Query 005174
Match_columns 710
No_of_seqs 706 out of 4408
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 19:16:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8E-107 2E-111 918.9 79.4 671 33-708 47-786 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.6E-86 5.7E-91 733.5 62.5 530 137-702 84-615 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.9E-77 1.3E-81 675.0 58.3 612 69-701 48-730 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.6E-68 3.5E-73 591.7 54.4 471 37-547 87-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 3.5E-68 7.7E-73 589.5 56.9 531 33-581 366-915 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.4E-65 3.1E-70 568.7 61.2 555 137-707 367-968 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.3E-34 2E-38 330.2 68.0 586 44-645 268-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-33 5.1E-38 326.9 68.8 596 34-645 224-833 (899)
9 PRK11447 cellulose synthase su 100.0 1.5E-24 3.3E-29 252.6 65.1 593 34-642 59-738 (1157)
10 PRK11447 cellulose synthase su 100.0 2.3E-23 4.9E-28 242.8 64.2 594 36-646 27-702 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.6E-20 3.5E-25 208.8 65.0 570 47-645 54-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 5.3E-20 1.2E-24 204.6 61.0 576 36-646 77-742 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.4E-20 3E-25 185.0 37.5 443 143-633 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 2.4E-19 5.1E-24 176.5 32.0 358 276-646 117-487 (966)
15 KOG2002 TPR-containing nuclear 99.9 4.2E-17 9.2E-22 169.5 47.2 577 53-647 146-801 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-17 6.7E-22 179.9 45.4 417 212-644 130-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 4.1E-18 9E-23 177.4 30.0 291 220-514 46-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 8.4E-18 1.8E-22 175.1 30.5 291 354-651 44-354 (389)
19 KOG2002 TPR-containing nuclear 99.8 7.3E-16 1.6E-20 160.5 42.0 477 90-576 252-796 (1018)
20 PRK10049 pgaA outer membrane p 99.8 1.2E-15 2.6E-20 170.3 46.7 185 459-643 249-455 (765)
21 PRK15174 Vi polysaccharide exp 99.8 4E-16 8.7E-21 170.3 39.9 350 220-614 16-385 (656)
22 KOG4422 Uncharacterized conser 99.8 5.8E-15 1.3E-19 139.8 41.8 337 35-441 114-463 (625)
23 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-15 3.5E-20 166.3 42.9 418 143-613 130-574 (615)
24 PRK14574 hmsH outer membrane p 99.8 2.8E-14 6E-19 156.1 44.7 196 417-616 298-519 (822)
25 PRK15174 Vi polysaccharide exp 99.8 1.5E-14 3.2E-19 158.2 42.3 348 121-475 17-380 (656)
26 KOG4318 Bicoid mRNA stability 99.8 1E-14 2.2E-19 150.2 36.4 552 58-642 11-734 (1088)
27 KOG2076 RNA polymerase III tra 99.8 1.3E-12 2.8E-17 135.8 51.7 467 34-507 136-695 (895)
28 PRK10049 pgaA outer membrane p 99.7 4.7E-14 1E-18 157.7 44.7 283 46-405 24-339 (765)
29 KOG0495 HAT repeat protein [RN 99.7 1.1E-11 2.4E-16 124.0 54.7 462 183-660 384-894 (913)
30 PRK14574 hmsH outer membrane p 99.7 8.1E-13 1.7E-17 144.7 47.6 425 120-575 45-510 (822)
31 KOG0495 HAT repeat protein [RN 99.7 2E-11 4.3E-16 122.2 51.4 541 86-654 263-854 (913)
32 KOG2003 TPR repeat-containing 99.7 1.1E-13 2.4E-18 131.9 32.9 464 146-630 207-709 (840)
33 KOG2076 RNA polymerase III tra 99.7 1.1E-11 2.5E-16 129.0 45.0 538 86-626 151-785 (895)
34 KOG4422 Uncharacterized conser 99.6 2.8E-12 6.2E-17 121.8 33.9 237 36-305 206-463 (625)
35 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.4E-19 143.4 11.3 253 383-641 15-274 (280)
36 KOG2003 TPR repeat-containing 99.6 1.1E-11 2.3E-16 118.6 29.9 504 40-564 165-709 (840)
37 KOG4318 Bicoid mRNA stability 99.5 7E-11 1.5E-15 122.4 35.8 517 96-648 12-598 (1088)
38 KOG1915 Cell cycle control pro 99.5 1.3E-09 2.9E-14 105.4 40.7 447 143-624 76-549 (677)
39 KOG1126 DNA-binding cell divis 99.5 3.2E-12 7E-17 128.9 22.5 273 360-643 334-619 (638)
40 KOG1126 DNA-binding cell divis 99.5 3.5E-12 7.7E-17 128.6 22.1 246 392-643 335-585 (638)
41 KOG1915 Cell cycle control pro 99.5 6.8E-09 1.5E-13 100.6 43.0 412 86-507 85-536 (677)
42 KOG1155 Anaphase-promoting com 99.5 3.8E-10 8.3E-15 108.9 33.5 213 447-689 330-555 (559)
43 PRK10747 putative protoheme IX 99.5 8.2E-11 1.8E-15 121.3 30.7 224 352-611 160-391 (398)
44 KOG0547 Translocase of outer m 99.5 2.9E-10 6.3E-15 110.4 31.6 212 423-642 338-564 (606)
45 KOG1155 Anaphase-promoting com 99.4 3.2E-09 6.9E-14 102.7 36.9 153 385-541 339-494 (559)
46 PRK10747 putative protoheme IX 99.4 1.5E-10 3.3E-15 119.3 29.9 275 358-643 97-389 (398)
47 KOG1173 Anaphase-promoting com 99.4 2.5E-09 5.5E-14 106.1 35.0 260 376-642 244-516 (611)
48 KOG2047 mRNA splicing factor [ 99.4 1.4E-07 3.1E-12 95.1 45.1 155 82-236 110-275 (835)
49 TIGR00540 hemY_coli hemY prote 99.4 1E-09 2.2E-14 113.9 31.6 225 351-609 159-398 (409)
50 PF13429 TPR_15: Tetratricopep 99.3 2.9E-12 6.3E-17 126.2 9.6 154 451-608 114-275 (280)
51 TIGR00540 hemY_coli hemY prote 99.3 3.4E-09 7.3E-14 110.0 32.3 139 361-503 245-395 (409)
52 KOG2047 mRNA splicing factor [ 99.3 6.7E-07 1.5E-11 90.4 46.2 93 37-135 102-195 (835)
53 COG3071 HemY Uncharacterized e 99.3 5.8E-09 1.3E-13 99.5 29.3 285 289-609 98-389 (400)
54 COG2956 Predicted N-acetylgluc 99.3 8.1E-09 1.8E-13 95.4 28.5 157 349-507 111-278 (389)
55 KOG1173 Anaphase-promoting com 99.3 2.7E-08 5.8E-13 99.0 33.6 286 274-591 243-532 (611)
56 COG3071 HemY Uncharacterized e 99.3 3.2E-09 6.9E-14 101.2 26.2 282 49-338 96-389 (400)
57 TIGR02521 type_IV_pilW type IV 99.3 7.7E-10 1.7E-14 106.1 23.1 198 444-643 28-231 (234)
58 KOG3785 Uncharacterized conser 99.3 6.1E-08 1.3E-12 90.6 33.0 455 44-613 29-493 (557)
59 PF13041 PPR_2: PPR repeat fam 99.3 9.4E-12 2E-16 85.3 5.6 50 238-287 1-50 (50)
60 KOG1174 Anaphase-promoting com 99.3 1.5E-07 3.2E-12 90.0 35.3 393 209-615 97-505 (564)
61 KOG4162 Predicted calmodulin-b 99.3 3E-07 6.4E-12 95.1 39.6 128 516-646 653-785 (799)
62 PF13041 PPR_2: PPR repeat fam 99.2 2.1E-11 4.7E-16 83.5 6.6 50 476-525 1-50 (50)
63 KOG0985 Vesicle coat protein c 99.2 3.4E-07 7.4E-12 96.7 39.6 157 461-640 1089-1245(1666)
64 KOG0547 Translocase of outer m 99.2 1.5E-07 3.2E-12 92.1 34.2 217 386-610 336-566 (606)
65 KOG2376 Signal recognition par 99.2 7.2E-07 1.6E-11 89.5 39.1 245 382-637 230-513 (652)
66 COG2956 Predicted N-acetylgluc 99.2 9.3E-09 2E-13 95.0 23.8 265 50-321 48-326 (389)
67 KOG1129 TPR repeat-containing 99.2 6.7E-10 1.4E-14 102.3 16.3 231 380-646 227-460 (478)
68 KOG1840 Kinesin light chain [C 99.2 1.2E-08 2.6E-13 104.6 25.9 231 412-642 200-477 (508)
69 KOG2376 Signal recognition par 99.1 2.5E-06 5.5E-11 85.7 38.6 219 38-269 13-253 (652)
70 KOG1156 N-terminal acetyltrans 99.1 2.6E-06 5.5E-11 86.6 39.0 450 153-641 20-508 (700)
71 KOG1156 N-terminal acetyltrans 99.1 1.7E-05 3.7E-10 80.9 44.6 49 595-643 639-687 (700)
72 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-08 2.9E-13 100.2 22.5 213 425-646 40-267 (296)
73 TIGR02521 type_IV_pilW type IV 99.1 1.8E-08 4E-13 96.5 22.2 191 379-575 34-229 (234)
74 PRK12370 invasion protein regu 99.1 3.3E-08 7.1E-13 106.8 25.6 243 391-644 276-535 (553)
75 KOG1174 Anaphase-promoting com 99.1 6.4E-06 1.4E-10 79.2 37.2 281 374-689 230-519 (564)
76 KOG1127 TPR repeat-containing 99.1 3.8E-06 8.3E-11 89.3 38.3 546 77-642 462-1102(1238)
77 KOG4162 Predicted calmodulin-b 99.1 7.8E-06 1.7E-10 84.9 39.0 407 203-616 317-789 (799)
78 PRK12370 invasion protein regu 99.0 3.1E-08 6.7E-13 107.0 23.0 210 425-643 275-501 (553)
79 KOG0985 Vesicle coat protein c 99.0 1.6E-05 3.5E-10 84.6 41.4 255 359-637 1089-1376(1666)
80 KOG3616 Selective LIM binding 99.0 5.5E-06 1.2E-10 85.0 36.4 253 357-642 744-1022(1636)
81 KOG1840 Kinesin light chain [C 99.0 4.3E-08 9.3E-13 100.7 21.9 235 345-609 199-478 (508)
82 KOG1129 TPR repeat-containing 99.0 2.1E-08 4.5E-13 92.7 17.0 222 348-576 226-456 (478)
83 PF12569 NARP1: NMDA receptor- 99.0 8.6E-06 1.9E-10 85.1 38.3 408 217-639 12-515 (517)
84 KOG3785 Uncharacterized conser 99.0 3E-05 6.5E-10 73.1 36.5 211 426-646 269-492 (557)
85 COG3063 PilF Tfp pilus assembl 99.0 6.8E-08 1.5E-12 85.4 18.0 162 480-646 37-204 (250)
86 PRK11189 lipoprotein NlpI; Pro 99.0 2.3E-07 5.1E-12 91.5 23.4 232 390-630 40-286 (296)
87 KOG3616 Selective LIM binding 98.9 0.00011 2.3E-09 75.9 41.2 192 80-297 738-930 (1636)
88 KOG0624 dsRNA-activated protei 98.9 7.3E-06 1.6E-10 76.8 29.4 196 421-643 165-369 (504)
89 PF12569 NARP1: NMDA receptor- 98.9 1.8E-06 3.9E-11 90.1 28.1 281 353-641 12-331 (517)
90 KOG3617 WD40 and TPR repeat-co 98.9 1.1E-05 2.5E-10 83.9 33.0 239 107-370 724-992 (1416)
91 COG3063 PilF Tfp pilus assembl 98.8 1.5E-06 3.2E-11 77.2 21.6 192 420-616 44-242 (250)
92 KOG0548 Molecular co-chaperone 98.8 2.6E-05 5.6E-10 78.0 32.3 214 415-643 228-454 (539)
93 KOG1127 TPR repeat-containing 98.8 6.6E-05 1.4E-09 80.3 36.5 461 125-607 474-993 (1238)
94 KOG1125 TPR repeat-containing 98.8 4.4E-07 9.6E-12 91.0 18.8 220 423-646 297-529 (579)
95 KOG3617 WD40 and TPR repeat-co 98.7 5.2E-05 1.1E-09 79.2 30.5 164 321-505 811-994 (1416)
96 PRK04841 transcriptional regul 98.7 0.0021 4.5E-08 75.2 48.3 259 126-402 265-557 (903)
97 KOG4340 Uncharacterized conser 98.6 3.1E-05 6.7E-10 71.3 24.1 309 112-436 13-335 (459)
98 KOG0548 Molecular co-chaperone 98.6 0.00011 2.3E-09 73.8 29.4 239 349-627 228-472 (539)
99 PF04733 Coatomer_E: Coatomer 98.6 2.1E-06 4.4E-11 83.5 17.3 155 453-614 108-269 (290)
100 cd05804 StaR_like StaR_like; a 98.6 9.4E-05 2E-09 76.0 30.5 257 385-645 52-337 (355)
101 PF12854 PPR_1: PPR repeat 98.6 5.8E-08 1.3E-12 59.4 3.4 34 269-302 1-34 (34)
102 PF04733 Coatomer_E: Coatomer 98.6 5.9E-06 1.3E-10 80.3 19.1 218 348-576 38-263 (290)
103 TIGR03302 OM_YfiO outer membra 98.6 8.8E-06 1.9E-10 77.9 20.0 179 446-644 32-232 (235)
104 KOG4340 Uncharacterized conser 98.6 2.1E-05 4.5E-10 72.4 20.4 176 461-640 126-335 (459)
105 PRK10370 formate-dependent nit 98.5 9.7E-06 2.1E-10 74.3 18.7 147 485-646 23-175 (198)
106 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 57.7 4.4 33 544-576 2-34 (34)
107 cd05804 StaR_like StaR_like; a 98.5 0.00023 5E-09 73.1 30.6 265 37-304 6-293 (355)
108 PRK15359 type III secretion sy 98.5 3.6E-06 7.7E-11 72.9 13.9 122 499-627 14-138 (144)
109 KOG1128 Uncharacterized conser 98.5 1.4E-05 3.1E-10 82.6 19.6 210 419-648 406-620 (777)
110 PRK15359 type III secretion sy 98.5 7.2E-06 1.6E-10 71.0 15.2 105 534-643 14-120 (144)
111 KOG1070 rRNA processing protei 98.5 2E-05 4.4E-10 87.0 21.1 198 444-646 1455-1665(1710)
112 PRK04841 transcriptional regul 98.5 0.00023 4.9E-09 83.2 31.9 296 350-645 414-761 (903)
113 KOG2053 Mitochondrial inherita 98.4 0.0034 7.3E-08 67.2 36.2 160 414-579 439-609 (932)
114 PRK15363 pathogenicity island 98.4 7.9E-06 1.7E-10 69.3 13.7 100 544-643 28-131 (157)
115 KOG1914 mRNA cleavage and poly 98.4 0.0033 7.3E-08 63.3 37.6 176 392-568 347-529 (656)
116 KOG1914 mRNA cleavage and poly 98.4 0.0036 7.7E-08 63.1 32.7 135 29-169 12-166 (656)
117 PLN02789 farnesyltranstransfer 98.4 0.00013 2.7E-09 72.0 22.8 162 463-628 88-268 (320)
118 KOG1125 TPR repeat-containing 98.3 5.9E-05 1.3E-09 76.2 19.6 236 354-598 294-559 (579)
119 TIGR03302 OM_YfiO outer membra 98.3 4.1E-05 9E-10 73.2 18.3 183 409-612 31-234 (235)
120 KOG1070 rRNA processing protei 98.3 0.00019 4E-09 79.7 24.3 225 311-536 1459-1694(1710)
121 KOG1128 Uncharacterized conser 98.3 2.4E-05 5.1E-10 81.0 16.5 215 342-575 395-613 (777)
122 COG4783 Putative Zn-dependent 98.3 0.0002 4.3E-09 71.2 21.6 140 484-645 312-455 (484)
123 COG5010 TadD Flp pilus assembl 98.3 8.5E-05 1.9E-09 67.8 17.1 127 517-645 70-198 (257)
124 PRK10370 formate-dependent nit 98.3 0.00013 2.8E-09 66.9 18.7 154 454-619 23-182 (198)
125 KOG0624 dsRNA-activated protei 98.2 0.0051 1.1E-07 58.3 29.8 222 30-275 31-256 (504)
126 PLN02789 farnesyltranstransfer 98.2 0.00093 2E-08 66.0 25.2 206 380-593 41-267 (320)
127 PRK15179 Vi polysaccharide bio 98.2 0.00014 3.1E-09 79.2 21.0 137 477-618 85-225 (694)
128 TIGR02552 LcrH_SycD type III s 98.2 2.9E-05 6.3E-10 66.8 12.4 99 545-643 12-113 (135)
129 KOG2053 Mitochondrial inherita 98.2 0.018 3.9E-07 61.9 39.8 215 86-305 21-256 (932)
130 TIGR00756 PPR pentatricopeptid 98.1 4.3E-06 9.4E-11 52.2 4.5 35 141-175 1-35 (35)
131 TIGR00756 PPR pentatricopeptid 98.1 4.7E-06 1E-10 52.0 4.4 35 479-513 1-35 (35)
132 COG5010 TadD Flp pilus assembl 98.1 0.00041 8.9E-09 63.5 17.5 150 485-637 73-224 (257)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00015 3.3E-09 72.9 15.6 127 448-578 170-297 (395)
134 PRK15179 Vi polysaccharide bio 98.0 0.00091 2E-08 73.1 22.6 141 443-588 82-229 (694)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00011 2.3E-09 74.0 14.1 122 516-642 172-295 (395)
136 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.5E-10 49.8 4.4 33 479-511 2-34 (34)
137 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.5E-10 49.7 4.4 33 241-273 2-34 (34)
138 COG4783 Putative Zn-dependent 98.0 0.00087 1.9E-08 66.8 19.3 177 462-644 252-437 (484)
139 KOG0553 TPR repeat-containing 98.0 5.5E-05 1.2E-09 70.4 10.4 90 523-615 91-183 (304)
140 PRK14720 transcript cleavage f 98.0 0.0011 2.5E-08 73.1 21.7 231 345-626 31-268 (906)
141 PRK14720 transcript cleavage f 97.9 0.007 1.5E-07 67.1 26.6 53 349-402 120-175 (906)
142 KOG3081 Vesicle coat complex C 97.9 0.0042 9.2E-08 57.0 20.5 152 455-613 116-274 (299)
143 KOG3081 Vesicle coat complex C 97.8 0.016 3.5E-07 53.3 23.0 139 486-634 116-260 (299)
144 TIGR02552 LcrH_SycD type III s 97.8 0.00094 2E-08 57.3 14.2 112 500-616 5-120 (135)
145 PLN03088 SGT1, suppressor of 97.8 0.00051 1.1E-08 69.6 13.9 97 522-621 11-110 (356)
146 cd00189 TPR Tetratricopeptide 97.8 0.00031 6.6E-09 55.8 10.3 92 552-643 3-96 (100)
147 PF09976 TPR_21: Tetratricopep 97.7 0.001 2.2E-08 57.9 13.9 24 616-639 119-142 (145)
148 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.1E-10 46.0 3.5 31 479-509 1-31 (31)
149 PF09976 TPR_21: Tetratricopep 97.7 0.002 4.4E-08 55.9 15.5 123 481-607 15-144 (145)
150 KOG3060 Uncharacterized conser 97.7 0.015 3.2E-07 53.2 20.5 185 153-340 25-221 (289)
151 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.7E-10 45.9 3.5 31 141-171 1-31 (31)
152 PF12895 Apc3: Anaphase-promot 97.7 4.4E-05 9.6E-10 59.1 4.1 78 562-640 2-83 (84)
153 PF04840 Vps16_C: Vps16, C-ter 97.7 0.071 1.5E-06 52.6 30.8 123 450-592 180-302 (319)
154 PF13414 TPR_11: TPR repeat; P 97.6 0.00013 2.8E-09 54.0 5.9 64 580-643 2-66 (69)
155 PF10037 MRP-S27: Mitochondria 97.6 0.00058 1.3E-08 69.1 12.1 119 205-323 62-186 (429)
156 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00082 1.8E-08 56.2 11.2 92 552-643 5-104 (119)
157 KOG1130 Predicted G-alpha GTPa 97.6 0.00069 1.5E-08 65.5 11.1 255 386-641 27-341 (639)
158 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0016 3.5E-08 54.3 12.6 102 516-617 5-112 (119)
159 KOG2041 WD40 repeat protein [G 97.6 0.066 1.4E-06 55.9 25.3 29 106-134 689-717 (1189)
160 KOG3060 Uncharacterized conser 97.6 0.0081 1.8E-07 54.8 16.8 165 448-615 53-225 (289)
161 PF14559 TPR_19: Tetratricopep 97.6 0.00019 4.1E-09 52.9 5.7 52 592-643 2-53 (68)
162 PRK15331 chaperone protein Sic 97.5 0.0013 2.7E-08 56.4 10.6 100 544-643 31-133 (165)
163 KOG0550 Molecular chaperone (D 97.5 0.0061 1.3E-07 59.5 16.2 155 486-646 177-352 (486)
164 PF13432 TPR_16: Tetratricopep 97.5 0.00023 5E-09 51.8 5.2 58 587-644 3-60 (65)
165 PF05843 Suf: Suppressor of fo 97.5 0.0053 1.1E-07 59.9 16.2 133 479-614 2-140 (280)
166 PRK02603 photosystem I assembl 97.5 0.003 6.5E-08 56.8 13.5 130 477-630 34-166 (172)
167 PRK10153 DNA-binding transcrip 97.5 0.0039 8.4E-08 66.1 16.2 138 477-616 336-488 (517)
168 PF08579 RPM2: Mitochondrial r 97.5 0.0011 2.5E-08 52.1 8.8 79 243-321 28-115 (120)
169 PLN03088 SGT1, suppressor of 97.4 0.0026 5.6E-08 64.5 13.9 104 484-591 8-113 (356)
170 KOG0553 TPR repeat-containing 97.4 0.0013 2.8E-08 61.5 10.4 101 485-590 88-191 (304)
171 PF06239 ECSIT: Evolutionarily 97.4 0.0011 2.3E-08 59.2 9.4 97 229-325 34-153 (228)
172 CHL00033 ycf3 photosystem I as 97.4 0.0094 2E-07 53.3 15.9 80 478-560 35-117 (168)
173 CHL00033 ycf3 photosystem I as 97.4 0.0032 6.9E-08 56.4 12.1 85 35-120 33-117 (168)
174 PRK02603 photosystem I assembl 97.3 0.0025 5.4E-08 57.3 11.3 82 549-630 35-121 (172)
175 PF13431 TPR_17: Tetratricopep 97.3 0.00022 4.8E-09 43.5 2.5 33 604-636 2-34 (34)
176 COG3898 Uncharacterized membra 97.3 0.18 3.8E-06 49.3 22.8 279 348-640 85-388 (531)
177 PRK10153 DNA-binding transcrip 97.3 0.0064 1.4E-07 64.5 14.9 135 508-646 332-484 (517)
178 PF13371 TPR_9: Tetratricopept 97.2 0.00094 2E-08 50.0 6.3 58 589-646 3-60 (73)
179 PF12895 Apc3: Anaphase-promot 97.2 0.00079 1.7E-08 52.0 5.7 80 491-574 2-83 (84)
180 PF13432 TPR_16: Tetratricopep 97.2 0.0013 2.9E-08 47.8 6.2 61 555-615 3-65 (65)
181 cd00189 TPR Tetratricopeptide 97.2 0.0056 1.2E-07 48.2 10.6 90 481-574 3-93 (100)
182 COG4235 Cytochrome c biogenesi 97.1 0.015 3.3E-07 54.9 14.3 102 546-647 152-259 (287)
183 PRK10866 outer membrane biogen 97.1 0.076 1.6E-06 50.5 19.3 172 454-642 39-239 (243)
184 PRK15363 pathogenicity island 97.1 0.013 2.8E-07 50.1 12.0 94 477-575 34-129 (157)
185 PF04840 Vps16_C: Vps16, C-ter 97.1 0.16 3.5E-06 50.2 21.4 110 514-640 178-287 (319)
186 COG4700 Uncharacterized protei 97.1 0.059 1.3E-06 46.8 15.6 130 509-643 85-221 (251)
187 PF05843 Suf: Suppressor of fo 97.1 0.019 4.1E-07 56.1 14.9 126 378-506 3-135 (280)
188 PF08579 RPM2: Mitochondrial r 97.1 0.013 2.9E-07 46.3 10.8 79 482-561 29-116 (120)
189 KOG2280 Vacuolar assembly/sort 96.9 0.74 1.6E-05 49.1 28.6 338 203-574 426-795 (829)
190 KOG0550 Molecular chaperone (D 96.9 0.35 7.5E-06 47.8 21.5 147 422-575 180-347 (486)
191 KOG1538 Uncharacterized conser 96.9 0.063 1.4E-06 55.6 17.1 175 384-581 606-806 (1081)
192 PF14938 SNAP: Soluble NSF att 96.9 0.49 1.1E-05 46.4 27.1 97 480-576 157-264 (282)
193 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0067 1.4E-07 61.0 10.2 66 579-644 73-141 (453)
194 PRK10866 outer membrane biogen 96.8 0.33 7.1E-06 46.2 20.6 65 240-305 32-99 (243)
195 PF10037 MRP-S27: Mitochondria 96.8 0.023 5E-07 57.8 13.3 120 239-358 65-186 (429)
196 PF14938 SNAP: Soluble NSF att 96.8 0.11 2.3E-06 51.0 17.9 114 450-575 97-222 (282)
197 PF14559 TPR_19: Tetratricopep 96.8 0.0073 1.6E-07 44.3 7.5 60 525-587 3-64 (68)
198 PF12688 TPR_5: Tetratrico pep 96.8 0.043 9.4E-07 45.2 12.3 88 484-574 7-100 (120)
199 PF13414 TPR_11: TPR repeat; P 96.7 0.0048 1E-07 45.4 6.1 64 549-612 3-69 (69)
200 PF06239 ECSIT: Evolutionarily 96.7 0.022 4.8E-07 51.1 10.7 98 466-564 33-153 (228)
201 KOG2796 Uncharacterized conser 96.7 0.24 5.1E-06 45.7 17.1 169 349-519 140-325 (366)
202 PRK10803 tol-pal system protei 96.7 0.014 3.1E-07 55.8 10.3 88 524-614 154-250 (263)
203 PF07079 DUF1347: Protein of u 96.6 0.92 2E-05 45.5 38.7 437 119-588 16-532 (549)
204 KOG1538 Uncharacterized conser 96.6 0.28 6E-06 51.1 19.0 109 35-168 554-673 (1081)
205 PF12688 TPR_5: Tetratrico pep 96.6 0.024 5.2E-07 46.7 9.4 90 43-133 7-99 (120)
206 PF13428 TPR_14: Tetratricopep 96.6 0.0046 9.9E-08 40.6 4.3 42 582-623 2-43 (44)
207 COG4700 Uncharacterized protei 96.5 0.41 8.8E-06 41.8 16.6 124 443-571 85-215 (251)
208 COG3898 Uncharacterized membra 96.5 0.96 2.1E-05 44.4 25.9 245 358-609 133-391 (531)
209 KOG0543 FKBP-type peptidyl-pro 96.5 0.024 5.1E-07 55.8 10.3 62 582-643 258-319 (397)
210 PRK10803 tol-pal system protei 96.4 0.055 1.2E-06 51.9 12.1 94 480-575 145-243 (263)
211 KOG2114 Vacuolar assembly/sort 96.3 2.1 4.6E-05 46.5 27.6 150 211-374 370-519 (933)
212 PF13371 TPR_9: Tetratricopept 96.3 0.015 3.2E-07 43.4 6.5 63 557-619 3-67 (73)
213 KOG2796 Uncharacterized conser 96.3 0.3 6.5E-06 45.1 15.4 138 480-617 179-322 (366)
214 PF13525 YfiO: Outer membrane 96.2 0.52 1.1E-05 43.5 17.7 69 36-104 4-72 (203)
215 KOG1130 Predicted G-alpha GTPa 96.2 0.047 1E-06 53.4 10.4 128 413-540 197-342 (639)
216 KOG4555 TPR repeat-containing 96.2 0.044 9.6E-07 44.4 8.4 91 556-646 50-146 (175)
217 PF13281 DUF4071: Domain of un 96.1 0.58 1.3E-05 46.8 17.9 160 452-614 146-338 (374)
218 PF12921 ATP13: Mitochondrial 96.0 0.092 2E-06 43.7 10.4 48 509-556 48-95 (126)
219 KOG3941 Intermediate in Toll s 96.0 0.042 9.1E-07 50.9 8.7 97 228-324 53-172 (406)
220 PF13525 YfiO: Outer membrane 96.0 0.71 1.5E-05 42.6 17.3 58 247-304 12-71 (203)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.0 2 4.4E-05 43.1 31.5 130 480-613 399-534 (660)
222 PF14432 DYW_deaminase: DYW fa 95.9 0.0064 1.4E-07 49.8 2.9 40 651-702 2-41 (116)
223 PF03704 BTAD: Bacterial trans 95.9 0.15 3.2E-06 44.3 11.8 105 524-642 17-123 (146)
224 PF13424 TPR_12: Tetratricopep 95.9 0.012 2.5E-07 44.6 4.1 24 617-640 48-71 (78)
225 KOG2114 Vacuolar assembly/sort 95.7 4.2 9.1E-05 44.4 23.8 83 80-164 403-487 (933)
226 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 2.2 4.9E-05 43.5 19.8 63 444-506 72-140 (453)
227 PF13424 TPR_12: Tetratricopep 95.6 0.02 4.4E-07 43.3 4.5 62 549-610 5-75 (78)
228 PF07079 DUF1347: Protein of u 95.3 3.8 8.2E-05 41.4 36.8 73 569-642 444-522 (549)
229 PRK11906 transcriptional regul 95.3 0.28 6.2E-06 49.8 12.3 141 494-638 274-430 (458)
230 PF12921 ATP13: Mitochondrial 95.2 0.17 3.7E-06 42.1 9.1 51 544-594 47-101 (126)
231 KOG1258 mRNA processing protei 95.2 5.1 0.00011 42.2 33.4 180 446-630 296-490 (577)
232 KOG1920 IkappaB kinase complex 95.2 7.7 0.00017 44.3 24.1 120 461-601 894-1019(1265)
233 KOG0543 FKBP-type peptidyl-pro 95.1 0.24 5.3E-06 48.9 11.0 138 485-644 215-355 (397)
234 COG4235 Cytochrome c biogenesi 95.0 0.31 6.8E-06 46.3 11.1 92 76-168 158-255 (287)
235 PF13512 TPR_18: Tetratricopep 94.9 0.69 1.5E-05 39.0 11.7 62 555-616 16-82 (142)
236 PF13281 DUF4071: Domain of un 94.8 1.3 2.7E-05 44.5 15.2 31 239-269 304-334 (374)
237 PF03704 BTAD: Bacterial trans 94.8 0.31 6.7E-06 42.3 10.1 71 480-551 64-138 (146)
238 KOG1920 IkappaB kinase complex 94.6 11 0.00023 43.2 26.4 93 454-576 959-1053(1265)
239 COG3118 Thioredoxin domain-con 94.5 1.3 2.9E-05 42.1 13.7 118 522-643 143-264 (304)
240 smart00299 CLH Clathrin heavy 94.5 1.5 3.2E-05 37.6 13.5 63 516-591 72-135 (140)
241 COG5107 RNA14 Pre-mRNA 3'-end 94.4 6.4 0.00014 39.8 32.4 145 447-596 397-550 (660)
242 KOG2041 WD40 repeat protein [G 94.4 8.6 0.00019 41.1 29.5 156 222-402 747-904 (1189)
243 KOG1941 Acetylcholine receptor 94.3 3.9 8.4E-05 40.0 16.5 123 453-575 128-272 (518)
244 COG1729 Uncharacterized protei 94.3 0.35 7.5E-06 45.4 9.4 99 515-614 144-248 (262)
245 smart00299 CLH Clathrin heavy 94.3 2.8 6E-05 35.9 14.7 84 243-334 10-93 (140)
246 KOG1941 Acetylcholine receptor 94.1 0.79 1.7E-05 44.5 11.4 46 386-431 16-63 (518)
247 COG4785 NlpI Lipoprotein NlpI, 94.1 3.6 7.7E-05 37.2 14.6 159 478-643 99-265 (297)
248 COG1729 Uncharacterized protei 94.1 0.68 1.5E-05 43.5 10.8 96 480-576 144-242 (262)
249 PF10300 DUF3808: Protein of u 94.1 2.6 5.6E-05 44.6 16.7 117 526-645 246-377 (468)
250 PF13428 TPR_14: Tetratricopep 94.0 0.12 2.5E-06 33.8 4.3 29 615-643 1-29 (44)
251 PF10300 DUF3808: Protein of u 93.9 5.5 0.00012 42.2 18.7 86 455-541 275-375 (468)
252 KOG2066 Vacuolar assembly/sort 93.8 12 0.00026 40.8 24.9 35 561-598 673-707 (846)
253 KOG1258 mRNA processing protei 93.8 10 0.00023 39.9 31.1 122 344-467 296-420 (577)
254 PF07035 Mic1: Colon cancer-as 93.7 4.4 9.6E-05 35.5 15.2 54 260-317 14-67 (167)
255 PRK11906 transcriptional regul 93.7 3.2 7E-05 42.4 15.5 113 463-579 274-403 (458)
256 COG0457 NrfG FOG: TPR repeat [ 93.7 6.1 0.00013 36.9 26.8 193 447-643 59-264 (291)
257 COG4105 ComL DNA uptake lipopr 93.6 6.4 0.00014 36.9 19.3 56 588-643 174-232 (254)
258 KOG3941 Intermediate in Toll s 93.5 0.72 1.6E-05 43.1 9.8 110 465-575 52-185 (406)
259 PF07719 TPR_2: Tetratricopept 93.4 0.24 5.2E-06 29.9 4.8 32 583-614 3-34 (34)
260 PF00515 TPR_1: Tetratricopept 93.4 0.18 4E-06 30.5 4.1 32 582-613 2-33 (34)
261 KOG2280 Vacuolar assembly/sort 93.2 15 0.00031 39.9 31.3 124 143-268 440-574 (829)
262 PRK15331 chaperone protein Sic 92.7 1.2 2.6E-05 38.6 9.3 95 36-134 36-130 (165)
263 KOG4234 TPR repeat-containing 92.7 0.75 1.6E-05 40.7 8.1 90 557-646 103-199 (271)
264 PF09205 DUF1955: Domain of un 92.6 5.1 0.00011 33.1 13.4 140 489-647 13-152 (161)
265 KOG4648 Uncharacterized conser 92.6 0.42 9.2E-06 45.8 7.1 79 559-637 107-187 (536)
266 PF04053 Coatomer_WDAD: Coatom 92.5 1.7 3.7E-05 45.3 12.2 124 488-638 271-396 (443)
267 PRK11619 lytic murein transgly 92.4 21 0.00045 39.6 31.7 113 492-607 255-372 (644)
268 PF04053 Coatomer_WDAD: Coatom 92.2 4.2 9.2E-05 42.4 14.6 156 249-471 270-426 (443)
269 PF09613 HrpB1_HrpK: Bacterial 92.1 5.9 0.00013 34.3 12.7 116 514-634 8-128 (160)
270 COG3118 Thioredoxin domain-con 91.9 12 0.00026 35.8 16.1 28 344-371 235-262 (304)
271 KOG4555 TPR repeat-containing 91.9 4.9 0.00011 33.0 11.2 86 488-574 53-140 (175)
272 COG0457 NrfG FOG: TPR repeat [ 91.7 11 0.00025 35.0 25.6 197 413-613 61-268 (291)
273 PF04097 Nic96: Nup93/Nic96; 91.5 23 0.00051 39.1 20.1 87 383-474 265-354 (613)
274 KOG1586 Protein required for f 91.5 11 0.00024 34.6 14.9 67 559-625 164-241 (288)
275 PF13176 TPR_7: Tetratricopept 91.3 0.3 6.6E-06 30.1 3.2 26 617-642 1-26 (36)
276 PF09205 DUF1955: Domain of un 91.1 7.8 0.00017 32.1 11.8 138 388-545 14-151 (161)
277 PF06552 TOM20_plant: Plant sp 90.7 5.2 0.00011 35.2 11.1 45 598-642 52-100 (186)
278 COG4649 Uncharacterized protei 90.4 4.3 9.4E-05 35.3 10.1 116 120-235 69-193 (221)
279 KOG2610 Uncharacterized conser 90.3 3.3 7.2E-05 40.0 10.4 159 490-651 115-283 (491)
280 PF09613 HrpB1_HrpK: Bacterial 90.3 1.9 4.2E-05 37.2 8.1 56 591-646 20-75 (160)
281 KOG1585 Protein required for f 90.3 15 0.00033 34.0 16.4 21 553-573 154-174 (308)
282 KOG2610 Uncharacterized conser 90.0 8.5 0.00018 37.3 12.8 174 459-637 115-308 (491)
283 COG4105 ComL DNA uptake lipopr 89.9 17 0.00037 34.1 17.6 147 485-644 41-196 (254)
284 PF08631 SPO22: Meiosis protei 89.9 20 0.00044 35.0 25.1 18 591-608 256-273 (278)
285 KOG4648 Uncharacterized conser 89.9 2.2 4.8E-05 41.1 8.9 52 486-539 105-157 (536)
286 PF04184 ST7: ST7 protein; In 89.6 28 0.00061 36.1 21.4 56 484-539 265-321 (539)
287 COG3629 DnrI DNA-binding trans 89.6 2.1 4.6E-05 41.0 8.6 76 447-522 153-236 (280)
288 PF10602 RPN7: 26S proteasome 89.5 9.5 0.00021 34.2 12.5 94 480-575 38-139 (177)
289 PF02259 FAT: FAT domain; Int 89.4 26 0.00057 35.5 20.1 149 477-628 145-305 (352)
290 PF13181 TPR_8: Tetratricopept 89.4 0.72 1.6E-05 27.8 3.8 31 583-613 3-33 (34)
291 TIGR02561 HrpB1_HrpK type III 89.4 2.4 5.3E-05 35.9 7.8 56 592-647 21-76 (153)
292 PF13512 TPR_18: Tetratricopep 89.0 12 0.00026 31.7 11.7 88 34-121 7-94 (142)
293 PF13176 TPR_7: Tetratricopept 88.8 0.98 2.1E-05 27.8 4.1 26 480-505 1-26 (36)
294 PF10602 RPN7: 26S proteasome 88.7 3.2 7E-05 37.1 8.9 68 36-103 35-102 (177)
295 PF04184 ST7: ST7 protein; In 88.6 17 0.00038 37.6 14.6 54 587-640 265-320 (539)
296 PRK10941 hypothetical protein; 88.3 3.4 7.4E-05 39.7 9.3 60 584-643 184-243 (269)
297 PF13431 TPR_17: Tetratricopep 88.1 0.69 1.5E-05 28.1 2.9 25 545-569 8-33 (34)
298 PF07035 Mic1: Colon cancer-as 87.8 18 0.0004 31.8 13.1 28 164-191 18-45 (167)
299 PF13170 DUF4003: Protein of u 87.5 13 0.00028 36.5 12.9 134 392-557 78-225 (297)
300 KOG4570 Uncharacterized conser 87.3 5.7 0.00012 38.1 9.6 102 203-305 58-165 (418)
301 PF14853 Fis1_TPR_C: Fis1 C-te 86.8 3.7 8E-05 28.0 6.1 51 617-693 3-53 (53)
302 PF02259 FAT: FAT domain; Int 86.5 28 0.00062 35.3 15.8 65 579-643 144-212 (352)
303 PRK09687 putative lyase; Provi 85.8 36 0.00079 33.2 27.0 58 345-402 37-98 (280)
304 PF07721 TPR_4: Tetratricopept 85.5 1.3 2.8E-05 24.8 3.0 24 616-639 2-25 (26)
305 KOG1585 Protein required for f 85.5 31 0.00068 32.1 17.7 145 446-604 90-250 (308)
306 KOG4279 Serine/threonine prote 85.5 19 0.00042 39.0 13.3 184 377-614 202-399 (1226)
307 PF00515 TPR_1: Tetratricopept 85.2 1.9 4.1E-05 25.9 3.9 27 480-506 3-29 (34)
308 PF07719 TPR_2: Tetratricopept 85.1 1.1 2.4E-05 26.8 2.8 29 616-644 2-30 (34)
309 TIGR02508 type_III_yscG type I 84.9 13 0.00029 29.0 8.8 78 191-270 21-98 (115)
310 KOG4570 Uncharacterized conser 84.8 9.1 0.0002 36.8 9.6 96 443-542 60-164 (418)
311 TIGR02561 HrpB1_HrpK type III 83.9 24 0.00051 30.2 10.8 70 524-596 21-93 (153)
312 PF13170 DUF4003: Protein of u 83.2 45 0.00097 32.8 14.3 26 157-182 79-104 (297)
313 KOG1464 COP9 signalosome, subu 83.1 42 0.00091 31.7 16.6 232 358-594 40-317 (440)
314 PF02284 COX5A: Cytochrome c o 82.3 11 0.00023 29.7 7.5 60 496-557 28-87 (108)
315 KOG3364 Membrane protein invol 82.3 17 0.00037 30.3 9.0 69 546-614 29-104 (149)
316 KOG2066 Vacuolar assembly/sort 82.2 86 0.0019 34.6 24.5 99 116-221 363-467 (846)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 81.6 13 0.00029 28.8 7.6 63 493-557 22-84 (103)
318 PF08631 SPO22: Meiosis protei 81.5 55 0.0012 31.9 23.3 98 211-309 86-191 (278)
319 PF06552 TOM20_plant: Plant sp 81.4 17 0.00037 32.1 9.3 41 523-563 38-83 (186)
320 PF14853 Fis1_TPR_C: Fis1 C-te 81.3 2.7 6E-05 28.6 3.7 31 586-616 6-36 (53)
321 KOG0890 Protein kinase of the 81.0 1.7E+02 0.0037 37.2 29.5 64 581-646 1670-1733(2382)
322 COG3629 DnrI DNA-binding trans 80.7 8.2 0.00018 37.1 8.0 61 550-610 154-216 (280)
323 COG2976 Uncharacterized protei 80.6 43 0.00094 30.1 13.5 114 496-614 70-192 (207)
324 PF00637 Clathrin: Region in C 80.6 1.6 3.4E-05 37.6 3.0 86 79-167 12-97 (143)
325 PF13181 TPR_8: Tetratricopept 80.5 3.2 6.8E-05 24.8 3.6 28 616-643 2-29 (34)
326 PF13374 TPR_10: Tetratricopep 80.3 3 6.5E-05 26.3 3.6 28 616-643 3-30 (42)
327 PF02284 COX5A: Cytochrome c o 80.3 12 0.00025 29.5 7.0 49 574-622 38-86 (108)
328 TIGR02508 type_III_yscG type I 80.3 26 0.00057 27.4 9.5 85 327-415 22-106 (115)
329 PF04097 Nic96: Nup93/Nic96; 80.2 1E+02 0.0022 34.2 26.4 218 141-372 112-354 (613)
330 PF10345 Cohesin_load: Cohesin 80.1 1E+02 0.0022 34.2 32.7 172 28-200 50-250 (608)
331 cd00923 Cyt_c_Oxidase_Va Cytoc 79.7 12 0.00027 29.0 6.9 48 574-621 35-82 (103)
332 PRK09687 putative lyase; Provi 79.6 64 0.0014 31.5 27.6 73 446-523 205-277 (280)
333 PF10345 Cohesin_load: Cohesin 79.6 1.1E+02 0.0023 34.1 34.4 23 620-642 582-604 (608)
334 PF13374 TPR_10: Tetratricopep 78.5 4.8 0.0001 25.4 4.2 28 479-506 3-30 (42)
335 PF00637 Clathrin: Region in C 77.4 1.6 3.4E-05 37.6 2.1 52 419-471 15-66 (143)
336 PF13174 TPR_6: Tetratricopept 77.0 2.9 6.3E-05 24.7 2.6 28 617-644 2-29 (33)
337 PF10579 Rapsyn_N: Rapsyn N-te 75.3 7.1 0.00015 29.0 4.5 47 525-571 18-65 (80)
338 KOG1308 Hsp70-interacting prot 74.8 2.2 4.8E-05 41.4 2.4 87 561-647 126-214 (377)
339 KOG0276 Vesicle coat complex C 74.7 49 0.0011 35.2 11.8 148 459-640 598-746 (794)
340 KOG0276 Vesicle coat complex C 74.4 31 0.00068 36.5 10.4 148 121-300 598-746 (794)
341 PF07721 TPR_4: Tetratricopept 74.4 6 0.00013 22.1 3.2 22 552-573 4-25 (26)
342 PF13174 TPR_6: Tetratricopept 74.3 6.8 0.00015 23.0 3.8 28 586-613 5-32 (33)
343 KOG1550 Extracellular protein 74.1 71 0.0015 34.9 14.0 150 392-542 228-393 (552)
344 PF11207 DUF2989: Protein of u 73.9 19 0.00041 32.6 7.7 75 560-635 118-198 (203)
345 PF11207 DUF2989: Protein of u 73.3 33 0.00072 31.1 9.1 73 495-568 123-197 (203)
346 smart00028 TPR Tetratricopepti 73.2 8.1 0.00018 21.8 4.1 27 586-612 6-32 (34)
347 PRK15180 Vi polysaccharide bio 72.3 30 0.00064 35.5 9.4 119 491-613 302-423 (831)
348 KOG0376 Serine-threonine phosp 71.8 7.1 0.00015 40.0 5.2 86 557-642 12-99 (476)
349 PF04910 Tcf25: Transcriptiona 71.5 64 0.0014 32.8 12.0 64 580-643 99-167 (360)
350 COG4455 ImpE Protein of avirul 71.3 81 0.0018 29.0 10.9 61 554-614 6-68 (273)
351 COG4649 Uncharacterized protei 71.3 73 0.0016 28.1 13.9 54 489-542 143-196 (221)
352 KOG1550 Extracellular protein 71.2 1.6E+02 0.0035 32.1 22.5 211 426-644 308-538 (552)
353 KOG0991 Replication factor C, 70.6 60 0.0013 30.1 10.1 142 33-186 126-283 (333)
354 COG3947 Response regulator con 70.0 1.1E+02 0.0024 29.6 15.1 58 585-642 283-340 (361)
355 PRK15180 Vi polysaccharide bio 69.8 52 0.0011 33.9 10.5 140 524-667 300-441 (831)
356 KOG4642 Chaperone-dependent E3 69.6 13 0.00027 34.5 5.7 50 592-641 55-104 (284)
357 COG2909 MalT ATP-dependent tra 69.5 2E+02 0.0044 32.5 23.4 52 490-541 470-525 (894)
358 KOG3364 Membrane protein invol 68.6 59 0.0013 27.3 8.8 46 528-575 50-97 (149)
359 PF07163 Pex26: Pex26 protein; 68.6 58 0.0013 31.1 9.9 88 485-575 90-184 (309)
360 PF13934 ELYS: Nuclear pore co 68.1 80 0.0017 29.6 11.1 96 490-594 90-185 (226)
361 PF09477 Type_III_YscG: Bacter 68.0 61 0.0013 25.9 8.8 78 190-270 21-99 (116)
362 KOG4234 TPR repeat-containing 66.8 70 0.0015 28.9 9.4 26 590-615 177-202 (271)
363 KOG1586 Protein required for f 65.7 1.2E+02 0.0025 28.4 14.7 90 525-614 85-187 (288)
364 PF14561 TPR_20: Tetratricopep 64.8 20 0.00044 27.7 5.4 43 601-643 8-50 (90)
365 PRK10941 hypothetical protein; 63.0 61 0.0013 31.3 9.4 66 552-617 184-251 (269)
366 PHA02875 ankyrin repeat protei 62.8 2E+02 0.0043 30.0 15.9 116 48-175 10-130 (413)
367 PF04190 DUF410: Protein of un 62.7 1.5E+02 0.0033 28.6 17.5 158 121-304 2-170 (260)
368 PF10366 Vps39_1: Vacuolar sor 62.5 46 0.001 26.9 7.2 29 615-643 39-67 (108)
369 PF15469 Sec5: Exocyst complex 62.4 1.2E+02 0.0025 27.4 10.8 119 481-621 60-179 (182)
370 KOG2063 Vacuolar assembly/sort 61.7 3E+02 0.0065 31.7 23.0 131 378-524 506-637 (877)
371 PF07575 Nucleopor_Nup85: Nup8 61.1 2.2E+02 0.0049 31.2 14.7 21 143-164 152-172 (566)
372 COG4785 NlpI Lipoprotein NlpI, 60.9 1.4E+02 0.003 27.5 15.3 61 345-405 99-162 (297)
373 KOG4642 Chaperone-dependent E3 60.5 1.1E+02 0.0025 28.6 9.9 83 456-540 19-105 (284)
374 COG5159 RPN6 26S proteasome re 58.7 1.8E+02 0.0038 28.1 14.0 52 485-536 10-68 (421)
375 COG2976 Uncharacterized protei 58.5 1.4E+02 0.0031 27.0 12.4 55 215-269 132-188 (207)
376 PRK12798 chemotaxis protein; R 58.2 2.3E+02 0.0049 29.2 21.0 152 460-613 125-289 (421)
377 PF09986 DUF2225: Uncharacteri 57.4 55 0.0012 30.4 7.8 62 583-644 120-194 (214)
378 PF08311 Mad3_BUB1_I: Mad3/BUB 57.1 1.1E+02 0.0023 25.6 8.8 43 531-574 81-124 (126)
379 PF11846 DUF3366: Domain of un 56.8 46 0.00099 30.3 7.3 30 546-575 141-170 (193)
380 PF09477 Type_III_YscG: Bacter 56.4 1E+02 0.0022 24.7 9.6 85 326-414 22-106 (116)
381 PF04910 Tcf25: Transcriptiona 56.1 2.4E+02 0.0052 28.8 17.6 52 521-575 111-165 (360)
382 TIGR03504 FimV_Cterm FimV C-te 55.8 27 0.00059 22.7 3.9 24 484-507 5-28 (44)
383 KOG0551 Hsp90 co-chaperone CNS 55.7 64 0.0014 31.7 7.9 91 550-640 82-178 (390)
384 PF09670 Cas_Cas02710: CRISPR- 55.5 2.2E+02 0.0049 29.2 12.6 55 487-542 140-198 (379)
385 COG4976 Predicted methyltransf 55.3 18 0.0004 33.2 4.1 57 558-614 4-62 (287)
386 KOG2396 HAT (Half-A-TPR) repea 55.1 2.8E+02 0.006 29.2 30.9 103 467-572 448-553 (568)
387 KOG0545 Aryl-hydrocarbon recep 55.0 1.1E+02 0.0024 28.7 8.9 55 589-643 238-292 (329)
388 PF04190 DUF410: Protein of un 54.9 2E+02 0.0044 27.7 18.7 83 445-542 88-170 (260)
389 PF07720 TPR_3: Tetratricopept 54.7 49 0.0011 20.4 4.7 30 584-613 4-35 (36)
390 PF10366 Vps39_1: Vacuolar sor 54.3 94 0.002 25.1 7.7 27 142-168 41-67 (108)
391 PF07163 Pex26: Pex26 protein; 54.1 1.2E+02 0.0026 29.2 9.2 87 383-470 90-181 (309)
392 KOG3807 Predicted membrane pro 53.7 1.3E+02 0.0029 29.4 9.7 159 424-615 229-396 (556)
393 KOG4077 Cytochrome c oxidase, 52.9 97 0.0021 25.6 7.3 59 496-556 67-125 (149)
394 KOG0686 COP9 signalosome, subu 52.4 2.8E+02 0.006 28.4 14.1 90 210-301 151-255 (466)
395 TIGR03504 FimV_Cterm FimV C-te 52.1 37 0.0008 22.1 4.1 24 382-405 5-28 (44)
396 smart00386 HAT HAT (Half-A-TPR 51.0 32 0.0007 19.7 3.7 29 595-623 1-29 (33)
397 KOG4077 Cytochrome c oxidase, 50.1 69 0.0015 26.4 6.1 55 161-215 70-124 (149)
398 KOG2063 Vacuolar assembly/sort 49.9 4.6E+02 0.01 30.3 16.4 25 40-64 310-334 (877)
399 PF14863 Alkyl_sulf_dimr: Alky 48.8 77 0.0017 27.0 6.7 66 565-633 57-122 (141)
400 PF13929 mRNA_stabil: mRNA sta 48.7 2.7E+02 0.0058 27.1 15.3 57 541-597 194-254 (292)
401 PF10579 Rapsyn_N: Rapsyn N-te 48.6 59 0.0013 24.3 5.1 53 42-95 12-64 (80)
402 PRK09169 hypothetical protein; 48.3 7.3E+02 0.016 32.1 45.0 363 275-637 246-688 (2316)
403 PF13762 MNE1: Mitochondrial s 48.2 1.8E+02 0.0039 25.0 10.1 48 276-323 80-128 (145)
404 PRK13342 recombination factor 47.2 3.6E+02 0.0077 28.2 16.1 47 379-425 230-279 (413)
405 PRK13800 putative oxidoreducta 47.1 5.4E+02 0.012 30.3 26.2 139 446-596 697-836 (897)
406 KOG4507 Uncharacterized conser 46.5 79 0.0017 33.6 7.4 100 524-626 618-721 (886)
407 PF11768 DUF3312: Protein of u 45.5 2.4E+02 0.0051 30.2 10.8 24 451-474 412-435 (545)
408 PF13762 MNE1: Mitochondrial s 45.4 2E+02 0.0043 24.7 10.5 50 375-424 78-128 (145)
409 COG0735 Fur Fe2+/Zn2+ uptake r 44.3 95 0.0021 26.7 6.7 62 262-324 8-69 (145)
410 PF12862 Apc5: Anaphase-promot 44.1 78 0.0017 24.6 5.8 52 592-643 9-69 (94)
411 cd08326 CARD_CASP9 Caspase act 44.1 75 0.0016 24.2 5.4 62 94-159 19-80 (84)
412 PF11846 DUF3366: Domain of un 43.5 86 0.0019 28.5 6.9 36 577-612 140-175 (193)
413 COG4455 ImpE Protein of avirul 43.1 2.8E+02 0.006 25.8 12.3 146 480-637 3-163 (273)
414 PF11848 DUF3368: Domain of un 42.9 95 0.0021 20.6 5.1 33 489-521 13-45 (48)
415 PF11663 Toxin_YhaV: Toxin wit 42.5 28 0.00061 29.0 3.0 31 252-284 107-137 (140)
416 COG2912 Uncharacterized conser 42.5 1.6E+02 0.0035 28.2 8.4 53 589-641 189-241 (269)
417 COG4976 Predicted methyltransf 41.6 52 0.0011 30.4 4.8 56 591-646 5-60 (287)
418 PF11848 DUF3368: Domain of un 41.2 1E+02 0.0022 20.4 5.1 30 287-316 14-43 (48)
419 KOG4521 Nuclear pore complex, 41.1 6.4E+02 0.014 29.9 13.7 23 452-474 925-947 (1480)
420 KOG1498 26S proteasome regulat 41.0 4.1E+02 0.0088 27.1 16.8 127 553-682 135-276 (439)
421 COG1747 Uncharacterized N-term 40.9 4.7E+02 0.01 27.8 21.8 160 408-575 63-231 (711)
422 COG5108 RPO41 Mitochondrial DN 40.7 1.3E+02 0.0029 32.5 8.1 73 518-590 33-112 (1117)
423 PF08311 Mad3_BUB1_I: Mad3/BUB 40.6 1.8E+02 0.004 24.2 7.7 44 429-472 81-124 (126)
424 cd08819 CARD_MDA5_2 Caspase ac 40.3 1.7E+02 0.0037 22.5 7.0 39 357-396 48-86 (88)
425 COG2178 Predicted RNA-binding 40.1 2.7E+02 0.0059 25.2 8.7 51 456-506 38-97 (204)
426 PF09670 Cas_Cas02710: CRISPR- 39.7 3.6E+02 0.0079 27.7 11.3 53 522-576 140-196 (379)
427 PF14669 Asp_Glu_race_2: Putat 39.3 2.9E+02 0.0064 25.0 13.0 56 416-471 137-205 (233)
428 cd08819 CARD_MDA5_2 Caspase ac 39.0 1.8E+02 0.0039 22.4 6.8 38 459-497 48-85 (88)
429 PRK11619 lytic murein transgly 39.0 6E+02 0.013 28.4 40.7 399 206-646 96-507 (644)
430 PRK10564 maltose regulon perip 38.7 59 0.0013 31.6 4.9 42 479-520 258-299 (303)
431 TIGR02710 CRISPR-associated pr 38.6 4.5E+02 0.0098 26.9 12.0 26 487-512 139-164 (380)
432 PF14689 SPOB_a: Sensor_kinase 37.1 69 0.0015 22.7 4.0 22 554-575 28-49 (62)
433 PF11663 Toxin_YhaV: Toxin wit 37.1 35 0.00075 28.5 2.7 33 48-84 106-138 (140)
434 PRK10564 maltose regulon perip 36.9 63 0.0014 31.4 4.8 28 280-307 262-289 (303)
435 KOG0991 Replication factor C, 36.5 3.7E+02 0.008 25.3 12.9 121 450-575 133-264 (333)
436 PF10475 DUF2450: Protein of u 36.1 4.3E+02 0.0094 25.9 12.1 25 342-366 194-218 (291)
437 PF10255 Paf67: RNA polymerase 36.0 1.6E+02 0.0034 30.4 7.8 57 210-266 123-190 (404)
438 KOG0292 Vesicle coat complex C 35.2 39 0.00084 37.6 3.5 77 518-610 625-701 (1202)
439 KOG4507 Uncharacterized conser 33.8 4.3E+02 0.0094 28.5 10.3 145 408-558 568-719 (886)
440 PF12968 DUF3856: Domain of Un 32.9 1.9E+02 0.0042 23.8 6.1 22 620-641 105-126 (144)
441 cd08332 CARD_CASP2 Caspase act 32.7 1.8E+02 0.0038 22.6 5.9 60 94-157 23-82 (90)
442 COG3947 Response regulator con 32.6 4.8E+02 0.01 25.5 15.7 42 384-426 287-328 (361)
443 PF11768 DUF3312: Protein of u 32.4 6.4E+02 0.014 27.2 11.5 120 213-339 412-536 (545)
444 PF13929 mRNA_stabil: mRNA sta 31.9 4.9E+02 0.011 25.4 20.4 59 444-502 199-262 (292)
445 PF14689 SPOB_a: Sensor_kinase 31.8 71 0.0015 22.6 3.4 26 481-506 26-51 (62)
446 PF06957 COPI_C: Coatomer (COP 31.5 1.7E+02 0.0038 30.3 7.3 109 488-614 214-333 (422)
447 KOG2908 26S proteasome regulat 30.8 4E+02 0.0086 26.6 9.0 47 88-134 89-140 (380)
448 KOG0687 26S proteasome regulat 30.5 5.5E+02 0.012 25.5 13.2 94 447-542 104-210 (393)
449 KOG0687 26S proteasome regulat 30.5 5.5E+02 0.012 25.5 13.7 96 479-575 105-207 (393)
450 KOG0890 Protein kinase of the 30.5 1.3E+03 0.029 30.0 37.5 155 216-382 1390-1552(2382)
451 KOG0686 COP9 signalosome, subu 30.4 6.2E+02 0.013 26.0 16.2 160 448-642 151-331 (466)
452 PHA03100 ankyrin repeat protei 30.4 6.9E+02 0.015 26.6 17.0 14 121-134 117-130 (480)
453 TIGR02414 pepN_proteo aminopep 30.3 9.4E+02 0.02 28.1 15.1 152 482-637 676-836 (863)
454 COG0790 FOG: TPR repeat, SEL1 29.4 5.4E+02 0.012 25.0 18.2 110 463-576 93-218 (292)
455 PF11838 ERAP1_C: ERAP1-like C 29.4 5.7E+02 0.012 25.3 18.4 81 427-507 146-230 (324)
456 KOG3824 Huntingtin interacting 29.3 90 0.002 30.2 4.5 62 559-620 126-189 (472)
457 PRK14015 pepN aminopeptidase N 29.0 9.9E+02 0.022 28.0 14.9 152 482-637 686-846 (875)
458 KOG1524 WD40 repeat-containing 28.8 3.1E+02 0.0067 29.0 8.3 86 550-638 574-667 (737)
459 TIGR01503 MthylAspMut_E methyl 28.8 3.2E+02 0.0069 28.6 8.4 14 224-237 29-42 (480)
460 KOG4567 GTPase-activating prot 27.9 5.5E+02 0.012 25.3 9.2 92 396-493 263-364 (370)
461 PF12069 DUF3549: Protein of u 27.0 6.6E+02 0.014 25.3 13.2 91 349-441 170-260 (340)
462 PF11817 Foie-gras_1: Foie gra 26.6 2.4E+02 0.0052 26.9 7.1 13 526-538 191-203 (247)
463 KOG0376 Serine-threonine phosp 26.4 1.5E+02 0.0032 30.9 5.7 103 487-594 13-118 (476)
464 cd08326 CARD_CASP9 Caspase act 26.1 3E+02 0.0065 21.0 6.8 39 357-395 42-80 (84)
465 PF08967 DUF1884: Domain of un 25.6 81 0.0017 23.6 2.7 27 674-700 7-33 (85)
466 PF10516 SHNi-TPR: SHNi-TPR; 25.3 1.6E+02 0.0034 18.5 3.6 27 616-642 2-28 (38)
467 cd00280 TRFH Telomeric Repeat 25.3 4.5E+02 0.0098 23.7 7.6 19 522-540 120-138 (200)
468 PHA02875 ankyrin repeat protei 25.1 7.8E+02 0.017 25.5 18.4 200 95-310 16-230 (413)
469 COG5108 RPO41 Mitochondrial DN 25.1 6.1E+02 0.013 27.9 9.9 86 214-302 33-130 (1117)
470 PF11123 DNA_Packaging_2: DNA 25.0 1.8E+02 0.004 21.3 4.3 32 191-222 13-44 (82)
471 PF07064 RIC1: RIC1; InterPro 24.9 6.3E+02 0.014 24.3 14.1 42 38-83 83-124 (258)
472 cd00280 TRFH Telomeric Repeat 24.9 4.2E+02 0.009 23.9 7.3 41 555-595 117-157 (200)
473 PF02847 MA3: MA3 domain; Int 24.8 2.1E+02 0.0046 23.0 5.6 20 282-301 9-28 (113)
474 cd07229 Pat_TGL3_like Triacylg 24.8 6.4E+02 0.014 26.1 9.9 39 262-300 101-142 (391)
475 smart00777 Mad3_BUB1_I Mad3/BU 24.8 4.1E+02 0.0089 22.1 8.9 41 532-573 82-123 (125)
476 KOG1464 COP9 signalosome, subu 24.1 6.5E+02 0.014 24.2 21.0 88 381-468 150-252 (440)
477 PF14561 TPR_20: Tetratricopep 23.7 3.5E+02 0.0075 20.9 7.9 62 580-641 21-85 (90)
478 PRK11639 zinc uptake transcrip 23.6 3.8E+02 0.0082 23.7 7.3 59 267-326 18-76 (169)
479 PF08424 NRDE-2: NRDE-2, neces 23.4 7.5E+02 0.016 24.7 13.7 132 375-509 18-185 (321)
480 COG5191 Uncharacterized conser 23.3 1.6E+02 0.0035 28.7 4.9 42 580-621 140-182 (435)
481 smart00638 LPD_N Lipoprotein N 23.0 1E+03 0.022 26.1 23.3 267 226-523 296-573 (574)
482 PRK13342 recombination factor 22.9 8.8E+02 0.019 25.3 16.7 46 481-526 230-278 (413)
483 PF12796 Ank_2: Ankyrin repeat 22.7 3.3E+02 0.0072 20.4 6.9 73 96-175 12-87 (89)
484 PF04090 RNA_pol_I_TF: RNA pol 22.6 6E+02 0.013 23.3 8.4 89 583-671 43-132 (199)
485 KOG2300 Uncharacterized conser 22.4 9.4E+02 0.02 25.5 34.2 121 285-405 333-474 (629)
486 KOG0545 Aryl-hydrocarbon recep 22.4 6.8E+02 0.015 23.8 8.9 44 21-64 162-205 (329)
487 PF11817 Foie-gras_1: Foie gra 22.4 2.7E+02 0.0058 26.6 6.6 25 551-575 180-204 (247)
488 PF11838 ERAP1_C: ERAP1-like C 22.3 7.6E+02 0.017 24.4 18.1 82 529-610 146-230 (324)
489 PRK11639 zinc uptake transcrip 22.2 3.3E+02 0.0072 24.1 6.6 45 145-189 30-74 (169)
490 PF04034 DUF367: Domain of unk 21.8 4.8E+02 0.01 21.8 7.5 50 551-600 68-118 (127)
491 KOG2396 HAT (Half-A-TPR) repea 21.8 9.9E+02 0.021 25.5 38.3 234 397-639 303-554 (568)
492 PF10475 DUF2450: Protein of u 21.7 5E+02 0.011 25.5 8.4 50 353-404 106-155 (291)
493 PF12796 Ank_2: Ankyrin repeat 21.7 3.5E+02 0.0076 20.2 6.2 13 221-233 6-18 (89)
494 TIGR02270 conserved hypothetic 21.6 9.4E+02 0.02 25.1 24.4 237 40-301 41-278 (410)
495 PF12554 MOZART1: Mitotic-spin 21.3 2.3E+02 0.005 18.9 3.9 30 42-71 9-38 (48)
496 COG0735 Fur Fe2+/Zn2+ uptake r 21.3 5E+02 0.011 22.3 7.3 43 381-423 25-67 (145)
497 PF12968 DUF3856: Domain of Un 20.8 4.9E+02 0.011 21.6 9.2 60 551-610 57-129 (144)
498 TIGR02328 conserved hypothetic 20.3 1.1E+02 0.0025 24.5 2.8 25 676-700 49-73 (120)
499 PF09454 Vps23_core: Vps23 cor 20.3 2.4E+02 0.0052 20.3 4.2 49 476-525 6-54 (65)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8e-107 Score=918.87 Aligned_cols=671 Identities=34% Similarity=0.617 Sum_probs=651.0
Q ss_pred cchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchh
Q 005174 33 EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112 (710)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (710)
+.++..+++.++.+|++.|++++|+.+|+.|.+.|+.|+.. +|..++.+|.+.+.+..+.++|..+++.+..++..++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDED--AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChh--HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 56777889999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCch
Q 005174 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192 (710)
Q Consensus 113 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (710)
|+|+.+|+++|+++.|+++|++|+++|+++||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++.
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005174 193 FGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271 (710)
Q Consensus 193 ~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 271 (710)
.++++|..+. .|+.||+.++|+|+.+|+++|+++.|.++|++|+++|.++||++|.+|++.|+.++|+++|.+|...|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCc------------------------------------------------------------------eehHHHHHHHH
Q 005174 272 EVN------------------------------------------------------------------VITWNTIAGGC 285 (710)
Q Consensus 272 ~p~------------------------------------------------------------------~~~~~~li~~~ 285 (710)
.|| ..+||++|.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 654 56777778888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005174 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365 (710)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 365 (710)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.++..++++|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC
Q 005174 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445 (710)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (710)
++|++|.++|+++||++|.+|+++|+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.++|..+.+.| +.+
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g-~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG-IGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC-CCc
Confidence 999999999999999999999999999999999999986 699999999999999999999999999999999999 999
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 525 (710)
+..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 605 (710)
.|++++|.++|+.|.+.+|+.|+..+|++|+++|+++|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999977899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHH
Q 005174 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685 (710)
Q Consensus 606 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~ 685 (710)
++++++|+++..|..|+++|++.|+|++|.++++.|+++|++|.||+|||++++++|.|..+|.+||+.++||.+|++|.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcccCCccccH--HHHHHh
Q 005174 686 ELMKDAGYVVKEEFCSE--EEIVEE 708 (710)
Q Consensus 686 ~~~~~~g~~~~~~~~~~--~~~~~~ 708 (710)
.+|++.||+|+++++.+ ||-+|+
T Consensus 762 ~~~~~~g~~~~~~~~~~~~~~~k~~ 786 (857)
T PLN03077 762 EKMKASGLAGSESSSMDEIEVSKDD 786 (857)
T ss_pred HHHHhCCcCCCcchhccccHHHHHH
Confidence 99999999999997763 333444
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-86 Score=733.50 Aligned_cols=530 Identities=34% Similarity=0.569 Sum_probs=502.0
Q ss_pred CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHHH
Q 005174 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNA 214 (710)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~~ 214 (710)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+.+.+++..+. .|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577799999999999999999999999998764 78999999999999999999999999999999 999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHH
Q 005174 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294 (710)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 294 (710)
|+.+|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll------------ 231 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML------------ 231 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH------------
Confidence 99999999999999999999999999999999999999999988888888888777777665555554
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 005174 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374 (710)
Q Consensus 295 ~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (710)
.+|+..|..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|.++
T Consensus 232 -----------------------~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 232 -----------------------RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred -----------------------HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 455555555666666666666677777778899999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHh
Q 005174 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454 (710)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 454 (710)
|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.++.|.++|..+.+.| ++++..++++|+
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li 367 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALV 367 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHH
Q 005174 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534 (710)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 534 (710)
++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 535 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
+|+.|.+.+|+.|+..+|++|+++|+++|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++.+++|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHHcCcc
Q 005174 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~ 694 (710)
..+|..|+++|++.|+|++|.++++.|++.|++|.||+|||++++++|.|+.+|.+||+..+||.+|++|..+|++.||+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccH
Q 005174 695 VKEEFCSE 702 (710)
Q Consensus 695 ~~~~~~~~ 702 (710)
|++.++.+
T Consensus 608 ~~~~~~~~ 615 (697)
T PLN03081 608 AEENELLP 615 (697)
T ss_pred CCcchhhc
Confidence 99998754
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-77 Score=675.00 Aligned_cols=612 Identities=22% Similarity=0.305 Sum_probs=533.7
Q ss_pred CCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhC----CCCCCccHH
Q 005174 69 SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS----NIRYPLPWN 144 (710)
Q Consensus 69 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 144 (710)
.|+.. +++.++.++.+.|.+++|..++..+.+.|++|+..++..++..|.+.+.++.|..+++.+ ..+++..+|
T Consensus 48 ~~~~~--~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTH--DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchh--hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 45555 899999999999999999999999999999999999999999999999999999999864 356778899
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcC
Q 005174 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFG 223 (710)
Q Consensus 145 ~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g 223 (710)
++|..|++.|+++.|+++|++|. .||..+|+.++.+|++.|++++|..+++.|. .|+.||..+|+.++.++++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999997 4799999999999999999999999999999 999999999999999999999
Q ss_pred CHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHH
Q 005174 224 QVDVARRLFDKML----ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299 (710)
Q Consensus 224 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (710)
++..+.+++..|. .+|+.+||++|.+|++.|++++|.++|++| ..||..+||+||.+|++.|++++|+++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999884 579999999999999999999999999999 56899999999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 005174 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379 (710)
Q Consensus 300 ~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (710)
+|...|+.||..||+.++.+|+..|+++.+.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++|
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~ 357 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh
Q 005174 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (710)
|++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.| +.++..++|+|+++|++
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHH
Q 005174 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 539 (710)
+|++++|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.. +++||..||+.+|.+|++.|+++.+.+++..+
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 59999999999999999999999999999998
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh--CCC----
Q 005174 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET--RPE---- 613 (710)
Q Consensus 540 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~---- 613 (710)
.+. |+.|+..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.+.++++.+. .|+
T Consensus 516 ~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 516 LRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 876 77766666666666666555555555555554 345555555555555555555554444444332 222
Q ss_pred -------------------------------CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEE-------
Q 005174 614 -------------------------------NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV------- 655 (710)
Q Consensus 614 -------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------- 655 (710)
+..+|.+++++|+++|++++|.++++.|. +++. ...|-
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd-~~~~~aLl~ac~ 668 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPD-PAVWGALLNACR 668 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCC-HHHHHHHHHHHH
Confidence 34678888888888888888888877773 2211 12231
Q ss_pred -----EECCeEEEEeeCCCCCcchhhHHHHHH-------------HHHHHHHHcCcccCCcccc
Q 005174 656 -----DAGNVFSPFLVDDTSNVQAQEIYPLLG-------------GLTELMKDAGYVVKEEFCS 701 (710)
Q Consensus 656 -----~~~~~~~~~~~~~~~~p~~~~~~~~l~-------------~l~~~~~~~g~~~~~~~~~ 701 (710)
+++..+...+ .+..|+....|..|. ++++.|++.|++++.+++|
T Consensus 669 ~~~~~e~~e~~a~~l--~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 669 IHRHVELGELAAQHI--FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred HcCChHHHHHHHHHH--HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 1111111111 136777777777663 7889999999998877664
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-68 Score=591.66 Aligned_cols=471 Identities=21% Similarity=0.354 Sum_probs=436.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHHhC-CCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 37 RINLLETLKDFAGRGNLSKAFEAFTRIRITA-ASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
...|+.++.+|.+.|++++|+++|+.|...+ ..|+.. +|..++.+|++.++++.+.++|..+.+.|+.||..+++.|
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~--t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS--TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3489999999999999999999999998765 678888 9999999999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHH
Q 005174 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 195 (710)
+.+|+++|+++.|+++|++|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc
Q 005174 196 VVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274 (710)
Q Consensus 196 ~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 274 (710)
++|..+. .|+.+|..+||+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred eehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 005174 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354 (710)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 354 (710)
..||++++.+|++.|++++|.+++..|.+.| +.++..++++|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-----------------------------------~~~d~~~~~~Li~~ 369 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-----------------------------------FPLDIVANTALVDL 369 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhC-----------------------------------CCCCeeehHHHHHH
Confidence 7777777777777766666666666666555 45555566899999
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|
T Consensus 370 y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD- 512 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 512 (710)
+.|.+..++.|+..+|+.++++|++.|++++|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~ 527 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEK 527 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCC
Confidence 9998764499999999999999999999999999999986 67899999999999999999999999998875 4564
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 547 (710)
..+|..++..|++.|++++|.++++.|.++ |+..
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 568999999999999999999999999887 7754
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-68 Score=589.47 Aligned_cols=531 Identities=15% Similarity=0.175 Sum_probs=481.1
Q ss_pred cchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCC-CCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCch
Q 005174 33 EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAAS-HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111 (710)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 111 (710)
++++...+..++..|.+.|++++|+++|+.|...|+. ++.. ++..++.+|.+.|.+..|..++..|.. ||..+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v--~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI--YHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH--HHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 4567888999999999999999999999999999865 4544 778899999999999999999988763 89999
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCC----CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSN----IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (710)
|+.++.+|++.|+++.|.++|+.|. .||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999986 578899999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHHHHHHHHhCCChHHHH
Q 005174 188 MMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML------ERDAVSWNTMISAYASKGLWKEAF 260 (710)
Q Consensus 188 ~~~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~ 260 (710)
.|+++.|..+|+.|. .|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999 9999999999999999999999999999999994 579999999999999999999999
Q ss_pred HHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhc
Q 005174 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340 (710)
Q Consensus 261 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~ 340 (710)
++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 005174 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTA----EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416 (710)
Q Consensus 341 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 416 (710)
+.|+..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999995 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHH
Q 005174 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496 (710)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 496 (710)
++.+|++.|+++.|.++|..|.+.| +.||..+|++++.+|.+ ++++|.++.+.+.. |+. .......+..+.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~ 830 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSW 830 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHH
Confidence 9999999999999999999999999 99999999999977442 34444444332221 110 011112233456
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 497 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
|+.+|++|.+.|+.||..||+.++.++.+.+..+.+..+++.|... +..|+..+|+++|+++++. .++|..++++|.
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 9999999999999999999999998888888888888888887655 6778889999999998543 478999999993
Q ss_pred ---CCCCH
Q 005174 577 ---YTPTS 581 (710)
Q Consensus 577 ---~~p~~ 581 (710)
+.|+.
T Consensus 908 ~~Gi~p~~ 915 (1060)
T PLN03218 908 SLGVVPSV 915 (1060)
T ss_pred HcCCCCCc
Confidence 45554
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-65 Score=568.68 Aligned_cols=555 Identities=18% Similarity=0.220 Sum_probs=466.9
Q ss_pred CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHH
Q 005174 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI-RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215 (710)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~l 215 (710)
.++...|..++..+++.|++++|+++|++|.+.|+ .|+..+++.++.+|.+.|..+.|..++..|.. ||..+|+.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~L 443 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNML 443 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHH
Confidence 34566788888899999999999999999988885 46777788888999988999989888877753 889999999
Q ss_pred HHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCCh
Q 005174 216 VSMYGKFGQVDVARRLFDKML----ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291 (710)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 291 (710)
+.+|++.|+++.|.++|+.|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999984 4788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHh--hcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR--GCYGEYENVRNALITMYSRCKDLRHAYILFK 369 (710)
Q Consensus 292 ~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 369 (710)
++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.. .|+.||..+|++||.+|+++|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976 5788999999999999999999999999999
Q ss_pred hcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC
Q 005174 370 MTAE----KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445 (710)
Q Consensus 370 ~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (710)
.|.+ ++..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.| +.|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-~~p 682 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG-IKL 682 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC
Confidence 9875 45689999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMS----RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 67999999999999999999999999999999999999999999999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH----hcC-------------------CHHHHHHHHHhC---
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG----RAG-------------------LLNKAKEIITKM--- 575 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m--- 575 (710)
+|++.|++++|.++|..|.+. |+.||..+|++++.++. +++ ..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999887 99999999999987643 222 346799999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCe--
Q 005174 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE-TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC-- 652 (710)
Q Consensus 576 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-- 652 (710)
...||..+|+.++.++...+..+.+...++.+.. -.+.+..+|.+|++.+++. .++|..++++|..+|+.+....
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~ 919 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKK 919 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccccc
Confidence 3789999999999777777887777666665432 2455678899999987432 3689999999999999654421
Q ss_pred -eEEEECCeEEEEeeCCCCCcch--hhHHHHHHHHHHHHHHcCcccCCccccHHHHHH
Q 005174 653 -AWVDAGNVFSPFLVDDTSNVQA--QEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVE 707 (710)
Q Consensus 653 -~~~~~~~~~~~~~~~~~~~p~~--~~~~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~ 707 (710)
-|+ +-....-+.. ..+..-|..|+.....--.-|.......+|.+|
T Consensus 920 ~~~~---------~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~ 968 (1060)
T PLN03218 920 SPIV---------IDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKE 968 (1060)
T ss_pred CceE---------EEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccce
Confidence 132 1111122333 334455667776654322445555434444444
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.3e-34 Score=330.25 Aligned_cols=586 Identities=13% Similarity=0.016 Sum_probs=329.7
Q ss_pred HHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccC
Q 005174 44 LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS 123 (710)
Q Consensus 44 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 123 (710)
...+...|++++|+..|+.+...++.... .+..+..++...|+++.|...+..+++.. +.+...+..+...+.+.|
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 33445677777777777777665433211 33444555566677777777777776654 444555666666777777
Q ss_pred ChhHHHHhHhhCCC---CCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHH
Q 005174 124 LYNNACFLVENSNI---RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200 (710)
Q Consensus 124 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 200 (710)
++++|...++.+.. .+...|+.+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+.+.|...+..
T Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 77777777766542 233456666667777777777777777765532 11233444555555666666666666666
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceeh
Q 005174 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277 (710)
Q Consensus 201 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 277 (710)
+....+........++..|.+.|++++|..+++.+.. .+..+|+.+...+...|++++|.+.|+++.+.. +.+...
T Consensus 423 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 501 (899)
T TIGR02917 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPA 501 (899)
T ss_pred HHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHH
Confidence 5522223334444555566666666666666666532 244556666666666666666666666665432 123344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 005174 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357 (710)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 357 (710)
+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.+.+...+..+.+.. +.+...+..+...|.+
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHH
Confidence 5555556666666666666666665543 1233445555555555666666666666555443 2333445555666666
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 358 CKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 358 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
.|++++|..+++.+.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..++
T Consensus 580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666655532 244556666666666666666666666655542 223444555555555666666666666
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (710)
..+.+.. +.+...+..++..+...|++++|..+++.+.+. +...+..+...+...|++++|+..|+++... .|
T Consensus 659 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 734 (899)
T TIGR02917 659 KRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--AP 734 (899)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CC
Confidence 6655543 444555566666666666666666666555432 3445555555566666666666666665553 23
Q ss_pred ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005174 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLG 589 (710)
Q Consensus 512 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~ 589 (710)
+..++..+..++.+.|++++|.+.++.+.+. ...+...+..+...|.+.|+.++|.+.|+++. .+++..+++.+..
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3344555555555566666666665555543 12225555555555666666666666555541 2234455555555
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
.+...|+ ..|...+++++++.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555 445555555555555555555555555555555555555555555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-33 Score=326.85 Aligned_cols=596 Identities=11% Similarity=-0.019 Sum_probs=469.0
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhh
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 113 (710)
+.+...+..+...+...|++++|...++.+.+..+.... ........+...|+++.|...+..+++.+ +.+...+.
T Consensus 224 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~ 299 (899)
T TIGR02917 224 PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL---AHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALL 299 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch---HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHH
Confidence 345567777888888899999999999888876544322 33333444556788889999888888765 33334455
Q ss_pred HHHHHHHccCChhHHHHhHhhCCC---CCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCC
Q 005174 114 KLVTFYASFSLYNNACFLVENSNI---RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190 (710)
Q Consensus 114 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 190 (710)
.+...+...|++++|...|+.... .+...+..+...+.+.|++++|...++.+.... ..+...+..+...+...|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 566777888999999988887642 344567778888888999999999998887653 3355677788888888899
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005174 191 VDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQ 267 (710)
Q Consensus 191 ~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 267 (710)
+++|..+++.+....+.+...+..+...+...|++++|...|+.+.+. +...+..++..+.+.|++++|..+++++.
T Consensus 379 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999998888887445556778888888888899999999988887432 34456677788888999999999998887
Q ss_pred HcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhH
Q 005174 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347 (710)
Q Consensus 268 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 347 (710)
.. .+++..+|+.+...+...|++++|.+.|+++.+... .+...+..+...+...|+++.+...+..+.+.. +.+..+
T Consensus 459 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 535 (899)
T TIGR02917 459 KK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRA 535 (899)
T ss_pred Hh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHH
Confidence 65 445677888888899999999999999998876532 234456666777888889999999988888765 446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 424 (710)
+..+...|.+.|+.++|...|+++.. .+...+..++..|...|++++|..+++.+.... +.+...+..+...+...
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 88888888889999999999887743 345677788888899999999999999887653 55677888888888889
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLF 501 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (710)
|+++.|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|..++
T Consensus 615 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998888765 55677788888889999999999999987764 25678888888999999999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC
Q 005174 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP--YTP 579 (710)
Q Consensus 502 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p 579 (710)
+.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..++.++.+.|++++|.+.++++. .+.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9988764 446667777888888889999999999888764 5666777888889999999999988888772 334
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
+...+..+...|...|+.+.|...++++.+..|+++..+..++.++...|+ ++|++.+++..+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 677788888888888999999999999999999988889999999999998 88888888876643
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.5e-24 Score=252.58 Aligned_cols=593 Identities=11% Similarity=0.012 Sum_probs=400.0
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhh-------------HHHHHHHHhcccCchHhHHHHHHHH
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLD-------------SFAHIIFCCGKVKALAQGKQLHACA 100 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-------------~~~~ll~~~~~~~~~~~a~~~~~~~ 100 (710)
+.++..+..++..+...|+.++|.+.++++.+..+....... ....+.+.+...|++++|.+.++.+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 334555566666666666666666666666654332211100 0112223445556666666666666
Q ss_pred HHhCCCCCCchhh-HHHHHHHccCChhHHHHhHhhCCCC---CCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCC----
Q 005174 101 IALGLEKNPVLVP-KLVTFYASFSLYNNACFLVENSNIR---YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR---- 172 (710)
Q Consensus 101 ~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~---- 172 (710)
++.+ +++..... .+.......|+.++|++.|+++... ++..+..+...+...|++++|+..++++.+....
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 5543 22221111 1111122346666666666665432 2234555666666666666666666666442100
Q ss_pred ------------CCcc---cHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005174 173 ------------GDNF---TYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236 (710)
Q Consensus 173 ------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 236 (710)
++.. .+...+..+........+...+.... ....|+.. ...+...+...|++++|+..|++..
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000 01111111111111222222222222 11122211 1233556778899999999999884
Q ss_pred C--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc-eehHH------------HHHHHHHhcCChHHHHHHHHH
Q 005174 237 E--R-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN-VITWN------------TIAGGCLRTGNFKGVLELLSR 300 (710)
Q Consensus 237 ~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~------------~li~~~~~~g~~~~a~~~~~~ 300 (710)
+ | +...+..+...+.+.|++++|...|++..+...... ...|. .....+.+.|++++|+..|++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 3 677889999999999999999999999877533221 11222 223467789999999999999
Q ss_pred HHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----
Q 005174 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS----- 375 (710)
Q Consensus 301 m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----- 375 (710)
+.+... .+...+..+-..+...|++++|.+.++.+++.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 377 Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH
Confidence 988642 234456667778889999999999999998865 344556677777774 467899999988765431
Q ss_pred -------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchH
Q 005174 376 -------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448 (710)
Q Consensus 376 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 448 (710)
...+..+...+...|++++|+..|++.++.. +-+...+..+...+.+.|++++|...++.+++.. +.+..
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~ 530 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPE 530 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHH
Confidence 1234556777889999999999999998863 2245566777888999999999999999998864 45556
Q ss_pred HHhHHhhhhhhcCChhHHHHHHhhcCCC----Ch---------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 005174 449 LWNSLVEMYARSGKVPEAKSVFDLMSRR----DE---------VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515 (710)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 515 (710)
.+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|+.+++. .+++...
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~ 605 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRI 605 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchH
Confidence 6666666778899999999999988642 11 1223456778899999999999872 2445566
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQ 592 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~ 592 (710)
+..+...+.+.|++++|...|+.+.+. .|+ ...+..++.+|...|++++|++.++... ..| +...+..+..++.
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 777888899999999999999999864 676 8889999999999999999999999874 334 5667777888899
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCc------hHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 593 IHRNTGIGEWAAEKLLETRPENSG------YYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 593 ~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..|+.++|...++.+++..|+++. .+..++.++.+.|++++|++.++...
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999998776543 56677999999999999999988764
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.3e-23 Score=242.84 Aligned_cols=594 Identities=11% Similarity=0.011 Sum_probs=440.3
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchh---
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV--- 112 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 112 (710)
+.+.+....+.+...++.+.|.+.++++... .|+.. ..+..++..+...|+.++|.+.++.+.+.. +.+....
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p-~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~ 102 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELI--DPNNP-DVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSR 102 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHcc--CCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHH
Confidence 3445888888899999999999999999875 44332 378888888899999999999999999886 3333322
Q ss_pred -------------hHHHHHHHccCChhHHHHhHhhCCCCCCccHHH----HHHHHHhCCCchHHHHHHHHHHhCCCCCC-
Q 005174 113 -------------PKLVTFYASFSLYNNACFLVENSNIRYPLPWNL----LISLYVRDGFYAEALCVYKQMQSRRIRGD- 174 (710)
Q Consensus 113 -------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----li~~~~~~~~~~~A~~l~~~m~~~g~~p~- 174 (710)
..+...+.+.|++++|.+.|+.....++..... ........|+.++|+..|+++.+. .|+
T Consensus 103 ~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~ 180 (1157)
T PRK11447 103 TTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGN 180 (1157)
T ss_pred HHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCC
Confidence 333457889999999999999876544333211 111222458999999999999885 344
Q ss_pred cccHHHHHHHHcccCCchHHHHHHHHHHhcCCCh--------------------HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 005174 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS--------------------LFVHNALVSMYGKFGQVDVARRLFDK 234 (710)
Q Consensus 175 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~--------------------~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (710)
...+..+...+...|+.++|...++.+....+.+ ...+...+..+-.....+.|...++.
T Consensus 181 ~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 181 TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4466677788888999999999998876211111 11122222222222334555555554
Q ss_pred cCC--CChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-
Q 005174 235 MLE--RDAV-SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS- 310 (710)
Q Consensus 235 ~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~- 310 (710)
... .|.. ........+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+.......
T Consensus 261 ~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 261 QQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 321 1111 11233556788999999999999998753 236788899999999999999999999999876433221
Q ss_pred hHH------------HHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 005174 311 VAT------------VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KS 375 (710)
Q Consensus 311 ~t~------------~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 375 (710)
..+ ...-..+...|++++|...+..+++.. +.+...+..|...|...|++++|++.|++..+ .+
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 111 112335678899999999999999875 45566778899999999999999999998764 34
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCch
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVE--------PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 447 (710)
...+..+...|. .++.++|+.+++.+...... .....+......+...|++++|.+.++..++.. +.+.
T Consensus 419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~ 495 (1157)
T PRK11447 419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSV 495 (1157)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH
Confidence 556777777664 46789999988775433110 011234455667788999999999999999975 5677
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH---------H
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV---------T 515 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t 515 (710)
.++..+...|.+.|++++|...|+++.+ | +...+..+...+...++.++|+..++++......++.. .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 8888999999999999999999998753 3 55566666667788999999999998875433322221 1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQI 593 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~ 593 (710)
+..+...+...|+.++|..+++. ..++...+..+...|.+.|++++|++.|++.. ..| +...+..++..+..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 23456678889999999998872 13346677889999999999999999999873 344 67889999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.|+.+.|...++.+.+..|+++..+..++.++.+.|++++|.++++.+.....
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999999999999999999999999999999999999999999998876543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.6e-20 Score=208.75 Aligned_cols=570 Identities=10% Similarity=-0.029 Sum_probs=400.7
Q ss_pred HHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChh
Q 005174 47 FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN 126 (710)
Q Consensus 47 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 126 (710)
+...|++++|+..|++..+..+. . ...+..+..++...|+.++|....+..++.. +.|...+..+ .. .++++
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~--n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~---i~~~~ 125 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD--N-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA---IPVEV 125 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH---hccCh
Confidence 33459999999999999876444 3 2388999999999999999999999998875 3334444444 22 28999
Q ss_pred HHHHhHhhCCCC---CCccHHHHHHH--------HHhCCCchHHHHHHHHHHhCCCCCCcccHHHH-HHHHcccCCchHH
Q 005174 127 NACFLVENSNIR---YPLPWNLLISL--------YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV-LKACGEMMDVDFG 194 (710)
Q Consensus 127 ~A~~~~~~~~~~---~~~~~~~li~~--------~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a 194 (710)
+|..+++++... +...+..+... |.+. ++|.+.++ .......|+..+.... .+.|...++++.+
T Consensus 126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 999999997632 23344444444 5555 55555554 3333344455555555 8899999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHh-cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-
Q 005174 195 RVVHSCIDACHEWSLFVHNALVSMYGK-FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE- 272 (710)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~- 272 (710)
..++..+....+.+......|..+|.. .++ +.+..+++...+.|...+..+...|.+.|+.++|.++++++...-..
T Consensus 202 i~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 202 DTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999999995555666667777778888 477 88988888766678899999999999999999999999998654222
Q ss_pred CceehHHHH------------------------------HHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 005174 273 VNVITWNTI------------------------------AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322 (710)
Q Consensus 273 p~~~~~~~l------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~ 322 (710)
|+..+|--+ +..+.+.++++.+.++.. +.|.......-..+...
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVA 354 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccc
Confidence 333332222 344455555554444321 23333322222222223
Q ss_pred cCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----ChhHHHHHHHHHHhcCC---hH
Q 005174 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE-K-----SIITWNSMLSGYTHLDC---AE 393 (710)
Q Consensus 323 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~ 393 (710)
.+...++.+.+..+.+.. +.+....--+.....+.|+.++|.++|+.... + +...-+.++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 345555555555555542 23444444455556788999999999987655 2 22344466777777665 33
Q ss_pred HHHHH----------------------HHHHHHc-CCCC---cHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCch
Q 005174 394 ESAFL----------------------FREMFRS-GVEP---NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447 (710)
Q Consensus 394 ~a~~~----------------------~~~m~~~-g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 447 (710)
++..+ +...... +..| +...+..+..++.. +..++|...+....... |+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---Cch
Confidence 34333 1111111 1223 44455555555554 78888999888887754 444
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHhh
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR--RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH-VTMVAVLSACS 524 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 524 (710)
.....+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. |+. ..+..+...+.
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~ 587 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHH
Confidence 3344445555789999999999997764 345567777888999999999999999998854 443 33334444555
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
..|++++|...+++..+ +.|+...+..+..++.+.|+.++|+..+++. ...| +...+..+..++...|+.+.|..
T Consensus 588 ~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 67999999999999985 5788888999999999999999999999987 3445 56778888889999999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
.++.+++++|+++..+..++.+|...|++++|+..+++..+..
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998887543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=5.3e-20 Score=204.62 Aligned_cols=576 Identities=10% Similarity=-0.011 Sum_probs=415.3
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
+...+..+...|...|++++|+..+++..+. .|+.. .+..++.. .++..++..+++.+++.. +.+..++..+
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~--~~~~~La~---i~~~~kA~~~ye~l~~~~-P~n~~~~~~l 148 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDA--RLERSLAA---IPVEVKSVTTVEELLAQQ-KACDAVPTLR 148 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH--HHHHHHHH---hccChhHHHHHHHHHHhC-CCChhHHHHH
Confidence 3677799999999999999999999999876 44443 34443422 278889999999999886 5667777777
Q ss_pred HHH--------HHccCChhHHHHhHhhCCCCC--CccHHHH-HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 005174 116 VTF--------YASFSLYNNACFLVENSNIRY--PLPWNLL-ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA 184 (710)
Q Consensus 116 ~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 184 (710)
... |.+.+....+++ .+...++ +...... ...|.+.|++++|+.+++++.+.+.. +..-...+-.+
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~a 225 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDV 225 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 776 888777777776 3333344 3333444 89999999999999999999997543 33335555566
Q ss_pred Hcc-cCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHH--------------
Q 005174 185 CGE-MMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-----RDAVSWN-------------- 244 (710)
Q Consensus 185 ~~~-~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~-------------- 244 (710)
|.. .++ +.+..++. .....++.++..+...|.+.|+.++|..++++++. |+..+|-
T Consensus 226 y~q~l~~-~~a~al~~---~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 226 LLAGQLD-DRLLALQS---QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred HHHhhCH-HHHHHHhc---hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence 766 355 66666644 24447888999999999999999999999999832 2222221
Q ss_pred ----------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHH--HHhcCChHHHHHHHHHHHhCCC
Q 005174 245 ----------------TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG--CLRTGNFKGVLELLSRMRTQET 306 (710)
Q Consensus 245 ----------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~ 306 (710)
.++..+.+.+.++-+.++. ...|.... ..+.. ....+...++...++.|.....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 1234455555555444331 13444332 22222 2233666777777777766521
Q ss_pred CCChhHHHHHHHHhhccCChHHHHHHHHHHHhh-c-CCCchhHHHHHHHHHHhcCCH---HHHHHH--------------
Q 005174 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRG-C-YGEYENVRNALITMYSRCKDL---RHAYIL-------------- 367 (710)
Q Consensus 307 ~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~---~~A~~~-------------- 367 (710)
. +.....-+--.....|+.++|.+++...... + -..+....+-|+..|.+.+.+ ..+..+
T Consensus 374 ~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 374 A-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred C-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 1 1111222222345678889999998887763 1 122445566778888877662 222222
Q ss_pred -----------HHhcCC---C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHH
Q 005174 368 -----------FKMTAE---K--SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431 (710)
Q Consensus 368 -----------~~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 431 (710)
+..... . +...|..+..++.. ++.++|+..+.+.... .|+......+..++...|++++|.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 111111 2 55677888877776 8899999988887765 477655444555667899999999
Q ss_pred HHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHHCC
Q 005174 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI---AGYGIQGEGRVALKLFEEMNKNQ 508 (710)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g 508 (710)
..+..+... +|+...+..+...+.+.|++++|...|+...+.++..++... ..+...|++++|+..|++..+
T Consensus 530 ~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-- 604 (987)
T PRK09782 530 AAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-- 604 (987)
T ss_pred HHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--
Confidence 999987654 344455677788899999999999999988765444333333 333445999999999999987
Q ss_pred CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 005174 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWA 585 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 585 (710)
..|+...+..+..++.+.|++++|...+++... +.|+ ...++.+..++...|+.++|++.+++. ...| +...+.
T Consensus 605 l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 605 IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 467888899999999999999999999999986 4787 788899999999999999999999987 3344 678899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.+..++...|+++.|+..++++++++|+++......+++..+..+++.|.+-+++--...+
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999999999999997776654443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-20 Score=185.03 Aligned_cols=443 Identities=13% Similarity=0.085 Sum_probs=323.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005174 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222 (710)
Q Consensus 143 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~ 222 (710)
-..|..-..+.|++++|.+.....-..+ ..+..+...+-..+.+..+.+.....-.......+--..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3445566667788888877655443321 112222222223344444443322222222233334456777777777777
Q ss_pred CCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHH-HHHHhcCChHHHHHHH
Q 005174 223 GQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA-GGCLRTGNFKGVLELL 298 (710)
Q Consensus 223 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~ 298 (710)
|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+ ..+-..|+..+|...|
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 8888888887777442 455777777777778888888777777765 455544333222 2233345666666555
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh--
Q 005174 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI-- 376 (710)
Q Consensus 299 ~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-- 376 (710)
.+..+.. | .-..+|+.|...+-..|++-.|+..|++...-|+
T Consensus 208 lkAi~~q--p----------------------------------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f 251 (966)
T KOG4626|consen 208 LKAIETQ--P----------------------------------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF 251 (966)
T ss_pred HHHHhhC--C----------------------------------ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc
Confidence 5554321 1 1123456677777777888888888877665433
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHh
Q 005174 377 -ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454 (710)
Q Consensus 377 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 454 (710)
..|-.|...|...+.+++|+..|.+.... +|+ ...+..+...|...|.++.|+..+++.+... +.-...|+.|.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~Nla 327 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLA 327 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHH
Confidence 46777888888888899998888877664 555 4566677777888899999999999988864 44467899999
Q ss_pred hhhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHH
Q 005174 455 EMYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVV 530 (710)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 530 (710)
.++-..|++.+|.+.+.+... + ...+.+.|...|...|..++|..+|....+ +.|. ...++.|...|-..|+++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHH
Confidence 999999999999999998764 3 566889999999999999999999999887 5676 457888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 531 EGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT-SAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 531 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
+|...+++.. .|+|+ ...|+.+...|-..|+.+.|++.+.+. .+.|. ....+.|...|...|+..+|+..++.+
T Consensus 406 ~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 406 DAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 9999999987 48999 889999999999999999999999887 35664 567889999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHhcCCchH
Q 005174 608 LETRPENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 608 ~~~~p~~~~~~~~l~~~~~~~g~~~~ 633 (710)
++++||.+..|..+..++---..|.+
T Consensus 483 LklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999988877777766
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-19 Score=176.50 Aligned_cols=358 Identities=13% Similarity=0.129 Sum_probs=277.9
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchh-HHHHHHH
Q 005174 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD-SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALIT 353 (710)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~-~~~~li~ 353 (710)
.+|..+...+-..|++++|+.+++.+.+. +|+ ...|..+..++...|+.+.+.+.+...++.. |+.. +.+.+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 34444444444444444444444444432 121 2233334444444444444444444444322 2221 2234445
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEK---SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY-VTIASILPLCARVANLQH 429 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 429 (710)
..-..|++++|...+.+..+- -.+.|+.|...+-..|+...|+..|++.... .|+. ..|..+-..|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 555678899988888765543 2378999999999999999999999998865 4553 578888888888999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
|...+.+..... +....++..+...|-..|.++.|...+++..+. =...|+.|..++-..|++.+|...|.+.+.
T Consensus 271 Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 999988888764 666888999999999999999999999998753 356899999999999999999999999987
Q ss_pred CCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HH
Q 005174 507 NQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT-SA 582 (710)
Q Consensus 507 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~ 582 (710)
+.|+ ....+.|...+...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+..+++. .++|+ ..
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 4555 55788899999999999999999999875 6888 778999999999999999999999987 57776 56
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.++.+...|...|+...|.+.+.+++.++|.-++.+..|+.+|..+|+..+|+.-++.......
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 8899999999999999999999999999999999999999999999999999999888765443
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.2e-17 Score=169.52 Aligned_cols=577 Identities=13% Similarity=0.056 Sum_probs=412.4
Q ss_pred chHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcc--cCchHhHHHHHHHHHHhC--CCCCCchhhHHHHHHHccCChhHH
Q 005174 53 LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGK--VKALAQGKQLHACAIALG--LEKNPVLVPKLVTFYASFSLYNNA 128 (710)
Q Consensus 53 ~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 128 (710)
.+.|...|...... .|+. ....+.+||.. .+++..+..+|..++..+ ..+|+.+ .+...+.++|+.+.|
T Consensus 146 ~~~A~a~F~~Vl~~--sp~N---il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDN---ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcc---hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhH
Confidence 58899999888764 4444 56667777654 468999999999877665 3455543 344667899999999
Q ss_pred HHhHhhCCCCCCccHHHHHHHHH---h---CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHH
Q 005174 129 CFLVENSNIRYPLPWNLLISLYV---R---DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202 (710)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~---~---~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 202 (710)
...|....+-|+..-++++.... . ...+..++.++...-... .-++...+.|-+-+...|++..+..+...+.
T Consensus 219 ~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 219 LLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 99999887777755555543222 1 223455666666554321 2356677788888889999999999888887
Q ss_pred -hcC--CChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--C--hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCce
Q 005174 203 -ACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLER--D--AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275 (710)
Q Consensus 203 -~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 275 (710)
... ..-...|-.+..+|...|++++|...|-+..+. | +..+--+...|.+.|+.+.+...|+..... .+-+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchH
Confidence 222 122345777889999999999999999887543 2 334556778899999999999999998775 33345
Q ss_pred ehHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHH----HHHhhcCCCchhH
Q 005174 276 ITWNTIAGGCLRTG----NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG----SAVRGCYGEYENV 347 (710)
Q Consensus 276 ~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~----~~~~~~~~~~~~~ 347 (710)
.+..+|...|...+ ..+.|..++.+..+.- ..|...|..+-..+- .++.......+. .+...+..+.+.+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 66666666676664 4566777776666543 223444444433333 333333344443 4445666788889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC-------Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH-
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEK-------SI------ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT- 413 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t- 413 (710)
.|.+...+...|.+++|...|++.... |. .+--.+...+-..++.+.|.+.|+..... .|.-++
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 999999999999999999999865432 22 12233455666778999999999999887 455443
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-----CChhHHHHHHHHH
Q 005174 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTSLIAGY 488 (710)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~ 488 (710)
|..+.......+...+|...+..+.... ..++.+++.+.+.|.+...+..|.+-|..+.+ +|+.+.-+|.+.|
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 3333323334567888999999888875 66777788888899999999999886666543 2555555555544
Q ss_pred Hh------------cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005174 489 GI------------QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556 (710)
Q Consensus 489 ~~------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 556 (710)
.+ .+..++|+++|.+.+... +-|...-+.+.-.++..|++.+|..+|...++. ..-...+|-.+.
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNla 687 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLA 687 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHH
Confidence 32 345788999999998753 336677778888889999999999999999986 333456788999
Q ss_pred HHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh-----
Q 005174 557 DLYGRAGLLNKAKEIITKMP----YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA----- 627 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----- 627 (710)
.+|..+|++-.|+++|+..- ...+..+...|..++...|.+.++.+++..+..+.|.++..-..++-+..+
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 99999999999999998762 345788899999999999999999999999999999998777766665443
Q ss_pred --------------cCCchHHHHHHHHHHhCCCc
Q 005174 628 --------------TGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 628 --------------~g~~~~A~~~~~~m~~~~~~ 647 (710)
.+.+++|.+++..|...+-+
T Consensus 768 lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 768 LRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667788888888765543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=3.1e-17 Score=179.89 Aligned_cols=417 Identities=14% Similarity=0.057 Sum_probs=283.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-ceehHHHHHHHHHhc
Q 005174 212 HNALVSMYGKFGQVDVARRLFDKML--ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV-NVITWNTIAGGCLRT 288 (710)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 288 (710)
+......|.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.+....+. .| +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 3455666777888888888888763 356677777888888888888888888887764 33 345677778888888
Q ss_pred CChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005174 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368 (710)
Q Consensus 289 g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 368 (710)
|++++|+.-|......+...+.. ...++..... ..+........+.. +.+...+..+.. |........+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 88888887776654432111111 1111111111 11111112222211 111111122211 21111111111111
Q ss_pred HhcCCCCh---hHHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCCc-HHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005174 369 KMTAEKSI---ITWNSMLSG---YTHLDCAEESAFLFREMFRSG-VEPN-YVTIASILPLCARVANLQHGKEFHCYILRR 440 (710)
Q Consensus 369 ~~~~~~~~---~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 440 (710)
....+.+. ..+..+... ....+++++|+..|++....+ ..|+ ...+..+...+...|++++|...+...++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11111111 111111111 123467899999999998765 2343 345666666778899999999999999886
Q ss_pred CCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHH
Q 005174 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTM 516 (710)
Q Consensus 441 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 516 (710)
. +.....|..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ...+
T Consensus 361 ~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~ 436 (615)
T TIGR00990 361 D--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSH 436 (615)
T ss_pred C--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHH
Confidence 4 45567888889999999999999999998764 36778999999999999999999999999885 454 5567
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHH
Q 005174 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTS-------A-MWAT 586 (710)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ 586 (710)
..+...+.+.|++++|...|+..... .|+ ...++.+..+|...|++++|++.|++. ...|+. . .++.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77788889999999999999998864 566 788999999999999999999999886 233321 1 1122
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+..+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.++...+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223344699999999999999999999999999999999999999999999887653
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=4.1e-18 Score=177.45 Aligned_cols=291 Identities=12% Similarity=0.041 Sum_probs=141.3
Q ss_pred HhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc---eehHHHHHHHHHhcCChHH
Q 005174 220 GKFGQVDVARRLFDKMLE--R-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN---VITWNTIAGGCLRTGNFKG 293 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~ 293 (710)
...|++++|...|+++.+ | +..+|..+...+.+.|++++|..+++.+...+..++ ...+..+...|.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 344555555555555532 1 233455555555555555555555555544321111 1234445555555555555
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY----ENVRNALITMYSRCKDLRHAYILFK 369 (710)
Q Consensus 294 a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 369 (710)
|..+|+++.+.. ..+..++..+...+...|++++|...+..+.+.+..+. ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554431 12233344444444444444444444444433322111 1123345555666666666666666
Q ss_pred hcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCc
Q 005174 370 MTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446 (710)
Q Consensus 370 ~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 446 (710)
++.+ .+...+..+...|.+.|++++|.++|+++...+......++..+..++...|++++|...+..+.+.. |+
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~ 281 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---PG 281 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC
Confidence 5543 23345556666666666666666666666654322222344455555555555555555555555432 23
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcC--CCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChH
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMS--RRDEVTYTSLIAGYGI---QGEGRVALKLFEEMNKNQIKPDHV 514 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 514 (710)
...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. .|+.++++.+|++|.+.+++|++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3333455555555555555555555443 2344445444444432 334555555555555544444443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=8.4e-18 Score=175.11 Aligned_cols=291 Identities=10% Similarity=0.072 Sum_probs=219.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhccCch
Q 005174 354 MYSRCKDLRHAYILFKMTAEK---SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN---YVTIASILPLCARVANL 427 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 427 (710)
.+...|++++|...|+++.+. +..+|..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 455667777777777776542 345677777777888888888888887776542222 23456667777778888
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC--------hhHHHHHHHHHHhcCChHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD--------EVTYTSLIAGYGIQGEGRVALK 499 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~ 499 (710)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+...|++++|..
T Consensus 124 ~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888877653 4566778888888888888888888888776431 1235567778888999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 005174 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITKMP- 576 (710)
Q Consensus 500 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~- 576 (710)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ...++.++.+|.+.|++++|.+.++++.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988743 223556777778888999999999999998764 454 4567888999999999999999998873
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCcCCCC
Q 005174 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA---TGCWDKLAKVRTCMRDLGVRKIPG 651 (710)
Q Consensus 577 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 651 (710)
..|+...+..++..+...|+.+.|...++.+++..|++. .+..+...+.. .|+.+++..+++.|...+++..|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 457766778888889999999999999999999999876 44445555443 568999999999999888877776
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=7.3e-16 Score=160.48 Aligned_cols=477 Identities=16% Similarity=0.182 Sum_probs=309.3
Q ss_pred hHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCC------CccHHHHHHHHHhCCCchHHHHHH
Q 005174 90 LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY------PLPWNLLISLYVRDGFYAEALCVY 163 (710)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~l~ 163 (710)
+..+.+++......+ +.++.+.+.|.+.|.-.|+++.++.+...+.... ..+|-.+.++|...|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 333444444443333 5566677777777777777777777666544222 234666777777777777777777
Q ss_pred HHHHhCCCCCCccc--HHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC----CHHHHHHHHhhcCC
Q 005174 164 KQMQSRRIRGDNFT--YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFG----QVDVARRLFDKMLE 237 (710)
Q Consensus 164 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~ 237 (710)
.+-.+ ..||.++ +--|.+.+...|+++.+...|+.+..-.+.+..+...|...|+..+ ..+.|..++.+..+
T Consensus 331 ~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 331 MESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 66554 3444433 3345566777777777777777777666666666666666666664 45566666666644
Q ss_pred C---ChhHHHHHHHHHHhCCChHHHHHHHHHH----HHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC
Q 005174 238 R---DAVSWNTMISAYASKGLWKEAFQLFVEM----QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ---ETY 307 (710)
Q Consensus 238 ~---~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~ 307 (710)
+ |...|-.+...+-+..-+ .++..|... ...+-.+.....|.+...+...|++.+|...|.+.... -..
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 3 455565555555444333 336555443 34444466677888888888888888888888887655 222
Q ss_pred CCh-----h-HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhH
Q 005174 308 LDS-----V-ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIIT 378 (710)
Q Consensus 308 p~~-----~-t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 378 (710)
+|. . +--.+-...-..++.+.|.+++..+++.. +.....|--|..+....+...+|...++.... .|+..
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 332 1 12222333445567888888888887754 11122222222222223566777777776543 46677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhc------------cCchHHHHHHHHHHHHhCCCCC
Q 005174 379 WNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCAR------------VANLQHGKEFHCYILRRAMFNE 445 (710)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~ 445 (710)
|+.+...+.....+..|..-|......- ..+|......|-+.|.. .+..++|.++|.++++.. +.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pk 644 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PK 644 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cc
Confidence 8777778888888888888666655432 23677776666665532 234678888888888875 77
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHVTMVAVLS 521 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~ 521 (710)
|...-|-+.-.++.+|++.+|..+|..+.+. +..+|-.+.++|...|++..|+++|+...+. .-+-+......|..
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 8888888888999999999999999888753 5578888999999999999999999886553 43445667788888
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHH------------------HHHhcCCHHHHHHHHHhCC
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVD------------------LYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~------------------~~~~~g~~~~A~~~~~~m~ 576 (710)
++...|.+.+|.+........ .|. ...+|..+- .....+..+.|.++|..+.
T Consensus 725 a~y~~~~~~eak~~ll~a~~~---~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHL---APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHh---CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998888877754 443 233332221 1222345677888888773
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.2e-15 Score=170.35 Aligned_cols=185 Identities=9% Similarity=0.002 Sum_probs=110.7
Q ss_pred hcCChhHHHHHHhhcCCCC---hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHhhccCcHHH
Q 005174 459 RSGKVPEAKSVFDLMSRRD---EV-TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP---DHVTMVAVLSACSHSGLVVE 531 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~ 531 (710)
..|++++|...|+.+.+.+ +. .-..+...|...|++++|+..|+++.+..... .......+..++...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 4455566666665555321 11 11113445666666666666666655432110 01234444445566666666
Q ss_pred HHHHHHHHHHHhC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 005174 532 GQKQFERMTSIYG----------IFPQ---LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRN 596 (710)
Q Consensus 532 a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~ 596 (710)
|.++++.+..... -.|+ ...+..+...+...|++++|++.++++. .+.+...+..+...+...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 6666666654210 0122 2234556667777777777777777762 22355667777777777777
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 597 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+.|+..++++++++|++...+..++..+.+.|+|++|+++++.+..
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777776654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=4e-16 Score=170.32 Aligned_cols=350 Identities=13% Similarity=0.021 Sum_probs=225.0
Q ss_pred HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHH
Q 005174 220 GKFGQVDVARRLFDKMLER------DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 293 (710)
.+..+++.-.-.|..-++. +....-.++..+.+.|++++|+.+++........ +...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3456666666666655442 2223344566677778888888888777665333 33445555566666777777
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 005174 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373 (710)
Q Consensus 294 a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (710)
|+..|+++.... | .+...+..+...+...|++++|...|++...
T Consensus 95 A~~~l~~~l~~~--P----------------------------------~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 95 VLQVVNKLLAVN--V----------------------------------CQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred HHHHHHHHHHhC--C----------------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776542 2 2233344555556666666666666665443
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHH
Q 005174 374 ---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 374 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
.+...|..+...+...|++++|...++.+......+ ...+.. +..+...|++++|...+..+++.. ..++....
T Consensus 139 l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~ 215 (656)
T PRK15174 139 AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFF-ALERQESA 215 (656)
T ss_pred hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC-CCcchhHH
Confidence 244566666666777777777777776665543222 112222 223556677777777776666553 22333344
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRV----ALKLFEEMNKNQIKPD-HVTMVAVLSA 522 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a 522 (710)
..+...+.+.|++++|...|++..+. +...+..+...|...|++++ |+..|++..+. .|+ ...+..+...
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 293 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 44556677777777777777766532 45567777777788888775 78888888764 444 5577777778
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCChHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWA-TLLGACQIHRNTGI 599 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~-~l~~~~~~~g~~~~ 599 (710)
+...|++++|...+++... ..|+ ...+..+..+|.+.|++++|++.++++. ..|+...+. .+..++...|+.+.
T Consensus 294 l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888775 3566 5667778888888888888888888773 455544433 34566778888888
Q ss_pred HHHHHHHHHhhCCCC
Q 005174 600 GEWAAEKLLETRPEN 614 (710)
Q Consensus 600 a~~~~~~~~~~~p~~ 614 (710)
|...++.+++..|++
T Consensus 371 A~~~l~~al~~~P~~ 385 (656)
T PRK15174 371 AESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHhChhh
Confidence 888888888888875
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=5.8e-15 Score=139.76 Aligned_cols=337 Identities=14% Similarity=0.124 Sum_probs=232.6
Q ss_pred hhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHH--HhcccCchHhH-HHHHHHHHHhCCCCCCch
Q 005174 35 IMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIF--CCGKVKALAQG-KQLHACAIALGLEKNPVL 111 (710)
Q Consensus 35 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~ 111 (710)
..+.+=|.++.. ...|.+.++.-+|+.|+..|+...+. .-..|++ +|....++.-+ .+.|-.+.+.| ..+..+
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~k--vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~s 189 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEK--VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSS 189 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHH--HHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccc
Confidence 334455555543 56789999999999999998776654 3333332 23333333222 22233333333 222233
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 191 (710)
| +.|.+.+ ++-+...+...+|..||.++++.-..++|.++|++-.....+.+..+||.+|.+..-..
T Consensus 190 W--------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-- 256 (625)
T KOG4422|consen 190 W--------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-- 256 (625)
T ss_pred c--------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc--
Confidence 3 4455443 55556667788999999999999999999999999998888999999999998754332
Q ss_pred hHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005174 192 DFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270 (710)
Q Consensus 192 ~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 270 (710)
++.+...|. ....||..++|+++...++.|+++.|. ..|++++.+|++-|
T Consensus 257 --~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiG 307 (625)
T KOG4422|consen 257 --GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIG 307 (625)
T ss_pred --cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhC
Confidence 366666666 777777777777777777777776665 34678889999999
Q ss_pred CCCceehHHHHHHHHHhcCChHH-HHHHHHHHHh----CCCC---C-ChhHHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 005174 271 VEVNVITWNTIAGGCLRTGNFKG-VLELLSRMRT----QETY---L-DSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341 (710)
Q Consensus 271 ~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~---p-~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~ 341 (710)
+.|...+|..+|..+++.++..+ +..++.++.. +..+ | |...|...+..|.+..+.+.|.+++.......-
T Consensus 308 VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N 387 (625)
T KOG4422|consen 308 VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN 387 (625)
T ss_pred CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc
Confidence 99999999999999999988754 5555555543 2233 3 345578889999999999999988876654320
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 005174 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 421 (710)
+...|.. ++ ...-|..+....|+....+.-...|..|+-.-+-|+..+...++++.
T Consensus 388 -------------~~~ig~~------~~-----~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~ 443 (625)
T KOG4422|consen 388 -------------WKFIGPD------QH-----RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL 443 (625)
T ss_pred -------------hhhcChH------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH
Confidence 0000100 00 11234456666777778888888899998887888888888888888
Q ss_pred hccCchHHHHHHHHHHHHhC
Q 005174 422 ARVANLQHGKEFHCYILRRA 441 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~ 441 (710)
...+.++-..++|..++.-|
T Consensus 444 ~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 444 DVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hhcCcchhHHHHHHHHHHhh
Confidence 88888888888887777665
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.6e-15 Score=166.34 Aligned_cols=418 Identities=11% Similarity=-0.039 Sum_probs=220.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005174 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222 (710)
Q Consensus 143 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~ 222 (710)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|+++.|...+.....-.+.+...+..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 44566778888999999999988776 4567777777777777778888777777777644455666777777778888
Q ss_pred CCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHH
Q 005174 223 GQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299 (710)
Q Consensus 223 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (710)
|++++|..-|...... +......++..+.. ..+........+. -+++..++..+.. +...........-+.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 8888877766544211 11111111111111 1122222222221 1122222322222 211111111111111
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHH---HHhcCCHHHHHHHHHhcCCC--
Q 005174 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM---YSRCKDLRHAYILFKMTAEK-- 374 (710)
Q Consensus 300 ~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~-- 374 (710)
+-.+ ..+.... .+..+... ....+++++|.+.|+...+.
T Consensus 282 ~~~~--~~~~~~~----------------------------------~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 282 DSNE--LDEETGN----------------------------------GQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred cccc--ccccccc----------------------------------chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 1000 0000000 00000000 01224455555555443321
Q ss_pred ----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHH
Q 005174 375 ----SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449 (710)
Q Consensus 375 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 449 (710)
+...|+.+...+...|++++|+..|++.++. .|+ ...|..+...+...|++++|...+..+++.. +.+..+
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~ 401 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDI 401 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 2234555555555566666666666655543 233 3344455555555666666666666655543 444556
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhc
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSH 525 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 525 (710)
+..+...|...|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+. .| +...+..+...+..
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 666666666666666666666665432 3445556666666677777777777766653 23 34556666666666
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC--h------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ--L------EHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHR 595 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~--~------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g 595 (710)
.|++++|...|+..... .|+ . ..++.....+...|++++|.+++++. ...| +...+..+...+...|
T Consensus 480 ~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred ccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc
Confidence 77777777777666542 332 0 11222222333457777777777664 3334 3345666667777777
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 005174 596 NTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~ 613 (710)
+++.|...++++.++.+.
T Consensus 557 ~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 557 DVDEALKLFERAAELART 574 (615)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 777777777777776554
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=2.8e-14 Score=156.11 Aligned_cols=196 Identities=10% Similarity=0.047 Sum_probs=131.6
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---------ChhHHHHHHHH
Q 005174 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---------DEVTYTSLIAG 487 (710)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~ 487 (710)
.+-++...++..++.+.++.+...+ .+....+-.++.++|...+++++|..+|..+... +......|.-+
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~-~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEG-YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 3446677778888888888888777 5545567777888888888888888888876432 12224567777
Q ss_pred HHhcCChHHHHHHHHHHHHCCC-----------CCC--hH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHH
Q 005174 488 YGIQGEGRVALKLFEEMNKNQI-----------KPD--HV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHF 552 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 552 (710)
|...+++++|..+++++.+... .|| -. .+..+...+...|++.+|++.++++... .|. ....
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~ 453 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLR 453 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 7788888888888888776211 122 11 2334455566777777777777777643 454 6677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
..+.+.+...|++.+|++.++... ..| +..+......++...+++..|+...+.+.+..|+++.
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 777777777777777777776652 344 3445555666666677777777777777777777764
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=1.5e-14 Score=158.17 Aligned_cols=348 Identities=11% Similarity=-0.021 Sum_probs=234.1
Q ss_pred ccCChhHHHHhHhhCCCC------CCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHH
Q 005174 121 SFSLYNNACFLVENSNIR------YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194 (710)
Q Consensus 121 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 194 (710)
+..+++.-.-.|...++. +..-..-++..+.+.|+++.|+.+++........ +...+..+..++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHH
Confidence 444555555555443321 1122445667778888888888888887765333 233444555566678888888
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005174 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE--R-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271 (710)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 271 (710)
...++.+..-.+.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|...++.+.....
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 8888888755666677788888888888888888888888743 3 566778888888888888888888887766433
Q ss_pred CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHH
Q 005174 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351 (710)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 351 (710)
.+ ...+..+ ..+.+.|++++|+..++.+......++......+..++...|+.++|...+...++.. +.+..++..+
T Consensus 176 ~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~L 252 (656)
T PRK15174 176 PR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSL 252 (656)
T ss_pred CC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 22 2233233 3477788888888888887766433444444445566677788888888887777654 4456667777
Q ss_pred HHHHHhcCCHHH----HHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 005174 352 ITMYSRCKDLRH----AYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424 (710)
Q Consensus 352 i~~~~~~g~~~~----A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 424 (710)
...|...|++++ |...|++... .+...+..+...+.+.|++++|+..+++..... +.+......+..++...
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 788888888775 6777776543 245677777778888888888888888777653 22334455556677777
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 475 (710)
|++++|...+..+.+.. +.+...+..+..++...|+.++|...|++..+
T Consensus 332 G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 332 GQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78888877777777654 22233344455667777778888777777653
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=1e-14 Score=150.15 Aligned_cols=552 Identities=13% Similarity=0.017 Sum_probs=332.8
Q ss_pred HHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCC
Q 005174 58 EAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI 137 (710)
Q Consensus 58 ~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 137 (710)
.++-.+...|+.|+.. ||.++|..|+..|+.+.|. ++..|.-..++.+..+++.++....+.++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRv--tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRV--TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchh--hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C
Confidence 3567788889999998 9999999999999999888 9999988888888899999999888888887765 6
Q ss_pred CCCccHHHHHHHHHhCCCchHHHHHHHH-HH-------hCCCCCCcccHHHHHHHHc--------------ccCCchHHH
Q 005174 138 RYPLPWNLLISLYVRDGFYAEALCVYKQ-MQ-------SRRIRGDNFTYPSVLKACG--------------EMMDVDFGR 195 (710)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~--------------~~~~~~~a~ 195 (710)
|.+.+|+.|..+|.+.|+... ++..++ |. ..|+.--..-+-..+.+|. ..|.++.+.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 777889999999999998765 333222 22 1222211111211112211 112222222
Q ss_pred HHHHHHH--hcCCChHHHHHHHHHHH-HhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005174 196 VVHSCID--ACHEWSLFVHNALVSMY-GKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271 (710)
Q Consensus 196 ~~~~~~~--~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 271 (710)
++...+. .-..|..+ .++-. .....+++-........+ ++..+|.+++.+-.-+|+++.|..++.+|++.|+
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 2222221 00111111 11111 112234444444444444 7899999999999999999999999999999999
Q ss_pred CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHH-----------HHHHHh--
Q 005174 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI-----------HGSAVR-- 338 (710)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i-----------~~~~~~-- 338 (710)
+.+.+-|-.|+-+ .++...+..+++.|.+.|+.|+..|+...+..+...|....+... ...+.+
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 9998888877766 888999999999999999999999998888777775433222111 111111
Q ss_pred -----------------------hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHh
Q 005174 339 -----------------------GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK-------SIITWNSMLSGYTH 388 (710)
Q Consensus 339 -----------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~ 388 (710)
.|+.....+|...+. ....|+-++..++-..+..+ ++..|..++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 112222222222111 11235545555554444322 34444444443332
Q ss_pred cC----------------------ChHHHHHHHHHHHHcCCCCcHH----------------------------HHHHHH
Q 005174 389 LD----------------------CAEESAFLFREMFRSGVEPNYV----------------------------TIASIL 418 (710)
Q Consensus 389 ~g----------------------~~~~a~~~~~~m~~~g~~p~~~----------------------------t~~~ll 418 (710)
.- +..+..++.... .||.. .-..++
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 21 111111111111 22211 122334
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC------hhHHHHHHHHHHhcC
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD------EVTYTSLIAGYGIQG 492 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g 492 (710)
..|++.-+..++...-+.....- ++ ..|..||+.+....+++.|..+.+++..++ ..-+..+.+.+.+.+
T Consensus 467 l~l~se~n~lK~l~~~ekye~~l-f~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLL-FA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 44444444444443222222211 21 468999999999999999999999998774 446788899999999
Q ss_pred ChHHHHHHHHHHHHCCC-CCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005174 493 EGRVALKLFEEMNKNQI-KPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 570 (710)
...++..++++|.+.-. .|+ ..++-.++......|..+.-.++++-+... |+.-+ .-++....+.++...|.+
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~et----gPl~~vhLrkdd~s~a~e 617 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSET----GPLWMVHLRKDDQSAAQE 617 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhhc----ccceEEEeeccchhhhhh
Confidence 99999999999987422 222 456667777888888888888888877654 55442 334455566777777766
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHH---------------------hcCChHHHHHHHHHH-Hhh-CCC------------
Q 005174 571 IITKM--PYTPTSAMWATLLGACQ---------------------IHRNTGIGEWAAEKL-LET-RPE------------ 613 (710)
Q Consensus 571 ~~~~m--~~~p~~~~~~~l~~~~~---------------------~~g~~~~a~~~~~~~-~~~-~p~------------ 613 (710)
+++.. ..+|.+.....+.+.+. +.|++..+....+.- ... .|.
T Consensus 618 a~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~l 697 (1088)
T KOG4318|consen 618 APEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPL 697 (1088)
T ss_pred cchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccH
Confidence 66544 12333333333333322 222222221111100 000 000
Q ss_pred --------CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 614 --------NSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 614 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..+....|...|.+.|+|+.|..+|.+|.
T Consensus 698 Ell~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 698 ELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred HHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 13456668889999999999999999987
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.3e-12 Score=135.81 Aligned_cols=467 Identities=15% Similarity=0.074 Sum_probs=316.8
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhC-CCCCCchh
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLV 112 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 112 (710)
+|..+.+.....-+...|++++|.+++.+.....+.... .|..|...|-..|+.+++...+ ++... .+.|...|
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W 210 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---AYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELW 210 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---hHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHH
Confidence 344555555555556669999999999999887655444 8999999999999998776643 33333 36677899
Q ss_pred hHHHHHHHccCChhHHHHhHhhCCCCCCccHHHH---HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHH----HHHHH
Q 005174 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL---ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS----VLKAC 185 (710)
Q Consensus 113 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~~~ 185 (710)
..+.....+.|.++.|+-.|.+..+.++.-|-.+ +..|-+.|+...|.+-|.++.....+.|-.-+.. +++.+
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876666555554 5788899999999999999987633222222333 34445
Q ss_pred cccCCchHHHHHHHHHH--hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh-------------------
Q 005174 186 GEMMDVDFGRVVHSCID--ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE----RDA------------------- 240 (710)
Q Consensus 186 ~~~~~~~~a~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~------------------- 240 (710)
...++.+.|...+.... .+-..+...++.++..|.+...++.|......+.. +|.
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 55666677766666655 45566777889999999999999999887766632 111
Q ss_pred ---hHHH----HHHHHHHhCCChHHHHHHHHHHHHcC--CCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 005174 241 ---VSWN----TMISAYASKGLWKEAFQLFVEMQEEG--VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311 (710)
Q Consensus 241 ---~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 311 (710)
.+|+ -+.-++......+....+.....+.. +.-+...|.-+..++.+.|++.+|+.+|..+......-+..
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 1122 12233444444444444555555555 33456678889999999999999999999999887777788
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------------hHH
Q 005174 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI------------ITW 379 (710)
Q Consensus 312 t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~ 379 (710)
.|..+...+...|..++|.+.+..++... +.+..+.-.|-..|.+.|+.++|.+.+..+..+|. ..-
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 88888999999999999999999998865 44556667888899999999999999999876652 111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC----------------------CCCcHHHHHHHHHHHhccCchHHHHHH----
Q 005174 380 NSMLSGYTHLDCAEESAFLFREMFRSG----------------------VEPNYVTIASILPLCARVANLQHGKEF---- 433 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~---- 433 (710)
-.....+.+.|+.++=+.+-..|+..+ ..-...+...++.+-.+.++......-
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 223445667777776555555554321 111122222233333333321111111
Q ss_pred --HHHHHHhCCCCCc--hHHHhHHhhhhhhcCChhHHHHHHhhcCCC-----Chh----HHHHHHHHHHhcCChHHHHHH
Q 005174 434 --HCYILRRAMFNEH--LLLWNSLVEMYARSGKVPEAKSVFDLMSRR-----DEV----TYTSLIAGYGIQGEGRVALKL 500 (710)
Q Consensus 434 --~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~li~~~~~~g~~~~A~~~ 500 (710)
.......+ ...+ -..+..++..+++.+++++|+.+...+..- +.. .=..++.+....+++..|...
T Consensus 610 ~~~~~~e~~~-Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 610 TEFRAVELRG-LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11111111 1111 235667778888889999998888877643 111 234456677778888888888
Q ss_pred HHHHHHC
Q 005174 501 FEEMNKN 507 (710)
Q Consensus 501 ~~~m~~~ 507 (710)
++.|...
T Consensus 689 lR~~i~~ 695 (895)
T KOG2076|consen 689 LRSVITQ 695 (895)
T ss_pred HHHHHHH
Confidence 8888764
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=4.7e-14 Score=157.67 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=145.2
Q ss_pred HHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCCh
Q 005174 46 DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125 (710)
Q Consensus 46 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 125 (710)
.....|+.++|+++|.........+. ..+..+..++...|++++|..+++.+++.. +.+...+..+..++.+.|++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~~~~a---~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHMQLPA---RGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 33456777777776666654221111 145666666666666666666666666553 33444555555556666666
Q ss_pred hHHHHhHhhCC---CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHH
Q 005174 126 NNACFLVENSN---IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202 (710)
Q Consensus 126 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 202 (710)
++|...+++.. ..+.. |..+...+...|++++|+..+++..+.
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------------------------------- 145 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------------------------------- 145 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------------------
Confidence 66666555542 12223 555555555556666666666555542
Q ss_pred hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--------HHHHHHHHHH-----hCCCh---HHHHHHHHHH
Q 005174 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV--------SWNTMISAYA-----SKGLW---KEAFQLFVEM 266 (710)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~a~~~~~~m 266 (710)
.+.+...+..+..++...|..+.|...++.... +.. ....++.... ..+++ ++|++.++.+
T Consensus 146 --~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 146 --APQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred --CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 233444444455556666777777777766654 211 1111222111 11223 5666666666
Q ss_pred HHc-CCCCceeh-HH----HHHHHHHhcCChHHHHHHHHHHHhCCCC-CChhHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 005174 267 QEE-GVEVNVIT-WN----TIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339 (710)
Q Consensus 267 ~~~-g~~p~~~~-~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~ 339 (710)
.+. ...|+... +. ..+..+...|++++|+..|+.+.+.+.. |+..
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a---------------------------- 274 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA---------------------------- 274 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH----------------------------
Confidence 543 12222211 11 1123344556666777776666655421 2211
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005174 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS-------IITWNSMLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 340 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
...+...|...|++++|...|+++.+.+ ...+..+..++...|++++|..+++.+...
T Consensus 275 --------~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 275 --------QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred --------HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 1113345555556666666555543321 123444555666777777777777776654
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=1.1e-11 Score=124.04 Aligned_cols=462 Identities=13% Similarity=0.111 Sum_probs=304.6
Q ss_pred HHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHH
Q 005174 183 KACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEA 259 (710)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 259 (710)
++.....+.+.|+.++......++.+...|.+| ++..-++.|..+++...+ .+...|-+-...=-.+|+.+..
T Consensus 384 KaAVelE~~~darilL~rAveccp~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECCPQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhccchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 333444555556666666665555555555443 344556666666655533 3555665555555556666666
Q ss_pred HHHHHH----HHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCChHHHHHHH
Q 005174 260 FQLFVE----MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD--SVATVIGLGACSHVGALKLGKEIH 333 (710)
Q Consensus 260 ~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~t~~~~l~~~~~~~~~~~a~~i~ 333 (710)
.+++.+ +...|+..+...|-.=...|-..|..-.+..+.......|+.-. ..|+...-..|.+.+.++.++.++
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 666543 23445555555555544555555555555555554444443322 233444444444444444444444
Q ss_pred ----------------------------------HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh
Q 005174 334 ----------------------------------GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSI 376 (710)
Q Consensus 334 ----------------------------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 376 (710)
..++... +-....|-....-+-..|++..|+.++.+.-+ .+.
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse 618 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE 618 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence 4444332 22223344444445556777777777665543 244
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhh
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 456 (710)
..|-+-+.....+.+++.|..+|.+.... .|+...|..-+..-.-.++.++|.++++..++. ++.-...|-.+.+.
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHH
Confidence 56777777777788888888888777654 567767766666666677888888888887776 46666777778888
Q ss_pred hhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHH
Q 005174 457 YARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533 (710)
Q Consensus 457 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 533 (710)
+-..++++.|.+.|..=.+ | .+..|-.+...--+.|+.-+|..+|++.+-.+ +-|...|...|..-.+.|+.++|.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHH
Confidence 8888888888887775543 2 45567777777777788888888888877654 225667888888888888888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.+..+..+. ...+...|..-|.+..+.++--+....+++.. -|..+.-+....+.....++.|...++++...+|+
T Consensus 774 ~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 774 LLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 888887775 33336677778888888777777777777765 35556666677788888999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCe
Q 005174 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660 (710)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 660 (710)
+..+|..+-.-+.+.|.-++-.+++++.... .+.+|..|.-+...
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKD 894 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhh
Confidence 9999999999999999999999998888753 34678888755443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=8.1e-13 Score=144.75 Aligned_cols=425 Identities=12% Similarity=0.004 Sum_probs=261.9
Q ss_pred HccCChhHHHHhHhhCCCCCCcc---HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH---HHHHcccCCchH
Q 005174 120 ASFSLYNNACFLVENSNIRYPLP---WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV---LKACGEMMDVDF 193 (710)
Q Consensus 120 ~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~ 193 (710)
.+.|++..|+..|++..+.++.+ ...++..+...|+.++|+..+++.. .|+...+..+ ...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555544322221 2244445555555555555555544 2222222211 223444455555
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh--CCChHHHHHHHHHHHHcCC
Q 005174 194 GRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS--KGLWKEAFQLFVEMQEEGV 271 (710)
Q Consensus 194 a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~ 271 (710)
|..+++.+....+.+...+..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 55555555533444555566777778888888899888888865433322223334443 555656888898888753
Q ss_pred CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHH
Q 005174 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351 (710)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 351 (710)
+-+...+..+..++.+.|-...|+++..+-. +-++-..... + -.......++.+..++..- .
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~-------l--~~~~~a~~vr~a~~~~~~~-~-- 261 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQ-------L--ERDAAAEQVRMAVLPTRSE-T-- 261 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHH-------H--HHHHHHHHHhhcccccccc-h--
Confidence 2245666777788888888888887766532 2111100000 0 0000011111111110000 0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 005174 352 ITMYSRCKDLRHAYILFKMTAE-----KSI-----ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~-----~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 421 (710)
.+.--.+.|..-++.+.. |.. ...--.+.++...|++.++++.|+.|...|.+....+-..+.++|
T Consensus 262 ----~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 262 ----ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ----hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 000012223322222221 111 112234667888889999999999999888765566788888999
Q ss_pred hccCchHHHHHHHHHHHHhCC----CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCCh------------------h
Q 005174 422 ARVANLQHGKEFHCYILRRAM----FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE------------------V 479 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------~ 479 (710)
...+.+++|..++..+....+ .+++......|.-+|...+++++|..+++.+.+..+ .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 999999999999998876541 133444467888889999999999999998875211 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
.+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++... .+.|+ .......+..
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHH
Confidence 34456778889999999999999998752 4467778888888999999999999997765 35887 7778888999
Q ss_pred HHhcCCHHHHHHHHHhC
Q 005174 559 YGRAGLLNKAKEIITKM 575 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m 575 (710)
+...|++++|..+.+..
T Consensus 494 al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 494 AMALQEWHQMELLTDDV 510 (822)
T ss_pred HHhhhhHHHHHHHHHHH
Confidence 99999999998888766
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=2e-11 Score=122.19 Aligned_cols=541 Identities=14% Similarity=0.094 Sum_probs=407.5
Q ss_pred ccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCC---CCCccHHHHHHHHHhCCCchHHHHH
Q 005174 86 KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI---RYPLPWNLLISLYVRDGFYAEALCV 162 (710)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~l 162 (710)
..+++..|+-++..+.+.+ +.++..|-+-...=-..|++..|..+..+--+ ++...|-.- ++....+.|..+
T Consensus 263 dl~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred cHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHH----HhcCChHHHHHH
Confidence 3467888888998888887 66666776666666677888888877654322 222223222 233445555555
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CC
Q 005174 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RD 239 (710)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 239 (710)
.-...+. -|+.. ..-+.+.--..+...-..+++....-++.++..|-..+. ....+.|.-++.+..+ .+
T Consensus 338 vA~Avr~--~P~Sv--~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVe----lE~~~darilL~rAveccp~s 409 (913)
T KOG0495|consen 338 VANAVRF--LPTSV--RLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVE----LEEPEDARILLERAVECCPQS 409 (913)
T ss_pred HHHHHHh--CCCCh--hhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHh----ccChHHHHHHHHHHHHhccch
Confidence 5554442 23322 223333333333444456666666667888888876654 4566668888887744 24
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCChhHHHH
Q 005174 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR----MRTQETYLDSVATVI 315 (710)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~t~~~ 315 (710)
...|. ++++..-++.|.++++..++. ++-+...|.+-...=-.+|+.+.+..++.+ +...|+..+..-|..
T Consensus 410 ~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 44454 566677789999999999876 777888998888888899999999988765 456799999999988
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcC
Q 005174 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYE--NVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLD 390 (710)
Q Consensus 316 ~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 390 (710)
-..+|-..|..-.++.|...++..|++... .+|..-...+.+.+.++-|+.+|....+ .+...|......--..|
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC
Confidence 889999999999999999999998886543 5678888889999999999999987654 35678888887777889
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHH
Q 005174 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470 (710)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 470 (710)
-.+....+|++.... ++-....+.......-..|++..|+.++..+.+.. +.+..+|-+-+........++.|..+|
T Consensus 565 t~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred cHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 999999999999887 23334455555556667899999999999999986 567889999999999999999999999
Q ss_pred hhcC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 005174 471 DLMS--RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547 (710)
Q Consensus 471 ~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 547 (710)
.+.. .++...|.--+...--.++.++|++++++.++. -|+ ...|..+.+-+-..++++.|...|..=.+ .-|
T Consensus 642 akar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP 716 (913)
T KOG0495|consen 642 AKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCP 716 (913)
T ss_pred HHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCC
Confidence 9876 457778887777778889999999999998874 566 45677777888889999999998876543 467
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC----------
Q 005174 548 Q-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN---------- 614 (710)
Q Consensus 548 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---------- 614 (710)
+ +..|-.|.+.=-+.|.+-+|..++++.. .+.+...|-..|..-.++|+.+.|+....++++-.|.+
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 6 7788889999999999999999999884 44588999999999999999999999999988877764
Q ss_pred --------------------CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeE
Q 005174 615 --------------------SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654 (710)
Q Consensus 615 --------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 654 (710)
+......+.++-...+++.|.+.+.+....+. ..|..|
T Consensus 797 e~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~w 854 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAW 854 (913)
T ss_pred ccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHH
Confidence 44555666667777777777777766554333 344444
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.1e-13 Score=131.93 Aligned_cols=464 Identities=13% Similarity=0.089 Sum_probs=309.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHHcccCCchHHHHHHHHHH-hcCCC----hHHHHHHHHHHH
Q 005174 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS-VLKACGEMMDVDFGRVVHSCID-ACHEW----SLFVHNALVSMY 219 (710)
Q Consensus 146 li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~-~g~~~----~~~~~~~li~~~ 219 (710)
|.+-|..+....+|+..|+-+.+...-|+.-.+.. +-+.+.+.+++..|..++++.. .-... -..+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 45667778888999999999988877787765432 3355677888889999998877 22222 234556666678
Q ss_pred HhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH--------HHHHHHHHhcC
Q 005174 220 GKFGQVDVARRLFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW--------NTIAGGCLRTG 289 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--------~~li~~~~~~g 289 (710)
.+.|+++.|+..|+...+ |+..+--.|+-++.--|+.++..+.|.+|..--..||..-| ..|+.--.++.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 899999999999998854 66665444555566678999999999999765333332211 22222222221
Q ss_pred Ch-----------HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 005174 290 NF-----------KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358 (710)
Q Consensus 290 ~~-----------~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 358 (710)
.. ++++-.-..+..--+.|+-.. ..+-+.+.+..-....+..+.. -.-..-|.+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dle--i~ka~~~lk~ 432 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLE--INKAGELLKN 432 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhc
Confidence 11 111111111111112222110 0011111111110000001111 1122357899
Q ss_pred CCHHHHHHHHHhcCCCChhHH----HHHH-HHHHh-cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHH
Q 005174 359 KDLRHAYILFKMTAEKSIITW----NSML-SGYTH-LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432 (710)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~----~~li-~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 432 (710)
|+++.|.++++-...+|..+- |.|- --|.+ ..++..|-+.-...+... +-+....+.--+.....|++++|..
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 999999999887776654332 2222 22333 334666666555544332 2233333333333456789999999
Q ss_pred HHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
.+.+.+... ...+...-.+.-.+-+.|++++|++.|-++. ..+......+.+.|-...+...|++++.+.... +
T Consensus 512 ~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 999998875 3333334444556788999999999998765 457778888889999999999999999877653 4
Q ss_pred CCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 005174 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATL 587 (710)
Q Consensus 510 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 587 (710)
+.|+..++-|...|-+.|+-.+|.+.+-.-- ..-| +.++...|..-|....-+++|+.+|++.. ..|+..-|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 5567788889999999999999998876543 4445 48888889999999999999999999985 78999999999
Q ss_pred HHHH-HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 588 LGAC-QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 588 ~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
+..| ++.|++.+|...++......|.+......|+.+....|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9776 678999999999999999999999999999999888874
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1.1e-11 Score=128.95 Aligned_cols=538 Identities=10% Similarity=0.046 Sum_probs=348.5
Q ss_pred ccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhh---CCCCCCccHHHHHHHHHhCCCchHHHHH
Q 005174 86 KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN---SNIRYPLPWNLLISLYVRDGFYAEALCV 162 (710)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~l 162 (710)
..|+.+.|..++..+++.. +.+...|..|..+|-..|+.+++...+-. +.+.|..-|-.+..-..+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3489999999999999886 67788899999999999999999877644 4455666788888888899999999999
Q ss_pred HHHHHhCCCCCCcc-cHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHH----HHHHHHHhcCCHHHHHHHHhhcC
Q 005174 163 YKQMQSRRIRGDNF-TYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHN----ALVSMYGKFGQVDVARRLFDKML 236 (710)
Q Consensus 163 ~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~ 236 (710)
|.+..+. .|+.. .+--=...|-+.|+...|..-+..+. ...+.|..-.. ..+..|...++-+.|.+.++...
T Consensus 230 y~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 230 YSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998875 33332 22333455777888888888888777 33333333333 33555666777788888888875
Q ss_pred C--C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc----------------------eehHH----HHHHHH
Q 005174 237 E--R---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN----------------------VITWN----TIAGGC 285 (710)
Q Consensus 237 ~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------------~~~~~----~li~~~ 285 (710)
. . +...+|.++..|.+...++.+......+......+| ..+|+ -++-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 4 2 445688888889999999999888888766222221 11221 122233
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHH
Q 005174 286 LRTGNFKGVLELLSRMRTQETYL--DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363 (710)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 363 (710)
.+.+..+....+..-..+.++.| +...|.-+..++...|.+..|..++..+.......+..+|--+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 34444444444444455555333 4556788888999999999999999999888777778889999999999999999
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH--------cCCCCcHHHHHHHHHHHhccCchHHHHH
Q 005174 364 AYILFKMTAEK---SIITWNSMLSGYTHLDCAEESAFLFREMFR--------SGVEPNYVTIASILPLCARVANLQHGKE 432 (710)
Q Consensus 364 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 432 (710)
|...|+.+... +...--+|-..+.+.|+.++|++.+..+.. .+..|+..........+...|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999887653 334445566678889999999999988642 2345555555566666777777666554
Q ss_pred HHHHHHHhCC----C-----------------CCchHHHhHHhhhhhhcCChhHHHHHHhh--------cCCCChh----
Q 005174 433 FHCYILRRAM----F-----------------NEHLLLWNSLVEMYARSGKVPEAKSVFDL--------MSRRDEV---- 479 (710)
Q Consensus 433 ~~~~~~~~~~----~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~---- 479 (710)
+-..++.... + +........++.+-.+.++......-... ...-...
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 4444332210 0 01111122222222233222211111110 0011122
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChH--HH-HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---hhH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQI--KPDHV--TM-VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ---LEH 551 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 551 (710)
.+.-++.++++.+++++|+.+...+..... .++.. .+ ...+.++...+++..|...++.|...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 234567788999999999999988876432 22221 22 33455667889999999999999877555433 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGA--CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
|++..+.+.+.|+-.--.+++... ...|+......++.+ ....+.+.-|...+-.+....|++|-.-.|++-++.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 666666666666544444444443 223333222222222 234455666889999999999999998888887765
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.8e-12 Score=121.82 Aligned_cols=237 Identities=11% Similarity=0.091 Sum_probs=161.8
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
+.+++..+|.++++-...+.|.+++++..+...+.+.. +|+.+|.+.+ +..++.+...|+...+.||.+++|++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~--aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYRE--AFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHH--hhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 44566677777777666777777777766666665555 6666665533 33346666667666667777777666
Q ss_pred HHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchH-H
Q 005174 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF-G 194 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a 194 (710)
+++.++.|+++.|++ .|++++.+|++.|+.|...+|..+|..+.+.++... +
T Consensus 280 L~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred HHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 666666666666543 456788899999999999999999999888887744 3
Q ss_pred HHHHHHHH---hc--C----CChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------C---hhHHHHHHHHHHhCC
Q 005174 195 RVVHSCID---AC--H----EWSLFVHNALVSMYGKFGQVDVARRLFDKMLER--------D---AVSWNTMISAYASKG 254 (710)
Q Consensus 195 ~~~~~~~~---~g--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g 254 (710)
..+...+. .| + +.|...+...+..|.+..+.+.|.++-.-+... + ..-|..+....|+..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 33333333 23 2 235566677788888888888888776555221 1 223455666677777
Q ss_pred ChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005174 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305 (710)
Q Consensus 255 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (710)
..+....+|+.|.-.-+-|+..+...++++..-.|.++-.-+++.+++..|
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 777888888888666666777777777777777777777777777777665
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.1e-14 Score=143.37 Aligned_cols=253 Identities=14% Similarity=0.120 Sum_probs=114.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH-HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC
Q 005174 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL-PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 461 (710)
...+.+.|++++|++++++......+|+...|-.++ ..+...++.+.|.+.+..+...+ +.++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccc
Confidence 344555666666666665443332233333333332 34445566677777777666655 3355566777776 6888
Q ss_pred ChhHHHHHHhhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHhhccCcHHHHHHHHHH
Q 005174 462 KVPEAKSVFDLMSR--RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 462 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (710)
++++|.+++...-+ ++...+..++..+...++++++..++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999888876643 466778888899999999999999999987632 345677788888889999999999999999
Q ss_pred HHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 539 MTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 539 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
..+. .|+ ......++..+...|+.+++.++++... .+.|...|..+..++...|+.+.|...++++.+.+|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9875 786 7888999999999999999888887662 234667888999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
.....+++++...|+.++|.+++...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987764
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.1e-11 Score=118.63 Aligned_cols=504 Identities=12% Similarity=0.070 Sum_probs=275.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHh--CCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCch-hhHHH
Q 005174 40 LLETLKDFAGRGNLSKAFEAFTRIRIT--AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL-VPKLV 116 (710)
Q Consensus 40 ~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 116 (710)
+-..+.--...|+-+.|+---++-... .+..+.....+..|..-|.......+|...++.+++...-|+... -..+.
T Consensus 165 ~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnig 244 (840)
T KOG2003|consen 165 FKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIG 244 (840)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeec
Confidence 444445555666666665433221111 122222111445556666666677788888888888776666543 34556
Q ss_pred HHHHccCChhHHHHhHhh----CCCCCCc----cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHccc
Q 005174 117 TFYASFSLYNNACFLVEN----SNIRYPL----PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188 (710)
Q Consensus 117 ~~~~~~g~~~~A~~~~~~----~~~~~~~----~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 188 (710)
+.|.+...+..|++.+.. ++.-+.. ..+.+-..+++.|.++.|+.-|+...+. .|+-.+-..|+-++...
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 777788888888877653 2322221 2344445677888888888888886653 46666555555555667
Q ss_pred CCchHHHHHHHHHH--hcCC-----------ChHHHHHHHHH-----HHHhc--CCHHHHHHHHhhcCCCChhH-HHHHH
Q 005174 189 MDVDFGRVVHSCID--ACHE-----------WSLFVHNALVS-----MYGKF--GQVDVARRLFDKMLERDAVS-WNTMI 247 (710)
Q Consensus 189 ~~~~~a~~~~~~~~--~g~~-----------~~~~~~~~li~-----~~~~~--g~~~~A~~~~~~~~~~~~~~-~~~li 247 (710)
|+.+..++.|..++ .|.. |+....|.-|. -.-+. .+.++++-.--++..|-..+ |.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa--- 399 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA--- 399 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---
Confidence 77777777777776 3432 22222221111 00000 11111111111111110000 00
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhH--HHHHHHHhhccCC
Q 005174 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA--TVIGLGACSHVGA 325 (710)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t--~~~~l~~~~~~~~ 325 (710)
. -.+-+++.+..-.-..+..+. --.-..-+.++|+++.|+++++-.....-+.-... -..++.....-.+
T Consensus 400 -----~-g~dwcle~lk~s~~~~la~dl--ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~ 471 (840)
T KOG2003|consen 400 -----A-GCDWCLESLKASQHAELAIDL--EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKD 471 (840)
T ss_pred -----c-ccHHHHHHHHHhhhhhhhhhh--hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccc
Confidence 0 011122222111110000010 01123357788999999999988876643322221 2222333333345
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHhcCChHHHHHHHHHH
Q 005174 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM---LSGYTHLDCAEESAFLFREM 402 (710)
Q Consensus 326 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m 402 (710)
+..+.+.-+..+...- .+......-.+.-...|++++|...+++....|...-.+| .-.+-..|+.++|++.|-++
T Consensus 472 ~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 472 FADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred hhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 6666666555443221 1111111111223345788888888887776655433222 23456678888888887766
Q ss_pred HHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChh
Q 005174 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEV 479 (710)
Q Consensus 403 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~ 479 (710)
..- +.-+...+..+.+.|....+...|.+++...... ++.|+.+...|.+.|-+.|+-..|.+..-.--+ .|..
T Consensus 551 h~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie 627 (840)
T KOG2003|consen 551 HAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIE 627 (840)
T ss_pred HHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchH
Confidence 432 2334555666666777777777777776665554 567777778888888888877777665543221 2566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh-hccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC-SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 558 (710)
+..-|..-|....-+++|+.+|++..- ++|+..-|..++..| .+.|++..|..+++....+ +..+.++...|+..
T Consensus 628 ~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri 703 (840)
T KOG2003|consen 628 TIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 666666667777777777777776543 577777777666655 4567777777777776654 44556666666666
Q ss_pred HHhcCC
Q 005174 559 YGRAGL 564 (710)
Q Consensus 559 ~~~~g~ 564 (710)
+...|.
T Consensus 704 ~~dlgl 709 (840)
T KOG2003|consen 704 AGDLGL 709 (840)
T ss_pred hccccc
Confidence 666553
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=7e-11 Score=122.45 Aligned_cols=517 Identities=12% Similarity=0.030 Sum_probs=304.7
Q ss_pred HHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCC----CccHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 005174 96 LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY----PLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 171 (710)
++..+...|+.|+..+|.++|.-|+..|+++.|- +|.-|.-++ -..++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4566677899999999999999999999999998 888876443 346899999988888887775
Q ss_pred CCCcccHHHHHHHHcccCCchHHHHHHH---HHH-----hcCC--------------ChHHHHHHHHHHHHhcCCHHHHH
Q 005174 172 RGDNFTYPSVLKACGEMMDVDFGRVVHS---CID-----ACHE--------------WSLFVHNALVSMYGKFGQVDVAR 229 (710)
Q Consensus 172 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~---~~~-----~g~~--------------~~~~~~~~li~~~~~~g~~~~A~ 229 (710)
.|.+.||..|+.+|+..||+..-..+-+ .+. .|.. ........++....-.|-++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998764322222 221 1211 11111123344445567788888
Q ss_pred HHHhhcCCCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 005174 230 RLFDKMLERD-AVSWNTMISAYASKGLWKEAFQLFVEMQEEGV-EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307 (710)
Q Consensus 230 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 307 (710)
+++..+|... ....-.+++-+..... ...++....+. +. .|+..+|.+++..-..+|+.+.|..++.+|++.|..
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~nt--pvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNT--PVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCc--hHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 8887776421 0011112444433332 22333333322 22 589999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005174 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387 (710)
Q Consensus 308 p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 387 (710)
.+.+.|..++-+ .++....+.+..-|...|+.|+..++...+-.+.++|....+....+.-.--....+..+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 999999888866 78888999999999999999999998877777766555333222111100011122333333322
Q ss_pred hcCCh-----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC--CCCchHHHhHHhhhhhhc
Q 005174 388 HLDCA-----EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM--FNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 388 ~~g~~-----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~ 460 (710)
.+.+. .-....+++..-.|+......|..... ....|.-+...++-..+..-.. -..++..+..++.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr----- 387 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR----- 387 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH-----
Confidence 12221 122233333333344433333322222 2225555555555554432110 1112223333333
Q ss_pred CChhHHHHHHhhcCCCChh-HHHHHHHHHHh---cCChHHHHHHHHHHH------------H----CCCCC-------Ch
Q 005174 461 GKVPEAKSVFDLMSRRDEV-TYTSLIAGYGI---QGEGRVALKLFEEMN------------K----NQIKP-------DH 513 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~------------~----~g~~p-------~~ 513 (710)
..|.++..+... .++ .-.+... .....+..++....+ . ....| -.
T Consensus 388 -------qyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 388 -------QYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred -------HHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 333333333211 111 1111111 111111111111110 0 00111 11
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-----YTPTSAMWATLL 588 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~l~ 588 (710)
..-+.++..|.+.-+..+++..-+..... .-| ..|..||+.+......++|..+.++.. ..-|..-+..+.
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~--lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDL--LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 12234444555555555555444433321 122 568999999999999999999999885 222344566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhh---CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcC
Q 005174 589 GACQIHRNTGIGEWAAEKLLET---RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 648 (710)
+...+++....+...++...+. .|........+.+..+..|+-+...++.+-+...|+.-
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 7777777776666666655542 23334556677777888899888888888888888754
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.3e-09 Score=105.36 Aligned_cols=447 Identities=12% Similarity=0.062 Sum_probs=213.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005174 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222 (710)
Q Consensus 143 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~ 222 (710)
|-...+--...+++..|..+|++...-. .-+...|..-+..=.+...+..|+.+++..+.-+|.--..|-..+.+=-..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 3333333344555666666666665421 112222222233333444555555555555533333334444444444445
Q ss_pred CCHHHHHHHHhhc--CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHH
Q 005174 223 GQVDVARRLFDKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300 (710)
Q Consensus 223 g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (710)
|++..|.++|++- -+|+...|++.|..=.+-+.++.|..++++..- +.|++.+|--....=.+.|+...+..+|..
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5566666666554 235555566666555555555566666555543 345555555555555555555555555555
Q ss_pred HHhC-CC-CCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 005174 301 MRTQ-ET-YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY-ENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377 (710)
Q Consensus 301 m~~~-~~-~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 377 (710)
..+. |- ..+...|.+....-.+...++.+.-++...+.+-.... ...|..+...--+.|+........-.
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~------- 305 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG------- 305 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh-------
Confidence 4432 10 00011111111111222334444444444443321111 12222222222222332221111100
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCch--HHHhHHhh
Q 005174 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL--LLWNSLVE 455 (710)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~ 455 (710)
+-.--++.+++.+ +.|-.++--.+..-...|+.+..++++..++.+- +|-. ..|.-.|-
T Consensus 306 ----------------KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 306 ----------------KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIY 366 (677)
T ss_pred ----------------hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHH
Confidence 0000122222221 3344445555555555555666666665555542 3311 11111111
Q ss_pred hh--------hhcCChhHHHHHHhhcCCC---Chh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 005174 456 MY--------ARSGKVPEAKSVFDLMSRR---DEV----TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520 (710)
Q Consensus 456 ~~--------~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 520 (710)
.. ....+++.+.++|+...+- ... .|-.......++.+...|.+++...+ |.-|-..+|...|
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YI 444 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHH
Confidence 11 1245566666666554421 222 23333333445566666666666654 4566666676666
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcC
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTP----TSAMWATLLGACQIHR 595 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~l~~~~~~~g 595 (710)
..-.+.+.++....++++..+ ..|. ..+|.-....=...|+.+.|..+|+-.-..| -...|.+.|..-...|
T Consensus 445 elElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~ 521 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEG 521 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcc
Confidence 666666677777777776664 3554 5566666666666677777777776553333 2445666666666667
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005174 596 NTGIGEWAAEKLLETRPENSGYYVLIANM 624 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 624 (710)
.++.|...++.+++..+... .|...+.-
T Consensus 522 E~ekaR~LYerlL~rt~h~k-vWisFA~f 549 (677)
T KOG1915|consen 522 EFEKARALYERLLDRTQHVK-VWISFAKF 549 (677)
T ss_pred hHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence 77777777777766655432 44444443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.2e-12 Score=128.88 Aligned_cols=273 Identities=14% Similarity=0.065 Sum_probs=208.1
Q ss_pred CHHHHHHHHHhcCCC--Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 360 DLRHAYILFKMTAEK--SI-ITWNSMLSGYTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 360 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
+..+|...|...+.. |+ .....+..+|...+++++|.++|+...+.. ..-+...|.+++-.+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886542 33 445667888999999999999999987753 122456777777654321 222222
Q ss_pred H-HHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 005174 435 C-YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD---EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510 (710)
Q Consensus 435 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 510 (710)
. .++.. -+..+.+|.++.++|.-+++.+.|.+.|++..+-| ..+|+.+..-+.....+|.|...|+..+. +.
T Consensus 410 aq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 410 AQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2 23333 36668889999999999999999999999888654 45788888888888899999999998864 34
Q ss_pred CCh-HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHH
Q 005174 511 PDH-VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWAT 586 (710)
Q Consensus 511 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ 586 (710)
|.. ..|-.+...|.+.++++.|+-.|+++. .+.|. .....++...+-+.|+.|+|++++++.- .. .|+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 433 356667778899999999999999887 47887 7777888889999999999999999873 22 35555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+..+...+++++|...++.+.++.|++...|..++.+|.+.|+.+.|+.-+..+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 666677778889999999999999999999999999999999999999877666654
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=3.5e-12 Score=128.62 Aligned_cols=246 Identities=11% Similarity=0.093 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-CchHHHhHHhhhhhhcCChhHHHHHH
Q 005174 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN-EHLLLWNSLVEMYARSGKVPEAKSVF 470 (710)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 470 (710)
..+|+..|.....+ +.-+......+-.+|...+++++++.+|+.+.+..+.. .+..+|.+.+--+-+.=.+.---+-+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45556666553332 22223444445556666666666666666665543221 23444444442222111111111111
Q ss_pred hhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-
Q 005174 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ- 548 (710)
Q Consensus 471 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 548 (710)
-.+....+.+|-++.++|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ++.|.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rh 488 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRH 488 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchh
Confidence 111223455666666666666666666666666554 344 34455555444555555666666665543 22222
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
-..|.-+.-.|.+.++++.|+-.|++. .+.| +.+..-.+...+.+.|+.++|.+.++++.-++|.++-.-+..+.++.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 222223445556666666666666555 2444 33333444444555566666666666666666666666666666666
Q ss_pred hcCCchHHHHHHHHHHh
Q 005174 627 ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~ 643 (710)
..|++++|.+.++++++
T Consensus 569 ~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE 585 (638)
T ss_pred hhcchHHHHHHHHHHHH
Confidence 66666666666655544
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=6.8e-09 Score=100.56 Aligned_cols=412 Identities=13% Similarity=0.117 Sum_probs=266.8
Q ss_pred ccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCC--CCC-ccHHHHHHHHHhCCCchHHHHH
Q 005174 86 KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI--RYP-LPWNLLISLYVRDGFYAEALCV 162 (710)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~l 162 (710)
..+++..|.++++.++... ..+..+|-..+.+=.++..+..|+.+|+.... |-+ -.|-..+-.--..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4566777888888877665 55666777777777777888888888876431 111 1244455555566888888888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----
Q 005174 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER---- 238 (710)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 238 (710)
|++-.+ ..|+...|.+.++.=.+...++.|+.+++...... |++..|-.....=-++|....|..+|+...+.
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 887665 57888888888888777788888888888776322 77888877777777888888888888776432
Q ss_pred --ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc--eehHHHHHHHHHhcCChHHHHHHH--------HHHHhCCC
Q 005174 239 --DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN--VITWNTIAGGCLRTGNFKGVLELL--------SRMRTQET 306 (710)
Q Consensus 239 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~--------~~m~~~~~ 306 (710)
+...+++...-=.+...++.|.-+|.-..+. ++.+ ...|......=-+.|+.....+.. +.+... -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-N 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-C
Confidence 2223444444444556677777777766654 2222 233444444434455544443332 222222 2
Q ss_pred CCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhH-HHHHH--------HHHHhcCCHHHHHHHHHhcCC---C
Q 005174 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV-RNALI--------TMYSRCKDLRHAYILFKMTAE---K 374 (710)
Q Consensus 307 ~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~-~~~li--------~~~~~~g~~~~A~~~~~~~~~---~ 374 (710)
+.|-.++.-.+..-...|+.+...++++..+..-.+..... |.-.| ---....+.+.+.++|+...+ .
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH 398 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc
Confidence 33455666666666677888888888877776543322211 11111 111345677777777765433 2
Q ss_pred ChhH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHH
Q 005174 375 SIIT----WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 375 ~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
...| |-.....-.++.+...|.+++...+ |.-|-..+|..-|..=.+.+.++.++.++.+.+.-+ |.+..+|
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W 474 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAW 474 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHH
Confidence 2233 3333333456677778887776655 557888888888887788888888888888888875 6667777
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMSR-R----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (710)
......-...|+.+.|..+|+-..+ | ....|-+.|..-...|.+++|..+|+++++.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 7777777788888888888886553 3 3456777777777788888888888888774
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.8e-10 Score=108.91 Aligned_cols=213 Identities=11% Similarity=0.077 Sum_probs=166.8
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 523 (710)
+.++..+.+-|+-.++.++|...|++..+- ....|+.|.+-|...++...|++-+++..+-. +-|-..|-.|.++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 445666677777778888888888877654 35678889999999999999999999988742 33677899999999
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a 600 (710)
.-.+...-|+-+|++... ++|+ ...|.+|.++|.+.++.++|++-|.+.- ..-+...+..|...+.+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999998874 6776 8899999999999999999999998873 233557888889999999999999
Q ss_pred HHHHHHHHh-------hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcc
Q 005174 601 EWAAEKLLE-------TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673 (710)
Q Consensus 601 ~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 673 (710)
...+++.++ .+|+...+..-|+.-+.+.++|++|......... ..+.
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--------------------------~~~e 539 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK--------------------------GETE 539 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc--------------------------CCch
Confidence 999988877 3444455566688888999999999886444321 2456
Q ss_pred hhhHHHHHHHHHHHHH
Q 005174 674 AQEIYPLLGGLTELMK 689 (710)
Q Consensus 674 ~~~~~~~l~~l~~~~~ 689 (710)
.++...++.++++.|.
T Consensus 540 ~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 540 CEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 6777777777777663
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=8.2e-11 Score=121.29 Aligned_cols=224 Identities=11% Similarity=-0.013 Sum_probs=139.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchH
Q 005174 352 ITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428 (710)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 428 (710)
...+...|+++.|...++...+ .+......+...|.+.|++++|..++..+.+.+..++.. +..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH----------
Confidence 4556666777777777666543 244566667777777777777777777777765432221 11000
Q ss_pred HHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505 (710)
Q Consensus 429 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (710)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..
T Consensus 229 ------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 229 ------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred ------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00112222222233344555555555542 356667777777777788888888877777
Q ss_pred HCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 005174 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAM 583 (710)
Q Consensus 506 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 583 (710)
+. .||.... ++.+....++.+++.+..+...+. .|+ ...+.++...+.+.|++++|.+.|+.. ...|+...
T Consensus 291 ~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 291 KR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred hc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 63 4444211 223334457777788777777764 555 556777788888888888888888776 35677777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETR 611 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 611 (710)
+..|...+...|+.++|.+.+++.+.+.
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 7777778888888888888887776653
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.9e-10 Score=110.37 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=171.6
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHH
Q 005174 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALK 499 (710)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 499 (710)
-.|+.-.+.+-++.++... +.+...|--+..+|....+.++....|++..+ .|+.+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3577888888888888875 33344477778889999999999999998764 367788888888888899999999
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005174 500 LFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-P 576 (710)
Q Consensus 500 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 576 (710)
=|++.+. +.|+ ...|.-+--+..+.+.++++...|++.+++ -|+ +++|+.....+...+++++|.+.|+.. .
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999987 4554 456666666667889999999999999986 355 889999999999999999999999976 2
Q ss_pred CCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 577 YTPT---------SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 577 ~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..|+ ..+-.+++ ..+..+|+..|+..++++++++|.....|..|+.+....|+.++|++++++-.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333 22222222 23345999999999999999999999999999999999999999999988654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.2e-09 Score=102.69 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChh
Q 005174 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 464 (710)
-|.-.++.++|+..|++.++.+ +-....++.+-+-|....+...|.+.++.+++-+ +.|-..|-.|.++|.-.+...
T Consensus 339 YYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchH
Confidence 3333444444444444444332 1111223333333444444444444444444432 444444444555555444444
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 465 EAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 465 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+-+.++..+|.+.|++..+
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444331 144455555555555555555555555444433 12334444444444444555555444444433
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=1.5e-10 Score=119.28 Aligned_cols=275 Identities=10% Similarity=0.016 Sum_probs=207.2
Q ss_pred cCCHHHHHHHHHhcCCC--Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhccCchHHHHH
Q 005174 358 CKDLRHAYILFKMTAEK--SI-ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA--SILPLCARVANLQHGKE 432 (710)
Q Consensus 358 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 432 (710)
.|+++.|++.+....+. +. ..|-.......+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888888765543 22 23323334447889999999999998765 55554333 33457778899999999
Q ss_pred HHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCCh-----------hHHHHHHHHHHhcCChHHHHHHH
Q 005174 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE-----------VTYTSLIAGYGIQGEGRVALKLF 501 (710)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~ 501 (710)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998875 67788899999999999999999999988875421 13444444444555666777777
Q ss_pred HHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 005174 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP- 579 (710)
Q Consensus 502 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 579 (710)
+.+.+. .+.+......+..++...|+.++|..++++..+. .|+.... ++......++.+++.+.+++. +..|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 776543 3457778888999999999999999999988763 4554222 233334569999999999877 3445
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
|...+.++...|...+++++|...++.+++.+|++ ..|..++.++.+.|+.++|.+.+++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55667788899999999999999999999999975 5578999999999999999999886543
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.5e-09 Score=106.10 Aligned_cols=260 Identities=12% Similarity=0.017 Sum_probs=207.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
+...-....-+...+++.+..+++....+.. ++....+..-|..+...|+..+-..+-..+++. .|..+.+|-++..
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHH
Confidence 3344444555677889999999999988764 455555555566777777777766666777776 5788889999999
Q ss_pred hhhhcCChhHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRD---EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 532 (710)
-|.-.|+..+|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999877554 458999999999999999999999887663 222222333344457888999999
Q ss_pred HHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 005174 533 QKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--------YTP-TSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 533 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
.++|.... ++.|+ +..++-+.-+....+.+.+|...|+..- ..+ =..+|+.|..+|++.+.+++|..
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999886 67887 7778888878888899999999998652 111 23467888899999999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
.+++.+.+.|.++.+|..++-+|.-.|+++.|.+.+.+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987754
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=1.4e-07 Score=95.06 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=77.3
Q ss_pred HHhcccCchHhHHHHHHHHHHh-CCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHH
Q 005174 82 FCCGKVKALAQGKQLHACAIAL-GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160 (710)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 160 (710)
......+++...+..|+..+.. .+.....+|...+......|-++-+..++.+..+-++.+-+..|..+++.++.++|-
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 3334445555555555555443 233344556655655555566666666666655555555556666666666666666
Q ss_pred HHHHHHHhCC------CCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcC--CCh--HHHHHHHHHHHHhcCCHHHHHH
Q 005174 161 CVYKQMQSRR------IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWS--LFVHNALVSMYGKFGQVDVARR 230 (710)
Q Consensus 161 ~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~A~~ 230 (710)
+.+....... -+-+...|..+....++..+.-....+-.-+..|+ -+| ...|++|.+.|.+.|.++.|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6665554221 11122234333333333333222222222222222 122 2456666666666666666666
Q ss_pred HHhhcC
Q 005174 231 LFDKML 236 (710)
Q Consensus 231 ~~~~~~ 236 (710)
+|++..
T Consensus 270 vyeeai 275 (835)
T KOG2047|consen 270 VYEEAI 275 (835)
T ss_pred HHHHHH
Confidence 666653
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1e-09 Score=113.91 Aligned_cols=225 Identities=9% Similarity=-0.058 Sum_probs=121.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 005174 351 LITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427 (710)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 427 (710)
....+...|+++.|...++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+.......-..+
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a------- 231 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA------- 231 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-------
Confidence 34555566666666666665543 24455566666677777777777777777666532222110000000
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEM 504 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (710)
+..++..-......+.....++...+ .+...+..+...+...|+.++|.+++++.
T Consensus 232 ----------------------~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 232 ----------------------EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred ----------------------HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11111111111223344444444442 36667777777788888888888888887
Q ss_pred HHCCCCCChHHH---HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-h--hHHHHHHHHHHhcCCHHHHHHHHHh--C-
Q 005174 505 NKNQIKPDHVTM---VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-L--EHFACMVDLYGRAGLLNKAKEIITK--M- 575 (710)
Q Consensus 505 ~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~--m- 575 (710)
.+. .||.... ..........++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.+.|+. .
T Consensus 290 l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 290 LKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC 364 (409)
T ss_pred Hhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh
Confidence 764 3443311 11111123345666666666666654 444 2 4455666666677777777776662 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 576 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 609 (710)
...|+...+..+...+.+.|+.+.|.+.+++.+.
T Consensus 365 ~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 365 KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666666666666666666666665543
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=2.9e-12 Score=126.17 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=60.8
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhh
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMS-----RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACS 524 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 524 (710)
..++..|.+.++++++.++++.+. ..+...|..+...+.+.|+.++|+..|++..+. .|+ ......++..+.
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 333444444444444444444322 123344444555555555555555555555542 332 334444555555
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
..|+.+++.++++...+. ...+...+..+..+|...|+.++|+..+++.- ..| |......+..++...|+.+.|..
T Consensus 192 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 555555555555555443 12223444555555555555555555555541 122 44444455555555555555555
Q ss_pred HHHHHH
Q 005174 603 AAEKLL 608 (710)
Q Consensus 603 ~~~~~~ 608 (710)
+.+++.
T Consensus 270 ~~~~~~ 275 (280)
T PF13429_consen 270 LRRQAL 275 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 554443
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.34 E-value=3.4e-09 Score=110.02 Aligned_cols=139 Identities=9% Similarity=0.068 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH-HHHH--HHhccCchHHHHHHH
Q 005174 361 LRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA-SILP--LCARVANLQHGKEFH 434 (710)
Q Consensus 361 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~--~~~~~~~~~~a~~~~ 434 (710)
.+...+.++..++ .+...+..+...+...|+.++|.+++++..+.. ||..... .++. .....++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 4455555555554 367778888888888888888888888888763 4433110 0111 112234445555555
Q ss_pred HHHHHhCCCCCch--HHHhHHhhhhhhcCChhHHHHHHhh--c--CCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 435 CYILRRAMFNEHL--LLWNSLVEMYARSGKVPEAKSVFDL--M--SRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503 (710)
Q Consensus 435 ~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~--~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (710)
+...+.. +.++ ....++...|.+.|++++|.+.|+. . ..|+...+..+...+.+.|+.++|.++|++
T Consensus 323 e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 323 EKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544442 2222 3444444444444444444444441 2 123333344444444444444444444443
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=6.7e-07 Score=90.41 Aligned_cols=93 Identities=9% Similarity=0.061 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHHh-CCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 37 RINLLETLKDFAGRGNLSKAFEAFTRIRIT-AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
+++|..-+..+..+|+...-...|.....+ .+..... .+...+.-....+-++.+..+++..++.. +..-+-.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~r--IW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDR--IWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEY 175 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhcc--chHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHH
Confidence 345555556666777777777777766554 2223333 56666666666667777777777777653 3335666
Q ss_pred HHHHHccCChhHHHHhHhhC
Q 005174 116 VTFYASFSLYNNACFLVENS 135 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~~ 135 (710)
|..+++.+++++|.+.+...
T Consensus 176 ie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred HHHHHhccchHHHHHHHHHh
Confidence 77777788888877766553
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=5.8e-09 Score=99.49 Aligned_cols=285 Identities=15% Similarity=0.097 Sum_probs=156.5
Q ss_pred CChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005174 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368 (710)
Q Consensus 289 g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 368 (710)
|+|..|++++.+-.+.+-.| ...|.....+....|+.+.+.....++.+..-.++..+.-+........|+++.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555554444443222 22233444445555555555555555555433445555556666667777777776666
Q ss_pred Hhc---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC
Q 005174 369 KMT---AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445 (710)
Q Consensus 369 ~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (710)
++. ..++.........+|.+.|++.....++..|.+.|+--+...- ..
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------------------~l 227 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------------------RL 227 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------------------HH
Confidence 543 3456677777888888888888888888888888755443210 00
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 522 (710)
...+|+.+++-....+..+.-...|+...+ .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 112233333333333333333334444432 2444455555666666666666666666666655554 112223
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGACQIHRNTGIGE 601 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~g~~~~a~ 601 (710)
+.+.++...-.+..+...+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455555555555555555433333 44556666666666666666666644 35566666666666666666666666
Q ss_pred HHHHHHHh
Q 005174 602 WAAEKLLE 609 (710)
Q Consensus 602 ~~~~~~~~ 609 (710)
+..+..+.
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 65555543
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=8.1e-09 Score=95.41 Aligned_cols=157 Identities=12% Similarity=0.092 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH----HHHHHHHHH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAEKSI---ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV----TIASILPLC 421 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~ 421 (710)
..|..-|...|-+|.|+.+|..+.+.+. .+...|+..|-...+|++|++.-+++...|-.+..+ .|.-+....
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 4566778888889999999988776433 456667888999999999999988888876555433 233344444
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChh----HHHHHHHHHHhcCChHHH
Q 005174 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV----TYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A 497 (710)
....+++.|...+.+..+.+ +.++..--.+.+.+...|+++.|.+.++.+.+.|+. ....|..+|.+.|+.++.
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 191 LASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 45556666666666666654 444444445555555666666666666655544432 344455555666666666
Q ss_pred HHHHHHHHHC
Q 005174 498 LKLFEEMNKN 507 (710)
Q Consensus 498 ~~~~~~m~~~ 507 (710)
+..+.++.+.
T Consensus 269 ~~fL~~~~~~ 278 (389)
T COG2956 269 LNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHc
Confidence 6655555553
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.7e-08 Score=98.97 Aligned_cols=286 Identities=13% Similarity=0.046 Sum_probs=147.8
Q ss_pred ceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 005174 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353 (710)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 353 (710)
+......-..-+...+++.+..++.+...+.. ++....+..-|..+...|+...-..+-..+++. .|..+.+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 34444444555666677777777777776643 122222223333444444443333332222222 3445556666666
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 430 (710)
.|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+---|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 6767777777777776544322 246777777777777777777766655442 011111112222234555666666
Q ss_pred HHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 005174 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510 (710)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 510 (710)
.++|...... .|.|+.+.+-+.-.....+.+.+|...|+....+ .+..... ..
T Consensus 400 e~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e-~~ 452 (611)
T KOG1173|consen 400 EKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE-KI 452 (611)
T ss_pred HHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-cc
Confidence 6666665554 2555555555555555555555555555543210 0000000 00
Q ss_pred CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005174 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLG 589 (710)
Q Consensus 511 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 589 (710)
--..+++.|..+|.+.+.+++|...++..... ..-+..++.++.-.|...|+++.|.+.|.+. -..||...-..++.
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 12234555556666666666666666665542 2223555666666666666666666666554 34555555555554
Q ss_pred HH
Q 005174 590 AC 591 (710)
Q Consensus 590 ~~ 591 (710)
.+
T Consensus 531 ~a 532 (611)
T KOG1173|consen 531 LA 532 (611)
T ss_pred HH
Confidence 43
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=3.2e-09 Score=101.21 Aligned_cols=282 Identities=12% Similarity=0.054 Sum_probs=216.3
Q ss_pred hCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHH
Q 005174 49 GRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA 128 (710)
Q Consensus 49 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 128 (710)
..|+|.+|.++..+-.+.+..|-. .|..-..+....|+.+.+..+...+-+..-.++..+.-+........|+++.|
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l---~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVL---AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHH---HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 389999999999998888888765 67777788888999999999999888774356667778888889999999999
Q ss_pred HHhHhh---CCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHcccCCchHHHHHH
Q 005174 129 CFLVEN---SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-------FTYPSVLKACGEMMDVDFGRVVH 198 (710)
Q Consensus 129 ~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~ 198 (710)
+.-++. |...++.......++|.+.|++.....++..|.+.|+--|. .+|..+++-+...+..+.-+..+
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 988776 45677788899999999999999999999999999876554 36777787777777777666777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcee
Q 005174 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER--DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276 (710)
Q Consensus 199 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 276 (710)
+......+.++..-.+++.-+.++|+.++|.++..+..++ |.. -...-.+.+-++...-.+..+.-... .+-+..
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 7766666667777788888899999999999888777543 333 11223455667777777776665443 223446
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005174 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338 (710)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~ 338 (710)
.+.+|...|.+++.|.+|...|+...+ ..|+..+|..+-.++...|+...+.+.....+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 778888888888999999988886555 356777777777777777777777766665543
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=7.7e-10 Score=106.13 Aligned_cols=198 Identities=16% Similarity=0.102 Sum_probs=163.5
Q ss_pred CCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 005174 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520 (710)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 520 (710)
......+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 33456778888889999999999999987653 256678888899999999999999999998753 33456777788
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNT 597 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~ 597 (710)
..+...|++++|.+.++..... ...| ....+..+...+.+.|++++|.+.+++.- ..| +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 8889999999999999998864 2223 35677788999999999999999998872 233 466788888899999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+.|...++++.+..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999888888899999999999999999998887654
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=6.1e-08 Score=90.59 Aligned_cols=455 Identities=12% Similarity=0.053 Sum_probs=243.4
Q ss_pred HHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccC
Q 005174 44 LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS 123 (710)
Q Consensus 44 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 123 (710)
+.-+..+.++..|+.+++.-...+-.-... +-..+..++...|++++|...+..+.... .++..++..|...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~--~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDS--LQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHH--HHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 556677888888888887765443333323 44455666667777777777777666533 555666666666655566
Q ss_pred ChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHh
Q 005174 124 LYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203 (710)
Q Consensus 124 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 203 (710)
.+.+|..+-.+.+ +....+. .++...-+.++-+.-..+++.+.
T Consensus 106 ~Y~eA~~~~~ka~--k~pL~~R----------------------------------LlfhlahklndEk~~~~fh~~Lq- 148 (557)
T KOG3785|consen 106 QYIEAKSIAEKAP--KTPLCIR----------------------------------LLFHLAHKLNDEKRILTFHSSLQ- 148 (557)
T ss_pred HHHHHHHHHhhCC--CChHHHH----------------------------------HHHHHHHHhCcHHHHHHHHHHHh-
Confidence 6666665544322 1111111 12222223333333333333332
Q ss_pred cCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCceehHHH
Q 005174 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER--DAVSWNTM-ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280 (710)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 280 (710)
....---+|..+....-.+.+|++++.++... +-...|.- .-+|.+..-++-+.+++.-..+. ++-+...-|.
T Consensus 149 ---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NL 224 (557)
T KOG3785|consen 149 ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNL 224 (557)
T ss_pred ---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHH
Confidence 01122234444444445688899998888654 33344443 34677777777777777766554 4434455555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC
Q 005174 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360 (710)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 360 (710)
......+.=+-..|.+-.+++.+.+-.- | ..+.. +.++++ .-...
T Consensus 225 kacn~fRl~ngr~ae~E~k~ladN~~~~----~-------------~f~~~----l~rHNL--------------VvFrn 269 (557)
T KOG3785|consen 225 KACNLFRLINGRTAEDEKKELADNIDQE----Y-------------PFIEY----LCRHNL--------------VVFRN 269 (557)
T ss_pred HHHHHhhhhccchhHHHHHHHHhccccc----c-------------hhHHH----HHHcCe--------------EEEeC
Confidence 5544444333333444444444332110 0 00000 011100 00111
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005174 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440 (710)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 440 (710)
-+.|.+++-.+...=+.+--.++--|.+.++..+|..+.+++.- ..|-......+..+ ..|
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a--alG--------------- 330 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA--ALG--------------- 330 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH--Hhh---------------
Confidence 12333333222221112223344456677777777777666521 12322222222221 111
Q ss_pred CCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 005174 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515 (710)
Q Consensus 441 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 515 (710)
+-......+.-|...|+-.-.. ++.--.++..++.-..++++.+-.+..+..-=..-|.+.
T Consensus 331 --------------Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 331 --------------QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred --------------hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 1111112233344444433221 222344556666666677777777777665423333333
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL-GACQI 593 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~-~~~~~ 593 (710)
| .+..+.+..|.+.+|+++|-.+... .++ +..+| ..|..+|.++|+.+-|++++-++..+.+..+.-.+| +-|.+
T Consensus 397 ~-N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 397 L-NLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYK 473 (557)
T ss_pred h-HHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 3 4677888889999999999877542 222 33444 456788999999999999999987555565555555 66899
Q ss_pred cCChHHHHHHHHHHHhhCCC
Q 005174 594 HRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~ 613 (710)
.+.+--|.+++..+..++|.
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHhhhHHHccCCC
Confidence 99988899999999999885
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=9.4e-12 Score=85.30 Aligned_cols=50 Identities=36% Similarity=0.693 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHh
Q 005174 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287 (710)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 287 (710)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777766653
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.5e-07 Score=90.00 Aligned_cols=393 Identities=13% Similarity=0.000 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCC-ChHHHHHHHHHH-HHcCCCCceehHHHHHHHH
Q 005174 209 LFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKG-LWKEAFQLFVEM-QEEGVEVNVITWNTIAGGC 285 (710)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~ 285 (710)
...-...+..|-..++-+.|.....+.+.. ...--|.|+.-+.+.| +..++.--+.+. ++.-+. . ..|.+.
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~a--L----~~i~~l 170 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMA--L----QVIEAL 170 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchH--H----HHHHHH
Confidence 334445566777778888999988888764 3333444444333333 221222222222 111000 0 001111
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc--cCChHHHHHHHHHHHh-hcCCCchhHHHHHHHHHHhcCCHH
Q 005174 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH--VGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLR 362 (710)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~--~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 362 (710)
.+.+ +..+..-=..|-...+.|...+....+.+++. .++...+.+.+-.+.. .-++.++....++.+.|...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 1000 00001111122223344555555555554443 3343344444443333 345677788899999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005174 363 HAYILFKMTAEKSIITWNSM---LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439 (710)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (710)
+|...|++...-|+.+...| ...+.+.|+++....+...+.... +-+...|..-........+++.|..+-.+.++
T Consensus 250 ~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 250 QAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred HHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 99999998766554433332 334567888888888887776542 22223333333344456778888888888877
Q ss_pred hCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 005174 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS--RR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516 (710)
Q Consensus 440 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 516 (710)
.. +.+...+-.-...+...|++++|.-.|.... .| +..+|.-|+.+|...|++.+|..+-++..+. +..+..+.
T Consensus 329 ~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~L 405 (564)
T KOG1174|consen 329 SE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSL 405 (564)
T ss_pred cC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhh
Confidence 65 4555555555677788999999999998765 33 7889999999999999999999888776653 44456666
Q ss_pred HHHH-HHhh-ccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005174 517 VAVL-SACS-HSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGACQ 592 (710)
Q Consensus 517 ~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~ 592 (710)
..+. ..|. ....-++|..++++.. .+.|+ ....+.+...+.+.|..++++.++++. ...||...-+.|...++
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMR 482 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 6552 3332 2334578999998876 47899 788889999999999999999999987 46789999999999999
Q ss_pred hcCChHHHHHHHHHHHhhCCCCC
Q 005174 593 IHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 593 ~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
..+.+.+|...+..++.++|++-
T Consensus 483 A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HhhhHHHHHHHHHHHHhcCccch
Confidence 99999999999999999999873
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=3e-07 Score=95.12 Aligned_cols=128 Identities=16% Similarity=0.077 Sum_probs=106.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQ 592 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 592 (710)
|......+.+.+..++|...+.+... +.|- ...|......+...|..++|.+.|... ...| ++.+..++...+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44555667888889999888877764 5665 667787888999999999999988876 3556 4667788888899
Q ss_pred hcCChHHHHH--HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 593 IHRNTGIGEW--AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 593 ~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..|+...|.. .+..+++++|.+++.|..++.++.+.|+.++|.+.+........
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9999888888 99999999999999999999999999999999999987765443
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.1e-11 Score=83.51 Aligned_cols=50 Identities=44% Similarity=0.624 Sum_probs=46.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc
Q 005174 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525 (710)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 525 (710)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 63
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=3.4e-07 Score=96.75 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=120.8
Q ss_pred CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
+.++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|.-++..+.+.|.+++-.+++...+
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33444444433333 3457999999999999999999988654 267789999999999999999999998887
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 541 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
++ .-+|.+ =+.||-+|++.+++.+-.+++. -||..-......-|...|.++.|+-.+. +...|..
T Consensus 1161 kk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAK 1225 (1666)
T ss_pred Hh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHH
Confidence 76 556665 4578999999999999877765 3788888888888999999988776665 3455777
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 005174 621 IANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~ 640 (710)
|+..+...|.+..|..--++
T Consensus 1226 La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 88888888888777665433
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.5e-07 Score=92.06 Aligned_cols=217 Identities=13% Similarity=-0.008 Sum_probs=161.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhH
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (710)
+.-.|+.-.|...|+..+.....++.. |..+...|....+.++....|....+.+ +.++.+|..-.+++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHH
Confidence 445677888888888888765444332 6666777888888888888888888876 6667778888888888888999
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 005174 466 AKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 466 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 542 (710)
|..=|++...- ++..|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999887754 4556666666777788899999999988875 444566788888888888999999999988875
Q ss_pred hCCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 543 YGIFPQ---------LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 543 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
+.|+ +-+..+++-.-.+ +++..|.+++++.. ..| ....+.+|...-.+.|+.++|.+.+++...+
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred --hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444 1222233322233 78888999988873 444 4567888888888889998888888887765
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=7.2e-07 Score=89.54 Aligned_cols=245 Identities=11% Similarity=0.124 Sum_probs=144.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH---HHHhccCchHH--HHHH------------HHHHHHhCCCC
Q 005174 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL---PLCARVANLQH--GKEF------------HCYILRRAMFN 444 (710)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~--a~~~------------~~~~~~~~~~~ 444 (710)
|.-.+...|+..+|..++...+... .+|........ .+...-.++-. .... ...+... -.
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~--qk 306 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK--QK 306 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH--HH
Confidence 4445667788888888888887765 44442222211 12221111111 1111 1111111 01
Q ss_pred CchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCh--HHHHHH
Q 005174 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD-EVTYTSLIAGYG--IQGEGRVALKLFEEMNKNQIKPDH--VTMVAV 519 (710)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 519 (710)
.....-+.++.+|. +..+.+.++-....... ...+.+++.... +...+..|.+++...-+. .|+. ......
T Consensus 307 ~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 307 QAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHH
Confidence 11222344455544 44556666666655432 334444444332 223477888888877664 3443 344455
Q ss_pred HHHhhccCcHHHHHHHHH--------HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHH---
Q 005174 520 LSACSHSGLVVEGQKQFE--------RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-----YTPTSAM--- 583 (710)
Q Consensus 520 l~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~--- 583 (710)
+.-....|+++.|.+++. .+.+. +.. +.+..+++.+|.+.++.+-|..++.+.- ..+....
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 555678899999999998 44332 334 4456778888999888777777776541 1222233
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 584 -WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 584 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
|.-+...-.++|+.+.|...++.+.+.+|++....++++-+|++..- +.|..+
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~-eka~~l 513 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDP-EKAESL 513 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH-HHHHHH
Confidence 33333444678999999999999999999999999999999998753 555554
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=9.3e-09 Score=95.03 Aligned_cols=265 Identities=12% Similarity=0.033 Sum_probs=183.8
Q ss_pred CCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhC-CCCC--CchhhHHHHHHHccCChh
Q 005174 50 RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKN--PVLVPKLVTFYASFSLYN 126 (710)
Q Consensus 50 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~ 126 (710)
+++.+.|..+|-+|.+..+..- .+...|.+-+.+.|..+.|..+|+-+.++. +.-+ ..+.-.|..-|-..|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~---e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETF---EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhh---HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 6788999999999987533322 377788888999999999999999988753 1111 133445677788899999
Q ss_pred HHHHhHhhCCCCCCc---cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc----cHHHHHHHHcccCCchHHHHHHH
Q 005174 127 NACFLVENSNIRYPL---PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF----TYPSVLKACGEMMDVDFGRVVHS 199 (710)
Q Consensus 127 ~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~ 199 (710)
.|+.+|..+...+.. +...|+..|-...++++|+++-+++.+.+-++... -|--+...+....+.+.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999987764433 46678999999999999999999998876554433 23333444455667777777777
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCce
Q 005174 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV----SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275 (710)
Q Consensus 200 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 275 (710)
....-.+..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++...++..+.+. .++.
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~ 282 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA 282 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence 766444445555556677778888888888888888766543 4666777888888888888888887663 3344
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 005174 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321 (710)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~ 321 (710)
..-..+...-....-.+.|...+.+-... +|+...|..++....
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 44445544444444555555555544433 566666666666543
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=6.7e-10 Score=102.31 Aligned_cols=231 Identities=11% Similarity=0.088 Sum_probs=153.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh
Q 005174 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (710)
+.|..+|.+.|.+.+|...|+.-+.. .|-..||..+-.+|.+....+.|..++..-++. ++-++.....+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34556666666666666666665554 344445555555555555555555555555544 34444444555555555
Q ss_pred cCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHH
Q 005174 460 SGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
.++.++|.++++...+. |+.+..++..+|.-.++++-|+.+|+++...|+. +...|+.+.-+|.-.+.+|.++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666655432 4455555666677777777777777777777765 5666777776777777777766666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
++.... --.|+ + -..+|..|.......||+..|.+.++.++.-+|++.+
T Consensus 382 ~RAlst-at~~~------------------~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 382 QRALST-ATQPG------------------Q------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHHhh-ccCcc------------------h------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 665542 11111 1 2345666666667789999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.++.|+-+-.+.|+.++|..++....+...
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999999999888776443
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=1.2e-08 Score=104.63 Aligned_cols=231 Identities=18% Similarity=0.180 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHh-----CCCCCch-HHHhHHhhhhhhcCChhHHHHHHhhcCC-------C--
Q 005174 412 VTIASILPLCARVANLQHGKEFHCYILRR-----AMFNEHL-LLWNSLVEMYARSGKVPEAKSVFDLMSR-------R-- 476 (710)
Q Consensus 412 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 476 (710)
.|...+...|...|+++.|..++...++. |...+.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666777888888888888888777665 1112222 2334567788889999999888887752 1
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC-CChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhC--C
Q 005174 477 --DEVTYTSLIAGYGIQGEGRVALKLFEEMNK-----NQIK-PDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYG--I 545 (710)
Q Consensus 477 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 545 (710)
-..+++.|...|.+.|++++|...+++..+ .|.. |... .++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234778888889999999888887777554 1222 2222 456667778899999999999998876543 2
Q ss_pred CC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-
Q 005174 546 FP---Q-LEHFACMVDLYGRAGLLNKAKEIITKMP---------YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLET- 610 (710)
Q Consensus 546 ~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 610 (710)
.+ . ..+++.|..+|...|++++|.+++++.- ..+ ....++.|...|.+.++.+.|.+.+.....+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2 4679999999999999999999998771 122 2456778888999999988888888776654
Q ss_pred ---CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 611 ---RPEN---SGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 611 ---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
.|+. ..+|..|+.+|.+.|++++|.++.....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 5678999999999999999999977654
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.5e-06 Score=85.71 Aligned_cols=219 Identities=13% Similarity=0.091 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCC-CCCCchhhHHH
Q 005174 38 INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL-EKNPVLVPKLV 116 (710)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 116 (710)
..+.+-++-+..++++++|.....++...++.+.. .+-.-+-+....+.++.|..+ +...+. ..+.+.+ +=
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~---a~~cKvValIq~~ky~~ALk~---ikk~~~~~~~~~~~--fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDED---AIRCKVVALIQLDKYEDALKL---IKKNGALLVINSFF--FE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHh---hHhhhHhhhhhhhHHHHHHHH---HHhcchhhhcchhh--HH
Confidence 45566677788899999999999999887633322 455555566667777777633 333331 1111111 34
Q ss_pred HHHH--ccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH-cccCCchH
Q 005174 117 TFYA--SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC-GEMMDVDF 193 (710)
Q Consensus 117 ~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~ 193 (710)
.+|+ +.++.++|.+.++...+.+......-.+.+-+.|++++|+.+|+.+.+++.. .+..-+++- ...+....
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhh
Confidence 4454 7799999999999666666656667778889999999999999999876543 222222211 00000000
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCChh----------HHHHHHHHHHhCCC
Q 005174 194 GRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM--------LERDAV----------SWNTMISAYASKGL 255 (710)
Q Consensus 194 a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~~~~~g~ 255 (710)
+. +......-...+-..+-.....+...|++.+|+++++.. ...|.. .--.|.-.+...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 111111111111222222344566778888888888776 111110 11123334556777
Q ss_pred hHHHHHHHHHHHHc
Q 005174 256 WKEAFQLFVEMQEE 269 (710)
Q Consensus 256 ~~~a~~~~~~m~~~ 269 (710)
.++|..++......
T Consensus 240 t~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 240 TAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHh
Confidence 77777777777665
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.14 E-value=2.6e-06 Score=86.65 Aligned_cols=450 Identities=11% Similarity=0.027 Sum_probs=234.6
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHH
Q 005174 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232 (710)
Q Consensus 153 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (710)
.+++...+.+.+.+.+. ..-...|....--.+...|+.++|....+....+-..+.++|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 45666666666666552 22122233322222344566666665555555555556667776666666667777777777
Q ss_pred hhcC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 005174 233 DKML--ER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE-TYL 308 (710)
Q Consensus 233 ~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p 308 (710)
.... +| |...|.-+--.-++.|+++........+.+. .+.....|..+..++.-.|+...|..++++..+.. -.|
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 7663 23 5556666655566667777666666666553 22234566677777777777777777777776554 234
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch-hHHHHHHHH
Q 005174 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK--SI-ITWNSMLSG 385 (710)
Q Consensus 309 ~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~ 385 (710)
+...+.-..... --.....+.|.+++|.+.+...... |- ..--+....
T Consensus 178 s~~~~e~se~~L-----------------------------y~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 178 SKEDYEHSELLL-----------------------------YQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADL 228 (700)
T ss_pred CHHHHHHHHHHH-----------------------------HHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHH
Confidence 433332211110 0111223445555555544433321 11 112223344
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-cc-CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCCh
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA-RV-ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 463 (710)
+.+.++.++|..+++.++.. .||..-|.-.+..+. +. +..+....++......- +.....-..=+... ....+
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl-~~eel 303 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVL-NGEEL 303 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHh-Ccchh
Confidence 55666666666666666665 455555554444333 12 22222223333333221 10000000000000 00111
Q ss_pred hH-HHHHHhhcCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CC----------CCCChHH--HHHHHHHhhc
Q 005174 464 PE-AKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNK----NQ----------IKPDHVT--MVAVLSACSH 525 (710)
Q Consensus 464 ~~-A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g----------~~p~~~t--~~~ll~a~~~ 525 (710)
.+ ..+++..+.++ =+..+..+...|-.....+-..++...+.. .| -+|.... +..+...+-+
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 11 11222222222 222333343333322222111111111111 11 1455443 4456667788
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
.|+++.|..+++... +..|+ ++.|-.=..++...|.+++|..++++.. ..||...-.-...-..+.++.++|.+
T Consensus 384 ~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred cccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999887 46888 7788888889999999999999998874 33454443344444567788888988
Q ss_pred HHHHHHhhCCCC---------CchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 603 AAEKLLETRPEN---------SGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 603 ~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
++.++-+-+.+- .+.-.-=+.+|.+.|+|.+|++=+..+
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 888887654321 112223356788888888887754433
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=1.7e-05 Score=80.89 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 595 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.-.++|...+..+....+++...|..-..+|.+.|++.-|.+..+....
T Consensus 639 ~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 639 DPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred ChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456688888888888899999999999999999999999988776654
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=1.4e-08 Score=100.24 Aligned_cols=213 Identities=15% Similarity=0.013 Sum_probs=153.6
Q ss_pred CchHHHHHHHHHHHHhCCCCCc--hHHHhHHhhhhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHH
Q 005174 425 ANLQHGKEFHCYILRRAMFNEH--LLLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALK 499 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 499 (710)
+..+.+..-+..++......|+ ...|..+...|...|+.++|...|++..+ | +...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666777777755423333 45677888889999999999999988764 2 67789999999999999999999
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--
Q 005174 500 LFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-- 576 (710)
Q Consensus 500 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 576 (710)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999987 4565 567777888888999999999999998864 6764322233334456788999999996642
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLL-------ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 577 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..|+ .|.. .......|+...+ .+++.+. ++.|+.++.|..++.+|...|++++|...+++....++
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2233 2321 1222334555443 3444444 55667778999999999999999999999998876443
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=1.8e-08 Score=96.53 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhh
Q 005174 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458 (710)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (710)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+....+.. +.+...+..+...|.
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Confidence 3444445555555555555555554432 2223344444455555555555555555555543 334455666666666
Q ss_pred hcCChhHHHHHHhhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSRR-----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 533 (710)
..|++++|...|++..+. ....+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777665431 23456666777777888888888888777642 223456666777777788888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
.++++.... ...+...+..++..+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888877654 2223566667777777888888887776654
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=3.3e-08 Score=106.79 Aligned_cols=243 Identities=10% Similarity=-0.005 Sum_probs=172.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHh---------ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 391 CAEESAFLFREMFRSGVEPNYV-TIASILPLCA---------RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
..++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++++++.. +.+...+..+...+...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 356777788777765 44433 3333322222 2345788899999888875 66778888888899999
Q ss_pred CChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 461 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998764 3 4567888899999999999999999999884 45532 3333444566688999999999
Q ss_pred HHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 537 ERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 537 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
+++... ..|+ ...+..+..+|...|+.++|...++++. ..|+ ...++.+...+...|+ .+...++.+++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 998764 2465 5567788899999999999999999873 4454 3445555566666664 677778877765433
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+.....+..+|.-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 333344477777778887766655 666543
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.4e-06 Score=79.16 Aligned_cols=281 Identities=10% Similarity=-0.004 Sum_probs=198.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhH
Q 005174 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI-LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452 (710)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 452 (710)
.|+.....+...+...|+.++|+..|++.+.. .|+..+-.-+ .-.+.+.|+++....+-..+.... +.....|-.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhh
Confidence 47888889999999999999999999987654 4444331111 112346677777766666655432 223333333
Q ss_pred HhhhhhhcCChhHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCc
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSRRD---EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGL 528 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 528 (710)
-.......++++.|+.+-++..+.| +..|-.-...+...|++++|.-.|+..+. +.| +-..|..|+.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhch
Confidence 3444455678888888888777544 44444445678888999999999998876 454 56789999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 005174 529 VVEGQKQFERMTSIYGIFPQLEHFACMV-DLYG-RAGLLNKAKEIITKM-PYTPTS-AMWATLLGACQIHRNTGIGEWAA 604 (710)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 604 (710)
+.+|.-.-+..... +..+..+...+. ..+. .-..-++|.+++++. ...|+- ...+.+..-|...|..+.+...+
T Consensus 384 ~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 99988777766653 333455555442 3332 223457888988876 466764 35556667788889999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHH
Q 005174 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684 (710)
Q Consensus 605 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l 684 (710)
+..+...||+ ..+..|++++...+.+.+|++.+.... ..+|+++....-|++|
T Consensus 462 e~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--------------------------r~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 462 EKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL--------------------------RQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH--------------------------hcCccchHHHHHHHHH
Confidence 9999988865 667899999999999999998877654 3677888888888888
Q ss_pred HHHHH
Q 005174 685 TELMK 689 (710)
Q Consensus 685 ~~~~~ 689 (710)
.++|+
T Consensus 515 EK~~~ 519 (564)
T KOG1174|consen 515 EKSDD 519 (564)
T ss_pred HhccC
Confidence 88876
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.07 E-value=3.8e-06 Score=89.34 Aligned_cols=546 Identities=12% Similarity=-0.000 Sum_probs=273.3
Q ss_pred HHHHHHHhcccCchHhHHHHHHHHHHhCCCCC-CchhhHHHHHHHccCChhHHHHhHhhCCC---CCCccHHHHHHHHHh
Q 005174 77 FAHIIFCCGKVKALAQGKQLHACAIALGLEKN-PVLVPKLVTFYASFSLYNNACFLVENSNI---RYPLPWNLLISLYVR 152 (710)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 152 (710)
+...+..|.+.. .+..++..+....+.++ ..+|..|...|....+...|.+.|++..+ .+..++......|++
T Consensus 462 ~~w~a~~~~rK~---~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae 538 (1238)
T KOG1127|consen 462 EFWVALGCMRKN---SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAE 538 (1238)
T ss_pred HHHHHHHHhhhh---HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Confidence 344445554432 33444444444444444 36788999999988899999999987554 456778899999999
Q ss_pred CCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 005174 153 DGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231 (710)
Q Consensus 153 ~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 231 (710)
..+++.|..+.-.--+.. ...-...|...--.+...++...+..-++...+--|.|...|..|..+|.++|++..|.++
T Consensus 539 ~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv 618 (1238)
T KOG1127|consen 539 ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV 618 (1238)
T ss_pred cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh
Confidence 999999998833322210 0001112222223356777777777777777777788999999999999999999999999
Q ss_pred HhhcCCCChhHHHH---HHHHHHhCCChHHHHHHHHHHHHc------CCCCceehHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 232 FDKMLERDAVSWNT---MISAYASKGLWKEAFQLFVEMQEE------GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302 (710)
Q Consensus 232 ~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (710)
|.+...-++.++.. ....-+..|.+.+|+..+...... +..--..++-.+...+.-.|-..++.++++.-.
T Consensus 619 F~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 619 FTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 98875433333222 223456789999999888776432 111123334444444444454555555555443
Q ss_pred h-------CCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCH---H---HHHHHHH
Q 005174 303 T-------QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL---R---HAYILFK 369 (710)
Q Consensus 303 ~-------~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~ 369 (710)
+ ....-+...+..+-.+|. ++.... .. .|+..+...|..-.-+.+.. | -+.+.+-
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~----------~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~ 766 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACY----------IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI 766 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHH----------HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh
Confidence 2 211122222222222221 111111 00 11111111111111111111 1 0111110
Q ss_pred hcC--CCChhHHHHHHHHHHh----cC----ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005174 370 MTA--EKSIITWNSMLSGYTH----LD----CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439 (710)
Q Consensus 370 ~~~--~~~~~~~~~li~~~~~----~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (710)
.-. ..+..+|..++..|.+ .+ +...|+..+++.++. ..|...+-..+......|++.-+...|-....
T Consensus 767 ~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 767 AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhh
Confidence 000 0123445554444433 11 122455555554443 22333333333333444555554444444333
Q ss_pred hCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHH-------------
Q 005174 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEE------------- 503 (710)
Q Consensus 440 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~------------- 503 (710)
. .+.+..+|..+.-.+.+..+++.|...|.....- |.+.|--........|+.-++..+|..
T Consensus 845 s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 845 S--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred c--cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 3 3555566666666666666666666666655532 334443333333333444444444333
Q ss_pred --------------------------HHH---------CCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC
Q 005174 504 --------------------------MNK---------NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548 (710)
Q Consensus 504 --------------------------m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 548 (710)
+.. .|.+-+...|.......-+.+.+..|.....+...-...+-+
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110 012223334444444444444455444444443321111222
Q ss_pred hhHHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc---hHHHH
Q 005174 549 LEHFA----CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG---YYVLI 621 (710)
Q Consensus 549 ~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l 621 (710)
...|+ .+...++..|.++.|..-+...+...+..+-.+-+.. .-.|+++.+.+.+++++.+--++.. ....+
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 33333 2334444556666665555544433333333332222 3457788888888888887544332 23344
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 005174 622 ANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+.....++.-+.|....-+..
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHH
Confidence 445556666677766654443
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=7.8e-06 Score=84.94 Aligned_cols=407 Identities=12% Similarity=0.055 Sum_probs=255.4
Q ss_pred hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHH
Q 005174 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
..+.-|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++.......|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 44567889999999999999999999999998843 356689999999999999999999998875543335544444
Q ss_pred HHHH-HHH-hcCChHHHHHHHHHHHhC--C----CCCChhHHHHHHHHh--hccCC-------hHHHHHHHHHHHhhcCC
Q 005174 280 TIAG-GCL-RTGNFKGVLELLSRMRTQ--E----TYLDSVATVIGLGAC--SHVGA-------LKLGKEIHGSAVRGCYG 342 (710)
Q Consensus 280 ~li~-~~~-~~g~~~~a~~~~~~m~~~--~----~~p~~~t~~~~l~~~--~~~~~-------~~~a~~i~~~~~~~~~~ 342 (710)
.++. .|. +.+.+++++++-.+.... + +.|-...+..+-... ..... ..++.+.++..++.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~- 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP- 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-
Confidence 4443 232 446788888877776652 1 222222221111111 11111 2334455555555542
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHH
Q 005174 343 EYENVRNALITMYSRCKDLRHAYILFKMTA----EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASI 417 (710)
Q Consensus 343 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l 417 (710)
.|+.+.-.+---|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+.....- |+ ......-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhh
Confidence 333444445556788889999988877643 3477899999999999999999999988876541 11 0000000
Q ss_pred HHHHhccCchHHHHHH-------HH----------HHH----HhC-C-----CCCchHHHhHHhhhhhh---cCChhHHH
Q 005174 418 LPLCARVANLQHGKEF-------HC----------YIL----RRA-M-----FNEHLLLWNSLVEMYAR---SGKVPEAK 467 (710)
Q Consensus 418 l~~~~~~~~~~~a~~~-------~~----------~~~----~~~-~-----~~~~~~~~~~li~~~~~---~g~~~~A~ 467 (710)
+..-...++.+++... |+ +.. +.| . ......++..+...... .-..+...
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0000111222222211 11 110 000 0 00111222222211111 11111111
Q ss_pred HHHhhcCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 468 SVFDLMSRRD------EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 468 ~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
..+.....++ ...|......+.+.+..++|...+.+.... ..-....|......+...|..++|.+.|....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al- 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL- 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-
Confidence 1111111222 224666777888889999998888887753 23345566666666778899999999998876
Q ss_pred HhCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 542 IYGIFPQ-LEHFACMVDLYGRAGLLNKAKE--IITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 542 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
-+.|+ +....++..++.+.|+..-|.. ++..+ ...| +...|..|...+.+.|+.+.|...+..+.++++.+|.
T Consensus 712 --~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 712 --ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred --hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 47998 8899999999999998777776 77776 4445 7889999999999999999999999999999887653
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=3.1e-08 Score=106.98 Aligned_cols=210 Identities=10% Similarity=-0.008 Sum_probs=164.7
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhh---------hcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcC
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA---------RSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQG 492 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 492 (710)
++++.|...+++.++.. +.+...+..+..+|. ..+++++|...+++..+. +...|..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 34678889999988864 445566666665544 234578999999987753 6778888889999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKE 570 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 570 (710)
++++|+..|++..+. .|+ ...+..+...+...|++++|...++++.+ +.|+ ...+..+...+...|++++|+.
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 999999999999985 455 55777788889999999999999999986 5777 3334445556777899999999
Q ss_pred HHHhCC--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 571 IITKMP--YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 571 ~~~~m~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+++.. ..|+ ...+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 998873 2353 4456667777889999999999999998888888888888888888888 588887777654
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.6e-05 Score=84.57 Aligned_cols=255 Identities=11% Similarity=0.130 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005174 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438 (710)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 438 (710)
+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+ .-|+..|.-+++.+.+.|.+++-..++..+.
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4455555555554443 3577788888888888877776643 2356677788888888888888777777776
Q ss_pred HhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-----------------------CChhHHHHHHHHHHhcCChH
Q 005174 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----------------------RDEVTYTSLIAGYGIQGEGR 495 (710)
Q Consensus 439 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~ 495 (710)
+.. -.|. +-+.||-+|++.+++.+-++++..--. .++.-|..|...+...|++.
T Consensus 1161 kk~-~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1161 KKV-REPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred Hhh-cCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 655 3443 346777788888877776665432110 13445666677777777777
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
.|.+.-++. .+..||.-+-.+|...+.+.-|. |... .+--..+-..-++.-|...|.++|-+.+++..
T Consensus 1238 ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1238 GAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 776654443 25668888888887766554432 2211 22233455677889999999999999888865
Q ss_pred C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-C-------CCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 576 P--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET-R-------PENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 576 ~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-------p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
- .+.-...|.-|.--|.+.+ .++-.+.++.+..- + .+....|.-++-+|.+-..||.|.-.
T Consensus 1306 LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 2 1223334444444444432 33344444444321 1 12356788888888888888887543
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.03 E-value=5.5e-06 Score=84.97 Aligned_cols=253 Identities=14% Similarity=0.157 Sum_probs=133.5
Q ss_pred hcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 357 RCKDLRHAYILFKMTAEKSII--TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
....+.+|+.+++.+..+++. -|..+...|+..|+++.|.++|-+.- .+.-.|..|.+.|.++.|..+-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 334444555555544444332 23444445555555555555554321 1233344455555555544443
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-- 512 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 512 (710)
.+... .......|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..++.+++.++- .|+
T Consensus 815 ~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l 881 (1636)
T KOG3616|consen 815 EECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHL 881 (1636)
T ss_pred HHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence 32211 222333444444444455555555555555554443 244555556655555555443 233
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-----HHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS-----AMWATL 587 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-----~~~~~l 587 (710)
..|...+..-+...|++..|+..|-+..+ |.+-+++|-..+.+++|.++-+.-.. .|. ..|..-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFLWAKS 950 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHHHHHh
Confidence 33556666677778888888877766532 67788899999999999888776531 121 222211
Q ss_pred H------HHHHhcCChHHHHHH------HHHHH-----hhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 588 L------GACQIHRNTGIGEWA------AEKLL-----ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 588 ~------~~~~~~g~~~~a~~~------~~~~~-----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+ ....++|-++.|... ++.+. .....-+..+..++.-+...|++++|.+-+-+..
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 1 122344444433321 11111 1123346778889999999999999977655443
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=4.3e-08 Score=100.66 Aligned_cols=235 Identities=17% Similarity=0.142 Sum_probs=154.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 005174 345 ENVRNALITMYSRCKDLRHAYILFKMTAEK----------SII-TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413 (710)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 413 (710)
..+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++..--
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~------- 271 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR------- 271 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------
Confidence 344555777777777777777777654321 111 12234445555666666666666554310
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCC-CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC----------CCh-hHH
Q 005174 414 IASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR----------RDE-VTY 481 (710)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~ 481 (710)
... .|. .+.-..+++.|..+|.+.|++++|...+++..+ +.+ ..+
T Consensus 272 ---------------------e~~--~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 272 ---------------------EEV--FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred ---------------------HHh--cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 000 010 111234455666667777777777666665431 122 245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKN---QIKPD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIY-----GIFPQ- 548 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~- 548 (710)
+.++..+...+++++|..++++..+. -+.++ ..+++.+...|.+.|++++|+++|+++.+.. +..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 66777888889999999888876542 12333 3478889999999999999999999987653 22333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM--------PYTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 609 (710)
...++.|...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|.+..+.+..
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456788999999999999999888875 23444 45788999999999999999998887764
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=2.1e-08 Score=92.69 Aligned_cols=222 Identities=12% Similarity=0.056 Sum_probs=189.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHhcc
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS-ILPLCARV 424 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~ 424 (710)
-+.+..+|.+.|.+.+|.+.|+...+ +-+.+|-.|-..|.+..++..|+.+|.+-.+. .|-.+||.. +.+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 36788999999999999999987654 57789999999999999999999999998875 677777755 44577788
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLF 501 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (710)
++.+.+.++++.+.+.. +.++....++...|.-.++++.|...+.++.+ .++..|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999985 66777778888899999999999999998775 47889999999999999999999999
Q ss_pred HHHHHCCCCCCh--HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 502 EEMNKNQIKPDH--VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 502 ~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
++....--.|+. ..|-.+.......|++..|.+.|+..... .|+ .+.++.|.-.-.+.|++++|..+++...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 998876555653 35777777778889999999999988753 555 8889999999999999999999998774
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=8.6e-06 Score=85.09 Aligned_cols=408 Identities=15% Similarity=0.081 Sum_probs=231.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHH-h-----
Q 005174 217 SMYGKFGQVDVARRLFDKMLE--RDAV-SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL-R----- 287 (710)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~----- 287 (710)
..+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344667777777777766533 2433 34445566777777788888887777753 44444444443333 1
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCCh-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005174 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL-KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366 (710)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 366 (710)
..+.+...++|+++...- |.......+.-.+.....+ ..+.......++.|+| .+++.|-..|....+.+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 124566677777776553 2222211111111111111 2344444555555543 345555555655444444444
Q ss_pred HHHhcC------------------CCChh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccC
Q 005174 367 LFKMTA------------------EKSII--TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASILPLCARVA 425 (710)
Q Consensus 367 ~~~~~~------------------~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~ 425 (710)
++.... .|... ++.-+...|...|++++|++++++.+++ .|+ ...|..-...+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 443321 12222 3455677788999999999999999887 566 456777777889999
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCCh----------hHH--HHHHHHHHhcCC
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE----------VTY--TSLIAGYGIQGE 493 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~ 493 (710)
++.+|.+..+...... ..|..+-+..+..+.++|++++|.+++....+.+. ..| .....+|.+.|+
T Consensus 243 ~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998875 67778888888899999999999999998876642 133 234678889999
Q ss_pred hHHHHHHHHHHHHC--CC---CCC----------hHHHHHHHHHhhccCc-------HHHHHHHHHHHHHHhCCCCCh--
Q 005174 494 GRVALKLFEEMNKN--QI---KPD----------HVTMVAVLSACSHSGL-------VVEGQKQFERMTSIYGIFPQL-- 549 (710)
Q Consensus 494 ~~~A~~~~~~m~~~--g~---~p~----------~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p~~-- 549 (710)
+..|++-|....+. .+ +-| ..+|..++...-+... ...|.+++-.+..........
T Consensus 321 ~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~ 400 (517)
T PF12569_consen 321 YGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQ 400 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 99888877665532 11 122 2233333332221111 122334443333220000000
Q ss_pred ---------hHHHHHHHHH---HhcCCHHHHHHHHHh-----------C----C--CCCCHHHHHHHHHHHHhcCChHHH
Q 005174 550 ---------EHFACMVDLY---GRAGLLNKAKEIITK-----------M----P--YTPTSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 550 ---------~~~~~li~~~---~~~g~~~~A~~~~~~-----------m----~--~~p~~~~~~~l~~~~~~~g~~~~a 600 (710)
.-...+-.-. .+...-+++...-.+ . + ..||+.- ..|+ ....=++.|
T Consensus 401 ~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A 476 (517)
T PF12569_consen 401 EADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEA 476 (517)
T ss_pred ccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHH
Confidence 0000111000 111111112111100 0 1 1122211 1122 223456678
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
.+.++-+.+..|++..+|..--++|.+.|++--|.+.++
T Consensus 477 ~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 477 MKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred HHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 888888999999999999999999999999988877654
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=3e-05 Score=73.07 Aligned_cols=211 Identities=14% Similarity=0.093 Sum_probs=131.8
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCC-------hHHHH
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE-------GRVAL 498 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~ 498 (710)
+-+.|.+++--+++. . +...-.|+--|.+.+++.+|..+.+++.-.++.-|-.-.-.++..|+ ..-|.
T Consensus 269 ngEgALqVLP~L~~~---I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH---I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CCccHHHhchHHHhh---C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 345566665544443 2 23345677789999999999999888765444433322222333333 45566
Q ss_pred HHHHHHHHCCCCCChHH-HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 005174 499 KLFEEMNKNQIKPDHVT-MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP- 576 (710)
Q Consensus 499 ~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 576 (710)
+.|+-.-+.+..-|... --++.+++.-...+++...++..+..- +.-|...--.+..+++..|++.+|+++|-++.
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 66665555554444321 223334444455788999998888763 33333333458899999999999999998885
Q ss_pred -CCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhhCCC-C-CchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 577 -YTPTSAMWATLLGA-CQIHRNTGIGEWAAEKLLETRPE-N-SGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 577 -~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.-.|..+|.+++.- |.+.|.. .-+++.+++.+.. + -.....+++.+.++|.+=-|.+.++.+....+
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP---~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKP---QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCc---hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 22467777776655 5566775 4456777776532 2 23344567777788888778888887765444
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=6.8e-08 Score=85.43 Aligned_cols=162 Identities=15% Similarity=0.086 Sum_probs=141.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
+...|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|++..+ +.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3455778899999999999999999985 454 55888888889999999999999999985 5787 889999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 005174 558 LYGRAGLLNKAKEIITKMPYTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 633 (710)
.+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++++|+.+.....+++.+.+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998843343 45788887778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 005174 634 LAKVRTCMRDLGV 646 (710)
Q Consensus 634 A~~~~~~m~~~~~ 646 (710)
|.-+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999888776544
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=2.3e-07 Score=91.50 Aligned_cols=232 Identities=9% Similarity=-0.062 Sum_probs=154.2
Q ss_pred CChHHHHHHHHHHHHcC-CCCc--HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHH
Q 005174 390 DCAEESAFLFREMFRSG-VEPN--YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466 (710)
Q Consensus 390 g~~~~a~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 466 (710)
+..+.++..+.+++... ..|+ ...|......+...|+.+.|...+...++.. +.+...|+.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 44556666666666432 1222 2334455556677777777777777777764 56678888999999999999999
Q ss_pred HHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHh
Q 005174 467 KSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543 (710)
Q Consensus 467 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 543 (710)
...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999988764 3 4667888888899999999999999998874 555432222222234567899999999776542
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC-CC
Q 005174 544 GIFPQLEHFACMVDLYGRAGLLNK--AKEIITKM-PYT----P-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRP-EN 614 (710)
Q Consensus 544 ~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~~----p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~ 614 (710)
..|+... ..++.. ..|+..+ +.+.+.+- ... | ....|..+...+...|+.+.|...++++++.+| +.
T Consensus 195 -~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3444322 233333 3444433 33333321 111 1 345788899999999999999999999999997 55
Q ss_pred CchHHHHHHHHHhcCC
Q 005174 615 SGYYVLIANMYAATGC 630 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~ 630 (710)
.++-..++.+....++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666665555444
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=0.00011 Score=75.89 Aligned_cols=192 Identities=14% Similarity=0.101 Sum_probs=114.0
Q ss_pred HHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHH
Q 005174 80 IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159 (710)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 159 (710)
.+.+..+.+.+.+|..+.+.+.... ....-|..+.+.|+..|+++.|+++|.+.. .++--|..|.++|++..|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 3444445566777777776665543 223446677788888888888888887632 356678888888888888
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C
Q 005174 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-R 238 (710)
Q Consensus 160 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~ 238 (710)
.++-.+.. |.......|..-..-.-..|.+.+|++++-.+. .|+ ..|.+|-+.|..+..+++.++-.. .
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~-----~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---Cch-----HHHHHHHhhCcchHHHHHHHHhChhh
Confidence 88766543 333344445444444556666766666654331 222 345677777777777777766522 1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHH
Q 005174 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 297 (710)
-..|...+..-+-..|+...|..-|-+.. -|.+-++.|-..+.|++|.++
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 22344555556666677766666654432 233444445555555554443
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.91 E-value=7.3e-06 Score=76.79 Aligned_cols=196 Identities=14% Similarity=0.097 Sum_probs=114.6
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhh---cCCCChhHHHHHHHHHHhcCChHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL---MSRRDEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 497 (710)
+...|+...++.....+++- .+.+...+..-..+|...|.+..|..=+.. +.+.+...+--+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 33455566666666666655 367777777778888888888888665543 3445666666777778888888888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005174 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-P 576 (710)
Q Consensus 498 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 576 (710)
+...++.++ +.||....-.. | ..+....+.++.|.+ ..+.+++-++++-.+.. .
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHH---H---HHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHh
Confidence 888888776 56775422111 1 112222222333322 12233333443333322 2
Q ss_pred CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 577 YTPT-----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 577 ~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..|. ...+..+-..++..+++.+|.+.+..++.++|+|..++...+.+|.-...+|+|+.-++...+
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 2222 123334444555666676777777777777777777777777777766677777666665544
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=1.8e-06 Score=90.12 Aligned_cols=281 Identities=12% Similarity=0.072 Sum_probs=184.2
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----c--
Q 005174 353 TMYSRCKDLRHAYILFKMTAEK--SII-TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA----R-- 423 (710)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~-- 423 (710)
..+...|++++|.+.++.-... |.. ........+.+.|+.++|..+|+.++.. .|+...|-..+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 4456778888888888765442 433 3445567788888888898888888887 466666666555544 1
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChh-HHHHHHhhcCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Q 005174 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP-EAKSVFDLMSRRDE-VTYTSLIAGYGIQGEGRVALKLF 501 (710)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 501 (710)
..+.+...++++.+...- |.......+.-.+.....+. .+...+..+.++.+ .+|+.+-..|....+..-..+++
T Consensus 90 ~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 124566677777766553 22111212211111212222 23334444445544 45666666666555555555666
Q ss_pred HHHHHC----C----------CCCChH--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 005174 502 EEMNKN----Q----------IKPDHV--TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL 564 (710)
Q Consensus 502 ~~m~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 564 (710)
...... + -.|... ++.-+...|.+.|++++|.+++++.++ ..|+ ++.|..-...|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCC
Confidence 655432 1 123332 344456667889999999999999886 4888 8899999999999999
Q ss_pred HHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC--CC-------CchHHHHHHHHHhcCCchH
Q 005174 565 LNKAKEIITKMP-YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP--EN-------SGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 565 ~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~-------~~~~~~l~~~~~~~g~~~~ 633 (710)
+++|.+.++... .. -|...-+-....+.+.|+++.|+..+..+..-+- .. .+...-.+.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999998874 22 3555555566777889999999999999976552 21 2334567888999999999
Q ss_pred HHHHHHHH
Q 005174 634 LAKVRTCM 641 (710)
Q Consensus 634 A~~~~~~m 641 (710)
|++-+..+
T Consensus 324 ALk~~~~v 331 (517)
T PF12569_consen 324 ALKRFHAV 331 (517)
T ss_pred HHHHHHHH
Confidence 99876655
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=1.1e-05 Score=83.88 Aligned_cols=239 Identities=11% Similarity=0.060 Sum_probs=132.3
Q ss_pred CCCchhhHHH--HHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhC-C-------CCCCcc
Q 005174 107 KNPVLVPKLV--TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-R-------IRGDNF 176 (710)
Q Consensus 107 ~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g-------~~p~~~ 176 (710)
.|..+--.++ +.|...|+.+.|.+-.+-+. .-..|..|.+.|++.++.+-|.-.+..|... | .+-+..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e 801 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE 801 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence 3444545554 34667789998877766553 3346999999999999999888888777532 2 111112
Q ss_pred cHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCC
Q 005174 177 TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGL 255 (710)
Q Consensus 177 t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~ 255 (710)
+-..+.-.....|.+++|+.+|++.+ -|..|=..|-..|.+++|.++-+.--.- =..||......+-..++
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ck--------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCK--------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 22223333456777888888887764 2334445566778888888876543221 12355555555666677
Q ss_pred hHHHHHHHHHHH----------HcCC---------CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHH
Q 005174 256 WKEAFQLFVEMQ----------EEGV---------EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316 (710)
Q Consensus 256 ~~~a~~~~~~m~----------~~g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~ 316 (710)
.+.|++.|++-. ...+ ..|...|.-...-+-..|+.+.|+.+|...++ |.++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 777777776531 1100 11222233333333344555555555555443 2333
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370 (710)
Q Consensus 317 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (710)
.+..+-.|..++|.+|-++ ..|....-.|.+.|-..|++.+|..+|.+
T Consensus 945 VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred eeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444444555555544332 12223333455555555666666555544
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=1.5e-06 Score=77.16 Aligned_cols=192 Identities=12% Similarity=0.045 Sum_probs=128.6
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHH
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRV 496 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 496 (710)
.|...|+...|+.-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+ .+-...|....-+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 3344444444444444444442 44455566666666666666666666665442 245566667777777788888
Q ss_pred HHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 497 ALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 497 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 574 (710)
|...|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ +.|+ ....-.+.+...+.|++-.|..+++.
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 8888888776433332 44777777777788888888888888775 4666 66777888888888888888888877
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 575 MP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 575 m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
.. ..++..++...|......||.+.+-+.-.++....|...+
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 63 3466666666677777888888777777777777776543
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.6e-05 Score=77.96 Aligned_cols=214 Identities=15% Similarity=0.102 Sum_probs=118.1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC---hh-------HHHHH
Q 005174 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD---EV-------TYTSL 484 (710)
Q Consensus 415 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~-------~~~~l 484 (710)
..+.++..+..+++.+.+.+...+... .++.-++....+|...|........-+...+.. .. .+..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555555432 334444445555555555544444433332221 01 12223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcC
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL-EHFACMVDLYGRAG 563 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g 563 (710)
..+|.+.++++.|+..|++.......||.. .+....+++........ -+.|.. .-...=.+.+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 445666677777777777766544443321 12223333333333322 244542 12222256666777
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 564 LLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 564 ~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
++.+|+..++++. ..| |...|.....+|.+.|++..|..-++..++++|+....|..-+-++....+|++|.+.+.+-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777762 234 55666666666777777777777777777777777777777777777777777777776665
Q ss_pred Hh
Q 005174 642 RD 643 (710)
Q Consensus 642 ~~ 643 (710)
.+
T Consensus 453 le 454 (539)
T KOG0548|consen 453 LE 454 (539)
T ss_pred Hh
Confidence 43
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=6.6e-05 Score=80.31 Aligned_cols=461 Identities=12% Similarity=0.020 Sum_probs=266.3
Q ss_pred hhHHHHhHhhCCCCCC---ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHH
Q 005174 125 YNNACFLVENSNIRYP---LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201 (710)
Q Consensus 125 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 201 (710)
...|...|=+..+.|+ ..|..|-..|....+...|...|+...+.+- -|......+...|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 5566666554444444 4599999999888899999999999876432 25557788889999999999998882222
Q ss_pred HhcCCCh--HHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcee
Q 005174 202 DACHEWS--LFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276 (710)
Q Consensus 202 ~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 276 (710)
-..-+.- ..-|....-.|.+.++...|..-|+...+ .|...|..+..+|...|++..|+++|.+... +.|+ .
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-S 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-h
Confidence 1221111 22333355568889999999999998854 3777899999999999999999999988865 5555 3
Q ss_pred hHHHH--HHHHHhcCChHHHHHHHHHHHhC------CCCCChhHHHHHHHHhhccCCh-------HHHHHHHHHHHhhcC
Q 005174 277 TWNTI--AGGCLRTGNFKGVLELLSRMRTQ------ETYLDSVATVIGLGACSHVGAL-------KLGKEIHGSAVRGCY 341 (710)
Q Consensus 277 ~~~~l--i~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~t~~~~l~~~~~~~~~-------~~a~~i~~~~~~~~~ 341 (710)
+|... ....+..|.+.+++..+...... +..--..++......+...|-. +...+.+...+.+..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 33332 23457789999999998877543 1111123333333333333433 334444444444433
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHH-HHhcCCh---H---HHHHHHHHHHHcCCCCcHH
Q 005174 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII--TWNSMLSG-YTHLDCA---E---ESAFLFREMFRSGVEPNYV 412 (710)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~a~~~~~~m~~~g~~p~~~ 412 (710)
..+...|-.+ ..|..+|-... ++.+ .+..++.. +-..+.. + -+.+.+-.-+. ...+..
T Consensus 710 ~~~~~~Wi~a----------sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~ 776 (1238)
T KOG1127|consen 710 QSDRLQWIVA----------SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMY 776 (1238)
T ss_pred hhhHHHHHHH----------hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhccc
Confidence 3333333333 23344444444 3321 11111111 2222221 1 11111111111 112233
Q ss_pred HHHHHHHHHhc-------cC-chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHH
Q 005174 413 TIASILPLCAR-------VA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTY 481 (710)
Q Consensus 413 t~~~ll~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 481 (710)
++..+...+.+ .+ +...|...+...++.. ..+...||+|.-. ...|++.-|...|-.-. ..+..+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhe
Confidence 33333322221 22 2346677777777753 5667778887766 66688888888886544 3367789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHH---HHhCCCCChhHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMT---SIYGIFPQLEHFACMVD 557 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p~~~~~~~li~ 557 (710)
..+...+.+..+++-|...|...+. +.|+ ...|...-......|+.-+...+|..-. ...|-.|+..-|-+...
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 9999999999999999999998876 3443 4455444433445566666666665511 11144455444555555
Q ss_pred HHHhcCCHHHHHHHHHhCC-----------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 558 LYGRAGLLNKAKEIITKMP-----------YTP-TSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~-----------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
.-...|+.++-+.-.++++ ..| +...|.......-..+.++.+.....++
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5555666555444444432 123 3344544444444444444454444444
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=4.4e-07 Score=90.98 Aligned_cols=220 Identities=14% Similarity=0.098 Sum_probs=166.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHH
Q 005174 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALK 499 (710)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 499 (710)
+.|++..|.-.|+..++.. |.+...|..|...-+..++-..|...+.+..+- |....-.|.-.|...|.-.+|++
T Consensus 297 ~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4555666666666666654 666777777777777777777777777776643 56677777788888888889999
Q ss_pred HHHHHHHCCCC--------CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005174 500 LFEEMNKNQIK--------PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571 (710)
Q Consensus 500 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 571 (710)
.++..+....+ ++..+-.. ..+.....+....++|-.+....+.++|.++..+|.-.|--.|.+++|++.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887653211 00000000 122233345556666766666556667888999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 572 ITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 572 ~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
|+.. ..+| |...||.|....+...+.++|+.+|.+++++.|.-......|+-.|...|.++||.+.+-....+.-
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9987 4566 7889999999999999999999999999999999999999999999999999999998876655433
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=5.2e-05 Score=79.20 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=99.7
Q ss_pred hccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 005174 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS-IITWNSMLSGYTHLDCAEESAFLF 399 (710)
Q Consensus 321 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 399 (710)
...|.+++|+.++....+. ..|=..|...|.+++|.++-+.-..-. -.+|.....-+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3456666666666655543 234445566666666666554321111 124444444444455555555555
Q ss_pred HHHH----------HcC---------CCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 400 REMF----------RSG---------VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 400 ~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
++.. ... -.-|...|...-..+...|+.+.|..+|..... |-+++...|-.
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQ 951 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeec
Confidence 4321 110 123444555666666777888888888776554 56777788888
Q ss_pred CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (710)
|+.++|-++-++- .|....-.+.+.|-..|++.+|..+|.+.+
T Consensus 952 Gk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888888876653 356666678888888888889988888765
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.0021 Score=75.23 Aligned_cols=259 Identities=9% Similarity=-0.064 Sum_probs=121.6
Q ss_pred hHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCC--C-C----cccHHHHHHHHccc----CCchHH
Q 005174 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR--G-D----NFTYPSVLKACGEM----MDVDFG 194 (710)
Q Consensus 126 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~--p-~----~~t~~~ll~~~~~~----~~~~~a 194 (710)
++..+++....--+.++ -.+...... .+.+.++++...+.|+- | + -+.|+-+++.+... .+.+..
T Consensus 265 ~~~~~~l~~~a~~~~~~-~~l~~~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~ 340 (903)
T PRK04841 265 LETRHFLLRCSVLRSMN-DALIVRVTG---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQEL 340 (903)
T ss_pred HHHHHHHHHhcccccCC-HHHHHHHcC---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHH
Confidence 34445554443333333 233333332 33456677777776641 1 1 25567776665432 122223
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 005174 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS--WNTMISAYASKGLWKEAFQLFVEMQEEGVE 272 (710)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 272 (710)
..+| ......+...|++.+|..........+... ...........|+++.+..++..+......
T Consensus 341 ~~lh--------------~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~ 406 (903)
T PRK04841 341 PELH--------------RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLL 406 (903)
T ss_pred HHHH--------------HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHh
Confidence 3333 333445667788887777666664432211 111223345567777777777665322122
Q ss_pred CceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------CChhH--HHHHHHHhhccCChHHHHHHHHHHHhhcCCCc
Q 005174 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY------LDSVA--TVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344 (710)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~t--~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~ 344 (710)
.+..........+...|+++++..++......--. +.... ....-..+...|+++.+...+......-...+
T Consensus 407 ~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (903)
T PRK04841 407 ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTW 486 (903)
T ss_pred cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 22333344455566788899988888876543110 11111 11111223345666666666655544211111
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 345 E----NVRNALITMYSRCKDLRHAYILFKMTAE-------KS--IITWNSMLSGYTHLDCAEESAFLFREM 402 (710)
Q Consensus 345 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 402 (710)
. ...+.+...+...|++++|...+++... +. ..++..+...+...|++++|...+++.
T Consensus 487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 1223334444555555555555544321 00 112233334444555555555555443
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=3.1e-05 Score=71.27 Aligned_cols=309 Identities=14% Similarity=0.059 Sum_probs=167.2
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCCCCCC---ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH-HHHHcc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSNIRYP---LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV-LKACGE 187 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~ 187 (710)
+++.+..+.+..++++|++++....++++ ...+.+-.+|-+..++..|-..|+++-.. .|...-|..- ...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 34444445555666666666655443333 23455555666666666666666666542 2333322111 111223
Q ss_pred cCCchHHHHHHHHHHhcCCChHHHHHH--HHHHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHhCCChHHHHHHHH
Q 005174 188 MMDVDFGRVVHSCIDACHEWSLFVHNA--LVSMYGKFGQVDVARRLFDKML-ERDAVSWNTMISAYASKGLWKEAFQLFV 264 (710)
Q Consensus 188 ~~~~~~a~~~~~~~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~ 264 (710)
.+.+..|..+..++... ++...-.. -.......+|+..+..+.++.+ +.+..+-+.......+.|+++.|++-|+
T Consensus 91 A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred hcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 34444455444444311 11111111 1112335688888999999988 4566666666666778999999999999
Q ss_pred HHHHc-CCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHH-hhccCChHHHHHHHHHHHhhcCC
Q 005174 265 EMQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA-CSHVGALKLGKEIHGSAVRGCYG 342 (710)
Q Consensus 265 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~-~~~~~~~~~a~~i~~~~~~~~~~ 342 (710)
...+- |..| ...||.-+ ++.+.|+++.|++...++.++|++-.... ++-+.. -.....+..-..++...
T Consensus 169 aAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl-gIGm~tegiDvrsvgNt~~lh~Sa------ 239 (459)
T KOG4340|consen 169 AALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL-GIGMTTEGIDVRSVGNTLVLHQSA------ 239 (459)
T ss_pred HHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc-CccceeccCchhcccchHHHHHHH------
Confidence 87664 5554 46676544 55677899999999999988886422110 000000 00000000000111100
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005174 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEK-----SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417 (710)
Q Consensus 343 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 417 (710)
-...+|.-...+.+.|+++.|.+.+..|+.+ |++|...+.-.- -.+++.+..+-+.-+.+... -...||..+
T Consensus 240 -l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 240 -LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred -HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 0112233344566788899999988888865 556655543222 23444444444454554432 334677778
Q ss_pred HHHHhccCchHHHHHHHHH
Q 005174 418 LPLCARVANLQHGKEFHCY 436 (710)
Q Consensus 418 l~~~~~~~~~~~a~~~~~~ 436 (710)
+-.||+..-++.|-.++.+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 8788887777777776654
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=0.00011 Score=73.75 Aligned_cols=239 Identities=16% Similarity=0.072 Sum_probs=134.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 426 (710)
..|.++.-+..+++.|.+-+....+ .++.-++..-.+|...|.+.++...-....+.|-. ...-|+.+-.++
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~----- 301 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL----- 301 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH-----
Confidence 3455556666667776666665433 23334555666777777777766666655544411 111111111111
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
..+..+|.+.++++.|...|++...+... -....+....+++++..+...-
T Consensus 302 ------------------------~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~ 352 (539)
T KOG0548|consen 302 ------------------------ARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY 352 (539)
T ss_pred ------------------------HHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 11334555666677777766664322110 1112233344555555444433
Q ss_pred CCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HH
Q 005174 507 NQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT-SA 582 (710)
Q Consensus 507 ~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~ 582 (710)
+.|... -...-...+.+.|++..|...|.+++.. .|+ ...|..-.-+|.+.|.+.+|++-.+... ..|+ ..
T Consensus 353 --~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 353 --INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred --hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 233321 1222245566778888888888887764 465 6777888888888888887777655542 3332 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (710)
.|.-=..++....+++.|.++++..++.+|++.+.-..+..++..
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 444444455566778888888888888888877766666666554
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=2.1e-06 Score=83.46 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=98.6
Q ss_pred HhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc----cCc
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH----SGL 528 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~ 528 (710)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 334566677777777777654 45566666777888888888888888888763 333 333334443322 235
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 005174 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNT-GIGEWAAE 605 (710)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~ 605 (710)
+.+|..+|+++.++ ..+++.+.+.+..+....|++++|.+++.+. ...| +..++-.++..+...|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77888888887653 4466777778888888888888888877765 2233 455666666666666665 55667777
Q ss_pred HHHhhCCCC
Q 005174 606 KLLETRPEN 614 (710)
Q Consensus 606 ~~~~~~p~~ 614 (710)
++....|+.
T Consensus 261 qL~~~~p~h 269 (290)
T PF04733_consen 261 QLKQSNPNH 269 (290)
T ss_dssp HCHHHTTTS
T ss_pred HHHHhCCCC
Confidence 777777764
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=9.4e-05 Score=75.95 Aligned_cols=257 Identities=9% Similarity=-0.064 Sum_probs=144.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHH---HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 385 GYTHLDCAEESAFLFREMFRSGVEPNY-VTIAS---ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
.+...|++++|...+++..+. .|+. ..+.. ........+....+.+.+.. .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 455667788888877777665 2333 22221 11111123344444444433 1111233334445556677788
Q ss_pred CChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCh--HHHHHHHHHhhccCcHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI-KPDH--VTMVAVLSACSHSGLVVEGQK 534 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 534 (710)
|++++|...+++..+. +...+..+...|...|++++|+.++++...... .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888876642 455677777888888888888888888776421 1222 234456667778888888888
Q ss_pred HHHHHHHHhCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 005174 535 QFERMTSIYGIFPQLEHF-A--CMVDLYGRAGLLNKAKEI---ITKM-PYTPT---SAMWATLLGACQIHRNTGIGEWAA 604 (710)
Q Consensus 535 ~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~ 604 (710)
++++........+..... + .+...+...|..+.+.+. .... +..|. .........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888875321111111111 1 223333334432222222 1111 11011 122224555667778888888877
Q ss_pred HHHHhhCC---------CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 605 EKLLETRP---------ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 605 ~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
+.+....- .......+.+.++.+.|++++|.+.+......+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77654321 124556777888889999999999988776544
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=5.8e-08 Score=59.43 Aligned_cols=34 Identities=32% Similarity=0.654 Sum_probs=25.7
Q ss_pred cCCCCceehHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302 (710)
Q Consensus 269 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (710)
+|+.||..|||+||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677777777777777777777777777777763
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=5.9e-06 Score=80.29 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=141.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhccCc
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI-ASILPLCARVAN 426 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~ 426 (710)
...+.++|...|+.+.+..-...-..+.......+...+...++-+.++.-+++....+..++..++ ......+...|+
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~ 117 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGD 117 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC
Confidence 3455667777787776655554444455555544443333334455565555555444433233233 223345667888
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCCh-hHHHHHHHH----HHhcCChHHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE-VTYTSLIAG----YGIQGEGRVALKLF 501 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~----~~~~g~~~~A~~~~ 501 (710)
++.|.+++... .+.......+..|.+.++++.|.+.++.|.+.+. .+...+..+ +...+.+.+|..+|
T Consensus 118 ~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 118 YEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp HHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 99888876531 3466667788999999999999999999986522 223333333 33345799999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCH-HHHHHHHHhCC
Q 005174 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLL-NKAKEIITKMP 576 (710)
Q Consensus 502 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 576 (710)
+++.+. ..++..+.+.+..++...|++++|..++.+... ..|+ ..+...++-+..-.|+. +.+.+++.++.
T Consensus 191 ~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 191 EELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 998764 567888899999999999999999999988764 4566 77888888888888887 67778888874
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=8.8e-06 Score=77.88 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=107.1
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCC---Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----H
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DE---VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV----T 515 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 515 (710)
....+..+...|.+.|++++|...|+++... +. ..+..+..+|...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 3445556666666667777776666655432 11 24555666666666777777777666653 22211 2
Q ss_pred HHHHHHHhhcc--------CcHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 005174 516 MVAVLSACSHS--------GLVVEGQKQFERMTSIYGIFPQL-EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586 (710)
Q Consensus 516 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 586 (710)
+..+..++... |+.++|.+.++.+... .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 33333334332 5566666666666543 3442 12211111100 00000 001124
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+...+...|+++.|...++.+++..|++ +..+..++.+|...|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566788899999999999999997765 478999999999999999999998887654
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.1e-05 Score=72.39 Aligned_cols=176 Identities=16% Similarity=0.156 Sum_probs=104.8
Q ss_pred CChhHHHHHHhhcC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHhhccCcHHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 461 g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (710)
+++..+..+.+... +.+..+.+.......+.|+++.|++-|+...+- |..| ...|+..+. ..+.|+++.|.++..+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHH
Confidence 44444444554444 233334444444444555555555555555442 3332 334443332 2234555555555555
Q ss_pred HHHHhCCCC-------------C--------h-------hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHH
Q 005174 539 MTSIYGIFP-------------Q--------L-------EHFACMVDLYGRAGLLNKAKEIITKMP----YTPTSAMWAT 586 (710)
Q Consensus 539 ~~~~~~~~p-------------~--------~-------~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ 586 (710)
+.++ |++. | . ..+|.-.-.+.+.|+.+.|.+.+..|| ...|+++...
T Consensus 204 IieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 204 IIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 5443 3221 1 1 123333345568899999999999996 3457777765
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
+.-. -..+++..+.+-+.-+++++|--++++..+.-+||+..-++-|..++.+
T Consensus 283 ~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 283 QALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 5322 1245555577788888999998889999999999999999999888543
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=9.7e-06 Score=74.27 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=111.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAG 563 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 563 (710)
+..|...|+++.+....+.+.. |. . .+...++.+++...++..... .|+ ...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 4567777887776544433321 11 0 122356677777777777653 666 888999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005174 564 LLNKAKEIITKM-PYTP-TSAMWATLLGA-CQIHRN--TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 564 ~~~~A~~~~~~m-~~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
++++|...+++. ...| +...+..+..+ +...|+ .+.|.+.++++++.+|+++..+..++..+.+.|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887 3344 67777777776 466676 589999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 005174 639 TCMRDLGV 646 (710)
Q Consensus 639 ~~m~~~~~ 646 (710)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99876444
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.4e-07 Score=57.74 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=25.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 544 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777777777777777777777777773
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.52 E-value=0.00023 Score=73.08 Aligned_cols=265 Identities=10% Similarity=-0.012 Sum_probs=157.4
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHHhCC-CCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhh--
Q 005174 37 RINLLETLKDFAGRGNLSKAFEAFTRIRITAA-SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP-- 113 (710)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 113 (710)
...+..+...+...|+.+++...+........ .++.. .........+...|+++.+...++.+++.. +.+..++.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER-ERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 44555666677778888888777777655433 22221 112222333456789999999999988774 44444443
Q ss_pred -HHHHHHHccCChhHHHHhHhhCCCCCCcc---HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccC
Q 005174 114 -KLVTFYASFSLYNNACFLVENSNIRYPLP---WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189 (710)
Q Consensus 114 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 189 (710)
.+.......+....+.+.++.....++.. +..+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22222233566677777776533333332 3334467888999999999999998753 223456677777888899
Q ss_pred CchHHHHHHHHHHhcC--CChH--HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--hHHH------HHHHHHHhCCChH
Q 005174 190 DVDFGRVVHSCIDACH--EWSL--FVHNALVSMYGKFGQVDVARRLFDKMLERDA--VSWN------TMISAYASKGLWK 257 (710)
Q Consensus 190 ~~~~a~~~~~~~~~g~--~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~g~~~ 257 (710)
++++|...++...... .++. ..|..+...+...|++++|..+|++...+.. ..+. .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999998888777322 2332 3455778888899999999999988743211 1111 2233333344333
Q ss_pred HHHHH--HHHHHHcCCCCceehHH--HHHHHHHhcCChHHHHHHHHHHHhC
Q 005174 258 EAFQL--FVEMQEEGVEVNVITWN--TIAGGCLRTGNFKGVLELLSRMRTQ 304 (710)
Q Consensus 258 ~a~~~--~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~ 304 (710)
.+.++ +..............++ ....++...|+.+.|..+++.+...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33332 21111111111112222 4455667778888888888877653
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=3.6e-06 Score=72.87 Aligned_cols=122 Identities=8% Similarity=0.042 Sum_probs=88.7
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 005174 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP- 576 (710)
Q Consensus 499 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~- 576 (710)
.+|++..+ +.|+. +.....++...|++++|...|+.... +.|+ ...|..+..++.+.|++++|...|++.-
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 34543 44456667778888888888888764 4665 7777888888888888888888888772
Q ss_pred CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005174 577 YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627 (710)
Q Consensus 577 ~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (710)
.. .+...|..+..++...|+.++|...++.++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 23 3667777777888888888888888888888888888888777766543
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=1.4e-05 Score=82.57 Aligned_cols=210 Identities=13% Similarity=0.061 Sum_probs=128.7
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--CChhHHHHHHHHHHhcCChHH
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--RDEVTYTSLIAGYGIQGEGRV 496 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 496 (710)
..+...|-...|..++.++. .|...+.+|...|+..+|..+...-.+ +|...|..+.+.....--+++
T Consensus 406 ell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence 34444455555555554432 244555566666666666555543332 355555555555555555555
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 497 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
|.++++..... .-..+..-..+.++++++.+.|+.-.+ +.|- ..+|..+.-+..++++++.|.+.|...
T Consensus 476 awElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 476 AWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 65555543221 111111112235667777776666543 4554 566777777777888888887777665
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcC
Q 005174 576 -PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648 (710)
Q Consensus 576 -~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 648 (710)
...| +...||.+-.+|.+.|+-.+|...++.+++-+-++...|-...-+..+.|.|++|.+.+.++.+...++
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 3445 466788888888888888888888888887777777777777777778888888888888777655433
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=7.2e-06 Score=70.96 Aligned_cols=105 Identities=8% Similarity=-0.109 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 005174 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 611 (710)
.++++..+ +.|+. +..+...+...|++++|...|+..- .. .+...|..+..++...|+++.|...++.+++++
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45565553 46663 5567888999999999999999873 33 478899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 612 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
|+++..+..++.+|...|++++|.+.+.....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.46 E-value=2e-05 Score=86.95 Aligned_cols=198 Identities=13% Similarity=0.155 Sum_probs=146.9
Q ss_pred CCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hH
Q 005174 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR--------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HV 514 (710)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 514 (710)
|.+...|-..|......+++++|++++++.... -.-.|.++++.-...|.-+...++|++..+. -| -.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 555667777777777888888888888776532 2346777777777777777788888888763 23 34
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT---SAMWATLLGA 590 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~ 590 (710)
.|..|..-|.+.+.+++|-++++.|.++++ .....|..+++.+.+..+-++|..++.+. ..-|. .....-.+.-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 577777788888888888888888888765 45667888888888888888888888765 22232 3333444455
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
-.++||.+.|+.+++-++.-.|.....|..+++.-.+.|..+.++.++++...+++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 56788888888888888888888888888888888888888888888888877665
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.00023 Score=83.23 Aligned_cols=296 Identities=11% Similarity=0.015 Sum_probs=172.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----CC------h--hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HH
Q 005174 350 ALITMYSRCKDLRHAYILFKMTAE----KS------I--ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY----VT 413 (710)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~----~~------~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t 413 (710)
.....+...|++++|...+..... .+ . .....+...+...|++++|...+++....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 344445567788887777764321 11 1 11112233455678888888888877653111121 22
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCC----CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC-----------Ch
Q 005174 414 IASILPLCARVANLQHGKEFHCYILRRAM----FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-----------DE 478 (710)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~ 478 (710)
...+...+...|+++.|...+........ ..........+...+...|++++|...+++.... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 33344455677888888888777664321 1111234455666777888888888877654321 11
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHH--
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKN--QIKPD--HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-- 552 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-- 552 (710)
..+..+...+...|++++|...+.+.... ...+. ...+..+.......|+.++|...+........-......+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 23444555666778888888888876552 11122 2233344555667888888888887775431111111111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCC------CCCch
Q 005174 553 ---ACMVDLYGRAGLLNKAKEIITKMPYT--PTS----AMWATLLGACQIHRNTGIGEWAAEKLLETRP------ENSGY 617 (710)
Q Consensus 553 ---~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~ 617 (710)
...+..+...|+.+.|.+.+...... ... ..+..+..++...|+.+.|...++.+.+... +....
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 11224445678888888888766311 111 1133455667778888888888888776521 22346
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 618 YVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
+..++.+|.+.|+.++|.+.+.+..+..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7778888889999888888887776543
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.0034 Score=67.21 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=96.7
Q ss_pred HHHHHHHHhccCch---HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC----ChhHHHHHHH
Q 005174 414 IASILPLCARVANL---QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR----DEVTYTSLIA 486 (710)
Q Consensus 414 ~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~ 486 (710)
.+.+++.|.+.++. -+|+-+++...... +.|..+--.+|..|+-.|-+..|.++|..+.-+ |...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 44666778777764 45556666666654 566777778899999999999999999988744 333332 234
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHH---HHHHHHhCCCCChhHHHHHHHHHHhc
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQF---ERMTSIYGIFPQLEHFACMVDLYGRA 562 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~---~~~~~~~~~~p~~~~~~~li~~~~~~ 562 (710)
-+...|++..+...++...+- ..-+ ..+-..+..|| +.|.+....+.. +++... .-.....+-+..++.++..
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 455667877777777665441 0101 11222333344 445555444332 222211 0111134456778888889
Q ss_pred CCHHHHHHHHHhCCCCC
Q 005174 563 GLLNKAKEIITKMPYTP 579 (710)
Q Consensus 563 g~~~~A~~~~~~m~~~p 579 (710)
++.+.-...+..|..+|
T Consensus 593 ~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 593 DRGTQLLKLLESMKLPP 609 (932)
T ss_pred CcHHHHHHHHhccccCc
Confidence 99999888888886333
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=7.9e-06 Score=69.25 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=88.2
Q ss_pred CCC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 005174 544 GIF-PQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 544 ~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
++. ++ .+..-.+...+...|++++|.++|+-.- ..| +...|..|..+|...|+++.|..++.++..++|++|..|.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 455 44 5666778888899999999999999873 344 7788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 005174 620 LIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++.+|...|+.++|.+-|+....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999987764
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.40 E-value=0.0033 Score=63.32 Aligned_cols=176 Identities=14% Similarity=0.109 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHh
Q 005174 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471 (710)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 471 (710)
.+.....+.++...-..--..+|...++...+..-+..|+.+|.++.+.+...-++.++++++.-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45555566665544322233567777888888888888899998888888334478888888887764 67788888887
Q ss_pred hcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHhhccCcHHHHHHHHHHHHHHhC--
Q 005174 472 LMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH--VTMVAVLSACSHSGLVVEGQKQFERMTSIYG-- 544 (710)
Q Consensus 472 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 544 (710)
.=.+ + ++.--...+.-+...++-..|..+|++....++.||. ..|..+|.--++-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 5432 2 3444456677777888888888888888887666663 4788888887888888888888887776544
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHH
Q 005174 545 IFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 545 ~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
..|....-..+++.|.-.+....-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hcCCCChHHHHHHHHhhccccccc
Confidence 444444555566666655554433
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.39 E-value=0.0036 Score=63.14 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=85.0
Q ss_pred CCCCcchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCC
Q 005174 29 PINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108 (710)
Q Consensus 29 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (710)
....-+.|..+|..++.-+-.. ..+++.+.++++.. +-|... ..+..-|..--+..+++....+|...+..- .+
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~-r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSP-RAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCc-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 3344567889999999876555 99999999999985 344432 266666777777889999999999888764 34
Q ss_pred CchhhHHHHHHHc-cCChhHHH----HhHhh------CCCCCCccHHHHHH---------HHHhCCCchHHHHHHHHHHh
Q 005174 109 PVLVPKLVTFYAS-FSLYNNAC----FLVEN------SNIRYPLPWNLLIS---------LYVRDGFYAEALCVYKQMQS 168 (710)
Q Consensus 109 ~~~~~~l~~~~~~-~g~~~~A~----~~~~~------~~~~~~~~~~~li~---------~~~~~~~~~~A~~l~~~m~~ 168 (710)
...|...++--.+ .|+...++ +.|+- |.-..-..|+..+. -|..+.+.+...++|+++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6666666553222 23333322 22221 11222233666553 34455667777888888875
Q ss_pred C
Q 005174 169 R 169 (710)
Q Consensus 169 ~ 169 (710)
.
T Consensus 166 t 166 (656)
T KOG1914|consen 166 T 166 (656)
T ss_pred C
Confidence 3
No 117
>PLN02789 farnesyltranstransferase
Probab=98.37 E-value=0.00013 Score=72.04 Aligned_cols=162 Identities=7% Similarity=-0.055 Sum_probs=88.1
Q ss_pred hhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHH
Q 005174 463 VPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEG--RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537 (710)
Q Consensus 463 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (710)
++++...++++.+. +...|+.....+.+.|+. ++++.+++++.+... -|..+|.....++.+.|+++++.+.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455544444321 333444333333333332 455566666655321 134455555555555666666666666
Q ss_pred HHHHHhCCCCC-hhHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHH
Q 005174 538 RMTSIYGIFPQ-LEHFACMVDLYGRA---GL----LNKAKEIITKM-PYTP-TSAMWATLLGACQIH----RNTGIGEWA 603 (710)
Q Consensus 538 ~~~~~~~~~p~-~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~ 603 (710)
++.+. .|+ ...|+....++.+. |. .++++++..++ ...| |...|+-+...+... ++...+...
T Consensus 167 ~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 167 QLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 66543 333 34444444333332 21 23455555333 3334 667787777777663 334557777
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhc
Q 005174 604 AEKLLETRPENSGYYVLIANMYAAT 628 (710)
Q Consensus 604 ~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (710)
+..+...+|.++.....|+++|+..
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 7777778888888888889988863
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=5.9e-05 Score=76.19 Aligned_cols=236 Identities=13% Similarity=0.130 Sum_probs=151.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEK---SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASILPLCARVANLQH 429 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 429 (710)
-+.+.|++.+|.-.|+..... +...|--|......+++-..|+..+++.++. .|+ ...+..|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 356778888888888876554 4567888888888888888888888887775 444 4455555566777777777
Q ss_pred HHHHHHHHHHhCCCCCchHHHhHHh-------hhhhhcCChhHHHHHHhhcC-----CCChhHHHHHHHHHHhcCChHHH
Q 005174 430 GKEFHCYILRRAMFNEHLLLWNSLV-------EMYARSGKVPEAKSVFDLMS-----RRDEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A 497 (710)
|...++.-++.. ++- ...-.+-. ........+....++|-++. ..|......|.-.|-..|++++|
T Consensus 372 Al~~L~~Wi~~~-p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNK-PKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhC-ccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777776665543 110 00000000 01112222334444554443 23666777777777778888888
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 498 LKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 498 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
++.|+..+. ++|+ ...|+.|...++...+.++|...|.++++ ++|+ ++....|.-.|...|.++||.+.|-+.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 888888776 4564 55677777777887788888888888774 6788 677777777888888888887766433
Q ss_pred ---C---------CCCCHHHHHHHHHHHHhcCChH
Q 005174 576 ---P---------YTPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 576 ---~---------~~p~~~~~~~l~~~~~~~g~~~ 598 (710)
. ..++...|.+|=.++.-.++.+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 0 1123456666665555555544
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=4.1e-05 Score=73.24 Aligned_cols=183 Identities=18% Similarity=0.088 Sum_probs=125.7
Q ss_pred CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCc-hHHHhHHhhhhhhcCChhHHHHHHhhcCCC---Chh---HH
Q 005174 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH-LLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEV---TY 481 (710)
Q Consensus 409 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---~~ 481 (710)
.....+......+...|+++.|...+..+....+-.+. ...+..+...|.+.|++++|...|+++.+. +.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777777889999999999999999887522221 246788899999999999999999998643 222 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHH
Q 005174 482 TSLIAGYGIQ--------GEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552 (710)
Q Consensus 482 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 552 (710)
..+..++... |++++|.+.|+++.+. .|+.. .+..+.... . . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHH-H--------HHH
Confidence 5566666654 7889999999999874 55543 222211110 0 0 0000 0 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKM----PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
..+...|.+.|++++|+..+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788889999998888776 2223 356778888888889998888888777766555
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.32 E-value=0.00019 Score=79.73 Aligned_cols=225 Identities=12% Similarity=0.099 Sum_probs=169.1
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHHHHhhc-CC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHHHHHH
Q 005174 311 VATVIGLGACSHVGALKLGKEIHGSAVRGC-YG---EYENVRNALITMYSRCKDLRHAYILFKMTAEK-S-IITWNSMLS 384 (710)
Q Consensus 311 ~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~ 384 (710)
..|...|......++++.|+.+.+++++.- +. .-..+|.++++.-..-|.-+...++|++..+- | -..|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 345566666677777777777777766542 21 12356778888777778888888899887763 3 246788888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChh
Q 005174 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 464 (710)
.|.+.+..++|.++|+.|.+. ..-....|...+..+.+..+-+.|+.++.++++.-+-..........+++-.++|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 899999999999999999876 3356677888888888888889999999888886422235666777788888999999
Q ss_pred HHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHhhccCcHHHHHHHH
Q 005174 465 EAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 465 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
.+..+|+..... -...|+..|+.-.++|+.+.+..+|++....++.|- ...|...|..-...|+-+.++.+-
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 999999987643 466899999999999999999999999999888775 346667776555666655444443
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=2.4e-05 Score=81.05 Aligned_cols=215 Identities=13% Similarity=0.119 Sum_probs=174.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 005174 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 421 (710)
+|-...-..+...+..+|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 4444555678888999999999999999764 688899999999999999999998887 389999999999888
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHH
Q 005174 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVAL 498 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 498 (710)
....-+++|.++.+...... -..+.....+.++++++.+.|+.-.+- -..+|-....+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88888888888877655431 122222233478999999999865543 4568888888899999999999
Q ss_pred HHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 499 KLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 499 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+++..+- . .-+...|...+-...+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999886 5676 457999999999999999999999998874 3 344566777888889999999999999887
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.0002 Score=71.22 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=112.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGR 561 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 561 (710)
..-.+...|++++|+..++.+... .||.. .......-+...++.++|.+.++++.. ..|+ ....-.+.++|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHh
Confidence 344556779999999999998875 55544 445556677899999999999999986 4788 6667788999999
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 562 AGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
.|+..+|+.++++.. .+-|+..|..|..+|...|+..++. ...+..|...|+|++|....+
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998873 4458899999999999999976554 445677888999999999988
Q ss_pred HHHhCC
Q 005174 640 CMRDLG 645 (710)
Q Consensus 640 ~m~~~~ 645 (710)
...++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 877644
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=8.5e-05 Score=67.77 Aligned_cols=127 Identities=13% Similarity=-0.002 Sum_probs=83.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 005174 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM--PYTPTSAMWATLLGACQIH 594 (710)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~ 594 (710)
..+-.++...|+-+.+..+....... -.-+....+.++....+.|++.+|...+++. +.++|...|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 44444555566666666665554321 1222445555777777777777777777766 2445677777777777777
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 595 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
|+++.|+..+.+++++.|.++..+..|+..|.-.|++++|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 777777777777777777777777777777777777777777766655433
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=0.00013 Score=66.94 Aligned_cols=154 Identities=10% Similarity=0.073 Sum_probs=112.4
Q ss_pred hhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHH
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 533 (710)
+..|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346777777776654443332221 11223566778888888877643 345677888888899999999999
Q ss_pred HHHHHHHHHhCCCCC-hhHHHHHHHHH-HhcCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 534 KQFERMTSIYGIFPQ-LEHFACMVDLY-GRAGL--LNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~-~~~~~~li~~~-~~~g~--~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
..|++... +.|+ ...+..+..++ .+.|+ .++|.+++++.- ..| +...+..+...+...|+++.|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998875 4676 77888888864 67777 589999998873 344 6778888888899999999999999999
Q ss_pred HhhCCCCCchHH
Q 005174 608 LETRPENSGYYV 619 (710)
Q Consensus 608 ~~~~p~~~~~~~ 619 (710)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999887765543
No 125
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.23 E-value=0.0051 Score=58.32 Aligned_cols=222 Identities=10% Similarity=0.013 Sum_probs=125.2
Q ss_pred CCCcchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCC
Q 005174 30 INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109 (710)
Q Consensus 30 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 109 (710)
....+.++..-..+.+.+...|.+.+|+.-|....+. .|+.. .++..-...|-..|....|..-+..+++. .||-
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y-~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF 105 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNY-QAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDF 105 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhH-HHHHHHHHHHhhhcCCccchhhHHHHHhc--CccH
Confidence 3445667788888999999999999999999988764 33322 13333444566667666666666666654 4554
Q ss_pred chh-hHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHccc
Q 005174 110 VLV-PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188 (710)
Q Consensus 110 ~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 188 (710)
... -.-...+.+.|.++.|..-|+.+...++.. +....++.+.- +.+++.. ....+..+...
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~-------~~~e~~~---------l~~ql~s~~~~ 168 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLA-------LIQEHWV---------LVQQLKSASGS 168 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHH-------hHHHHHH---------HHHHHHHHhcC
Confidence 221 122345567788888877777654333311 11111111111 1111111 11222233445
Q ss_pred CCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 005174 189 MDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM---LERDAVSWNTMISAYASKGLWKEAFQLFVE 265 (710)
Q Consensus 189 ~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 265 (710)
|+...+......+..-.+-|...|..-..+|...|++..|+.=+... ...++.+..-+-..+...|+.+.++...++
T Consensus 169 GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred CchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55555555555555444556666666666777777777665544433 334555565666666667777777777766
Q ss_pred HHHcCCCCce
Q 005174 266 MQEEGVEVNV 275 (710)
Q Consensus 266 m~~~g~~p~~ 275 (710)
.++ +.||.
T Consensus 249 CLK--ldpdH 256 (504)
T KOG0624|consen 249 CLK--LDPDH 256 (504)
T ss_pred HHc--cCcch
Confidence 655 44453
No 126
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=0.00093 Score=66.01 Aligned_cols=206 Identities=9% Similarity=0.027 Sum_probs=133.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhccC-chHHHHHHHHHHHHhCCCCCchHHHhHHhhhh
Q 005174 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT-IASILPLCARVA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (710)
+.+-..+...++.++|+.+..++++. .|+..| +..--..+...+ .++++...+..+++.. +.+..+|+.-.-.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l 116 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHH
Confidence 33344455667778888888877765 454433 333323344455 5678888888888765 55556676665555
Q ss_pred hhcCCh--hHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhcc---Cc-
Q 005174 458 ARSGKV--PEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS---GL- 528 (710)
Q Consensus 458 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~- 528 (710)
.+.|+. +++..+++++.+ +|..+|+.....+...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 566653 567777776664 46778888888888889999999999999886544 445555554444443 22
Q ss_pred ---HHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005174 529 ---VVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA----GLLNKAKEIITKM-PYTP-TSAMWATLLGACQI 593 (710)
Q Consensus 529 ---~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 593 (710)
.++...+...+.. +.|+ ...|+-+..+|... ++..+|.+++.+. ...| +......|+..|..
T Consensus 196 ~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 2456666666654 4676 77788888888773 4456788887775 2233 56677777777764
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00014 Score=79.24 Aligned_cols=137 Identities=9% Similarity=0.054 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+...+.+.+.+++|...+++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777777888888888888888888877 466644 566667777888888888888887765 4676 667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 555 MVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
+..++.+.|++++|..+|++.- ..| +...|.++..++...|+.+.|..+++.+++...+....|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 8888888888888888888773 233 467777777888888888888888888887766554443
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=2.9e-05 Score=66.84 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=80.6
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 545 IFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++.+.+++|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4565 556677788888888888888888876 2233 667777888888888999999999999989999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 005174 622 ANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+.+|...|++++|.+.++....
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998887665
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.17 E-value=0.018 Score=61.91 Aligned_cols=215 Identities=14% Similarity=0.088 Sum_probs=129.4
Q ss_pred ccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHH--HccCChhHHHHhHhhCC---CCCCccHHHHHHHHHhCCCchHHH
Q 005174 86 KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY--ASFSLYNNACFLVENSN---IRYPLPWNLLISLYVRDGFYAEAL 160 (710)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~ 160 (710)
..+++..|.+....+.+.. |+. .+...+.++ .|.|+.++|..+++... ..|..+...+-.+|.+.++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 3467777777777777653 333 344444444 47789999988888754 335667888888889999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC----------HHHHHH
Q 005174 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQ----------VDVARR 230 (710)
Q Consensus 161 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~ 230 (710)
.+|++... ..|+..-...+..+|.+.+++..-.+.--++-..++...+.+=++++.+...-. ..-|.+
T Consensus 98 ~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99998875 457777777778888887777655444434434555566665566665554311 234455
Q ss_pred HHhhcCCCC--hhH---HHHHHHHHHhCCChHHHHHHHH-HHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005174 231 LFDKMLERD--AVS---WNTMISAYASKGLWKEAFQLFV-EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304 (710)
Q Consensus 231 ~~~~~~~~~--~~~---~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (710)
.++.+.+.+ ..+ .-.-...+-..|++++|++++. ..-+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555554332 000 1111223344566777777763 3333222223333344555666667777777776666665
Q ss_pred C
Q 005174 305 E 305 (710)
Q Consensus 305 ~ 305 (710)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 4
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.3e-06 Score=52.16 Aligned_cols=35 Identities=34% Similarity=0.458 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 005174 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175 (710)
Q Consensus 141 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~ 175 (710)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.7e-06 Score=51.98 Aligned_cols=35 Identities=46% Similarity=0.654 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 513 (710)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999999873
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00041 Score=63.45 Aligned_cols=150 Identities=10% Similarity=0.067 Sum_probs=70.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 564 (710)
-..+...|+-+....+....... ..-|.......+....+.|++.+|...+++... .-.+|.+.|+.+.-+|.+.|+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 33444444444444444443221 111222333344444555555555555555543 122225555555555555555
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 565 LNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 565 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
.++|..-|.+. ...| +....+.|...+...||.+.|+..+.......+.+...-..|+-+....|++++|.++
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555444443 1222 3444455555555555555555555555555555555555555555555555555554
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00015 Score=72.94 Aligned_cols=127 Identities=16% Similarity=0.167 Sum_probs=106.6
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 527 (710)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..... +-|...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445666677778999999999999998888888889999999999999999999998642 235555555566688999
Q ss_pred cHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 005174 528 LVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYT 578 (710)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 578 (710)
+++.|..+.+++.. +.|+ ..+|..|+.+|.+.|++++|+..++.+|..
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999985 5888 789999999999999999999999999843
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.03 E-value=0.00091 Score=73.07 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=116.7
Q ss_pred CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHH
Q 005174 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV-TMVA 518 (710)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 518 (710)
++.+...+-.|.......|+.++|+.+++...+ | +...+..+...+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 577788999999999999999999999998874 4 5667888899999999999999999999984 56644 5556
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLL 588 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~ 588 (710)
+..++...|.+++|..+|+++... .|+ ...+..+..++-..|+.++|...|++.- ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 666778899999999999999863 566 7889999999999999999999999872 334445554443
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00011 Score=74.02 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=97.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQI 593 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 593 (710)
..+|+..+...++++.|..+++++.+. .|+. ...++..+...++-.+|++++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566667778888888888888764 4553 445777777788888888888776 2233 56666666677889
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
.++++.|...++++.++.|++..+|..|+.+|.+.|++++|+-.++.++
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888775
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.2e-05 Score=49.75 Aligned_cols=33 Identities=36% Similarity=0.676 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (710)
.+|+.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.2e-05 Score=49.72 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 005174 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273 (710)
Q Consensus 241 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 273 (710)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.00087 Score=66.83 Aligned_cols=177 Identities=16% Similarity=0.072 Sum_probs=127.5
Q ss_pred ChhHHHHHHhhcCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 462 KVPEAKSVFDLMSR------RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 462 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
++.++...-+.+.. ++...+...+.+.........+..++.+-.+. .-...-|..-+ .+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 34444444444442 24444555555443333333333333222221 11223344444 34577899999999
Q ss_pred HHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 536 FERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 536 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
++.+... .|+ ........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|++.++....-+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9998864 676 666778899999999999999999998 35666 67778888999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+++..|..|+.+|...|+-.+|..-+.++...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 99999999999999999999999988877653
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=5.5e-05 Score=70.40 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=48.6
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT-SAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~g~~~~ 599 (710)
..+.+++.+|...|.+.+. +.|+ ...|..=..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4455566666666665553 4554 344444455556666666555555544 23332 3355555555555566666
Q ss_pred HHHHHHHHHhhCCCCC
Q 005174 600 GEWAAEKLLETRPENS 615 (710)
Q Consensus 600 a~~~~~~~~~~~p~~~ 615 (710)
|+++|+++++++|++.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 6666666666666554
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.0011 Score=73.06 Aligned_cols=231 Identities=13% Similarity=0.097 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 005174 345 ENVRNALITMYSRCKDLRHAYILFKMTAE--KS-IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 421 (710)
...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++.+++..+ .+ +...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhc
Confidence 34556666666667777777766664433 22 22333333344555554444333 11 1122
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHH
Q 005174 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVAL 498 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 498 (710)
....++.....+...+.. ...+...+..+..+|-+.|+.++|..+++++.+- |+...|.+...|+.. +.++|+
T Consensus 94 ~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 222222222222222222 1223334555666666666666666666655532 455556666666666 666666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005174 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPY 577 (710)
Q Consensus 499 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 577 (710)
.++.+.... +...+++..+.++|.++... .|+ ...+-.+....... ...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~------------~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGH------------REF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhh------------hcc
Confidence 666555432 33334455555555555431 333 22221111111111 011
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 578 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
..-..++--+-..|...++++.+...++.+++.+|.|.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1122233334445556666667777777777777777666666666655
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.92 E-value=0.007 Score=67.09 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREM 402 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 402 (710)
..|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|++++.+.
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3444444444444444444444432 2334444444444444 444444444443
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0042 Score=56.96 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=65.7
Q ss_pred hhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh----ccCcHH
Q 005174 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS----HSGLVV 530 (710)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~ 530 (710)
..|++.|++++|.+.......-.....+ +..+.+..+.+-|.+.+++|.+- . +..|.+-|..++. ..+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccchhhh
Confidence 3444555555555555442211222111 22333444555555555555531 1 2333333333332 223455
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHH
Q 005174 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM--PYTPTSAMWATLLGACQIHR-NTGIGEWAAEKL 607 (710)
Q Consensus 531 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~ 607 (710)
+|.-+|++|.++ ..|+..+.+-+..+....|++++|..++++. ....++.+...++......| +.+--.+.+.++
T Consensus 191 dAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 555555555542 3455555555555555555555555555554 11223344433333322222 323334444444
Q ss_pred HhhCCC
Q 005174 608 LETRPE 613 (710)
Q Consensus 608 ~~~~p~ 613 (710)
....|.
T Consensus 269 k~~~p~ 274 (299)
T KOG3081|consen 269 KLSHPE 274 (299)
T ss_pred HhcCCc
Confidence 444444
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.016 Score=53.31 Aligned_cols=139 Identities=12% Similarity=0.032 Sum_probs=71.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH----Hh
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY----GR 561 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~ 561 (710)
..|...|++++|++..... -..+....+ ...+.+..+++-|.+.++.|.+- . +..+.+-|..++ .-
T Consensus 116 ~i~~~~~~~deAl~~~~~~----~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---d-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG----ENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---D-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhcc----chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---c-hHHHHHHHHHHHHHHhcc
Confidence 3455556666666655541 111222222 12234445566666666666531 1 223333333333 23
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 005174 562 AGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 634 (710)
.+.+.+|.-+|++|. ..|+..+.+....+|...|++++|+..++.++.-++.++++...++-+-.-.|+-+++
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 345666666666663 3455555555555566666666666666666666666666665555555555555443
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.78 E-value=0.00094 Score=57.35 Aligned_cols=112 Identities=10% Similarity=0.016 Sum_probs=80.3
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005174 500 LFEEMNKNQIKPDH-VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-P 576 (710)
Q Consensus 500 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 576 (710)
.|++... ..|+. .....+...+...|++++|.+.++.+... .|+ ...+..+...|.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 34433 34555666677788888888888887653 454 677778888888888888888888776 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 577 -YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 577 -~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
.+.+...+..+...+...|+.+.|...++.+++++|++..
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 2335667777777888888888888888888888887755
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.75 E-value=0.00051 Score=69.59 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=51.8
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~ 598 (710)
.+...|++++|...|+++.. +.|+ ...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455566666666666554 2444 445555555555556666555555554 1222 3444555555555555555
Q ss_pred HHHHHHHHHHhhCCCCCchHHHH
Q 005174 599 IGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 599 ~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
.|...++.+++++|+++.....+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 55555555555555555444443
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00031 Score=55.76 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
+..+...+...|++++|...+++.. ..| +...+..+...+...|+++.|...++.+..+.|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 5566777788888888888888762 233 44667777778888889999999999999888888888889999999999
Q ss_pred CchHHHHHHHHHHh
Q 005174 630 CWDKLAKVRTCMRD 643 (710)
Q Consensus 630 ~~~~A~~~~~~m~~ 643 (710)
++++|.+.+.....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888777654
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.001 Score=57.86 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=13.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
..+..++++|.+.|++++|...++
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344555556666666666655544
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.2e-05 Score=45.97 Aligned_cols=31 Identities=48% Similarity=0.733 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.002 Score=55.94 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH----VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFAC 554 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 554 (710)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+... .-.|+ ....-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44455555 3777788888888887752 222 22333445677788888888888888775 32222 123445
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 555 MVDLYGRAGLLNKAKEIITKMPYTP-TSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
|...+...|++++|+..++..+..+ ....+..+..++...|+.+.|..+++.+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6778888888888888887764222 4455666667788888888888888765
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.015 Score=53.16 Aligned_cols=185 Identities=15% Similarity=0.090 Sum_probs=131.7
Q ss_pred CCCchHHHHHHHHHHh---CC-CCCCcc-cHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHH
Q 005174 153 DGFYAEALCVYKQMQS---RR-IRGDNF-TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDV 227 (710)
Q Consensus 153 ~~~~~~A~~l~~~m~~---~g-~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 227 (710)
..++++.++++.+|.. .| ..|+.. .|..++-+....+..+.|...+..+...++-+..+-..-.-.+-..|.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4567888888888753 34 556665 456666777788889999999999885554444443333333445699999
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005174 228 ARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304 (710)
Q Consensus 228 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (710)
|.++++.+.+. |.++|---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 99999999764 5667776677777788888999988888776 7789999999999999999999999999999864
Q ss_pred CCCCChhHH-HHH---HHHhhccCChHHHHHHHHHHHhhc
Q 005174 305 ETYLDSVAT-VIG---LGACSHVGALKLGKEIHGSAVRGC 340 (710)
Q Consensus 305 ~~~p~~~t~-~~~---l~~~~~~~~~~~a~~i~~~~~~~~ 340 (710)
.|-...| ..+ +-.-+...+.+.++..+...++..
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 3333332 222 222233345566666776666654
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.5e-05 Score=45.85 Aligned_cols=31 Identities=42% Similarity=0.662 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 005174 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171 (710)
Q Consensus 141 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 171 (710)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.70 E-value=4.4e-05 Score=59.08 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHhCC-CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 562 AGLLNKAKEIITKMP-YT---PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~-~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
.|++++|+.+++++- .. ++...|..+..++.+.|+++.|..+++. .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355556666555551 11 2344455556666666666666666666 555565556666667777777777777777
Q ss_pred HHH
Q 005174 638 RTC 640 (710)
Q Consensus 638 ~~~ 640 (710)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.071 Score=52.64 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=86.3
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcH
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 529 (710)
.+..|.-+...|+...|.++..+..-|+..-|-..+.+|+..++|++-.++... +-++.-|-.++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888888888888888888888888888888888876665332 22457788888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005174 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592 (710)
Q Consensus 530 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~ 592 (710)
.+|..+..++. +..-+.+|.++|++.+|.+.--+.. |...+..+..-|.
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~ 302 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCC
Confidence 88887776632 2456778888888888877766543 4555544444443
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00013 Score=53.97 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG-CWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 643 (710)
+..+|..+...+...|+++.|...++++++++|+++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788888899999999999999999999999999999999999999999 79999998887654
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.64 E-value=0.00058 Score=69.07 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=96.2
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH
Q 005174 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-R-----DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278 (710)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 278 (710)
.+.+......+++......+++.+..++-+... | -..|..++|+.|.+.|..++++.++..=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344455555666666666777777777766633 2 2335679999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 005174 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323 (710)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~ 323 (710)
|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988888888887777776654
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.00082 Score=56.16 Aligned_cols=92 Identities=12% Similarity=-0.015 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP-YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIAN 623 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 623 (710)
+..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444445555555555555555441 1121 2233344455555555555555555555555543 334555555
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 005174 624 MYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 624 ~~~~~g~~~~A~~~~~~m~~ 643 (710)
++.+.|++++|.+.++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 56666666666665555544
No 157
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.59 E-value=0.00069 Score=65.54 Aligned_cols=255 Identities=11% Similarity=-0.016 Sum_probs=149.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchHHHHHHHHHHHHh----CCCCCchHHHhHHhhhh
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNY----VTIASILPLCARVANLQHGKEFHCYILRR----AMFNEHLLLWNSLVEMY 457 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~ 457 (710)
+|+.|+....+.+|+..++.| .-|. ..|..+-++|.-.+++++|.++|..-+.. |.-.-.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 566666666666666666665 2222 23444455666666677776665432210 10011112223334444
Q ss_pred hhcCChhHHHHHHhhcCC-------C--ChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH--
Q 005174 458 ARSGKVPEAKSVFDLMSR-------R--DEVTYTSLIAGYGIQGE--------------------GRVALKLFEEMNK-- 506 (710)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~-- 506 (710)
--.|.+++|.-.-.+-.. + ....+-.+...|...|+ ++.|.++|.+-++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666544332211 0 12233344455543332 2345555544222
Q ss_pred --CCCC-CChHHHHHHHHHhhccCcHHHHHHHHHHH---HHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 005174 507 --NQIK-PDHVTMVAVLSACSHSGLVVEGQKQFERM---TSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM---- 575 (710)
Q Consensus 507 --~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---- 575 (710)
.|-. .-...|..|...|.-.|+++.|...++.- .+.||-+.. ...+..+.+++.-.|+++.|.+.|+..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 2211 11235666666777788999998877643 334455544 667888999999999999999988764
Q ss_pred ---C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 576 ---P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET----R--PENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 576 ---~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
. ......+..+|.++|....+++.|+....+-+.+ + -.....|..|+++|...|..+.|+.+...-
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1 1123446677888888888888888777665544 2 224677899999999999999998876543
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.58 E-value=0.0016 Score=54.32 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=55.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT----SAMWATLLG 589 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~l~~ 589 (710)
+..+...+...|++++|...|..+...+.-.|. ...+..+..++.+.|++++|.+.++.+. ..|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455556666666666665543111111 2344455666666666666666666542 1222 344555556
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
++...|+.+.|...++.+++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6666677777777777777777765443
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.066 Score=55.91 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=15.6
Q ss_pred CCCCchhhHHHHHHHccCChhHHHHhHhh
Q 005174 106 EKNPVLVPKLVTFYASFSLYNNACFLVEN 134 (710)
Q Consensus 106 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 134 (710)
.|.+..|..|...-...-.++.|+..|-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVr 717 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVR 717 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 35566666665544444455555555544
No 160
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0081 Score=54.76 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=114.0
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL---IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
.+|.-++-+...+|+.+.|..+++.+..+-+-++... ..-+-..|++++|+++++...+.. +.|..++..=+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 4555666666778888888888887764322222221 223445688889999998888764 445666665555555
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---ChHH
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHR---NTGI 599 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g---~~~~ 599 (710)
..|.--+|.+-+....+. +.-|.+.|.-+.+.|...|++++|.-.++++- ..| +...+..+...+...| |.+.
T Consensus 132 a~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 566666888777777774 66778888888899999999999888888873 445 5566666666644433 6667
Q ss_pred HHHHHHHHHhhCCCCC
Q 005174 600 GEWAAEKLLETRPENS 615 (710)
Q Consensus 600 a~~~~~~~~~~~p~~~ 615 (710)
+...+.+.+++.|.+.
T Consensus 210 arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHhChHhH
Confidence 8888888888888543
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00019 Score=52.93 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=44.4
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
...|+++.|...++.+++.+|++...+..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999998776553
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=97.51 E-value=0.0013 Score=56.37 Aligned_cols=100 Identities=9% Similarity=-0.005 Sum_probs=84.0
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 544 GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
|+.++ .+..-....-+-..|++++|..+|+-+- ..-+...|..|...|...++++.|...+..+..++++||..+..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55555 4444455666678999999999998763 23367788899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 005174 621 IANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+.+|...|+.++|+..+....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999998887654
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0061 Score=59.48 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=113.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH--HhhccCcHHHHHHHHHHHHHHhCCCCChhH------------
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS--ACSHSGLVVEGQKQFERMTSIYGIFPQLEH------------ 551 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------ 551 (710)
.++.-.|++++|.+.--..++.. ++ ..+..+++ ++...++.+.|...|++... +.|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 45667788888888777766532 11 12222333 34456778888888887763 4565221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005174 552 -FACMVDLYGRAGLLNKAKEIITKM-P-----YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624 (710)
Q Consensus 552 -~~~li~~~~~~g~~~~A~~~~~~m-~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 624 (710)
+..=.+...+.|++.+|.+.+.+. . ..|+...|.....+..+.|+.++|....+.+++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 222235567889999999999887 2 344555666666778899999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCC
Q 005174 625 YAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 625 ~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
+...++|++|.+-++.......
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999887765443
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.00023 Score=51.83 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+...+...|+++.|...++.+++..|+++..+..++.++...|++++|.+.++...+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888888888888888888888887777543
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0053 Score=59.94 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
.+|-.+++...+.+..+.|..+|.+.++.+ ...+.....+++. +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467888888888888999999999998643 2223333333333 333567777999999999874 445677889999
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 558 LYGRAGLLNKAKEIITKMP-YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.+.+.|+.+.|..+|++.- .-|. ...|...+.--.++|+.+....+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999873 2233 3599999999999999999999999999998874
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.48 E-value=0.003 Score=56.78 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=90.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFA 553 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 553 (710)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+++... +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344667777788888888888888888876433332 35677777788888999999998888875 3565 66677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 554 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
.+..+|...|+...+..-++... ..++.|.+.++.+.+++|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77778877777666554333211 22566788888888888876 6666666665554
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.0039 Score=66.08 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHhhcc--------CcHHHHHHHHHHHHHH
Q 005174 477 DEVTYTSLIAGYGIQ-----GEGRVALKLFEEMNKNQIKPDH-VTMVAVLSACSHS--------GLVVEGQKQFERMTSI 542 (710)
Q Consensus 477 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~ 542 (710)
|...|...+.+.... +....|..+|++..+ ..|+. ..|..+..++... .++..+.+...+....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 555566555554332 225577777777776 35653 2333332222110 1122222222222211
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 543 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
.....+...|.++.-.....|++++|...+++. ...|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 001112344555544444556666666665555 24455555555555555666666666666666666665543
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.0011 Score=52.06 Aligned_cols=79 Identities=11% Similarity=0.137 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCceehHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCChhHH
Q 005174 243 WNTMISAYASKGLWKEAFQLFVEMQEEGV-EVNVITWNTIAGGCLRTG--------NFKGVLELLSRMRTQETYLDSVAT 313 (710)
Q Consensus 243 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~t~ 313 (710)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999998887653 345677888889888899999998
Q ss_pred HHHHHHhh
Q 005174 314 VIGLGACS 321 (710)
Q Consensus 314 ~~~l~~~~ 321 (710)
+.++....
T Consensus 108 nivl~~Ll 115 (120)
T PF08579_consen 108 NIVLGSLL 115 (120)
T ss_pred HHHHHHHH
Confidence 88886543
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.44 E-value=0.0026 Score=64.51 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=83.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA 562 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 562 (710)
-...+...|++++|+.+|++.++.. .-+...|..+..+|...|++++|...++++.. +.|+ ...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999853 22466788888889999999999999999986 4776 77899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005174 563 GLLNKAKEIITKM-PYTPTSAMWATLLGAC 591 (710)
Q Consensus 563 g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~ 591 (710)
|++++|+..|++. ...|+.......+..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999987 3556544444444333
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0013 Score=61.48 Aligned_cols=101 Identities=19% Similarity=0.138 Sum_probs=84.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA 562 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 562 (710)
.+-+.+.+++++|+..|.+.++. .| |.+.|..-..+|++.|.++.|.+-.+..+. +.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 34577889999999999999985 44 677788888899999999999998888774 7888 88999999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005174 563 GLLNKAKEIITKM-PYTPTSAMWATLLGA 590 (710)
Q Consensus 563 g~~~~A~~~~~~m-~~~p~~~~~~~l~~~ 590 (710)
|++++|++.|++. .+.|+..+|..=+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999987 577877666554433
No 171
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.42 E-value=0.0011 Score=59.22 Aligned_cols=97 Identities=14% Similarity=0.256 Sum_probs=71.1
Q ss_pred HHHHhhc--CCCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhc-------------
Q 005174 229 RRLFDKM--LERDAVSWNTMISAYASK-----GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT------------- 288 (710)
Q Consensus 229 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------------- 288 (710)
...|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+..|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456778888888887654 66777778888899999999999999999887542
Q ss_pred ---CChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCC
Q 005174 289 ---GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325 (710)
Q Consensus 289 ---g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~ 325 (710)
.+-+-|++++++|...|+.||..|+..++..+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345577777777777777777777777777766553
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0094 Score=53.35 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|...++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34567777777788888888888888876432221 24677777778888888888888888765 3455 555666
Q ss_pred HHHHHH
Q 005174 555 MVDLYG 560 (710)
Q Consensus 555 li~~~~ 560 (710)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 666666
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.35 E-value=0.0032 Score=56.40 Aligned_cols=85 Identities=6% Similarity=-0.066 Sum_probs=60.8
Q ss_pred hhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhH
Q 005174 35 IMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114 (710)
Q Consensus 35 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (710)
-....+..+...+...|++++|+..|++.......|.....++..+..++...|+.++|...+..+++.. +.....+..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 3456677788888889999999999998876644443322377788888888889999988888887653 333445555
Q ss_pred HHHHHH
Q 005174 115 LVTFYA 120 (710)
Q Consensus 115 l~~~~~ 120 (710)
+..+|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.0025 Score=57.32 Aligned_cols=82 Identities=13% Similarity=-0.054 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP---T-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
...+..+...|.+.|++++|...|++.- ..| + ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3345666666777777777777776552 112 1 3566777777888888888888888888888888888888888
Q ss_pred HHHhcCC
Q 005174 624 MYAATGC 630 (710)
Q Consensus 624 ~~~~~g~ 630 (710)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8887776
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.28 E-value=0.00022 Score=43.52 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=30.8
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 005174 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636 (710)
Q Consensus 604 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 636 (710)
++++++++|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.27 E-value=0.18 Score=49.29 Aligned_cols=279 Identities=16% Similarity=0.117 Sum_probs=183.9
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHhcC---CCChhHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHH
Q 005174 348 RNALITMYS--RCKDLRHAYILFKMTA---EKSIITWNSMLSG--YTHLDCAEESAFLFREMFRSGVEPNY--VTIASIL 418 (710)
Q Consensus 348 ~~~li~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll 418 (710)
|.+|-.++. -.|+-..|+++-.+.. ..|-...-.++.+ -.-.|+++.|.+-|+.|... |.. ..+..+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 456655554 3577777877766543 3454444444443 34569999999999999763 322 2233344
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC-----CCChh--HHHHHHHHHHh-
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-----RRDEV--TYTSLIAGYGI- 490 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~- 490 (710)
-.-.+.|+.+.|+++-......- +.-...+.+.+...+..|+++.|+++.+.-. ++++. .--.|+.+-+.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 44457888899988888777664 4556778899999999999999999998654 34433 22233332221
Q ss_pred --cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 005174 491 --QGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567 (710)
Q Consensus 491 --~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 567 (710)
.-+...|...-.+..+ +.||.. .-..--.++.+.|++.++-.+++.+-+. .|.+.++... .+.+.|+.-.
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta~ 312 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDTAL 312 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcHH
Confidence 2346666666666554 677744 3344456788999999999999988754 6666555433 3456665332
Q ss_pred H----HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CCchHHHHHHHH
Q 005174 568 A----KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT-GCWDKLAKVRTC 640 (710)
Q Consensus 568 A----~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 640 (710)
. .+-++.|. +.+..+.-.+..+....|++..|....+.+..+.|. ...|..|+++-... |+-+++...+.+
T Consensus 313 dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 313 DRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 2 12233443 235666667778888899999999999999999995 47788999987765 888877665443
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.27 E-value=0.0064 Score=64.47 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=100.6
Q ss_pred CCCCChHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 005174 508 QIKPDHVTMVAVLSACSHS-----GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA--------GLLNKAKEIIT 573 (710)
Q Consensus 508 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 573 (710)
+...|...|..++.+.... +....|..+|++..+ +.|+ ...|..+..+|... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566778898888875432 347789999999986 5898 55666655544332 22345555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 574 KM---P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 574 ~m---~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
+. + ...+...+..+.-.....|+.+.|...++++++++| +...|..++.++...|+.++|.+.+.+...+..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 42 1 233556777777667778999999999999999999 578999999999999999999999988766555
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.00094 Score=49.96 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=50.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..+...++++.|.++++.+++++|+++..+...+.+|.+.|++++|.+.++...+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5677889999999999999999999999999999999999999999999888775433
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.21 E-value=0.00079 Score=52.01 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=50.3
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 005174 491 QGEGRVALKLFEEMNKNQI-KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 568 (710)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . .+.|+ ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4677788888888777432 12344455567777778888888888776 2 22333 34444557777788888888
Q ss_pred HHHHHh
Q 005174 569 KEIITK 574 (710)
Q Consensus 569 ~~~~~~ 574 (710)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.0013 Score=47.79 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 555 MVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
+...+.+.|++++|++.|++. ...| +...|..+..++...|+++.|...++.+++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888877 3344 566777788888888888888888888888888763
No 181
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.16 E-value=0.0056 Score=48.20 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLY 559 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 559 (710)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|...++..... .|. ...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHHH
Confidence 4445555666666666666666665531 112234444555555556666666666555432 222 33445555555
Q ss_pred HhcCCHHHHHHHHHh
Q 005174 560 GRAGLLNKAKEIITK 574 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~ 574 (710)
...|+.++|...+++
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 555555555555544
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.015 Score=54.90 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=85.7
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhhCCCCCchHH
Q 005174 546 FPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIH---RNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 546 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
.|+ .+.|-.|...|.+.|+.+.|..-|.+.. ..++...+..+..++... .+..++..+++++++.+|.+.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 566 8899999999999999999999998772 334677777777664332 3566789999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 620 LIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
.|+-.+...|++.+|...|+.|.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999876653
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.13 E-value=0.076 Score=50.48 Aligned_cols=172 Identities=11% Similarity=0.073 Sum_probs=96.6
Q ss_pred hhhhhhcCChhHHHHHHhhcCCC--Ch-h---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc--
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRR--DE-V---TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH-- 525 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~--~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 525 (710)
...+.+.|++++|.+.|+.+... +. . ..-.++.+|.+.+++++|...|++..+.-..-...-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33445567777777777776643 11 1 1233556677777888888888777764211112233333333221
Q ss_pred c---------------CcH---HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 005174 526 S---------------GLV---VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587 (710)
Q Consensus 526 ~---------------g~~---~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 587 (710)
. .+. .+|...|+.+.+ -|-...-..+|...+..+...--..-+ ..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~e~-~i 181 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKYEL-SV 181 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHHHH-HH
Confidence 0 011 223333333333 333333344444444333200000011 23
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 588 LGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 588 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..-|.+.|.+..|..-++.+++--|+. .+....++.+|...|..++|.++...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345778889888888899999888875 5667788999999999999998876543
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.08 E-value=0.013 Score=50.10 Aligned_cols=94 Identities=12% Similarity=-0.050 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
+....-.+..-+...|++++|..+|+-... +.|. ...|..|..+|-..|++.+|...|..... +.|+ ...+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHH
Confidence 333344444555566666666666666655 2333 33444455555556666666666666653 3455 555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 005174 555 MVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m 575 (710)
+..+|...|+.+.|.+-|+..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666666543
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.07 E-value=0.16 Score=50.19 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 593 (710)
.+.+..+.-|...|....|.++-.+. .+ |+...|...+.+|+..|+|++-.++... +..++-|.-++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35556677777888888777765543 44 8889999999999999999998887664 3355888999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
+|+...|.....+ -.+..-+..|.+.|.|.+|.+.-.+
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9998777766655 1236678899999999999887433
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.06 E-value=0.059 Score=46.77 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=97.8
Q ss_pred CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCH
Q 005174 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP------YTPTS 581 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~p~~ 581 (710)
.-|+...-..|..+....|+..+|...|++... |+-.+ ....-.+.++....++..+|...+++.- -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666778888888888888888888776 55444 6677778888888888888888887762 23443
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
. -.+...+...|..+.|+.+++.+..--|+ +..-...+..+.++|+.++|..-+..+.+
T Consensus 163 ~--Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 H--LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred h--HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3 34567788889999999999999998885 56667778889999999988776555543
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.06 E-value=0.019 Score=56.07 Aligned_cols=126 Identities=10% Similarity=0.166 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhh
Q 005174 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL-CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456 (710)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 456 (710)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 34444444445555555555555554322 1112222222221 12234444455555555554 45666666666666
Q ss_pred hhhcCChhHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 457 YARSGKVPEAKSVFDLMSRR------DEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 457 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
+.+.++.+.|..+|++.... -...|...+.--.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665532 223566666666666666666666666655
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.06 E-value=0.013 Score=46.26 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHhhccC--------cHHHHHHHHHHHHHHhCCCCChhHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQI-KPDHVTMVAVLSACSHSG--------LVVEGQKQFERMTSIYGIFPQLEHF 552 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 552 (710)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+..+.. ++-+.+.+|+.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999999876542 345677889999876 899999999
Q ss_pred HHHHHHHHh
Q 005174 553 ACMVDLYGR 561 (710)
Q Consensus 553 ~~li~~~~~ 561 (710)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999888765
No 189
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.74 Score=49.15 Aligned_cols=338 Identities=12% Similarity=0.049 Sum_probs=167.9
Q ss_pred hcCCChHHHHH-----HHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCC
Q 005174 203 ACHEWSLFVHN-----ALVSMYGKFGQVDVARRLFDKMLERD---AVSWNTMISAYASKGLW--KEAFQLFVEMQEEGVE 272 (710)
Q Consensus 203 ~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~ 272 (710)
-|++.+..-|. .+++-+...+.+..|+++-..+..|- ...|.....-+.+..+. +++++...+=...-.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 44555444443 35666777788888888888886664 34555555555555322 233333333222212
Q ss_pred CceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHH
Q 005174 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY----LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348 (710)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 348 (710)
-...+|..+..-....|+.+-|..+++.=...+-. .+..-+...+.-+...|+.+...+++-++...-..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~------ 578 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR------ 578 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH------
Confidence 35577888888888889998888887654333211 12223555667777777777776666555432110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChHHHHHHHH--HH----HHcCCCCcHHHHHHHHHHH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE-KSIITWNSMLSGYTHLDCAEESAFLFR--EM----FRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~--~m----~~~g~~p~~~t~~~ll~~~ 421 (710)
-+.+....+...|..+|....+ .|..+ +..+-+.++-.+++..|. .. ...|..|+.. ..-.+|
T Consensus 579 ---s~l~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~ 648 (829)
T KOG2280|consen 579 ---SSLFMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAF 648 (829)
T ss_pred ---HHHHHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHH
Confidence 0011111222333333332211 11110 011111122112211111 10 0112223322 233334
Q ss_pred hccCchHHHH----------HHHHHHHH-hCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHh
Q 005174 422 ARVANLQHGK----------EFHCYILR-RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490 (710)
Q Consensus 422 ~~~~~~~~a~----------~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 490 (710)
++.....-.. .+.+.+.. .| ..-.-.+.+--+.-+...|+..+|.++-.+.+-+|-..|-.=+.+++.
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~-~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFG-GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-cccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 3333211111 11111111 11 112222233334445566777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005174 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 570 (710)
.+++++-+++-+.++ .+.-|.-+..+|.+.|+.++|.+++-+... +.-.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHH
Confidence 777776655544432 134555666777777777777777655421 1145667777777777766
Q ss_pred HHHh
Q 005174 571 IITK 574 (710)
Q Consensus 571 ~~~~ 574 (710)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 5444
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.35 Score=47.80 Aligned_cols=147 Identities=13% Similarity=-0.034 Sum_probs=81.6
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCchHHHhHHh--hhhhhcCChhHHHHHHhhcCCCChh---------------HHHHH
Q 005174 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV--EMYARSGKVPEAKSVFDLMSRRDEV---------------TYTSL 484 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l 484 (710)
...++.+.|.++-..+++.. ..+. +..++ .++--.++.+.|...|++..+.++. .|..=
T Consensus 180 ~~~~~~~~a~~ea~~ilkld--~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD--ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhcccchhHHHHHHHHHhcc--cchh--HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 34556666666555555543 1111 11112 1222345566666666665543222 12222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKN---QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYG 560 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 560 (710)
.+-..+.|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|..-.+.... +.|. +..|-.-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHH
Confidence 23345677788888888777652 3444455566666666777788887777766653 4555 444544455566
Q ss_pred hcCCHHHHHHHHHhC
Q 005174 561 RAGLLNKAKEIITKM 575 (710)
Q Consensus 561 ~~g~~~~A~~~~~~m 575 (710)
-.+++++|.+-+++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777777654
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.063 Score=55.58 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=104.1
Q ss_pred HHHHhcCC--hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC
Q 005174 384 SGYTHLDC--AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461 (710)
Q Consensus 384 ~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 461 (710)
.+|.+..+ +-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|.+ .| . -|.-+++|....
T Consensus 606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G-~------enRAlEmyTDlR 672 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SG-H------ENRALEMYTDLR 672 (1081)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cC-c------hhhHHHHHHHHH
Confidence 34444333 44556667888999988988753 3456677888888887753 33 1 234455565656
Q ss_pred ChhHHHHHHhhcCCC--------------ChhHHHHHHHHHHhcCChHHHHHHHH------HHHHCCCCC---ChHHHHH
Q 005174 462 KVPEAKSVFDLMSRR--------------DEVTYTSLIAGYGIQGEGRVALKLFE------EMNKNQIKP---DHVTMVA 518 (710)
Q Consensus 462 ~~~~A~~~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~g~~p---~~~t~~~ 518 (710)
.++.|.++...-... |+.--.+....+...|+.++|..+.- -+.+-+-+. +..+...
T Consensus 673 MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~ 752 (1081)
T KOG1538|consen 673 MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLL 752 (1081)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHH
Confidence 666666655433210 11111223344556677777665432 122222222 3344555
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTS 581 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 581 (710)
+...+-+...+..|-++|.+|-. ...++++....+++++|..+-++.| ..||+
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 55455566667778888888743 4567889999999999999999987 34443
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.91 E-value=0.49 Score=46.42 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCCCC--hh
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-----PDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIY-GIFPQ--LE 550 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 550 (710)
.+..+...+.+.|++++|+++|++....... .+.. .|...+-++...|++..|.+.+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445677788889999999999888764332 2221 23333445667789999999998876431 22223 33
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 005174 551 HFACMVDLYGR--AGLLNKAKEIITKMP 576 (710)
Q Consensus 551 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 576 (710)
....|++++-. ...+++|+.-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45566676653 346777777777775
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.90 E-value=0.0067 Score=60.98 Aligned_cols=66 Identities=17% Similarity=-0.124 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY---YVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+...|+.+..+|...|++++|...++++++++|++... |..++.+|...|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367789999999999999999999999999999998854 999999999999999999998888764
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.82 E-value=0.33 Score=46.20 Aligned_cols=65 Identities=8% Similarity=0.040 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH---HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005174 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW---NTIAGGCLRTGNFKGVLELLSRMRTQE 305 (710)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (710)
...+-.....+.+.|++++|.+.|+++...-... .... -.+..++.+.+++++|...+++..+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3333334444556677777777777776532221 1111 234456667777777777777766553
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.81 E-value=0.023 Score=57.82 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=90.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHH
Q 005174 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEE--GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~ 316 (710)
+......++..+....+.+++..++.+.+.. ....-..|..++++.|.+.|..+.++.+++.=...|+-||.+|++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5556667777777777788888888887654 22223455678899999999999999999888888999999999888
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 005174 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358 (710)
Q Consensus 317 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 358 (710)
|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777666665554444444444
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.81 E-value=0.11 Score=51.01 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=61.1
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--hHHHHHHHHH
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ-GEGRVALKLFEEMNKN----QIKPD--HVTMVAVLSA 522 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a 522 (710)
+...++.|...|++..|-+++.+ +...|... |++++|++.|++..+. | .+. ...+..+...
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 34444556666666666555443 55566666 7777777777775542 2 111 2244555566
Q ss_pred hhccCcHHHHHHHHHHHHHHhC----CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 523 CSHSGLVVEGQKQFERMTSIYG----IFPQL-EHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
+.+.|++++|.++|+++....- .+.+. ..+-..+-++...|+...|.+.+++.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777777777655311 11121 22333444556667777777777765
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.80 E-value=0.0073 Score=44.27 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=37.5
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATL 587 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 587 (710)
..|++++|.++|+.+... .|+ ...+..++.+|.+.|++++|.++++++. ..|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456777777777777654 454 6666667777777777777777777763 34554444333
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.77 E-value=0.043 Score=45.16 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=66.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHH
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVD 557 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 557 (710)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+ |+ ......+..
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHH
Confidence 45667788999999999999998887655 3366677788889999999999999888752 43 222233455
Q ss_pred HHHhcCCHHHHHHHHHh
Q 005174 558 LYGRAGLLNKAKEIITK 574 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~ 574 (710)
++...|+.++|++.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77888999999887754
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.73 E-value=0.0048 Score=45.43 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhCC
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHR-NTGIGEWAAEKLLETRP 612 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 612 (710)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| +++.|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666666666677777776666665 2223 4556666666777777 57777777777777766
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.70 E-value=0.022 Score=51.11 Aligned_cols=98 Identities=15% Similarity=0.289 Sum_probs=75.3
Q ss_pred HHHHHhhc--CCCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC-----------
Q 005174 466 AKSVFDLM--SRRDEVTYTSLIAGYGIQ-----GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG----------- 527 (710)
Q Consensus 466 A~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 527 (710)
-...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 466888888888888754 667777788889999999999999999998775422
Q ss_pred -----cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005174 528 -----LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564 (710)
Q Consensus 528 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 564 (710)
+-+-|..++++|... |+.||.+++..+++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 234578888888664 888888888888888887764
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.24 Score=45.74 Aligned_cols=169 Identities=12% Similarity=0.083 Sum_probs=114.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CC--------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE--KS--------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 418 (710)
++|++.|.-..-+++-...|+.-.. .. ....+.++..+...|.+.-.+.++++.++...+.+......+.
T Consensus 140 esLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lg 219 (366)
T KOG2796|consen 140 ESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLG 219 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHH
Confidence 4555555444444444444443222 12 2344667777777888888888999998876667777778888
Q ss_pred HHHhccCchHHHHHHHHHHHHhCC----CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhc
Q 005174 419 PLCARVANLQHGKEFHCYILRRAM----FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQ 491 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 491 (710)
+.--+.|+.+.|...++.+.+..+ ..-...+.......|.-.+++..|...|+++... |++..|.-.-+..-.
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 888889999999999987765541 2233334444445566678888999999887754 566667666666777
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005174 492 GEGRVALKLFEEMNKNQIKPDHVTMVAV 519 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p~~~t~~~l 519 (710)
|+..+|++..+.|... .|.+.+-+++
T Consensus 300 g~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 300 GKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 8999999999999874 5555544433
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.68 E-value=0.014 Score=55.78 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=41.3
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhc
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQL----EHFACMVDLYGRAGLLNKAKEIITKMP-YTP----TSAMWATLLGACQIH 594 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p----~~~~~~~l~~~~~~~ 594 (710)
.+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+- ..| ....+..+...+...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 4445566666666555544 2331 234445555555555555555554441 111 122333333444445
Q ss_pred CChHHHHHHHHHHHhhCCCC
Q 005174 595 RNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 595 g~~~~a~~~~~~~~~~~p~~ 614 (710)
|+.+.|...++.+++..|++
T Consensus 231 g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCC
Confidence 55555555555555555543
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.61 E-value=0.92 Score=45.54 Aligned_cols=437 Identities=12% Similarity=0.046 Sum_probs=206.3
Q ss_pred HHccCChhHHHHhHhhCCCC---CCcc------HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH--cc
Q 005174 119 YASFSLYNNACFLVENSNIR---YPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC--GE 187 (710)
Q Consensus 119 ~~~~g~~~~A~~~~~~~~~~---~~~~------~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~ 187 (710)
+.+.+++.+|.++|.++-.. ++.. -+.+|++|..+ +.+.....+....+ ..| ...|..+..+. -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHH
Confidence 35678888888888876422 2222 34456666543 23333333333333 223 34455555553 34
Q ss_pred cCCchHHHHHHHHHH-h--cCCC------------hHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHH
Q 005174 188 MMDVDFGRVVHSCID-A--CHEW------------SLFVHNALVSMYGKFGQVDVARRLFDKMLE--------RDAVSWN 244 (710)
Q Consensus 188 ~~~~~~a~~~~~~~~-~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 244 (710)
.+....|.+.+.... . +..+ |...-+..++.+...|.+.+++.++++|.+ -++.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 556666665555444 1 2221 222234455555666666666666666522 1555555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH---cCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 005174 245 TMISAYASKGLWKEAFQLFVEMQE---EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321 (710)
Q Consensus 245 ~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~ 321 (710)
.++-.+.+ ..|-++++ ..+-|| |.-+|-.|.+.=..-+ .-.-..+.|....+..++....
T Consensus 172 ~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHH
Confidence 54433322 12222211 112222 2223333322111000 0000112333333333333222
Q ss_pred ccC--ChHHHHHHHHHHHhhcCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCChhHHHHHHHHHHhcC
Q 005174 322 HVG--ALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMT--------AEKSIITWNSMLSGYTHLD 390 (710)
Q Consensus 322 ~~~--~~~~a~~i~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g 390 (710)
-.. .+.--.+++..-...-+.|+- -+...|+..+.+ +.+++..+-+.+ .+.=+.++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 122222333333333333432 234455555544 344443333322 1223457788888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHH-------HHHHh-ccCch---HHHHHHHHHHHHhCCCCCc-hHHHhHHh---h
Q 005174 391 CAEESAFLFREMFRSGVEPNYVTIASI-------LPLCA-RVANL---QHGKEFHCYILRRAMFNEH-LLLWNSLV---E 455 (710)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~t~~~l-------l~~~~-~~~~~---~~a~~~~~~~~~~~~~~~~-~~~~~~li---~ 455 (710)
+...|-+.+.-+.-. .|+...-..+ -+..+ .-.++ ..=..+|..+... ..| ......|+ .
T Consensus 313 ~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~---DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY---DIDRQQLVHYLVFGAK 387 (549)
T ss_pred hHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHHHH
Confidence 888888877766543 3332211111 11111 11111 1112222222221 111 11122222 2
Q ss_pred hhhhcCC-hhHHHHHHhhcCC---CChhHHHHHH----HHHHhc---CChHHHHHHHHHHHHCCCCCChH----HHHHHH
Q 005174 456 MYARSGK-VPEAKSVFDLMSR---RDEVTYTSLI----AGYGIQ---GEGRVALKLFEEMNKNQIKPDHV----TMVAVL 520 (710)
Q Consensus 456 ~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll 520 (710)
-+-+.|. -++|.+++..+.+ -|..+-|.+. ..|.+. ....+-+++-+-..+.|+.|-.+ .-+.|-
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 2334444 7778888877653 2444333322 223221 22344444444555678777433 233333
Q ss_pred HH--hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 005174 521 SA--CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588 (710)
Q Consensus 521 ~a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~ 588 (710)
+| +...|++.++.-+-.-+. .+.|++.+|..+.-++....++++|..++...| |+...|++-.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dskv 532 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSKV 532 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHHH
Confidence 33 456788888765544443 379999999999999999999999999999987 5777776543
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.28 Score=51.09 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=62.0
Q ss_pred hhhhhHHHHHHHHHhCCCchHHHHH---------HHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHH--HHHHHHHHh
Q 005174 35 IMRINLLETLKDFAGRGNLSKAFEA---------FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGK--QLHACAIAL 103 (710)
Q Consensus 35 ~~~~~~~~ll~~~~~~~~~~~A~~~---------~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~ 103 (710)
+...++.+-+--|...|.+++|..+ |+.+-..... .- .+...=.+|.+.++..--+ .-++.+.+.
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALe--AL--~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALE--AL--DFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHh--hh--hhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3344455556667778888887642 2222221111 11 3344445566655543322 223455556
Q ss_pred CCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHh
Q 005174 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168 (710)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~ 168 (710)
|-.|+.. .+...++-.|++.+|.++|.+ .|.-.+|+++|..|+-
T Consensus 630 ge~P~~i---LlA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM 673 (1081)
T KOG1538|consen 630 GETPNDL---LLADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM 673 (1081)
T ss_pred CCCchHH---HHHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH
Confidence 6556654 345567778999999888864 5777788888877763
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.56 E-value=0.024 Score=46.67 Aligned_cols=90 Identities=11% Similarity=-0.040 Sum_probs=60.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCC---CCchhhHHHHHH
Q 005174 43 TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK---NPVLVPKLVTFY 119 (710)
Q Consensus 43 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 119 (710)
.-.++-..|+.++|+.+|++....|.........+..+...+...|++++|..+++...... +. +..+...+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34556778888899999988888877766555577778888888888888888888777653 21 122223333445
Q ss_pred HccCChhHHHHhHh
Q 005174 120 ASFSLYNNACFLVE 133 (710)
Q Consensus 120 ~~~g~~~~A~~~~~ 133 (710)
...|+.++|...+-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 56677777666553
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.55 E-value=0.0046 Score=40.56 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
.+|..+..++...|+++.|++.++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999988887764
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.52 E-value=0.41 Score=41.82 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=80.1
Q ss_pred CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hHH
Q 005174 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD---HVT 515 (710)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t 515 (710)
..|+...--.|..+....|+..+|...|++... .|....-.+.++....+++..|...++++.+.. |+ +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 345555555666666777777777777766543 366666666677777777777777777766632 22 223
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 571 (710)
...+...+...|...+|+..|+...+ ..|+..........+.++|+.++|..-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 44555667777777778888877765 356665555566677777777766443
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.50 E-value=0.96 Score=44.45 Aligned_cols=245 Identities=12% Similarity=0.045 Sum_probs=110.1
Q ss_pred cCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 358 CKDLRHAYILFKMTAEKSI---ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
.|+.+.|.+-|+.|...-. .-...|.-.-.+.|..+.|..+-...-+.- +--.-.....+...+..|+++.|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 4666666666666654211 111122222234555666655555544331 112234455566666666666666666
Q ss_pred HHHHHhCCCCCchHHHh--HHhhhhh---hcCChhHHHHHHhhcC--CCChhH-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 435 CYILRRAMFNEHLLLWN--SLVEMYA---RSGKVPEAKSVFDLMS--RRDEVT-YTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~--~li~~~~---~~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
+.-.....+.++..--. .|+.+-+ -..+...|...-.+.. .||.+. -..-..++.+.|+..++-.+++.+-+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 65554442333322111 1111100 0112333333332222 233322 22234556666666666666666666
Q ss_pred CCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH
Q 005174 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMW 584 (710)
Q Consensus 507 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 584 (710)
....|+. +... ...+.|+. +..-+++....-.++|+ .+..-.+..+-...|++..|..--+.. ...|....|
T Consensus 292 ~ePHP~i--a~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~ 365 (531)
T COG3898 292 AEPHPDI--ALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAY 365 (531)
T ss_pred cCCChHH--HHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHH
Confidence 4333332 2211 13344432 22222222222235555 555555666666666666555444333 234555555
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHHh
Q 005174 585 ATLLGACQ-IHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 585 ~~l~~~~~-~~g~~~~a~~~~~~~~~ 609 (710)
..|...-. ..||-.+....+-+.++
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhc
Confidence 55555533 33665555555554444
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.024 Score=55.78 Aligned_cols=62 Identities=16% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++..|...|.+.+++..|.+.+.+.++++|+|....+.-+.+|...|.++.|+..++++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 35566777788889999999999999999999999999999999999999999999998875
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.37 E-value=0.055 Score=51.86 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH----VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
.|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.|.-.|. ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445668888888888888874 3443 35566777788888888888888888876544443 555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 005174 555 MVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m 575 (710)
+...|...|+.++|.+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 677788888888888888776
No 211
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=2.1 Score=46.54 Aligned_cols=150 Identities=10% Similarity=0.076 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCC
Q 005174 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290 (710)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 290 (710)
+.....+.+.+.|++++|...|-+-..--.. ..+|.-|....++.+-..+++.+.+.|+. +...-..|+.+|.+.++
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 4445556667789999998877655321111 23456666677777777888888888876 55566788999999999
Q ss_pred hHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370 (710)
Q Consensus 291 ~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (710)
.++-.++.+.-. .|.. .+-+-..+..|.+.+-+++|..+-..... ... .|--.+-..+++++|.+.+..
T Consensus 447 ~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~---vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEW---VLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHH---HHHHHHHHhcCHHHHHHHHhc
Confidence 988888877655 3322 11244566677777777777655443322 222 222334556889999999998
Q ss_pred cCCC
Q 005174 371 TAEK 374 (710)
Q Consensus 371 ~~~~ 374 (710)
++-+
T Consensus 516 lp~~ 519 (933)
T KOG2114|consen 516 LPIS 519 (933)
T ss_pred CCHH
Confidence 8754
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.31 E-value=0.015 Score=43.38 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 005174 557 DLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
..|.+.+++++|.++++++- ..| +...|......+...|+++.|.+.++.+++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56778888888888888772 334 5666777777788888888888888888888887755443
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.3 Score=45.10 Aligned_cols=138 Identities=9% Similarity=0.000 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHh----CCCCChhHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY----GIFPQLEHFACM 555 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 555 (710)
..+.++..+.-.|.+.-.+.++++.++...+-++.....|.+.-.+.|+.+.|..+|+...+.. ++.-..-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566777777888888888999998886656667777888888888899999999999765542 222223333344
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 556 VDLYGRAGLLNKAKEIITKMPYT-P-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
...|.-++++-+|...+++.+.. | |+..-|.-.-...-.|+...|.+..+.+++..|....+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 45556677788888888777522 2 33333332222333466666777777777777754433
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.25 E-value=0.52 Score=43.54 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=50.7
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhC
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG 104 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 104 (710)
+...+-.....+...|++.+|+..|+.+...-+...........++.++-+.|++..|...++..++.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344455566677889999999999999988766555554577788888888999999999998888764
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.18 E-value=0.047 Score=53.37 Aligned_cols=128 Identities=13% Similarity=-0.010 Sum_probs=88.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHH----hCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC-------CC--Chh
Q 005174 413 TIASILPLCARVANLQHGKEFHCYILR----RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-------RR--DEV 479 (710)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~ 479 (710)
.|..+-+.|.-.|+++.+...|+.-+. -|.-......+..|.+++.-.|+++.|.+.|+.-. .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555555667888998888766443 23222334577888889999999999998887533 23 334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCChHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNK----NQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
+.-+|.+.|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 667788888888899999988876442 11 12235578889999999998888887665543
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.15 E-value=0.044 Score=44.40 Aligned_cols=91 Identities=16% Similarity=0.101 Sum_probs=73.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC----CchHHHHHHHHHhcC
Q 005174 556 VDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN----SGYYVLIANMYAATG 629 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 629 (710)
.-+++..|+++.|++.|.+.- .+.+...||.-..+++..|+.++|..-+++++++.-+. ...|+.-+-+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 346778889999998888762 23477888999999999999999999999998885432 456888888999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 005174 630 CWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 630 ~~~~A~~~~~~m~~~~~ 646 (710)
+.|.|..-|......|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999998888877766
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.10 E-value=0.58 Score=46.81 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=97.1
Q ss_pred HHhhhhhhcCChhHHHHHHhhcCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 452 SLVEMYARSGKVPEAKSVFDLMSRR-------DEVTYTSLIAGYGI---QGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
.++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|+.++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444466666677777777666543 11111223444555 7888888888888666666777777776665
Q ss_pred Hhh---------ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH----HHHHHH---Hh-C----CCCCC
Q 005174 522 ACS---------HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN----KAKEII---TK-M----PYTPT 580 (710)
Q Consensus 522 a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-m----~~~p~ 580 (710)
.|- .....++|...|.+.- .+.|+..+--.++..+.-.|... +..++- .. . ...+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 442 1223677777777653 56677544434444455555322 222222 11 1 12334
Q ss_pred HHHH--HHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 581 SAMW--ATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 581 ~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
...| .+++.++.-.||.+.|.++++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 4444 578888999999999999999999998765
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.05 E-value=0.092 Score=43.71 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005174 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 556 (710)
..|+..+..+++.+|+..|++..|.++.+...+.|++.-+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555555555555555555555555555555555444444444443
No 219
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.01 E-value=0.042 Score=50.93 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=66.8
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcC-----------
Q 005174 228 ARRLFDKML--ERDAVSWNTMISAYASK-----GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG----------- 289 (710)
Q Consensus 228 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------- 289 (710)
....|.... ++|-.+|-+.+..+... +.++-....+..|.+.|+..|..+|+.|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 56888888888877654 566767777889999999999999999998775432
Q ss_pred -----ChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 005174 290 -----NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324 (710)
Q Consensus 290 -----~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~ 324 (710)
+-+-+++++++|...|+.||..+-..+++++.+.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 22335566666666666666666555555555544
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.00 E-value=0.71 Score=42.64 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCC--CceehHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005174 247 ISAYASKGLWKEAFQLFVEMQEEGVE--VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304 (710)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (710)
...+.+.|++.+|.+.|+.+...-.. --....-.++.++.+.|+++.|...+++....
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455566666666666666543111 11223334455566666666666666665543
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.99 E-value=2 Score=43.13 Aligned_cols=130 Identities=13% Similarity=0.055 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhH-HHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH-FACMVD 557 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~ 557 (710)
.|-..++.-.+..-.+.|..+|-+..+.| +.++...+++++..+ ..|+..-|..+|+.-... -||... -+-.+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHHHH
Confidence 45555555556666666777777777666 455666666666544 345666666666655443 344222 234555
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 558 LYGRAGLLNKAKEIITKMP--YTPT--SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.+.+.++-+.|..+|+..- ...+ ...|..+|.--..-|+...+...-+++.+..|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 6666677777777776441 1122 346666666666667766666666666666665
No 222
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=95.92 E-value=0.0064 Score=49.76 Aligned_cols=40 Identities=33% Similarity=0.695 Sum_probs=31.4
Q ss_pred CeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHHcCcccCCccccH
Q 005174 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSE 702 (710)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~~~~~~~~~ 702 (710)
|+||+++ |.|++||.+||+. ++..+++..||.|++..+..
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~ 41 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGH 41 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCC
Confidence 7899988 9999999999998 34455666777777776543
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.91 E-value=0.15 Score=44.32 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=69.9
Q ss_pred hccCcHHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYG--IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGE 601 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~ 601 (710)
...++.+.+...++++...+. +-|+... ..-.......++.+ -......++..+...|+++.+.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence 455677777777777766542 2222111 11122222233332 1235556777788999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 602 WAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..++.++..+|-+-..|..++.+|.+.|+..+|.+++..+.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998774
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.87 E-value=0.012 Score=44.62 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHH
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
++..++.+|...|++++|++.+++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555555555554443
No 225
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=4.2 Score=44.39 Aligned_cols=83 Identities=10% Similarity=0.072 Sum_probs=39.6
Q ss_pred HHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCc--cHHHHHHHHHhCCCch
Q 005174 80 IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL--PWNLLISLYVRDGFYA 157 (710)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~ 157 (710)
+++-+-....+..-...++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+... .... -....+..+.+.+-.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLD 480 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHH
Confidence 333344444444444555555555532 33334556666666666666555555444 1111 1334444454455455
Q ss_pred HHHHHHH
Q 005174 158 EALCVYK 164 (710)
Q Consensus 158 ~A~~l~~ 164 (710)
+|..+-.
T Consensus 481 ~a~~LA~ 487 (933)
T KOG2114|consen 481 EAELLAT 487 (933)
T ss_pred HHHHHHH
Confidence 5544433
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.62 E-value=2.2 Score=43.48 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=38.6
Q ss_pred CCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--RDE----VTYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
+.+...++.+..+|.+.|++++|...|++..+ |+. .+|..+..+|...|+.++|+..+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455666666666666666666666665442 321 2366666666666666666666666665
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.60 E-value=0.02 Score=43.31 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-----Y---TPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
..+|+.+...|.+.|++++|++.+++.- . .|+ ..++..+...+...|+++.|.+.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678999999999999999999998761 2 233 457788889999999999999999998876
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.28 E-value=3.8 Score=41.41 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=58.0
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 569 KEIITKMPYTP----TSAMWATLLGA--CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 569 ~~~~~~m~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..++++....| +...-|.|..| ...+|++.++.-....+.++.| ++.+|..+|-++....+++||.++++.++
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34445554333 44566777777 5689999999999999999999 89999999999999999999999977643
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=95.28 E-value=0.28 Score=49.77 Aligned_cols=141 Identities=11% Similarity=0.081 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHH-CCCCCChH-HHHHHHHHhhc---------cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh
Q 005174 494 GRVALKLFEEMNK-NQIKPDHV-TMVAVLSACSH---------SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGR 561 (710)
Q Consensus 494 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 561 (710)
.+.|+.+|.+... ..+.|+.. .|..+-.++.. .....+|.++-++..+ +.|+ ......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4566777777662 22455533 33333332211 1123344444444443 3443 4445555555555
Q ss_pred cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH--HHHHHHHhcCCchHHHHH
Q 005174 562 AGLLNKAKEIITKMP-YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV--LIANMYAATGCWDKLAKV 637 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~ 637 (710)
.|+++.|...|++.. ..|| ...|......+...|+.+.|.+.+++.++++|.....-. ..++.|+.. .+++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 566666666666652 3443 334444445555566666666666666666665433322 222333333 34555554
Q ss_pred H
Q 005174 638 R 638 (710)
Q Consensus 638 ~ 638 (710)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 3
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.24 E-value=0.17 Score=42.10 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=39.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 005174 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKM----PYTPTSAMWATLLGACQIH 594 (710)
Q Consensus 544 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~ 594 (710)
.+.|+.....+++.+|+..|++..|+++++.. +++-+...|..|+.-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 56788888999999999999999999888766 3444688888888554433
No 231
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.16 E-value=5.1 Score=42.15 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=120.2
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK--PDHVTMVAVL 520 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll 520 (710)
+...|+..++--.+.|+.+.+.-.|++..-+ -...|--.+.-....|+.+-|..++....+--++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556777777777888888888888877654 2334555555455558888888777766554333 2222333333
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----H
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAK---EIITKM-PYTPTSAMWATLLG-----A 590 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~l~~-----~ 590 (710)
+-..|+++.|..+++.+.+. . |+ ...-..-+....+.|+.+.+. +++... +..-+......+.- -
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 45678999999999999886 4 77 444555677788899998888 444443 22222222222221 1
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
+...++.+.|..++..+.+..|++...|..+++.....+-
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 3456788889999999999999999999999988876663
No 232
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.16 E-value=7.7 Score=44.26 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=56.0
Q ss_pred CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH----hhccCcHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA----CSHSGLVVEGQKQF 536 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a----~~~~g~~~~a~~~~ 536 (710)
++++.|...+.++. ...|.-.++.--++|.+.+|+.++ +|+...+.-+..+ |...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555554444 223333344444555555555553 4454444433333 33344555555555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHH
Q 005174 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW--ATLLGACQIHRNTGIGE 601 (710)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~l~~~~~~~g~~~~a~ 601 (710)
+..-+ ..--+.+|..+|++.+|+.+-.++....|...- ..|..-+...++.-+|-
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHH
Confidence 44311 122345555666666666666665433333321 34555555555543333
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.24 Score=48.94 Aligned_cols=138 Identities=14% Similarity=-0.008 Sum_probs=98.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 564 (710)
.+.|.+.|++..|..-|++.... |. +...-+.++...... .-..++..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677778888888877776541 11 111111122222111 123357788889999999
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH-HHHHHHH
Q 005174 565 LNKAKEIITKM-P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL-AKVRTCM 641 (710)
Q Consensus 565 ~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 641 (710)
+.+|++..++. . .++|.-.+..-..+|...|+++.|+..++++++++|+|..+...|+.+--+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888876 2 3457777777788999999999999999999999999988888888887777665544 7788888
Q ss_pred HhC
Q 005174 642 RDL 644 (710)
Q Consensus 642 ~~~ 644 (710)
-..
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 643
No 234
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.31 Score=46.35 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=40.8
Q ss_pred HHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHcc---CChhHHHHhHhhCCC---CCCccHHHHHHH
Q 005174 76 SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF---SLYNNACFLVENSNI---RYPLPWNLLISL 149 (710)
Q Consensus 76 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~ 149 (710)
.+..|..+|...++...|..-|....+.. ++++..+..+..++... ....++..+|++... .|+.+-..|...
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~ 236 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFA 236 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34444444444444444444444444432 33333333333332221 123444445544332 223334444455
Q ss_pred HHhCCCchHHHHHHHHHHh
Q 005174 150 YVRDGFYAEALCVYKQMQS 168 (710)
Q Consensus 150 ~~~~~~~~~A~~l~~~m~~ 168 (710)
+...|++.+|...|+.|.+
T Consensus 237 afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 237 AFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 5556666666666666655
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.94 E-value=0.69 Score=39.00 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 555 MVDLYGRAGLLNKAKEIITKMP----YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
-.....+.|++++|.+.|+.+. ..| ....--.|+.++...|+++.|...++.++++.|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3444556788888888887762 222 2344556778888889999999999999999887643
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.82 E-value=1.3 Score=44.51 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=22.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005174 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (710)
|-..+.+++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445667777788888888888888888654
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.78 E-value=0.31 Score=42.25 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH----HhCCCCChhH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS----IYGIFPQLEH 551 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 551 (710)
....++..+...|++++|+.+.+++.... +-|...|..+|.++...|+..+|.++|+.+.. ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666677777888888877777642 33566777778888888888888777776643 3477777544
No 238
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.62 E-value=11 Score=43.23 Aligned_cols=93 Identities=24% Similarity=0.217 Sum_probs=60.7
Q ss_pred hhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH--HHHHHHHhhccCcHHH
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT--MVAVLSACSHSGLVVE 531 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~ 531 (710)
.-+|.++|+.++|.+ +|...|+|.+|+.+..+|.. .-|... --.|..-+...++.-+
T Consensus 959 al~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchh
Confidence 345666666666654 55667888888888877753 222222 2456666777788777
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 532 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
|-++..+..++ ..--+..|++...+++|..+.....
T Consensus 1018 Aa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1018 AAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 77777766543 3345667788888888888777654
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=1.3 Score=42.09 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=85.9
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCh
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL---LGACQIHRNT 597 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l---~~~~~~~g~~ 597 (710)
.....|++.++..+|+..... .|. ...--.|+.+|...|+.+.|..++..+|..-...-|..+ +....+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 356778999999999988764 444 667778899999999999999999999854444444332 2223333332
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.. ...++.-..-+|+|...-..++..|...|+.++|.+.+-.+..
T Consensus 220 ~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 2345556677999999999999999999999999987666643
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.46 E-value=1.5 Score=37.59 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=29.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA-GLLNKAKEIITKMPYTPTSAMWATLLGAC 591 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~l~~~~ 591 (710)
...++..|.+.+.++++..++.++.. +...++.+... ++.+.|.+++.+- .+...|..++..|
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33455555555555555555544421 22223333333 5556666655552 2444555555444
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.40 E-value=6.4 Score=39.75 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=96.3
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH-HHHH
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM-VAVL 520 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll 520 (710)
..+|..+++.-.+..-++.|..+|-++.+ +++..++++|..++. |+..-|..+|+-=... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34566677777777788888888887764 367778888877664 6677788888764432 3454433 3455
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQIHRN 596 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~g~ 596 (710)
.-+...++-+.|+.+|+....+ +..+ ...|..+|+-=..-|++..|..+=++|. .-|...+-..+.+-|....+
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhcc
Confidence 5566778888888888876654 3444 6678888888888888888877766663 33554444444444544433
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.36 E-value=8.6 Score=41.08 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCceehHHHHHHHHHhcCChHHHHHHHH
Q 005174 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV--EVNVITWNTIAGGCLRTGNFKGVLELLS 299 (710)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (710)
.|.+++|.+++-.+-.+|.. |..+.+.|++-...++++.-- .+. ..-...|+.+...+.....|++|.+.|.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888776643 455566677766666654310 000 0013456777777777777777777765
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 005174 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379 (710)
Q Consensus 300 ~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (710)
.-... ...+.++.+..+++.-+.+. ..++.+....-.+.+++.+.|.-++|.+.|-+-..|.
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---- 882 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---- 882 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH----
Confidence 54321 11223333333333222221 2234455555667777777777777776665544332
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 005174 380 NSMLSGYTHLDCAEESAFLFREM 402 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m 402 (710)
.-+..|...+++.+|.++-+..
T Consensus 883 -aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhc
Confidence 2244566667777777665543
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.35 E-value=3.9 Score=39.98 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=75.0
Q ss_pred HhhhhhhcCChhHHHHHHhhcCC-------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCChHHH---
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSR-------R--DEVTYTSLIAGYGIQGEGRVALKLFEEMNK----NQIKPDHVTM--- 516 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~--- 516 (710)
+..+..-.+.++++.+.|+...+ + ....+..|...|.+..++++|+-+..+..+ -+++-=..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555566666666665432 1 234677777888888888887766665443 1222111122
Q ss_pred --HHHHHHhhccCcHHHHHHHHHHHHHH---hCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 517 --VAVLSACSHSGLVVEGQKQFERMTSI---YGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 517 --~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
..+--++...|.+..|.+..++..+. .|-.|. .....++.+.|...|+.|.|..-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22334566777777777777665443 244444 556678889999999998887777653
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=0.35 Score=45.43 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=50.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKM----PYTP-TSAMWATLL 588 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~l~ 588 (710)
.|+.-+.. .+.|++..|.+.|....+.|.-.+ ....+..|..++...|++++|..+|..+ |..| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 355667777777777776531111 1233445666666666666666665554 2111 123333344
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
......|+.+.|...++.+.+--|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 44444555555555555555555544
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.27 E-value=2.8 Score=35.91 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 005174 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322 (710)
Q Consensus 243 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~ 322 (710)
-..++..+.+.+.......+++.+...|. .+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666677777777777666553 45566777777776553 3334444442 1223334445555655
Q ss_pred cCChHHHHHHHH
Q 005174 323 VGALKLGKEIHG 334 (710)
Q Consensus 323 ~~~~~~a~~i~~ 334 (710)
.+.++.+..++.
T Consensus 82 ~~l~~~~~~l~~ 93 (140)
T smart00299 82 AKLYEEAVELYK 93 (140)
T ss_pred cCcHHHHHHHHH
Confidence 555554444443
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.09 E-value=0.79 Score=44.50 Aligned_cols=46 Identities=2% Similarity=0.098 Sum_probs=21.6
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccCchHHHH
Q 005174 386 YTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGK 431 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~ 431 (710)
+.+..+.++|+..+.+-..+- ..--..+|..+..+.+..|.++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 345566666666666554431 1111234444444444444444443
No 247
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.08 E-value=3.6 Score=37.19 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
+..||-+.--+...|+++.|.+.|+...+....- ..++..-.-++.-.|++.-|.+-+...-+ -.|+.......+-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWLY 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHHH
Confidence 4567777777777888888888888777642221 22222222234566777777665554433 2444222222222
Q ss_pred HHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHhcC
Q 005174 558 LYGRAGLLNKAKEI-ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN-------SGYYVLIANMYAATG 629 (710)
Q Consensus 558 ~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 629 (710)
.--+.-+..+|..- .++.. .-|..-|...|-.+....-. -+.+++.+.+-..++ .++|..|+.-|...|
T Consensus 175 l~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKIS--EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhcc--HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 22233456666543 34433 34666676665544322211 123334444333332 578999999999999
Q ss_pred CchHHHHHHHHHHh
Q 005174 630 CWDKLAKVRTCMRD 643 (710)
Q Consensus 630 ~~~~A~~~~~~m~~ 643 (710)
..++|..+++....
T Consensus 252 ~~~~A~~LfKLaia 265 (297)
T COG4785 252 DLDEATALFKLAVA 265 (297)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999987654
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.06 E-value=0.68 Score=43.51 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIK--PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMV 556 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 556 (710)
.|+.-+..| +.|++..|...|...++.... -....+--|..++...|++++|..+|..+.+.++-.|. ++.+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 567799999999999875211 01224455788899999999999999999998777777 68888999
Q ss_pred HHHHhcCCHHHHHHHHHhCC
Q 005174 557 DLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~ 576 (710)
....+.|+.++|...|++..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999998873
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.06 E-value=2.6 Score=44.62 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=69.1
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPY------TPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~l~~~~~~~g~~~ 598 (710)
....+.+.++++.+... -|+...|. .-...+...|++++|++.|++.-. +-....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 44566777777777654 46643332 334555667777777777775420 112233344555566677777
Q ss_pred HHHHHHHHHHhhCCCCCchHH-HHHHHHHhcCCc-------hHHHHHHHHHHhCC
Q 005174 599 IGEWAAEKLLETRPENSGYYV-LIANMYAATGCW-------DKLAKVRTCMRDLG 645 (710)
Q Consensus 599 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~m~~~~ 645 (710)
+|...+..+.+...-....|. ..+-+|...|+. ++|.+++.+.....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 777777777765544444443 444556677777 77777777665443
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.03 E-value=0.12 Score=33.79 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=26.2
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 615 SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
|..+..++.+|.+.|++++|++++++..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999875
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.87 E-value=5.5 Score=42.19 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=52.4
Q ss_pred hhhhhcCChhHHHHHHhhcCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh-hcc
Q 005174 455 EMYARSGKVPEAKSVFDLMSRR-------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC-SHS 526 (710)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~ 526 (710)
..+...|++++|.+.|++.... ....+--+.-.+....++++|...|.++.+.. +-+..+|.-+..+| ...
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l 353 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLML 353 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 3445566666666666654421 23344455666777889999999999998743 33444555444444 345
Q ss_pred CcH-------HHHHHHHHHHHH
Q 005174 527 GLV-------VEGQKQFERMTS 541 (710)
Q Consensus 527 g~~-------~~a~~~~~~~~~ 541 (710)
|+. ++|.++|.++..
T Consensus 354 ~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 354 GREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ccchhhhhhHHHHHHHHHHHHH
Confidence 666 667777766543
No 252
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=12 Score=40.78 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=22.3
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 005174 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 561 ~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~ 598 (710)
+.+++++|+++.++ ..|...|..||+-+...-.+-
T Consensus 673 el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~ 707 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFI 707 (846)
T ss_pred HhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHH
Confidence 33444455554444 568999999998876655443
No 253
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.78 E-value=10 Score=39.93 Aligned_cols=122 Identities=10% Similarity=0.003 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 005174 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420 (710)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 420 (710)
+..+|...++.-.+.|+.+.+.-+|++..-+- ...|-..+.-....|+.+-|..++..-.+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34567777788888888888888888766542 134544444444557777777766665554333222222112223
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (710)
+-..|+...|..+++.+...- +.-..+-..-+.+.-+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 445677777777777777653 222333333344555566666555
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.73 E-value=4.4 Score=35.50 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHH
Q 005174 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317 (710)
Q Consensus 260 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l 317 (710)
++.++.+.+.|+.|+...|..++..+.+.|++.. +..+...++-+|.......+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHH
Confidence 3555666677888888888889999888887544 44555666777766655444
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=93.69 E-value=3.2 Score=42.44 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=62.3
Q ss_pred hhHHHHHHhhcC---CCC---hhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC
Q 005174 463 VPEAKSVFDLMS---RRD---EVTYTSLIAGYGIQ---------GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527 (710)
Q Consensus 463 ~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 527 (710)
.+.|..+|.+.. ..| ...|..+..++... ....+|.++-++..+.+ .-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 455666666655 333 44555554444322 12345555555555543 234555555555555556
Q ss_pred cHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCC
Q 005174 528 LVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK-MPYTP 579 (710)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p 579 (710)
+++.|...|++... +.|+ ...|........-+|+.++|.+.+++ +...|
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 66677777766653 5666 45555555556666777777766666 34444
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.67 E-value=6.1 Score=36.89 Aligned_cols=193 Identities=18% Similarity=0.099 Sum_probs=112.8
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
..........+...+.+..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34455555556666666666666655432 2344555555666666667777777776665433321 11222222
Q ss_pred -HhhccCcHHHHHHHHHHHHHHhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHh
Q 005174 522 -ACSHSGLVVEGQKQFERMTSIYGIFP----QLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT--SAMWATLLGACQI 593 (710)
Q Consensus 522 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~l~~~~~~ 593 (710)
.+...|+++.+...+..... ..| ....+......+...++.++|...+.+.. ..++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56667777777777777633 233 23334444444566777777777776652 2222 4556666666777
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++.+.+...+.......|.....+..++..+...|.++++...+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777776555666666666666667777766665543
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.59 E-value=6.4 Score=36.89 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=41.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 588 LGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 588 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..-|.+.|....|..-++.+++--|+. .+.+..|..+|...|..++|.+..+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 355778888777777777777766554 44567778889999999999887666543
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.54 E-value=0.72 Score=43.14 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=82.1
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc---------
Q 005174 465 EAKSVFDLMS--RRDEVTYTSLIAGYGIQ-----GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL--------- 528 (710)
Q Consensus 465 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--------- 528 (710)
..++.|..+. ++|-.+|-.++..+..+ +..+-....++.|.+-|+.-|..+|..||..+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 66888888888887654 4566667778899999999999999999987755432
Q ss_pred -------HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 005174 529 -------VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL-NKAKEIITKM 575 (710)
Q Consensus 529 -------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 575 (710)
-.=+..+++.|... |+.||.++-..|++++++.|.. .+..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 12367889999664 9999999999999999998864 3444444444
No 259
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.45 E-value=0.24 Score=29.90 Aligned_cols=32 Identities=31% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.|..+...+...|+++.|.+.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566677777777777777777777777764
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.36 E-value=0.18 Score=30.53 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.+|..+...+...|+++.|...++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777777888888888888888888775
No 261
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=15 Score=39.95 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccC---CchHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 005174 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM---DVDFGRVVHSCIDACHEWSLFVHNALVSMY 219 (710)
Q Consensus 143 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~g~~~~~~~~~~li~~~ 219 (710)
-..+|.-++..+.+..|+++-+.+...-.+- ...|.....-+.+.. +.+.+..+-+.+.... .+...|..+..--
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence 4456788888888888988888775432222 455555555554443 2222333333333112 3445666677767
Q ss_pred HhcCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005174 220 GKFGQVDVARRLFDKMLER--------DAVSWNTMISAYASKGLWKEAFQLFVEMQE 268 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (710)
..+|+.+-|..+++.=+.. +..-+..-+.-+.+.|+.+-...++-.|..
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 7789999999888764332 222355566667777777777766666543
No 262
>PRK15331 chaperone protein SicA; Provisional
Probab=92.69 E-value=1.2 Score=38.58 Aligned_cols=95 Identities=18% Similarity=0.027 Sum_probs=51.1
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
.....-+..-.+-..|++++|..+|+-+...++.-.. -+..|..+|-..+.++.|...+......+ ..|+...-..
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~a 111 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFT 111 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchH
Confidence 3344444444455666666666666666554322211 23444444445566666666666655544 3444445555
Q ss_pred HHHHHccCChhHHHHhHhh
Q 005174 116 VTFYASFSLYNNACFLVEN 134 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~ 134 (710)
..+|...|+...|+..|..
T Consensus 112 gqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 5566666666666666554
No 263
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.66 E-value=0.75 Score=40.72 Aligned_cols=90 Identities=11% Similarity=0.016 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 557 DLYGRAGLLNKAKEIITKMP--YTP-----TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~--~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
+-+.+.|++++|..-|...- .++ ..+.|..-..+..+.+..+.|+..+.++++++|..-.+....+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 33445566666655555431 111 22334444455667788888999999999999988888888899999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 005174 630 CWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 630 ~~~~A~~~~~~m~~~~~ 646 (710)
++++|++-++.+.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999887544
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.65 E-value=5.1 Score=33.11 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=72.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
.-.|..++..++..+.... .+..-++-+|--....-+=+-..+.++.+-+-|.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456677777777776652 13334444443222222333334444444322111 223444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
..-+-.+. .+....+.-+.+....|.-+.-.+.+..+.+-+..+|+....++.+|.+.|...+|-+++++.-+.|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 43333332 233344555667777788777777777776555557888899999999999999999998888887773
No 265
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.58 E-value=0.42 Score=45.82 Aligned_cols=79 Identities=13% Similarity=0.010 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 005174 559 YGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 636 (710)
|.++|.+++|+..|.+. ...| |.+++..-..+|.+.+.+..|+.-++.++.++..-...|...+.+-...|+..||.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444455554444332 2333 444444444444444444444444444444443333344444444444444444444
Q ss_pred H
Q 005174 637 V 637 (710)
Q Consensus 637 ~ 637 (710)
-
T Consensus 187 D 187 (536)
T KOG4648|consen 187 D 187 (536)
T ss_pred h
Confidence 3
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.54 E-value=1.7 Score=45.29 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=62.7
Q ss_pred HHhcCChHHHHHHHH--HHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 005174 488 YGIQGEGRVALKLFE--EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 565 (710)
..-+|+++++.++.. ++.. .+ ...-...++.-+.+.|..+.|+++...-..+ .+...++|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 344566666555543 1111 11 1333555666666667666666655443332 3445566777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005174 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 566 ~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
+.|.++.++.. +...|..|...+..+|+++.|++++++... +..|.-+|...|+-+.-.++.
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHH
Confidence 77766665543 566777777777777777766666665432 455555666666655444443
No 267
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.39 E-value=21 Score=39.55 Aligned_cols=113 Identities=9% Similarity=-0.029 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHC-CCCCChH--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005174 492 GEGRVALKLFEEMNKN-QIKPDHV--TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
.+.+.|..++.+.... ++.+... ....+.......+...++...++..... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 4456666666665432 2222211 2222222222222144555555543221 12333333334444466677776
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 569 KEIITKMPY--TPTSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 569 ~~~~~~m~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
...+..|+. .-...-..-+..+....|+.+.|...++.+
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667766641 111122223445545566666666666665
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.21 E-value=4.2 Score=42.41 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=72.3
Q ss_pred HHHhCCChHHHHHHHH-HHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChH
Q 005174 249 AYASKGLWKEAFQLFV-EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327 (710)
Q Consensus 249 ~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~ 327 (710)
...-.++++++.++.+ .-.-..++ ..-.+.++..+-+.|..+.|+++..+-..
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------------------ 323 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH------------------------ 323 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------------------
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------------------
Confidence 3445677777666664 11111121 23366666666667777777666443321
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005174 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407 (710)
Q Consensus 328 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 407 (710)
-.+...++|+++.|.++-++.. +...|..|.....+.|+.+-|.+.|.+...
T Consensus 324 -----------------------rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--- 375 (443)
T PF04053_consen 324 -----------------------RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--- 375 (443)
T ss_dssp -----------------------HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----
T ss_pred -----------------------HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---
Confidence 2233345566666665554443 344666666666666666666666655321
Q ss_pred CCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHh
Q 005174 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471 (710)
Q Consensus 408 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 471 (710)
+..++-.|...|+.+.-.++.......|. +|....++...|++++..+++.
T Consensus 376 ------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 376 ------FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ------ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444455555555555555554441 3333333444455555444443
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.09 E-value=5.9 Score=34.28 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=71.9
Q ss_pred HHHHHHHHH---hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 005174 514 VTMVAVLSA---CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLL 588 (710)
Q Consensus 514 ~t~~~ll~a---~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~ 588 (710)
.+...|+.. -...++.+++..++..+.- +.|. ...-..-...+.+.|++.+|+.+|+++. ..|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 344444443 3566789999999998874 6887 4445555677889999999999999985 345555566777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 634 (710)
..|.....-..=....+.+++-.++ +.+ ..++..+.+......|
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGAD-PDA-RALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCC-hHH-HHHHHHHHHhccccch
Confidence 7776544333345555556665542 333 3344444443333333
No 270
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=12 Score=35.84 Aligned_cols=28 Identities=11% Similarity=-0.166 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 005174 344 YENVRNALITMYSRCKDLRHAYILFKMT 371 (710)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (710)
|...--.|...|...|+.++|.+.+-.+
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555566666666665554443
No 271
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.88 E-value=4.9 Score=33.03 Aligned_cols=86 Identities=16% Similarity=0.050 Sum_probs=40.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCH
Q 005174 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLL 565 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 565 (710)
++..|+.+.|++.|.+.+.. .+-....|+.-..++.-.|+.++|..=+++..+..|-+-. ...|.--...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34455555555555555542 1223445555555555555555555555555543222211 11122222334445555
Q ss_pred HHHHHHHHh
Q 005174 566 NKAKEIITK 574 (710)
Q Consensus 566 ~~A~~~~~~ 574 (710)
+.|..-|+.
T Consensus 132 d~AR~DFe~ 140 (175)
T KOG4555|consen 132 DAARADFEA 140 (175)
T ss_pred HHHHHhHHH
Confidence 555554444
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.67 E-value=11 Score=34.98 Aligned_cols=197 Identities=18% Similarity=0.105 Sum_probs=124.5
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC--C-hhHHHHHHH-HH
Q 005174 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR--D-EVTYTSLIA-GY 488 (710)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~-~~ 488 (710)
.+......+...+.+..+...+...............+..+...+...++...+...+...... + ......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3333444444444444444444444432003344455555556666666677777777665542 1 122333333 67
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKP----DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAG 563 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 563 (710)
...|+++.|...|.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...+
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 888899999999988855 333 2334444444466778899999999888764 233 3677888888888899
Q ss_pred CHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 564 LLNKAKEIITKMP-YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 564 ~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
++++|...+.... ..|+ ...+..+...+...++.+.+...++...+..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999998888773 3343 455555666655667788888899999888886
No 273
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.54 E-value=23 Score=39.06 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=38.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh---
Q 005174 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR--- 459 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 459 (710)
...+.-.|+++.|++.+.. ..+...|.+.+...+..+.-.+-.+... ..+.....-.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445667888888887766 3344566777666666554332222111 1111111011112345666666665
Q ss_pred cCChhHHHHHHhhcC
Q 005174 460 SGKVPEAKSVFDLMS 474 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~ 474 (710)
..++.+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 456677777766554
No 274
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=11 Score=34.61 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHhcCCHHHHHHHHHhCC---CCCCHHHHH---HHHHH--HHhc-CChHHHHHHHHHHHhhCCCCCch--HHHHHHHH
Q 005174 559 YGRAGLLNKAKEIITKMP---YTPTSAMWA---TLLGA--CQIH-RNTGIGEWAAEKLLETRPENSGY--YVLIANMY 625 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~---~~p~~~~~~---~l~~~--~~~~-g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~ 625 (710)
-+..+++.+|+++|++.. ...+..-|. -++.+ |... .|.-.+.+++++..+++|.-..+ +..|-++.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 356678888888888763 222222222 23322 4443 67667889999999999974333 33444443
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.27 E-value=0.3 Score=30.11 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999998743
No 276
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.10 E-value=7.8 Score=32.06 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=70.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHH
Q 005174 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467 (710)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (710)
-.|..++..+++.+...+ .+..-++.++--.....+-+-..+.++.+-+- -| ...||++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHHHH
Confidence 456666677777666554 24444444444333322222222222221111 11 13455555555
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 005174 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545 (710)
Q Consensus 468 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 545 (710)
..+-.+.. +......-+..+...|+-+.-.+++.++.+. -++++.....+..||.+.|+..++.+++.++-++ |+
T Consensus 77 ~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 55544332 3334555677777888888888888887653 4677777788888888888888888888887765 54
No 277
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.71 E-value=5.2 Score=35.24 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC----chHHHHHHHHHH
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGC----WDKLAKVRTCMR 642 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~ 642 (710)
+.|..-++.++.++|+...++.+++++|...|. -.+|.+++++..
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 346777888899999999999999999997764 345555555543
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.38 E-value=4.3 Score=35.27 Aligned_cols=116 Identities=13% Similarity=-0.006 Sum_probs=58.9
Q ss_pred HccCChhHHHHhHhhCCCCCCccHHHHH-----HHHHhCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHH--HcccCCc
Q 005174 120 ASFSLYNNACFLVENSNIRYPLPWNLLI-----SLYVRDGFYAEALCVYKQMQSRRIRGDNF-TYPSVLKA--CGEMMDV 191 (710)
Q Consensus 120 ~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~--~~~~~~~ 191 (710)
++.++.++|..-|..+...+--+|-.|. ......|+...|+..|.+.-+....|-.. -...|=.+ +...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 5667778888888777766666655543 34556777788888888776543333322 11111111 1333444
Q ss_pred hHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005174 192 DFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235 (710)
Q Consensus 192 ~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 235 (710)
+......+.+. .+.+.-...-.+|.-+-.+.|++.+|.+.|..+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 33333333333 333333333344444444445555555555444
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=3.3 Score=39.96 Aligned_cols=159 Identities=10% Similarity=0.015 Sum_probs=109.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHH----HHHHHhcCCH
Q 005174 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM----VDLYGRAGLL 565 (710)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 565 (710)
.+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.....++++... ..|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578888888889998875 5667778887888999999999999999988763 56776555443 3344578999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 566 NKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE----NSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 566 ~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
++|++.-++.- +.| |.=.-.++.......|+..++.+...+-...=.+ -...|-..+-.|...+.++.|+++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988873 333 3334445556677778877777655543321111 13446666777778899999999998
Q ss_pred HHHhCCCcCCCC
Q 005174 640 CMRDLGVRKIPG 651 (710)
Q Consensus 640 ~m~~~~~~~~~~ 651 (710)
.=.-..+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654444444444
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.32 E-value=1.9 Score=37.18 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=41.3
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
-..+++.+.++..+.-+.-+.|..++.-..-++++...|+|++|.++++.+.+.+.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 34566777777777777777787777777777778888888888887777665444
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.27 E-value=15 Score=34.05 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=9.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 005174 553 ACMVDLYGRAGLLNKAKEIIT 573 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~ 573 (710)
......|.+..++++|-..+.
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHH
Confidence 333444455555555444443
No 282
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=8.5 Score=37.33 Aligned_cols=174 Identities=14% Similarity=0.059 Sum_probs=117.0
Q ss_pred hcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH----HHHHhhccCcHHH
Q 005174 459 RSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA----VLSACSHSGLVVE 531 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~ 531 (710)
-.|+..+|...++++.+. |..+++--=.+|...|+.+.-...+++.... ..||...|.. +.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 468888888888888753 7888998899999999999999999998764 3556543332 2223467899999
Q ss_pred HHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHH
Q 005174 532 GQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPT-------SAMWATLLGACQIHRNTGIGEWA 603 (710)
Q Consensus 532 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~ 603 (710)
|++.-++..+ +.|. .-.-.++...+-..|+..++.++..+-...-+ -.-|.. .-.+...+.++.|.++
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHH
Confidence 9999888764 4554 44556788888899999999999988742111 111221 2223445788888888
Q ss_pred HHH--HHhhCCCCCch---HHHHHHHHHhcCCchHHHHH
Q 005174 604 AEK--LLETRPENSGY---YVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 604 ~~~--~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~ 637 (710)
++. +.+++.+|+.. |..+-.+..+...|.+-.++
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~l 308 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKL 308 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhh
Confidence 864 34566666533 33344445555555554443
No 283
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.95 E-value=17 Score=34.14 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=83.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC--CCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQI--KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 562 (710)
+..-.+.|++++|.+.|+.+..... +-...+...++.++.+.+++++|...+++....++-.|+.. |...+.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 3445677888888888888886421 11345667777788888899999999888888777777742 33344444411
Q ss_pred -------CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 005174 563 -------GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635 (710)
Q Consensus 563 -------g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 635 (710)
.+...+.+-|..+ -....+--|.+-+..+-.++..++-.-+++=..+++-|.+-|.|-.|.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f------------~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAF------------KELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccCCccccCHHHHHHHHHHH------------HHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 0111111111111 111111111111222222222222112445567888999999999999
Q ss_pred HHHHHHHhC
Q 005174 636 KVRTCMRDL 644 (710)
Q Consensus 636 ~~~~~m~~~ 644 (710)
.-++.|.+.
T Consensus 188 nR~~~v~e~ 196 (254)
T COG4105 188 NRFEEVLEN 196 (254)
T ss_pred HHHHHHHhc
Confidence 988888764
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.94 E-value=20 Score=34.96 Aligned_cols=18 Identities=17% Similarity=-0.217 Sum_probs=11.4
Q ss_pred HHhcCChHHHHHHHHHHH
Q 005174 591 CQIHRNTGIGEWAAEKLL 608 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~ 608 (710)
+.+.++++.|.+.++..+
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456667777776666544
No 285
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.92 E-value=2.2 Score=41.14 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=32.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHH
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERM 539 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 539 (710)
+-|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|+.-....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 456666777777777766554 345 6667766666777766666555544443
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.63 E-value=28 Score=36.14 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=26.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHhhccCcHHHHHHHHHHH
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKNQIK-PDHVTMVAVLSACSHSGLVVEGQKQFERM 539 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 539 (710)
+..+.-+.|+.++|++.|++|.+..-. -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344444555555555555555442111 11223444555555555555555555543
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.55 E-value=2.1 Score=41.01 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=58.7
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHHHHH
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNK-----NQIKPDHVTMVA 518 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 518 (710)
..++..++..+..+|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345777888888888888888888887743 667888899999999998888888887765 577777766665
Q ss_pred HHHH
Q 005174 519 VLSA 522 (710)
Q Consensus 519 ll~a 522 (710)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.54 E-value=9.5 Score=34.18 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCC--CCC----hhH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV--TMVAVLSACSHSGLVVEGQKQFERMTSIYGI--FPQ----LEH 551 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~----~~~ 551 (710)
.+..+...|.+.|+.+.|++.|.++.+....|... .+..+|..+...+++..+.....++...... .++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556666666677777777777766654444432 3455566666666766666666665443111 111 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
|..+. +...+++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23456777777777665
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.41 E-value=26 Score=35.51 Aligned_cols=149 Identities=8% Similarity=-0.094 Sum_probs=75.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP---DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEH 551 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 551 (710)
...+|..++..+.+.|+++.|...+.++...+... ++.....-.......|+-.+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577778888888888888888888877643211 2223333334455667777887777776652 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEI-ITKMPYTPTSAMWATLLGACQIH------RNTGIGEWAAEKLLETRPENSGYYVLIANM 624 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 624 (710)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...++.+.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222222223333 777778888888889988887777777776
Q ss_pred HHhc
Q 005174 625 YAAT 628 (710)
Q Consensus 625 ~~~~ 628 (710)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
No 290
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.40 E-value=0.72 Score=27.77 Aligned_cols=31 Identities=19% Similarity=0.046 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
+|..+...+...|+++.|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666667777777777777777777664
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.36 E-value=2.4 Score=35.89 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=47.4
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
...++.+.++..+.-+.-+.|+.++.-.+-+.++...|+|+||.+++....+.+..
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 34788888888888888899999999899999999999999999998888766553
No 292
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.97 E-value=12 Score=31.75 Aligned_cols=88 Identities=9% Similarity=0.009 Sum_probs=59.3
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhh
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 113 (710)
..+...+-.-.....+.|++++|.+.|+.+...=+...-...+-..++.++-..++++.|...++..++.+......-|.
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 33444444455556788999999999999987644333333466778888888899999999998888886333334455
Q ss_pred HHHHHHHc
Q 005174 114 KLVTFYAS 121 (710)
Q Consensus 114 ~l~~~~~~ 121 (710)
..+.+++.
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 44544443
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.83 E-value=0.98 Score=27.80 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMN 505 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (710)
+|+.|...|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777776643
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.66 E-value=3.2 Score=37.14 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHh
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 103 (710)
-+..+..+..-|.+.|+.++|++.|.+++.....+......+..+++.+...+++..+......+...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999988888777778888999988889988887776666544
No 295
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.64 E-value=17 Score=37.56 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCchHHHHHHHH
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPE--NSGYYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
|...+++.|+.++|.+.++.+++..|. +...+..|+.+|...+++.|+..++.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 444444555555555555555444432 233444555555555555555555444
No 296
>PRK10941 hypothetical protein; Provisional
Probab=88.31 E-value=3.4 Score=39.70 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+.|-.+|.+.++++.|.++.+.++.+.|+++.-+--.|-+|.+.|.+..|..-++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 345667788899999999999999999999998888899999999999999887776654
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.05 E-value=0.69 Score=28.06 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=19.4
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHH
Q 005174 545 IFPQ-LEHFACMVDLYGRAGLLNKAK 569 (710)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~~A~ 569 (710)
+.|+ ...|+.+..+|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4676 777888888888888888775
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.84 E-value=18 Score=31.75 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=14.0
Q ss_pred HHHHhCCCCCCcccHHHHHHHHcccCCc
Q 005174 164 KQMQSRRIRGDNFTYPSVLKACGEMMDV 191 (710)
Q Consensus 164 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 191 (710)
+.+.+.|+.|+...+..+++.+.+.|..
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3334445555555555555555555443
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.51 E-value=13 Score=36.52 Aligned_cols=134 Identities=10% Similarity=0.154 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc--cC----chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhH
Q 005174 392 AEESAFLFREMFRSGVEPNYVTIASILPLCAR--VA----NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465 (710)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (710)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+...+-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 44566777888888887777776654433322 11 23444555555555442211
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCChH--HHHHHHHHhhccCc--HHHHHHHHH
Q 005174 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGE----GRVALKLFEEMNKNQIKPDHV--TMVAVLSACSHSGL--VVEGQKQFE 537 (710)
Q Consensus 466 A~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~ 537 (710)
.++-.++..|+.. ..++ .+.+..+|+.+.+.|+..+.. ..+.++.-+..... +.++.++++
T Consensus 138 ---------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 138 ---------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred ---------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 0122233333322 1122 355677888888877766533 33334433322222 456778888
Q ss_pred HHHHHhCCCCChhHHHHHHH
Q 005174 538 RMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 538 ~~~~~~~~~p~~~~~~~li~ 557 (710)
.+.+. |+++...+|..+.-
T Consensus 207 ~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 207 ALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHc-CCccccccccHHHH
Confidence 88776 88888777765543
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.29 E-value=5.7 Score=38.12 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=66.9
Q ss_pred hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh-----hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcee
Q 005174 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDA-----VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276 (710)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 276 (710)
.|.+....+...++..-....+++++...+-++.. |+. .+-.++++-+ -.-+.++++.++..=.+.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 44555555556666666656777777777766632 211 0111222222 2335668888888878888888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005174 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQE 305 (710)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (710)
+++.+|+.+.+.+++.+|..+.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776554
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.84 E-value=3.7 Score=27.98 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHHcCc
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~ 693 (710)
....++-++.+.|++++|.+..+.+.+ .+|+......+...+.+.|++.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 345678889999999999999888774 567777777777778888888774
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.46 E-value=28 Score=35.27 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE----NSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
....+|..+...++++|+++.|..++..+...++. .+.....-+..+...|+-.+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35568889999999999999999999999886532 467778889999999999999998887765
No 303
>PRK09687 putative lyase; Provisional
Probab=85.84 E-value=36 Score=33.17 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh----HHHHHHHHHH
Q 005174 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA----EESAFLFREM 402 (710)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m 402 (710)
..+....+..+...|..+....+..-...+|...-..-+.++.+.|+. .++...+..+
T Consensus 37 ~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 37 SLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 333334444444444332222222222333444444444445555542 3445555544
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.54 E-value=1.3 Score=24.84 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=19.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
.....++.++...|++++|.+++.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788999999999999988754
No 305
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=31 Score=32.12 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=84.8
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChH---HHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP---DHV---TMVAV 519 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~---t~~~l 519 (710)
-...++.-..+|..+|.++-|-..+++.-+ ...+-++++|+++|++...- +.- +.. .+..+
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHh
Confidence 345567777788888888877766665321 22345677777777775542 111 111 23333
Q ss_pred HHHhhccCcHHHHHHHHHHHHHH---hCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---C---CCCCHHHHHHHHH
Q 005174 520 LSACSHSGLVVEGQKQFERMTSI---YGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM---P---YTPTSAMWATLLG 589 (710)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~---~~p~~~~~~~l~~ 589 (710)
-..+.+...+++|-..+.+-... ..-.|+ -..|-+.|-.|.-..++..|.+.++.- + .+-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 34455666677666555443211 011233 234566677777788999999999884 3 2235677788888
Q ss_pred HHHhcCChHHHHHHH
Q 005174 590 ACQIHRNTGIGEWAA 604 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~ 604 (710)
+|- .||.+....++
T Consensus 237 ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AYD-EGDIEEIKKVL 250 (308)
T ss_pred Hhc-cCCHHHHHHHH
Confidence 874 56666555443
No 306
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.47 E-value=19 Score=38.98 Aligned_cols=184 Identities=16% Similarity=0.197 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH----------HHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCC
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV----------TIASILPLCARVANLQHGKEFHCYILR-RAMFNE 445 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 445 (710)
.+-..++-.|....+++..+++.+.+... ||.. .|.-.++---+-|+-++|..+.-.+++ .|.+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556677788888888888888888763 4332 233333333455677777766555544 443444
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH---HHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV---TMVAVLSA 522 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a 522 (710)
++||-||++ |+.|- +-+.|...+..+.|.++|++.-+ +.|+.. .+..|+.+
T Consensus 279 ---------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 356777764 22221 12334555667788888988776 567654 34444443
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
-.+ .++...++ .. +--.|-..++|.|.+++-.++|+-. ..+.+-...+|+.++.+
T Consensus 333 aG~--~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 322 12222211 11 1112445678899888887777653 23344455688888999
Q ss_pred HHHHHHhhCCCC
Q 005174 603 AAEKLLETRPEN 614 (710)
Q Consensus 603 ~~~~~~~~~p~~ 614 (710)
+.+.+.+++|..
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 999999998865
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.23 E-value=1.9 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666655
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.08 E-value=1.1 Score=26.82 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=24.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
..|..++.+|...|++++|.+.+++....
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999887653
No 309
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.87 E-value=13 Score=28.96 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005174 191 VDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270 (710)
Q Consensus 191 ~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 270 (710)
.++|..|-+.+.........+--.-+..+.+.|++++|..+.+.++.||...|-+|-. .+.|..+.+...+.+|..+|
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4566666666652222233333344455677888888888888888888888877654 35666666666666666554
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.84 E-value=9.1 Score=36.81 Aligned_cols=96 Identities=11% Similarity=0.131 Sum_probs=69.4
Q ss_pred CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 005174 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513 (710)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 513 (710)
.+....+...++..-....+++++...+-++... ...+|-.++ ..-++++++.++..=+.-|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccch
Confidence 3444445555666555667788888877776632 233333333 234677999999888889999999
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 542 (710)
.++..+++.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999998887777654
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.94 E-value=24 Score=30.16 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=48.0
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh-cCC
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTP-TSAMWATLLGACQI-HRN 596 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~~-~g~ 596 (710)
...++.+++..+++.|.- +.|+ ...-..-...+.+.|++++|+.+|++....+ ....-..|+..|.. .||
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 347889999999998874 6777 4444445666788999999999999986433 43444455555543 344
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.18 E-value=45 Score=32.82 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHH
Q 005174 157 AEALCVYKQMQSRRIRGDNFTYPSVL 182 (710)
Q Consensus 157 ~~A~~l~~~m~~~g~~p~~~t~~~ll 182 (710)
++.+.+++.|.+.|..-+.++|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~ 104 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAAL 104 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHH
Confidence 45566788888888887777765543
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.10 E-value=42 Score=31.66 Aligned_cols=232 Identities=17% Similarity=0.197 Sum_probs=136.0
Q ss_pred cCCHHHHHHHHHhcCC----CC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCcHHHHHHHHHHHhccC
Q 005174 358 CKDLRHAYILFKMTAE----KS---IITWNSMLSGYTHLDCAEESAFLFREMFRS---GV--EPNYVTIASILPLCARVA 425 (710)
Q Consensus 358 ~g~~~~A~~~~~~~~~----~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~ 425 (710)
..+.++|..-|+.+.+ +. --+.-.+|..+.+.+++++....+++|..- .+ .-+..+.+++++..+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456666666665543 11 223445677778888888888777777531 11 234456777777766666
Q ss_pred chHHHHHHHHHHHHh----CCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---------------ChhHHHHHHH
Q 005174 426 NLQHGKEFHCYILRR----AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---------------DEVTYTSLIA 486 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~ 486 (710)
+.+.-..+++.-++. ..-..-..+-+.|...|...|.+.+-.+++.++.+. -...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666555555443321 101222334456777787888888877777766421 1236777788
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHhh-----ccCcHHHHHHHHHHHHHHhCC--CCCh---hHHHHH
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACS-----HSGLVVEGQKQFERMTSIYGI--FPQL---EHFACM 555 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~l 555 (710)
.|...++-.+...+|++...-. --|.+ ....+|+-|. +.|.+++|..-|-++.+.|.- .|.. --|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888888766522 23333 4445666663 567888877555454443322 2331 235667
Q ss_pred HHHHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005174 556 VDLYGRAGL----LNKAKEIITKMPYTPTSAMWATLLGACQIH 594 (710)
Q Consensus 556 i~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~ 594 (710)
.+++.+.|- -++|. -....|.......|+.+|..+
T Consensus 279 ANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc
Confidence 778877761 12221 012346677778888888643
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.35 E-value=11 Score=29.66 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
+..+-++.+....+-|++....+.+.||.+.+++..|.++++.++.+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHH
Confidence 455666667777788999999999999999999999999999998763 333447776664
No 315
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.26 E-value=17 Score=30.31 Aligned_cols=69 Identities=14% Similarity=0.001 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHH---HHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 546 FPQLEHFACMVDLYGRAGLLNK---AKEIITKMP--YTP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~--~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.++..+-..+..++.+..+.++ -+.++++.- ..| +.....-|.-+|.+.|+++++.+.++.+++++|+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 5666666677777777665443 455555541 223 22333345556777888888888888888888765
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.19 E-value=86 Score=34.62 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=61.9
Q ss_pred HHHHHccCChhHHHHhHhhCCCCCC-----ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCC
Q 005174 116 VTFYASFSLYNNACFLVENSNIRYP-----LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 190 (710)
++.+.+.+.+++|+++.+.....-. ..+...|..+.-.|++++|-.+.-.|... +..-|..-+.-+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 5667778888999888877553222 24788888888999999998888888653 44455555555544443
Q ss_pred chHHHHHHHHHHhcCC-ChHHHHHHHHHHHHh
Q 005174 191 VDFGRVVHSCIDACHE-WSLFVHNALVSMYGK 221 (710)
Q Consensus 191 ~~~a~~~~~~~~~g~~-~~~~~~~~li~~~~~ 221 (710)
.. .+...+..|.+ .+..+|..++..+..
T Consensus 439 l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 32 22222222222 456667666666655
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.59 E-value=13 Score=28.83 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
+.-++.+-++.+....+-|++....+.+.||.+.+++..|.++++.++.+-| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666667777777889999999999999999999999999998876522 24445665553
No 318
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.52 E-value=55 Score=31.93 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHhhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHH
Q 005174 211 VHNALVSMYGKFGQVD---VARRLFDKMLE--RD-AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284 (710)
Q Consensus 211 ~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 284 (710)
+...|+.+|...+..+ +|..+++.+.. ++ ...+-.-+..+.+.++.+++.+.+.+|... +.-....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHH
Confidence 4455666666655543 33444444411 22 334444455555566677777777777654 22233445544444
Q ss_pred HHh--cCChHHHHHHHHHHHhCCCCCC
Q 005174 285 CLR--TGNFKGVLELLSRMRTQETYLD 309 (710)
Q Consensus 285 ~~~--~g~~~~a~~~~~~m~~~~~~p~ 309 (710)
+.. ......+...+..+....+.|.
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 421 1223445555555544433333
No 319
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.35 E-value=17 Score=32.13 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=22.7
Q ss_pred hhccCcHHHHHHHHHHHHHHh----CCCCC-hhHHHHHHHHHHhcC
Q 005174 523 CSHSGLVVEGQKQFERMTSIY----GIFPQ-LEHFACMVDLYGRAG 563 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g 563 (710)
+++.....++..+++...+++ .+.|+ ...+.++..+|...+
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 333334344444444443332 46888 678888888887654
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.34 E-value=2.7 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=25.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
.+.-++.+.|+++.|.+..+.+++++|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556789999999999999999999998744
No 321
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.96 E-value=1.7e+02 Score=37.16 Aligned_cols=64 Identities=13% Similarity=-0.006 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 581 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..+|-.....++..|.++.|..++-.+.+.. -++.+.-.+..+...|+-..|+.+++...+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 5689899999999999999988877777666 478999999999999999999999998876544
No 322
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.68 E-value=8.2 Score=37.11 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
.++..++..+..+|+.+.+.+.+++.- .. -|...|..++.+|.+.|+...|+.+++.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 356677777777777777777777662 22 36777777777777777777777777776654
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.59 E-value=43 Score=30.12 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHH--HHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHH-----HHHHHHHhcCCHHHH
Q 005174 496 VALKLFEEMNKNQIKPDHVTMVA--VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-----CMVDLYGRAGLLNKA 568 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A 568 (710)
+.....+++....-+..-.++.+ +-..+...+++++|...++..... |..+.+. .|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555566654321211112222 334567788999999888876542 3333333 455677889999999
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 569 KEIITKMPYTPTSAM--WATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 569 ~~~~~~m~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
+..++.... ++-.. ...-..++...|+.+.|+..+++.++.+++.
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 999998652 22222 2233366888999999999999999887543
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.58 E-value=1.6 Score=37.63 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=61.9
Q ss_pred HHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchH
Q 005174 79 HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158 (710)
Q Consensus 79 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 158 (710)
.++..+...+.+.....+++.+++.+...+....+.++..|++.++.+...++++.... .....++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666666777777778888888766566678888999999998888888888874333 445667777777788888
Q ss_pred HHHHHHHHH
Q 005174 159 ALCVYKQMQ 167 (710)
Q Consensus 159 A~~l~~~m~ 167 (710)
|.-+|.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 877777654
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.45 E-value=3.2 Score=24.83 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=25.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988765
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.28 E-value=3 Score=26.33 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++..|+.+|...|++++|.+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4578899999999999999999887754
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.28 E-value=12 Score=29.47 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=34.4
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 574 ~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
.+...|++.+..+.+.||++.+|+..|.+.++-+.....+....|-.+.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3456789999999999999999999999999988876655544665543
No 328
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.26 E-value=26 Score=27.43 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005174 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406 (710)
Q Consensus 327 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 406 (710)
++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+....||...|-++... +.|..+++..-+..|..+|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 4444444444433311 222222334556788999999999999988999999887654 6677777777777787776
Q ss_pred CCCcHHHHH
Q 005174 407 VEPNYVTIA 415 (710)
Q Consensus 407 ~~p~~~t~~ 415 (710)
.|...+|.
T Consensus 99 -~p~lq~Fa 106 (115)
T TIGR02508 99 -DPRLQTFV 106 (115)
T ss_pred -CHHHHHHH
Confidence 55544443
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.24 E-value=1e+02 Score=34.18 Aligned_cols=218 Identities=18% Similarity=0.132 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCch-------HHHHHHHHHH-hcCCChHH--
Q 005174 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD-------FGRVVHSCID-ACHEWSLF-- 210 (710)
Q Consensus 141 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-------~a~~~~~~~~-~g~~~~~~-- 210 (710)
..-=++|-.|.|.|++++|.++..+.... .......|...+..+....+-. ....-+.... .....|++
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 33446778889999999999998666543 5566678888899887653322 2333333333 22222443
Q ss_pred -HHHHHHHHHHhcCCHHHHH-HHHhhcCCCChhHHHHHHHHHHhCCC---------hHHHHHHHHHHHHcCCCCceehHH
Q 005174 211 -VHNALVSMYGKFGQVDVAR-RLFDKMLERDAVSWNTMISAYASKGL---------WKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 211 -~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
+|..+ ++|.-...-. .++..+ +-..|-.|.-.-..... .++..+.+.+.-+.-..+ ....-
T Consensus 191 AvY~il----g~cD~~~~~~~~V~~ti---ED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~ 262 (613)
T PF04097_consen 191 AVYKIL----GRCDLSRRHLPEVARTI---EDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPL 262 (613)
T ss_dssp HHHHHH----HT--CCC-S-TTC--SH---HHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------
T ss_pred HHHHHH----hcCCccccchHHHhCcH---HHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhHH
Confidence 33333 2222111000 000000 11223333221111110 112222222221111222 11222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHh-
Q 005174 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY-GEYENVRNALITMYSR- 357 (710)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~~~~- 357 (710)
.....+.-.|+++.|++++-+ ..+...|.+.+.+.+..+.-..-..... ..++.... .+...-+..||..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 344566778999999999887 3445566777777776655433222211 11111110 1111235566666665
Q ss_pred --cCCHHHHHHHHHhcC
Q 005174 358 --CKDLRHAYILFKMTA 372 (710)
Q Consensus 358 --~g~~~~A~~~~~~~~ 372 (710)
..+..+|...|-.+.
T Consensus 338 F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 338 FEITDPREALQYLYLIC 354 (613)
T ss_dssp TTTT-HHHHHHHHHGGG
T ss_pred HhccCHHHHHHHHHHHH
Confidence 345666666665443
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.15 E-value=1e+02 Score=34.19 Aligned_cols=172 Identities=13% Similarity=-0.032 Sum_probs=76.7
Q ss_pred CCCCCcchhhhhHHHHHHHHH-hCCCchHHHHHHHHhHHhCCCCCch---hhHHHHHHHHhcccCchHhHHHHHHHHHHh
Q 005174 28 QPINNEHIMRINLLETLKDFA-GRGNLSKAFEAFTRIRITAASHDVV---LDSFAHIIFCCGKVKALAQGKQLHACAIAL 103 (710)
Q Consensus 28 ~~~~~~~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 103 (710)
+....|.....+...+.+.|. .+.+++.|...+++.....-+++-. ..+-..+++.+.+.+... |....+..++.
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~ 128 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED 128 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence 333334444455555555555 6777778877777654433222211 001122334444433333 66666665554
Q ss_pred CCC----CCCchhhHH-HHHHHccCChhHHHHhHhhCC-----CCCC--ccHHHHHHHH--HhCCCchHHHHHHHHHHhC
Q 005174 104 GLE----KNPVLVPKL-VTFYASFSLYNNACFLVENSN-----IRYP--LPWNLLISLY--VRDGFYAEALCVYKQMQSR 169 (710)
Q Consensus 104 ~~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~-----~~~~--~~~~~li~~~--~~~~~~~~A~~l~~~m~~~ 169 (710)
--. +-...+..+ +..+...++...|...++.+. +.|. ..+-.++.+. .+.+..+++++..+++...
T Consensus 129 ~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 129 SETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred HhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 211 111222222 222223367777777766542 1122 1222222222 2345556666666655322
Q ss_pred CC---------CCCcccHHHHHHHH--cccCCchHHHHHHHH
Q 005174 170 RI---------RGDNFTYPSVLKAC--GEMMDVDFGRVVHSC 200 (710)
Q Consensus 170 g~---------~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~ 200 (710)
.. .|-..+|..+++.+ ...|+++.++.....
T Consensus 209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 12333555555554 334554455444433
No 331
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.68 E-value=12 Score=28.99 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=34.7
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 574 ~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
.+...|++.+..+-+.||++-+|+..|.+.++-+......+...|-.+
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 345678888888888999999999888888887775544344445443
No 332
>PRK09687 putative lyase; Provisional
Probab=79.63 E-value=64 Score=31.50 Aligned_cols=73 Identities=8% Similarity=0.036 Sum_probs=35.3
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 523 (710)
+..+....+.++.+.|+......+.+.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 44445555555555555332233333333323 123455666666664 566666666542 33555444444444
No 333
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.57 E-value=1.1e+02 Score=34.06 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHHH
Q 005174 620 LIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
.+.+.|...|+.++|.+......
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 45556778899999888776543
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.46 E-value=4.8 Score=25.35 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
No 335
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.45 E-value=1.6 Score=37.58 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=24.9
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHh
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 471 (710)
..+.+.+.......++..+...+ ...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444444444455554443 33445555555666665555555554444
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.00 E-value=2.9 Score=24.66 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+..++.+|.+.|++++|.+.++.+...
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667899999999999999999888753
No 337
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.30 E-value=7.1 Score=28.98 Aligned_cols=47 Identities=4% Similarity=0.028 Sum_probs=27.7
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEI 571 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 571 (710)
+...-++|...|....++..-.|+ ..++.+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666665322233 44566666677777766666554
No 338
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.80 E-value=2.2 Score=41.37 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005174 561 RAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 561 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
..|.+++|++.|... +..| ....+..-.+++.+.+....|++-+..+++++|+....|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356677777777765 2333 34444445566777777788888899999999999999999999999999999999988
Q ss_pred HHHHhCCCc
Q 005174 639 TCMRDLGVR 647 (710)
Q Consensus 639 ~~m~~~~~~ 647 (710)
.....++..
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 877766663
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.70 E-value=49 Score=35.17 Aligned_cols=148 Identities=16% Similarity=0.037 Sum_probs=93.8
Q ss_pred hcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFE 537 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 537 (710)
-.|+++.|..++-.+.++ .-+.++.-+.+.|..++|+++ .+|.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 456777777766666532 334556666777777777664 33332 2222 246788888887766
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 538 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
+.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.+...+-...|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 542 34558899999999999999999888764 25566666667777554444444444433332
Q ss_pred HHHHHHHHHhcCCchHHHHHHHH
Q 005174 618 YVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
.--.+|...|+.++..+++..
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 333456778888888777543
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.43 E-value=31 Score=36.53 Aligned_cols=148 Identities=15% Similarity=0.050 Sum_probs=87.7
Q ss_pred ccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHHcccCCchHHHHHHH
Q 005174 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF-TYPSVLKACGEMMDVDFGRVVHS 199 (710)
Q Consensus 121 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~ 199 (710)
-.|+++.|..++..+++ ..-+.++.-+-+.|..++|+++- +|.. -| ....+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rF----elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS---------TDPDQRF----ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC---------CChhhhh----hhhhhcCcHHHHHHHHH
Confidence 34677777766666552 23455666666777777776542 2222 12 22234566666666554
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHH
Q 005174 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 200 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
.. .+..-|..|.++....|++..|.+.|.... -|..|+-.+...|+.+....+-....+.|. .|
T Consensus 662 e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N 725 (794)
T KOG0276|consen 662 EA-----NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NN 725 (794)
T ss_pred hh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cc
Confidence 43 355667777777777788887777776543 255666666666766655555555555443 23
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 005174 280 TIAGGCLRTGNFKGVLELLSR 300 (710)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~ 300 (710)
.-.-+|...|+++++++++.+
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 334456667777777777654
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.42 E-value=6 Score=22.09 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEIIT 573 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~ 573 (710)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455666677777777766654
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.33 E-value=6.8 Score=23.00 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=20.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.+..++...|+.+.|...++.+++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455666777777788887777777775
No 343
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.08 E-value=71 Score=34.88 Aligned_cols=150 Identities=11% Similarity=0.019 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHH-HHHH-HhccCchHHHHHHHHHHHHh---CCCCCchHHHhHHhhhhhhcC-----
Q 005174 392 AEESAFLFREMFRSGVEPNYVTIAS-ILPL-CARVANLQHGKEFHCYILRR---AMFNEHLLLWNSLVEMYARSG----- 461 (710)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g----- 461 (710)
...|...++.....|..-....... ...+ .....+.+.|..++..+.+. ....-.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 5678888888777762222211111 1112 44566788888888887661 001112334555556665543
Q ss_pred ChhHHHHHHhhcCCC-ChhHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh--ccCcHHHHHHH
Q 005174 462 KVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQ---GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS--HSGLVVEGQKQ 535 (710)
Q Consensus 462 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~ 535 (710)
+.+.|..++...... ++..--.+...|... .+...|.++|....+.|.. +...+.+++..+. ...+...|..+
T Consensus 308 d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 445566666654432 222222222222222 3456777777777766633 2222222222221 23356667777
Q ss_pred HHHHHHH
Q 005174 536 FERMTSI 542 (710)
Q Consensus 536 ~~~~~~~ 542 (710)
+++..++
T Consensus 387 ~k~aA~~ 393 (552)
T KOG1550|consen 387 YKKAAEK 393 (552)
T ss_pred HHHHHHc
Confidence 7766655
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.88 E-value=19 Score=32.59 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=47.3
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCchH
Q 005174 560 GRAGLLNKAKEIITKMPYTP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE----NSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 633 (710)
.+.|+ ++|.+.|-.+...| +....-.-+..|....|.+++...+-+++++.+. |+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 55666666664233 3333333444455567777888888887776432 47788888888888888887
Q ss_pred HH
Q 005174 634 LA 635 (710)
Q Consensus 634 A~ 635 (710)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.26 E-value=33 Score=31.08 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHHH
Q 005174 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG--IFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 495 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
+.|.+.|-++...+.--++.....|.. |....+.+++.+++-+..+.+. -.+|++.+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455556656655543333333333333 3334566666666666555331 134455666666666666666555
No 346
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.19 E-value=8.1 Score=21.85 Aligned_cols=27 Identities=26% Similarity=0.024 Sum_probs=12.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
.+...+...|+++.|...++..+++.|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 333444444444444444444444443
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.27 E-value=30 Score=35.49 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=63.6
Q ss_pred cCChHHHH-HHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 005174 491 QGEGRVAL-KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569 (710)
Q Consensus 491 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 569 (710)
.|+...|- +++.-+....-.|+.....+.| +.+.|+++.+.+.+...... +.....+..+++...-+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34444433 3444444444455555444444 45667777776666655432 3334556666777777777777777
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 570 EIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 570 ~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
..-..|- .-.+..+...-.......|-++++...+++++.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666552 1112222222223344455666666666666666654
No 348
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.85 E-value=7.1 Score=39.99 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=54.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 005174 557 DLYGRAGLLNKAKEIITKM-PYTPTSAMWATLL-GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 634 (710)
+-+.+.+.++.|+.++.+. ...||...|.+.= .++.+.+++..|..-+.++++++|.....|+.-+.++.+.|++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3344555666666666555 3455544443332 5566677777777777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 005174 635 AKVRTCMR 642 (710)
Q Consensus 635 ~~~~~~m~ 642 (710)
...++...
T Consensus 92 ~~~l~~~~ 99 (476)
T KOG0376|consen 92 LLDLEKVK 99 (476)
T ss_pred HHHHHHhh
Confidence 77655543
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.48 E-value=64 Score=32.84 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=50.4
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhhCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 005174 580 TSAMWATL---LGACQIHRNTGIGEWAAEKLLETRPE-NSGYYVLIANMYA-ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 643 (710)
|...|.++ +....+.|-+..|.+..+.++.++|. ||-.-..+++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34444444 45678899999999999999999998 8888888999888 78888877777665443
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.31 E-value=81 Score=29.02 Aligned_cols=61 Identities=8% Similarity=-0.048 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 554 CMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 554 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.-+..+.+.+.+++|+...+.- +.+| |...-..|+.-++..|+.++|..-++.+-++.|++
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344555566666666554432 3334 33344445555666666666666666666666653
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.26 E-value=73 Score=28.10 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=27.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 542 (710)
..+|-+++.....+-+...|-..-...-..|.-+-.+.|++..|.++|..+..+
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 345555555555544443322222223334444455666666666666666554
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.23 E-value=1.6e+02 Score=32.13 Aligned_cols=211 Identities=9% Similarity=0.055 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh-cCChhHHHHHHhhcCCC-ChhHHHHHHHHHH----hcCChHHHHH
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-SGKVPEAKSVFDLMSRR-DEVTYTSLIAGYG----IQGEGRVALK 499 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~ 499 (710)
+.+.|..++......| .|+....-..+-.... -.+...|.+.|....+. .+.++-.+..+|. ...+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 3455566666655555 2222222111111111 23456666666665543 2332222222222 2346777888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH---H--h--cCCHHHHHHHH
Q 005174 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY---G--R--AGLLNKAKEII 572 (710)
Q Consensus 500 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~--~--~g~~~~A~~~~ 572 (710)
++.+..+.| .|...--...+..+.. +.++.+.-.+..+... |.+-....-..+.+.. . + ..+.+.+...+
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLY 462 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHH
Confidence 888877776 4443333333444444 5666655555555443 3222111111111111 1 1 22455666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-C--CchHHHHHHHHHHhC
Q 005174 573 TKMPYTPTSAMWATLLGACQI----HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT-G--CWDKLAKVRTCMRDL 644 (710)
Q Consensus 573 ~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~~ 644 (710)
.+....-+......|...|.. ..+.+.+...+.++-+.. +.....++.++..- | ++..|.++++...+.
T Consensus 463 ~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 463 SRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 666544455555555444332 235566666666665554 55566666666522 1 267777777766543
No 353
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=70.56 E-value=60 Score=30.14 Aligned_cols=142 Identities=11% Similarity=0.052 Sum_probs=87.5
Q ss_pred cchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchh
Q 005174 33 EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112 (710)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (710)
.....+.+...+..|...-+|.-|--.+++..+ |-.+ -. .+.-|.+..+..--.++.+-...-++..+....
T Consensus 126 T~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiE----PIQS---RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgL 197 (333)
T KOG0991|consen 126 TAGAQQALRRTMEIYSNTTRFALACNQSEKIIE----PIQS---RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGL 197 (333)
T ss_pred hhHHHHHHHHHHHHHcccchhhhhhcchhhhhh----hHHh---hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchH
Confidence 344556777888888888888777766666543 3332 22 233355665655555555555555565555555
Q ss_pred hHHHHHHHccCChhHHHHhHhh----------------CCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc
Q 005174 113 PKLVTFYASFSLYNNACFLVEN----------------SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176 (710)
Q Consensus 113 ~~l~~~~~~~g~~~~A~~~~~~----------------~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 176 (710)
.+++ +...|+..+|...++. ...|.+..-..++..|. .+++++|.+++.++-+.|..|..
T Consensus 198 eaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D- 273 (333)
T KOG0991|consen 198 EAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED- 273 (333)
T ss_pred HHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-
Confidence 5444 4567888888776654 23455555666666554 46788899999988888887653
Q ss_pred cHHHHHHHHc
Q 005174 177 TYPSVLKACG 186 (710)
Q Consensus 177 t~~~ll~~~~ 186 (710)
..+.+++++-
T Consensus 274 ii~~~FRv~K 283 (333)
T KOG0991|consen 274 IITTLFRVVK 283 (333)
T ss_pred HHHHHHHHHH
Confidence 3344445443
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.99 E-value=1.1e+02 Score=29.59 Aligned_cols=58 Identities=10% Similarity=-0.114 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 585 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+.....|...|.+..|.+..++++.++|-+...|..|.++|+..|+--+|.+-+.++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444678899999999999999999999999999999999999999888887777664
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.82 E-value=52 Score=33.85 Aligned_cols=140 Identities=16% Similarity=0.068 Sum_probs=93.6
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGE 601 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~ 601 (710)
...|++-.|-+-+......+.-.|+.. -.....+...|.++.+...+.... ......+..+++......|+.+.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 455777666555444555444455533 333445678899999999988764 3345567788888888888888888
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeC
Q 005174 602 WAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVD 667 (710)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (710)
...+.++.-+-++++....-+..-...|-+|++.-.|+.....+.....| |+..-.....|-.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~~~ 441 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceeccCc
Confidence 88888877666666655544555567788999999999987666544444 77665555555433
No 356
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.56 E-value=13 Score=34.46 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=24.8
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
.+..+.+.+.+-..+++++.|+....+..++..+.....+++|+..+.+.
T Consensus 55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33444444445555555555554444555555555555555555554444
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.46 E-value=2e+02 Score=32.52 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=28.8
Q ss_pred hcCChHHHHHHHHHHHHC----CCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 490 IQGEGRVALKLFEEMNKN----QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
..|++++|.++-+..... -..+....+..+..+..-.|++++|..+.+...+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 446667777666665542 1122333444555555566777777766655543
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.64 E-value=59 Score=27.29 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 528 LVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
++.++..+++.+.+. -.|+ .+...-|.-++.|.|++++++++++..
T Consensus 50 dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 344555555555531 1232 333334455556666666666655544
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.61 E-value=58 Score=31.14 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=60.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKN--QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR- 561 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 561 (710)
|.+++..+++.+++.+.-+--+. .++|...-...+ -|++.+....+.++-...... .-+-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 77888888888888766554432 344444334433 488999999888888887764 222234558888777764
Q ss_pred ----cCCHHHHHHHHHhC
Q 005174 562 ----AGLLNKAKEIITKM 575 (710)
Q Consensus 562 ----~g~~~~A~~~~~~m 575 (710)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 69999999998544
No 360
>PF13934 ELYS: Nuclear pore complex assembly
Probab=68.14 E-value=80 Score=29.62 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=46.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 005174 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569 (710)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 569 (710)
.++++++|++++-.- .+.|+.. .-++.++...|+.+.|..+++.+.. .-.+......++.. ..+|.+.||.
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHH
Confidence 345566666555221 1222211 1355555556667777766665421 11112223333333 4556777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc
Q 005174 570 EIITKMPYTPTSAMWATLLGACQIH 594 (710)
Q Consensus 570 ~~~~~m~~~p~~~~~~~l~~~~~~~ 594 (710)
.+.+..+..-....|..++..|...
T Consensus 161 ~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 161 SFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHhCchhhhHHHHHHHHHHHHHH
Confidence 7776665322234566666655543
No 361
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.00 E-value=61 Score=25.89 Aligned_cols=78 Identities=13% Similarity=0.041 Sum_probs=44.3
Q ss_pred CchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005174 190 DVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268 (710)
Q Consensus 190 ~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (710)
..++|..|.+++. .+. ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 4566667777666 332 344444444556677788888855555556677777766543 466777777777776644
Q ss_pred cC
Q 005174 269 EG 270 (710)
Q Consensus 269 ~g 270 (710)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 362
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.79 E-value=70 Score=28.93 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=16.2
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
+|.+...++.|..-++++++.+|...
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 44555566666666777777766543
No 363
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.72 E-value=1.2e+02 Score=28.37 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=46.3
Q ss_pred ccCcHHHHHHHHHHHHHHhC----CCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHHH---H
Q 005174 525 HSGLVVEGQKQFERMTSIYG----IFPQLEHFACMVDLYGRA-GLLNKAKEIITKMP-----YTPTSAMWATLLGA---C 591 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~-----~~p~~~~~~~l~~~---~ 591 (710)
+.+++.+|...++...+.|. +.--..++-.+...|-.. .++++|+..|+... ...+...-.+++.+ -
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 33455555555554433221 111122333445555443 56666777666652 12233333344433 3
Q ss_pred HhcCChHHHHHHHHHHHhhCCCC
Q 005174 592 QIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
...+++.+|...++++-.-.-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 56678888888888887655444
No 364
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.80 E-value=20 Score=27.74 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
...++..++.+|+|...-..++..+...|++++|.+.+-.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566677777888888888888888888888888887776654
No 365
>PRK10941 hypothetical protein; Provisional
Probab=63.02 E-value=61 Score=31.30 Aligned_cols=66 Identities=8% Similarity=-0.058 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
.+.+-.+|.+.++++.|+++.+.+- ..| |..-|.--.-.|.+.|....|..-++.+++..|+++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 4456677788888888888888772 334 55667766677888888888888888998888887654
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.84 E-value=2e+02 Score=29.99 Aligned_cols=116 Identities=9% Similarity=-0.122 Sum_probs=57.5
Q ss_pred HhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCc--hhhHHHHHHHccCCh
Q 005174 48 AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV--LVPKLVTFYASFSLY 125 (710)
Q Consensus 48 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 125 (710)
+..|+.+- ++.+.+.|..|+.....-...+..++..|+.+ +.+.+++.|..++.. -..+.+...++.|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 44555544 44444567666543212233344444556653 455566666554432 223445556677888
Q ss_pred hHHHHhHhhCCCCCCc---cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 005174 126 NNACFLVENSNIRYPL---PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175 (710)
Q Consensus 126 ~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~ 175 (710)
+.+..+++.-...+.. .-.+.+...+..|+. ++++.+.+.|..|+.
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~ 130 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDI 130 (413)
T ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCC
Confidence 8887777654321111 112233333445554 344555556666554
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.68 E-value=1.5e+02 Score=28.56 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=79.9
Q ss_pred ccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHH----HHHHHhCCCCCCcccHHHHHHHHcccCCch-HHH
Q 005174 121 SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV----YKQMQSRRIRGDNFTYPSVLKACGEMMDVD-FGR 195 (710)
Q Consensus 121 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 195 (710)
+.+++++|.+++.. =...+.+.|+...|-++ .+...+.++++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45677777777643 24455666666555444 333344566666666566665554333211 122
Q ss_pred HHHHHHH--h----cCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005174 196 VVHSCID--A----CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269 (710)
Q Consensus 196 ~~~~~~~--~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (710)
.+.+.+. . ...-|+.....+...|.+.|++.+|+..|-.-..++...+..++.-+...|...++--++.+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R---- 146 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR---- 146 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH----
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH----
Confidence 2222222 2 23347788889999999999999999887655444444443344444444444433211111
Q ss_pred CCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005174 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304 (710)
Q Consensus 270 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (710)
.+--|.-.++...|...+....+.
T Consensus 147 -----------aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 147 -----------AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----------HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 122355567777777777666543
No 368
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.47 E-value=46 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 615 SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..-|..|+..|...|..++|.+++....+
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 35589999999999999999999998776
No 369
>PF15469 Sec5: Exocyst complex component Sec5
Probab=62.39 E-value=1.2e+02 Score=27.36 Aligned_cols=119 Identities=17% Similarity=0.269 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLY 559 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 559 (710)
+..++..-.+......++.++++..- .+..-.-|.-|.+.|+++.+...|.++...++-.. ....+..+
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v---- 129 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV---- 129 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH----
Confidence 33344444444445555555555432 22233456667778888888888877766532221 12222211
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 560 GRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
+.++..+++... ...|..|.... ...+......+.+++++|++-.+|.++
T Consensus 130 -----~~eve~ii~~~r----~~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 130 -----WSEVEKIIEEFR----EKLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred -----HHHHHHHHHHHH----HHHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 122222222221 11222222211 455556777778888877665555554
No 370
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.72 E-value=3e+02 Score=31.69 Aligned_cols=131 Identities=11% Similarity=0.181 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhh
Q 005174 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457 (710)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (710)
-|..|+.-|...|+.++|++++++....--.-|... .+.-..+.+.+.+.+ .++..+.-...+ +
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~--~~~~~Li~~y~~-w 569 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLG--AENLDLILEYAD-W 569 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhc--ccchhHHHHHhh-h
Confidence 478899999999999999999999876321011110 011111223333332 111111111111 1
Q ss_pred hhcCChhHHHHHHhhcCCCChhHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh
Q 005174 458 ARSGKVPEAKSVFDLMSRRDEVTYT-SLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
.-..+.+...++|..-......+.+ --+-.|......+-++.+++.+....-.++..-.+.++.-|.
T Consensus 570 vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 570 VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 1233455555555441110001110 112345556667777778887776555556666666655553
No 371
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=61.09 E-value=2.2e+02 Score=31.21 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHH
Q 005174 143 WNLLISLYVRDGFYAEALCVYK 164 (710)
Q Consensus 143 ~~~li~~~~~~~~~~~A~~l~~ 164 (710)
|+ .+..++-.|.++.|.+++.
T Consensus 152 W~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 152 WD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HH-HHHHHHHTT-HHHHHHHH-
T ss_pred HH-HHHHHHHcCCHHHHHHHHH
Confidence 54 5666666677777776663
No 372
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=60.91 E-value=1.4e+02 Score=27.55 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh-HHHHHHHH--HHhcCChHHHHHHHHHHHHc
Q 005174 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSII-TWNSMLSG--YTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~a~~~~~~m~~~ 405 (710)
+.++|.|.--+...|+++.|.+.|+...+-|+. -|..+-++ +--.|++.-|.+-|-+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 456777776777777777777777776654431 22222221 22345666665555444433
No 373
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.47 E-value=1.1e+02 Score=28.57 Aligned_cols=83 Identities=11% Similarity=-0.085 Sum_probs=43.5
Q ss_pred hhhhcCChhHHHHHHhhcC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHhhccCcHHH
Q 005174 456 MYARSGKVPEAKSVFDLMS--RRDE-VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM-VAVLSACSHSGLVVE 531 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~ 531 (710)
-|....+++.|...+.+.. .|++ .-|+.-+.++.+..+++.+..=-.+.++ +.||.+-- ..+..+......+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 3445556666666665544 3444 2344556666666666666554444443 45554432 223333445555666
Q ss_pred HHHHHHHHH
Q 005174 532 GQKQFERMT 540 (710)
Q Consensus 532 a~~~~~~~~ 540 (710)
|...+.+..
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 666666553
No 374
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.70 E-value=1.8e+02 Score=28.06 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=35.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHH-------HHHHHHhhccCcHHHHHHHH
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM-------VAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~a~~~~g~~~~a~~~~ 536 (710)
.+-..+.+++++|+..+.+....|+..|..+. ..+..-|...|+...-.+..
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34445678899999999999998888776544 44556666667665544433
No 375
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.45 E-value=1.4e+02 Score=26.97 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005174 215 LVSMYGKFGQVDVARRLFDKMLERDAVS--WNTMISAYASKGLWKEAFQLFVEMQEE 269 (710)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (710)
|.......|.+|+|+.+++....++-.. ...-...+...|+-++|..-|...++.
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3444455566666666665555443222 111223455555556665555555544
No 376
>PRK12798 chemotaxis protein; Reviewed
Probab=58.15 E-value=2.3e+02 Score=29.17 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=103.8
Q ss_pred cCChhHHHHHHhhcCCC----ChhHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHhhccCcHH
Q 005174 460 SGKVPEAKSVFDLMSRR----DEVTYTSLIAGY-GIQGEGRVALKLFEEMNKNQIKPD----HVTMVAVLSACSHSGLVV 530 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 530 (710)
.|+.++|.+.+..+... ....|-.|+.+- ....+..+|+++|++..- .-|- .....--+.-....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58889999998888743 445666666554 445689999999998764 2343 223444444567889999
Q ss_pred HHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 531 EGQKQFERMTSIYGIFPQLEH-FACMVDLYGRAG---LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606 (710)
Q Consensus 531 ~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 606 (710)
++..+-......|...|-... +..++..+.+.+ ..+.-..++..|.-.-....|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988887777777666665332 333444444433 4455566777775333456787888888899999999999999
Q ss_pred HHhhCCC
Q 005174 607 LLETRPE 613 (710)
Q Consensus 607 ~~~~~p~ 613 (710)
++.+...
T Consensus 283 A~~L~~~ 289 (421)
T PRK12798 283 ALKLADP 289 (421)
T ss_pred HHHhccC
Confidence 9998643
No 377
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.38 E-value=55 Score=30.40 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH-------hhC--CC----CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLL-------ETR--PE----NSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+--+.+.|+..|+.+.-...+++++ +-+ |. .......+|.+..+.|+.++|.+.+.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34445566777776554444444443 222 21 2456778999999999999999999888753
No 378
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.06 E-value=1.1e+02 Score=25.60 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 531 EGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 531 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 574 (710)
.+..+|+.|..+ |+--. ...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 778888888776 66666 66778888888888888888888764
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.78 E-value=46 Score=30.33 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=13.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 546 FPQLEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
.|+...|..++..+...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.43 E-value=1e+02 Score=24.67 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005174 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 326 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
.++|..|.+.+...+. ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4555666655555443 223333334456778899999954445556678888877654 4778888888888877766
Q ss_pred CCCCcHHHH
Q 005174 406 GVEPNYVTI 414 (710)
Q Consensus 406 g~~p~~~t~ 414 (710)
| .|....|
T Consensus 99 g-~~~~q~F 106 (116)
T PF09477_consen 99 G-SPELQAF 106 (116)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 6 4444443
No 381
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.10 E-value=2.4e+02 Score=28.79 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=27.9
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHH-hcCCHHHHHHHHHhC
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYG-RAGLLNKAKEIITKM 575 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~m 575 (710)
..+.+.|-+..|.++.+-+.+ +.|+ +.....+|+.|+ ++++++--+++++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 345556666666666665553 3444 333344555554 555665555555543
No 382
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.83 E-value=27 Score=22.69 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=14.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKN 507 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~ 507 (710)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666643
No 383
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.68 E-value=64 Score=31.70 Aligned_cols=91 Identities=13% Similarity=0.038 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMP----YTP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
.+|.-=.+-|.+..++..|...|.+-- ..| +.+.|+.-..+-...||+..+..-+..++.++|.....|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 345555677888999999999998761 233 34556655555566799999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHH
Q 005174 624 MYAATGCWDKLAKVRTC 640 (710)
Q Consensus 624 ~~~~~g~~~~A~~~~~~ 640 (710)
++....++++|......
T Consensus 162 c~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999998888775443
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.48 E-value=2.2e+02 Score=29.24 Aligned_cols=55 Identities=9% Similarity=-0.001 Sum_probs=36.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHhh--ccCcHHHHHHHHHHHHHH
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQIKPDHV--TMVAVLSACS--HSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~ 542 (710)
.+...+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344678888888888888876 555544 3444445543 355677888888876653
No 385
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.33 E-value=18 Score=33.20 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=41.2
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 558 LYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
+..+.|+.+.|.+++.+. ...| ....|-.+...-.+.|+++.|.++++..++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 455667777777777766 2233 55677777777778888888888888888888875
No 386
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=55.14 E-value=2.8e+02 Score=29.25 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=58.1
Q ss_pred HHHHhhcCCCChhHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh--hccCcHHHHHHHHHHHHHHh
Q 005174 467 KSVFDLMSRRDEVTY-TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC--SHSGLVVEGQKQFERMTSIY 543 (710)
Q Consensus 467 ~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~ 543 (710)
...+..+..++..++ +.++.-+-+.|-.++|...|..+... .+|+...|..++.-- ....++..++.+++.|...|
T Consensus 448 i~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 448 ISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 334444445554443 34566666677777777777777764 345555666655422 11223677777888887777
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005174 544 GIFPQLEHFACMVDLYGRAGLLNKAKEII 572 (710)
Q Consensus 544 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 572 (710)
| .|++.|-..+..=...|..+.+-.++
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIY 553 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHH
Confidence 7 44445554444444555555444433
No 387
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.04 E-value=1.1e+02 Score=28.72 Aligned_cols=55 Identities=13% Similarity=-0.097 Sum_probs=46.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..+...|++-++.+....++...|.+..+|+.-+.+.+..=+.++|.+-+....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3445678888889999999999999999999999999888888888887776654
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.95 E-value=2e+02 Score=27.65 Aligned_cols=83 Identities=24% Similarity=0.243 Sum_probs=45.5
Q ss_pred CchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh
Q 005174 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-.+++. |.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HH
Confidence 45677888888999999999998877654433333332233222222222221 2223333443 44
Q ss_pred ccCcHHHHHHHHHHHHHH
Q 005174 525 HSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~ 542 (710)
..+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567788888877776654
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.66 E-value=49 Score=20.38 Aligned_cols=30 Identities=7% Similarity=-0.299 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHhhCCC
Q 005174 584 WATLLGACQIHRNTGIGEWA--AEKLLETRPE 613 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p~ 613 (710)
|-.+.-.+...|+++.|+.. ++.+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34455555666666666666 3355555554
No 390
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.27 E-value=94 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=24.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHh
Q 005174 142 PWNLLISLYVRDGFYAEALCVYKQMQS 168 (710)
Q Consensus 142 ~~~~li~~~~~~~~~~~A~~l~~~m~~ 168 (710)
-|..++.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999999876
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.07 E-value=1.2e+02 Score=29.16 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=46.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh---
Q 005174 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR--- 459 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 459 (710)
|.+++..|++.+++...-+--+.--+.-......-|-.|.+.+....+.++-..-++.. -..+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHHHH
Confidence 67777888888777665554432212222233333444566666666666555555443 22333335555555544
Q ss_pred --cCChhHHHHHH
Q 005174 460 --SGKVPEAKSVF 470 (710)
Q Consensus 460 --~g~~~~A~~~~ 470 (710)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666666654
No 392
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.73 E-value=1.3e+02 Score=29.38 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=80.3
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC--ChhHH--HHHHHHHHhcCChHHHHH
Q 005174 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR--DEVTY--TSLIAGYGIQGEGRVALK 499 (710)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~li~~~~~~g~~~~A~~ 499 (710)
..-+.+|+.+++..++.+ ...|+ --+.+...|.. .+.+.++ |+.+| ..+..+-.+.|+..+|.+
T Consensus 229 a~Ti~~AE~l~k~ALka~-----e~~yr-~sqq~qh~~~~------~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG-----ETIYR-QSQQCQHQSPQ------HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhHHHHHHHHHHHHHHH-----HHHHh-hHHHHhhhccc------hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 344667777887777766 12222 11111112221 2222333 34444 234555567788888888
Q ss_pred HHHHHHHCCCCCChH---HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 500 LFEEMNKNQIKPDHV---TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 500 ~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 574 (710)
.|+.+.+. .|=.. ....++.+|.....+.+...++-+..+. -.|. ...|++- + -++..+-++
T Consensus 297 ~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi--slPkSA~icYTaA---L------LK~RAVa~k 363 (556)
T KOG3807|consen 297 IMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI--SLPKSAAICYTAA---L------LKTRAVSEK 363 (556)
T ss_pred HHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cCcchHHHHHHHH---H------HHHHHHHhh
Confidence 88887653 22211 2345677777666666655555444321 1232 2233321 1 123334444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 575 m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
. .||..+-+.|-.+- ..|.+++.++.+.+|.-|
T Consensus 364 F--spd~asrRGLS~AE------~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 364 F--SPETASRRGLSTAE------INAVEAIHRAVEFNPHVP 396 (556)
T ss_pred c--CchhhhhccccHHH------HHHHHHHHHHhhcCCCCc
Confidence 3 46665554443331 126778888888888753
No 393
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.94 E-value=97 Score=25.63 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005174 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 556 (710)
+..+-++....-.+-|++......+.||.+.+++..|.++|+.++.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34455556666678999999999999999999999999999998875 334344566555
No 394
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.37 E-value=2.8e+02 Score=28.39 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHc---------CCCCc
Q 005174 210 FVHNALVSMYGKFGQVDVARRLFDKMLE------RDAVSWNTMISAYASKGLWKEAFQLFVEMQEE---------GVEVN 274 (710)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~p~ 274 (710)
..+.-+.+.|..+|+++.|.+.+.+... ..+..|-.+|..-.-.|+|........+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3456778889999999999999988532 13345666677777778877776666655443 13333
Q ss_pred eehHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 275 VITWNTIAGGCLRTGNFKGVLELLSRM 301 (710)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (710)
...+..+..... +++..|...|-..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 334444443333 3666666655443
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.08 E-value=37 Score=22.09 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=13.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 005174 382 MLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
+..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=50.96 E-value=32 Score=19.71 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 595 RNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 595 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35566777777777777766666665554
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.12 E-value=69 Score=26.44 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHH
Q 005174 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215 (710)
Q Consensus 161 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~l 215 (710)
+-+.......+-|++......|++|.+.+|+..|..+++.++....+...+|-.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3344455566778888888888888888888888888887773333333344443
No 398
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.85 E-value=4.6e+02 Score=30.26 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhH
Q 005174 40 LLETLKDFAGRGNLSKAFEAFTRIR 64 (710)
Q Consensus 40 ~~~ll~~~~~~~~~~~A~~~~~~m~ 64 (710)
+..-+..+....++++|+.+-+...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~ 334 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILD 334 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccC
Confidence 5555556666666666666655443
No 399
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.76 E-value=77 Score=27.04 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 005174 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 565 ~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 633 (710)
.+.|.++.+-|. .....-.........|++..|.++++.++..+|++...-...+++|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356777777774 222333344556678999999999999999999999998999998887775443
No 400
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=48.66 E-value=2.7e+02 Score=27.13 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=29.4
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCh
Q 005174 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP----YTPTSAMWATLLGACQIHRNT 597 (710)
Q Consensus 541 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l~~~~~~~g~~ 597 (710)
..++-.++..+....++.+++.+++.+-.++++... ..-|...|..+|.....+||.
T Consensus 194 ~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 194 STFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred hccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 333444555555555555555555555555555441 112445555555555555553
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.63 E-value=59 Score=24.32 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHH
Q 005174 42 ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95 (710)
Q Consensus 42 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 95 (710)
.-+.-| ..++.++|+..|+...+.-..+.....++..++.+++..|+++....
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 66777888888888877665555544566677777777777655443
No 402
>PRK09169 hypothetical protein; Validated
Probab=48.30 E-value=7.3e+02 Score=32.09 Aligned_cols=363 Identities=10% Similarity=-0.013 Sum_probs=192.2
Q ss_pred eehHHHHHHHHHhcCChHHHHHHHHHH----Hh---CCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHh-------hc
Q 005174 275 VITWNTIAGGCLRTGNFKGVLELLSRM----RT---QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-------GC 340 (710)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m----~~---~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~-------~~ 340 (710)
......++++++|-.+-+.+...-..+ .. .....|..-+...++++++-.+-+.+...-..+.. ..
T Consensus 246 ~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~ 325 (2316)
T PRK09169 246 AQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLL 325 (2316)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhh
Confidence 344555666666655443332222211 11 01123455566677777776554433322211111 11
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHH----HHHhcC-------CCChhHHHHHHHHHHhcCChHH----HHHHHHHHHHc
Q 005174 341 YGEYENVRNALITMYSRCKDLRHAYI----LFKMTA-------EKSIITWNSMLSGYTHLDCAEE----SAFLFREMFRS 405 (710)
Q Consensus 341 ~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~-------~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~ 405 (710)
...+..-....+++++|..+-+.+.. +-+.+. .-|..-....+.++++-++-+. +..+...+...
T Consensus 326 ~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~ 405 (2316)
T PRK09169 326 QAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARD 405 (2316)
T ss_pred hhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhc
Confidence 12334444556677777766554322 222221 1245556667778887765442 23333333322
Q ss_pred -C--CCCcHHHHHHHHHHHhccCchHHHHHHHHHHHH---hC---CCCCchHHHhHHhhhhhhcCChhH----HHHHHhh
Q 005174 406 -G--VEPNYVTIASILPLCARVANLQHGKEFHCYILR---RA---MFNEHLLLWNSLVEMYARSGKVPE----AKSVFDL 472 (710)
Q Consensus 406 -g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~ 472 (710)
+ -..|..-....+.+|++-+.-+.+.+....+.. .. .-..+..-....+.+++|.+.-+. +..+...
T Consensus 406 ~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~r 485 (2316)
T PRK09169 406 AGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAAR 485 (2316)
T ss_pred hhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1 235667788889999987765544333322211 10 013345666777788888766442 3333433
Q ss_pred cCC-------CChhHHHHHHHHHHhcCChHHHH----HHHHHHHHC---CCCCChHHHHHHHHHhhccCcHHHH----HH
Q 005174 473 MSR-------RDEVTYTSLIAGYGIQGEGRVAL----KLFEEMNKN---QIKPDHVTMVAVLSACSHSGLVVEG----QK 534 (710)
Q Consensus 473 ~~~-------~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a----~~ 534 (710)
+.. -+..-....+.++++-++.+... .+..++... --..|..-+...+.++++-.+.+.+ ..
T Consensus 486 l~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~a 565 (2316)
T PRK09169 486 LAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEA 565 (2316)
T ss_pred HhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 321 25667788889999888765542 233332221 1234566788889999987764332 23
Q ss_pred HHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHH----HHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHH
Q 005174 535 QFERMTSIYGI--FPQLEHFACMVDLYGRAGLLNK----AKEIITKMP------YTPTSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 535 ~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~------~~p~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
+...+..+-+. ..+.......++++.|.+.-.. |..+..... ..-|..-+..+++++.+-.+.+....
T Consensus 566 LA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~ 645 (2316)
T PRK09169 566 LAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQ 645 (2316)
T ss_pred HHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHH
Confidence 33333221111 1234567788889998876432 333444431 22366677888899988887776555
Q ss_pred HHHHHHhh---C-----CCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 603 AAEKLLET---R-----PENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 603 ~~~~~~~~---~-----p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
+...+-+. + --++.....+.+++++-.+-+.+.+.
T Consensus 646 Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~A 688 (2316)
T PRK09169 646 AAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAA 688 (2316)
T ss_pred HHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHH
Confidence 54444321 2 22566777777888877765554443
No 403
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.22 E-value=1.8e+02 Score=24.99 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=21.3
Q ss_pred ehHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 005174 276 ITWNTIAGGCLRTGN-FKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323 (710)
Q Consensus 276 ~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~ 323 (710)
.+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 444444444433333 223344444444444444444455555544443
No 404
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.23 E-value=3.6e+02 Score=28.20 Aligned_cols=47 Identities=9% Similarity=0.275 Sum_probs=32.2
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 005174 379 WNSMLSGYTH---LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425 (710)
Q Consensus 379 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 425 (710)
+..++.++.+ ..+.+.|+..+..|.+.|..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3444555544 4789999999999999998887666555555544443
No 405
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.14 E-value=5.4e+02 Score=30.28 Aligned_cols=139 Identities=8% Similarity=-0.045 Sum_probs=60.9
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 525 (710)
+..+-...++++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 444444444444433211 12233444455555555555555555443321 11122 23344444444445544
Q ss_pred cCcHHH-HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005174 526 SGLVVE-GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRN 596 (710)
Q Consensus 526 ~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~ 596 (710)
.+..+. +...+..+.. .++...-...+.++++.|..+.+...+..+-..+|..+-..-+.++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 443221 2233333322 345556666666666666654443333333223454444445555555544
No 406
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.55 E-value=79 Score=33.62 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=72.6
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITKM-P-YTPTSAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~g~~~~ 599 (710)
.-.|+...|...+.... ...|. ......|.+.+.+.|...+|-.++.+. . ....+.++..+.+++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 44678888888777665 34554 334556778888888888888877654 2 22345667778888888899999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 600 GEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 600 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
|.++++.++.+.|+++..-..|-.+-|
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998877666655544
No 407
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=45.50 E-value=2.4e+02 Score=30.18 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=17.0
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcC
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMS 474 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~ 474 (710)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 345566777777777777777765
No 408
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.38 E-value=2e+02 Score=24.72 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 005174 375 SIITWNSMLSGYTHLDC-AEESAFLFREMFRSGVEPNYVTIASILPLCARV 424 (710)
Q Consensus 375 ~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 424 (710)
+-.+|..++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44567777777755554 334567777777777788888888888877665
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.30 E-value=95 Score=26.70 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 005174 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324 (710)
Q Consensus 262 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~ 324 (710)
+...+++.|++++ .--..++..+.+.++.-.|.++++++.+.+...+..|.-..|..+...|
T Consensus 8 ~~~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4445566677655 3345566777777777888888888888777766666655555555544
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.13 E-value=78 Score=24.64 Aligned_cols=52 Identities=6% Similarity=-0.032 Sum_probs=33.8
Q ss_pred HhcCChHHHHHHHHHHHhhCCCC---------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 592 QIHRNTGIGEWAAEKLLETRPEN---------SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+.||+..|.+.+.+........ ......++.++...|++++|.+.+++...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777766666665442221 12335577788899999999998877653
No 411
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.08 E-value=75 Score=24.22 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHH
Q 005174 94 KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159 (710)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 159 (710)
..+...+++.| +.+..-.-.+-+...+.+.|.++++.++.+++.+|..+..++-..|...-|
T Consensus 19 ~~v~~~L~~~~----Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRG----VFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcC----CCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34566666555 233333333444556788888999998889988899888888887765544
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.55 E-value=86 Score=28.50 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 577 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
..|+..++..++.++...|+.++|++..+++..+-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999999988
No 413
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.15 E-value=2.8e+02 Score=25.77 Aligned_cols=146 Identities=17% Similarity=0.128 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFAC 554 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 554 (710)
|.+.-++.+.+.+...+|+...++-.+. +| |..+-..++.-++-.|++++|..-++-.-. +.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHH
Confidence 3455677788888999999988887765 44 455666677888999999999888776653 4555 344555
Q ss_pred HHHHHHhcCCHHHHH-HHHHhC--CC--CCCHHHHHHHH-HHH--HhcCChHHHHHHHHHHHhhCCCCCchHH--HHHHH
Q 005174 555 MVDLYGRAGLLNKAK-EIITKM--PY--TPTSAMWATLL-GAC--QIHRNTGIGEWAAEKLLETRPENSGYYV--LIANM 624 (710)
Q Consensus 555 li~~~~~~g~~~~A~-~~~~~m--~~--~p~~~~~~~l~-~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~ 624 (710)
+|.+ +.+. ++|.-- |. -.....|-..+ .+. ...|.-+.....-++.++-.|...+.+. +.+++
T Consensus 78 lir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~gg~fawi 150 (273)
T COG4455 78 LIRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHADGGSFAWI 150 (273)
T ss_pred HHHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccCCcchhhh
Confidence 5543 2232 233322 21 11234454444 443 3334555455566677777776554421 33333
Q ss_pred HHhcCCchHHHHH
Q 005174 625 YAATGCWDKLAKV 637 (710)
Q Consensus 625 ~~~~g~~~~A~~~ 637 (710)
--..+|+.-+.++
T Consensus 151 aDsD~RlgpvlEv 163 (273)
T COG4455 151 ADSDDRLGPVLEV 163 (273)
T ss_pred hhcccccCcceEE
Confidence 3344444444443
No 414
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.94 E-value=95 Score=20.59 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=21.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345566666677777777777666666665553
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.50 E-value=28 Score=29.01 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=23.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCceehHHHHHHH
Q 005174 252 SKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284 (710)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 284 (710)
..|.-.+|..+|..|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34566678899999999998887 57777654
No 416
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=42.47 E-value=1.6e+02 Score=28.23 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=39.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
+++...++.+.|.++.+..+.++|+++...---+-+|.+.|...-|.+-+...
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 45667777777888888888888888777777777888888777777765553
No 417
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.57 E-value=52 Score=30.43 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=50.3
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
....+|.+.+.+++.+++++-|+....|..++..-.++|+++.|.+-+.+..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34678999999999999999999999999999999999999999999888776555
No 418
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.18 E-value=1e+02 Score=20.43 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=13.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhHHHHH
Q 005174 287 RTGNFKGVLELLSRMRTQETYLDSVATVIG 316 (710)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~ 316 (710)
+.|-..++..++++|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444445555555555544444444333
No 419
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.14 E-value=6.4e+02 Score=29.89 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=15.8
Q ss_pred HHhhhhhhcCChhHHHHHHhhcC
Q 005174 452 SLVEMYARSGKVPEAKSVFDLMS 474 (710)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~~~ 474 (710)
.+..+|..+|..-+|...|.+..
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHh
Confidence 33445777788888888877654
No 420
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=41.03 E-value=4.1e+02 Score=27.09 Aligned_cols=127 Identities=14% Similarity=0.212 Sum_probs=85.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCC------CHH-HH-HHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------Cch
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKMPYTP------TSA-MW-ATLLGACQIHRNTGIGEWAAEKLLETRPEN-------SGY 617 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m~~~p------~~~-~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~ 617 (710)
..|.+.+-.+|++++|..++.+.+..- ... .| ---++-|...+|+-.|.-..+++....-++ ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 356677788999999999988876210 000 00 112356778888888777777665432222 356
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHH
Q 005174 618 YVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682 (710)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 682 (710)
|..++.+....+.+-++-+.++.+.+.|..+....-|+++-..+-.|.. .-|...+-.+++.
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~---LAp~dneQsdll~ 276 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV---LAPHDNEQSDLLA 276 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe---ecCCCcHHHHHHH
Confidence 8899999999999999999999999888777766668877776666665 4455444444443
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=40.89 E-value=4.7e+02 Score=27.77 Aligned_cols=160 Identities=11% Similarity=0.045 Sum_probs=93.3
Q ss_pred CCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHH
Q 005174 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSL 484 (710)
Q Consensus 408 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 484 (710)
..|.....+++..++..-...-...+-.+++.-| .+-..+..++..|... ..+.-..+|+++.+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 4566667777777777777777777777777654 3455566777777766 44555666664443 244444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC------hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPD------HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 558 (710)
..-|-+ ++.+.+..+|.+.... +-|- ...|.-+... -..+.+.-.++...+..+.|..--...+.-+-+-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 444444 6667777777776654 2221 1133333321 1345666666666666655555445555555566
Q ss_pred HHhcCCHHHHHHHHHhC
Q 005174 559 YGRAGLLNKAKEIITKM 575 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m 575 (710)
|....++++|++++..+
T Consensus 215 Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 215 YSENENWTEAIRILKHI 231 (711)
T ss_pred hccccCHHHHHHHHHHH
Confidence 66667777777777655
No 422
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.74 E-value=1.3e+02 Score=32.51 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCCH------HHHHHHHHhCCCCCCHHHHHHHHHH
Q 005174 518 AVLSACSHSGLVVEGQKQFERMTSIY-GIFPQLEHFACMVDLYGRAGLL------NKAKEIITKMPYTPTSAMWATLLGA 590 (710)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~p~~~~~~~l~~~ 590 (710)
+|+.+|...|++..+.++++...... |-+--...||..++...+.|.+ +.|.+.++......|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 45555555555555555555443211 0001133344444444444433 2344444444444444555444433
No 423
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.56 E-value=1.8e+02 Score=24.20 Aligned_cols=44 Identities=14% Similarity=0.400 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhh
Q 005174 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472 (710)
Q Consensus 429 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (710)
.+.++|..|...|-.......|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666664455566677777777777777777777653
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.26 E-value=1.7e+02 Score=22.48 Aligned_cols=39 Identities=13% Similarity=0.030 Sum_probs=27.8
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHH
Q 005174 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396 (710)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 396 (710)
..|+.+.|+++++.++ +....|...+.++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4477777777777777 77777777777777777655443
No 425
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.08 E-value=2.7e+02 Score=25.21 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=27.3
Q ss_pred hhhhcCChhHHHHHHhhcCCC------ChhHHHHHHH-HHHhcCC--hHHHHHHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRR------DEVTYTSLIA-GYGIQGE--GRVALKLFEEMNK 506 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 506 (710)
.....|++++|..-++++.+. -...|..+.. +++.++. +-+|.-++.-...
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 334556677766666655421 2334555554 5666554 4455555555544
No 426
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.69 E-value=3.6e+02 Score=27.73 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=40.2
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChh--HHHHHHHHHH--hcCCHHHHHHHHHhCC
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLE--HFACMVDLYG--RAGLLNKAKEIITKMP 576 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~ 576 (710)
.+.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345789999999999999875 555544 5666666665 4568889999999874
No 427
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.28 E-value=2.9e+02 Score=24.95 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=28.0
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCC-------------CCCchHHHhHHhhhhhhcCChhHHHHHHh
Q 005174 416 SILPLCARVANLQHGKEFHCYILRRAM-------------FNEHLLLWNSLVEMYARSGKVPEAKSVFD 471 (710)
Q Consensus 416 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 471 (710)
+++-.|.+.-++.+++.+++.+.+..- ..+.-.+.|.-...+.+.|.++.|..++.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344455556666666666666554320 11222344444455555555555555554
No 428
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.02 E-value=1.8e+02 Score=22.37 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=23.2
Q ss_pred hcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHH
Q 005174 459 RSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 497 (710)
..|+.+.|.+++..+. +.+..|..++.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666666 6666666666666666654444
No 429
>PRK11619 lytic murein transglycosylase; Provisional
Probab=38.97 E-value=6e+02 Score=28.45 Aligned_cols=399 Identities=10% Similarity=-0.042 Sum_probs=205.3
Q ss_pred CChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHH
Q 005174 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285 (710)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 285 (710)
+.....-...+..+.+.+++......+.. +..+...-.....+....|+.++|......+-..|-. ....++.++..+
T Consensus 96 P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~ 173 (644)
T PRK11619 96 PPARSLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVW 173 (644)
T ss_pred chHHHHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHH
Confidence 33344445556666778888888874433 2346666667777888889988887777777554432 234555555555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHhcCCHHHH
Q 005174 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY-ENVRNALITMYSRCKDLRHA 364 (710)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 364 (710)
.+.|.... ...+. -+......|+...+..+...+ +++ ......++..+.+- ..+
T Consensus 174 ~~~g~lt~----------------~d~w~-R~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~~p---~~~ 228 (644)
T PRK11619 174 QQSGKQDP----------------LAYLE-RIRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQNDP---NTV 228 (644)
T ss_pred HHcCCCCH----------------HHHHH-HHHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHHCH---HHH
Confidence 54443322 22222 123333456666666665544 122 22334444444333 333
Q ss_pred HHHHHhcCCCChhHHHHHHHHHH--hcCChHHHHHHHHHHHHcC-CCCcHHH--HHHHHHHHhccCchHHHHHHHHHHHH
Q 005174 365 YILFKMTAEKSIITWNSMLSGYT--HLDCAEESAFLFREMFRSG-VEPNYVT--IASILPLCARVANLQHGKEFHCYILR 439 (710)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g-~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (710)
...+.... ++...-...+.++. ...+.+.|..++....... ..+.... ...+.......+....+...+.....
T Consensus 229 ~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~ 307 (644)
T PRK11619 229 ETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM 307 (644)
T ss_pred HHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 33333322 12111111112222 3455688888888775443 3333222 22222222222224555555554333
Q ss_pred hCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 005174 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516 (710)
Q Consensus 440 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 516 (710)
.. .+......-+..-.+.++++.+...+..|... ...-.--+..++...|+.++|..+|++... . .+|
T Consensus 308 ~~---~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~f 378 (644)
T PRK11619 308 RS---QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGF 378 (644)
T ss_pred cc---CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCc
Confidence 22 23344444455555888998888888888632 223334466777778999999999988743 1 234
Q ss_pred HHHHHHhhccCcH-HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005174 517 VAVLSACSHSGLV-VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595 (710)
Q Consensus 517 ~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g 595 (710)
-.++.+- +.|.. .-.......-.....-.| --.-+..+...|+..+|...+..+....+......+.......|
T Consensus 379 YG~LAa~-~Lg~~~~~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 379 YPMVAAQ-RLGEEYPLKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred HHHHHHH-HcCCCCCCCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 4444322 22211 000000000000000011 12235566778999999988877643455555666666667888
Q ss_pred ChHHHHHHHHHHHhhC---CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 596 NTGIGEWAAEKLLETR---PENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..+.+..+.......+ -.-|..|...+..+++.-.++.+.-.--...+.+.
T Consensus 454 ~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f 507 (644)
T PRK11619 454 WWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAW 507 (644)
T ss_pred CHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 8888877765443221 11244566677777766677766533222234544
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.68 E-value=59 Score=31.59 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 520 (710)
.-||..|..-.+.||+++|+.+++|..+.|+.--..+|..-+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346788888899999999999999999888776566665444
No 431
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=38.63 E-value=4.5e+02 Score=26.93 Aligned_cols=26 Identities=8% Similarity=-0.181 Sum_probs=14.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQIKPD 512 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 512 (710)
.+.+.+++..|.++|+++.....+|+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 44455666666666666665544433
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.14 E-value=69 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 005174 554 CMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 554 ~li~~~~~~g~~~~A~~~~~~m 575 (710)
.+|.+|...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455555555555555555443
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.12 E-value=35 Score=28.51 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=23.6
Q ss_pred HhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHh
Q 005174 48 AGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCC 84 (710)
Q Consensus 48 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 84 (710)
..-|.-.+|-.+|++|...|-.|+ .+..|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd----dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD----DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc----cHHHHHHHh
Confidence 445666778888888888887777 457777654
No 434
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.87 E-value=63 Score=31.40 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=13.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 005174 280 TIAGGCLRTGNFKGVLELLSRMRTQETY 307 (710)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~~~~ 307 (710)
..|....+.||+++|+.++++.+..|+.
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4444444444444444444444444433
No 435
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.51 E-value=3.7e+02 Score=25.28 Aligned_cols=121 Identities=12% Similarity=0.188 Sum_probs=73.6
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcH
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 529 (710)
...-+..|.+.-++.-|...++++.+|=.. .+-+--|.+..+..---++.+-....+++-+......++ +...|+.
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 334566777777777777777777765211 112223444444443444444455566666666666665 5677888
Q ss_pred HHHHHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 530 VEGQKQFERMTSIYGI-----------FPQLEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 530 ~~a~~~~~~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
.+|...++.-...+|+ .|.+.....++..+ -.+++++|.+++.+.
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAEL 264 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 8888888776654443 35555555555443 346888888888776
No 436
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.06 E-value=4.3e+02 Score=25.95 Aligned_cols=25 Identities=8% Similarity=-0.087 Sum_probs=17.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHH
Q 005174 342 GEYENVRNALITMYSRCKDLRHAYI 366 (710)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~ 366 (710)
..|+..|..+..+|.-.|+...+.+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 4666777777777777776655543
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.02 E-value=1.6e+02 Score=30.38 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 005174 210 FVHNALVSMYGKFGQVDVARRLFDKMLE-----------RDAVSWNTMISAYASKGLWKEAFQLFVEM 266 (710)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m 266 (710)
++...|++.++-.||+..|+++++.+.- -.+.+|..+.-+|.-.+++.+|.+.|...
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888888888888777721 13445666666677777777777777665
No 438
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.24 E-value=39 Score=37.61 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=53.3
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 005174 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597 (710)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~ 597 (710)
++|..+.+.|-.+-|+.+.+.-..+| .....+|+++.|++.-.+.. |..+|..|......+||.
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~ 688 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNH 688 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcch
Confidence 34445566676666666655433332 23457888888888887764 677888888888888888
Q ss_pred HHHHHHHHHHHhh
Q 005174 598 GIGEWAAEKLLET 610 (710)
Q Consensus 598 ~~a~~~~~~~~~~ 610 (710)
+.++..+++....
T Consensus 689 ~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 689 QIAEMCYQRTKNF 701 (1202)
T ss_pred HHHHHHHHHhhhh
Confidence 8888888776543
No 439
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.77 E-value=4.3e+02 Score=28.51 Aligned_cols=145 Identities=12% Similarity=0.027 Sum_probs=89.3
Q ss_pred CCcHHHHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--C--ChhHH
Q 005174 408 EPNYVTIASILPLCARVA--NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--R--DEVTY 481 (710)
Q Consensus 408 ~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~~~~ 481 (710)
-|+..+..+++.-...-- ..+.|..++..|.+ . ..|--.+.|...--+-..|+...|...+..... | .-++.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-P-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-C-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 466666666655443322 22333333333322 2 233333333322233446888888888876542 2 33455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
..|.....+.|...+|-.++.+..... ...+.++..+.+++.-..+++.|.+.|+...+. .|+ .++-+.|...
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~---~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL---TTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc---CCCChhhHHHHHHH
Confidence 556667777778888888888877654 445678888888998889999999999988764 555 5555555443
No 440
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.94 E-value=1.9e+02 Score=23.76 Aligned_cols=22 Identities=14% Similarity=-0.105 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHH
Q 005174 620 LIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~m 641 (710)
.-+-++...|+-+||.+.++..
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 3445667788888888877643
No 441
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=32.68 E-value=1.8e+02 Score=22.58 Aligned_cols=60 Identities=8% Similarity=0.021 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCch
Q 005174 94 KQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157 (710)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 157 (710)
..+...+++.|+ .+..-.-...+..-+.+.+.++++.++.+++.+|..+..++-..+...
T Consensus 23 ~~v~~~L~~~gv----lt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~ 82 (90)
T cd08332 23 DELLIHLLQKDI----LTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEH 82 (90)
T ss_pred HHHHHHHHHcCC----CCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHH
Confidence 345555555552 222223333344456788888888888888888888888886655433
No 442
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=32.57 E-value=4.8e+02 Score=25.47 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=18.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 005174 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426 (710)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 426 (710)
..|..+|.+.+|.++.+..+... +.+...+..++..+...|+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhcc
Confidence 34444444555544444444332 3333444444444444444
No 443
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.37 E-value=6.4e+02 Score=27.15 Aligned_cols=120 Identities=11% Similarity=-0.037 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC--Chh---HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHh
Q 005174 213 NALVSMYGKFGQVDVARRLFDKMLER--DAV---SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287 (710)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 287 (710)
..|+.-|.+.+++++|..++..|.=. ... +.+.+...+.+..--.+....++.+...=..|....-.....-|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 35777899999999999999999422 122 3344455555555445555555555433233332221222222211
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 005174 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339 (710)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~ 339 (710)
-=.+-|.++|..|...+ .|...+......|+.+.-..+|-.+...
T Consensus 492 -~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~ 536 (545)
T PF11768_consen 492 -PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDK 536 (545)
T ss_pred -HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhc
Confidence 11233445555554432 2233333334445555555555444443
No 444
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=31.91 E-value=4.9e+02 Score=25.38 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=35.4
Q ss_pred CCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHH
Q 005174 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTSLIAGYGIQGEGRVALKLFE 502 (710)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (710)
.++..+...+++.+++.+++..-.++++.... .|...|..+|+.....|+..-..++..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 44455555666666666666666666654432 366677777777777777654444443
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.79 E-value=71 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
--.+|.+|.+.|++++|.++.+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34467888888888888888877764
No 446
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.46 E-value=1.7e+02 Score=30.26 Aligned_cols=109 Identities=15% Similarity=0.114 Sum_probs=56.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CC
Q 005174 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA---GL 564 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~ 564 (710)
+...|++.+|+..|+.++. ...+.........+++.+++...++- +...-+..-.|. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~----------~i~l~vv~~~~E~~e~~eli~icrEY--------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILH----------SIPLLVVESREEEDEAKELIEICREY--------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHH----------HHHC--BSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHH----------HhheeeecCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccc
Confidence 3567889999998888763 12222222333345555555444331 111112222211 11
Q ss_pred HHHH------HHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 565 LNKA------KEIITKMPYTPT--SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 565 ~~~A------~~~~~~m~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.++. ..+|......|. ..++++-++.+.+++|+..|....++++++.|..
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 2222 223333344442 4466777788899999999999999999998854
No 447
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.77 E-value=4e+02 Score=26.57 Aligned_cols=47 Identities=9% Similarity=0.059 Sum_probs=22.6
Q ss_pred CchHhHHHHHHHHHHhC---CCCCCchh--hHHHHHHHccCChhHHHHhHhh
Q 005174 88 KALAQGKQLHACAIALG---LEKNPVLV--PKLVTFYASFSLYNNACFLVEN 134 (710)
Q Consensus 88 ~~~~~a~~~~~~~~~~~---~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 134 (710)
++.+++.+..+.+++.- -.|+...+ +.....+...|++..+++.+++
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 35555555555554321 12333322 3344455555666666666554
No 448
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.53 E-value=5.5e+02 Score=25.50 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=58.3
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCC--------ChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChH---
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRR--------DEVTYTS-LIAGYGIQGEGRVALKLFEEMNKNQIKPDHV--- 514 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 514 (710)
...+-....-|++.|+-+.|.+.+.+--++ |++.+.. |.-.|..+.-..+-++-.+.+.+.|-.-+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345566677888888888888888765433 4444433 2233444444566666667777777654433
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 005174 515 -TMVAVLSACSHSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 515 -t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 542 (710)
+|-.+- |....++.+|-.+|-.....
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 455543 44556788888888776654
No 449
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.51 E-value=5.5e+02 Score=25.50 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCChHHHHHHHHH-hhccCcHHHHHHHHHHHHHHhCCCCCh-hHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNK----NQIKPDHVTMVAVLSA-CSHSGLVVEGQKQFERMTSIYGIFPQL-EHF 552 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~ 552 (710)
..+-....-|++.|+-+.|++.+.+-.+ .|.+.|...+..-+.- |....-+.+-.+..+.+.++ |-..+. .-+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDWeRrNRl 183 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCChhhhhhH
Confidence 3566677889999999999988876543 5788887765544432 34444455555666666665 555542 222
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhC
Q 005174 553 ACMVDLYG-RAGLLNKAKEIITKM 575 (710)
Q Consensus 553 ~~li~~~~-~~g~~~~A~~~~~~m 575 (710)
...-.+|+ ...++.+|-.+|-+.
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22222232 345778887776543
No 450
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.48 E-value=1.3e+03 Score=29.99 Aligned_cols=155 Identities=9% Similarity=-0.032 Sum_probs=78.1
Q ss_pred HHHHHhcCCHHHHHHHHhhc----CCCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcC
Q 005174 216 VSMYGKFGQVDVARRLFDKM----LERD--AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289 (710)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 289 (710)
..+-.+++.+..|...+++- .+.+ ..-|-.+...|+.-+++|...-+...-. -.| +...-|......|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a~~---sl~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF---ADP---SLYQQILEHEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh---cCc---cHHHHHHHHHhhc
Confidence 33445667777777777763 1111 1223333347777777776655554311 111 2233444556677
Q ss_pred ChHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHH-HHHHHHHHhcCCHHHHHHH
Q 005174 290 NFKGVLELLSRMRTQETYLD-SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR-NALITMYSRCKDLRHAYIL 367 (710)
Q Consensus 290 ~~~~a~~~~~~m~~~~~~p~-~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~ 367 (710)
++..|...|+.+.+.+ |+ ..+++-++......+.++...-..+..... ..+...-+ +.=+.+--+.++++.....
T Consensus 1464 ~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred cHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 7777777777777653 33 445555555555555555444433222221 11222222 2223333556666666555
Q ss_pred HHhcCCCChhHHHHH
Q 005174 368 FKMTAEKSIITWNSM 382 (710)
Q Consensus 368 ~~~~~~~~~~~~~~l 382 (710)
.. .++...|...
T Consensus 1541 l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVE 1552 (2382)
T ss_pred hh---cccccchhHH
Confidence 54 4555566554
No 451
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.45 E-value=6.2e+02 Score=26.05 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=82.5
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRR------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
..+.-+.+-|..||+++.|.+.+.+...- -+..|-.+|..-.-.|+|........+.... |+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~--------- 218 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PD--------- 218 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---ch---------
Confidence 34677778888888888888888774421 1223444444444445555544444444321 10
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHH
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP---------YTP-TSAMWATLLGAC 591 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p-~~~~~~~l~~~~ 591 (710)
+ ...... .+.+....+..+.....+ ++..|.+.|-..+ +.| |..+| ..+.+.
T Consensus 219 ----------~---~~~~~q--~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iY-ggLcAL 280 (466)
T KOG0686|consen 219 ----------A---NENLAQ--EVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIY-GGLCAL 280 (466)
T ss_pred ----------h---hhhHHH--hcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHH-HhhHhh
Confidence 0 111211 234446667777666665 6666665554432 234 33444 334443
Q ss_pred HhcCChHH-----HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 592 QIHRNTGI-----GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 592 ~~~g~~~~-----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+..++-+. ....++.+++++|. ...++..-| .+++..-.+++++++
T Consensus 281 Atfdr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy--~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 281 ATFDRQDLKLNVIKNESFKLFLELEPQ---LREILFKFY--SSKYASCLELLREIK 331 (466)
T ss_pred ccCCHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHh--hhhHHHHHHHHHHhc
Confidence 33332221 23456777788774 333343333 356777666665554
No 452
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.42 E-value=6.9e+02 Score=26.56 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=7.6
Q ss_pred ccCChhHHHHhHhh
Q 005174 121 SFSLYNNACFLVEN 134 (710)
Q Consensus 121 ~~g~~~~A~~~~~~ 134 (710)
..|+.+-...+++.
T Consensus 117 ~~~~~~iv~~Ll~~ 130 (480)
T PHA03100 117 KSNSYSIVEYLLDN 130 (480)
T ss_pred ccChHHHHHHHHHc
Confidence 55555555555554
No 453
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=30.27 E-value=9.4e+02 Score=28.11 Aligned_cols=152 Identities=11% Similarity=0.101 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYG 560 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 560 (710)
|..+.-++..++.+......++..+.. +..--.+.+.++...+. .+...+++..-.++.-.|- ..-|-++.-.-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 444555555554433333344444332 22222233344443333 2333444444444344454 333433332222
Q ss_pred hcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 005174 561 RAGLLNKAKEIITKMPYT-PTSAMWATLLGACQIHR-------NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632 (710)
Q Consensus 561 ~~g~~~~A~~~~~~m~~~-p~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (710)
..+-++...++.+.-.+. .++.-.++|+.+++..+ +.+.-.-+.+.++++++-||..=..|+..+.+-.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 222223333332222122 24556678888875332 2233456778889999999999999999999999999
Q ss_pred HHHHH
Q 005174 633 KLAKV 637 (710)
Q Consensus 633 ~A~~~ 637 (710)
+..+-
T Consensus 832 ~~r~~ 836 (863)
T TIGR02414 832 PKRQE 836 (863)
T ss_pred HHHHH
Confidence 88774
No 454
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=29.39 E-value=5.4e+02 Score=25.04 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=51.5
Q ss_pred hhHHHHHHhhcCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhcc-------CcHH
Q 005174 463 VPEAKSVFDLMSRR-DEVTYTSLIAGYGI----QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS-------GLVV 530 (710)
Q Consensus 463 ~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------g~~~ 530 (710)
..+|.+.|....+. +......|...|.. ..+..+|..+|++..+.|..+-..+...+-..+... -+..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence 44555555544333 22233334444433 236677777777777766544312222222222221 1223
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCC
Q 005174 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AGLLNKAKEIITKMP 576 (710)
Q Consensus 531 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 576 (710)
.|...+.++... + +......+..+|.. ..+.++|...|.+..
T Consensus 173 ~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 173 KALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred hHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 566666666554 2 22233334444422 336666666666653
No 455
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.37 E-value=5.7e+02 Score=25.31 Aligned_cols=81 Identities=12% Similarity=0.079 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHhCCC---CCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-CChhHHHHHHHHHHhcCChHHHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMF---NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVALKLFE 502 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (710)
...+.+.+......+.. ..++.....+.....+.|..+.-..+++.... .+..-...++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 55666666666664312 33445555566666666665555555554443 244555666666666666666666666
Q ss_pred HHHHC
Q 005174 503 EMNKN 507 (710)
Q Consensus 503 ~m~~~ 507 (710)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 66654
No 456
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=29.31 E-value=90 Score=30.21 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=44.2
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 559 YGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
..+.|+.++|..+|+.. ...| +...+.-+......+++.-+|.+.+-+++.+.|.+.+..+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 45789999999998865 3344 34455555555566778888888888899999988766543
No 457
>PRK14015 pepN aminopeptidase N; Provisional
Probab=29.00 E-value=9.9e+02 Score=27.98 Aligned_cols=152 Identities=11% Similarity=0.123 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYG 560 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 560 (710)
|..+..++..+..+.....+++..+.. +..--.+.+.++.+.+. .+....++..-+++.-.|- ..-|-++.-.-.
T Consensus 686 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 761 (875)
T PRK14015 686 NVCLSYLAAADDEEAAELAEAQFDQAD---NMTDRLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSP 761 (875)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCC---CHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCC
Confidence 344444444444333333444444432 22222233444444333 2334444444444344454 333433332222
Q ss_pred hcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 005174 561 RAGLLNKAKEIITKMPYT-PTSAMWATLLGACQIHR-------NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632 (710)
Q Consensus 561 ~~g~~~~A~~~~~~m~~~-p~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (710)
..+-++...++.+.-.+. .++.-.++|+.+++..+ +-..-.-+.+.++++++-||..=..|+..+.+-.+++
T Consensus 762 ~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~ 841 (875)
T PRK14015 762 APDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYD 841 (875)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccC
Confidence 222233333332222222 24556678888875332 2223456778889999999999999999999999999
Q ss_pred HHHHH
Q 005174 633 KLAKV 637 (710)
Q Consensus 633 ~A~~~ 637 (710)
+..+.
T Consensus 842 ~~r~~ 846 (875)
T PRK14015 842 PKRQA 846 (875)
T ss_pred HHHHH
Confidence 87764
No 458
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=28.80 E-value=3.1e+02 Score=29.00 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--------CCchHHHH
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE--------NSGYYVLI 621 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~~l 621 (710)
..|-..+.-|...+++++|.++.+-.. +...|-+|......+.+...++.++.-+.+++.- -+..=..+
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~m 650 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQM 650 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHH
Confidence 346666677777888888888877654 5567777777777777777777777666554311 01122334
Q ss_pred HHHHHhcCCchHHHHHH
Q 005174 622 ANMYAATGCWDKLAKVR 638 (710)
Q Consensus 622 ~~~~~~~g~~~~A~~~~ 638 (710)
+....-.|+..||.-++
T Consensus 651 A~~~l~~G~~~eAe~iL 667 (737)
T KOG1524|consen 651 AENSLMLGRMLEAETIL 667 (737)
T ss_pred HHHHHHhccchhhhHHH
Confidence 44444556666666553
No 459
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.78 E-value=3.2e+02 Score=28.57 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=9.9
Q ss_pred CHHHHHHHHhhcCC
Q 005174 224 QVDVARRLFDKMLE 237 (710)
Q Consensus 224 ~~~~A~~~~~~~~~ 237 (710)
++++|..+.+.+++
T Consensus 29 d~~eav~y~k~~p~ 42 (480)
T TIGR01503 29 DLQDAVDYHKSIPA 42 (480)
T ss_pred CHHHHHHHHHhCCc
Confidence 67777777777754
No 460
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.94 E-value=5.5e+02 Score=25.29 Aligned_cols=92 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh----------cCChhH
Q 005174 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR----------SGKVPE 465 (710)
Q Consensus 396 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~ 465 (710)
.++++.|...++.|.-..|..+.-.+.+.=.+.....+|+.+.... .. +..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 005174 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGE 493 (710)
Q Consensus 466 A~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (710)
..++++.-..-|+...-.+.+.+.....
T Consensus 337 nmkLLQ~yp~tdi~~~l~~A~~Lr~~k~ 364 (370)
T KOG4567|consen 337 NMKLLQNYPTTDISKMLAVADSLRDKKH 364 (370)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccc
No 461
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.99 E-value=6.6e+02 Score=25.25 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 428 (710)
..+.+.+++.++.+.+..+-+.+..-......++..++-...-.+...+.+.+..+.. ||......++++.+......
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASD 247 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchh
Confidence 3455666666666665555555555444455566666555554444333333333332 88888888888888877766
Q ss_pred HHHHHHHHHHHhC
Q 005174 429 HGKEFHCYILRRA 441 (710)
Q Consensus 429 ~a~~~~~~~~~~~ 441 (710)
.....+..++...
T Consensus 248 ~~~~~i~~~L~~~ 260 (340)
T PF12069_consen 248 LVAILIDALLQSP 260 (340)
T ss_pred HHHHHHHHHhcCc
Confidence 6666566666554
No 462
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.59 E-value=2.4e+02 Score=26.91 Aligned_cols=13 Identities=23% Similarity=0.077 Sum_probs=4.8
Q ss_pred cCcHHHHHHHHHH
Q 005174 526 SGLVVEGQKQFER 538 (710)
Q Consensus 526 ~g~~~~a~~~~~~ 538 (710)
.|++++|.++|+.
T Consensus 191 ~g~~~~A~~~l~~ 203 (247)
T PF11817_consen 191 LGDYDKALKLLEP 203 (247)
T ss_pred CCCHHHHHHHHHH
Confidence 3333333333333
No 463
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.40 E-value=1.5e+02 Score=30.91 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=62.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHH-HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA-VLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL 564 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 564 (710)
.+...+.++.|..++.+.++ +.||...|-. =-.++.+.+++..|..=+..+.+ +.|+ ...|-.=..++.+.++
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhHHH
Confidence 34455677778888877776 4665443322 22566677777777766666654 3465 4444444455555667
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 005174 565 LNKAKEIITKM-PYTPTSAMWATLLGACQIH 594 (710)
Q Consensus 565 ~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~ 594 (710)
+.+|...|+.. ...|+..-....+.-|...
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 77777777666 3567666666666665433
No 464
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.15 E-value=3e+02 Score=21.00 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH
Q 005174 357 RCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395 (710)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 395 (710)
...+.+.+.++++.++.++..+|.....++...|+..-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 445677788888888888888888888888777765443
No 465
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=25.64 E-value=81 Score=23.57 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHcCcccCCccc
Q 005174 674 AQEIYPLLGGLTELMKDAGYVVKEEFC 700 (710)
Q Consensus 674 ~~~~~~~l~~l~~~~~~~g~~~~~~~~ 700 (710)
..++.+.+++-.+++|..|+.||.-.+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 346777888888999999999997655
No 466
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=25.27 E-value=1.6e+02 Score=18.47 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=22.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
.+|..|+++-...+++++|.+=++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 568889999999999999988776654
No 467
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.26 E-value=4.5e+02 Score=23.65 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=11.2
Q ss_pred HhhccCcHHHHHHHHHHHH
Q 005174 522 ACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~ 540 (710)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 4556666666666665554
No 468
>PHA02875 ankyrin repeat protein; Provisional
Probab=25.10 E-value=7.8e+02 Score=25.48 Aligned_cols=200 Identities=9% Similarity=0.044 Sum_probs=98.0
Q ss_pred HHHHHHHHhCCCCCCch--hhHHHHHHHccCChhHHHHhHhhCCCCCCc--cHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 005174 95 QLHACAIALGLEKNPVL--VPKLVTFYASFSLYNNACFLVENSNIRYPL--PWNLLISLYVRDGFYAEALCVYKQMQSRR 170 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~l~~~m~~~g 170 (710)
++.+.+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...++.|+.+.+..+++ .|
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cC
Confidence 34555566776665432 455666667788888777666654333322 12234556667788766555554 33
Q ss_pred CCCCcc---cHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHH--HHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhH
Q 005174 171 IRGDNF---TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKMLER---DAVS 242 (710)
Q Consensus 171 ~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~ 242 (710)
...+.. .-.+.+...+..|+.+-.+.+.+ .|..++... ..+.+...+..|+.+-+..+++.-... |..-
T Consensus 92 ~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~---~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 168 (413)
T PHA02875 92 KFADDVFYKDGMTPLHLATILKKLDIMKLLIA---RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCG 168 (413)
T ss_pred CcccccccCCCCCHHHHHHHhCCHHHHHHHHh---CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Confidence 221111 11123333444555544433332 454443221 123344455677777777666654332 2222
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 005174 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW---NTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310 (710)
Q Consensus 243 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 310 (710)
++.+. ..+..|+.+ +.+.+.+.|..++...- .+++...+..|+.+ +.+-+.+.|..++.
T Consensus 169 ~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 169 CTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 33333 334455543 34445566666654321 23444444555543 44444556655553
No 469
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.10 E-value=6.1e+02 Score=27.88 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChH------HHHHHHHHHHHcCCCCceehHHHH
Q 005174 214 ALVSMYGKFGQVDVARRLFDKMLER------DAVSWNTMISAYASKGLWK------EAFQLFVEMQEEGVEVNVITWNTI 281 (710)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~~~~~l 281 (710)
+|..+|...|++-.+.++++..... =...||..|+.+.+.|.++ .|.+++++. .+.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7888999999999999998887332 2457888888888888754 233333333 356677888888
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 005174 282 AGGCLRTGNFKGVLELLSRMR 302 (710)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~ 302 (710)
+.+...--+-.-.+-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776655433333344444443
No 470
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=24.96 E-value=1.8e+02 Score=21.28 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005174 191 VDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222 (710)
Q Consensus 191 ~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~ 222 (710)
.+.|+.++..+...-..++..||++...+.+.
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 34555555555544556677777776665553
No 471
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=24.95 E-value=6.3e+02 Score=24.32 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHH
Q 005174 38 INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFC 83 (710)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~ 83 (710)
--++.++..+.+.+...+|+.+.+.+... ..-.. ++..++..
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~--~LE~LLh~ 124 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRSL--PYFSH--ALELLLHT 124 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHH--HHHHHHHH
Confidence 34667888888889999999988887643 22222 55555543
No 472
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.93 E-value=4.2e+02 Score=23.89 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005174 555 MVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g 595 (710)
.+-.|.+.|.+++|.+++++.-..|+......-+....+.+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 35567788888888888888754566555554444443333
No 473
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.82 E-value=2.1e+02 Score=22.99 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=8.8
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 005174 282 AGGCLRTGNFKGVLELLSRM 301 (710)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m 301 (710)
+..|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444555555444443
No 474
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=24.78 E-value=6.4e+02 Score=26.05 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=25.5
Q ss_pred HHHHHHHcCCCCcee---hHHHHHHHHHhcCChHHHHHHHHH
Q 005174 262 LFVEMQEEGVEVNVI---TWNTIAGGCLRTGNFKGVLELLSR 300 (710)
Q Consensus 262 ~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~ 300 (710)
+++.+.+.|+.|+.. +-.+++.++...+..++..+++..
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~ 142 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDG 142 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhc
Confidence 455667778888754 356667666666666666666653
No 475
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.76 E-value=4.1e+02 Score=22.15 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 532 GQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIIT 573 (710)
Q Consensus 532 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 573 (710)
...+|..|... ||--. ...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45567766665 66555 4556667777777777777777765
No 476
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.13 E-value=6.5e+02 Score=24.18 Aligned_cols=88 Identities=14% Similarity=0.059 Sum_probs=44.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-----------CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHH
Q 005174 381 SMLSGYTHLDCAEESAFLFREMFRSGVE-----------PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449 (710)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-----------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 449 (710)
-+...|...+.+.+..++++++..+-.. .-...|..-++.|....+-..-..++...+.-..-.|.+.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 3444555555555555555555432110 01124555556666666666666666665543323444443
Q ss_pred HhHH----hhhhhhcCChhHHHH
Q 005174 450 WNSL----VEMYARSGKVPEAKS 468 (710)
Q Consensus 450 ~~~l----i~~~~~~g~~~~A~~ 468 (710)
...+ ..+..+.|++++|..
T Consensus 230 mGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HhHHHHcCCccccccchHHHHHh
Confidence 3332 234455677776643
No 477
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=23.70 E-value=3.5e+02 Score=20.91 Aligned_cols=62 Identities=8% Similarity=-0.028 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCC-chHHHHHHHHH
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE--NSGYYVLIANMYAATGC-WDKLAKVRTCM 641 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~-~~~A~~~~~~m 641 (710)
|......+...+...|+++.|...+-.+++.+|+ +...-..|+.++.-.|. -.-+.+.+.+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3344444445555555555554444444444432 23444555555555554 23444444443
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.64 E-value=3.8e+02 Score=23.74 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=31.9
Q ss_pred HHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCCh
Q 005174 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326 (710)
Q Consensus 267 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~ 326 (710)
+..|++++.. -..++..+...++.-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445544422 2234444444455556666666666666666666655556666555544
No 479
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.42 E-value=7.5e+02 Score=24.69 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCC------------hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 005174 375 SIITWNSMLSGYTHLDC------------AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442 (710)
Q Consensus 375 ~~~~~~~li~~~~~~g~------------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 442 (710)
|+.+|-.++..--..-. .+.-+.++++.++. -+-+.......|..+.+..+.+...+-++.++...
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Q ss_pred CCCchHHHhHHhhhhhh---cCChhHHHHHHhhcCCC---------------------ChhHHHHHHHHHHhcCChHHHH
Q 005174 443 FNEHLLLWNSLVEMYAR---SGKVPEAKSVFDLMSRR---------------------DEVTYTSLIAGYGIQGEGRVAL 498 (710)
Q Consensus 443 ~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~---------------------~~~~~~~li~~~~~~g~~~~A~ 498 (710)
+.+..+|...++.... .-.++....+|.+..+. -+..+.-+...+.+.|..+.|+
T Consensus 96 -~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av 174 (321)
T PF08424_consen 96 -PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV 174 (321)
T ss_pred -CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH
Q ss_pred HHHHHHHHCCC
Q 005174 499 KLFEEMNKNQI 509 (710)
Q Consensus 499 ~~~~~m~~~g~ 509 (710)
.+++-+.+.++
T Consensus 175 a~~Qa~lE~n~ 185 (321)
T PF08424_consen 175 ALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHc
No 480
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=23.25 E-value=1.6e+02 Score=28.71 Aligned_cols=42 Identities=10% Similarity=-0.037 Sum_probs=28.4
Q ss_pred CHHHHHHH-HHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 580 TSAMWATL-LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 580 ~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
|+..|-.. -.-+..++|++.++..+...+.++|++|..|...
T Consensus 140 nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 140 NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 45555331 2235667888888888888888888888776543
No 481
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.95 E-value=1e+03 Score=26.11 Aligned_cols=267 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005174 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305 (710)
Q Consensus 226 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (710)
+-+....+.+.++....++.|+. ..+.=+.+.-.++++++.. .. ...+..++++....|-.....-+.+.+....
T Consensus 296 ~L~~~~~~~~~~~~~~~f~~lv~-~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 296 HLVQDIASDVQEPAAAKFLRLVR-LLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred HHHHHHHHHhccchHHHHHHHHH-HHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q ss_pred CCC-ChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 005174 306 TYL-DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384 (710)
Q Consensus 306 ~~p-~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 384 (710)
+.+ ........+-........+....++..+..........++.+.+- ++.+++.
T Consensus 371 ~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l------------------------~~~~lv~ 426 (574)
T smart00638 371 ITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALL------------------------AYGSLVR 426 (574)
T ss_pred CCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHH------------------------HHHHHHH
Q ss_pred HHHhcCCh------HHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhh
Q 005174 385 GYTHLDCA------EESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457 (710)
Q Consensus 385 ~~~~~g~~------~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (710)
.+|..... ++....+.+...... .-|..--...|.++++.|.......+...+. |....+..+-...+.++
T Consensus 427 ~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~--~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 427 RYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE--GAEPLSTFIRLAAILAL 504 (574)
T ss_pred HHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC--CCCCCCHHHHHHHHHHH
Q ss_pred hhc--CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChHHHHHHHHHh
Q 005174 458 ARS--GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK-NQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 458 ~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~ 523 (710)
-+. ...+.+..++-.+-.........-+.+|...=+.+--...++.|.. ....||...-+-+.+..
T Consensus 505 r~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 505 RNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 482
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.94 E-value=8.8e+02 Score=25.29 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=30.5
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhcc
Q 005174 481 YTSLIAGYGI---QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526 (710)
Q Consensus 481 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 526 (710)
+..++.++.+ ..+.+.|+.++.+|.+.|..|....-..+..++...
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 3444555544 478889999999999988888765555555444333
No 483
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=22.75 E-value=3.3e+02 Score=20.36 Aligned_cols=73 Identities=14% Similarity=0.015 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCC---ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCC
Q 005174 96 LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYP---LPWNLLISLYVRDGFYAEALCVYKQMQSRRIR 172 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~ 172 (710)
+.+.+++.+...+. .+..+...+..|+.+-+..+++.-..++. .-++.+..+ +..|+ .++++.+.+.|..
T Consensus 12 ~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~----~~~~~~Ll~~g~~ 84 (89)
T PF12796_consen 12 ILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYA-AENGN----LEIVKLLLEHGAD 84 (89)
T ss_dssp HHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTH----HHHHHHHHHTTT-
T ss_pred HHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHH-HHcCC----HHHHHHHHHcCCC
Confidence 34444444433333 33455555666777666666665433332 234444443 33333 3445555566665
Q ss_pred CCc
Q 005174 173 GDN 175 (710)
Q Consensus 173 p~~ 175 (710)
++.
T Consensus 85 ~~~ 87 (89)
T PF12796_consen 85 VNI 87 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 553
No 484
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.60 E-value=6e+02 Score=23.26 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-hHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeE
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSG-YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVF 661 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 661 (710)
..+.++..|...||.+.|-+++-.++...+-|.. .|..=+.++.+.+.-....+.++.|...-..+..-...+.-....
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 4556677777778888887777777776554433 333444556666655555466666643221111111111111234
Q ss_pred EEEeeCCCCC
Q 005174 662 SPFLVDDTSN 671 (710)
Q Consensus 662 ~~~~~~~~~~ 671 (710)
+.|..|...|
T Consensus 123 pvfrsGs~t~ 132 (199)
T PF04090_consen 123 PVFRSGSRTH 132 (199)
T ss_pred ccccCCCccc
Confidence 5677777776
No 485
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.43 E-value=9.4e+02 Score=25.48 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=72.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCC-CCC--hh-----HHHHHHH-HhhccCChHHHHHHHHHHHhhcCCCchhH--HHHHHH
Q 005174 285 CLRTGNFKGVLELLSRMRTQET-YLD--SV-----ATVIGLG-ACSHVGALKLGKEIHGSAVRGCYGEYENV--RNALIT 353 (710)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~~~-~p~--~~-----t~~~~l~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~--~~~li~ 353 (710)
-.-.|++.+|++-+..|++.-. .|. .. ....++. .|...+.++.|+.-|....+.--..|... -..+.-
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 3456888999988888887532 222 11 1122222 34556777777777766665544333322 334556
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHH--------HHH--HHhcCChHHHHHHHHHHHHc
Q 005174 354 MYSRCKDLRHAYILFKMTAEKSIITWNSM--------LSG--YTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~--~~~~g~~~~a~~~~~~m~~~ 405 (710)
.|.+.|+.+.-.++++.+..+|..++.+- +.| ....+++.+|...+++-.+.
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 78888888888888888777655443321 111 23567788888777776553
No 486
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=6.8e+02 Score=23.81 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=33.2
Q ss_pred hcccccCCCCCCcchhhhhHHHHHHHHHhCCCchHHHHHHHHhH
Q 005174 21 FIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIR 64 (710)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 64 (710)
-..+-|+......--.+..++.-.+-+.+.|++.+|...|..+.
T Consensus 162 Yq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi 205 (329)
T KOG0545|consen 162 YQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAI 205 (329)
T ss_pred hccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHH
Confidence 44566776666666667777777888899999999988887653
No 487
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.35 E-value=2.7e+02 Score=26.59 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
...-|..-|.+.|++++|.++|+.+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3446788899999999999999987
No 488
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.33 E-value=7.6e+02 Score=24.38 Aligned_cols=82 Identities=12% Similarity=-0.043 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005174 529 VVEGQKQFERMTSIYGI---FPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605 (710)
Q Consensus 529 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 605 (710)
.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.+...+.+.-.++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 66788888888763111 335566677777778888877766677666656678888888999888888888888888
Q ss_pred HHHhh
Q 005174 606 KLLET 610 (710)
Q Consensus 606 ~~~~~ 610 (710)
.++.-
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 88873
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.21 E-value=3.3e+02 Score=24.12 Aligned_cols=45 Identities=11% Similarity=-0.097 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccC
Q 005174 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189 (710)
Q Consensus 145 ~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 189 (710)
.++..+...++.-.|.++++.+.+.+..++..|.-..|..+.+.|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444455556666666665555555554444444444443
No 490
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=21.85 E-value=4.8e+02 Score=21.80 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChHHH
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA-TLLGACQIHRNTGIG 600 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~l~~~~~~~g~~~~a 600 (710)
+..++.-++.=.|..++|.++++..+--+.-...| -++..|+...+.++-
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev 118 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEV 118 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHH
Confidence 34445555555555566655555554333333332 344555554444333
No 491
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=21.83 E-value=9.9e+02 Score=25.47 Aligned_cols=234 Identities=11% Similarity=0.043 Sum_probs=111.2
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccC------chHHHHHHHHHHHHhCCCCC-chHHHhHHhhhhhhcCChhH-HHH
Q 005174 397 FLFREMFRSGVEPNYVTIASILPLCARVA------NLQHGKEFHCYILRRAMFNE-HLLLWNSLVEMYARSGKVPE-AKS 468 (710)
Q Consensus 397 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~-A~~ 468 (710)
.+|++.... -|+...+...|..|...- .+.....+++...+.+...+ ....|..+.-++.+.....+ |..
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 455554432 344444544555443221 33444455555555443332 34455555555555544333 333
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcC-ChHH-HHHHHHHHHHCCCCCChHHHHHHHHHhhccCc-HHHH--HHHHHHHHHHh
Q 005174 469 VFDLMSRRDEVTYTSLIAGYGIQG-EGRV-ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL-VVEG--QKQFERMTSIY 543 (710)
Q Consensus 469 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a--~~~~~~~~~~~ 543 (710)
+-.+..+.+...|-.-+....... +.+- -..+|......-..+-...|++.. .|+ .... ..++....+
T Consensus 381 l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s-- 453 (568)
T KOG2396|consen 381 LTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS-- 453 (568)
T ss_pred hhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH--
Confidence 333444556666655544444221 2111 122233333322222233333333 111 1111 112222222
Q ss_pred CCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 544 GIFPQLE-HFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLLGAC--QIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 544 ~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
-..|+.. .-+.+++-+.+.|-.++|...+.+.. . +|+...+..++..- ...-+..-++..++.+..-...++..|
T Consensus 454 ~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 454 VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLW 533 (568)
T ss_pred hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHH
Confidence 2345533 34567777788888888888887763 2 34666666666432 122235556677776665444566666
Q ss_pred HHHHHHHHhcCCchHHHHHHH
Q 005174 619 VLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~ 639 (710)
......-...|+-+.+-.++.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ 554 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYW 554 (568)
T ss_pred HHHHHhhccCCCcccccHHHH
Confidence 655555446666555555543
No 492
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.69 E-value=5e+02 Score=25.53 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=27.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 353 TMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFR 404 (710)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 404 (710)
..+.+.+++......+..+. .+..-...+..+...|++..|++++.+...
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444443331 223334556667778888888888777654
No 493
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=21.69 E-value=3.5e+02 Score=20.23 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=5.4
Q ss_pred hcCCHHHHHHHHh
Q 005174 221 KFGQVDVARRLFD 233 (710)
Q Consensus 221 ~~g~~~~A~~~~~ 233 (710)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444444444
No 494
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.58 E-value=9.4e+02 Score=25.11 Aligned_cols=237 Identities=12% Similarity=0.016 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHH
Q 005174 40 LLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY 119 (710)
Q Consensus 40 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (710)
+.+-|.++...| ..+.+.+-........+. .+.....++....+......+ ++.--.++..+....+..+
T Consensus 41 L~AhLdgL~~~G--~~a~~~L~~aL~~d~~~e----v~~~aa~al~~~~~~~~~~~L----~~~L~d~~~~vr~aaa~AL 110 (410)
T TIGR02270 41 LLAHVDGLVLAG--KAATELLVSALAEADEPG----RVACAALALLAQEDALDLRSV----LAVLQAGPEGLCAGIQAAL 110 (410)
T ss_pred HHHHHHHHHHhh--HhHHHHHHHHHhhCCChh----HHHHHHHHHhccCChHHHHHH----HHHhcCCCHHHHHHHHHHH
Confidence 344577888888 567776666654332232 344444444433222212222 2222245555777888888
Q ss_pred HccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHH
Q 005174 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199 (710)
Q Consensus 120 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 199 (710)
.+.+.......+..-+...++..-...+.++...+. .+...+....+ .+|...-...+.+++..+..+....+.
T Consensus 111 g~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~- 184 (410)
T TIGR02270 111 GWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLR- 184 (410)
T ss_pred hcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHH-
Confidence 887777776666666666666555555566655432 12333333332 345555555556655555443222222
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH
Q 005174 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDK-MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278 (710)
Q Consensus 200 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 278 (710)
.+ -...|..+-..-+.+....|. ..|...+.. ...++....-.+...+...| ..++...+..+.+. ..+-
T Consensus 185 ~a--l~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d-----~~vr 255 (410)
T TIGR02270 185 LY--LRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA-----AATR 255 (410)
T ss_pred HH--HcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC-----hhhH
Confidence 11 123444555555555666666 445444443 33333333333333332222 22555555554332 1144
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 005174 279 NTIAGGCLRTGNFKGVLELLSRM 301 (710)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m 301 (710)
...+.++.+.|+...+--+.+.|
T Consensus 256 ~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 256 REALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHHHHHcCCcchHHHHHHHh
Confidence 44555555566555544444444
No 495
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=21.30 E-value=2.3e+02 Score=18.93 Aligned_cols=30 Identities=7% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHhCCCCC
Q 005174 42 ETLKDFAGRGNLSKAFEAFTRIRITAASHD 71 (710)
Q Consensus 42 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~ 71 (710)
.-|+.+...|--.+++.+.-++.+.|+.|.
T Consensus 9 ~eiS~lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 9 HEISDLLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 345666777888888888888888888887
No 496
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.28 E-value=5e+02 Score=22.30 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=20.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 005174 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423 (710)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 423 (710)
.++..+.+.++.-.|.++++++.+.+...+..|.-..|..+..
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 3444444444445555555555555544444444444444333
No 497
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=20.84 E-value=4.9e+02 Score=21.56 Aligned_cols=60 Identities=8% Similarity=0.008 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHH-------HHHhC-CC-CCCHHHHHHHH----HHHHhcCChHHHHHHHHHHHhh
Q 005174 551 HFACMVDLYGRAGLLNKAKE-------IITKM-PY-TPTSAMWATLL----GACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~-------~~~~m-~~-~p~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
++..|..++.+.|++++++. +|++= .. +.....|-+.+ .++...|..++|...++..-+|
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34556666666666665433 33322 12 23344554433 3355667777777777766655
No 498
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=20.33 E-value=1.1e+02 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHcCcccCCccc
Q 005174 676 EIYPLLGGLTELMKDAGYVVKEEFC 700 (710)
Q Consensus 676 ~~~~~l~~l~~~~~~~g~~~~~~~~ 700 (710)
.++.--..+..+|+++||.|++.+.
T Consensus 49 ~L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 49 KLFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhhc
Confidence 3344445688999999999998553
No 499
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.27 E-value=2.4e+02 Score=20.29 Aligned_cols=49 Identities=6% Similarity=-0.035 Sum_probs=31.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc
Q 005174 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525 (710)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 525 (710)
+....++.++..++...-.++++..+.++.+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445667777777777777777777777777764 455556555555544
Done!