E +  +F EM R+G E  + T +
Sbjct: 198 ARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYS 257

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           SI    A +  L+ GK  H ++++         + N++++MYA+SG + +A+ VF+ +  
Sbjct: 258 SIFSALAGIGALEQGKWVHAHMIKSRQ-KLTAFVGNTMLDMYAKSGSMIDARKVFERVLN 316

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           +D VT+ S++  +   G G+ A+  FEEM K+ I  + ++ + +L+ACSH GLV EG+  
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHY 376

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F+ M   Y + P++EH+  +VDL GRAGLLN A   I KMP  PT+A+W  LL AC++H+
Sbjct: 377 FD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHK 435

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  +G++AA+ + +  P++SG  VL+ N+YA+TG WD  A+VR  M+  GV+K P C+WV
Sbjct: 436 NAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWV 495

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           +  N    F+ +D ++ +A+EIY +   ++  ++  GYV   ++
Sbjct: 496 EIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDY 539



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 173/384 (45%), Gaps = 39/384 (10%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
            I  C + K L   +++HA   +     +  L   L+  Y        A  + +    + 
Sbjct: 57  FITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKD 116

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + W  LI+ Y ++   AEA+ +   M   R + + FT+ S+LKA G   D   G  +H+
Sbjct: 117 MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHA 176

Query: 200 CIDAC--HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWK 257
               C  HE  ++V +AL+ MY + G++D+A  +FDK+  ++ VSWN +IS +A KG  +
Sbjct: 177 LAVKCDWHE-DVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGE 235

Query: 258 EAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317
            A  +F EMQ  G E    T+++I                                    
Sbjct: 236 TALMVFAEMQRNGFEATHFTYSSI-----------------------------------F 260

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            A + +GAL+ GK +H   ++        V N ++ MY++   +  A  +F+    K ++
Sbjct: 261 SALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLV 320

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           TWNSML+ +      +E+   F EM +SG+  N ++   IL  C+    ++ GK +   I
Sbjct: 321 TWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMI 380

Query: 438 LRRAMFNEHLLLWNSLVEMYARSG 461
            +       +  + ++V++  R+G
Sbjct: 381 -KEYNLEPEIEHYVTVVDLLGRAG 403



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++   G       G Q+HA A+     ++  +   L+  YA     + A  + +  
Sbjct: 154 TFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + WN LIS + R G    AL V+ +MQ       +FTY S+  A   +  ++ G+
Sbjct: 214 DSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGK 273

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH+  I +  + + FV N ++ MY K G +  AR++F+++L +D V+WN+M++A+A  G
Sbjct: 274 WVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYG 333

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           L KEA   F EM++ G+ +N I++  I   C   G  K
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVK 371


>gi|356509887|ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Glycine max]
          Length = 750

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/566 (30%), Positives = 301/566 (53%), Gaps = 51/566 (9%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL----YNNACFLVENSNIRY 139
           CG + A+++G  LH   +  G+     +   ++  Y+   +    Y + C ++     + 
Sbjct: 217 CGNLGAVSEGSCLHGVVVKNGVAS--FIQSSVLDMYSKCGVPREAYRSFCEVIH----KD 270

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            L W  +I +Y R G   E L ++++MQ   IR D      VL   G  MDV  G+  H 
Sbjct: 271 LLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGFGNSMDVFQGKAFHG 330

Query: 200 CI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
            I    +     V+++L+ MY KFG + +A R+F  + +     WN M+  Y   G    
Sbjct: 331 VIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIF-PLCQGSGDGWNFMVFGYGKVG---- 385

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
                     E V+                      +EL   M+    + +++     + 
Sbjct: 386 ----------ENVKC---------------------VELFREMQWLGIHSETIGIASAIA 414

Query: 319 ACSHVGALKLGKEIHGSAVRGCY-GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
           +C+ +GA+ LG+ IH + ++G   G+  +V N+L+ MY +C  +  A+ +F  T+E  ++
Sbjct: 415 SCAQLGAVNLGRSIHCNVIKGFLDGKNISVTNSLVEMYGKCGKMTFAWRIFN-TSETDVV 473

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
           +WN+++S + H+   EE+  LF +M R   +PN  T+  +L  C+ +A+L+ G+  HCYI
Sbjct: 474 SWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNTATLVVVLSACSHLASLEKGERVHCYI 533

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
              + F  +L L  +L++MYA+ G++ +++ VFD M  +D + + ++I+GYG+ G    A
Sbjct: 534 -NESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDSMMEKDVICWNAMISGYGMNGYAESA 592

Query: 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557
           L++F+ M ++ + P+ +T +++LSAC+H+GLV EG+  F RM S Y + P L+H+ CMVD
Sbjct: 593 LEIFQHMEESNVMPNGITFLSLLSACAHAGLVEEGKYMFARMKS-YSVNPNLKHYTCMVD 651

Query: 558 LYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617
           L GR G + +A+ ++  MP +P   +W  LLG C+ H    +G   A+  ++  PEN GY
Sbjct: 652 LLGRYGNVQEAEAMVLSMPISPDGGVWGALLGHCKTHNQIEMGIRIAKYAIDLEPENDGY 711

Query: 618 YVLIANMYAATGCWDKLAKVRTCMRD 643
           Y+++ANMY+  G W++   VR  M++
Sbjct: 712 YIIMANMYSFIGRWEEAENVRRTMKE 737



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/522 (22%), Positives = 229/522 (43%), Gaps = 61/522 (11%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           +I     ++ L    + HA  +  G   N  +  KL++ Y S +   ++C     S + +
Sbjct: 10  LILVSKHIRTLDSLLRFHALTVTSGHSTNLFMASKLISLYDSLNNDPSSC-----STLFH 64

Query: 140 PLPW-------NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192
            LP        + L SL+ R   +   L ++  M++  +  ++FT P V+ A   +  + 
Sbjct: 65  SLPSKDTFLYNSFLKSLFSRS-LFPRVLSLFSHMRASNLSPNHFTLPIVVSAAAHLTLLP 123

Query: 193 FGRVVHSCIDACHEWSLFVHNA-LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            G  +H+      +  LF  +A  VS+Y + G++++AR++FD++ +RD V+W  +I  + 
Sbjct: 124 HGASLHALAS---KTGLFHSSASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHV 180

Query: 252 SKGLWKEAFQLFVEMQ---EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYL 308
             G  ++  +    +    E+  + N  TW    GG L                      
Sbjct: 181 HNGEPEKGLRCLRHVHGVVEDDEKPNAKTWE---GGFL---------------------- 215

Query: 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368
                     AC ++GA+  G  +HG  V+     +  ++++++ MYS+C   R AY  F
Sbjct: 216 ----------ACGNLGAVSEGSCLHGVVVKNGVASF--IQSSVLDMYSKCGVPREAYRSF 263

Query: 369 KMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
                K ++ W S++  Y  +    E   LFREM  + + P+ V +  +L       ++ 
Sbjct: 264 CEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGFGNSMDVF 323

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            GK FH  I+RR   ++  +  +SL+ MY + G +  A+ +F L     +  +  ++ GY
Sbjct: 324 QGKAFHGVIIRRYYVDDEKVN-DSLLFMYCKFGMLSLAERIFPLCQGSGD-GWNFMVFGY 381

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
           G  GE    ++LF EM    I  + + + + +++C+  G V  G+     +   +     
Sbjct: 382 GKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVIKGFLDGKN 441

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
           +     +V++YG+ G +  A  I         S  W TL+ +
Sbjct: 442 ISVTNSLVEMYGKCGKMTFAWRIFNTSETDVVS--WNTLISS 481



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 77/170 (45%), Gaps = 2/170 (1%)

Query: 80  IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY 139
           ++  C  + +L +G+++H      G   N  L   L+  YA       +  + ++   + 
Sbjct: 513 VLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDSMMEKD 572

Query: 140 PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199
            + WN +IS Y  +G+   AL +++ M+   +  +  T+ S+L AC     V+ G+ + +
Sbjct: 573 VICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSACAHAGLVEEGKYMFA 632

Query: 200 CIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMI 247
            + +     +L  +  +V + G++G V  A  +   M +  D   W  ++
Sbjct: 633 RMKSYSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMPISPDGGVWGALL 682


>gi|147797310|emb|CAN76007.1| hypothetical protein VITISV_013341 [Vitis vinifera]
          Length = 666

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 185/620 (29%), Positives = 316/620 (50%), Gaps = 88/620 (14%)

Query: 90  LAQGKQLHACAIALG-LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLIS 148
           L   + LHA A   G +  +P +   L+T Y+      +A  + +   +  P  WN +IS
Sbjct: 53  LLHAQPLHADAAKRGFVSSDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMIS 112

Query: 149 LYVRDGFYAEALCVYKQMQS-----------------------------RRIRGD----- 174
            Y R+     A  ++ +M+                              + +RG+     
Sbjct: 113 CYFRESHCGAARELFDRMREAHLANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMG 172

Query: 175 ------NFTYPSVLKACGEMMDVDFGRVVHSC---IDACHEWSLFVHNALVSMYGKFGQV 225
                 + T  SV  ACG++ DV  G  +H     I +  E   FV + +V MYGK G  
Sbjct: 173 SPLSPMSHTITSVFSACGQLRDVILGEQIHGYVMKISSYVENDAFVGSVVVDMYGKCGFE 232

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           ++AR +F  ++++  V W  +I++Y        A ++F EM  EG+E N +T +++    
Sbjct: 233 ELARFVFYSIVDKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSL---- 288

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
                                          + ACS +  L LGKEIHG   R       
Sbjct: 289 -------------------------------ISACSQIPDLMLGKEIHGFITRRRAATTP 317

Query: 346 NV--RNALITMYSRCKDLRHAYILFKMTAE----KSIITWNSMLSGYTHLDCAEESAFLF 399
           +V    +LI MY +C  + + + +F+         +   WN+ ++GY   +   ++  +F
Sbjct: 318 DVFISTSLIDMYGKCNYMVYGHRIFEKDKTYPRCNTTALWNATIAGYMENNFVSDAWDVF 377

Query: 400 REMFR-SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           R +    G+ PN VT++ +LPLCAR + L  GKE HCY LR  + ++ + + N L++MY+
Sbjct: 378 RSITHGEGINPNTVTMSIVLPLCARSSQLLSGKEIHCYALRNGL-DQEIFVSNGLIDMYS 436

Query: 459 RSGKVPEAKSVFD-LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
           + GK+  A++ F+ +M+ ++ +++TS+I G+GI G+G  A+++FE M + ++KPDH+T V
Sbjct: 437 KCGKLKLAENQFNRMMNEKNRISWTSMIDGHGIHGDGEGAIRVFESMVREEVKPDHITFV 496

Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY 577
           A++SACSH+GL+ +G + FE M+  YGI P  E++  +VDL  RAG   +A+++I +MP 
Sbjct: 497 ALISACSHAGLLEQGLRYFEEMSREYGIVPVEENYGTVVDLLARAGRFKEARDLIERMPI 556

Query: 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637
            P + +W  LLGAC+IH N    E AA  L +  P++SG+  L+A++Y   G  +    +
Sbjct: 557 KPGANVWGALLGACRIHGNVKEAELAAHCLQKLEPKDSGFQKLLASIYLEAGRRENAEDL 616

Query: 638 RTCMRDLGVRKIPGCAWVDA 657
           R+ MR++G+ K  G +W++ 
Sbjct: 617 RSQMREMGMEKRQGFSWLET 636



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 127/503 (25%), Positives = 230/503 (45%), Gaps = 31/503 (6%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY-PSVLKACGEMMDVDFGRVVHSCID 202
           N L+ LY   G + E    Y Q++ +    ++FT+   +         +   + +H+  D
Sbjct: 5   NALLILYSEQGKWRELTAFYHQIRKQGFEPNSFTFSSLLKCLSSSQSPLLHAQPLHA--D 62

Query: 203 ACHEWSL----FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKE 258
           A     +    FV N L+++Y + G    AR++FD++       WNTMIS Y  +     
Sbjct: 63  AAKRGFVSSDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYFRESHCGA 122

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG-- 316
           A +LF  M+E  +  N +TW+ +  G  +    K  L +   MR +   + S  + +   
Sbjct: 123 ARELFDRMREAHL-ANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPLSPMSHT 181

Query: 317 ----LGACSHVGALKLGKEIHGSAVR-GCYGEYEN-VRNALITMYSRCKDLRHAYILFKM 370
                 AC  +  + LG++IHG  ++   Y E +  V + ++ MY +C     A  +F  
Sbjct: 182 ITSVFSACGQLRDVILGEQIHGYVMKISSYVENDAFVGSVVVDMYGKCGFEELARFVFYS 241

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             +K ++ W ++++ Y   +C   +  +FREM   G+EPN VT++S++  C+++ +L  G
Sbjct: 242 IVDKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSLISACSQIPDLMLG 301

Query: 431 KEFHCYIL-RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL----I 485
           KE H +I  RRA     + +  SL++MY +   +     +F+          T+L    I
Sbjct: 302 KEIHGFITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRIFEKDKTYPRCNTTALWNATI 361

Query: 486 AGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           AGY        A  +F  +   + I P+ VTM  VL  C+ S  ++ G K+        G
Sbjct: 362 AGYMENNFVSDAWDVFRSITHGEGINPNTVTMSIVLPLCARSSQLLSG-KEIHCYALRNG 420

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           +  ++     ++D+Y + G L  A+    +M        W +++    IH   G GE A 
Sbjct: 421 LDQEIFVSNGLIDMYSKCGKLKLAENQFNRMMNEKNRISWTSMIDGHGIH---GDGEGAI 477

Query: 605 ---EKLL--ETRPENSGYYVLIA 622
              E ++  E +P++  +  LI+
Sbjct: 478 RVFESMVREEVKPDHITFVALIS 500


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 182/600 (30%), Positives = 310/600 (51%), Gaps = 37/600 (6%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LH+  + LG + N  +   L+  Y+     ++A  + E    +  + W  ++S YV +G+
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNA 214
           + ++L +   M+      +N+T+ + LKA   +   DF + VH  I   C+     V   
Sbjct: 228 FEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+ +Y + G +  A ++F++M + D V W+ MI+ +   G   EA  LF+ M+E  V  N
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPN 347

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
             T ++I  GC                               +G CS      LG+++HG
Sbjct: 348 EFTLSSILNGC------------------------------AIGKCS-----GLGEQLHG 372

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             V+  +     V NALI +Y++C+ +  A  LF   + K+ ++WN+++ GY +L    +
Sbjct: 373 LVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGK 432

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  +FRE  R+ V    VT +S L  CA +A++  G + H   ++     + + + NSL+
Sbjct: 433 AFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNN-AKKVAVSNSLI 491

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MYA+ G +  A+SVF+ M   D  ++ +LI+GY   G GR AL++ + M     KP+ +
Sbjct: 492 DMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGL 551

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           T + VLS CS++GL+ +GQ+ FE M   +GI P LEH+ CMV L GR+G L+KA ++I  
Sbjct: 552 TFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEG 611

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           +PY P+  +W  +L A     N      +AE++L+  P++   YVL++NMYA    W  +
Sbjct: 612 IPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANV 671

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           A +R  M+++GV+K PG +W++       F V  + +   + I  +L  L      AGYV
Sbjct: 672 ASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYV 731



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 212/488 (43%), Gaps = 69/488 (14%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSR----------------------RIRGDNF----- 176
           N+L++ YV+ GF  +AL ++ +M  R                      R+  +       
Sbjct: 88  NILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQDPIGLYSRLHREGHELNPH 147

Query: 177 TYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
            + S LK    +   +    +HS I    ++ + FV  AL++ Y   G VD AR +F+ +
Sbjct: 148 VFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGI 207

Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
           L +D V W  ++S Y   G ++++ +L                      C+R   F    
Sbjct: 208 LCKDIVVWAGIVSCYVENGYFEDSLKLL--------------------SCMRMAGF---- 243

Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
                M    T+  ++   IGLGA          K +HG  ++ CY     V   L+ +Y
Sbjct: 244 -----MPNNYTFDTALKASIGLGA------FDFAKGVHGQILKTCYVLDPRVGVGLLQLY 292

Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
           ++  D+  A+ +F    +  ++ W+ M++ +       E+  LF  M  + V PN  T++
Sbjct: 293 TQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLS 352

Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           SIL  CA       G++ H  +++   F+  + + N+L+++YA+  K+  A  +F  +S 
Sbjct: 353 SILNGCAIGKCSGLGEQLHGLVVKVG-FDLDIYVSNALIDVYAKCEKMDTAVKLFAELSS 411

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           ++EV++ ++I GY   GEG  A  +F E  +NQ+    VT  + L AC+    +  G  Q
Sbjct: 412 KNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGV-Q 470

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
              +        ++     ++D+Y + G +  A+ +  +M  T   A W  L+     H 
Sbjct: 471 VHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEME-TIDVASWNALISGYSTH- 528

Query: 596 NTGIGEWA 603
             G+G  A
Sbjct: 529 --GLGRQA 534



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 7/246 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALG 104
           F   G  ++A + F R+R       VV + F  + I+  C   K    G+QLH   + +G
Sbjct: 323 FCQNGFCNEAVDLFIRMREAF----VVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVG 378

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
            + +  +   L+  YA     + A  L    + +  + WN +I  Y   G   +A  +++
Sbjct: 379 FDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFR 438

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +    ++     T+ S L AC  +  +D G  VH   I   +   + V N+L+ MY K G
Sbjct: 439 EALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCG 498

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            +  A+ +F++M   D  SWN +IS Y++ GL ++A ++   M++   + N +T+  +  
Sbjct: 499 DIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLS 558

Query: 284 GCLRTG 289
           GC   G
Sbjct: 559 GCSNAG 564



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 172/424 (40%), Gaps = 59/424 (13%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVH-------SCIDACHEWSLFVHNALVSMYGKFGQVD 226
           D+  Y ++L+ C +  D    + +H       SC+D      LF  N L++ Y K G   
Sbjct: 48  DSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLD------LFATNILLNAYVKAGFDK 101

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A  LFD+M ER+ VS+ T+   YA     ++   L+  +  EG E+N            
Sbjct: 102 DALNLFDEMPERNNVSFVTLAQGYAC----QDPIGLYSRLHREGHELNPHV--------- 148

Query: 287 RTGNFKGVLELLSRMRTQET--YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
               F   L+L   +   E   +L S    +G  + + VGA                   
Sbjct: 149 ----FTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGA------------------- 185

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
                ALI  YS C  +  A  +F+    K I+ W  ++S Y      E+S  L   M  
Sbjct: 186 -----ALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRM 240

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           +G  PN  T  + L     +      K  H  IL+     +   +   L+++Y + G + 
Sbjct: 241 AGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDP-RVGVGLLQLYTQLGDMS 299

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           +A  VF+ M + D V ++ +IA +   G    A+ LF  M +  + P+  T+ ++L+ C+
Sbjct: 300 DAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCA 359

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
                  G+ Q   +    G    +     ++D+Y +   ++ A ++  ++  +     W
Sbjct: 360 IGKCSGLGE-QLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELS-SKNEVSW 417

Query: 585 ATLL 588
            T++
Sbjct: 418 NTVI 421


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 178/557 (31%), Positives = 295/557 (52%), Gaps = 13/557 (2%)

Query: 105 LEKNPVLVPKLVTFYA-SFSLYNNACFLVENSNIRYPLP-WNLLISLYVRDGFYAEALCV 162
           L  +P  +  L+  YA S S    A  L +  + R  LP WN++I  +       EA+ +
Sbjct: 6   LRTDPSTIYNLIKSYALSPSTILKAHNLFQQIH-RPTLPFWNIMIRGWSVSDQPNEAIRM 64

Query: 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGK 221
           Y  M  + + G+N TY  + KAC  + DV  G  +H+  +    E  L+V NAL++MYG 
Sbjct: 65  YNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGS 124

Query: 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTI 281
            G + +A+++FD+M ERD VSWN+++  Y     ++E   +F  M+  GV+ + +T   +
Sbjct: 125 CGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKV 184

Query: 282 AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341
              C   G +     ++  +      +D       +      G + L + +         
Sbjct: 185 VLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQM----- 239

Query: 342 GEYENVR--NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
            ++ N+   NA+I  Y +  +L  A  LF   +++ +I+W +M++ Y+      E+  LF
Sbjct: 240 -QWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLF 298

Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
           +EM  S V+P+ +T+AS+L  CA   +L  G+  H YI ++      + + N+L++MY +
Sbjct: 299 KEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYI-QKYDVKADIYVGNALIDMYCK 357

Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
            G V +A  VF  M ++D V++TS+I+G  + G    AL  F  M +  ++P H   V +
Sbjct: 358 CGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGI 417

Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
           L AC+H+GLV +G + FE M  +YG+ P+++H+ C+VDL  R+G L +A E I +MP TP
Sbjct: 418 LLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTP 477

Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
              +W  LL A Q+H N  + E A +KLLE  P NSG YVL +N YA +  W+   K+R 
Sbjct: 478 DVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRE 537

Query: 640 CMRDLGVRKIPGCAWVD 656
            M    V+K  G + ++
Sbjct: 538 LMEKSNVQKPSGSSCIE 554



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 190/419 (45%), Gaps = 6/419 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           ++  +   C +V  ++ G  +HA  + LG E +  +   L+  Y S      A  + +  
Sbjct: 79  TYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEM 138

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN L+  Y +   + E L V++ M+   ++GD  T   V+ AC  + +     
Sbjct: 139 PERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVAD 198

Query: 196 VVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +   I+  + E  +++ N L+ MYG+ G V +AR +FD+M  R+ VSWN MI  Y   G
Sbjct: 199 AMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAG 258

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
               A +LF  M +     +VI+W  +     + G F   L L   M   +   D +   
Sbjct: 259 NLVAARELFDAMSQR----DVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVA 314

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             L AC+H G+L +G+  H    +        V NALI MY +C  +  A  +FK   +K
Sbjct: 315 SVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKK 374

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
             ++W S++SG      A+ +   F  M R  V+P++     IL  CA    +  G E+ 
Sbjct: 375 DSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYF 434

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDLMSRRDEVTYTSLIAGYGIQG 492
             + +       +  +  +V++ +RSG +  A + + ++    D V +  L++   + G
Sbjct: 435 ESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHG 493



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 127/255 (49%), Gaps = 17/255 (6%)

Query: 346 NVRNALITMYSRCKD-------LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL 398
           N+R    T+Y+  K        +  A+ LF+     ++  WN M+ G++  D   E+  +
Sbjct: 5   NLRTDPSTIYNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRM 64

Query: 399 FREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458
           +  M+R G+  N +T   +   CARV ++  G   H  +L+   F  HL + N+L+ MY 
Sbjct: 65  YNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLG-FESHLYVSNALINMYG 123

Query: 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518
             G +  A+ VFD M  RD V++ SL+ GYG     R  L +FE M    +K D VTMV 
Sbjct: 124 SCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVK 183

Query: 519 VLSACSHSGL--VVEGQKQFERMTSIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITK 574
           V+ AC+  G   V +    +    ++     +++ +    ++D+YGR GL++ A+ +  +
Sbjct: 184 VVLACTSLGEWGVADAMVDYIEENNV-----EIDVYLGNTLIDMYGRRGLVHLARGVFDQ 238

Query: 575 MPYTPTSAMWATLLG 589
           M +    +  A ++G
Sbjct: 239 MQWRNLVSWNAMIMG 253


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 201/646 (31%), Positives = 319/646 (49%), Gaps = 55/646 (8%)

Query: 74  LDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVE 133
           L S   ++ C    K      Q+H+  I   L   P L   L+  YA     +    L  
Sbjct: 30  LTSLNSLLNCSRTSK---HATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFS 86

Query: 134 NS--NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191
           ++  + +  + W  LI+   R     +AL  +  M+   +  +++T+ +VL AC +    
Sbjct: 87  SAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTAS 146

Query: 192 DFGRVVHSCIDACHEWS------LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNT 245
             G  +HS +     W       +FV +ALV MY K   + +A ++F++M  R       
Sbjct: 147 VHGEQMHSLV-----WKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVR------- 194

Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
                                       N+++WNT+  G L+   +   +     +  + 
Sbjct: 195 ----------------------------NLVSWNTMIVGFLQNKLYDQAIFFFKTLLLEN 226

Query: 306 -TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
            T LD V+      AC++ G L+ GK++HG A++        + N+L  MY +C      
Sbjct: 227 LTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDV 286

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             LF  T  + ++TWN M+  Y +    E++   F  M R G  P+  + +S+L  CA +
Sbjct: 287 AKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANL 346

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
           A L  G   H  I+R   F ++L + +SL+ MYA+ G + +A  +F+    R+ V +T++
Sbjct: 347 AALYQGTLIHNQIIRSG-FVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAI 405

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           IA     G     ++LFE+M +  IKPD++T V+VLSACSH+G V EG   F  M  ++G
Sbjct: 406 IAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHG 465

Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
           I+P  EH+AC+VDL  RAG L++AK  I  MP  P +++W  LL AC+ H N  +G+  A
Sbjct: 466 IYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVA 525

Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
            KL +  P+N G YVL+ N+    G  ++  +VR  M  +GVRK PGC+W+D  N    F
Sbjct: 526 LKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVF 585

Query: 665 LVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC--SEEEIVEE 708
            V D S+ + +EIY +L  L EL+K  GYV + EF   + EE  E+
Sbjct: 586 TVHDKSHEKTKEIYEMLEKLKELVKKKGYVAETEFAINTAEEYKEQ 631



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 132/273 (48%), Gaps = 7/273 (2%)

Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
           Q  +L  + ++  L  CS     K   +IH   +         + N L+ +Y++C  +  
Sbjct: 23  QTPFLHPLTSLNSLLNCSRTS--KHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQ 80

Query: 364 AYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
             +LF    +  K++++W S+++  T      ++   F  M RSGV PN+ T +++L  C
Sbjct: 81  TLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSAC 140

Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
                  HG++ H  + +     E + + ++LV+MYA+   +  A+ VF+ M  R+ V++
Sbjct: 141 TDTTASVHGEQMHSLVWKHGFLAE-VFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSW 199

Query: 482 TSLIAGYGIQGEGRVALKLFEE-MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540
            ++I G+        A+  F+  + +N    D V+  +V SAC+++G  +E  KQ   + 
Sbjct: 200 NTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAG-NLEFGKQVHGVA 258

Query: 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
              G++  +     + D+YG+ GL N   ++ +
Sbjct: 259 LKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFS 291


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/438 (36%), Positives = 253/438 (57%), Gaps = 6/438 (1%)

Query: 259 AFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE-TYLDSVATVIGL 317
           A ++F ++++    +NV  WNT+  G    GN      L   MR       D+      +
Sbjct: 72  AHKVFSKIEKP---INVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 318 GACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377
            A + +  ++LG+ IH   +R  +G    V+N+L+ +Y+ C D+  AY +F    EK ++
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
            WNS+++G+      EE+  L+ EM   G++P+  TI S+L  CA++  L  GK  H Y+
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497
           ++  +   +L   N L+++YAR G+V EAK++FD M  ++ V++TSLI G  + G G+ A
Sbjct: 249 IKVGL-TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307

Query: 498 LKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556
           ++LF+ M   + + P  +T V +L ACSH G+V EG + F RM   Y I P++EHF CMV
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMV 367

Query: 557 DLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616
           DL  RAG + KA E I  MP  P   +W TLLGAC +H ++ + E+A  ++L+  P +SG
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSG 427

Query: 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQE 676
            YVL++NMYA+   W  + K+R  M   GV+K+PG + V+ GN    FL+ D S+ Q+  
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDA 487

Query: 677 IYPLLGGLTELMKDAGYV 694
           IY  L  +T  ++  GYV
Sbjct: 488 IYAKLKEMTGRLRSEGYV 505



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 207/449 (46%), Gaps = 56/449 (12%)

Query: 87  VKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL-------YNNACFLVENSNIRY 139
           V ++ + +Q+HA +I  G+  +   + K + FY   SL       Y +  F    S I  
Sbjct: 27  VSSITKLRQIHAFSIRHGVSISDAELGKHLIFYL-VSLPSPPPMSYAHKVF----SKIEK 81

Query: 140 PLP---WNLLISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           P+    WN LI  Y   G    A  +Y++M+ S  +  D  TYP ++KA   M DV  G 
Sbjct: 82  PINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGE 141

Query: 196 VVHSCIDACHEWSL-FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +HS +      SL +V N+L+ +Y   G V  A ++FDKM E+D V+WN++I+ +A  G
Sbjct: 142 TIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG 201

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA  L+ EM  +G++ +  T                ++ LLS               
Sbjct: 202 KPEEALALYTEMNSKGIKPDGFT----------------IVSLLS--------------- 230

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
               AC+ +GAL LGK +H   ++       +  N L+ +Y+RC  +  A  LF    +K
Sbjct: 231 ----ACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK 286

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRS-GVEPNYVTIASILPLCARVANLQHGKEF 433
           + ++W S++ G       +E+  LF+ M  + G+ P  +T   IL  C+    ++ G E+
Sbjct: 287 NSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEY 346

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVT-YTSLIAGYGIQG 492
              +         +  +  +V++ AR+G+V +A      M  +  V  + +L+    + G
Sbjct: 347 FRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406

Query: 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLS 521
           +  +A   F  +   Q++P+H     +LS
Sbjct: 407 DSDLA--EFARIQILQLEPNHSGDYVLLS 433



 Score = 45.8 bits (107), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 41/248 (16%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFA--HIIFCCGKVKALAQGKQLHACAIALG 104
           FA  G   +A   +T +     S  +  D F    ++  C K+ AL  GK++H   I +G
Sbjct: 197 FAENGKPEEALALYTEMN----SKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG 252

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
           L +N      L+  YA       A  L +    +  + W  LI     +GF  EA+ ++K
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFK 312

Query: 165 QMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFG 223
            M+S   +     T+  +L AC     V  G            +  F             
Sbjct: 313 YMESTEGLLPCEITFVGILYACSHCGMVKEG------------FEYF------------- 347

Query: 224 QVDVARRLFDK-MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
                RR+ ++  +E     +  M+   A  G  K+A++    M    ++ NV+ W T+ 
Sbjct: 348 -----RRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP---MQPNVVIWRTLL 399

Query: 283 GGCLRTGN 290
           G C   G+
Sbjct: 400 GACTVHGD 407


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 180/600 (30%), Positives = 311/600 (51%), Gaps = 37/600 (6%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LH+  + LG + N  +   L+  Y+     ++A  + E    +  + W  ++S YV +G 
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGC 227

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNA 214
           + ++L +  +M       +N+T+ + LKA   +    F + VH  I   C+E    V   
Sbjct: 228 FEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG 287

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           L+ +Y + G +  A ++F++M + D V W+ MI+ +   G   +A  +F+ M+E  V  N
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPN 347

Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
             T ++I  GC                               +G CS      LG+++HG
Sbjct: 348 EFTLSSILNGC------------------------------AIGKCS-----GLGEQLHG 372

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             V+  +     V NALI +Y++C+ +  A  LF   + K++++WN+++ GY +L    +
Sbjct: 373 LVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGK 432

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  +FRE  R+ V    VT +S L  CA +A+++ G + H   ++     + + + NSL+
Sbjct: 433 ALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNN-AKRVAVSNSLI 491

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
           +MYA+ G +  A++VF+ M   D  ++ +LI+GY   G GR AL++F+ M  +  KP+ +
Sbjct: 492 DMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGL 551

Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
           T + VLS CS++GL+ +GQ  FE M   +GI P LEH+ CMV L+GR+G L+KA  +I  
Sbjct: 552 TFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEG 611

Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
           +PY P+  +W  +L A     N      +AE++L+  P++   YVL++NMYA    W  +
Sbjct: 612 IPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANV 671

Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           A +R  M++ GV+K PG +W++       F V  + +   + I  +L  L      AGYV
Sbjct: 672 ASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGYV 731



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 213/465 (45%), Gaps = 23/465 (4%)

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203
           N+L++ YV+ GF  +AL ++ +M  R    +N +Y ++ +       V     +H     
Sbjct: 88  NILLNAYVKAGFDKDALNLFDEMPER----NNVSYVTLTQGYACQDPVGLYSRLHR---E 140

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKML----ERDAVSWNTMISAYASKGLWKEA 259
            HE +  V  + + ++    + ++   L   ++    + +A     +I+AY+  G    A
Sbjct: 141 GHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSA 200

Query: 260 FQLFVEMQEEGVEV-NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
             +F     EG+   +++ W  I    +  G F+  L+LLSRM       ++      L 
Sbjct: 201 RSVF-----EGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALK 255

Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           A   +GA    K +HG  ++ CY     V   L+ +Y++  D+  A+ +F    +  ++ 
Sbjct: 256 ASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVP 315

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           W+ M++ +       ++  +F  M    V PN  T++SIL  CA       G++ H  ++
Sbjct: 316 WSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV 375

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +   F+  + + N+L+++YA+  K+  A  +F  +S ++ V++ ++I GY   GEG  AL
Sbjct: 376 KVG-FDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKAL 434

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
            +F E  +NQ+    VT  + L AC+ S   +E   Q   +        ++     ++D+
Sbjct: 435 NMFREALRNQVSVTEVTFSSALGACA-SLASMELGVQVHGLAIKTNNAKRVAVSNSLIDM 493

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWA 603
           Y + G +  A+ +  +M  T   A W  L+     H   G+G  A
Sbjct: 494 YAKCGDIKVAQTVFNEME-TIDVASWNALISGYSTH---GLGRQA 534



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 7/246 (2%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALG 104
           F   G  +KA + F R+R       VV + F  + I+  C   K    G+QLH   + +G
Sbjct: 323 FCQNGFCNKAVDIFIRMR----EGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVG 378

Query: 105 LEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
            + +  +   L+  YA     + A  L    + +  + WN +I  Y   G   +AL +++
Sbjct: 379 FDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFR 438

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +    ++     T+ S L AC  +  ++ G  VH   I   +   + V N+L+ MY K G
Sbjct: 439 EALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCG 498

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
            + VA+ +F++M   D  SWN +IS Y++ GL ++A ++F  M+    + N +T+  +  
Sbjct: 499 DIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLS 558

Query: 284 GCLRTG 289
           GC   G
Sbjct: 559 GCSNAG 564



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 171/424 (40%), Gaps = 59/424 (13%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVH-------SCIDACHEWSLFVHNALVSMYGKFGQVD 226
           D+  Y ++L+ C    D    + +H       SC+D      LF  N L++ Y K G   
Sbjct: 48  DSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLD------LFATNILLNAYVKAGFDK 101

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A  LFD+M ER+ VS+ T+   YA     ++   L+  +  EG E+N            
Sbjct: 102 DALNLFDEMPERNNVSYVTLTQGYAC----QDPVGLYSRLHREGHELNPHV--------- 148

Query: 287 RTGNFKGVLELLSRMRTQET--YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
               F   L+L   +   E   +L S    +G  + + VGA                   
Sbjct: 149 ----FTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGA------------------- 185

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
                ALI  YS C  +  A  +F+    K I+ W  ++S Y    C E+S  L   M  
Sbjct: 186 -----ALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGM 240

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
            G  PN  T  + L     +      K  H  IL+   +     +   L+++Y + G + 
Sbjct: 241 DGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTC-YELDPRVGVGLLQLYTQLGDMS 299

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
           +A  VF+ M + D V ++ +IA +   G    A+ +F  M +  + P+  T+ ++L+ C+
Sbjct: 300 DAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCA 359

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
                  G+ Q   +    G    +     ++D+Y +   ++ A ++  ++  +     W
Sbjct: 360 IGKCSGLGE-QLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELS-SKNVVSW 417

Query: 585 ATLL 588
            T++
Sbjct: 418 NTVI 421


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 177/566 (31%), Positives = 295/566 (52%), Gaps = 39/566 (6%)

Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID--ACHEWSLFV 211
           G   EAL    ++  R IR     +  +L+ C +      G+ VH  +        +  V
Sbjct: 41  GRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIV 100

Query: 212 HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
            N L+ MY + G+   AR++FDKM  R+  SWN M++ YA  G    A +LF  M E+  
Sbjct: 101 ANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEK-- 158

Query: 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKE 331
             +V++WNTI     + G F   + L    R  +   ++ +    L  C  +  L+L K+
Sbjct: 159 --DVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQ 216

Query: 332 IHGSAVRGCYGEYENVRNALITMYSRCKDLR--------------HAYI----------- 366
           +HG  +   +     + ++++  YS+C ++R              HA+            
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGD 276

Query: 367 ------LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420
                 LF    EK+ ++W++++SGY       E+   F +M + G+ P   T +S L  
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEV 479
           CA +A L+HGK+ H Y++R   F  + ++ +SL++MY++ G +  +  VF LM +++D V
Sbjct: 337 CASIAALKHGKQVHGYLIR-TYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVV 395

Query: 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539
            + ++I+     G G  A+++F +M ++ +KPD +T + +LSACSHSGLV EG + F+ M
Sbjct: 396 VWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAM 455

Query: 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGI 599
           T  +G+FP  EH+AC++DL GRAG   +    +  M   P   +W+ LLG C+IH N  +
Sbjct: 456 TYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIEL 515

Query: 600 GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659
           G   AE+++E +P++S  YV +A++YA  G W+ + KVR  M +  +RK  G +W+D GN
Sbjct: 516 GRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGN 575

Query: 660 VFSPFLVDDTSNVQAQEIYPLLGGLT 685
               F+  D  +   +EIY LL  L 
Sbjct: 576 KTHSFIASDRLHPLKEEIYLLLEQLA 601



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 33/247 (13%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV------------------- 116
           SFA ++  C K+K L   KQ+H   +  G   N VL   +V                   
Sbjct: 197 SFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEM 256

Query: 117 ------------TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYK 164
                       + YA +   N+A  L      + P+ W+ LIS Y R+    EAL  + 
Sbjct: 257 LVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFT 316

Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFG 223
           +M    I  + +T+ S L AC  +  +  G+ VH   I      +  V ++L+ MY K G
Sbjct: 317 KMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCG 376

Query: 224 QVDVARRLFDKM-LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            ++ +  +F  M  ++D V WNTMISA A  G  ++A Q+F +M E G++ + IT+  I 
Sbjct: 377 MLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVIL 436

Query: 283 GGCLRTG 289
             C  +G
Sbjct: 437 SACSHSG 443


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 183/519 (35%), Positives = 277/519 (53%), Gaps = 38/519 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y SVL++C     +  GR +H   + +       +   LV +Y   G V  ARRLFD M 
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           +R+   WN +I AYA  G  + A QL+  M + GVE +  T             +   L+
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFT-------------YPLALK 171

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
             + +   ET                      G+E+H   +   +GE   V   L+ MY+
Sbjct: 172 ACAALLDLET----------------------GREVHERVLGTHWGEDMFVCAGLVDMYA 209

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +C  +  A  +F     +  + WNSM++ Y       E+  L R+M  +GV P   T+ S
Sbjct: 210 KCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVS 269

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
            +   A  A L  G+E H +  RR  F+    L  SLV+MYA+SG V  A+ +F+ + +R
Sbjct: 270 TISAAADAAALPRGRELHGFGWRRG-FDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKR 328

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMN-KNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           + V++ ++I GYG+ G    ALKLF +M  + Q+ PD++T V VLSAC+H G+V E ++ 
Sbjct: 329 ELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEF 388

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  M  +Y I P ++HF C+VD+ G AG   +A ++I  MP  P S +W  LL  C+IH+
Sbjct: 389 FGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHK 448

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  +GE A +KL+E  PE++G YVL++N+YA +G W+K A+VR  M + G++KI GC+W+
Sbjct: 449 NVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWI 508

Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
           +       FLV D S+ ++ EIY  L  L  LM DAGY+
Sbjct: 509 ELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYM 547



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 203/435 (46%), Gaps = 43/435 (9%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           +  ++  C   ++L  G+QLH   +  GL  + VL  KLV  YA+  L  +A  L +   
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRV 196
            R    WN+LI  Y RDG +  A+ +Y+ M    +  DNFTYP  LKAC  ++D++ GR 
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 197 VHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           VH  +   H W   +FV   LV MY K G VD AR +FD++  RD+V WN+MI+AY   G
Sbjct: 185 VHERVLGTH-WGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNG 243

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
              EA  L  +M   GV   + T                                    V
Sbjct: 244 RPMEALSLCRDMAANGVGPTIAT-----------------------------------LV 268

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
             + A +   AL  G+E+HG   R  +   + ++ +L+ MY++   ++ A +LF+   ++
Sbjct: 269 STISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKR 328

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEF 433
            +++WN+M+ GY      +E+  LF +M   + V P+ +T   +L  C     ++  KEF
Sbjct: 329 ELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEF 388

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQG 492
              ++        +  +  LV++   +G+  EA  +   M  + D   + +L+ G  I  
Sbjct: 389 FGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHK 448

Query: 493 E---GRVALKLFEEM 504
               G +AL+   E+
Sbjct: 449 NVELGELALQKLIEL 463


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/518 (33%), Positives = 284/518 (54%), Gaps = 38/518 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y + + AC E   +  GR VH+  I A +  ++F+   LV+MY + G +D AR + D+M 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           ER  VSW TMIS Y+      EA  LF++M   G   N  T  T+               
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATV--------------- 117

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                               L +CS   ++  GK++H   V+  +  +  V ++L+ MY+
Sbjct: 118 --------------------LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA 157

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           + ++++ A  +F    E+ +++  +++SGY      EE+  LFR+++  G++ N+VT  +
Sbjct: 158 KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTT 217

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           ++   + +A+L +GK+ H  ILR+ +    + L NSL++MY++ GK+  ++ VFD M  R
Sbjct: 218 LVTALSGLASLDYGKQVHALILRKEL-PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER 276

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
             V++ +++ GYG  G G   + LF++++K ++KPD VT++AVLS CSH GLV EG   F
Sbjct: 277 SVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLDIF 335

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           + +           H+ C++DL GR+G L KA  +I  MP+  T ++W +LLGAC++H N
Sbjct: 336 DTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHAN 395

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             +GE  A+KLLE  PEN+G YV+++N+YAA G W  + KVR  M +  V K PG +W+ 
Sbjct: 396 VHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWII 455

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
              V   F   +  +   ++I   +  +   +K AG+V
Sbjct: 456 LDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFV 493



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 191/394 (48%), Gaps = 37/394 (9%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP 140
           I  C + +AL +G+Q+HA  I         L  +LVT Y      ++A  +++    R  
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + W  +IS Y +   + EAL ++ +M       + +T  +VL +C     +  G+ VHS 
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 201 -IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    E  +FV ++L+ MY K   +  ARR+FD + ERD VS   +IS YA KGL +EA
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 196

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             LF ++  EG++ N +T+ T+                                   + A
Sbjct: 197 LDLFRQLYSEGMQCNHVTFTTL-----------------------------------VTA 221

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
            S + +L  GK++H   +R     +  ++N+LI MYS+C  L ++  +F    E+S+++W
Sbjct: 222 LSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSW 281

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+ML GY       E   LF+++ +  V+P+ VT+ ++L  C+    +  G +    +++
Sbjct: 282 NAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVK 340

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
                 H   +  ++++  RSG++ +A ++ + M
Sbjct: 341 EQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM 374



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 42/291 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  C   +++ QGKQ+H+  +    E +  +   L+  YA       A  + +  
Sbjct: 113 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 172

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  +    +IS Y + G   EAL +++Q+ S  ++ ++ T+ +++ A   +  +D+G+
Sbjct: 173 PERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGK 232

Query: 196 VVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            VH+ I    E   FV   N+L+ MY K G++  +RR+FD MLER  VSWN M+  Y   
Sbjct: 233 QVHALI-LRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRH 291

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC-----------------------LRTGN 290
           GL  E   LF ++ +E V+ + +T   +  GC                       L TG+
Sbjct: 292 GLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGH 350

Query: 291 FKGVLELLSRMRTQETYL--------DSVATVIG--LGACS-----HVGAL 326
           +  +++LL R    E  L        +S  ++ G  LGAC      HVG L
Sbjct: 351 YGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGEL 401


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 190/605 (31%), Positives = 313/605 (51%), Gaps = 48/605 (7%)

Query: 93  GKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVR 152
           G+Q+H+  + +G E++      L+  YA      +A  + +   +R  + WN LI  +V+
Sbjct: 121 GQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQ 180

Query: 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD-FGRVVHS--CIDACHEWSL 209
            G    A  +   MQ   +R ++ T+  +L     ++D D F ++     C    H    
Sbjct: 181 VGDRDTAFWLLDCMQKEGVRVEDGTFAPLLT----LLDGDKFYKLTMQLHCKIIKHGLEF 236

Query: 210 F--VHNALVSMYGKFGQVDVARRLFDKML-ERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
           +  + NA ++ Y + G ++ A+R+FD  +  RD V+WN+M+ AY      ++AF LF+EM
Sbjct: 237 YNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEM 296

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
           Q  G E ++ T+  +   C                                 A +H    
Sbjct: 297 QGFGFEPDIYTYTCVISACF--------------------------------AAAHK--- 321

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRC--KDLRHAYILFKMTAEKSIITWNSMLS 384
             GK  H   ++    E   + NALITMY +   K +  A  LF     K  ++WNS+L+
Sbjct: 322 NYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILT 381

Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
           G++ +  +E++  LF  M  S  E +    +++L  C+ +A LQ G++ H   ++   F+
Sbjct: 382 GFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTG-FD 440

Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
            +  + +SL+ MY++ G + +A   F+  ++   +T+ S++  Y   G+G VAL LF  M
Sbjct: 441 SNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIM 500

Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
            + ++K DHVT VAVL+ACSH GLV +G+   + M S YGI P++EH+AC VDL+GRAG 
Sbjct: 501 REREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGY 560

Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
           L +AK +I  MP+ P + +  TLLGAC+   N  +    A +LLE  PE    YV+++NM
Sbjct: 561 LEEAKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNM 620

Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
           Y     WD  A V   MR+  V+K+PG +W++  N    F  +D S+  ++++Y +LG L
Sbjct: 621 YGHLKRWDDKASVTRLMRERKVKKVPGWSWIEVKNEVHAFKAEDRSHPYSEDVYQILGEL 680

Query: 685 TELMK 689
            E MK
Sbjct: 681 MEEMK 685



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 210/473 (44%), Gaps = 42/473 (8%)

Query: 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
           N AC L +    +  + WN +I+ YV  G    A    K M+ R  + D +T+ S+LK  
Sbjct: 53  NLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRGFQADGYTFGSILKGV 112

Query: 186 GEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
                 D G+ VHS I    +E S++  +AL+ MY K  +V+ A  +F  M  R+ VSWN
Sbjct: 113 AHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWN 172

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
            +I  +   G    AF L   MQ+EGV V               G F  +L LL   +  
Sbjct: 173 ALIDGFVQVGDRDTAFWLLDCMQKEGVRV-------------EDGTFAPLLTLLDGDKF- 218

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
                                 KL  ++H   ++     Y  + NA +T YS C  L  A
Sbjct: 219 ---------------------YKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDA 257

Query: 365 YILFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
             +F      + ++TWNSML  Y   D  E++  LF EM   G EP+  T   ++  C  
Sbjct: 258 KRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFA 317

Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR--SGKVPEAKSVFDLMSRRDEVTY 481
            A+  +GK FH  +++R +  E + + N+L+ MY +  +  +  A ++F  M  +D V++
Sbjct: 318 AAHKNYGKSFHALVIKRGL-EESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSW 376

Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
            S++ G+   G    ALKLF  M  +  + D     AVL +CS   ++  GQ Q   +T 
Sbjct: 377 NSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQ-QIHLLTV 435

Query: 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
             G        + ++ +Y + G++  A +         +S  W +++ A   H
Sbjct: 436 KTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTT-KESSITWNSIMFAYAQH 487



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 56  AFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
           AF  F  ++      D+   ++  +I  C        GK  HA  I  GLE++  +   L
Sbjct: 289 AFNLFLEMQGFGFEPDIY--TYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNAL 346

Query: 116 VTFYASFSLYNN-----ACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
           +T Y      NN     A  L  +   +  + WN +++ + + GF  +AL ++  M+S  
Sbjct: 347 ITMYLKL---NNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSL 403

Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVAR 229
              D++ Y +VL++C ++  +  G+ +H   +    + + FV ++L+ MY K G ++ A 
Sbjct: 404 EEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAW 463

Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
           + F+   +  +++WN+++ AYA  G    A  LF  M+E  V+++ +T+  +   C   G
Sbjct: 464 KCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVG 523



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 123/270 (45%), Gaps = 10/270 (3%)

Query: 6   SRLILNGLSVSQLEKFIPKKWKQPINNEHIM----RINLLETLKDFAGRGNLSKAFEAFT 61
           S  I N L ++   K   K  +  +N  H M    R++    L  F+  G    A + F 
Sbjct: 339 SVTICNAL-ITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFG 397

Query: 62  RIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYAS 121
            +R +    D    +++ ++  C  +  L  G+Q+H   +  G + N  +   L+  Y+ 
Sbjct: 398 HMRSSLEEIDDY--AYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSK 455

Query: 122 FSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV 181
             +  +A    E++     + WN ++  Y + G    AL ++  M+ R ++ D+ T+ +V
Sbjct: 456 CGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAV 515

Query: 182 LKACGEMMDVDFGRVVHSCIDACHEWS--LFVHNALVSMYGKFGQVDVARRLFDKM-LER 238
           L AC  +  V+ GR V   +++ +     +  +   V ++G+ G ++ A+ L D M  + 
Sbjct: 516 LTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQP 575

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQE 268
           +A+   T++ A  + G  + A Q+  ++ E
Sbjct: 576 NAMVLKTLLGACRACGNIELAAQVASQLLE 605



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYAR--SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           HC   +  + + H+ + N+++  Y++  SG +  A  +FD M  +D VT+ ++I GY   
Sbjct: 22  HCQAFKSGIIS-HIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVES 80

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G    A +  + M +   + D  T  ++L   +H+     GQ+    +  I G    +  
Sbjct: 81  GNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKI-GYEQSVYA 139

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI-HRNTGI 599
            + ++D+Y +   +  A ++   MP     +  A + G  Q+  R+T  
Sbjct: 140 GSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAF 188


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 194/619 (31%), Positives = 312/619 (50%), Gaps = 56/619 (9%)

Query: 88  KALAQGKQLHACAIAL--GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
           K L  GK +HA  I      + N V V  L+  YA       A  L +    R  + W  
Sbjct: 39  KNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGA 98

Query: 146 LISLYVRDGFYAEALCVYKQMQS-RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC 204
           L++ Y  +G   E L ++K M S   +R + + + +++ +C      D G+VV      C
Sbjct: 99  LMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCS-----DSGQVVEGW--QC 151

Query: 205 HEWSL--------FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H ++L        +V NAL+ MY +   V  A  ++                 Y   GL 
Sbjct: 152 HGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVW-----------------YEVPGL- 193

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
                            +V ++N I  G L  G     LE+L RM  +    D+V  V  
Sbjct: 194 -----------------DVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTA 236

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALITMYSRCKDLRHAYILFKMTAEKS 375
            G CSH+  L+LG ++H    R    EY++ V +A+I MY +C ++ +A  +F     K+
Sbjct: 237 FGLCSHLKDLRLGLQVHCRMFRTG-AEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKN 295

Query: 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHC 435
           +++W ++L+ Y+   C EE+   F EM   G+ PN  T A +L  CA ++ L HGK  H 
Sbjct: 296 VVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHT 355

Query: 436 YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGR 495
            I +++ F +H+++ N+L+ MY++SG +  A  VF  M  RD +T++++I G    G GR
Sbjct: 356 RI-KKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGR 414

Query: 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM 555
            AL +F+EM   +  P +VT V VLSAC+H G V EG     ++    GI P +EH+ C+
Sbjct: 415 EALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCI 474

Query: 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615
           V L  +AG L++A+  +   P       W TLL AC +H+N G+G+  AE +L+  P + 
Sbjct: 475 VGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDV 534

Query: 616 GYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQ 675
           G Y+L++NMYA    WD + K+R  MR+  V+K PG +W++  N    F+ +  ++ ++ 
Sbjct: 535 GTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESN 594

Query: 676 EIYPLLGGLTELMKDAGYV 694
           +IY  +  L  +++  GYV
Sbjct: 595 QIYEKVQELLTMIRPMGYV 613



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 129/273 (47%), Gaps = 10/273 (3%)

Query: 51  GNLSKAFEAFTRIRITAASHDVVLDSFAHIIF--CCGKVKALAQGKQLHACAIALGLEKN 108
           G  S+A E   R+        +V D+  ++     C  +K L  G Q+H      G E +
Sbjct: 209 GYPSEALEVLDRM----VDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYD 264

Query: 109 PVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168
             +   ++  Y       NA  +      +  + W  +++ Y ++G + EAL  + +M+ 
Sbjct: 265 SFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEV 324

Query: 169 RRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDV 227
             +  + +T+  +L +C  +  +  G+++H+ I  +  E  + V NAL++MY K G ++ 
Sbjct: 325 DGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEA 384

Query: 228 ARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287
           A ++F +M+ RD+++W+ MI   +  GL +EA  +F EM       + +T+  +   C  
Sbjct: 385 AHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAH 444

Query: 288 TGNFKGVLELLSRMRTQ---ETYLDSVATVIGL 317
            G+ +     L+++  Q   E  ++    ++GL
Sbjct: 445 LGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGL 477


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 188/631 (29%), Positives = 328/631 (51%), Gaps = 57/631 (9%)

Query: 63  IRITAASHDVVLDSFAH---IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
           +R+ +A   VV D+F +   + FC G  +    G QL +  +  GLE + V+    +T Y
Sbjct: 88  VRMKSAG--VVFDAFTYSTALSFCVGS-EGFRLGLQLQSTVVKSGLESDLVVGNSFITMY 144

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA-EALCVYKQMQSRRIRGDNFTY 178
           +    +  A  + +    +  + WN L+S   ++G +  EA+ +++ M    +  D+ ++
Sbjct: 145 SRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDHVSF 204

Query: 179 PSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
            SV+  C    D+   R +H  CI   +E  L V N L+S Y K G ++  + +F +M E
Sbjct: 205 TSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFYQMSE 264

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           R+ VSW TMIS+        +A  +F+ M+ +GV  N +T+                + L
Sbjct: 265 RNVVSWTTMISSNRD-----DAVSIFLNMRLDGVYPNEVTF----------------VGL 303

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
           L+ ++  E                    +K G +IHG  ++  +    +V N+ ITMY++
Sbjct: 304 LNAVKCNEQ-------------------IKEGLKIHGLCIKTGFVSEPSVGNSFITMYAK 344

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
            + L  A   F     + II+WN+M+SG+     + E+  +F     +   PN  T  S+
Sbjct: 345 FEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLSA-TAETMPNEYTFGSV 403

Query: 418 LPLCARVANL--QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           L   A   ++  +HG+  H ++L+  + N   ++ ++L++MYA+ G + E++ VF+ MS+
Sbjct: 404 LNAIAFAEDISVKHGQRCHAHLLKLGL-NSCPVVSSALLDMYAKRGNINESEKVFNEMSQ 462

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           R++  +TS+I+ Y   G+    + LF EM K  + PD VT ++VL+AC+  G+V +G + 
Sbjct: 463 RNQFVWTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVLTACNRKGMVDKGHEI 522

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
              M   Y + P  EH++CMVD+ GRAG L +A+E+++++P  P  +M  ++LG+C++H 
Sbjct: 523 LNMMIEDYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHG 582

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  +G   AE  +E +PE SG YV + N+YA    WDK A++R  MR   V K  G +W+
Sbjct: 583 NVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEQWDKAAEIRKAMRKKNVSKEAGFSWI 642

Query: 656 DAGN-----VFSPFLVDDTSNVQAQEIYPLL 681
           D G+         F   D S+ ++ EIY ++
Sbjct: 643 DVGDTEGSLTMQGFSSGDKSHPKSDEIYRMV 673



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 161/363 (44%), Gaps = 48/363 (13%)

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF-VHNALVSMYGKFGQVDVARRLF 232
           D  T    LKAC    D+  G  +H     C   S   V NA++ MY K G+ D A  +F
Sbjct: 2   DEVTLCLALKAC--RGDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYIF 59

Query: 233 DKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFK 292
           + +++ D                                   V++WNTI  G     + +
Sbjct: 60  ENLVDPD-----------------------------------VVSWNTILSG---FDDNQ 81

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
             L  + RM++     D+      L  C      +LG ++  + V+        V N+ I
Sbjct: 82  IALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFRLGLQLQSTVVKSGLESDLVVGNSFI 141

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC-AEESAFLFREMFRSGVEPNY 411
           TMYSR    R A  +F     K +I+WNS+LSG +       E+  +FR+M R GVE ++
Sbjct: 142 TMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDH 201

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           V+  S++  C    +L+  ++ H   ++R  +   L + N L+  Y++ G +   KSVF 
Sbjct: 202 VSFTSVITTCCHETDLKLARQIHGLCIKRG-YESLLEVGNILMSRYSKCGVLEAVKSVFY 260

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            MS R+ V++T++I+          A+ +F  M  + + P+ VT V +L+A   +  + E
Sbjct: 261 QMSERNVVSWTTMIS-----SNRDDAVSIFLNMRLDGVYPNEVTFVGLLNAVKCNEQIKE 315

Query: 532 GQK 534
           G K
Sbjct: 316 GLK 318



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 141/284 (49%), Gaps = 9/284 (3%)

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
           +D V   + L AC   G LK G +IHG +    +  +  V NA++ MY +     +A  +
Sbjct: 1   MDEVTLCLALKACR--GDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYI 58

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F+   +  +++WN++LSG+     A    F+ R M  +GV  +  T ++ L  C      
Sbjct: 59  FENLVDPDVVSWNTILSGFDDNQIALN--FVVR-MKSAGVVFDAFTYSTALSFCVGSEGF 115

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
           + G +    +++  + ++ L++ NS + MY+RSG    A+ VFD M  +D +++ SL++G
Sbjct: 116 RLGLQLQSTVVKSGLESD-LVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSG 174

Query: 488 YGIQGE-GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
              +G  G  A+ +F +M +  ++ DHV+  +V++ C H    ++  +Q   +    G  
Sbjct: 175 LSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHE-TDLKLARQIHGLCIKRGYE 233

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             LE    ++  Y + G+L   K +  +M      + W T++ +
Sbjct: 234 SLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVS-WTTMISS 276


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 189/624 (30%), Positives = 312/624 (50%), Gaps = 43/624 (6%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F +++       AL +GK +H+C        +  +   LV  Y       +A  + +  
Sbjct: 12  TFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGM 71

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R    WN +IS Y       EA  ++++MQ    R D  T+ S+L AC    ++  G+
Sbjct: 72  PCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGK 131

Query: 196 VVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            V   I +   E  LFV  AL++MY +    + A ++F +M +++ ++W+ +I+A+A  G
Sbjct: 132 HVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHG 191

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR--TQETYLDSVA 312
              EA + F  MQ+EG+  N +T+ ++  G          LE LSR+     E  LD   
Sbjct: 192 HCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSG----LEELSRIHLLITEHGLDDTT 247

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK--DLRHAYILFKM 370
           T+                                  NAL+ +Y RC+  +L  A ++ + 
Sbjct: 248 TM---------------------------------SNALVNVYGRCETGELDVAEVILQE 274

Query: 371 TAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
             E+ I  WN +++GYT    + E+   ++ +    +  + VT  S+L  C    +L  G
Sbjct: 275 MDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG 334

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
           K  H   +   + +  +++ N+L  MY++ G +  A+ +FD M  R  V++  ++  Y  
Sbjct: 335 KMIHSNAVECGL-DSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQ 393

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            GE    LKL  +M +  +K + +T V+VLS+CSH+GL+ EG + F  +    GI  + E
Sbjct: 394 HGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTE 453

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H+ C+VDL GRAG L +A++ I+KMP  P    WA+LLGAC++H++   G+ AA KLLE 
Sbjct: 454 HYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLEL 513

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P NS   V+++N+Y+  G W   AK+R  M    V+K+PG + +   N    F V DTS
Sbjct: 514 DPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTS 573

Query: 671 NVQAQEIYPLLGGLTELMKDAGYV 694
           + +A EIY  +  L   M++AGYV
Sbjct: 574 HPRAAEIYDKVEELCFAMREAGYV 597



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 208/477 (43%), Gaps = 55/477 (11%)

Query: 55  KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +AF  F R++      D V  +F  I+  C   + L  GK +         E +  +   
Sbjct: 94  EAFFIFQRMQHEGERCDRV--TFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTA 151

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+T YA      NA  +      +  + W+ +I+ +   G   EAL  ++ MQ   I  +
Sbjct: 152 LITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPN 211

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGK--FGQVDVARRL 231
             T+ S+L        ++    +H  I +   + +  + NALV++YG+   G++DVA  +
Sbjct: 212 RVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVI 271

Query: 232 FDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
             +M E+   +WN +I+ Y   G  +EA + +  +Q E + V+ +T+ ++          
Sbjct: 272 LQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISV---------- 321

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
                                    L AC+   +L  GK IH +AV         V+NAL
Sbjct: 322 -------------------------LNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNAL 356

Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
             MYS+C  + +A  +F     +S ++WN ML  Y     +EE   L R+M + GV+ N 
Sbjct: 357 TNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNG 416

Query: 412 VTIASILPLCARVANLQHG-KEFHCYILRRAM--FNEHLLLWNSLVEMYARSGKVPEAKS 468
           +T  S+L  C+    +  G + FH     R +    EH   +  LV++  R+GK+ EA+ 
Sbjct: 417 ITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEH---YGCLVDLLGRAGKLQEAEK 473

Query: 469 VFDLMSRRDE-VTYTSLIAGYGIQGE---GRVALKLFEEMNKNQIKPDHVTMVAVLS 521
               M    E VT+ SL+    +  +   G++A +   E++     P + +   VLS
Sbjct: 474 YISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELD-----PGNSSASVVLS 525



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 7/225 (3%)

Query: 28  QPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKV 87
           Q ++ + I   N+L  +  +   G   +A E + R+++ A   D V  +F  ++  C   
Sbjct: 273 QEMDEQQITAWNVL--INGYTLHGRSREALETYQRLQLEAIPVDKV--TFISVLNACTSS 328

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
            +LA+GK +H+ A+  GL+ + ++   L   Y+      NA  + ++  IR  + WN ++
Sbjct: 329 TSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGML 388

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-RVVHSC-IDACH 205
             Y + G   E L + ++M+   ++ +  T+ SVL +C     +  G +  HS   D   
Sbjct: 389 QAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGI 448

Query: 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
           E     +  LV + G+ G++  A +   KM  E + V+W +++ A
Sbjct: 449 EVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGA 493


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 194/637 (30%), Positives = 309/637 (48%), Gaps = 49/637 (7%)

Query: 57  FEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
           +E    + + A   ++ LD F  A  +  CG+   L  GK LH   +  GL +   L+  
Sbjct: 130 YEQAMELFLEARDDNLKLDKFTYAGALGFCGERCDLDFGKLLHGLVVVNGLSQQVFLINV 189

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           L+  Y+     + A  L +  N R  + WN LIS YVR G   E L +  +M    ++  
Sbjct: 190 LIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLT 249

Query: 175 NFTYPSVLKACGEMMD---VDFGRVVHSCIDA--CHEWSLFVHNALVSMYGKFGQVDVAR 229
            +   SVLKAC   ++   ++ G  +H C  A    E+ + V  AL+ MY K G +  A 
Sbjct: 250 TYALGSVLKACCINLNEGLMEKGMAIH-CYAAKLGMEFDIVVRTALLDMYAKNGSLKEAI 308

Query: 230 RLFDKMLERDAVSWNTMISAY-----ASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284
           +LF  M  ++ V++N MIS +      +     EAF+LF+EMQ  G+E +  T++ +   
Sbjct: 309 KLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVV--- 365

Query: 285 CLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344
                                           L ACS    L+ G++IH    +  +   
Sbjct: 366 --------------------------------LKACSAAKTLEYGRQIHALICKNNFQSD 393

Query: 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404
           E + +ALI +Y+           F  T+++ I +W S++  +   +  E +  LFR++F 
Sbjct: 394 EFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFS 453

Query: 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464
           S + P   T++ ++  CA  A L  G++   Y ++  + + +  +  S + MYA+SG +P
Sbjct: 454 SPIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGI-DAYTSVKTSSISMYAKSGNMP 512

Query: 465 EAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524
            A  VF  +   D  TY+++I+     G    AL +FE M    IKP+    + VL AC 
Sbjct: 513 LANKVFIEVQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIACC 572

Query: 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW 584
           H GLV  G   F+ M + YGI P  +HF C+ DL GR G L+ A+ +I    +     MW
Sbjct: 573 HGGLVTHGVNYFQTMKNSYGINPNEKHFTCLADLLGRTGRLSDAENLILSSGFQDHPVMW 632

Query: 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644
             LL +C++++++ IG+  AE+L+E  PE SG YVL+ N+Y  +G      +VR  MRD 
Sbjct: 633 RALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDR 692

Query: 645 GVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
           GV+K P  +W+  GN    F V D S+  +Q IY +L
Sbjct: 693 GVKKEPALSWIVLGNQTHSFAVADWSHPSSQMIYTML 729



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 223/463 (48%), Gaps = 41/463 (8%)

Query: 138 RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV 197
           R  + +N LIS Y + GFY +A+ ++ + +   ++ D FTY   L  CGE  D+DFG+++
Sbjct: 112 RNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFCGERCDLDFGKLL 171

Query: 198 HSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLW 256
           H  +        +F+ N L+ MY K G++D A  LFD+  ERD VSWN++IS Y   G  
Sbjct: 172 HGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGAA 231

Query: 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316
           +E   L  +M   G+++      ++   C    N +G++E                    
Sbjct: 232 EEPLNLLAKMHRAGLKLTTYALGSVLKACCINLN-EGLME-------------------- 270

Query: 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI 376
            G   H  A KLG E               VR AL+ MY++   L+ A  LF +   K++
Sbjct: 271 KGMAIHCYAAKLGMEFDIV-----------VRTALLDMYAKNGSLKEAIKLFSLMPAKNV 319

Query: 377 ITWNSMLSGYTHLD-----CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
           +T+N+M+SG+  +D      + E+  LF EM R G+EP+  T + +L  C+    L++G+
Sbjct: 320 VTYNAMISGFLQMDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGR 379

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ 491
           + H  I +   F     + ++L+E+YA  G   +    F   S++D  ++TS+I  +   
Sbjct: 380 QIHALICKNN-FQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQN 438

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
            +   A  LF ++  + I+P+  T+  ++SAC+    +  G+ Q +      GI      
Sbjct: 439 EQLESAFDLFRQLFSSPIRPEEYTVSLMMSACADFAALSSGE-QIQGYAIKSGIDAYTSV 497

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
               + +Y ++G +  A ++  ++   P  A ++ ++ +   H
Sbjct: 498 KTSSISMYAKSGNMPLANKVFIEVQ-NPDVATYSAMISSLAQH 539



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 183/400 (45%), Gaps = 51/400 (12%)

Query: 145 LLISLYVRDGF-YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CID 202
           +LI+  V  G+ +  +LC     Q +    D+  Y  + +   +   +  G++ H   + 
Sbjct: 22  ILITKQVGLGYRFLSSLC-----QPKNTALDSEAYKKLFQTAAKSGSLVLGKLAHGHMVK 76

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           +     L++ N L++MY K  ++  AR+LFD+M ER                        
Sbjct: 77  SSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPER------------------------ 112

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
                      N+I++N++  G  + G ++  +EL    R     LD       LG C  
Sbjct: 113 -----------NIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFCGE 161

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
              L  GK +HG  V     +   + N LI MYS+C  L  A  LF    E+  ++WNS+
Sbjct: 162 RCDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSL 221

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN---LQHGKEFHCYILR 439
           +SGY  +  AEE   L  +M R+G++     + S+L  C    N   ++ G   HCY  +
Sbjct: 222 ISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAK 281

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY----GIQGEGR 495
             M    +++  +L++MYA++G + EA  +F LM  ++ VTY ++I+G+     I  E  
Sbjct: 282 LGM-EFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEAS 340

Query: 496 V-ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
             A KLF EM +  ++P   T   VL ACS +  +  G++
Sbjct: 341 SEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQ 380



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 154/315 (48%), Gaps = 5/315 (1%)

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
           L S  + + T LDS A        +  G+L LGK  HG  V+        + N L+ MY 
Sbjct: 35  LSSLCQPKNTALDSEAYKKLFQTAAKSGSLVLGKLAHGHMVKSSLNPCLYLLNNLLNMYC 94

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           +C++L  A  LF    E++II++NS++SGYT +   E++  LF E     ++ +  T A 
Sbjct: 95  KCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAG 154

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
            L  C    +L  GK  H  ++   + ++ + L N L++MY++ GK+ +A S+FD  + R
Sbjct: 155 ALGFCGERCDLDFGKLLHGLVVVNGL-SQQVFLINVLIDMYSKCGKLDQAMSLFDRCNER 213

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS---HSGLVVEGQ 533
           D+V++ SLI+GY   G     L L  +M++  +K     + +VL AC    + GL+ +G 
Sbjct: 214 DQVSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGM 273

Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
                  +  G+   +     ++D+Y + G L +A ++ + MP        A + G  Q+
Sbjct: 274 A-IHCYAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQM 332

Query: 594 HRNTGIGEWAAEKLL 608
              T      A KL 
Sbjct: 333 DDITDEASSEAFKLF 347


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 187/584 (32%), Positives = 296/584 (50%), Gaps = 71/584 (12%)

Query: 130 FLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189
           +L + S+     P N +I+  VR G    AL V+  M+++     N     + K    MM
Sbjct: 51  YLTKPSDEDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMM 110

Query: 190 DVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
           +       H   D   E   F +N ++S Y + G  + A+  F++M  +DA SWNTMI+ 
Sbjct: 111 EA------HQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITG 164

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
           YA +G  ++A  LF  M E+    N ++WN +  G +  G+ +           +  +  
Sbjct: 165 YARRGEMEKARVLFYSMMEK----NEVSWNAMISGYIECGDLE-----------KAAHFF 209

Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
             A   G+ A +                            A+IT Y + K +  A  +FK
Sbjct: 210 KAAPFRGVVAWT----------------------------AMITGYMKAKKVELAEAMFK 241

Query: 370 -MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428
            MT +K+++TWN+M+SGY      E+   LFR M   G+ PN   ++S L  C+ ++ L 
Sbjct: 242 DMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALC 301

Query: 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGY 488
            G++ H  +                  MY + G++ +A  +F+ M ++D V + ++I+GY
Sbjct: 302 LGRQIHQIV------------------MYCKCGELGDAWKLFEAMKKKDVVAWNAMISGY 343

Query: 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
              G    AL LF EM  ++ KPD +T VAVL AC+H+GLV  G   F+ M   Y + P+
Sbjct: 344 AQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPR 403

Query: 549 LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
            +H+ CMVDL GRAG + +A ++I  MP+ P +A++ TLLGAC++H+N  + E+AAEKLL
Sbjct: 404 PDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLL 463

Query: 609 ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
           E  P N+  YV +AN+YA+   W+ +A+VR  M++  V K+PG +W++  N    F   D
Sbjct: 464 ELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWIEIRNKIHHFRSSD 523

Query: 669 TSNVQAQEIYPLLGGLTELMKDAGYVVKEEFC---SEEEIVEEI 709
             + +   I+  L  L   MK AGY  + EF     EEE  E++
Sbjct: 524 RIHPELDSIHKKLKELERKMKLAGYKPELEFALHNVEEEQKEKL 567



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 54/225 (24%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C ++ AL  G+Q+H                  +  Y       +A  L E    +  + W
Sbjct: 294 CSELSALCLGRQIHQ-----------------IVMYCKCGELGDAWKLFEAMKKKDVVAW 336

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-- 201
           N +IS Y + G   +ALC++ +M+  + + D  T+ +VL AC     VD G      +  
Sbjct: 337 NAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVR 396

Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLF----------------------------- 232
           D   E     +  +V + G+ G+V+ A +L                              
Sbjct: 397 DYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAE 456

Query: 233 ---DKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
              +K+LE   R+A  +  + + YASK LW++  ++   M+E  V
Sbjct: 457 FAAEKLLELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNV 501


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/573 (30%), Positives = 295/573 (51%), Gaps = 38/573 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           C +    + G+ LH  AI +G   +  ++  LV  YA       A  + E    R  + W
Sbjct: 176 CIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSW 234

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCID 202
             +IS  V++GF ++ L ++ +M+   +    +T  +V+ AC  +  +  GR +H S I 
Sbjct: 235 TSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIK 294

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
                + F+  AL+ MY K G++D AR +FD++             +Y            
Sbjct: 295 QGLMSNSFISAALLDMYVKCGELDHARCVFDEL-------------SY------------ 329

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
                     ++++ W T+  G  + GN    L L    R      +SV T   L A + 
Sbjct: 330 ----------IDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQ 379

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
           +  L LGK IHG AV+    EY  V NAL+ MY++C+ +  A  +F   + K ++ WNSM
Sbjct: 380 LRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSM 439

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           +SGY   +  +++  LF++M   G  P+ +++ + L     + +L  GK  H Y ++ A 
Sbjct: 440 ISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHA- 498

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F  ++ +  +L+ +Y + G +  A+ VFD M+ R+ VT+ ++I GYG+QG+   ++ LF 
Sbjct: 499 FVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFG 558

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
           EM K+ + P+ +   ++LS CSHSG+V  G++ F+ M   + I P ++H+ACMVD+  RA
Sbjct: 559 EMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARA 618

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622
           G L  A E I  MP    +++W   L  C++H      E A ++++   PE    YVLI+
Sbjct: 619 GNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLIS 678

Query: 623 NMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N+Y + G WDK   +R  M++ G+ K+PGC+ V
Sbjct: 679 NLYTSNGMWDKSLAIRRWMQEKGLVKLPGCSSV 711



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/482 (25%), Positives = 222/482 (46%), Gaps = 45/482 (9%)

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI-- 171
           KL++ YA+     +A  + + +       +  ++   V+   +A+A+ ++  M+ RR   
Sbjct: 102 KLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCP 161

Query: 172 -RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARR 230
              D+F     LKAC    +  +GR +H           FV N+LV MY K   ++ AR+
Sbjct: 162 EAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVGGADGFVMNSLVDMYAKAEDLECARK 221

Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
           +F+++ +R                                   NV++W ++  GC++ G 
Sbjct: 222 VFERIPDR-----------------------------------NVVSWTSMISGCVQNGF 246

Query: 291 FKGVLELLSRMRTQETYLD--SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348
               L L ++MR         ++ATVI   ACS +  L  G+ +HGS ++        + 
Sbjct: 247 ASDGLLLFNKMRQDNVPPSEYTIATVIT--ACSALFGLHQGRWMHGSVIKQGLMSNSFIS 304

Query: 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE 408
            AL+ MY +C +L HA  +F   +   ++ W +M+ GYT      ++  LF +   + + 
Sbjct: 305 AALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIA 364

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
           PN VT A++L   A++ +L  GK  H   ++  +  E+ ++ N+LV+MYA+   V EA  
Sbjct: 365 PNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLV-EYNVVGNALVDMYAKCQAVSEADR 423

Query: 469 VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528
           +F  +S +D V + S+I+GY     G  AL LF++M+     PD +++V  LSA    G 
Sbjct: 424 IFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGD 483

Query: 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           ++ G K        +     +     +++LY + G L  A+ +  +M     S  W  ++
Sbjct: 484 LLIG-KSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMN-DRNSVTWCAMI 541

Query: 589 GA 590
           G 
Sbjct: 542 GG 543



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 3/244 (1%)

Query: 47  FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
           +   GN   A   F   R    + + V  + A ++    +++ L+ GK +H  A+ LGL 
Sbjct: 342 YTQNGNPLDALRLFLDKRFANIAPNSV--TTATVLSASAQLRDLSLGKSIHGLAVKLGLV 399

Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
           +  V+   LV  YA     + A  +    + +  + WN +IS Y  +    +AL ++KQM
Sbjct: 400 EYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQM 459

Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
             +    D  +  + L A   + D+  G+ +H   +      +++V  AL+++Y K G +
Sbjct: 460 SLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDL 519

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
             ARR+FD+M +R++V+W  MI  Y  +G    +  LF EM ++GV  N I + +I   C
Sbjct: 520 LSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTC 579

Query: 286 LRTG 289
             +G
Sbjct: 580 SHSG 583


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 194/640 (30%), Positives = 329/640 (51%), Gaps = 46/640 (7%)

Query: 77  FAHIIFCCGKVKALAQGKQLHACAIALGLEK-NPVLVPKLVTFYASFSLYNNACFLVENS 135
            A ++  CG+   L +G+ LHA  +  G    +  L   L+T Y+  +   +A  L    
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + W  L+S   ++  +A+AL  +  M+   +    F   S  +A   +     G 
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGA 142

Query: 196 VVHSC-IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            +H   +    +  LFV + L  MY K G +  A R+FD+M ++DAV+W  MI  YA  G
Sbjct: 143 QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 202

Query: 255 LWKEAFQLFVEMQEEGV---EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
             + A   F +M+ EG+   + +V      A G L+ G                      
Sbjct: 203 SLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDG---------------------- 240

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
                           L K IH    +  +     VRNALI MY++  D+  A  + K+ 
Sbjct: 241 ---------------WLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKID 285

Query: 372 AEK-SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430
               ++++  SM+ GY   DC EE+  ++ E+ R GVEPN  T +S++  CA  A L+ G
Sbjct: 286 PGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQG 345

Query: 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490
            + H  +++  +  +  +  ++LV+MY + G +  +  +F+ +  R ++ + ++I  +  
Sbjct: 346 AQLHAQVIKTDLIRDSFV-GSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQ 404

Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
            G GR A++ F+ M  + I+P+H+  V++L+ACSH+GLV EG K F  M   +GI P+ E
Sbjct: 405 HGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEE 464

Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610
           H++C++D YGRAG L++A + I++MP  P +  W +LLGAC++  +  +GE AA+ L++ 
Sbjct: 465 HYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKL 524

Query: 611 RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTS 670
            P N+G +V ++ +YA+ G W+ +  VR  MRD  ++K+PG +WVD+      F  +D S
Sbjct: 525 EPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWS 584

Query: 671 NVQAQEIYPLLGGLTELMKDAGYVVKEEF--CSEEEIVEE 708
           + Q ++IY  L  LT  +K+ GY+    F  C+ E+I +E
Sbjct: 585 HPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKE 624



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 17/255 (6%)

Query: 44  LKDFAGRGNLSKAFEAFTRIR---ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACA 100
           +  +A  G+L  A  +F  ++   +  A   V    F  ++   G +K     K +H C 
Sbjct: 195 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHV----FCSVLSASGGLKDGWLSKSIHCCV 250

Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF----- 155
              G E    +   L+  YA      +A  +++      P  WN++    + DG+     
Sbjct: 251 TKAGFELEVAVRNALIDMYAKSMDVESASRVLKID----PGGWNVVSGTSMIDGYIETDC 306

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNA 214
             EAL +Y +++ + +  + FT+ S++K C     ++ G  +H+  I        FV + 
Sbjct: 307 VEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST 366

Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
           LV MYGK G + ++ +LF+++  R  ++WN +I+ +A  G  +EA Q F  M   G+  N
Sbjct: 367 LVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPN 426

Query: 275 VITWNTIAGGCLRTG 289
            I + ++   C   G
Sbjct: 427 HIAFVSLLTACSHAG 441



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F+ +I  C     L QG QLHA  I   L ++  +   LV  Y    L + +  L    
Sbjct: 328 TFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 387

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  + WN +I+++ + G   EA+  + +M    IR ++  + S+L AC     VD G 
Sbjct: 388 EYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGL 447

Query: 196 VVHSCIDACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA--- 249
                +   H  E     ++ ++  YG+ G++D A +   +M ++ +A  W +++ A   
Sbjct: 448 KYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRM 507

Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNV 275
             SK L + A Q  ++++     ++V
Sbjct: 508 RGSKELGEVAAQNLMKLEPGNTGIHV 533



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 1/178 (0%)

Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471
           V +AS+L  C R  +L+ G+  H  ++          L N L+ MY+    +  A  +F 
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 80

Query: 472 LMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE 531
            M RR+ V++T+L++G         AL  F  M +  + P    + +   A + +     
Sbjct: 81  AMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARA-AAALGAPL 139

Query: 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
              Q   +    G   +L   + + D+Y + GLL++A  +  +MP     A  A + G
Sbjct: 140 PGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDG 197


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/544 (31%), Positives = 284/544 (52%), Gaps = 38/544 (6%)

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215
           Y  AL ++ +M S  +  DNFT+P    +C  +  +      HS                
Sbjct: 103 YPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSL--------------- 147

Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
                          LF   L  D  + +++I+AYA  GL   A ++F E+       + 
Sbjct: 148 ---------------LFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHR----DS 188

Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATVIGLGACSHVGALKLGKEIHG 334
           ++WN++  G  + G  +  +E+   M  ++ +  D ++ V  LGAC  +G L+LG+ + G
Sbjct: 189 VSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEG 248

Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
             V         + +ALI+MY++C +L  A  +F   A + +ITWN+++SGY     A+E
Sbjct: 249 FVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADE 308

Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
           +  LF  M    V  N +T+ ++L  CA +  L  GK+   Y  +R  F   + +  +L+
Sbjct: 309 AILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRG-FQHDIFVATALI 367

Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK--NQIKPD 512
           +MYA+SG +  A+ VF  M +++E ++ ++I+     G+ + AL LF+ M+      +P+
Sbjct: 368 DMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPN 427

Query: 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEII 572
            +T V +LSAC H+GLV EG + F+ M++++G+ P++EH++CMVDL  RAG L +A ++I
Sbjct: 428 DITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLI 487

Query: 573 TKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632
            KMP  P       LLGAC+  +N  IGE     +LE  P NSG Y++ + +YA    W+
Sbjct: 488 RKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWE 547

Query: 633 KLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAG 692
             A++R  MR  G+ K PGC+W++  N    F   D   + + ++  ++  L E +K  G
Sbjct: 548 DSARMRLLMRQKGITKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIIDLLYEELKREG 607

Query: 693 YVVK 696
           YV K
Sbjct: 608 YVPK 611



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 196/422 (46%), Gaps = 50/422 (11%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F      C  + +L+     H+    L L  +P     L+T YA   L  +A  + +  
Sbjct: 124 TFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEI 183

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFG 194
             R  + WN +I+ Y + G   EA+ V+++M  R     D  +  S+L ACGE+ D++ G
Sbjct: 184 PHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELG 243

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           R V    ++     + ++ +AL+SMY K G+++ ARR+FD M  RD ++WN +IS YA  
Sbjct: 244 RWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQN 303

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G+  EA  LF  M+E+ V  N IT   +                                
Sbjct: 304 GMADEAILLFHGMKEDCVTANKITLTAV-------------------------------- 331

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
              L AC+ +GAL LGK+I   A +  +     V  ALI MY++   L +A  +FK   +
Sbjct: 332 ---LSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQ 388

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFR--SGVEPNYVTIASILPLCARVANLQHGK 431
           K+  +WN+M+S       A+E+  LF+ M     G  PN +T   +L  C     +  G 
Sbjct: 389 KNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEG- 447

Query: 432 EFHCYILRRAMFN-----EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLI 485
            +  + +   +F      EH   ++ +V++ AR+G + EA  +   M  + D+VT  +L+
Sbjct: 448 -YRLFDMMSTLFGLVPKIEH---YSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALL 503

Query: 486 AG 487
             
Sbjct: 504 GA 505



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 157/307 (51%), Gaps = 6/307 (1%)

Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349
           N+   L L  RM +     D+        +C+++ +L      H    +       +  +
Sbjct: 102 NYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAH 161

Query: 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREM-FRSGVE 408
           +LIT Y+RC  +  A  +F     +  ++WNSM++GY    CA E+  +FREM  R G E
Sbjct: 162 SLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFE 221

Query: 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAK 467
           P+ +++ S+L  C  + +L+ G+    +++ R M  N +  + ++L+ MYA+ G++  A+
Sbjct: 222 PDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSY--IGSALISMYAKCGELESAR 279

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            +FD M+ RD +T+ ++I+GY   G    A+ LF  M ++ +  + +T+ AVLSAC+  G
Sbjct: 280 RIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIG 339

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            +  G KQ +   S  G    +     ++D+Y ++G L+ A+ +   MP     A W  +
Sbjct: 340 ALDLG-KQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMP-QKNEASWNAM 397

Query: 588 LGACQIH 594
           + A   H
Sbjct: 398 ISALAAH 404


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 189/630 (30%), Positives = 321/630 (50%), Gaps = 43/630 (6%)

Query: 84  CGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPW 143
           CG V  L  GK +H  A+  GLE N  L   L++ Y+      +A  +      R  + W
Sbjct: 271 CGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISW 330

Query: 144 NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF---GRVVHSC 200
           N +++ YV+DG    AL V+ +M   +   +  T+ S L AC   +D +F   G+++H  
Sbjct: 331 NSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAAC---LDPEFFTNGKILHGF 387

Query: 201 IDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
           +     +  L + N L++ YGK  ++  A+++F +M + D V+WN +I  +A+     EA
Sbjct: 388 VVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEA 447

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
              F  M                    R G+  GV              D +  V  LG+
Sbjct: 448 VAAFKLM--------------------REGSTSGV--------------DYITIVNILGS 473

Query: 320 C-SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIIT 378
           C +H   +K G  IH   V   +   ++V+++LITMY++C DL  +  +F     K+   
Sbjct: 474 CLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSV 533

Query: 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438
           WN++++        EE+  L   M  +G+E +    ++ L + A +A L+ G++ H   +
Sbjct: 534 WNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTI 593

Query: 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498
           +     +H ++ N+ ++MY + G++ +A  +    + R  +++ +LI+     G+   A 
Sbjct: 594 KLGFELDHFII-NAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAK 652

Query: 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558
           + F +M K  +KP+HV+ V +LSACSH GLV EG   +  MTS+YGI P +EH  CM+DL
Sbjct: 653 ETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDL 712

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618
            GR+G L +A+  IT+MP  P   +W +LL +C+I+RN  +G  AA+ LLE  P +   Y
Sbjct: 713 LGRSGRLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAY 772

Query: 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIY 678
           VL +N++A  G W+ +  VR  M    ++K P  +WV      S F + D ++ Q ++I 
Sbjct: 773 VLYSNVFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQIN 832

Query: 679 PLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
             L GL +++ +AGYV    +  ++   E+
Sbjct: 833 GKLLGLMKIVGEAGYVPDTSYSLQDTDEEQ 862



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 148/540 (27%), Positives = 254/540 (47%), Gaps = 49/540 (9%)

Query: 78  AHIIFCCGKVKALA-QGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSN 136
           A ++  C K   +A +G Q H  AI  GL  +  +    V FYAS+ + +NA  +     
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG-R 195
            R  + W  L+  Y  +G   E +  YK+M+   I  +      V+ +CG +MD+  G +
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGL 255
           ++   +    E  +   N+L+ M+G  G ++ A  +F++M ERD +SWN++ISA A   L
Sbjct: 182 LLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTL 241

Query: 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVI 315
            +E+F+ F  M+    E+N  T + +                                  
Sbjct: 242 HEESFRYFHWMRLVHEEINYTTLSIL---------------------------------- 267

Query: 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYENV--RNALITMYSRCKDLRHAYILFKMTAE 373
            L  C  V  LK GK +HG AV+  YG   N+   N L+++YS     + A ++F+   E
Sbjct: 268 -LSICGSVDYLKWGKGVHGLAVK--YGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPE 324

Query: 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433
           + +I+WNSML+ Y        +  +F EM     E NYVT  S L  C       +GK  
Sbjct: 325 RDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKIL 384

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
           H +++   + +E L++ N+L+  Y +  K+ EAK VF  M + D+VT+ +LI G+    E
Sbjct: 385 HGFVVVLGLQDE-LIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAE 443

Query: 494 GRVALKLFEEMNKNQIKP-DHVTMVAVLSAC-SHSGLVVEGQKQFERMTSIYGIFPQLEH 551
              A+  F+ M +      D++T+V +L +C +H  L+  G       T + G       
Sbjct: 444 LNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIP-IHAHTVVTGFDLDQHV 502

Query: 552 FACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611
            + ++ +Y + G L+ +  I  ++ +  TS++W  ++ A   +   G GE A + ++  R
Sbjct: 503 QSSLITMYAKCGDLHSSSYIFDQLVF-KTSSVWNAIIAA---NARYGFGEEALKLVVRMR 558



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 228/527 (43%), Gaps = 49/527 (9%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           ++ A +I  CG +  +  G QL   A+  GLE        L+  +      N AC +   
Sbjct: 161 NNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNE 220

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194
            N R  + WN +IS   ++  + E+   +  M+      +  T   +L  CG +  + +G
Sbjct: 221 MNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWG 280

Query: 195 RVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
           + VH   +    E ++ + N L+S+Y   G+   A  +F +M ERD +SWN+M++ Y   
Sbjct: 281 KGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQD 340

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
           G    A ++F EM     E+N +T+ +    CL    F                      
Sbjct: 341 GRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTN-------------------- 380

Query: 314 VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373
                          GK +HG  V     +   + N LIT Y +C  +  A  +F+   +
Sbjct: 381 ---------------GKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPK 425

Query: 374 KSIITWNSMLSGYTH---LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL-QH 429
              +TWN+++ G+ +   L+ A  +  L RE   SGV+  Y+TI +IL  C    +L ++
Sbjct: 426 LDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVD--YITIVNILGSCLTHEDLIKY 483

Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
           G   H + +    F+    + +SL+ MYA+ G +  +  +FD +  +    + ++IA   
Sbjct: 484 GIPIHAHTVVTG-FDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANA 542

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G G  ALKL   M    I+ D       LS  +   ++ EGQ Q    T   G   +L
Sbjct: 543 RYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQ-QLHGSTIKLGF--EL 599

Query: 550 EHFA--CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
           +HF     +D+YG+ G L+ A  I+ + P   +   W TL+     H
Sbjct: 600 DHFIINAAMDMYGKCGELDDALRILPQ-PTDRSRLSWNTLISISARH 645



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/519 (24%), Positives = 228/519 (43%), Gaps = 39/519 (7%)

Query: 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTY 178
           Y+ F   N A  + +  + R    WN ++S YVR G Y EA+  ++ +    I+      
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIK------ 55

Query: 179 PSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER 238
           PS             G ++ S + AC++ S+           +F    +   L       
Sbjct: 56  PS-------------GFMIASLVTACNKSSIMAKEGF-----QFHGFAIKCGLI-----Y 92

Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298
           D     + +  YAS G+   A ++F EM +     NV++W ++       G+ K V+   
Sbjct: 93  DVFVGTSFVHFYASYGIVSNAQKMFNEMPDR----NVVSWTSLMVSYSDNGSKKEVINTY 148

Query: 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358
            RMR +    +     + + +C  +  + LG ++ G A++       +  N+LI M+  C
Sbjct: 149 KRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAANSLIFMFGGC 208

Query: 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418
            D+  A  +F    E+  I+WNS++S        EES   F  M     E NY T++ +L
Sbjct: 209 GDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILL 268

Query: 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE 478
            +C  V  L+ GK  H   ++  +   ++ L N+L+ +Y+ +G+  +A+ +F  M  RD 
Sbjct: 269 SICGSVDYLKWGKGVHGLAVKYGL-ESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDL 327

Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538
           +++ S++A Y   G    ALK+F EM   + + ++VT  + L+AC        G K    
Sbjct: 328 ISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNG-KILHG 386

Query: 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598
              + G+  +L     ++  YG+   + +AK++  +MP       W  L+G      N  
Sbjct: 387 FVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMP-KLDKVTWNALIGG--FANNAE 443

Query: 599 IGEW-AAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
           + E  AA KL+     +   Y+ I N+  +    + L K
Sbjct: 444 LNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIK 482



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/437 (21%), Positives = 190/437 (43%), Gaps = 42/437 (9%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C   +    GK LH   + LGL+   ++   L+TFY        A  + +  
Sbjct: 364 TFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRM 423

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG-DNFTYPSVLKACGEMMD-VDF 193
                + WN LI  +  +    EA+  +K M+     G D  T  ++L +C    D + +
Sbjct: 424 PKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKY 483

Query: 194 GRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS 252
           G  +H+  +    +    V ++L++MY K G +  +  +FD+++ + +  WN +I+A A 
Sbjct: 484 GIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANAR 543

Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA 312
            G  +EA +L V M+  G+E +   ++T                                
Sbjct: 544 YGFGEEALKLVVRMRSAGIEFDQFNFST-------------------------------- 571

Query: 313 TVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372
               L   + +  L+ G+++HGS ++  +     + NA + MY +C +L  A  +     
Sbjct: 572 ---ALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQPT 628

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
           ++S ++WN+++S         ++   F +M + GV+PN+V+   +L  C+    +  G  
Sbjct: 629 DRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLA 688

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAG---Y 488
           ++  +         +     ++++  RSG++ EA++    M    +++ + SL+A    Y
Sbjct: 689 YYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLASCRIY 748

Query: 489 GIQGEGRVALKLFEEMN 505
                GR A K   E++
Sbjct: 749 RNLDLGRKAAKHLLELD 765



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 165/378 (43%), Gaps = 40/378 (10%)

Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
           MY KFG+++ A+ +FD+M ER+  SWN M+S Y   G + EA   F ++   G++ +   
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
             ++   C +           S +  +E                       G + HG A+
Sbjct: 61  IASLVTACNK-----------SSIMAKE-----------------------GFQFHGFAI 86

Query: 338 RGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396
           + C   Y+  V  + +  Y+    + +A  +F    ++++++W S++  Y+     +E  
Sbjct: 87  K-CGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVI 145

Query: 397 FLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
             ++ M   G+  N   IA ++  C  + ++  G +   + L+  +    +   NSL+ M
Sbjct: 146 NTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGL-ETKVSAANSLIFM 204

Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
           +   G + EA S+F+ M+ RD +++ S+I+          + + F  M     + ++ T+
Sbjct: 205 FGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTL 264

Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
             +LS C     +  G K    +   YG+   +     ++ +Y  AG    A+ I  +MP
Sbjct: 265 SILLSICGSVDYLKWG-KGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMP 323

Query: 577 YTPTSAMWATLLGACQIH 594
                + W ++L AC + 
Sbjct: 324 ERDLIS-WNSML-ACYVQ 339



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/226 (19%), Positives = 101/226 (44%), Gaps = 6/226 (2%)

Query: 63  IRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF 122
           +R+ +A  +    +F+  +     +  L +G+QLH   I LG E +  ++   +  Y   
Sbjct: 555 VRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKC 614

Query: 123 SLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVL 182
              ++A  ++     R  L WN LIS+  R G + +A   +  M    ++ ++ ++  +L
Sbjct: 615 GELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLL 674

Query: 183 KACGEMMDVDFGRVVHSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLFDKM-LERD 239
            AC     VD G   ++ + + +     + +   ++ + G+ G++  A     +M +  +
Sbjct: 675 SACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPN 734

Query: 240 AVSWNTMISA---YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
            + W +++++   Y +  L ++A +  +E+        V+  N  A
Sbjct: 735 DLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFA 780


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 171/518 (33%), Positives = 284/518 (54%), Gaps = 38/518 (7%)

Query: 178 YPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236
           Y + + AC E   +  GR VH+  I A +  ++F+   LV+MY + G +D AR + D+M 
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104

Query: 237 ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296
           ER  VSW TMIS Y+      EA  LF++M   G   N  T  T+               
Sbjct: 105 ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATV--------------- 149

Query: 297 LLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS 356
                               L +CS   ++  GK++H   V+  +  +  V ++L+ MY+
Sbjct: 150 --------------------LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA 189

Query: 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416
           + ++++ A  +F    E+ +++  +++SGY      EE+  LFR+++  G++ N+VT  +
Sbjct: 190 KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTT 249

Query: 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR 476
           ++   + +A+L +GK+ H  ILR+ +    + L NSL++MY++ GK+  ++ VFD M  R
Sbjct: 250 LVTALSGLASLDYGKQVHALILRKEL-PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER 308

Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536
             V++ +++ GYG  G G   + LF++++K ++KPD VT++AVLS CSH GLV EG   F
Sbjct: 309 SVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLDIF 367

Query: 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596
           + +           H+ C++DL GR+G L KA  +I  MP+  T ++W +LLGAC++H N
Sbjct: 368 DTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHAN 427

Query: 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVD 656
             +GE  A+KLLE  PEN+G YV+++N+YAA G W  + KVR  M +  V K PG +W+ 
Sbjct: 428 VHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWII 487

Query: 657 AGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
              V   F   +  +   ++I   +  +   +K AG+V
Sbjct: 488 LDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFV 525



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 191/394 (48%), Gaps = 37/394 (9%)

Query: 81  IFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP 140
           I  C + +AL +G+Q+HA  I         L  +LVT Y      ++A  +++    R  
Sbjct: 49  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108

Query: 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
           + W  +IS Y +   + EAL ++ +M       + +T  +VL +C     +  G+ VHS 
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 168

Query: 201 -IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
            +    E  +FV ++L+ MY K   +  ARR+FD + ERD VS   +IS YA KGL +EA
Sbjct: 169 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 228

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
             LF ++  EG++ N +T+ T+                                   + A
Sbjct: 229 LDLFRQLYSEGMQCNHVTFTTL-----------------------------------VTA 253

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379
            S + +L  GK++H   +R     +  ++N+LI MYS+C  L ++  +F    E+S+++W
Sbjct: 254 LSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSW 313

Query: 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439
           N+ML GY       E   LF+++ +  V+P+ VT+ ++L  C+    +  G +    +++
Sbjct: 314 NAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVK 372

Query: 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
                 H   +  ++++  RSG++ +A ++ + M
Sbjct: 373 EQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM 406



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 42/291 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           + A ++  C   +++ QGKQ+H+  +    E +  +   L+  YA       A  + +  
Sbjct: 145 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 204

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             R  +    +IS Y + G   EAL +++Q+ S  ++ ++ T+ +++ A   +  +D+G+
Sbjct: 205 PERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGK 264

Query: 196 VVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK 253
            VH+ I    E   FV   N+L+ MY K G++  +RR+FD MLER  VSWN M+  Y   
Sbjct: 265 QVHALI-LRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRH 323

Query: 254 GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC-----------------------LRTGN 290
           GL  E   LF ++ +E V+ + +T   +  GC                       L TG+
Sbjct: 324 GLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGH 382

Query: 291 FKGVLELLSRMRTQETYL--------DSVATVIG--LGACS-----HVGAL 326
           +  +++LL R    E  L        +S  ++ G  LGAC      HVG L
Sbjct: 383 YGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGEL 433


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 211/676 (31%), Positives = 318/676 (47%), Gaps = 97/676 (14%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +  H++  C  +K L   K +HA  I  GL    V + KL++          A  L +  
Sbjct: 41  TLHHLLDQCSSMKRL---KLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQI 97

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG--------- 186
                  +N LI  Y       ++L +++QM S     + FT+P VLKAC          
Sbjct: 98  PQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAV 157

Query: 187 --EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWN 244
                 +  G   H+C          V NA+++ Y     +  AR++FD + +R  VSWN
Sbjct: 158 IVHAQAIKLGMGPHAC----------VQNAILTAYVACRLILSARQVFDDISDRTIVSWN 207

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           +MI+ Y+  G   EA  LF EM + GVE +V T                ++ LLS   ++
Sbjct: 208 SMIAGYSKMGFCDEAILLFQEMLQLGVEADVFT----------------LVSLLSA-SSK 250

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
              LD       LG   H+  +  G EI              V NALI MY++C  L+ A
Sbjct: 251 HCNLD-------LGRFVHLYIVITGVEIDSI-----------VTNALIDMYAKCGHLQFA 292

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAE------------------------------- 393
             +F    +K +++W SM++ Y +    E                               
Sbjct: 293 KHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYT 352

Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
           E+  LF  M  SGV P+  T+ SIL  C+   +L  GK+ HCYI    +    + L NSL
Sbjct: 353 EAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDN-IITVSVTLCNSL 411

Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
           ++MYA+ G +  A  +F  M  ++ V++  +I    + G G  A+++F+ M  + + PD 
Sbjct: 412 IDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDE 471

Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
           +T   +LSACSHSGLV  G+  F+ M S + I P +EH+ACMVDL GR G L +A  +I 
Sbjct: 472 ITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQ 531

Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
           KMP  P   +W  LLGAC+I+ N  I +   ++LLE    NSG YVL++NMY+ +  WD 
Sbjct: 532 KMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDD 591

Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
           + K+R  M D G++K    ++++       F+VDD  +  +  IY +L  L + +K  GY
Sbjct: 592 MKKIRKIMDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSILDQLMDHLKSVGY 651

Query: 694 VVKEEFCSEEEIVEEI 709
                 C   E VEEI
Sbjct: 652 P-----CKSSE-VEEI 661


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 206/667 (30%), Positives = 326/667 (48%), Gaps = 39/667 (5%)

Query: 28  QPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKV 87
           + I N+ ++  N +       G    S   E F R+R    + +    +FA +      +
Sbjct: 64  ERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNA--HTFAGVFTAASTL 121

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
              A G+  HA AI +   ++  +   L+  Y    L   A  + +    R  + W  +I
Sbjct: 122 VDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMI 181

Query: 148 SLYVRDGFYAEALCVYKQMQSRRIRGDN-FTYPSVLKACGEMMDVDFGRVVHSCIDACHE 206
           S Y      AEAL +++ M+ R   G+N F + SVL A      V+ G+ +H CI     
Sbjct: 182 SGYASQKLAAEALGLFRLMR-REEEGENEFVFTSVLSALTLPELVNNGKQIH-CIA---- 235

Query: 207 WSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266
               V N L+S+      V V                N +++ YA  G   +A Q F   
Sbjct: 236 ----VKNGLLSI------VSVG---------------NALVTMYAKCGSLDDALQTF--- 267

Query: 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326
            E   + N ITW+ +  G  ++G+    L+L S M            V  + ACS +GA 
Sbjct: 268 -ETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAA 326

Query: 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGY 386
             GK++H   ++  +     V  AL+ MY++C  +  A   F    E  I+ W SM+ GY
Sbjct: 327 WEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGY 386

Query: 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446
                 E++  L+  M   G+ PN +T+AS+L  C+ +A L+ GK+ H   ++   F   
Sbjct: 387 VQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG-FGLE 445

Query: 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506
           + + ++L  MYA+ G + +   VF  M  RD +++ ++I+G    G G+ AL+LFEEM  
Sbjct: 446 VPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQL 505

Query: 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566
              KPD+VT V +LSACSH GLV  G   F  M   +G+ P++EH+ACMVD+  RAG L 
Sbjct: 506 EGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLK 565

Query: 567 KAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626
           +A E            +W  +LGAC+ +RN  +G +A EKL+E   + S  YVL++++Y+
Sbjct: 566 EAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYS 625

Query: 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTE 686
           A G W+ + +VR  M+  GV K PGC+W++  +    F+V D  + Q  +I+  L  L++
Sbjct: 626 ALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSK 685

Query: 687 LMKDAGY 693
            MKD GY
Sbjct: 686 QMKDEGY 692



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 156/550 (28%), Positives = 260/550 (47%), Gaps = 58/550 (10%)

Query: 88  KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLI 147
           ++L +GK LHA  I         +   LV  YA       A F+ E    +  + WN +I
Sbjct: 20  RSLQKGKALHA-QIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCII 78

Query: 148 SLYVRDGFYAEA--LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC---ID 202
           + Y + G    +  + ++++M++     +  T+  V  A   ++D   GR+ H+    +D
Sbjct: 79  NGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMD 138

Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
           +C +  +FV ++L++MY K G    AR++FD M ER++VSW TMIS YAS+ L  EA  L
Sbjct: 139 SCRD--VFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGL 196

Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
           F  M+ E    N   + ++                                   L A + 
Sbjct: 197 FRLMRREEEGENEFVFTSV-----------------------------------LSALTL 221

Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
              +  GK+IH  AV+       +V NAL+TMY++C  L  A   F+ +++K+ ITW++M
Sbjct: 222 PELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAM 281

Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
           ++GY     ++++  LF  M  SG+ P+  T   ++  C+ +     GK+ H Y+L+   
Sbjct: 282 ITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLG- 340

Query: 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502
           F   + +  +LV+MYA+   + +A+  FD +   D V +TS+I GY   GE   AL L+ 
Sbjct: 341 FESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYG 400

Query: 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562
            M    I P+ +TM +VL ACS    + +G KQ    T  YG   ++   + +  +Y + 
Sbjct: 401 RMEMEGILPNELTMASVLKACSSLAALEQG-KQIHARTVKYGFGLEVPIGSALSTMYAKC 459

Query: 563 GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE-----KLLETRPENSGY 617
           G L     +  +MP     +  A + G  Q     G G+ A E     +L  T+P+    
Sbjct: 460 GCLKDGTLVFRRMPARDVISWNAMISGLSQ----NGCGKEALELFEEMQLEGTKPD---- 511

Query: 618 YVLIANMYAA 627
           YV   N+ +A
Sbjct: 512 YVTFVNILSA 521


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 332/634 (52%), Gaps = 63/634 (9%)

Query: 63  IRITAASHDVVLDSFAH---IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
           +R+ +A   VV D+F +   + FC G  +    G QL +  +  GLE + V+    +T Y
Sbjct: 163 VRMKSAG--VVFDAFTYSTALSFCVGS-EGFLLGLQLQSTVVKTGLESDLVVGNSFITMY 219

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA-EALCVYKQMQSRRIRGDNFTY 178
           +    +  A  + +  + +  + WN L+S   ++G +  EA+ +++ M    +  D+ ++
Sbjct: 220 SRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSF 279

Query: 179 PSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
            SV+  C    D+   R +H  CI   +E  L V N L+S Y K G ++  + +F +M E
Sbjct: 280 TSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSE 339

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           R+ VSW TMIS+        +A  +F+ M+ +GV  N +T+                + L
Sbjct: 340 RNVVSWTTMISSNKD-----DAVSIFLNMRFDGVYPNEVTF----------------VGL 378

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
           ++ ++  E                    +K G +IHG  ++  +    +V N+ IT+Y++
Sbjct: 379 INAVKCNEQ-------------------IKEGLKIHGLCIKTGFVSEPSVGNSFITLYAK 419

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE---PNYVTI 414
            + L  A   F+    + II+WN+M+SG+     + E+     +MF S      PN  T 
Sbjct: 420 FEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEAL----KMFLSAAAETMPNEYTF 475

Query: 415 ASILPLCARVANL--QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
            S+L   A   ++  + G+  H ++L+  + N   ++ ++L++MYA+ G + E++ VF+ 
Sbjct: 476 GSVLNAIAFAEDISVKQGQRCHAHLLKLGL-NSCPVVSSALLDMYAKRGNIDESEKVFNE 534

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           MS++++  +TS+I+ Y   G+    + LF +M K  + PD VT ++VL+AC+  G+V +G
Sbjct: 535 MSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKG 594

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            + F  M  +Y + P  EH++CMVD+ GRAG L +A+E+++++P  P  +M  ++LG+C+
Sbjct: 595 YEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCR 654

Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
           +H N  +G   AE  +E +PE SG YV + N+YA    WDK A++R  MR   V K  G 
Sbjct: 655 LHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGF 714

Query: 653 AWVDAGN-----VFSPFLVDDTSNVQAQEIYPLL 681
           +W+D G+         F   D S+ ++ EIY ++
Sbjct: 715 SWIDVGDTEGSLTMQGFSSGDKSHPKSDEIYRMV 748



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 194/429 (45%), Gaps = 54/429 (12%)

Query: 113 PKLVTFYASFSLYNNACFLVENSNIRYPL-PWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
            K   F   +S Y  A  L + S+ R      N  IS  +R    A AL ++K+      
Sbjct: 12  SKSFLFQRFYSPYRIAHKLFDGSSQRNATTSINHSISESLRRNSPARALSIFKENLQLGY 71

Query: 172 RG---DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV--HNALVSMYGKFGQVD 226
            G   D  T    LKAC    D+  G  +H        ++ FV   NA++ MY K G+ D
Sbjct: 72  FGRHMDEVTLCLALKAC--RGDLKRGCQIHG-FSTTSGFTSFVCVSNAVMGMYRKAGRFD 128

Query: 227 VARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286
            A  +F+ +++ D VSWNT++S +    +   A    V M+  GV  +  T++T    C+
Sbjct: 129 NALCIFENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCV 185

Query: 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN 346
            +  F   L+L S             TV+  G  S +                       
Sbjct: 186 GSEGFLLGLQLQS-------------TVVKTGLESDL----------------------V 210

Query: 347 VRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC-AEESAFLFREMFRS 405
           V N+ ITMYSR    R A  +F   + K +I+WNS+LSG +       E+  +FR+M R 
Sbjct: 211 VGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMRE 270

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
           GVE ++V+  S++  C    +L+  ++ H   ++R  +   L + N L+  Y++ G +  
Sbjct: 271 GVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRG-YESLLEVGNILMSRYSKCGVLEA 329

Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
            KSVF  MS R+ V++T++I+          A+ +F  M  + + P+ VT V +++A   
Sbjct: 330 VKSVFHQMSERNVVSWTTMIS-----SNKDDAVSIFLNMRFDGVYPNEVTFVGLINAVKC 384

Query: 526 SGLVVEGQK 534
           +  + EG K
Sbjct: 385 NEQIKEGLK 393



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 142/285 (49%), Gaps = 9/285 (3%)

Query: 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366
           ++D V   + L AC   G LK G +IHG +    +  +  V NA++ MY +     +A  
Sbjct: 75  HMDEVTLCLALKACR--GDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALC 132

Query: 367 LFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426
           +F+   +  +++WN++LSG+     A    F+ R M  +GV  +  T ++ L  C     
Sbjct: 133 IFENLVDPDVVSWNTILSGFDDNQIALN--FVVR-MKSAGVVFDAFTYSTALSFCVGSEG 189

Query: 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIA 486
              G +    +++  + ++ L++ NS + MY+RSG    A+ VFD MS +D +++ SL++
Sbjct: 190 FLLGLQLQSTVVKTGLESD-LVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLS 248

Query: 487 GYGIQGE-GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545
           G   +G  G  A+ +F +M +  ++ DHV+  +V++ C H    ++  +Q   +    G 
Sbjct: 249 GLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHE-TDLKLARQIHGLCIKRGY 307

Query: 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
              LE    ++  Y + G+L   K +  +M      + W T++ +
Sbjct: 308 ESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVS-WTTMISS 351


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 186/610 (30%), Positives = 300/610 (49%), Gaps = 67/610 (10%)

Query: 114 KLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRG 173
           + V   A+    ++A  L + +  R  + W  L++ Y R G   +A  ++ +  +RR   
Sbjct: 40  RRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARR--- 96

Query: 174 DNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
                                             ++    AL+S Y + G+VD A  LF 
Sbjct: 97  ----------------------------------NVVTWTALLSGYARAGRVDEAEALFQ 122

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV-NVITWNTIAGGCLRTGNFK 292
           +M ER+ VSWNTM+ AY S G  ++A+ LF     +G+ V +  +WN +    +R+GN  
Sbjct: 123 RMPERNVVSWNTMLEAYTSAGRVRDAWTLF-----DGMPVRDAGSWNILLAALVRSGNMD 177

Query: 293 GVLELLSRM--RTQETYLDSVATVIGLGACSHVGALKLGKE----IHGSAVRGCYGEYEN 346
              +L  RM  R    +   VA +   G+     AL  G      +  +A+   Y     
Sbjct: 178 KARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHR 237

Query: 347 VR-----------------NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           +                  N +IT + + +DL  A  LF     +++ITW +M++GY   
Sbjct: 238 IDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQS 297

Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
             +E +  +F  M   G+ PN VT    +  C+ +A L  G++ H  I + + F     +
Sbjct: 298 MQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTS-FQFDTFI 356

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            ++L+ +YA+ G++  A+ VFDL   +D +++  +IA Y   G G  A+ L+E+M +   
Sbjct: 357 ESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGY 416

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
           KP+ VT V +LSACSHSGLV EG + FE M     I  + EH+ C++DL  RAG L  AK
Sbjct: 417 KPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAK 476

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
            +I  +   P+S +W  LLG C  H N  IG+ AA  LLE  P N+G Y L+ N+YA+ G
Sbjct: 477 RLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAG 536

Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
            W + AK+R+ M D G++K PGC+W++  N    F+  D S+ ++  I  LL  + ++M+
Sbjct: 537 KWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRDKSHSESDLINSLLQDIHDIMR 596

Query: 690 DAGYVVKEEF 699
            A  V +++ 
Sbjct: 597 MACTVPRDDM 606



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 201/443 (45%), Gaps = 52/443 (11%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E+N V    ++  Y S     +A  L +   +R    WN+L++  VR G   +A  ++ +
Sbjct: 126 ERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALVRSGNMDKARKLFDR 185

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           M  R +      + +++        VD  R +    D   E ++   NA++S Y +  ++
Sbjct: 186 MPERNV----MAWTTMVAGIARSGSVDEARAL---FDGMPERNVVSWNAMISGYARNHRI 238

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D A  LF KM  RD  SWN MI+ +      + A  LF +M       NVITW T+  G 
Sbjct: 239 DEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRR----NVITWTTMMNGY 294

Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
           L++   +  L++ + M  +    + V  +  + ACS++  L  G+++H    +  +    
Sbjct: 295 LQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDT 354

Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
            + + L+ +Y++C ++R A  +F ++ EK +I+WN M++ Y H     E+  L+ +M   
Sbjct: 355 FIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEK 414

Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRR---AMFNEHLLLWNSLVEMYARSGK 462
           G +PN VT   +L  C+    +  G     Y+++    A+ +EH   +  L+++ +R+G+
Sbjct: 415 GYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEH---YTCLIDLCSRAGR 471

Query: 463 VPEAK----------------------------SVFDLMSR-------RDEVTYTSLIAG 487
           + +AK                            S+ DL +R        +  TYT L   
Sbjct: 472 LGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNI 531

Query: 488 YGIQGEGRVALKLFEEMNKNQIK 510
           Y   G+ + A K+  EMN   +K
Sbjct: 532 YASAGKWKEAAKIRSEMNDRGLK 554



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 190/418 (45%), Gaps = 36/418 (8%)

Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           N  V+     G+V  ARRLFD+  +RD VSW  +++AYA +G+  +A  LF         
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALF---DRPDAR 95

Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
            NV+TW  +  G  R G       L  RM  +      V+    L A +  G ++    +
Sbjct: 96  RNVVTWTALLSGYARAGRVDEAEALFQRMPERNV----VSWNTMLEAYTSAGRVRDAWTL 151

Query: 333 -HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDC 391
             G  VR   G +    N L+    R  ++  A  LF    E++++ W +M++G      
Sbjct: 152 FDGMPVRDA-GSW----NILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGS 206

Query: 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451
            +E+  LF  M     E N V+  +++   AR   +    E H   ++  M    +  WN
Sbjct: 207 VDEARALFDGM----PERNVVSWNAMISGYARNHRID---EAHDLFMK--MPTRDIASWN 257

Query: 452 SLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511
            ++  + +   +  A+ +FD M RR+ +T+T+++ GY    +   AL++F  M    I+P
Sbjct: 258 IMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRP 317

Query: 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF--ACMVDLYGRAGLLNKAK 569
           + VT +  + ACS+   + EGQ Q  +M  I     Q + F  + +++LY + G +  A+
Sbjct: 318 NQVTFLGAVDACSNLAGLSEGQ-QVHQM--ICKTSFQFDTFIESTLMNLYAKCGEIRLAR 374

Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA---EKLLET--RPENSGYYVLIA 622
           ++   +        W  ++ A   H   G+G  A    EK+ E   +P +  Y  L++
Sbjct: 375 KVF-DLSKEKDVISWNGMIAAYAHH---GVGVEAIHLYEKMQEKGYKPNDVTYVGLLS 428



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 37/234 (15%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +F   +  C  +  L++G+Q+H        + +  +   L+  YA       A  + + S
Sbjct: 321 TFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLS 380

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +I+ Y   G   EA+ +Y++MQ +  + ++ TY  +L AC     VD G 
Sbjct: 381 KEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGL 440

Query: 196 VV----------------HSC-IDACH-----------------EWSLFVHNALV---SM 218
            +                ++C ID C                  E S  V NAL+   + 
Sbjct: 441 RIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNS 500

Query: 219 YGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
           +G     D+A R   +    +A ++  + + YAS G WKEA ++  EM + G++
Sbjct: 501 HGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLK 554


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 183/621 (29%), Positives = 317/621 (51%), Gaps = 46/621 (7%)

Query: 76   SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
            +F  I+  C  + +   GKQ+H   I   ++ +  +    +  Y+ +    +A  L    
Sbjct: 428  TFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLI 487

Query: 136  NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
              +  + WN L     ++    EA+C+ K+M+   I  D+ ++ + + AC  +   + G+
Sbjct: 488  PYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGK 547

Query: 196  VVHSCI----DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
             +H C+      C   +  V ++L+ +Y K G V+ +R++F ++     V  N +I+ + 
Sbjct: 548  QIH-CLAIKYGICSNHA--VGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFV 604

Query: 252  SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                  EA QLF ++ ++G++ + +T+++I  GC  +G+    +                
Sbjct: 605  QNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGC--SGSLNSAI---------------- 646

Query: 312  ATVIGLGACSHVGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLRHA-YILFK 369
                             GK++H   ++ G   +   +  +L  +Y + K L  A  +L +
Sbjct: 647  -----------------GKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTE 689

Query: 370  MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
            M   K++  W +++SGY      + S   F  M    V  +  T AS+L  C+ V     
Sbjct: 690  MPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFAD 749

Query: 430  GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF-DLMSRRDEVTYTSLIAGY 488
            GKE H  I +   F  +    ++L++MY++ G V  +   F +L +++D + + S+I G+
Sbjct: 750  GKEIHGLITKSG-FGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGF 808

Query: 489  GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548
               G    AL LF++M + QIKPD VT + VL AC+HSGL+ EG+  F  M  +YG+ P+
Sbjct: 809  AKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPR 868

Query: 549  LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608
            L+H+AC +DL GR G L +A+E I ++P+ P   +WAT L AC++H++   G+ AA KL+
Sbjct: 869  LDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLV 928

Query: 609  ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDD 668
            E  P+ S  YVL+++++AATG W +    R  MR+ GV K PGC+W+  GN  S FLV D
Sbjct: 929  ELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLFLVQD 988

Query: 669  TSNVQAQEIYPLLGGLTELMK 689
              +     IY +LG LT +MK
Sbjct: 989  KYHPDNLRIYEMLGDLTGMMK 1009



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 251/516 (48%), Gaps = 46/516 (8%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           +FA ++     +KA  +G+Q+HA A+  GL+ N  +   L+  YA     ++A  + + S
Sbjct: 327 TFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLS 386

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
             +  + WN +++ +V++    EA+ +++ M    ++ D FT+ S+L AC  +     G+
Sbjct: 387 CEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGK 446

Query: 196 VVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
            VH   I  C + SLFV NA + MY K+G +  A+ LF  +  +D++SWN +    A   
Sbjct: 447 QVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNL 506

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
             +EA  +   M+  G+  + ++++T                                  
Sbjct: 507 EEEEAVCMLKRMRLHGITPDDVSFST---------------------------------- 532

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYEN--VRNALITMYSRCKDLRHAYILFKMTA 372
             + ACS++ A + GK+IH  A++  YG   N  V ++LI +YS+  D+  +  +F    
Sbjct: 533 -AINACSNIRATETGKQIHCLAIK--YGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVD 589

Query: 373 EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432
             SI+  N++++G+   +  +E+  LF+++ + G++P+ VT +SIL  C+   N   GK+
Sbjct: 590 ASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQ 649

Query: 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM-SRRDEVTYTSLIAGYGIQ 491
            HCY L+  +  +  LL  SL  +Y +S  + +A  +   M   ++   +T++I+GY   
Sbjct: 650 VHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQN 709

Query: 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH 551
           G G  +L  F  M    ++ D  T  +VL ACS      +G K+   + +  G       
Sbjct: 710 GYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADG-KEIHGLITKSGFGSYETA 768

Query: 552 FACMVDLYGRAGLLNKA----KEIITKMPYTPTSAM 583
            + ++D+Y + G +  +    KE+  K    P ++M
Sbjct: 769 TSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSM 804



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 228/480 (47%), Gaps = 35/480 (7%)

Query: 146 LISLYVRDGFYAEALCVYKQMQ-SRRIRGDNFTYPSVLKACGEMMDVDFGRVVH-SCIDA 203
           L+S + R G   + L  ++ ++ +   R D F    VL AC  +  + +GR VH   + +
Sbjct: 128 LLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKS 187

Query: 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLF 263
               S+F   ALV MY K G V  ARR+FD +   D + W++MI+ Y   G ++EA  LF
Sbjct: 188 GFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALF 247

Query: 264 VEMQEEGVEVNVIT-------------------------------WNTIAGGCLRTGNFK 292
             M + G   + +T                               WN +  G  ++G   
Sbjct: 248 SRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEF 307

Query: 293 GVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALI 352
            VL L   MR+   +         L A +++ A   G+++H +AV         V ++LI
Sbjct: 308 NVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLI 367

Query: 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412
            +Y++C     A  +F ++ EK+I+ WN+ML+G+   +  EE+  +F+ M R  ++ +  
Sbjct: 368 NLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEF 427

Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
           T  SIL  C  +++   GK+ HC  ++  M +  L + N+ ++MY++ G + +AK++F L
Sbjct: 428 TFVSILGACTYLSSFYLGKQVHCVTIKNCM-DISLFVANATLDMYSKYGAIGDAKALFSL 486

Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
           +  +D +++ +L  G     E   A+ + + M  + I PD V+    ++ACS+     E 
Sbjct: 487 IPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNI-RATET 545

Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
            KQ   +   YGI       + ++DLY + G +  +++I  ++  +    + A + G  Q
Sbjct: 546 GKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQ 605



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 135/585 (23%), Positives = 248/585 (42%), Gaps = 58/585 (9%)

Query: 48  AGRGNLSKAFEAFTRIRITAASHDVVLDSF--AHIIFCCGKVKALAQGKQLHACAIALGL 105
           A  G+      AF  IR TA       D F  A ++  C +V  LA G+Q+H   +  G 
Sbjct: 133 ARSGSPGDVLGAFRYIRCTAGGRP---DQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGF 189

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
             +      LV  YA      NA  + +       + W+ +I+ Y R G Y EAL ++ +
Sbjct: 190 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSR 249

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC--IDACHEWSLFVHNALVSMYGKFG 223
           M       D  T  +++           GR+ H+   +      S    NA++S + + G
Sbjct: 250 MDKMGSAPDQVTLVTIISTLASS-----GRLDHATALLKKMPTPSTVAWNAVISGHAQSG 304

Query: 224 -QVDV--------------ARRLFDKML------------------------ERDAVSWN 244
            + +V               R  F  ML                        + +    +
Sbjct: 305 LEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGS 364

Query: 245 TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304
           ++I+ YA  G   +A  +F    +   E N++ WN +  G ++    +  + +   M   
Sbjct: 365 SLINLYAKCGCPSDAKNVF----DLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRY 420

Query: 305 ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHA 364
               D    V  LGAC+++ +  LGK++H   ++ C      V NA + MYS+   +  A
Sbjct: 421 TLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA 480

Query: 365 YILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424
             LF +   K  I+WN++  G       EE+  + + M   G+ P+ V+ ++ +  C+ +
Sbjct: 481 KALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNI 540

Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
              + GK+ HC  ++  + + H  + +SL+++Y++ G V  ++ +F  +     V   +L
Sbjct: 541 RATETGKQIHCLAIKYGICSNH-AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINAL 599

Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
           IAG+        A++LF+++ K+ +KP  VT  ++LS CS S     G KQ    T   G
Sbjct: 600 IAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIG-KQVHCYTLKSG 658

Query: 545 I-FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588
           + +        +  +Y ++ +L  A +++T+MP       W  ++
Sbjct: 659 VLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAII 703



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
           + +HG  +RG       + ++L+ +Y +   + +A+       E++    +S+LS +   
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 390 DCAEESAFLFREM-FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448
               +    FR +   +G  P+   +A +L  C+RV  L +G++ HC +++   F+  + 
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSG-FSSSVF 194

Query: 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ 508
              +LV+MYA+ G VP A+ VFD ++  D + ++S+IA Y   G  + AL LF  M+K  
Sbjct: 195 CEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 254

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568
             PD VT+V ++S  + SG +       ++M +     P    +  ++  + ++GL    
Sbjct: 255 SAPDQVTLVTIISTLASSGRLDHATALLKKMPT-----PSTVAWNAVISGHAQSGLEFNV 309

Query: 569 KEIITKM---PYTPTSAMWATLLGACQIHRNTGIGEWA-AEKLLETRPENSGYYVLIANM 624
             +   M      PT + +A++L A    +    G+   A  ++     N      + N+
Sbjct: 310 LGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINL 369

Query: 625 YAATGC 630
           YA  GC
Sbjct: 370 YAKCGC 375


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 183/592 (30%), Positives = 309/592 (52%), Gaps = 45/592 (7%)

Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
           +V  YA  S  + A  L + +     + +N LIS Y        A+ ++K+M+      D
Sbjct: 80  IVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVD 139

Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF--VHNALVSMYGKFGQVDVARRLF 232
            FT   ++ AC +   VD  + +H C      +  +  V+NA V+ Y K G +  A  +F
Sbjct: 140 GFTLSGLIAACCDR--VDLIKQLH-CFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVF 196

Query: 233 DKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291
             M   RD VSWN+MI AY       +A  L+ EM  +G ++++ T  ++          
Sbjct: 197 YGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA------- 249

Query: 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351
                           L S+  +IG            G++ HG  ++  + +  +V + L
Sbjct: 250 ----------------LTSLDHLIG------------GRQFHGKLIKAGFHQNSHVGSGL 281

Query: 352 ITMYSRC---KDLRHAYILFKMTAEKSIITWNSMLSGYT-HLDCAEESAFLFREMFRSGV 407
           I  YS+C     +  +  +F+      ++ WN+M+SGY+ + + +EE+   FR+M R G 
Sbjct: 282 IDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGH 341

Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
            P+  +   +   C+ +++   GK+ H   ++  + +  + + N+L+ +Y +SG + +A+
Sbjct: 342 RPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDAR 401

Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
            VFD M   + V++  +I GY   G G  AL+L++ M  + I P+++T VA+LSAC+H G
Sbjct: 402 RVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCG 461

Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
            V EGQK F  M   + I P+ EH++CM+DL GRAG L +A+  I  MPY P S  WA L
Sbjct: 462 KVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAAL 521

Query: 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647
           LGAC+ H+N  + E AA++L+  +P  +  YV++ANMYA  G W+++A VR  MR   +R
Sbjct: 522 LGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIR 581

Query: 648 KIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
           K PGC+W++       F+ +D S+   +E+   L  + + MK  GYV+ +++
Sbjct: 582 KKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKW 633


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 192/628 (30%), Positives = 321/628 (51%), Gaps = 42/628 (6%)

Query: 94  KQLHACAIALGLEKNPVLVPKLVTFYASFSLYN-------NACFLVENSNIRYPLPWNLL 146
           +Q HA  +A GL  +P L+P LV   A+FS ++               S++ +      L
Sbjct: 19  RQAHARLVAAGLSASPRLLPALVA--AAFSAHSPRHASAALRAAGPAASSVSHNTLIERL 76

Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHE 206
                     A+AL  Y  M +  +  + FT+  +L+AC  +      R VH  I     
Sbjct: 77  AGARGHRPVPADALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPCRCVHGQIV---R 133

Query: 207 WS----LFVHNALVSMY---GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259
           W     +FV N L+ +Y   G  G+V  AR++FD+M++RD VSWN++I  Y S G +  A
Sbjct: 134 WGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGA 193

Query: 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA 319
            +LF  M E     NV++WNT+  G  R G+      +  RM ++    ++++  + +  
Sbjct: 194 MELFEAMPER----NVVSWNTLVAGFARVGDMVTAQTVFDRMPSR----NAISWNLMISG 245

Query: 320 CSHVGALKLGKEIHGSAVRGCYGEYENVRN-----ALITMYSRCKDLRHAYILFKMTAEK 374
            +  G ++        A R  +   +  ++     A+++ Y++  DL  A  LF     K
Sbjct: 246 YASSGDVE--------AARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLK 297

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEF 433
           ++++WN+M++GY H     E+   F+ M   G   P+  T+ S++  CA++ ++++    
Sbjct: 298 NLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWI 357

Query: 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE 493
             +I R++  +  + L N+L++M+A+ G V  A+S+F  M  R  +T+T++I+G+   G 
Sbjct: 358 SSFI-RKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGL 416

Query: 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA 553
            R AL ++  M +  ++ D +  +A L+AC H GL+ EG   F  M   Y I P++EH+ 
Sbjct: 417 CREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYG 476

Query: 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613
           C+VDL GRAG L +A   I  MP  P+  +WATLL +C  H N    ++ ++K+ E  P 
Sbjct: 477 CVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAEFIDYVSKKITELEPF 536

Query: 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673
           NS Y VL++N  A  G WD +   RT MR+ G+ K+PG + +  G+    FL  DT + +
Sbjct: 537 NSSYQVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPGSSSIQVGSEVHEFLAKDTMHER 596

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEEFCS 701
            +EIY  + GL  LM+          CS
Sbjct: 597 RKEIYETVDGLMALMRHTEEAPWPRHCS 624


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 323/619 (52%), Gaps = 30/619 (4%)

Query: 96  LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
           LHA ++  G  +       L+T Y   S  ++A  L +    R    W +LIS + R G 
Sbjct: 311 LHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGS 370

Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-----CIDACHEWSLF 210
                 ++++M+++    + +T  S+ K C   +++  G+ VH+      IDA     + 
Sbjct: 371 SEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDA----DVV 426

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           + N+++ +Y K    + A R+F+ M E D VSWN MISAY   G  +++  +F  +  + 
Sbjct: 427 LGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYK- 485

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
              +V++WNTI  G ++ G  +  LE L  M    T    V   I L   S +  ++LG+
Sbjct: 486 ---DVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGR 542

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA----------------EK 374
           ++HG  ++  +     +R++L+ MY +C  + +A I+ K                   + 
Sbjct: 543 QLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKA 602

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
            I++W  M+SGY      E+    FR M R  V  +  T+ +I+  CA    L+ G+  H
Sbjct: 603 GIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVH 662

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
            Y   +        + +SL++MY++SG + +A ++F   +  + V +TS+I+G  + G+G
Sbjct: 663 AYN-HKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQG 721

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
           + A+ LFEEM    I P+ VT + VL+AC H+GL+ EG + F  M   Y I P +EH   
Sbjct: 722 KQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTS 781

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDLYGRAG L + K  I +   +  +++W + L +C++H+N  +G+W +E LL+  P +
Sbjct: 782 MVDLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSD 841

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQA 674
            G YVL++NM A+   WD+ A+VR+ M   G++K PG +W+   +    F++ D S+ Q 
Sbjct: 842 PGAYVLLSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQD 901

Query: 675 QEIYPLLGGLTELMKDAGY 693
           +EIY  L  L   +K+ GY
Sbjct: 902 EEIYSYLDILIGRLKEIGY 920



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 191/475 (40%), Gaps = 89/475 (18%)

Query: 44  LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103
           +  F+  G+    F+ F  +R   A  +    + + +  CC     L  GK +HA  +  
Sbjct: 362 ISGFSRAGSSEVVFKLFREMRAKGACPNQY--TLSSLFKCCSLDINLQLGKGVHAWMLRN 419

Query: 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY 163
           G++ + VL   ++  Y    ++  A  + E  N    + WN++IS Y+R G   ++L ++
Sbjct: 420 GIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMF 479

Query: 164 KQMQSRRIRGDNFTYPSVLK---------------ACGEMMD----------------VD 192
           +++  + +   N     +++                CG                    V+
Sbjct: 480 RRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVE 539

Query: 193 FGRVVHSCI---DACHEWSLFVHNALVSMYGKFGQVDVARRLFD---------------- 233
            GR +H  +     C +   F+ ++LV MY K G++D A  +                  
Sbjct: 540 LGRQLHGMVLKFGFCRDG--FIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTC 597

Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
           K L+   VSW  M+S Y   G +++  + F  M  E V V++ T  TI            
Sbjct: 598 KELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTI------------ 645

Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
                                  + AC++ G L+ G+ +H    +  +     V ++LI 
Sbjct: 646 -----------------------ISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLID 682

Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
           MYS+   L  A+ +F+ T E +I+ W SM+SG       +++  LF EM   G+ PN VT
Sbjct: 683 MYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVT 742

Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKS 468
              +L  C     L+ G  +   +      N  +    S+V++Y R+G + E K+
Sbjct: 743 FLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKN 797


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 179/621 (28%), Positives = 316/621 (50%), Gaps = 43/621 (6%)

Query: 75  DSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN 134
           +++  ++  C     +  G+ +H   + LG +   V+   L   Y     + NA  L + 
Sbjct: 11  ETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDK 70

Query: 135 SNIRYPLPWNLLISLYVRDGFYAEALC-VYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF 193
            +++  L W   ++         E +  V+ +M + ++  D+FT+ ++L+    +  +  
Sbjct: 71  RSVK-DLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQL 129

Query: 194 GRVVHSCIDACHEWS--LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYA 251
            ++VH CI    + S  L V+ A++S+Y K   +  AR+LFDKM E+D V          
Sbjct: 130 AKIVH-CIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRV---------- 178

Query: 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311
                                     WN +     R G     LEL   M       D  
Sbjct: 179 -------------------------VWNIMIAAYAREGKPTECLELFKSMARSGIRSDLF 213

Query: 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371
             +  + + + +  +  GK+ H   +R       +V N+LI MY  CK L  A  +F   
Sbjct: 214 TALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWM 273

Query: 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431
            +KS+I+W++M+ GY     +  +  LF +M   G++ ++V + +ILP    +  L++ K
Sbjct: 274 TDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVK 333

Query: 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD--LMSRRDEVTYTSLIAGYG 489
             H Y ++  +      L  +L+  YA+ G +  A+ +F+   +  +D + + S+I+ + 
Sbjct: 334 YLHGYSMKLGL-TSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHA 392

Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
             G+     KL+  M  +  KPD VT + +L+AC +SGLV +G++ F+ MT  YG  P  
Sbjct: 393 NHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQ 452

Query: 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
           EH+ACMV+L GRAGL+++A E++  MP  P + +W  LL AC++H  + + E+AAEKL+ 
Sbjct: 453 EHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLIN 512

Query: 610 TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDT 669
             P N+G Y+L++N+YAA G WD +AK+R+ +R+ G++KIPGC+W++     + F V D 
Sbjct: 513 MEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQ 572

Query: 670 SNVQAQEIYPLLGGLTELMKD 690
           ++ +A +IY +LG L   +K+
Sbjct: 573 THPRAGDIYTILGNLELEIKE 593



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 195/443 (44%), Gaps = 50/443 (11%)

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLF--VHNALVSMYGKFG 223
           M ++ +  D  TYP VL++C    +V FGR +H  +     + LF  V  AL  MY +  
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLG-FDLFDVVATALAEMYEECI 59

Query: 224 QVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAG 283
           + + A +LFDK   +D + W + ++                    EG +           
Sbjct: 60  EFENAHQLFDKRSVKD-LGWPSSLTT-------------------EGPQ----------- 88

Query: 284 GCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGE 343
                 N +G+  +  RM  ++   DS      L   + + +++L K +H  A+      
Sbjct: 89  ----NDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSG 144

Query: 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMF 403
              V  A++++YS+ + L  A  LF    EK  + WN M++ Y       E   LF+ M 
Sbjct: 145 DLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMA 204

Query: 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463
           RSG+  +  T   ++   A++  +  GK+ H +ILR    +  + + NSL++MY     +
Sbjct: 205 RSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGS-DSQVSVHNSLIDMYCECKIL 263

Query: 464 PEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523
             A  +F+ M+ +  ++++++I GY   G+   AL LF +M  + I+ D V M+ +L A 
Sbjct: 264 DSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAF 323

Query: 524 SHSGLVVEGQKQFERMTSIYGI--FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS 581
            H G  +E  K     +   G+   P L     ++  Y + G +  A+ +  +       
Sbjct: 324 VHIG-ALENVKYLHGYSMKLGLTSLPSLN--TALLITYAKCGSIEMAQRLFEEEKIDDKD 380

Query: 582 -AMWATLLGACQIHRNTGIGEWA 603
             MW +++ A   H     G+W+
Sbjct: 381 LIMWNSMISAHANH-----GDWS 398


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 184/631 (29%), Positives = 331/631 (52%), Gaps = 57/631 (9%)

Query: 63  IRITAASHDVVLDSFAH---IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119
           +R+ +A   VV D+F +   + FC G  +    G QL +  +  GLE + V+    +T Y
Sbjct: 88  VRMKSAG--VVFDAFTYSTALSFCVGS-EGFLLGLQLQSTVVKTGLESDLVVGNSFITMY 144

Query: 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA-EALCVYKQMQSRRIRGDNFTY 178
           +    +  A  + +  + +  + WN L+S   ++G +  EA+ +++ M    +  D+ ++
Sbjct: 145 SRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSF 204

Query: 179 PSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE 237
            SV+  C    D+   R +H  CI   +E  L V N L+S Y K G ++  + +F +M E
Sbjct: 205 TSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSE 264

Query: 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297
           R+ VSW TMIS+        +A  +F+ M+ +GV  N +T+                + L
Sbjct: 265 RNVVSWTTMISSNKD-----DAVSIFLNMRFDGVYPNEVTF----------------VGL 303

Query: 298 LSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357
           ++ ++  E                    +K G +IHG  ++  +    +V N+ IT+Y++
Sbjct: 304 INAVKCNEQ-------------------IKEGLKIHGLCIKTGFVSEPSVGNSFITLYAK 344

Query: 358 CKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
            + L  A   F+    + II+WN+M+SG+     + E+  +F     +   PN  T  S+
Sbjct: 345 FEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSA-AAETMPNEYTFGSV 403

Query: 418 LPLCARVANL--QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
           L   A   ++  + G+  H ++L+  + N   ++ ++L++MYA+ G + E++ VF+ MS+
Sbjct: 404 LNAIAFAEDISVKQGQRCHAHLLKLGL-NSCPVVSSALLDMYAKRGNIDESEKVFNEMSQ 462

Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
           +++  +TS+I+ Y   G+    + LF +M K  + PD VT ++VL+AC+  G+V +G + 
Sbjct: 463 KNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEI 522

Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
           F  M  +Y + P  EH++CMVD+ GRAG L +A+E+++++P  P  +M  ++LG+C++H 
Sbjct: 523 FNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHG 582

Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
           N  +G   AE  +E +PE SG YV + N+YA    WDK A++R  MR   V K  G +W+
Sbjct: 583 NVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWI 642

Query: 656 DAGN-----VFSPFLVDDTSNVQAQEIYPLL 681
           D G+         F   D S+ ++ EIY ++
Sbjct: 643 DVGDTEGSLTMQGFSSGDKSHPKSDEIYRMV 673



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 156/325 (48%), Gaps = 45/325 (13%)

Query: 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
           V NA++ MY K G+ D A  +F+ +++ D VSWNT++S +    +   A    V M+  G
Sbjct: 38  VSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAG 94

Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330
           V  +  T++T    C+ +  F   L+L S             TV+  G  S +       
Sbjct: 95  VVFDAFTYSTALSFCVGSEGFLLGLQLQS-------------TVVKTGLESDL------- 134

Query: 331 EIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLD 390
                           V N+ ITMYSR    R A  +F   + K +I+WNS+LSG +   
Sbjct: 135 ---------------VVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEG 179

Query: 391 C-AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
               E+  +FR+M R GVE ++V+  S++  C    +L+  ++ H   ++R  +   L +
Sbjct: 180 TFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRG-YESLLEV 238

Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
            N L+  Y++ G +   KSVF  MS R+ V++T++I+          A+ +F  M  + +
Sbjct: 239 GNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS-----SNKDDAVSIFLNMRFDGV 293

Query: 510 KPDHVTMVAVLSACSHSGLVVEGQK 534
            P+ VT V +++A   +  + EG K
Sbjct: 294 YPNEVTFVGLINAVKCNEQIKEGLK 318



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 141/284 (49%), Gaps = 9/284 (3%)

Query: 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYIL 367
           +D V   + L AC   G LK G +IHG +    +  +  V NA++ MY +     +A  +
Sbjct: 1   MDEVTLCLALKACR--GDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCI 58

Query: 368 FKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427
           F+   +  +++WN++LSG+     A    F+ R M  +GV  +  T ++ L  C      
Sbjct: 59  FENLVDPDVVSWNTILSGFDDNQIALN--FVVR-MKSAGVVFDAFTYSTALSFCVGSEGF 115

Query: 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG 487
             G +    +++  + ++ L++ NS + MY+RSG    A+ VFD MS +D +++ SL++G
Sbjct: 116 LLGLQLQSTVVKTGLESD-LVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSG 174

Query: 488 YGIQGE-GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546
              +G  G  A+ +F +M +  ++ DHV+  +V++ C H    ++  +Q   +    G  
Sbjct: 175 LSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHE-TDLKLARQIHGLCIKRGYE 233

Query: 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
             LE    ++  Y + G+L   K +  +M      + W T++ +
Sbjct: 234 SLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVS-WTTMISS 276


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 179/520 (34%), Positives = 274/520 (52%), Gaps = 36/520 (6%)

Query: 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKG 254
           R      D   E +    N LVS Y + G +  AR++FDKM ER+ VSW  MI  Y  +G
Sbjct: 11  REARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEG 70

Query: 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV 314
           L +EA  LF  M E     NV++W  + GG +  G      +L   M  ++      +T 
Sbjct: 71  LIEEAELLFWRMPER----NVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVV---ASTN 123

Query: 315 IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374
           +  G CS  G L   +EI           ++ +    +  ++             ++ EK
Sbjct: 124 MIDGLCSE-GRLIEAREI-----------FDEMPQRNVVAWTSM-----------ISGEK 160

Query: 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434
              TW++M+  Y       E+  LF  M R GV P++ ++ S+L +C  +A+L HG++ H
Sbjct: 161 DDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVH 220

Query: 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEG 494
             ++R + F+  + + + L+ MY + G +  AK VFD  S +D V + S+IAGY   G G
Sbjct: 221 SQLVR-SQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFG 279

Query: 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFAC 554
             AL++F +M  + I PD +T + VLSACS++G V EG + FE M S Y + P+ EH+AC
Sbjct: 280 EKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYAC 339

Query: 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614
           MVDL GRAG LN+A  +I  MP    + +W  LLGAC+ H+N  + E AA+KLL+  P N
Sbjct: 340 MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNN 399

Query: 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFL-VDDTSNVQ 673
           +G Y+L++N+Y++   W  + ++R  MR   +RK PGC+W++       F     TS+ +
Sbjct: 400 AGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPE 459

Query: 674 AQEIYPLLGGLTELMKDAGYVVKEEF----CSEEEIVEEI 709
            + I   LG L  L+++AGY     F      EEE V  +
Sbjct: 460 HEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSL 499



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 190/446 (42%), Gaps = 60/446 (13%)

Query: 106 EKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165
           E N +    LV+ Y    + + A  + +    R  + W  +I  YV++G   EA  ++ +
Sbjct: 22  ETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWR 81

Query: 166 MQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQV 225
           M  R +                                   W++ +   +     + G+V
Sbjct: 82  MPERNVVS---------------------------------WTVMLGGLI-----EDGRV 103

Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
           D AR+LFD M  +D V+   MI    S+G   EA ++F EM +     NV+ W ++  G 
Sbjct: 104 DEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQR----NVVAWTSMISGE 159

Query: 286 LRTGNFKGVLELLSR------------MRTQETYLDSVATVIG-LGACSHVGALKLGKEI 332
              G +  ++++  R            +  +E    S  +VI  L  C  + +L  G+++
Sbjct: 160 KDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQV 219

Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
           H   VR  +     V + LITMY +C DL  A  +F   + K I+ WNS+++GY      
Sbjct: 220 HSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFG 279

Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
           E++  +F +MF S + P+ +T   +L  C+    ++ G E    +  +   +     +  
Sbjct: 280 EKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYAC 339

Query: 453 LVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGE---GRVALKLFEEMNKNQ 508
           +V++  R+GK+ EA ++ + M    D + + +L+             +A K   ++  N 
Sbjct: 340 MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNN 399

Query: 509 IKPDHVTMVAVLSACSHSGLVVEGQK 534
             P ++ +  + S+ S    VVE +K
Sbjct: 400 AGP-YILLSNLYSSQSRWKDVVELRK 424



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 120/287 (41%), Gaps = 42/287 (14%)

Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE-----------MF 403
           Y + K  R A  LF    E + I+WN ++SGY       E+  +F +           M 
Sbjct: 4   YFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMI 63

Query: 404 RSGVEPNYVTIASILPLCARVAN-----------LQHGKEFHCYILRRAMFNEHLLLWNS 452
           R  V+   +  A +L       N           ++ G+      L   M  + ++   +
Sbjct: 64  RGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTN 123

Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAG-------------YGIQGEGRVALK 499
           +++     G++ EA+ +FD M +R+ V +TS+I+G             Y  +G    AL 
Sbjct: 124 MIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALA 183

Query: 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT-SIYGIFPQLEHFACMVDL 558
           LF  M +  ++P   ++++VLS C     +  G++   ++  S + I   +   + ++ +
Sbjct: 184 LFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDI--DIYVSSVLITM 241

Query: 559 YGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605
           Y + G L  AK +  +   +    MW +++     H   G GE A E
Sbjct: 242 YIKCGDLVTAKRVFDRFS-SKDIVMWNSIIAGYAQH---GFGEKALE 284



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 76  SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS 135
           S   ++  CG + +L  G+Q+H+  +    + +  +   L+T Y        A  + +  
Sbjct: 199 SVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRF 258

Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
           + +  + WN +I+ Y + GF  +AL V+  M S  I  D  T+  VL AC     V  G 
Sbjct: 259 SSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGL 318

Query: 196 VVHSCIDACHEWSLFVHN--ALVSMYGKFGQVDVARRLFDKM-LERDAVSWNTMISA 249
            +   + + ++      +   +V + G+ G+++ A  L + M +E DA+ W  ++ A
Sbjct: 319 EIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGA 375


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,876,038,905
Number of Sequences: 23463169
Number of extensions: 444995107
Number of successful extensions: 1143044
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9302
Number of HSP's successfully gapped in prelim test: 2368
Number of HSP's that attempted gapping in prelim test: 919895
Number of HSP's gapped (non-prelim): 67394
length of query: 710
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 560
effective length of database: 8,839,720,017
effective search space: 4950243209520
effective search space used: 4950243209520
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)