Query 005174
Match_columns 710
No_of_seqs 706 out of 4408
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 17:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-40 4.5E-45 367.5 38.5 500 119-646 63-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-39 7.6E-44 357.7 42.4 459 153-645 66-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.5E-25 3.2E-29 226.6 43.6 370 217-630 7-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.6E-27 5.5E-32 251.2 20.9 181 142-322 28-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-24 3.8E-29 226.1 40.7 368 248-688 7-386 (388)
6 4g26_A Pentatricopeptide repea 99.9 1.4E-26 4.6E-31 244.2 22.5 201 157-357 7-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.4E-22 1.5E-26 214.9 38.6 425 210-643 7-477 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.5E-21 8.5E-26 209.0 36.0 272 345-621 186-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 5.2E-21 1.8E-25 202.7 36.1 197 421-624 153-372 (450)
10 3fp2_A TPR repeat-containing p 99.9 3.6E-20 1.2E-24 201.1 35.7 421 210-645 26-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 7.3E-20 2.5E-24 193.8 34.1 295 343-644 24-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.5E-19 5.2E-24 196.1 35.3 435 142-619 27-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.6E-17 5.5E-22 169.7 35.8 308 350-690 8-355 (359)
14 1xi4_A Clathrin heavy chain; a 99.8 6.6E-15 2.3E-19 164.0 54.1 543 33-637 981-1585(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 4.5E-17 1.5E-21 166.4 32.9 309 276-629 4-354 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 4.3E-15 1.5E-19 165.5 49.8 484 88-637 853-1377(1630)
17 3hym_B Cell division cycle pro 99.8 1E-16 3.5E-21 161.7 28.6 286 342-631 19-321 (330)
18 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6E-22 166.1 20.3 354 221-645 15-386 (449)
19 2ooe_A Cleavage stimulation fa 99.8 2.9E-15 1E-19 161.7 39.5 209 429-644 256-492 (530)
20 2xm6_A Protein corresponding t 99.8 4.5E-15 1.5E-19 158.5 39.8 365 208-627 38-452 (490)
21 1b89_A Protein (clathrin heavy 99.8 2.6E-16 8.9E-21 157.7 26.8 184 120-330 14-197 (449)
22 3hym_B Cell division cycle pro 99.8 3E-16 1E-20 158.3 27.7 262 374-642 20-297 (330)
23 1fch_A Peroxisomal targeting s 99.8 1.1E-16 3.6E-21 164.5 24.3 279 355-639 35-354 (368)
24 2ooe_A Cleavage stimulation fa 99.8 1.5E-14 5.2E-19 156.1 42.0 403 203-614 7-496 (530)
25 4eqf_A PEX5-related protein; a 99.7 5.3E-16 1.8E-20 159.1 23.0 259 376-640 65-352 (365)
26 2xm6_A Protein corresponding t 99.7 9E-14 3.1E-18 148.4 40.9 352 238-646 37-434 (490)
27 3spa_A Mtrpol, DNA-directed RN 99.7 7.6E-18 2.6E-22 181.7 8.5 159 206-369 124-305 (1134)
28 1fch_A Peroxisomal targeting s 99.7 8.4E-16 2.9E-20 157.7 23.4 282 253-607 38-356 (368)
29 3mkr_A Coatomer subunit epsilo 99.7 1.5E-14 5.3E-19 142.1 30.8 270 354-637 8-287 (291)
30 4g1t_A Interferon-induced prot 99.7 1.4E-14 4.7E-19 154.2 32.0 370 239-655 50-470 (472)
31 3cv0_A Peroxisome targeting si 99.7 2E-15 6.7E-20 152.0 22.3 252 381-639 26-310 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 4E-15 1.4E-19 146.2 23.3 245 383-643 6-263 (291)
33 4eqf_A PEX5-related protein; a 99.7 7.8E-15 2.7E-19 150.3 23.1 231 411-645 65-311 (365)
34 3spa_A Mtrpol, DNA-directed RN 99.7 9.9E-17 3.4E-21 173.1 8.6 132 240-371 127-262 (1134)
35 4g1t_A Interferon-induced prot 99.6 2.9E-13 9.8E-18 144.0 32.3 382 208-622 50-471 (472)
36 3cv0_A Peroxisome targeting si 99.6 9.1E-14 3.1E-18 139.7 25.8 148 421-574 148-311 (327)
37 2pl2_A Hypothetical conserved 99.6 6.5E-14 2.2E-18 131.4 18.7 193 444-641 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.6 3.3E-13 1.1E-17 130.4 21.4 227 377-644 6-236 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.6E-13 1.9E-17 130.2 21.9 241 388-638 17-269 (275)
40 3uq3_A Heat shock protein STI1 99.5 3.9E-13 1.3E-17 129.8 19.9 232 345-622 5-254 (258)
41 2h6f_A Protein farnesyltransfe 99.5 2.1E-12 7E-17 131.3 23.4 244 377-628 98-366 (382)
42 3u4t_A TPR repeat-containing p 99.5 1.9E-12 6.5E-17 126.3 21.4 244 349-630 7-270 (272)
43 3e4b_A ALGK; tetratricopeptide 99.5 2E-12 6.9E-17 135.7 22.3 247 347-641 143-418 (452)
44 4e6h_A MRNA 3'-END-processing 99.5 3.6E-10 1.2E-14 122.5 40.3 217 394-616 327-576 (679)
45 2ho1_A Type 4 fimbrial biogene 99.5 4.1E-12 1.4E-16 122.3 22.0 195 447-643 37-237 (252)
46 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-11 4E-16 119.0 24.6 204 376-619 37-247 (252)
47 2pl2_A Hypothetical conserved 99.5 5.5E-12 1.9E-16 118.1 20.3 189 379-575 8-211 (217)
48 2vq2_A PILW, putative fimbrial 99.5 8.4E-12 2.9E-16 117.6 21.7 196 446-643 7-210 (225)
49 2h6f_A Protein farnesyltransfe 99.4 7.7E-12 2.6E-16 127.0 22.7 243 412-688 98-366 (382)
50 2vq2_A PILW, putative fimbrial 99.4 1.9E-11 6.6E-16 115.1 23.9 197 420-621 17-222 (225)
51 2q7f_A YRRB protein; TPR, prot 99.4 2.3E-12 7.9E-17 123.2 17.6 140 479-622 92-234 (243)
52 3e4b_A ALGK; tetratricopeptide 99.4 4.9E-11 1.7E-15 125.2 29.2 341 80-441 9-388 (452)
53 2q7f_A YRRB protein; TPR, prot 99.4 3.2E-12 1.1E-16 122.2 18.3 196 445-644 21-222 (243)
54 1ouv_A Conserved hypothetical 99.4 3.5E-11 1.2E-15 117.4 25.9 224 375-645 5-252 (273)
55 1ouv_A Conserved hypothetical 99.4 5.1E-11 1.8E-15 116.1 25.5 227 343-614 4-255 (273)
56 3u4t_A TPR repeat-containing p 99.4 4.6E-11 1.6E-15 116.3 24.0 240 312-591 5-265 (272)
57 3vtx_A MAMA; tetratricopeptide 99.4 2.6E-11 8.8E-16 110.3 20.7 163 477-644 4-170 (184)
58 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.2E-12 2.1E-16 122.7 17.2 242 49-298 17-269 (275)
59 4abn_A Tetratricopeptide repea 99.4 4E-12 1.4E-16 134.4 16.8 204 428-638 85-315 (474)
60 4a1s_A PINS, partner of inscut 99.4 1E-11 3.5E-16 129.3 19.6 259 384-643 56-371 (411)
61 3sf4_A G-protein-signaling mod 99.4 1.2E-11 4.2E-16 128.3 19.9 272 346-641 10-333 (406)
62 3sf4_A G-protein-signaling mod 99.4 3.9E-12 1.3E-16 132.1 14.9 296 309-633 8-365 (406)
63 3ro2_A PINS homolog, G-protein 99.4 1.2E-11 4.1E-16 124.4 18.0 260 384-644 13-332 (338)
64 4e6h_A MRNA 3'-END-processing 99.3 5E-09 1.7E-13 113.7 36.8 228 329-562 328-587 (679)
65 2ond_A Cleavage stimulation fa 99.3 6.7E-10 2.3E-14 110.2 26.2 219 393-617 33-277 (308)
66 4gyw_A UDP-N-acetylglucosamine 99.3 6.6E-11 2.3E-15 130.0 19.5 161 477-642 8-172 (723)
67 4a1s_A PINS, partner of inscut 99.3 4E-11 1.4E-15 124.8 17.0 262 352-613 55-375 (411)
68 3ro2_A PINS homolog, G-protein 99.3 8.9E-11 3E-15 118.0 17.3 265 317-613 12-335 (338)
69 3vtx_A MAMA; tetratricopeptide 99.3 2.3E-10 7.8E-15 103.9 17.9 166 446-615 4-175 (184)
70 4i17_A Hypothetical protein; T 99.3 1.5E-10 5.2E-15 109.3 17.1 186 446-643 6-208 (228)
71 2ond_A Cleavage stimulation fa 99.2 6.4E-10 2.2E-14 110.4 21.9 212 428-646 33-272 (308)
72 3nf1_A KLC 1, kinesin light ch 99.2 4.5E-11 1.5E-15 118.9 13.4 235 378-643 29-306 (311)
73 3as5_A MAMA; tetratricopeptide 99.2 4.8E-10 1.6E-14 101.7 18.5 161 480-644 10-173 (186)
74 3ulq_A Response regulator aspa 99.2 3.5E-10 1.2E-14 116.3 18.7 224 420-643 112-367 (383)
75 3ulq_A Response regulator aspa 99.2 7.9E-10 2.7E-14 113.7 21.4 230 383-612 110-370 (383)
76 4abn_A Tetratricopeptide repea 99.2 3.2E-10 1.1E-14 119.7 18.8 177 463-644 84-287 (474)
77 1hz4_A MALT regulatory protein 99.2 2.2E-08 7.5E-13 102.4 29.1 194 450-643 96-321 (373)
78 4i17_A Hypothetical protein; T 99.2 2E-09 7E-14 101.5 19.2 205 409-626 5-225 (228)
79 3nf1_A KLC 1, kinesin light ch 99.1 1.2E-10 4.2E-15 115.7 11.1 254 21-303 11-306 (311)
80 3q15_A PSP28, response regulat 99.1 3.1E-09 1E-13 109.0 21.3 222 421-642 111-363 (378)
81 3as5_A MAMA; tetratricopeptide 99.1 3.7E-09 1.3E-13 95.7 19.3 168 447-617 8-180 (186)
82 3q15_A PSP28, response regulat 99.1 3.5E-08 1.2E-12 101.1 27.4 227 383-610 108-365 (378)
83 3qky_A Outer membrane assembly 99.1 1.4E-08 4.8E-13 98.0 20.7 204 446-690 14-247 (261)
84 4gyw_A UDP-N-acetylglucosamine 99.0 3E-09 1E-13 116.9 16.2 166 443-613 5-177 (723)
85 1hz4_A MALT regulatory protein 99.0 1.9E-07 6.7E-12 95.2 28.5 58 246-303 20-81 (373)
86 3edt_B KLC 2, kinesin light ch 99.0 6.4E-09 2.2E-13 101.4 15.5 222 422-643 12-280 (283)
87 3mv2_B Coatomer subunit epsilo 98.9 2E-07 6.8E-12 89.6 23.4 173 466-643 85-281 (310)
88 4ga2_A E3 SUMO-protein ligase 98.9 2.4E-09 8.3E-14 93.2 9.0 141 485-630 4-149 (150)
89 2yhc_A BAMD, UPF0169 lipoprote 98.9 9E-08 3.1E-12 89.8 19.8 180 448-647 5-216 (225)
90 3qky_A Outer membrane assembly 98.9 2.5E-08 8.6E-13 96.2 16.2 203 409-634 13-251 (261)
91 1qqe_A Vesicular transport pro 98.9 1.3E-08 4.4E-13 100.0 14.1 187 454-640 44-265 (292)
92 1qqe_A Vesicular transport pro 98.9 1.9E-08 6.6E-13 98.7 15.4 175 360-575 32-225 (292)
93 4ga2_A E3 SUMO-protein ligase 98.9 7.3E-09 2.5E-13 90.1 10.8 121 519-642 3-127 (150)
94 2fo7_A Synthetic consensus TPR 98.9 4.1E-08 1.4E-12 83.2 15.3 120 521-643 9-131 (136)
95 3edt_B KLC 2, kinesin light ch 98.9 6.6E-08 2.2E-12 94.1 17.1 163 448-610 86-281 (283)
96 4gco_A Protein STI-1; structur 98.8 3.1E-08 1.1E-12 83.0 12.2 99 545-643 8-109 (126)
97 2fo7_A Synthetic consensus TPR 98.8 1.3E-07 4.6E-12 80.0 16.5 130 480-613 3-135 (136)
98 2pzi_A Probable serine/threoni 98.8 4.4E-08 1.5E-12 108.2 16.9 191 422-620 402-612 (681)
99 2uy1_A Cleavage stimulation fa 98.8 1.3E-05 4.5E-10 84.3 34.0 201 394-609 197-412 (493)
100 3mv2_B Coatomer subunit epsilo 98.8 3.7E-07 1.3E-11 87.7 20.0 239 356-617 24-289 (310)
101 2vgx_A Chaperone SYCD; alterna 98.8 2.8E-08 9.5E-13 86.1 10.8 101 544-644 15-118 (148)
102 3qou_A Protein YBBN; thioredox 98.8 1.1E-07 3.9E-12 92.8 16.4 174 463-641 102-281 (287)
103 3gyz_A Chaperone protein IPGC; 98.8 4.3E-08 1.5E-12 84.8 11.4 102 544-645 30-134 (151)
104 3rjv_A Putative SEL1 repeat pr 98.8 4.6E-07 1.6E-11 83.9 19.2 172 466-646 5-199 (212)
105 2pzi_A Probable serine/threoni 98.7 1.7E-07 5.8E-12 103.5 17.9 180 387-575 402-602 (681)
106 2vsy_A XCC0866; transferase, g 98.7 1.8E-07 6.1E-12 101.5 16.3 158 460-622 2-169 (568)
107 4gco_A Protein STI-1; structur 98.7 1.9E-07 6.4E-12 78.2 12.5 114 509-625 8-125 (126)
108 3urz_A Uncharacterized protein 98.7 2.5E-07 8.5E-12 85.5 14.3 127 482-614 58-190 (208)
109 3qou_A Protein YBBN; thioredox 98.7 5.3E-07 1.8E-11 88.0 17.5 131 511-644 115-248 (287)
110 2ifu_A Gamma-SNAP; membrane fu 98.7 2.8E-07 9.7E-12 91.0 15.4 221 388-637 3-254 (307)
111 2r5s_A Uncharacterized protein 98.7 1.8E-07 6.1E-12 83.9 12.7 75 568-642 93-171 (176)
112 2vsy_A XCC0866; transferase, g 98.7 4.2E-07 1.4E-11 98.6 18.0 146 424-575 2-154 (568)
113 2uy1_A Cleavage stimulation fa 98.7 2.6E-05 8.7E-10 82.1 30.8 80 154-235 28-115 (493)
114 2xcb_A PCRH, regulatory protei 98.7 2.7E-07 9.4E-12 79.2 12.9 101 544-644 12-115 (142)
115 3dra_A Protein farnesyltransfe 98.6 1.2E-05 4E-10 78.1 25.4 225 391-623 48-301 (306)
116 2yhc_A BAMD, UPF0169 lipoprote 98.6 5E-07 1.7E-11 84.7 15.0 187 411-618 4-221 (225)
117 2qfc_A PLCR protein; TPR, HTH, 98.6 2.1E-06 7.3E-11 84.1 18.9 163 480-642 77-264 (293)
118 2r5s_A Uncharacterized protein 98.6 5.4E-07 1.8E-11 80.7 13.1 155 450-609 9-172 (176)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1E-06 3.5E-11 81.6 15.5 128 479-613 7-153 (213)
120 3dra_A Protein farnesyltransfe 98.6 9.7E-06 3.3E-10 78.7 22.6 212 426-643 48-286 (306)
121 3u3w_A Transcriptional activat 98.6 2.9E-06 9.8E-11 83.1 19.3 160 483-642 80-264 (293)
122 3urz_A Uncharacterized protein 98.6 2.1E-06 7.2E-11 79.2 16.6 135 450-589 57-198 (208)
123 2e2e_A Formate-dependent nitri 98.5 8.1E-07 2.8E-11 79.6 13.0 118 524-644 21-144 (177)
124 3upv_A Heat shock protein STI1 98.5 7.9E-07 2.7E-11 74.4 12.0 119 549-687 4-124 (126)
125 1na0_A Designed protein CTPR3; 98.5 1.4E-06 4.9E-11 72.3 13.6 114 513-629 9-125 (125)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.7E-06 9.2E-11 78.7 16.7 131 449-580 8-153 (213)
127 1a17_A Serine/threonine protei 98.5 1.9E-06 6.6E-11 75.9 14.4 125 515-642 15-144 (166)
128 3rjv_A Putative SEL1 repeat pr 98.5 8E-06 2.7E-10 75.5 19.0 158 375-542 17-197 (212)
129 2vyi_A SGTA protein; chaperone 98.5 1.8E-06 6.2E-11 72.3 13.5 117 513-632 12-131 (131)
130 2lni_A Stress-induced-phosphop 98.5 1.8E-06 6.1E-11 72.7 12.9 115 513-630 16-133 (133)
131 1p5q_A FKBP52, FK506-binding p 98.4 1.4E-06 4.7E-11 87.1 13.1 158 461-641 127-291 (336)
132 2c2l_A CHIP, carboxy terminus 98.4 4.6E-07 1.6E-11 88.1 9.2 190 446-643 3-198 (281)
133 2ifu_A Gamma-SNAP; membrane fu 98.4 1.3E-06 4.6E-11 86.1 12.5 197 423-642 3-222 (307)
134 3u3w_A Transcriptional activat 98.4 3E-05 1E-09 75.8 21.7 159 452-610 80-266 (293)
135 4f3v_A ESX-1 secretion system 98.4 3.5E-06 1.2E-10 79.8 14.1 136 482-622 106-248 (282)
136 2qfc_A PLCR protein; TPR, HTH, 98.4 5.7E-06 2E-10 81.0 16.1 163 448-610 76-266 (293)
137 2kck_A TPR repeat; tetratricop 98.4 1.9E-06 6.6E-11 69.9 10.7 98 549-646 6-108 (112)
138 3sz7_A HSC70 cochaperone (SGT) 98.4 4.5E-06 1.5E-10 73.5 12.8 102 514-618 12-116 (164)
139 1elw_A TPR1-domain of HOP; HOP 98.3 7.4E-06 2.5E-10 67.0 13.2 93 550-642 5-99 (118)
140 2hr2_A Hypothetical protein; a 98.3 8.1E-07 2.8E-11 75.8 7.1 62 582-643 58-130 (159)
141 3q49_B STIP1 homology and U bo 98.3 7.2E-06 2.5E-10 69.5 13.2 97 548-644 8-106 (137)
142 1hxi_A PEX5, peroxisome target 98.3 1.9E-06 6.4E-11 71.4 9.1 94 551-644 19-114 (121)
143 2lni_A Stress-induced-phosphop 98.3 6.9E-06 2.3E-10 69.0 12.6 95 549-643 16-112 (133)
144 3rkv_A Putative peptidylprolyl 98.3 4.5E-06 1.5E-10 73.3 11.8 85 581-691 63-148 (162)
145 2vgx_A Chaperone SYCD; alterna 98.3 1.9E-06 6.6E-11 74.3 9.2 104 513-619 21-127 (148)
146 1na0_A Designed protein CTPR3; 98.3 1E-05 3.5E-10 66.9 13.5 95 549-643 9-105 (125)
147 3gw4_A Uncharacterized protein 98.3 1.2E-05 4E-10 73.6 14.8 128 515-642 28-174 (203)
148 3q7a_A Farnesyltransferase alp 98.3 0.00038 1.3E-08 68.3 25.7 227 385-619 63-341 (349)
149 2e2e_A Formate-dependent nitri 98.3 4.9E-06 1.7E-10 74.4 11.5 126 489-618 21-152 (177)
150 4f3v_A ESX-1 secretion system 98.3 4.6E-06 1.6E-10 79.0 11.5 180 460-644 19-237 (282)
151 1elw_A TPR1-domain of HOP; HOP 98.3 1.6E-05 5.5E-10 64.9 13.4 109 514-625 5-116 (118)
152 3gyz_A Chaperone protein IPGC; 98.3 8.1E-06 2.8E-10 70.3 11.7 97 515-614 38-137 (151)
153 2vyi_A SGTA protein; chaperone 98.3 1.4E-05 4.7E-10 66.8 13.0 95 549-643 12-108 (131)
154 2dba_A Smooth muscle cell asso 98.3 1.6E-05 5.4E-10 68.3 13.7 94 549-642 28-126 (148)
155 3gw4_A Uncharacterized protein 98.3 1.1E-05 3.6E-10 73.9 13.3 152 459-610 4-176 (203)
156 3sz7_A HSC70 cochaperone (SGT) 98.2 1.4E-05 4.9E-10 70.2 13.6 94 477-575 10-105 (164)
157 2xcb_A PCRH, regulatory protei 98.2 7.3E-06 2.5E-10 70.1 11.2 106 515-623 20-128 (142)
158 3upv_A Heat shock protein STI1 98.2 1.4E-05 4.8E-10 66.6 12.3 108 515-625 6-122 (126)
159 1wao_1 Serine/threonine protei 98.2 5.3E-06 1.8E-10 87.1 11.7 117 521-640 14-135 (477)
160 2fbn_A 70 kDa peptidylprolyl i 98.2 3.1E-06 1.1E-10 77.4 8.7 148 487-635 13-176 (198)
161 2fbn_A 70 kDa peptidylprolyl i 98.2 1.1E-05 3.9E-10 73.5 12.1 144 454-601 11-176 (198)
162 1a17_A Serine/threonine protei 98.2 4E-05 1.4E-09 67.2 15.0 128 479-610 14-146 (166)
163 2dba_A Smooth muscle cell asso 98.2 2.9E-05 9.8E-10 66.6 13.7 109 515-626 30-144 (148)
164 4gcn_A Protein STI-1; structur 98.2 9.6E-06 3.3E-10 67.7 10.1 94 550-643 9-111 (127)
165 3dss_A Geranylgeranyl transfer 98.1 0.00048 1.6E-08 67.2 22.6 192 427-625 90-319 (331)
166 3q7a_A Farnesyltransferase alp 98.1 0.00021 7.1E-09 70.1 19.9 212 426-643 69-330 (349)
167 3q49_B STIP1 homology and U bo 98.1 2.5E-05 8.5E-10 66.1 11.7 99 512-613 8-109 (137)
168 2xev_A YBGF; tetratricopeptide 98.1 1.2E-05 4E-10 67.3 9.3 90 554-643 7-104 (129)
169 1elr_A TPR2A-domain of HOP; HO 98.1 2.7E-05 9.1E-10 65.0 11.6 94 550-643 5-107 (131)
170 1p5q_A FKBP52, FK506-binding p 98.1 1.8E-05 6.2E-10 79.0 12.2 96 549-644 147-259 (336)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.7E-05 1.3E-09 80.3 14.3 161 459-642 246-413 (457)
172 4b4t_Q 26S proteasome regulato 98.1 4.4E-05 1.5E-09 79.4 14.7 163 480-642 57-243 (434)
173 3dss_A Geranylgeranyl transfer 98.0 0.00067 2.3E-08 66.2 21.3 177 463-643 90-303 (331)
174 1wao_1 Serine/threonine protei 98.0 3.9E-05 1.3E-09 80.5 12.9 119 450-573 9-134 (477)
175 2c2l_A CHIP, carboxy terminus 98.0 2.8E-05 9.5E-10 75.4 10.9 48 526-576 148-197 (281)
176 1ihg_A Cyclophilin 40; ppiase 98.0 4.2E-05 1.4E-09 77.2 12.2 137 479-637 224-363 (370)
177 1hxi_A PEX5, peroxisome target 98.0 5.1E-05 1.7E-09 62.6 10.5 95 517-614 21-118 (121)
178 2kck_A TPR repeat; tetratricop 98.0 8.6E-05 2.9E-09 59.8 11.8 98 515-615 8-111 (112)
179 3k9i_A BH0479 protein; putativ 98.0 7.8E-06 2.7E-10 67.2 5.2 82 562-643 3-89 (117)
180 1elr_A TPR2A-domain of HOP; HO 97.9 0.00011 3.6E-09 61.3 12.5 107 516-626 7-123 (131)
181 2xev_A YBGF; tetratricopeptide 97.9 0.00014 4.7E-09 60.6 12.7 98 521-621 10-116 (129)
182 4gcn_A Protein STI-1; structur 97.9 0.00012 4.3E-09 60.8 12.2 59 480-540 10-69 (127)
183 2if4_A ATFKBP42; FKBP-like, al 97.9 2.7E-05 9.3E-10 77.7 9.3 148 478-645 179-329 (338)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00013 4.5E-09 76.1 14.5 95 550-644 269-380 (457)
185 3ro3_A PINS homolog, G-protein 97.9 9.2E-05 3.1E-09 64.4 11.2 92 552-643 52-157 (164)
186 3n71_A Histone lysine methyltr 97.9 2.5E-05 8.5E-10 81.4 8.5 125 523-647 319-467 (490)
187 1ihg_A Cyclophilin 40; ppiase 97.9 7.4E-05 2.5E-09 75.4 11.6 64 580-643 272-335 (370)
188 1dce_A Protein (RAB geranylger 97.9 0.00073 2.5E-08 72.2 19.8 169 461-633 43-244 (567)
189 3rkv_A Putative peptidylprolyl 97.8 5.3E-05 1.8E-09 66.3 9.2 78 549-626 63-143 (162)
190 3k9i_A BH0479 protein; putativ 97.8 2.5E-05 8.5E-10 64.1 6.3 93 526-618 3-98 (117)
191 4b4t_Q 26S proteasome regulato 97.8 0.0003 1E-08 73.0 15.4 53 352-404 11-83 (434)
192 3ro3_A PINS homolog, G-protein 97.8 0.00013 4.5E-09 63.3 10.7 132 480-611 11-159 (164)
193 2hr2_A Hypothetical protein; a 97.8 8.5E-05 2.9E-09 63.3 8.8 69 551-619 59-140 (159)
194 2if4_A ATFKBP42; FKBP-like, al 97.7 0.0001 3.6E-09 73.4 10.5 151 447-615 179-333 (338)
195 2l6j_A TPR repeat-containing p 97.7 6.1E-05 2.1E-09 60.8 7.0 90 548-637 3-100 (111)
196 3ma5_A Tetratricopeptide repea 97.7 0.00015 5.1E-09 57.3 9.0 65 579-643 5-69 (100)
197 1na3_A Designed protein CTPR2; 97.7 0.00024 8.3E-09 54.6 9.3 81 549-629 9-91 (91)
198 3n71_A Histone lysine methyltr 97.6 0.00013 4.4E-09 76.0 8.4 115 557-689 317-449 (490)
199 2kat_A Uncharacterized protein 97.5 0.00021 7.1E-09 58.2 7.6 76 568-643 4-81 (115)
200 3bee_A Putative YFRE protein; 97.5 0.00093 3.2E-08 51.6 10.6 69 578-646 3-74 (93)
201 1zu2_A Mitochondrial import re 97.5 9E-05 3.1E-09 63.0 4.8 49 597-645 62-121 (158)
202 2l6j_A TPR repeat-containing p 97.4 0.00098 3.4E-08 53.4 10.5 66 579-644 2-67 (111)
203 3qwp_A SET and MYND domain-con 97.4 0.0005 1.7E-08 70.5 10.4 115 557-689 295-427 (429)
204 1na3_A Designed protein CTPR2; 97.4 0.0012 4.1E-08 50.5 9.8 64 580-643 8-71 (91)
205 1dce_A Protein (RAB geranylger 97.3 0.0064 2.2E-07 64.9 17.1 148 491-643 42-220 (567)
206 1zu2_A Mitochondrial import re 97.2 0.00054 1.8E-08 58.2 6.5 85 528-615 17-125 (158)
207 3lvg_A Clathrin heavy chain 1; 97.2 0.00018 6.1E-09 71.6 3.9 443 107-637 52-534 (624)
208 1klx_A Cysteine rich protein B 97.2 0.0038 1.3E-07 52.5 11.3 110 492-610 9-126 (138)
209 1klx_A Cysteine rich protein B 97.1 0.0032 1.1E-07 53.0 10.5 112 527-646 9-128 (138)
210 2kat_A Uncharacterized protein 97.1 0.0019 6.6E-08 52.2 8.7 65 549-613 19-85 (115)
211 3qww_A SET and MYND domain-con 97.1 0.00046 1.6E-08 70.6 5.8 83 582-682 341-431 (433)
212 2kc7_A BFR218_protein; tetratr 96.9 0.0031 1.1E-07 49.2 8.1 64 555-618 6-72 (99)
213 3ly7_A Transcriptional activat 96.9 0.019 6.5E-07 56.2 14.6 136 477-614 193-343 (372)
214 3lvg_A Clathrin heavy chain 1; 96.8 0.0019 6.4E-08 64.4 7.2 210 34-260 80-324 (624)
215 3ly7_A Transcriptional activat 96.7 0.016 5.5E-07 56.7 12.7 134 509-646 190-341 (372)
216 3qww_A SET and MYND domain-con 96.7 0.0076 2.6E-07 61.6 10.5 84 527-610 312-411 (433)
217 1pc2_A Mitochondria fission pr 96.7 0.011 3.8E-07 49.6 9.6 88 527-616 12-106 (152)
218 2kc7_A BFR218_protein; tetratr 96.6 0.011 3.8E-07 45.9 9.3 53 520-575 7-61 (99)
219 3ma5_A Tetratricopeptide repea 96.6 0.0083 2.8E-07 47.0 8.3 62 478-540 7-68 (100)
220 3qwp_A SET and MYND domain-con 96.2 0.029 9.9E-07 57.4 11.9 91 485-575 294-397 (429)
221 3mkq_A Coatomer beta'-subunit; 96.0 0.23 8E-06 55.8 19.1 100 355-472 662-761 (814)
222 3mkq_A Coatomer beta'-subunit; 96.0 0.25 8.6E-06 55.5 19.3 102 457-576 662-763 (814)
223 1pc2_A Mitochondria fission pr 96.0 0.029 1E-06 47.0 8.4 85 493-580 13-103 (152)
224 3u64_A Protein TP_0956; tetrat 95.8 0.032 1.1E-06 52.2 8.6 71 581-651 199-276 (301)
225 2v5f_A Prolyl 4-hydroxylase su 95.1 0.14 4.9E-06 40.1 9.4 69 553-621 9-86 (104)
226 3mkq_B Coatomer subunit alpha; 94.8 1.7 5.8E-05 37.4 15.7 127 456-606 14-140 (177)
227 3bee_A Putative YFRE protein; 94.8 0.22 7.7E-06 37.9 9.4 65 549-613 6-75 (93)
228 1nzn_A CGI-135 protein, fissio 94.8 0.11 3.8E-06 41.8 7.8 91 525-617 13-110 (126)
229 1wy6_A Hypothetical protein ST 94.8 1.3 4.5E-05 35.7 14.4 140 489-647 18-157 (172)
230 3mkq_B Coatomer subunit alpha; 94.7 1.9 6.5E-05 37.0 16.0 103 354-474 14-116 (177)
231 1nzn_A CGI-135 protein, fissio 94.6 0.4 1.4E-05 38.6 10.7 91 486-579 9-105 (126)
232 2v5f_A Prolyl 4-hydroxylase su 94.6 0.27 9.4E-06 38.4 9.9 64 580-643 4-74 (104)
233 1y8m_A FIS1; mitochondria, unk 94.2 1.5 5E-05 36.0 13.1 69 546-614 36-110 (144)
234 1qsa_A Protein (soluble lytic 93.8 8.1 0.00028 41.1 27.2 253 346-609 73-347 (618)
235 3u64_A Protein TP_0956; tetrat 93.6 0.69 2.4E-05 43.3 11.6 111 460-575 134-266 (301)
236 4h7y_A Dual specificity protei 92.5 0.75 2.6E-05 38.0 8.9 55 563-617 74-130 (161)
237 4gns_B Protein CSD3, chitin bi 92.3 0.59 2E-05 50.8 10.5 54 589-642 345-398 (754)
238 1wy6_A Hypothetical protein ST 91.5 4.7 0.00016 32.6 12.8 139 387-545 18-156 (172)
239 2wpv_A GET4, UPF0363 protein Y 91.2 10 0.00036 36.1 19.1 164 112-302 36-215 (312)
240 4ady_A RPN2, 26S proteasome re 90.9 23 0.00079 39.4 32.0 269 248-523 382-671 (963)
241 3o48_A Mitochondria fission 1 90.1 1.5 5E-05 35.5 8.2 70 546-615 37-112 (134)
242 3lpz_A GET4 (YOR164C homolog); 90.0 14 0.00048 35.5 20.6 166 112-303 38-215 (336)
243 4h7y_A Dual specificity protei 89.9 1.1 3.8E-05 37.0 7.4 53 594-646 73-125 (161)
244 3ffl_A Anaphase-promoting comp 87.2 3.8 0.00013 34.6 9.1 29 549-577 122-150 (167)
245 2p58_C Putative type III secre 87.0 6 0.00021 29.8 8.9 77 190-270 22-99 (116)
246 1y8m_A FIS1; mitochondria, unk 86.5 6.6 0.00023 32.1 9.9 43 600-642 61-104 (144)
247 2uwj_G Type III export protein 86.4 5.8 0.0002 29.8 8.5 77 190-270 21-98 (115)
248 3o48_A Mitochondria fission 1 86.3 1.7 5.7E-05 35.1 6.2 70 509-581 36-111 (134)
249 2wpv_A GET4, UPF0363 protein Y 86.0 24 0.00083 33.6 21.7 169 348-542 36-217 (312)
250 3lpz_A GET4 (YOR164C homolog); 85.4 27 0.00092 33.5 22.8 167 449-643 37-215 (336)
251 2qx5_A Nucleoporin NIC96; mRNA 85.1 21 0.00072 38.1 15.9 39 214-252 157-198 (661)
252 1v54_E Cytochrome C oxidase po 84.9 6.4 0.00022 29.9 8.2 63 493-557 25-87 (109)
253 2uwj_G Type III export protein 84.8 11 0.00036 28.4 9.4 85 326-415 22-106 (115)
254 4gns_B Protein CSD3, chitin bi 84.6 11 0.00036 41.1 13.5 53 319-372 346-398 (754)
255 2p58_C Putative type III secre 84.4 11 0.00038 28.4 10.2 85 326-415 23-107 (116)
256 1v54_E Cytochrome C oxidase po 83.1 6.8 0.00023 29.7 7.7 49 574-622 38-86 (109)
257 4fhn_B Nucleoporin NUP120; pro 82.4 22 0.00076 41.3 16.2 143 416-567 817-989 (1139)
258 4b4t_P 26S proteasome regulato 82.3 45 0.0015 33.8 22.6 95 481-575 140-244 (445)
259 2ff4_A Probable regulatory pro 81.5 9.4 0.00032 38.1 11.1 72 481-553 174-249 (388)
260 3ffl_A Anaphase-promoting comp 80.7 5.5 0.00019 33.6 7.4 121 507-641 12-148 (167)
261 2ff4_A Probable regulatory pro 80.5 4.2 0.00014 40.6 8.1 58 585-642 175-232 (388)
262 4fhn_B Nucleoporin NUP120; pro 79.0 66 0.0023 37.3 18.6 139 181-325 818-986 (1139)
263 4ady_A RPN2, 26S proteasome re 78.7 88 0.003 34.9 36.5 218 354-575 383-620 (963)
264 2y69_E Cytochrome C oxidase su 78.2 16 0.00055 29.4 8.8 62 494-557 69-130 (152)
265 1zbp_A Hypothetical protein VP 76.7 40 0.0014 31.0 12.4 124 487-617 6-136 (273)
266 1qsa_A Protein (soluble lytic 76.5 83 0.0028 33.4 37.2 458 37-550 7-486 (618)
267 4b4t_P 26S proteasome regulato 73.8 80 0.0027 31.9 23.3 58 279-336 141-203 (445)
268 2y69_E Cytochrome C oxidase su 71.7 19 0.00066 28.9 7.7 55 568-622 75-129 (152)
269 1zbp_A Hypothetical protein VP 69.2 7.9 0.00027 35.7 6.0 58 557-614 5-64 (273)
270 3eiq_C Programmed cell death p 68.7 37 0.0013 33.0 11.0 65 450-514 220-289 (358)
271 2pk8_A Uncharacterized protein 67.8 5.5 0.00019 29.1 3.6 38 673-710 14-58 (103)
272 1wdy_A 2-5A-dependent ribonucl 64.9 85 0.0029 28.7 14.3 75 218-293 154-234 (285)
273 1n11_A Ankyrin; clathrin, BAND 62.5 76 0.0026 31.8 12.9 108 47-163 21-133 (437)
274 2zu6_B Programmed cell death p 60.1 1.2E+02 0.004 28.8 13.7 66 348-413 169-239 (307)
275 4b4t_R RPN7, 26S proteasome re 59.7 30 0.001 34.9 9.0 97 448-544 132-239 (429)
276 2qx5_A Nucleoporin NIC96; mRNA 58.7 1.4E+02 0.0047 32.0 13.9 81 280-371 299-382 (661)
277 1wdy_A 2-5A-dependent ribonucl 58.2 87 0.003 28.7 11.7 58 113-174 6-66 (285)
278 3kea_A K1L; tropism, ANK repea 57.4 1.2E+02 0.0041 28.1 13.9 92 216-312 133-225 (285)
279 3eu9_A Huntingtin-interacting 55.3 62 0.0021 28.7 9.8 40 95-134 56-98 (240)
280 3ltm_A Alpha-REP4; protein eng 53.3 1.1E+02 0.0039 26.5 20.0 80 445-528 93-172 (211)
281 4b4t_R RPN7, 26S proteasome re 53.0 33 0.0011 34.6 7.9 63 39-101 133-195 (429)
282 3esl_A Checkpoint serine/threo 51.2 99 0.0034 27.0 9.4 45 529-574 95-140 (202)
283 3hra_A Ankyrin repeat family p 50.9 95 0.0032 26.6 10.0 15 120-134 13-27 (201)
284 3esl_A Checkpoint serine/threo 49.7 82 0.0028 27.5 8.6 59 427-485 95-153 (202)
285 3mv2_A Coatomer subunit alpha; 49.0 1.4E+02 0.0048 28.3 10.7 58 572-643 196-255 (325)
286 3eu9_A Huntingtin-interacting 46.5 1.3E+02 0.0045 26.5 10.5 81 86-175 18-104 (240)
287 2ion_A PDCD4, programmed cell 46.2 94 0.0032 25.8 8.3 66 348-413 12-82 (152)
288 3txn_A 26S proteasome regulato 46.1 2.3E+02 0.0078 27.9 23.7 289 209-508 19-344 (394)
289 2nsz_A Programmed cell death p 45.0 69 0.0023 25.7 7.1 63 450-512 10-77 (129)
290 2nsz_A Programmed cell death p 45.0 1.2E+02 0.004 24.3 10.1 66 348-413 10-80 (129)
291 4a1g_A Mitotic checkpoint seri 39.9 1.3E+02 0.0043 25.0 7.9 13 492-504 115-127 (152)
292 2zu6_B Programmed cell death p 38.7 2.6E+02 0.0088 26.4 12.5 196 349-548 7-236 (307)
293 1k1a_A B-cell lymphoma 3-encod 38.7 2E+02 0.007 25.2 11.9 14 120-133 54-67 (241)
294 1k1a_A B-cell lymphoma 3-encod 38.4 2.1E+02 0.007 25.2 11.8 89 44-136 13-103 (241)
295 3ltj_A Alpharep-4; protein eng 37.3 2E+02 0.0067 24.6 20.4 110 445-563 88-197 (201)
296 2ion_A PDCD4, programmed cell 37.0 62 0.0021 26.9 5.7 62 450-511 12-78 (152)
297 2d2s_A Exocyst complex compone 36.8 98 0.0034 27.9 7.5 23 146-168 24-46 (235)
298 3ltm_A Alpha-REP4; protein eng 35.0 2.2E+02 0.0075 24.5 19.9 162 350-524 38-199 (211)
299 2d2s_A Exocyst complex compone 34.5 1.1E+02 0.0038 27.6 7.5 88 484-575 24-117 (235)
300 2r9g_A AAA ATPase, central reg 34.4 2.3E+02 0.0079 24.6 10.0 59 382-441 17-83 (204)
301 4a1g_A Mitotic checkpoint seri 34.3 2E+02 0.0068 23.8 8.4 50 497-547 84-134 (152)
302 3jxi_A Vanilloid receptor-rela 34.0 61 0.0021 29.5 6.0 54 147-200 9-71 (260)
303 4b4t_S RPN3, 26S proteasome re 33.9 4E+02 0.014 27.3 12.5 61 447-507 231-299 (523)
304 3kea_A K1L; tropism, ANK repea 33.6 1.7E+02 0.0059 27.0 9.3 17 261-277 209-225 (285)
305 1ug3_A EIF4GI, eukaryotic prot 33.4 3.2E+02 0.011 26.2 11.2 63 349-411 15-81 (339)
306 3eiq_C Programmed cell death p 31.7 3.6E+02 0.012 26.0 21.2 74 348-421 220-298 (358)
307 3ygs_P Procaspase 9; apoptosis 31.4 51 0.0017 24.8 4.0 38 123-160 51-88 (97)
308 3hra_A Ankyrin repeat family p 31.0 1.7E+02 0.0058 24.9 8.3 18 116-133 76-93 (201)
309 2wvi_A Mitotic checkpoint seri 30.2 2.4E+02 0.0083 23.6 8.7 47 600-646 79-127 (164)
310 3ctd_A Putative ATPase, AAA fa 28.9 3E+02 0.01 24.2 9.2 46 381-426 37-85 (213)
311 3jxi_A Vanilloid receptor-rela 28.5 3.2E+02 0.011 24.4 10.4 94 44-137 9-118 (260)
312 1n11_A Ankyrin; clathrin, BAND 28.0 4.3E+02 0.015 26.0 11.8 173 47-235 54-235 (437)
313 3b7b_A Euchromatic histone-lys 28.0 3E+02 0.01 24.0 10.5 20 115-134 47-66 (237)
314 3t8k_A Uncharacterized protein 27.7 2.8E+02 0.0096 23.5 9.1 91 220-310 14-109 (186)
315 3re2_A Predicted protein; meni 27.6 3.6E+02 0.012 25.9 9.5 51 614-685 295-346 (472)
316 3u84_A Menin; MLL, JUND, ledgf 27.5 3.5E+02 0.012 26.6 9.5 51 614-685 317-368 (550)
317 3bge_A Predicted ATPase; struc 26.6 3.2E+02 0.011 23.7 8.9 45 382-426 10-57 (201)
318 3ygs_P Procaspase 9; apoptosis 26.5 91 0.0031 23.4 4.7 38 359-396 51-88 (97)
319 2fe3_A Peroxide operon regulat 26.3 1.7E+02 0.006 23.8 6.8 67 257-324 4-70 (145)
320 3ltj_A Alpharep-4; protein eng 26.2 3E+02 0.01 23.4 21.1 136 448-593 60-195 (201)
321 4gq2_M Nucleoporin NUP120; bet 25.2 5.1E+02 0.017 29.2 12.5 86 519-610 816-926 (950)
322 4b4t_S RPN3, 26S proteasome re 24.7 1.8E+02 0.0062 29.8 7.7 63 513-575 231-296 (523)
323 3ljn_A Hypothetical protein; a 23.5 3.3E+02 0.011 25.9 9.7 49 117-165 58-106 (364)
324 2xig_A Ferric uptake regulatio 23.5 1.8E+02 0.0061 23.9 6.4 59 265-324 17-75 (150)
325 3cqc_A Nuclear pore complex pr 23.1 4.4E+02 0.015 24.2 9.6 28 211-238 36-63 (270)
326 3i5p_A Nucleoporin NUP170; hel 23.1 6E+02 0.02 26.1 11.3 67 578-644 175-246 (525)
327 1mzb_A Ferric uptake regulatio 22.7 1.6E+02 0.0056 23.6 5.9 58 266-324 9-67 (136)
328 2wvi_A Mitotic checkpoint seri 22.6 1.6E+02 0.0055 24.7 5.8 18 491-508 109-126 (164)
329 3ljn_A Hypothetical protein; a 21.6 3.9E+02 0.013 25.4 9.7 81 220-305 28-111 (364)
330 3b7b_A Euchromatic histone-lys 21.6 2E+02 0.0067 25.3 7.0 116 46-175 17-139 (237)
331 4aez_C MAD3, mitotic spindle c 21.1 3.1E+02 0.011 24.3 7.6 81 565-648 100-183 (223)
332 3eyy_A Putative iron uptake re 21.1 1.5E+02 0.005 24.3 5.3 58 265-324 9-66 (145)
333 2b7e_A PRE-mRNA processing pro 20.8 1.1E+02 0.0036 20.6 3.4 28 257-285 3-31 (59)
334 1bpo_A Protein (clathrin); cla 20.4 6.7E+02 0.023 25.3 13.3 75 336-411 352-429 (494)
335 1wgl_A TOLL-interacting protei 20.2 1.7E+02 0.0057 19.6 4.4 23 287-309 35-57 (59)
336 3omy_A Protein TRAM; DNA bindi 20.0 1.2E+02 0.004 19.6 3.2 35 675-710 10-44 (52)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-40 Score=367.53 Aligned_cols=500 Identities=11% Similarity=-0.024 Sum_probs=366.9
Q ss_pred HHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHH
Q 005174 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198 (710)
Q Consensus 119 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 198 (710)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677888888899988888999999999999999999999999999985 5678888999999999999999999998
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH
Q 005174 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278 (710)
Q Consensus 199 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 278 (710)
+.+. ..+++..+++.++.+|.++|++++|.++|+++...+.. ..++.+.+. ...|..++..+|
T Consensus 141 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~-----------~~~~~~~~~~~~ 203 (597)
T 2xpi_A 141 TKED-LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLM-----------QDGGIKLEASMC 203 (597)
T ss_dssp HHTC-GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHHHHH
T ss_pred HHHh-ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----ccccccccc-----------cccccchhHHHH
Confidence 8765 23678889999999999999999999999964332200 000000000 112233444555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccCCh--HHHHHH-HHHHHhhcCCCchhHHHHHHHH
Q 005174 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV-ATVIGLGACSHVGAL--KLGKEI-HGSAVRGCYGEYENVRNALITM 354 (710)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~~l~~~~~~~~~--~~a~~i-~~~~~~~~~~~~~~~~~~li~~ 354 (710)
+.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+...+...+.. +....+ +..+...+......+++.++..
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 555555555555555555555555432 2222 222222222111111 111111 3344444445555667777888
Q ss_pred HHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHH
Q 005174 355 YSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432 (710)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 432 (710)
|.+.|++++|.++|+++.+ +++.+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|++++|..
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence 8899999999999998877 688889999999999999999999999988765 3366778888888899999999999
Q ss_pred HHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
++..+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+
T Consensus 361 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 361 ISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999888664 6678888999999999999999999998775 3467789999999999999999999999988753
Q ss_pred CCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-
Q 005174 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKM-------PYTPT- 580 (710)
Q Consensus 510 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~- 580 (710)
+.+..+|..++.+|.+.|++++|.++|+++.+. .| +..+|+.++.+|.+.|++++|.++|+++ +..|+
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 347788888999999999999999999998865 34 4788999999999999999999999887 34676
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 581 -SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 581 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..+|..++.+|...|+++.|...++++++++|+++..|..++.+|.+.|++++|.+.++++.+...
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 788999999999999999999999999999999999999999999999999999999988876543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-39 Score=357.70 Aligned_cols=459 Identities=10% Similarity=-0.021 Sum_probs=341.7
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHH
Q 005174 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232 (710)
Q Consensus 153 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (710)
.|.+..+...+..+. .++...|+.++..|.+.|+++.|..+++.+. +..|+..++..++.+|.+.|++++|..+|
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVL-DITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHH-hhCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 344444444444332 2355566666666666666666666666665 22234455666666666666666666666
Q ss_pred hhc--CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 005174 233 DKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310 (710)
Q Consensus 233 ~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 310 (710)
+.+ ..++..+|+.++.+|.+.|++++|.++|+++ .|+.. ...++.+.++ ...+..++.
T Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~~~~~-----------~~~~~~~~~ 200 (597)
T 2xpi_A 141 TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET-----NPFRK----DEKNANKLLM-----------QDGGIKLEA 200 (597)
T ss_dssp HHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS-----CTTC--------------C-----------CCSSCCHHH
T ss_pred HHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhcc-----CCccc----cccccccccc-----------cccccchhH
Confidence 666 3346666666666666666666666666532 11110 0000101000 123455678
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHH--H-HHhcCCC----ChhHHHHHH
Q 005174 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI--L-FKMTAEK----SIITWNSML 383 (710)
Q Consensus 311 ~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~----~~~~~~~li 383 (710)
.++..+..++.+.|++++|...++.+.+.+ +.+...+..+...+...+..+.+.. + |..+... ....|+.++
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 899999999999999999999999999875 3455566667666654443332221 1 3333332 335677778
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCCh
Q 005174 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463 (710)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 463 (710)
..|.+.|++++|..+|+++.+. .++..++..++.++.+.|++++|..+++.+.+.+ +.+..+++.++.+|.+.|++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCH
Confidence 8999999999999999999876 5899999999999999999999999999999886 55788899999999999999
Q ss_pred hHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 464 PEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 464 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
++|..+|+++.+ .+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|.++|+++.
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998863 478899999999999999999999999998742 2357799999999999999999999999998
Q ss_pred HHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh------C
Q 005174 541 SIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET------R 611 (710)
Q Consensus 541 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 611 (710)
+. .| +..+|..++.+|.+.|++++|.++|+++. .+.+..+|+.++..|...|++++|.+.++.+.++ +
T Consensus 435 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 435 RL---FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HT---TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred Hh---CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 64 45 58899999999999999999999999983 3457899999999999999999999999999988 5
Q ss_pred CCC-CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 612 PEN-SGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 612 p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
|++ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 554 6789999999999999999999999988755
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.5e-25 Score=226.60 Aligned_cols=370 Identities=11% Similarity=0.039 Sum_probs=258.2
Q ss_pred HHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHH
Q 005174 217 SMYGKFGQVDVARRLFDKML--ER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293 (710)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 293 (710)
..+.+.|++++|...|+.+. .| +...+..+...+.+.|++++|...++...+. .+.+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHH
Confidence 34555666777766666652 22 3445555556666667777777666666553 23345566666667777777777
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 005174 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373 (710)
Q Consensus 294 a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (710)
|+..|+++.... |+. ...+..+..+|.+.|++++|...|+++.+
T Consensus 86 A~~~~~~al~~~--p~~----------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHALRLK--PDF----------------------------------IDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHC--TTC----------------------------------HHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--cch----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777766665532 221 12233344444444444444444443321
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHH
Q 005174 374 ---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 374 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
.+...+..+...+...|++++|...|+++.+.. +-+..++..+...+...|+++.|...++.+++.. +.+...+
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 206 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAY 206 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHH
Confidence 122344455555555566666666666555542 2234555555556666666666666666666653 4556677
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhcc
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHS 526 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 526 (710)
..+...+...|++++|...|++.. ..+..+|..+...|...|++++|+..|+++.+. .| +..++..+...+.+.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Confidence 788888888888888888888664 236778899999999999999999999999985 34 466888999999999
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 005174 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAA 604 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 604 (710)
|++++|...|+++.+. ...+...+..+..++.+.|++++|.+.++++. ..| +..+|..+..++...|++++|...+
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999875 23348889999999999999999999999873 334 6788999999999999999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 605 EKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 605 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
+++++++|+++..|..++.+|...|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.6e-27 Score=251.24 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=152.6
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCC---------chHHHHHHHHHH-hcCCChHHH
Q 005174 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD---------VDFGRVVHSCID-ACHEWSLFV 211 (710)
Q Consensus 142 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~-~g~~~~~~~ 211 (710)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|+..+. ++.|..+++.|. .|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4788899999999999999999999999999999999999999987654 466788888888 888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhc----CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHh
Q 005174 212 HNALVSMYGKFGQVDVARRLFDKM----LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287 (710)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 287 (710)
||+||.+|++.|++++|.++|++| ..||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 888888888888888888888888 3468888888888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 005174 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322 (710)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~ 322 (710)
.|++++|.++|++|++.|..|+..||+.++..+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888777776654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.1e-24 Score=226.08 Aligned_cols=368 Identities=11% Similarity=0.083 Sum_probs=299.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCc-eehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCCh
Q 005174 248 SAYASKGLWKEAFQLFVEMQEEGVEVN-VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326 (710)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~ 326 (710)
..+.+.|++++|.+.+.++.+. .|+ ...+..+...+.+.|++++|..+++...
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~------------------------ 60 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI------------------------ 60 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------
Confidence 3445566666666666665543 222 2334444445555555555555555443
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMF 403 (710)
Q Consensus 327 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 403 (710)
+.. +.+...+..+...|.+.|++++|...|+++.. .+..+|..+..++.+.|++++|+..|+++.
T Consensus 61 -----------~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 61 -----------KQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp -----------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred -----------hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 322 45566788899999999999999999987653 356689999999999999999999999999
Q ss_pred HcCCCCc-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--C-Chh
Q 005174 404 RSGVEPN-YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DEV 479 (710)
Q Consensus 404 ~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~ 479 (710)
+.. |+ ...+..+...+...|++++|...+..+++.. +.+..+++.+...|.+.|++++|...|+++.+ | +..
T Consensus 129 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 204 (388)
T 1w3b_A 129 QYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204 (388)
T ss_dssp HHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 864 54 4456667778888999999999999999875 66788999999999999999999999998863 3 567
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
.|..+...+...|++++|+..|++..+. .| +..++..+...+...|++++|...|+++.+ +.|+ ...|..+..
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHH
Confidence 8999999999999999999999999874 45 467888999999999999999999999986 4676 788999999
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 005174 558 LYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 635 (710)
+|.+.|++++|.+.++++. .+++..+|..+...+...|+++.|...+++++++.|+++..|..++.+|.+.|++++|.
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999883 34578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHH
Q 005174 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688 (710)
Q Consensus 636 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~ 688 (710)
+.++++.+ .+|....++..+..+..+|
T Consensus 360 ~~~~~a~~--------------------------~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 360 MHYKEAIR--------------------------ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHT--------------------------TCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh--------------------------hCCCCHHHHHhHHHHHHHc
Confidence 99998874 3455667777777665544
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.4e-26 Score=244.21 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHhCCCCCCcc-cHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCC---------H
Q 005174 157 AEALCVYKQMQSRRIRGDNF-TYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQ---------V 225 (710)
Q Consensus 157 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~---------~ 225 (710)
..+..+.+++++.++.+.+. .++.+|.+|++.|++++|..+++.|. .|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34556677777777765543 57888888888888888888888888 8888888888888888887654 5
Q ss_pred HHHHHHHhhc----CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 226 DVARRLFDKM----LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301 (710)
Q Consensus 226 ~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (710)
+.|.++|++| ..||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 6677777766 346777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 005174 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357 (710)
Q Consensus 302 ~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 357 (710)
.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|..|+..+|+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777766666666666666554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.4e-22 Score=214.86 Aligned_cols=425 Identities=12% Similarity=-0.018 Sum_probs=301.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHh
Q 005174 210 FVHNALVSMYGKFGQVDVARRLFDKML--ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287 (710)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 287 (710)
..+..+...+.+.|++++|...|+++. .|+...|..+..++.+.|++++|...|+++.+.+ +.+..+|..+..++.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 445566677778888888888888773 3677778888888888888888888888877653 2345677778888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHH---HHHHHHhcCCHHHH
Q 005174 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA---LITMYSRCKDLRHA 364 (710)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A 364 (710)
.|++++|+..|+++...+. ++.......+..+........+.+.+..+...+..++...... .............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 8888888888888777653 2333333333333222222222222211111111010000000 00000111111111
Q ss_pred HHHHHhcCC---------C-ChhHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCC--------CcHHHHHHHH
Q 005174 365 YILFKMTAE---------K-SIITWNSMLSGYTH---LDCAEESAFLFREMFR-----SGVE--------PNYVTIASIL 418 (710)
Q Consensus 365 ~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~t~~~ll 418 (710)
...+..... + +...+......+.. .|++++|+..|+++.. .... .+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 112211111 1 23444444444444 8999999999999987 3112 2345677777
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChH
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGR 495 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 495 (710)
..+...|+++.|...+..+.+.. +. ...+..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999876 22 88899999999999999999999998764 36778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 574 (710)
+|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .|+ ...+..+...|.+.|++++|.+.+++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999853 235678888999999999999999999999875 454 77899999999999999999999988
Q ss_pred C----CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 575 M----PYTPT----SAMWATLLGACQI---HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 575 m----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+ +..++ ...|..+...+.. .|+++.|...++.++++.|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7 22233 4488889999999 99999999999999999999999999999999999999999999998875
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.5e-21 Score=208.99 Aligned_cols=272 Identities=9% Similarity=-0.060 Sum_probs=224.2
Q ss_pred hhHHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 345 ENVRNALITMYSR---CKDLRHAYILFKMTAE----------------K-SIITWNSMLSGYTHLDCAEESAFLFREMFR 404 (710)
Q Consensus 345 ~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 404 (710)
...+..+...+.. .|++++|...|+++.+ + +...|..+...+...|++++|...|+++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334444444443 7888888888876544 1 345788888999999999999999999988
Q ss_pred cCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHH
Q 005174 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTY 481 (710)
Q Consensus 405 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 481 (710)
.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|
T Consensus 266 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 266 LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence 75 337788888889999999999999999998875 56778899999999999999999999998752 367789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVD 557 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 557 (710)
..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.....-.|+ ...+..+..
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 999999999999999999999998752 335678888899999999999999999999875322232 338999999
Q ss_pred HHHh---cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 558 LYGR---AGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 558 ~~~~---~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
.|.+ .|++++|.+.++++. .+.+..+|..+...+...|+++.|...++++++++|+++..+..+
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999 999999999999872 234678888999999999999999999999999999987776655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=5.2e-21 Score=202.71 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=155.0
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 497 (710)
+...|+++.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333455555555555555442 45666777777888888888888888877653 4677888888888888999999
Q ss_pred HHHHHHHHHCCCCCChH-HHHHH------------HHHhhccCcHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHH
Q 005174 498 LKLFEEMNKNQIKPDHV-TMVAV------------LSACSHSGLVVEGQKQFERMTSIYGIFPQ-----LEHFACMVDLY 559 (710)
Q Consensus 498 ~~~~~~m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~ 559 (710)
+..|+++.+. .|+.. .+..+ ...|.+.|++++|..+|+.+... .|+ ..++..++.+|
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 9998888863 45433 33333 67889999999999999999875 565 45789999999
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005174 560 GRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 624 (710)
.+.|++++|++.++++. .+.+...|..+..+|...|+++.|...++++++++|+++..+..++.+
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999999873 334788999999999999999999999999999999999999999943
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=3.6e-20 Score=201.11 Aligned_cols=421 Identities=11% Similarity=0.012 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHH
Q 005174 210 FVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286 (710)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 286 (710)
..+..+...+.+.|++++|...|+++.+ .+...|..+..+|.+.|++++|++.|+++.+.+ +.+..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 4455566666667777777777766632 355666666777777777777777777766543 224556666666777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHhcCCHHHH
Q 005174 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY--GEYENVRNALITMYSRCKDLRHA 364 (710)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 364 (710)
..|++++|+..|+.+. . .|+.. ...+..+...+....+...+..++.... ..........+..|....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-L--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHh-c--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 7777777777775322 1 11111 1112233333344555555555543210 00000113334445566666666
Q ss_pred HHHHHhcCCCChh---HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCc--------HHHHHHHHHHHhccC
Q 005174 365 YILFKMTAEKSII---TWNSMLSGYTHL--------DCAEESAFLFREMFRSGVEPN--------YVTIASILPLCARVA 425 (710)
Q Consensus 365 ~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~ 425 (710)
...+......+.. .+..+...+... |++++|+.+|+++.+.. |+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence 6666655544332 333333332222 47888888888887653 33 224555566777888
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFE 502 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (710)
+++.|...+..+.+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|+
T Consensus 258 ~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8899999999888864 3477888888899999999999999987653 367788899999999999999999999
Q ss_pred HHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----
Q 005174 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP----- 576 (710)
Q Consensus 503 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 576 (710)
++.+.. +.+...+..+...+...|++++|..+++++.+. .|+ ...+..+...|.+.|++++|.+.++++.
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 988753 224667888888899999999999999998875 455 7788889999999999999999998761
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 577 ---YTPTSAMWATLLGACQIH----------RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 577 ---~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.......+..+...+... |+++.|...++++++.+|+++..+..++.+|.+.|++++|.+.++....
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111223344455667777 9999999999999999999999999999999999999999999988876
Q ss_pred CC
Q 005174 644 LG 645 (710)
Q Consensus 644 ~~ 645 (710)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=7.3e-20 Score=193.85 Aligned_cols=295 Identities=11% Similarity=0.033 Sum_probs=233.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005174 343 EYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419 (710)
Q Consensus 343 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 419 (710)
.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+..+|...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 3445566667777777777777777766542 355667777777777777777777777777654 334556666667
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCCch---HHHhHH------------hhhhhhcCChhHHHHHHhhcCC---CChhHH
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNEHL---LLWNSL------------VEMYARSGKVPEAKSVFDLMSR---RDEVTY 481 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 481 (710)
.+...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+++.+ .+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 7777777777777777776643 3333 444444 4458899999999999998763 477889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHH-----
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACM----- 555 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l----- 555 (710)
..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++... .|+ ...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHH
Confidence 999999999999999999999998752 346788999999999999999999999999864 666 4555554
Q ss_pred -------HHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 556 -------VDLYGRAGLLNKAKEIITKMP-YTPT-----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 556 -------i~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
+..|.+.|++++|.+.|+++- ..|+ ...|..+...+...|+++.|...++.++++.|+++..|..++
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 889999999999999999882 3344 447888889999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 005174 623 NMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+|...|++++|.+.++...+.
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999998763
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.5e-19 Score=196.14 Aligned_cols=435 Identities=11% Similarity=-0.023 Sum_probs=291.8
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005174 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGK 221 (710)
Q Consensus 142 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~ 221 (710)
.|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+..-.+.+...+..+..+|..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 35666777778888888888888877642 12444566666666666666666666666663344556666677777777
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCceehHHHHHHHHHhcCChHHHHHHHH
Q 005174 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG--VEVNVITWNTIAGGCLRTGNFKGVLELLS 299 (710)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (710)
.|++++|...|+.+ ..+....+..+..+...+...+|...++++.... ..+........+..+....+.+.+...+.
T Consensus 106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 77777777777543 2222222233444444555566666666664321 01111112223333444444444333322
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--------hcCCHHHHHHHHHhc
Q 005174 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS--------RCKDLRHAYILFKMT 371 (710)
Q Consensus 300 ~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~--------~~g~~~~A~~~~~~~ 371 (710)
..... .+.... ....+...+. ..|++++|..+|+.+
T Consensus 185 ~~~~~--~~~~~~----------------------------------~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 185 TSSNY--DTAYAL----------------------------------LSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp CCCSS--CSSHHH----------------------------------HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc--ccHHHH----------------------------------HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22111 111111 1122222221 124677777777766
Q ss_pred CCCC----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhC
Q 005174 372 AEKS----------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441 (710)
Q Consensus 372 ~~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 441 (710)
.+.+ ..+|..+...+...|++++|+..|++.... .|+...+..+...+...|+++.|...+..+.+..
T Consensus 229 l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp HC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 5432 224666777888899999999999999886 4667788888889999999999999999999875
Q ss_pred CCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 005174 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518 (710)
Q Consensus 442 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 518 (710)
+.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..
T Consensus 307 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 307 --PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTF 383 (537)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 66788899999999999999999999998763 367789999999999999999999999998853 334668888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHHhCC--CCCCHH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRA----------GLLNKAKEIITKMP--YTPTSA 582 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~--~~p~~~ 582 (710)
+...+...|++++|...++++.+...-.++ ...+..+..+|.+. |++++|...+++.. .+.+..
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 899999999999999999998765311121 22345556778888 99999999999873 334678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
.|..+...+...|+++.|...+++++++.|++.....
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 8999999999999999999999999999998766543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.6e-17 Score=169.73 Aligned_cols=308 Identities=12% Similarity=0.044 Sum_probs=201.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 005174 350 ALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426 (710)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 426 (710)
.+...+...|++++|...|+.+.+ .+...|..+...+...|++++|+..|+++.+.. +-+...+..+...+...|+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 333344444444444444443321 123344444444444444444444444444332 1123334444444444444
Q ss_pred hHHHHHHHHHHHHhCCCC---CchHHHhH------------HhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMFN---EHLLLWNS------------LVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGY 488 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~---~~~~~~~~------------li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 488 (710)
++.|...+..+.+.. + .+...+.. +...+...|++++|...|+++.+ .+...|..+...|
T Consensus 87 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp HHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 444444444444432 1 12222222 25677778888888888887652 3667788888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHH------------HH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFA------------CM 555 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l 555 (710)
...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .|+ ...+. .+
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887752 335667777888888888888888888888764 454 33332 33
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 556 VDLYGRAGLLNKAKEIITKMP-YTPT-S----AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~-~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
...+.+.|++++|.+.++++. ..|+ . ..+..+...+...|+++.|...++.+++.+|+++..|..++.+|...|
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 677889999999999998872 2333 3 234456788899999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHH
Q 005174 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690 (710)
Q Consensus 630 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 690 (710)
++++|.+.++...+ .+|+...++..|.++...+++
T Consensus 321 ~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 321 MYDEAIQDYEAAQE--------------------------HNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp CHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHHHHHHHHH
Confidence 99999999988774 456667777778777776654
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=6.6e-15 Score=164.04 Aligned_cols=543 Identities=11% Similarity=0.035 Sum_probs=310.2
Q ss_pred cchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchh
Q 005174 33 EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112 (710)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (710)
..-++........+|..+|.+.+|++++++....+-.-......-+.++++..+. +...+.......- ....
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDA 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccH
Confidence 3455566677888899999999999999998744220001111344455444443 4444444433322 2224
Q ss_pred hHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHH-hCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCc
Q 005174 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV-RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191 (710)
Q Consensus 113 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 191 (710)
..+...+...|.+++|..+|++.. .+..-+..+. ..+++++|.+++++.. +..+|..+-+++...|++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 446677777888888888887753 1222222223 5667777777766441 355666777777777777
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005174 192 DFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269 (710)
Q Consensus 192 ~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (710)
++|...|... .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|++.+++++...+. +
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 7776666442 4555666677777777777777777755422 23223334666777776666433322 1
Q ss_pred CCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHH
Q 005174 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349 (710)
Q Consensus 270 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 349 (710)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++.. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 234455666666777777777777777664 25666666677777777777666654 3445666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh--ccCch
Q 005174 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA--RVANL 427 (710)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~ 427 (710)
..-.++...|++..|...... ...+...+..++..|.+.|.+++|+.+++..+... +-....|+-+..+++ +.+++
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence 666666667777777666554 22344455577777777788888888776665432 222223333333333 33334
Q ss_pred HHHHHHHHHHHHhCCCCC------chHHHhHHhhhhhhcCChhHHHHHH-------------hhcC--CCChhHHHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNE------HLLLWNSLVEMYARSGKVPEAKSVF-------------DLMS--RRDEVTYTSLIA 486 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~~~--~~~~~~~~~li~ 486 (710)
.+..+.|. ..+.+++ +...|..++-.|.+.|+++.|.... .... ..|+..|...+.
T Consensus 1333 mEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~ 1409 (1630)
T 1xi4_A 1333 REHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ 1409 (1630)
T ss_pred HHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHH
Confidence 34333333 2222222 4566778888888888888777322 1111 125556666666
Q ss_pred HHHhcC---------------ChHHHHHHHHHHHHCCCCCChHHHHH-------------HHHHhhccCcHHHHHHHHHH
Q 005174 487 GYGIQG---------------EGRVALKLFEEMNKNQIKPDHVTMVA-------------VLSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 487 ~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~t~~~-------------ll~a~~~~g~~~~a~~~~~~ 538 (710)
-|...+ +++++.++|.+. |.-|-...|.. +-.-+....+++.-+...+.
T Consensus 1410 Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~---~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~ 1486 (1630)
T 1xi4_A 1410 FYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV---KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDA 1486 (1630)
T ss_pred HHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc---CChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhh
Confidence 666555 666666666522 11111111111 11111222222111111000
Q ss_pred HHH------HhCCC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 539 MTS------IYGIF-PQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 539 ~~~------~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
... ...++ -+ .+.-..-...|.+.|+++.|.+++.+-.. |.--+.+....|+.+.+++.+.-+.+.
T Consensus 1487 ~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1487 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQE 1560 (1630)
T ss_pred ccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 000 00000 11 11122233455666999999999998763 445677788999999999999999888
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 611 RPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 611 ~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
.+.+.|......+...=+.|-++++
T Consensus 1561 --~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1561 --EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred --CChhHHHHHHHHHhccCCchHHHHH
Confidence 5677788777777777788887775
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=4.5e-17 Score=166.40 Aligned_cols=309 Identities=11% Similarity=0.026 Sum_probs=220.7
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 005174 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355 (710)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 355 (710)
..+..+...+...|++++|+..|+++.+.. | .+..++..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p----------------------------------~~~~~~~~~a~~~ 47 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--P----------------------------------DNYIAYYRRATVF 47 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c----------------------------------ccHHHHHHHHHHH
Confidence 445566666677777777777777666532 1 1222334444444
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----cHHHHHHH-----------
Q 005174 356 SRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP----NYVTIASI----------- 417 (710)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~l----------- 417 (710)
...|++++|...|+...+ .+...|..+...|...|++++|...|++..+. .| +...+..+
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRS 125 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHH
Confidence 555555555555544322 23345555555555566666666666655543 23 22222222
Q ss_pred -HHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCC
Q 005174 418 -LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGE 493 (710)
Q Consensus 418 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 493 (710)
...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|+
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 456777888888888888888875 56778888999999999999999999988764 367789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCh-HHHH------------HHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-h----hHHHHH
Q 005174 494 GRVALKLFEEMNKNQIKPDH-VTMV------------AVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-L----EHFACM 555 (710)
Q Consensus 494 ~~~A~~~~~~m~~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l 555 (710)
+++|...|++..+. .|+. ..+. .+...+.+.|++++|...++++.+. .|+ . ..+..+
T Consensus 204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHH
Confidence 99999999998874 3443 2222 2255688899999999999999875 455 2 335568
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 556 VDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
..+|.+.|++++|.+.+++.- .+.+...|..+...+...|+++.|...++.+++++|+++..+..+..++...+
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 899999999999999999873 23478899999999999999999999999999999999988888887766443
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=4.3e-15 Score=165.51 Aligned_cols=484 Identities=12% Similarity=0.068 Sum_probs=335.7
Q ss_pred CchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhC------------CCCCCcc----------HHH
Q 005174 88 KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS------------NIRYPLP----------WNL 145 (710)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------~~~~~~~----------~~~ 145 (710)
.++.-...+++.-+..| ..++.++|+|...|...++-.+. .+.+- .++|+.. -..
T Consensus 853 nrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~e 929 (1630)
T 1xi4_A 853 NRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLE 929 (1630)
T ss_pred HHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHH
Confidence 33433444556666666 56788999999999987654432 22221 1222211 122
Q ss_pred HHHHHHhCCCchH-HHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHH-hcC--CChHHHHHHHHHHHHh
Q 005174 146 LISLYVRDGFYAE-ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACH--EWSLFVHNALVSMYGK 221 (710)
Q Consensus 146 li~~~~~~~~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~--~~~~~~~~~li~~~~~ 221 (710)
||....+++.++. |.-+.++ -|...|..++. .+-+.-+++.++.. ..+ ..++.-....+..|..
T Consensus 930 li~vt~~n~l~k~~arylv~r-------~d~~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~ 997 (1630)
T 1xi4_A 930 LINVCNENSLFKSLSRYLVRR-------KDPELWGSVLL-----ESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMT 997 (1630)
T ss_pred HHHHHhcchhHHHHHHHHHHh-------cCHHHHHHHhc-----CCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHh
Confidence 3333333333332 1112211 13444444441 11123344555544 221 2234444667788889
Q ss_pred cCCHHHHHHHHhhcCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHH
Q 005174 222 FGQVDVARRLFDKMLE-R-----DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295 (710)
Q Consensus 222 ~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 295 (710)
.|.+.+|+++++++.- + +...-+.++.+..+. +..+..+...+... .....+...+...|.+++|.
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAF 1069 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHH
Confidence 9999999999999942 2 335667778777777 55666666666632 22445788899999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 005174 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375 (710)
Q Consensus 296 ~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 375 (710)
.+|++... .......++ ...+++++|.++...+ .++.+|..+..++.+.|++++|...|.+. .|
T Consensus 1070 ~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1070 AIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred HHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 99999631 111122222 2677888888887754 45788999999999999999999999764 67
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
...|..++.++.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+..+.+
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGD 1203 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHH
Confidence 7788999999999999999999999877764 33333335888999998888654442 1 345566778999
Q ss_pred hhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
.|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. -+..+|..+-.+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999986 48999999999999999999999987 3568999999999999999999887
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHHHHhhC
Q 005174 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIH--RNTGIGEWAAEKLLETR 611 (710)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~ 611 (710)
... +.-+.+.+..++..|.+.|.+++|+.+++.. ...| ....|.-|...+.+. ++..++.+.+..-..+.
T Consensus 1273 gl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 653 3345666889999999999999999999876 3333 345666666666554 33333444444434444
Q ss_pred C-----CCCchHHHHHHHHHhcCCchHHHHH
Q 005174 612 P-----ENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 612 p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
| +++..|.-++.+|.+.|.|+.|...
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4 5788899999999999999999864
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1e-16 Score=161.73 Aligned_cols=286 Identities=12% Similarity=0.036 Sum_probs=219.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 005174 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418 (710)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 418 (710)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44555666777777888888888888877643 344566677788888888888888888888763 33456677777
Q ss_pred HHHhccC-chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCCh
Q 005174 419 PLCARVA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEG 494 (710)
Q Consensus 419 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 494 (710)
..+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|+++.+ .+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 7778888 8888888888888764 55677788888888888888888888887653 3456777788888889999
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC-------CCChhHHHHHHHHHHhcCCHHH
Q 005174 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI-------FPQLEHFACMVDLYGRAGLLNK 567 (710)
Q Consensus 495 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~ 567 (710)
++|+..|++..+.. +.+...+..+...+...|++++|...++++.+...- ......+..+..+|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999888753 334667888888888889999999988888765211 2225678888899999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH-hcCCc
Q 005174 568 AKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA-ATGCW 631 (710)
Q Consensus 568 A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 631 (710)
|.+.+++.. .+.+...|..+...+...|+++.|...++++++++|+++..+..++.++. ..|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 998888762 23366788888888888999999999999999999998888888888884 55543
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.8e-17 Score=166.07 Aligned_cols=354 Identities=13% Similarity=0.096 Sum_probs=129.2
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHH
Q 005174 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300 (710)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (710)
+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888885553 8888888888888888888888653 4666778888887778888888876665
Q ss_pred HHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH
Q 005174 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380 (710)
Q Consensus 301 m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (710)
.++. .++..+. +.|+.+|.++|+++++.++++. |+..+|+
T Consensus 87 ark~--~~~~~i~-----------------------------------~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~ 126 (449)
T 1b89_A 87 ARKK--ARESYVE-----------------------------------TELIFALAKTNRLAELEEFING---PNNAHIQ 126 (449)
T ss_dssp -----------------------------------------------------------CHHHHTTTTTC---C------
T ss_pred HHHh--CccchhH-----------------------------------HHHHHHHHHhCCHHHHHHHHcC---CcHHHHH
Confidence 5553 2223333 4455555555555555544432 3444555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
.+...|...|.+++|...|..+ ..|..+..++.+.|+++.|.+.+.++ .++.+|..++.+|...
T Consensus 127 ~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 127 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDG 190 (449)
T ss_dssp ----------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHc
Confidence 5555555555555555555544 13555555555555555555555544 1345566666666666
Q ss_pred CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH--HHHhhccCcHHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV--LSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~a~~~~g~~~~a~~~~~~ 538 (710)
|+++.|......+. .++.....++..|.+.|++++|+.+++...... +--...|+-+ +.+-.+.+++.+..+.|..
T Consensus 191 ~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 191 KEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp TCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66666655554433 333334457777888888888888888776432 2223334433 3333444555555555542
Q ss_pred HHHHhCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 539 MTSIYGIFP------QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 539 ~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
- -.+.| +...|..++-.|...++++.|...+-+-+ |+.---..+.....+-.+.+.--++..-.++-.|
T Consensus 269 ~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 269 R---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp T---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred H---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 2 24444 35678888889999999998877665543 1211111222333334444443333333333333
Q ss_pred CC----------CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 613 EN----------SGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 613 ~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
.- .--+...+..+.+.|.+.-+...+..+...+
T Consensus 344 ~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 344 LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 386 (449)
T ss_dssp GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 21 1113445556666666666666665555433
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=2.9e-15 Score=161.67 Aligned_cols=209 Identities=8% Similarity=0.013 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhCCCCCchHHHhHHhhhhhh-------cCChh-------HHHHHHhhcCC---C-ChhHHHHHHHHHHh
Q 005174 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-------SGKVP-------EAKSVFDLMSR---R-DEVTYTSLIAGYGI 490 (710)
Q Consensus 429 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~ 490 (710)
.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+
T Consensus 256 ~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4556666666653 5556667777766664 57765 77777776653 2 45677777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH-HHhcCCHH
Q 005174 491 QGEGRVALKLFEEMNKNQIKPDH--VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL-YGRAGLLN 566 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~ 566 (710)
.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+. .|. ...|...+.+ +...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 77777777777777763 4542 36666666666777777777777777642 333 2333322222 23577777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc----hHHHHHHHHHhcCCchHHHHHHHH
Q 005174 567 KAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG----YYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 567 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
+|..+|++. ...| +...|..++..+...|+.+.|...++++++..|.++. .|...+......|+.+.+.++.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777765 2223 5677777777777777777777777777777665554 566667777777777777777776
Q ss_pred HHhC
Q 005174 641 MRDL 644 (710)
Q Consensus 641 m~~~ 644 (710)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=4.5e-15 Score=158.48 Aligned_cols=365 Identities=10% Similarity=-0.009 Sum_probs=256.4
Q ss_pred hHHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCceehH
Q 005174 208 SLFVHNALVSMYGK----FGQVDVARRLFDKMLE-RDAVSWNTMISAYAS----KGLWKEAFQLFVEMQEEGVEVNVITW 278 (710)
Q Consensus 208 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 278 (710)
+...+..|...|.. .+++++|...|++..+ .+...+..|...|.. .++.++|.++|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55556666666666 6677777777766533 355566666666666 666777777777666544 34455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 005174 279 NTIAGGCLR----TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354 (710)
Q Consensus 279 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 354 (710)
..|...|.. .+++++|+..|++..+.| +...+..|...
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~Lg~~ 156 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--------------------------------------RDSGQQSMGDA 156 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHHH
Confidence 555555555 556666666666655543 22333445555
Q ss_pred HHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc--
Q 005174 355 YSR----CKDLRHAYILFKMTAE-KSIITWNSMLSGYTH----LDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR-- 423 (710)
Q Consensus 355 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 423 (710)
|.. .+++++|...|++..+ .+..++..+...|.. .++.++|+..|++..+.| +...+..+...+..
T Consensus 157 y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 157 YFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 554 5667777777765443 355666667667766 677788888887777664 34455555555553
Q ss_pred --cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh----cCChhHHHHHHhhcCCC-ChhHHHHHHHHHHhc-----
Q 005174 424 --VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR----SGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQ----- 491 (710)
Q Consensus 424 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~----- 491 (710)
.++.++|...+....+.+ +...+..+..+|.. .++.++|...|++..+. +...+..+...|...
T Consensus 234 g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~ 309 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVA 309 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBC
T ss_pred CCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCc
Confidence 677888888888777655 34556667777776 78899999999887654 677788888888887
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC---cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCC
Q 005174 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG---LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AGL 564 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~ 564 (710)
+++++|+.+|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|..+|.. .++
T Consensus 310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998865 4456666666666656 789999999998764 357788889999988 899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCC---CCchHHHHHHHHHh
Q 005174 565 LNKAKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEWAAEKLLETRPE---NSGYYVLIANMYAA 627 (710)
Q Consensus 565 ~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 627 (710)
+++|.+.|++.....+...+..|...|.. .+|.+.|...++++.+.+|+ ++.....++.++..
T Consensus 383 ~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999987544567888888888887 89999999999999999854 66666777666554
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.6e-16 Score=157.65 Aligned_cols=184 Identities=13% Similarity=0.146 Sum_probs=59.1
Q ss_pred HccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHH
Q 005174 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199 (710)
Q Consensus 120 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 199 (710)
-+.|++++|.+.++++++| .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999665 48999999999999999999999652 578899999999999999999999887
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHH
Q 005174 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 200 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
..... .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 86 ~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 86 MARKK-ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 77643 44578889999999999999999888864 77789999999999999999999999977 4788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHH
Q 005174 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330 (710)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~ 330 (710)
.++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 9999999999999999999888 25667777777777777766663
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=3e-16 Score=158.26 Aligned_cols=262 Identities=10% Similarity=0.017 Sum_probs=227.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHH
Q 005174 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453 (710)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 453 (710)
.+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 456677788889999999999999999998874 3344556667778889999999999999999975 6678889999
Q ss_pred hhhhhhcC-ChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcH
Q 005174 454 VEMYARSG-KVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529 (710)
Q Consensus 454 i~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 529 (710)
...|...| ++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 357789999999999999999999999998853 22456777788899999999
Q ss_pred HHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCh
Q 005174 530 VEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-----------YTPTSAMWATLLGACQIHRNT 597 (710)
Q Consensus 530 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~p~~~~~~~l~~~~~~~g~~ 597 (710)
++|...++++.+ +.|+ ...+..+...|.+.|++++|...+++.. .+.+..+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999985 4566 7889999999999999999999998762 033467899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+.|...+++++++.|+++..+..++.+|.+.|++++|.+.+++..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877654
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.1e-16 Score=164.47 Aligned_cols=279 Identities=8% Similarity=-0.079 Sum_probs=217.8
Q ss_pred HHhcCCHHHHHH-HHHhcCC---C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 005174 355 YSRCKDLRHAYI-LFKMTAE---K----SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426 (710)
Q Consensus 355 ~~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 426 (710)
|.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577788877 7775432 1 34567788888888888888888888888764 4456677778888888888
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHH---------------HHHHH
Q 005174 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTS---------------LIAGY 488 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~ 488 (710)
++.|...+..+++.. +.+..++..+...|...|++++|...|+++.+. +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 888888888888875 567788888888888999999998888876532 2222221 13334
Q ss_pred HhcCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIK-PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLN 566 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 566 (710)
...|++++|+..|+++.+.... ++..++..+...+...|++++|...++++... .|+ ...+..+..+|.+.|+++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHH
Confidence 4889999999999999885322 14778899999999999999999999999875 565 788999999999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCCchH
Q 005174 567 KAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN-----------SGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 567 ~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 633 (710)
+|++.++++. .+.+..+|..+..++...|+++.|...+++++++.|++ ...|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999872 23467889999999999999999999999999999887 7899999999999999999
Q ss_pred HHHHHH
Q 005174 634 LAKVRT 639 (710)
Q Consensus 634 A~~~~~ 639 (710)
|.++++
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 999865
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1.5e-14 Score=156.05 Aligned_cols=403 Identities=10% Similarity=0.090 Sum_probs=292.8
Q ss_pred hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHH
Q 005174 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE--R-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
...+.+...|..++. +.+.|+++.|..+|+++.+ | +...|..++..+.+.|++++|..+|++.... .|+...|.
T Consensus 7 ~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~ 83 (530)
T 2ooe_A 7 EENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWK 83 (530)
T ss_dssp HHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHH
T ss_pred hhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHH
Confidence 345668889999998 4788999999999999955 3 6678999999999999999999999999874 36777777
Q ss_pred HHHHHH-HhcCChHHHHH----HHHHHHhC-CCCCC-hhHHHHHHHHhhc---------cCChHHHHHHHHHHHhhcCCC
Q 005174 280 TIAGGC-LRTGNFKGVLE----LLSRMRTQ-ETYLD-SVATVIGLGACSH---------VGALKLGKEIHGSAVRGCYGE 343 (710)
Q Consensus 280 ~li~~~-~~~g~~~~a~~----~~~~m~~~-~~~p~-~~t~~~~l~~~~~---------~~~~~~a~~i~~~~~~~~~~~ 343 (710)
..+... ...|+.++|.+ +|+..... |..|+ ...|...+..... .|+++.+..++...++.....
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 777533 45677777665 67666543 55554 3445555554433 678999999999998832122
Q ss_pred chhHHHHHHHHH-------------HhcCCHHHHHHHHHh------cC-------CCC--------hhHHHHHHHHHHhc
Q 005174 344 YENVRNALITMY-------------SRCKDLRHAYILFKM------TA-------EKS--------IITWNSMLSGYTHL 389 (710)
Q Consensus 344 ~~~~~~~li~~~-------------~~~g~~~~A~~~~~~------~~-------~~~--------~~~~~~li~~~~~~ 389 (710)
...+|....... .+.++++.|..++.. .. .++ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 223444333221 134567778776664 11 111 24566655443332
Q ss_pred ----CCh----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-------cCchH-------HHHHHHHHHHHhCCCCCch
Q 005174 390 ----DCA----EESAFLFREMFRSGVEPNYVTIASILPLCAR-------VANLQ-------HGKEFHCYILRRAMFNEHL 447 (710)
Q Consensus 390 ----g~~----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~ 447 (710)
++. ..+..+|++.+... +-+...|......+.. .|+++ .|..+++..++.- .+.+.
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p~~~ 321 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNM 321 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CSSCH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-CcccH
Confidence 232 37788899888762 3456677777776664 68877 8899999988742 46678
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC--C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DE-VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA- 522 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a- 522 (710)
.+|..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|..+|++..+.. +.+...|......
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 8999999999999999999999998763 3 33 478999999999999999999999998752 1223333332222
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM----PYTPT--SAMWATLLGACQIHR 595 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~l~~~~~~~g 595 (710)
+...|+.++|..+|+...+. .|+ ...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|
T Consensus 401 ~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 33589999999999998875 465 788999999999999999999999887 22332 558888888889999
Q ss_pred ChHHHHHHHHHHHhhCCCC
Q 005174 596 NTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~ 614 (710)
+.+.+..+.+++.+..|++
T Consensus 478 ~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHCchh
Confidence 9999999999999998854
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=5.3e-16 Score=159.07 Aligned_cols=259 Identities=8% Similarity=-0.083 Sum_probs=196.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3456666777777777777777777776653 3355666667777777777777777777777664 555677777777
Q ss_pred hhhhcCChhHHHHHHhhcCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChHHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRD-------------EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-PDHVTMVAVLS 521 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 521 (710)
.|.+.|++++|...|+++.+.+ ...+..+...|...|++++|+.+|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888877765321 223445678899999999999999999885322 15778899999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChH
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~ 598 (710)
.+...|++++|...|+++.+. .|+ ...|..+..+|.+.|++++|++.++++- ..| +..+|..+..+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999875 565 8889999999999999999999999872 334 5888999999999999999
Q ss_pred HHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 005174 599 IGEWAAEKLLETRPE------------NSGYYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 599 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
.|...+++++++.|+ +...|..++.++...|+.+.|.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999877 367899999999999999999886543
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=9e-14 Score=148.39 Aligned_cols=352 Identities=13% Similarity=0.038 Sum_probs=278.0
Q ss_pred CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCC
Q 005174 238 RDAVSWNTMISAYAS----KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR----TGNFKGVLELLSRMRTQETYLD 309 (710)
Q Consensus 238 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~ 309 (710)
.+...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+++|++..+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 466666666666666 677777777777776653 34556666666666 666666666666665443
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHH
Q 005174 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR----CKDLRHAYILFKMTAEK-SIITWNSMLS 384 (710)
Q Consensus 310 ~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~ 384 (710)
+...+..|...|.. .+++++|...|+...+. +...+..+..
T Consensus 110 ----------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 155 (490)
T 2xm6_A 110 ----------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGD 155 (490)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22334556666766 78999999999876554 6678888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhh
Q 005174 385 GYTH----LDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR----VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456 (710)
Q Consensus 385 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 456 (710)
.|.. .++.++|+..|++..+.| +...+..+-..+.. .++.++|...+....+.+ +...+..+..+
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~ 228 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADM 228 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHH
Confidence 8887 789999999999999875 56667777777776 789999999999999876 45678888888
Q ss_pred hhh----cCChhHHHHHHhhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhcc-
Q 005174 457 YAR----SGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGI----QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS- 526 (710)
Q Consensus 457 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~- 526 (710)
|.. .+++++|...|++..+ .+...+..+...|.. .++.++|+.+|++..+.| +...+..+...+...
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence 886 8899999999998765 467788888888888 899999999999998764 455666676677666
Q ss_pred ----CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 005174 527 ----GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG---LLNKAKEIITKMPYTPTSAMWATLLGACQI----HR 595 (710)
Q Consensus 527 ----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g 595 (710)
+++++|..++++..+. -+...+..+..+|.+.| +.++|++.|++.....+...+..|...|.. .+
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC
Confidence 8999999999998764 24567888888888867 889999999988544678899999999988 89
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 005174 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAA----TGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 646 (710)
+.+.|...++++.+.+ ++..+..|+.+|.. .++.++|.+.+++..+.+.
T Consensus 382 ~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999998864 57899999999998 8999999999999887663
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=7.6e-18 Score=181.71 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=129.4
Q ss_pred CChHHHHHHHHHHHHhcCCHHHHHHHHhhc-------CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH
Q 005174 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKM-------LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278 (710)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 278 (710)
..-..+||+||++|+++|++++|..+|++| ..||++|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 345679999999999999999999999776 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCc------hhHHHHH
Q 005174 279 NTIAGGCLRTGNF-KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY------ENVRNAL 351 (710)
Q Consensus 279 ~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~------~~~~~~l 351 (710)
|+||.++++.|+. ++|.++|++|.+.|+.||..||+.++.++.+.+-++..+++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHHH
Confidence 9999999999985 78999999999999999999999888665554333332222 2344443 3445667
Q ss_pred HHHHHhcCC---------HHHHHHHHH
Q 005174 352 ITMYSRCKD---------LRHAYILFK 369 (710)
Q Consensus 352 i~~~~~~g~---------~~~A~~~~~ 369 (710)
.+.|.+.+. .++-...|+
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~ 305 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFE 305 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHH
Confidence 778887662 456656664
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=8.4e-16 Score=157.69 Aligned_cols=282 Identities=12% Similarity=0.038 Sum_probs=134.9
Q ss_pred CCChHHHHH-HHHHHHHcC---CCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHH
Q 005174 253 KGLWKEAFQ-LFVEMQEEG---VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328 (710)
Q Consensus 253 ~g~~~~a~~-~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~ 328 (710)
.|++++|.. .|++..... ...+...+..+...+.+.|++++|+..|+++.+..
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------- 94 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----------------------- 94 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----------------------
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------
Confidence 355566665 555443211 11134456666666666666666666666665542
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005174 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA---EKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 329 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
+.+..++..+...|.+.|++++|...|+... ..+..+|..+...|...|++++|+..|+++...
T Consensus 95 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 95 -------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122233444444555555555555554432 224455666666666666666666666666654
Q ss_pred CCCCcHHH-HHH---------------HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHH
Q 005174 406 GVEPNYVT-IAS---------------ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469 (710)
Q Consensus 406 g~~p~~~t-~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 469 (710)
. |+... +.. .+..+...|++++|...+..+++..+..++
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----------------------- 216 (368)
T 1fch_A 162 T--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID----------------------- 216 (368)
T ss_dssp S--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC-----------------------
T ss_pred C--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCccc-----------------------
Confidence 3 21111 000 111122444444444444444443311113
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-
Q 005174 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ- 548 (710)
Q Consensus 470 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 548 (710)
..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+. .|+
T Consensus 217 --------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~ 284 (368)
T 1fch_A 217 --------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGY 284 (368)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC
T ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc
Confidence 3444555555555555555555555555421 112445555555555555555555555555543 333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP------------TSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
...+..+..+|.+.|++++|...++++- ..| ...+|..+..++...|+.+.|..++++.
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 4555555555555666666555555441 001 1455666666666666666665555433
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1.5e-14 Score=142.07 Aligned_cols=270 Identities=9% Similarity=-0.048 Sum_probs=211.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEKSI----ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 429 (710)
-....|++..|+..++.....+. .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556888888888877665432 2445567888889999888876654 235667778888888888888999
Q ss_pred HHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
|.+.++.++..+..+.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 9999988887652355677788888999999999999999998 567889999999999999999999999999985
Q ss_pred CCChHHH---HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 005174 510 KPDHVTM---VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMW 584 (710)
Q Consensus 510 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 584 (710)
.|+.... ..++..+...|++++|..+|+++.+. ...+...++.+..+|.+.|++++|.+.+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4664322 12333344568999999999999986 2334888999999999999999999999986 3334 77889
Q ss_pred HHHHHHHHhcCChHH-HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 585 ATLLGACQIHRNTGI-GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 585 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
..++..+...|+.+. +.+.++++++++|+++.. .+...+.+.+|++..-
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 999999999998865 578899999999998654 4566777777776543
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.4e-14 Score=154.19 Aligned_cols=370 Identities=11% Similarity=0.007 Sum_probs=211.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-----C---CCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCC---CC
Q 005174 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEE-----G---VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE---TY 307 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~ 307 (710)
....||.+...+...|++++|++.|++..+. + -.....+|+.+...|...|++++|...+++..+.. ..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888888888999998888876431 1 11234578888888888888888888887765421 00
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhcCC---CChhHHHHH
Q 005174 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC--KDLRHAYILFKMTAE---KSIITWNSM 382 (710)
Q Consensus 308 p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~l 382 (710)
+. ......++..+..++.+. +++++|...|++..+ .+...+..+
T Consensus 130 ~~-------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~ 178 (472)
T 4g1t_A 130 PY-------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGL 178 (472)
T ss_dssp SS-------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cc-------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 00 001112223333333332 345666666655432 233344333
Q ss_pred HHH---HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 383 LSG---YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA----RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 383 i~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
... +...++.++|++.+++..+.. +.+...+..+...+. ..++.+.|.+.+....... +.+..++..+..
T Consensus 179 ~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~ 255 (472)
T 4g1t_A 179 AIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHH
Confidence 333 234455666666666666543 223333333333332 2345666777777666654 555666677777
Q ss_pred hhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCh
Q 005174 456 MYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGI-------------------QGEGRVALKLFEEMNKNQIKPDH 513 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~ 513 (710)
.|.+.|++++|...|++..+ | +..+|..+...|.. .+..++|+..|++..+.. +.+.
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 77777777777777766542 2 44455555544432 233567888888877642 2235
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh----HHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE----HFACMVDL-YGRAGLLNKAKEIITKM-PYTPTSAMWATL 587 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 587 (710)
.++..+...+...|++++|...|++..+. .|+.. .+..+... +...|+.++|+..|++. ...|+...+...
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 56777888899999999999999998764 44422 23333332 34678999999999876 355654433322
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEE
Q 005174 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655 (710)
Q Consensus 588 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 655 (710)
...+...+++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 412 ---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 23356677888899999999999999999999999999999999888776555555554
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=2e-15 Score=152.01 Aligned_cols=252 Identities=7% Similarity=-0.069 Sum_probs=171.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
.+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHc
Confidence 33334444444444444444444332 1233333344444444444444444444444432 33444455555555555
Q ss_pred CChhHHHHHHhhcCCC---ChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRR---DEVTYTSL--------------IA-GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 522 (710)
|++++|...|+++.+. +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 5555555555544321 11122221 22 3677888999999999988753 3357788888889
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~ 599 (710)
+...|++++|...++++... .|+ ...+..+...|.+.|++++|.+.++++. .+.+..+|..+...+...|+++.
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999875 455 7889999999999999999999998872 23467889999999999999999
Q ss_pred HHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 600 GEWAAEKLLETRPE------------NSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 600 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
|...+++++++.|+ ++..|..++.+|.+.|++++|.++++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998 78899999999999999999999865
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=4e-15 Score=146.24 Aligned_cols=245 Identities=10% Similarity=-0.004 Sum_probs=202.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 383 LSGYTHLDCAEESAFLFREMFRSGVEPNY--VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
|.-....|++..|+..++..... .|+. .....+..++...|+++.|...++. . .+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCC
Confidence 44566789999999998876443 4543 3445677899999999999976543 2 466788899999999999
Q ss_pred CChhHHHHHHhhcC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 461 GKVPEAKSVFDLMS----RR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 461 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
|+.++|.+.++++. .| +...+..+...|...|++++|+..+++ ..+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 566778888999999999999999987 45677888899999999999999999
Q ss_pred HHHHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 536 FERMTSIYGIFPQLE---HFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 536 ~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
++++.+. .|+.. ...+++..+...|++++|..+|+++. .+.+...|+.+..++...|++++|+..+++++++
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999875 57632 12334556666799999999999983 4458889999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchH-HHHHHHHHHh
Q 005174 611 RPENSGYYVLIANMYAATGCWDK-LAKVRTCMRD 643 (710)
Q Consensus 611 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 643 (710)
+|+++.++..++.++...|++++ +.++++++.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987 5688887765
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=7.8e-15 Score=150.30 Aligned_cols=231 Identities=11% Similarity=0.015 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHH
Q 005174 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAG 487 (710)
Q Consensus 411 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 487 (710)
...+......+.+.|++++|..++..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3457777888999999999999999999985 67789999999999999999999999998763 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-----------HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005174 488 YGIQGEGRVALKLFEEMNKNQIKPDH-----------VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 556 (710)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+++++.....-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3432 2233457788899999999999999998622222578899999
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 005174 557 DLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 634 (710)
.+|.+.|++++|++.++++. .+.+..+|..+..+|...|+++.|...+++++++.|+++..|..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999872 3347889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 005174 635 AKVRTCMRDLG 645 (710)
Q Consensus 635 ~~~~~~m~~~~ 645 (710)
.+.+++.....
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999887643
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=9.9e-17 Score=173.15 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHH---HcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHH
Q 005174 240 AVSWNTMISAYASKGLWKEAFQLFVEMQ---EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316 (710)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~ 316 (710)
..+||+||.+||+.|++++|.++|.+|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCh-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 005174 317 LGACSHVGAL-KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371 (710)
Q Consensus 317 l~~~~~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (710)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999985 789999999999999999999999998888876666666654444
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=2.9e-13 Score=143.98 Aligned_cols=382 Identities=10% Similarity=-0.050 Sum_probs=212.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhhcC-----------CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-----C
Q 005174 208 SLFVHNALVSMYGKFGQVDVARRLFDKML-----------ER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEE-----G 270 (710)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g 270 (710)
....||.|...|...|++++|++.|++.. .+ ...+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 45567777777888888888877776641 12 3567888888888888888888888776432 1
Q ss_pred -CCC-ceehHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCChh-HHHHHHHH---hhccCChHHHHHHHHHHHhhcCC
Q 005174 271 -VEV-NVITWNTIAGGCLRT--GNFKGVLELLSRMRTQETYLDSV-ATVIGLGA---CSHVGALKLGKEIHGSAVRGCYG 342 (710)
Q Consensus 271 -~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~-t~~~~l~~---~~~~~~~~~a~~i~~~~~~~~~~ 342 (710)
..+ ...++..+..++... +++++|++.|++..+.. |+.. .+..+..+ ....+..+.+...+...++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 111 123455554455443 46888888888877653 4322 22222222 334456666777776666654 3
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH
Q 005174 343 EYENVRNALITMYS----RCKDLRHAYILFKMTA---EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415 (710)
Q Consensus 343 ~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 415 (710)
.+..++..+...+. ..|++++|.+.+++.. ..+...+..+...|...|++++|+..+++..+.. +-+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 34444444444443 3456777888877643 3455677788888888888888888888877653 22333443
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcC
Q 005174 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQG 492 (710)
Q Consensus 416 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 492 (710)
.+...+...+.... ... ...........+..+.|...|++.. ..+..+|..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR--------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC--------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH--------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 33333321111000 000 0111111122234567777777654 336678899999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChH--HHHHHHH-HhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHV--TMVAVLS-ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 569 (710)
++++|+..|++..+....|... .+..+.. .....|+.++|...|++..+ +.|+........ +.+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHH
Confidence 9999999999998854433321 2222222 23577999999999999875 577743332222 2233
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 570 EIITKM-P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 570 ~~~~~m-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
+++++. . .+.+..+|..|..++...|+++.|...++++++++|.+|.++.-+|
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 333332 1 2346778999999999999999999999999999999888776555
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=9.1e-14 Score=139.73 Aligned_cols=148 Identities=13% Similarity=0.016 Sum_probs=74.0
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 497 (710)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 445555566666665555543 33445555555555555555555555554431 2344455555555555555555
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-------------hhHHHHHHHHHHhcCC
Q 005174 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-------------LEHFACMVDLYGRAGL 564 (710)
Q Consensus 498 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~li~~~~~~g~ 564 (710)
+..|+++.+.. +.+..++..+...+...|++++|...++++... .|+ ...+..+..+|.+.|+
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 55555554421 112344445555555555555555555555443 122 3344445555555555
Q ss_pred HHHHHHHHHh
Q 005174 565 LNKAKEIITK 574 (710)
Q Consensus 565 ~~~A~~~~~~ 574 (710)
.++|..++++
T Consensus 302 ~~~A~~~~~~ 311 (327)
T 3cv0_A 302 PDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=6.5e-14 Score=131.36 Aligned_cols=193 Identities=14% Similarity=0.024 Sum_probs=157.3
Q ss_pred CCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHH
Q 005174 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAV 519 (710)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 519 (710)
+++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 556777888888999999999999999987643 6778899999999999999999999999884 454 5678888
Q ss_pred HHHhhcc-----------CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHH
Q 005174 520 LSACSHS-----------GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWAT 586 (710)
Q Consensus 520 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ 586 (710)
...+... |++++|...+++..+. .|+ ...+..+..+|...|++++|++.|++.- ...+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999999874 787 7889999999999999999999999872 1178889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
+..++...|+++.|...++++++++|+++..+..++.++.+.|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.3e-13 Score=130.41 Aligned_cols=227 Identities=8% Similarity=-0.022 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC-CCchHHHhHHhh
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF-NEHLLLWNSLVE 455 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~ 455 (710)
..|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+..+++..+- .++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 345556666666666666666666666554 44444444444444444444444444444432200 00000
Q ss_pred hhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
.....|..+...|...|++++|+..|++..+. .|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 00456777888888888888888888888873 4553 235566788999999
Q ss_pred HHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 536 FERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 536 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
++.+.. ..|+ ...+..+...|...|++++|.+.+++.- .+.+...|..+...+...|+++.|...++.++++.|
T Consensus 128 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 998875 4565 7788889999999999999999998872 334678888999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+++..|..++.+|...|++++|.+.++...+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999998887653
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=5.6e-13 Score=130.23 Aligned_cols=241 Identities=8% Similarity=-0.098 Sum_probs=182.6
Q ss_pred hcCChHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChh
Q 005174 388 HLDCAEESAFLFREMFRSGVE---PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464 (710)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 464 (710)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...+..+++.. +.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 346677777777777765321 134556666667777777777777777777764 556778888888888899999
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 465 EAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 465 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
+|...|+++.+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99988887763 36778999999999999999999999999874 56655555555566777999999999988877
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT-----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 542 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
. ..++...+ .++..+...++.++|.+.+++.- ..|+ ...|..+...+...|+++.|...++++++++|++.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 5 23334444 47788888899999999998873 2222 57788899999999999999999999999999775
Q ss_pred chHHHHHHHHHhcCCchHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
.. .+.++...|++++|.+.+
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 44 477888999999987764
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.9e-13 Score=129.84 Aligned_cols=232 Identities=10% Similarity=-0.012 Sum_probs=157.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCc----HHHHHH
Q 005174 345 ENVRNALITMYSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSG--VEPN----YVTIAS 416 (710)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~~~ 416 (710)
...+..+...|...|++++|...|+...+ .+...|..+...|...|++++|+..+++..+.. ..++ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678899999999999999999986532 677899999999999999999999999988753 1122 355556
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHH
Q 005174 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496 (710)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 496 (710)
+...+...|++++|...+..+.+.. |+ ...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---~~--------------------------------------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---RT--------------------------------------ADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CC--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---ch--------------------------------------hHHHHHHhHHHH
Confidence 6666666666666666666666643 21 123444455666
Q ss_pred HHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 497 ALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 497 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 574 (710)
|+..++++... .| +...+..+...+...|++++|...++++.+. .|+ ...+..+..+|.+.|++++|++.+++
T Consensus 124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666666653 23 2345555666666677777777777776653 343 56666777777777777777777766
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC------CCCCchHHHHH
Q 005174 575 MP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR------PENSGYYVLIA 622 (710)
Q Consensus 575 m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 622 (710)
.- .+.+...|..+..++...|+.+.|...+++++++. |++...+..+.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 52 22346667777777777777777777777777777 66555544443
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=2.1e-12 Score=131.27 Aligned_cols=244 Identities=9% Similarity=0.052 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc-hHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN-LQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
..|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467777788888888888888888888763 3345667777777888886 888888888888875 667888999999
Q ss_pred hhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhc-cCcHH
Q 005174 456 MYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSH-SGLVV 530 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~ 530 (710)
+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999998763 37788999999999999999999999999985 44 46788888888888 56657
Q ss_pred HH-----HHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 005174 531 EG-----QKQFERMTSIYGIFPQ-LEHFACMVDLYGRAG--LLNKAKEIITKMPYTP-TSAMWATLLGACQIHR------ 595 (710)
Q Consensus 531 ~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~~~g------ 595 (710)
+| ...+++... +.|+ ...|+.+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 478888876 4787 778999999999988 6899999998875444 5677888888887764
Q ss_pred --C-hHHHHHHHHHH-HhhCCCCCchHHHHHHHHHhc
Q 005174 596 --N-TGIGEWAAEKL-LETRPENSGYYVLIANMYAAT 628 (710)
Q Consensus 596 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 628 (710)
+ .++|...++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899999999999888877654
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=1.9e-12 Score=126.27 Aligned_cols=244 Identities=10% Similarity=-0.001 Sum_probs=136.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhc
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN--YVTIASILPLCAR 423 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~ 423 (710)
......+...|++++|...|++..+ .+...|..+...|...|++++|+..+++....+..|+ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3445566666777777776665432 2344666666666666666666666666665321111 1223444444444
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503 (710)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (710)
.|++++|...+..+.+.. +. +...|..+...|...|++++|+..|++
T Consensus 87 ~~~~~~A~~~~~~a~~~~--~~-------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD--TT-------------------------------RLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS--TT-------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred cccHHHHHHHHHHHHhcC--cc-------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444444444444432 22 334555555555555555566555555
Q ss_pred HHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCC--
Q 005174 504 MNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL---LNKAKEIITKMP-- 576 (710)
Q Consensus 504 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~-- 576 (710)
..+. .|+ ...+..+...+...+++++|...|+++.+. .|+ ...+..+..++...|+ +++|...+++..
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 5543 232 333444441333344666666666666553 444 5555556666666665 555555555441
Q ss_pred --CCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 577 --YTPT------SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 577 --~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
..|+ ..+|..+...|...|+++.|...++++++++|+++..+..+..+....+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 1122 24667778888889999999999999999999998887777766655443
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=2e-12 Score=135.69 Aligned_cols=247 Identities=10% Similarity=0.031 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhcC----CHHHHHHHHHhcCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005174 347 VRNALITMYSRCK----DLRHAYILFKMTAEKSIITWNSMLSGYTHLD---CAEESAFLFREMFRSGVEPNYVTIASILP 419 (710)
Q Consensus 347 ~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 419 (710)
....|...|...+ ..+.+..+++.....+...+..+...|...| +.++|+..|++..+.| .++
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~--------- 212 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVT--------- 212 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSC---------
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHH---------
Confidence 3344455555544 3444445555555555556666666666666 5566666666655554 222
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc----CChhHHHHHHhhcCCCChhHHHHHHHH-H--HhcC
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS----GKVPEAKSVFDLMSRRDEVTYTSLIAG-Y--GIQG 492 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g 492 (710)
...+..|..+|... +++++|...|++....+...+..+... | ...+
T Consensus 213 ---------------------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 213 ---------------------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELG 265 (452)
T ss_dssp ---------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGC
T ss_pred ---------------------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Confidence 22223333333332 455566666655552244555555554 3 3456
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC-----cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cC
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG-----LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AG 563 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g 563 (710)
++++|+.+|++..+.| +...+..+...|. .| ++++|..+|++.. .-+...+..|..+|.. ..
T Consensus 266 d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~ 336 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKV 336 (452)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCc
Confidence 6777777777766655 3444444444444 33 6677777766553 1235555566666655 33
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH--hcCCchHHHHH
Q 005174 564 LLNKAKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEWAAEKLLETRPENSGYYVLIANMYA--ATGCWDKLAKV 637 (710)
Q Consensus 564 ~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 637 (710)
+.++|...|++.....+......|...|.. ..|.+.|...++++.+..+.. ....+..+.. ..++.++|.++
T Consensus 337 d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~ 414 (452)
T 3e4b_A 337 YPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRL 414 (452)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHH
Confidence 677777777665323334444445444432 346666777777766655432 2223333322 22345555555
Q ss_pred HHHH
Q 005174 638 RTCM 641 (710)
Q Consensus 638 ~~~m 641 (710)
.+..
T Consensus 415 ~~~~ 418 (452)
T 3e4b_A 415 VQQE 418 (452)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 44
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=3.6e-10 Score=122.51 Aligned_cols=217 Identities=10% Similarity=-0.000 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHH-HHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhh
Q 005174 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK-EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472 (710)
Q Consensus 394 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (710)
.+..+|++.+.. ++-+...|......+...|+.+.|. .++...+.. ++.+...+-.++...-+.|+++.|.++|++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455677777765 3446667777777777888888896 999999876 467788888899999999999999999998
Q ss_pred cCC-------------CC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHhhc-
Q 005174 473 MSR-------------RD------------EVTYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHVTMVAVLSACSH- 525 (710)
Q Consensus 473 ~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~- 525 (710)
+.+ |+ ...|...+....+.|..+.|..+|.+..+. +. +....|......-.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHh
Confidence 763 21 236888888888899999999999999875 21 122333322222223
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP----TSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p----~~~~~~~l~~~~~~~g~~~~a 600 (710)
.++.+.|..+|+...+.++ -+...+...++.....|+.+.|..+|++.- ..| ....|...+..-..+|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3569999999999998732 235667889999999999999999999873 223 356899999999999999999
Q ss_pred HHHHHHHHhhCCCCCc
Q 005174 601 EWAAEKLLETRPENSG 616 (710)
Q Consensus 601 ~~~~~~~~~~~p~~~~ 616 (710)
..+.+++.+..|+++.
T Consensus 561 ~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHhCCCCcH
Confidence 9999999999998753
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=4.1e-12 Score=122.25 Aligned_cols=195 Identities=10% Similarity=-0.004 Sum_probs=130.7
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 523 (710)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455666666666666666666665542 245566667777777777777777777766642 22455666666667
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a 600 (710)
...|++++|..+++++.. .+..|+ ...+..+..+|.+.|++++|.+.+++.. .+.+...|..+...+...|+++.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777664 134554 5566677777777777777777776652 223466677777777777777777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
...++.+++..|++...+..++.++...|++++|.+.++.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777655
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1.2e-11 Score=119.03 Aligned_cols=204 Identities=10% Similarity=0.020 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
...|..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------------------------------~~~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-------------------------------------PSSADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------------------------------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------------------------------------CChHHHHHHHHH
Confidence 3456666666666677777777666665542 223444555555
Q ss_pred hhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHH
Q 005174 456 MYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVE 531 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 531 (710)
.|...|++++|.+.|+++. ..+...|..+...|...|++++|+.+|+++.+.+..|+ ...+..+...+...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 5555555666655555443 12455667777777778888888888888776334453 4566777777888888888
Q ss_pred HHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 532 GQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608 (710)
Q Consensus 532 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 608 (710)
|..+++++... .|+ ...+..+...|.+.|++++|...++++ . .+.+...+..+...+...|+.+.|...++.+.
T Consensus 160 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 160 AKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888764 454 777888888889999999998888876 2 23466777788888888999999999999999
Q ss_pred hhCCCCCchHH
Q 005174 609 ETRPENSGYYV 619 (710)
Q Consensus 609 ~~~p~~~~~~~ 619 (710)
++.|+++....
T Consensus 237 ~~~p~~~~~~~ 247 (252)
T 2ho1_A 237 RLYPGSLEYQE 247 (252)
T ss_dssp HHCTTSHHHHH
T ss_pred HHCCCCHHHHH
Confidence 99998766543
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=5.5e-12 Score=118.14 Aligned_cols=189 Identities=14% Similarity=0.028 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhh
Q 005174 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458 (710)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (710)
|..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+...|.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 3334444444444444444444444331 1223333333334444444444444444444432 334445555555555
Q ss_pred hc-----------CChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh
Q 005174 459 RS-----------GKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 459 ~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 55 666666666665542 2 45566777777777777777777777777755 56667777777777
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
..|++++|...|+++.+. .|+ ...+..+..++.+.|++++|++.+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777653 555 666777777777777777777777664
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=8.4e-12 Score=117.56 Aligned_cols=196 Identities=10% Similarity=0.006 Sum_probs=120.9
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 522 (710)
+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344455555566666666666666655432 244556666666666666666666666666532 2244556666666
Q ss_pred hhcc-CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChH
Q 005174 523 CSHS-GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 523 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~ 598 (710)
+... |++++|...++++.+ .+..|+ ...+..+..+|...|++++|++.++++. .+.+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 6666 667777766666655 123444 4556666666667777777766666552 1224556666666666777777
Q ss_pred HHHHHHHHHHhhCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 599 IGEWAAEKLLETRP-ENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 599 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.|...++.+++..| +++..+..++.++...|+.++|..+++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777777 6666666666666777777777766666553
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=7.7e-12 Score=127.03 Aligned_cols=243 Identities=8% Similarity=0.041 Sum_probs=204.2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCC-hhHHHHHHhhcCC---CChhHHHHHHHH
Q 005174 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK-VPEAKSVFDLMSR---RDEVTYTSLIAG 487 (710)
Q Consensus 412 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 487 (710)
..|..+..++...|++++|...+..+++.. +.+..+|+.+..+|.+.|+ +++|...|+++.+ .+...|+.+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 445566667888999999999999999985 7778999999999999997 9999999998873 377899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh-cCC
Q 005174 488 YGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGR-AGL 564 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~-~g~ 564 (710)
+...|++++|+..|+++++. .| +...|..+..++...|++++|...++++.+. .|+ ...|+.+..+|.+ .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999985 44 5678888999999999999999999999875 777 8889999999999 666
Q ss_pred HHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC------
Q 005174 565 LNKA-----KEIITKM-PYTP-TSAMWATLLGACQIHR--NTGIGEWAAEKLLETRPENSGYYVLIANMYAATG------ 629 (710)
Q Consensus 565 ~~~A-----~~~~~~m-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------ 629 (710)
.++| ++.+++. ...| +...|..+...+...| +++.|...++.+ +.+|+++..+..++++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 4667665 2334 6789999999988887 688899999888 889999999999999999975
Q ss_pred ---CchHHHHHHHHH-HhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHH
Q 005174 630 ---CWDKLAKVRTCM-RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688 (710)
Q Consensus 630 ---~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~ 688 (710)
.+++|.++++++ .+ .+|.....|..+......+
T Consensus 330 ~~~~~~~A~~~~~~l~~~--------------------------~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--------------------------KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------------------TCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--------------------------hCchhHHHHHHHHHHHHHH
Confidence 358999998887 42 5677778888776555444
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.9e-11 Score=115.07 Aligned_cols=197 Identities=12% Similarity=0.024 Sum_probs=139.4
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhc-CChH
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQ-GEGR 495 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~ 495 (710)
.+...|+++.|...+..+.+.. +.+...+..+...|...|++++|...|+++. ..+...|..+...|... |+++
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHH
Confidence 3333344444444444433332 3344555566666666666666666666554 23556777788888888 8888
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 496 VALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIIT 573 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 573 (710)
+|+..|+++.+.+..|+ ...+..+..++...|++++|...++++.+. .|+ ...+..+..+|.+.|++++|.+.++
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888887333444 456777888888889999999999888764 455 7788888999999999999999988
Q ss_pred hCC--CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 574 KMP--YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 574 ~m~--~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
++- .+ .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 762 23 4666777777778889999999999999999999887765544
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=2.3e-12 Score=123.19 Aligned_cols=140 Identities=9% Similarity=-0.009 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
..|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++++.+. .|+ ...+..+..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHH
Confidence 344444444444444444444444444421 123334444444444555555555555544432 222 444444555
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 558 LYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
.|.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|...++++++++|+++..+..++
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 5555555555555544431 1123444444555555555555555555555555555544444433
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=4.9e-11 Score=125.16 Aligned_cols=341 Identities=13% Similarity=-0.014 Sum_probs=199.0
Q ss_pred HHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCCh---hHHHHhHhhCCCCCCccHHHHHHHHHhCC--
Q 005174 80 IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY---NNACFLVENSNIRYPLPWNLLISLYVRDG-- 154 (710)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 154 (710)
+...+.+.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++....++..+..+-..+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3344445567777777777776665 344555566666666666 77777777765556666777666555554
Q ss_pred ---CchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCch---HHHHHHHHHH-hcCCChHHHHHHHHHHHHhcC----
Q 005174 155 ---FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD---FGRVVHSCID-ACHEWSLFVHNALVSMYGKFG---- 223 (710)
Q Consensus 155 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g---- 223 (710)
++++|+..|++..+.|. ...+..|-..|...+... .+...+.... .|. ...+..|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc
Confidence 56788888888777553 235555555554443322 2333333333 333 445556667777766
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhc----CChHHHHH
Q 005174 224 QVDVARRLFDKMLERDAVSWNTMISAYASKG---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT----GNFKGVLE 296 (710)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~ 296 (710)
+.+.+..+++.....+...+..+...|.+.| +.++|++.|++..+.|.. +...+..|...|... +++++|+.
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4556666777777777778888888898899 888999999998887643 334445566666554 68899999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHH-h--hccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-----CHHHHHHHH
Q 005174 297 LLSRMRTQETYLDSVATVIGLGA-C--SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK-----DLRHAYILF 368 (710)
Q Consensus 297 ~~~~m~~~~~~p~~~t~~~~l~~-~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~ 368 (710)
+|++.. .| +...+..+-.. + ...++.++|...+....+.| +......|..+|. .| ++++|...|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 999887 33 22223233222 2 45788888888888887766 4556666777776 44 888888888
Q ss_pred HhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----ccCchHHHHHHHHHHHHh
Q 005174 369 KMTAEKSIITWNSMLSGYTH----LDCAEESAFLFREMFRSGVEPNYVTIASILPLCA----RVANLQHGKEFHCYILRR 440 (710)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~ 440 (710)
+.....+...+..|...|.. ..++++|...|++..+.|. |+. ...+-..|. ...+..+|...+....+.
T Consensus 311 ~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 87774456677777766665 3377888888888777663 222 222222222 233566666666666655
Q ss_pred C
Q 005174 441 A 441 (710)
Q Consensus 441 ~ 441 (710)
|
T Consensus 388 g 388 (452)
T 3e4b_A 388 D 388 (452)
T ss_dssp C
T ss_pred C
Confidence 5
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=3.2e-12 Score=122.19 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=154.9
Q ss_pred CchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4456677888888999999999999988754 367788899999999999999999999998753 335778888889
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChH
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~ 598 (710)
.+...|++++|..+++++.+. .| +...+..+...|.+.|++++|.+.++++. .+.+...|..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999875 34 47889999999999999999999999873 3346788999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 599 IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 599 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.|...++.+++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999988753
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=3.5e-11 Score=117.36 Aligned_cols=224 Identities=11% Similarity=-0.057 Sum_probs=124.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCCchHHH
Q 005174 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR----VANLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+.+..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 45566666667777777777777777766632 23344444444444 555555555555544433
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc-
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI----QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH- 525 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 525 (710)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 34444455555555 555555555555555543 44445555555555
Q ss_pred ---cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 005174 526 ---SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AGLLNKAKEIITKMPYTPTSAMWATLLGACQI----H 594 (710)
Q Consensus 526 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~ 594 (710)
.+++++|..+|++..+. + +...+..+..+|.. .+++++|++.+++.....+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 55666666666555542 1 33445555555555 55666666666554222344555555555555 6
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 005174 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAA----TGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 595 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 645 (710)
+++++|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.+
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666666666666544 4556666666666 666666666666555433
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=5.1e-11 Score=116.15 Aligned_cols=227 Identities=10% Similarity=-0.047 Sum_probs=162.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005174 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEK-SIITWNSMLSGYTH----LDCAEESAFLFREMFRSGVEPNYVTIASI 417 (710)
Q Consensus 343 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 417 (710)
.+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35567788889999999999999999987654 56788889999999 999999999999999876 56666666
Q ss_pred HHHHhc----cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHh---
Q 005174 418 LPLCAR----VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI--- 490 (710)
Q Consensus 418 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--- 490 (710)
...+.. .+++++|...+....+.+ +...+..+...|..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK-----------------------------------YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC-----------------------------------CccHHHHHHHHHHcCCC
Confidence 666666 666666666666655543 33445555555555
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc----cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----
Q 005174 491 -QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH----SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR---- 561 (710)
Q Consensus 491 -~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 561 (710)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+. .+...+..+..+|..
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 667777777777766654 34455555555655 67777777777777653 235566677777777
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCC
Q 005174 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.+++++|++.+++.....+...+..+...+.. .++.++|...++++.+++|++
T Consensus 199 ~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 199 TKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77888888777766322336666777777777 788888888888888887754
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=4.6e-11 Score=116.34 Aligned_cols=240 Identities=10% Similarity=-0.016 Sum_probs=169.0
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hHHHHHHHH
Q 005174 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE--KSI----ITWNSMLSG 385 (710)
Q Consensus 312 t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 385 (710)
.+......+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|+...+ .+. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455677888999999999999998865 34555788889999999999999999987654 222 348899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhH
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (710)
|...|++++|+..|++..+.. +.+... +..+...|...|++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~------------------------------------~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDM------------------------------------YGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHH------------------------------------HHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHH------------------------------------HHHHHHHHHHccCHHH
Confidence 999999999999999998863 122233 3445555666777777
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCc---HHHHHHHHHH
Q 005174 466 AKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGL---VVEGQKQFER 538 (710)
Q Consensus 466 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~ 538 (710)
|...|++..+. +...|..+...+...+++++|+..|+++.+. .|+ ...+..+...+...|+ +++|...+++
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 77777766642 4556666662333445888888888888774 344 5566666666666666 7778888877
Q ss_pred HHHHhCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005174 539 MTSIYGIFPQ------LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGAC 591 (710)
Q Consensus 539 ~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 591 (710)
+.+...-.|+ ...|..+...|.+.|++++|.+.+++.- ..| +...+..+....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 7765333344 2567778888888888888888888772 233 455555544433
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=2.6e-11 Score=110.32 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=138.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
+...|..+...|...|++++|+..|++..+. .| +..++..+..++.+.|++++|...+...... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4567888888889999999999999998874 44 4667888888888999999999999888764 555 677788
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 005174 555 MVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (710)
+...+...+++++|.+.+++.. .+.+...|..+...+...|++++|...++++++++|+++..|..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888899999999999888762 33467788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 005174 633 KLAKVRTCMRDL 644 (710)
Q Consensus 633 ~A~~~~~~m~~~ 644 (710)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999887654
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=6.2e-12 Score=122.72 Aligned_cols=242 Identities=11% Similarity=-0.062 Sum_probs=184.0
Q ss_pred hCCCchHHHHHHHHhHHhCCCC-CchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhH
Q 005174 49 GRGNLSKAFEAFTRIRITAASH-DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127 (710)
Q Consensus 49 ~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 127 (710)
..|++++|+..|+++....... ......+..+..++...|+++.|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4588999999999998764322 1223478888899999999999999999999886 5567889999999999999999
Q ss_pred HHHhHhhCC---CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhc
Q 005174 128 ACFLVENSN---IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC 204 (710)
Q Consensus 128 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g 204 (710)
|...|++.. +.+...|..+...|.+.|++++|+..|+++.+ +.|+.......+..+...|+.+.|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998754 44667899999999999999999999999987 3566665555666667778889999888777744
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceeh
Q 005174 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD-------AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277 (710)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 277 (710)
.+++...+. ++..+...++.++|...++...+.+ ...|..+...|.+.|++++|...|++.... .|+.
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 445555554 6677778888889999988886642 467788888888889999999998888764 3422
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 005174 278 WNTIAGGCLRTGNFKGVLELL 298 (710)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~ 298 (710)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 333345666677777776655
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=4e-12 Score=134.35 Aligned_cols=204 Identities=8% Similarity=-0.025 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCCh-hHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV-PEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEE 503 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (710)
+.+...+...... .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|++
T Consensus 85 ~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443333 345677788888888888888 888888887652 3577899999999999999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHhhcc---------CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc--------CCH
Q 005174 504 MNKNQIKPDHVTMVAVLSACSHS---------GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA--------GLL 565 (710)
Q Consensus 504 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~ 565 (710)
..+. .|+...+..+...+... |++++|...+++..+. .|+ ...|..+..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9874 57778888888899998 9999999999999875 676 88899999999999 999
Q ss_pred HHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005174 566 NKAKEIITKMP-YTP----TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 566 ~~A~~~~~~m~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
++|++.|++.- ..| +...|..+..++...|+++.|...++++++++|+++..+..++.++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999873 344 78899999999999999999999999999999999999999999999999999998754
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=1e-11 Score=129.25 Aligned_cols=259 Identities=11% Similarity=-0.001 Sum_probs=156.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchHHHHHHHHHHHHh----CCCCCchHHHhHHhh
Q 005174 384 SGYTHLDCAEESAFLFREMFRSGVEPNY----VTIASILPLCARVANLQHGKEFHCYILRR----AMFNEHLLLWNSLVE 455 (710)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~ 455 (710)
..+...|++++|+..|++..+.+.. +. ..+..+...+...|+++.|...+...++. +..+....++..+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3344444444444444444443211 11 23333334444444444444444444332 101122344555566
Q ss_pred hhhhcCChhHHHHHHhhcCCC---------ChhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC--
Q 005174 456 MYARSGKVPEAKSVFDLMSRR---------DEVTYTSLIAGYGIQGE-----------------GRVALKLFEEMNKN-- 507 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~-- 507 (710)
.|...|++++|...|++..+. ...+|..+...|...|+ +++|+..+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 666666666666666554321 23356667777777777 77777777765431
Q ss_pred --CCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----
Q 005174 508 --QIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP---- 576 (710)
Q Consensus 508 --g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 576 (710)
+-.+ ...++..+...+...|++++|..++++......-.++ ...+..+..+|...|++++|.+.+++.-
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1111 1236666777788888888888888887654211112 2367788888888888888888887652
Q ss_pred CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 577 YTP----TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 577 ~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
... ...++..+...+...|+++.|...+++++++.++. ...|..++.+|.+.|++++|.+.++....
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 14567777788888899999988888888775432 34788899999999999999998887653
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.2e-11 Score=128.27 Aligned_cols=272 Identities=13% Similarity=0.017 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc-HHH
Q 005174 346 NVRNALITMYSRCKDLRHAYILFKMTAE--K-S----IITWNSMLSGYTHLDCAEESAFLFREMFRS----GVEPN-YVT 413 (710)
Q Consensus 346 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t 413 (710)
..+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|...+++.... +-.|. ..+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445555666667777777777665432 1 2 235556666666667777776666665432 11111 223
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCCc----hHHHhHHhhhhhhcCC-------------hhHHHHHHhhcCCC
Q 005174 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEH----LLLWNSLVEMYARSGK-------------VPEAKSVFDLMSRR 476 (710)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~~~~~ 476 (710)
+..+...+...|+++.|...+....+...-..+ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~------- 162 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA------- 162 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH-------
Confidence 444444555555555555555554443200011 2244444444444444 0000000
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN----QIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--- 548 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--- 548 (710)
+++|+..+++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++
T Consensus 163 -----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (406)
T 3sf4_A 163 -----------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 225 (406)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 44444444443321 10111 123444444455555555555555554432111111
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-----
Q 005174 549 -LEHFACMVDLYGRAGLLNKAKEIITKMP----YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN----- 614 (710)
Q Consensus 549 -~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----- 614 (710)
...+..+...|...|++++|...+++.- ..++ ..++..+...+...|+++.|...++.++++.+..
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 305 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH
Confidence 1244455555555555555555554431 0011 2344444455555555555555555555443222
Q ss_pred -CchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 615 -SGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 615 -~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
...+..++.+|...|++++|.+.+++.
T Consensus 306 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 306 EGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334555555555555555555555543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=3.9e-12 Score=132.07 Aligned_cols=296 Identities=12% Similarity=0.009 Sum_probs=202.2
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----Ch
Q 005174 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY---ENVRNALITMYSRCKDLRHAYILFKMTAE-----K----SI 376 (710)
Q Consensus 309 ~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~ 376 (710)
....+...-..+...|+++.|...+..+++...... ..++..+...|...|++++|...|++... . ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344556667778899999999999999998753322 35678889999999999999999886532 1 24
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHhccCc--------------------hHHHH
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPN----YVTIASILPLCARVAN--------------------LQHGK 431 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~ 431 (710)
.++..+...|...|++++|+..+++...... .++ ..++..+...+...|+ ++.|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 5788889999999999999999998876421 112 3366677778888888 66666
Q ss_pred HHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR--DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
..+....+. +.....+ ...+|..+...|...|++++|+..|++..+...
T Consensus 168 ~~~~~al~~-----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 168 DFYEENLSL-----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 666555432 1111110 123455566666666777777666666554210
Q ss_pred -CCC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----
Q 005174 510 -KPD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP---- 576 (710)
Q Consensus 510 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 576 (710)
.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++.-
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 111 225666677777778888888877776643211111 4567778888888888888888877651
Q ss_pred CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC------CCCchHHHHHHHHHhcCCchH
Q 005174 577 YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRP------ENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 577 ~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~ 633 (710)
..++ ..++..+...+...|+++.|...+++++++.+ .....+..++.+|...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 45677777888888999999999888887733 235678888888888887643
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=1.2e-11 Score=124.44 Aligned_cols=260 Identities=13% Similarity=0.033 Sum_probs=164.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccCchHHHHHHHHHHHHh----CCCCCchHHHhHHhh
Q 005174 384 SGYTHLDCAEESAFLFREMFRSGVEPN----YVTIASILPLCARVANLQHGKEFHCYILRR----AMFNEHLLLWNSLVE 455 (710)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~ 455 (710)
..+...|++++|+..|++..+... .+ ...+..+...+...|+++.|...+...... +..+....++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 334444444555544444444321 11 123334444444455555555544443322 101112345566666
Q ss_pred hhhhcCChhHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSR-----RD----EVTYTSLIAGYGIQGE--------------------GRVALKLFEEMNK 506 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 506 (710)
.|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 66677777777766665432 11 2366677777777777 7778777776553
Q ss_pred C----CCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 005174 507 N----QIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP- 576 (710)
Q Consensus 507 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~- 576 (710)
. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11111 335667777788889999999888887654211112 3377888889999999999998888762
Q ss_pred ---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 577 ---YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 577 ---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..++ ..++..+...+...|+++.|...++.++++.|.. ...+..++.+|.+.|++++|.+.+++...
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1112 4567778888999999999999999988875543 44788999999999999999999988775
Q ss_pred C
Q 005174 644 L 644 (710)
Q Consensus 644 ~ 644 (710)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 4
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=5e-09 Score=113.66 Aligned_cols=228 Identities=11% Similarity=0.026 Sum_probs=144.8
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY-ILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFR 404 (710)
Q Consensus 329 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 404 (710)
...+++..+... +....+|-..+..+...|+.++|. .+|++... .+...|-..+...-+.|++++|..+|++++.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555432 345556666666666666666664 66665432 2444566666666667777777777777665
Q ss_pred cCC---------CCc------------HHHHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCCchHHHhHHhhhhhhc-C
Q 005174 405 SGV---------EPN------------YVTIASILPLCARVANLQHGKEFHCYILRR-AMFNEHLLLWNSLVEMYARS-G 461 (710)
Q Consensus 405 ~g~---------~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-g 461 (710)
... .|+ ...|...+....+.|..+.|+.+|..+++. +...+.. |...+.+-.++ +
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l--yi~~A~lE~~~~~ 484 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI--YLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH--HHHHHHHHHTTTS
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHhCC
Confidence 310 131 235666777777778888888888888876 3223333 33333333344 4
Q ss_pred ChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHhhccCcHHHHHHHH
Q 005174 462 KVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP--DHVTMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 462 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
+.+.|..+|+...+ .+...|...+......|+.+.|..+|++.......+ ....|...+.--...|+.+.+..+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48888888887764 356677778887778888888999998887753222 2346777777677788888899998
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhc
Q 005174 537 ERMTSIYGIFPQLEHFACMVDLYGRA 562 (710)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~li~~~~~~ 562 (710)
+++.+. .|+......+++-|.-.
T Consensus 565 ~R~~~~---~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 565 KRFFEK---FPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHH---STTCCHHHHHHHHTCBT
T ss_pred HHHHHh---CCCCcHHHHHHHHhcCC
Confidence 888876 56655555556655433
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=6.7e-10 Score=110.25 Aligned_cols=219 Identities=10% Similarity=0.079 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-------ccCch-------HHHHHHHHHHHHhCCCCCchHHHhHHhhhhh
Q 005174 393 EESAFLFREMFRSGVEPNYVTIASILPLCA-------RVANL-------QHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458 (710)
Q Consensus 393 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (710)
++|..+|++.+... +-+...|......+. ..|++ ++|..++++.++.- .+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 45666666666542 233444444444443 24654 77888888877742 2456678888888888
Q ss_pred hcCChhHHHHHHhhcCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh-ccCcHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSR--R-DEV-TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS-HSGLVVEGQ 533 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~ 533 (710)
+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888889888887764 2 343 78888888888999999999999988753 233444544333322 368999999
Q ss_pred HHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 534 KQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP----YTP--TSAMWATLLGACQIHRNTGIGEWAAEK 606 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 606 (710)
.+|++..+. .|+ ...|..++..+.+.|++++|..+|++.- ..| ....|..++.....+|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998875 454 7788888999999999999999998872 244 466888888888889999999999999
Q ss_pred HHhhCCCCCch
Q 005174 607 LLETRPENSGY 617 (710)
Q Consensus 607 ~~~~~p~~~~~ 617 (710)
+.+..|++...
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999986543
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=6.6e-11 Score=129.98 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=137.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
+..+|+.|...|.+.|++++|+..|++.++. .|+ ..++..+..++.+.|++++|...|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3457788888888888888888888888873 555 667888888889999999999999988864 777 788899
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 005174 555 MVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (710)
+..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999876 2344 67788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005174 633 KLAKVRTCMR 642 (710)
Q Consensus 633 ~A~~~~~~m~ 642 (710)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877664
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=4e-11 Score=124.75 Aligned_cols=262 Identities=11% Similarity=0.031 Sum_probs=161.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-Ch----hHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCcHHHHHHHHH
Q 005174 352 ITMYSRCKDLRHAYILFKMTAE--K-SI----ITWNSMLSGYTHLDCAEESAFLFREMFRS----GV-EPNYVTIASILP 419 (710)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~ 419 (710)
...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..+++..+. +- ......+..+..
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3344444555555555544322 1 11 23444455555555555555555544332 10 111233444444
Q ss_pred HHhccCchHHHHHHHHHHHHhC----CCCCchHHHhHHhhhhhhcCC-----------------hhHHHHHHhhcCC---
Q 005174 420 LCARVANLQHGKEFHCYILRRA----MFNEHLLLWNSLVEMYARSGK-----------------VPEAKSVFDLMSR--- 475 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~--- 475 (710)
.+...|+++.|...+..+++.. ..+....++..+...|...|+ +++|...+++..+
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544331 011223456666667777777 6777666665432
Q ss_pred ----C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhC
Q 005174 476 ----R--DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-PD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544 (710)
Q Consensus 476 ----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 544 (710)
+ ....|..+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++|...+++......
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1 2346777888888899999999988887653110 12 22677788888999999999999988876421
Q ss_pred CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 545 IFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP----YTP----TSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 545 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
-..+ ...+..+..+|...|++++|.+.+++.. ..+ ...++..+...+...|+++.|...+++++++.+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1111 4678889999999999999999998762 111 134677788889999999999999999998865
Q ss_pred C
Q 005174 613 E 613 (710)
Q Consensus 613 ~ 613 (710)
.
T Consensus 375 ~ 375 (411)
T 4a1s_A 375 X 375 (411)
T ss_dssp H
T ss_pred h
Confidence 3
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=8.9e-11 Score=118.04 Aligned_cols=265 Identities=14% Similarity=0.023 Sum_probs=154.5
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhHHHHHHH
Q 005174 317 LGACSHVGALKLGKEIHGSAVRGCYGEY---ENVRNALITMYSRCKDLRHAYILFKMTAE---------KSIITWNSMLS 384 (710)
Q Consensus 317 l~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~ 384 (710)
-..+...|+++.|...+..+++...... ..++..+...|...|++++|...|++... .....+..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3445555666666666666655432211 23445555555556666665555544321 01234444455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCC-
Q 005174 385 GYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK- 462 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 462 (710)
.|...|++++|...+++..+... .++. .....++..+...|...|+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDK--------------------------------VGEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------------------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCc--------------------------------hHHHHHHHHHHHHHHHcCcc
Confidence 55555555555555554433210 0010 0012244555555555555
Q ss_pred -------------------hhHHHHHHhhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-
Q 005174 463 -------------------VPEAKSVFDLMSR-----R----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI-KPD- 512 (710)
Q Consensus 463 -------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 512 (710)
+++|...+++... . ....+..+...|...|++++|+..+++..+... .++
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 5555555554321 1 233667777788888888888888887664210 011
Q ss_pred ---hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-
Q 005174 513 ---HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP----YTPT- 580 (710)
Q Consensus 513 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~- 580 (710)
..++..+...+...|++++|..++++......-.++ ...+..+...|...|++++|...+++.- ..++
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 226677777788888999988888887654211112 4567788888999999999988887762 1111
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 581 ---SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 581 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
..++..+...+...|+++.|...+++++++.++
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 346777888889999999999999999887654
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=2.3e-10 Score=103.94 Aligned_cols=166 Identities=12% Similarity=0.016 Sum_probs=139.8
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 522 (710)
++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567788889999999999999999987763 367788999999999999999999999988753 2245567777778
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~~~~g~~~~ 599 (710)
+...++++.+...+.+.... .|+ ...+..+..+|.+.|++++|++.|++.- . +.+..+|..+..++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88899999999999998864 565 7788999999999999999999998872 2 3467889999999999999999
Q ss_pred HHHHHHHHHhhCCCCC
Q 005174 600 GEWAAEKLLETRPENS 615 (710)
Q Consensus 600 a~~~~~~~~~~~p~~~ 615 (710)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999753
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=1.5e-10 Score=109.30 Aligned_cols=186 Identities=12% Similarity=-0.032 Sum_probs=105.0
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSR----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVL 520 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 520 (710)
++..+..+...|.+.|++++|...|++..+ ++...+..+..+|...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445566666666666666666666665442 44555555666666666666666666666653 333 34555566
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-h-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-L-------EHFACMVDLYGRAGLLNKAKEIITKM-PYTPT---SAMWATLL 588 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~ 588 (710)
..+...|++++|...+++..+. .|+ . ..|..+...+.+.|++++|++.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6666666666666666666553 343 3 34555566666666666666666655 23343 33444454
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++... +...++.+..+.+.+...|.. ......|.+++|...+++..+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 444333 333445555555544333322 223344556888888887764
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=6.4e-10 Score=110.37 Aligned_cols=212 Identities=9% Similarity=0.036 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh-------cCCh-------hHHHHHHhhcCC---C-ChhHHHHHHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-------SGKV-------PEAKSVFDLMSR---R-DEVTYTSLIAGYG 489 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~ 489 (710)
+.|..+|+++++.. +.++.+|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 57778888888874 7778888888888763 5886 899999998764 3 5668999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh-H-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH-hcCCH
Q 005174 490 IQGEGRVALKLFEEMNKNQIKPDH-V-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYG-RAGLL 565 (710)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~-~~g~~ 565 (710)
+.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+ ..|+ ...|...+.... ..|+.
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999998 45653 3 788889889999999999999999985 3454 555554444433 36999
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 566 NKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET---RPE-NSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 566 ~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
++|.++|++.- .+.+...|..++..+...|+.+.|...++++++. .|+ ....|..++..+.+.|++++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999872 2346889999999999999999999999999995 553 56788999999999999999999999
Q ss_pred HHHhCCC
Q 005174 640 CMRDLGV 646 (710)
Q Consensus 640 ~m~~~~~ 646 (710)
++.+...
T Consensus 266 ~a~~~~p 272 (308)
T 2ond_A 266 RRFTAFR 272 (308)
T ss_dssp HHHHHTT
T ss_pred HHHHHcc
Confidence 8876554
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=4.5e-11 Score=118.91 Aligned_cols=235 Identities=12% Similarity=0.101 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHh------CCCC
Q 005174 378 TWNSMLSGYTHLDCAEESAFLFREMFRS-------GVEPNYVTIASILPLCARVANLQHGKEFHCYILRR------AMFN 444 (710)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~ 444 (710)
+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +..+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555556666666555555442 11112233344444444455555555544444432 1011
Q ss_pred CchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-ChHHHH
Q 005174 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN------QIKP-DHVTMV 517 (710)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~ 517 (710)
....++..+...|...|++++|...|++ +.+. +-.| ....+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------------------a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKR-------------------------------ALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHH-------------------------------HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHH-------------------------------HHHHHHHhcCCCChHHHHHHH
Confidence 2233444455555555555555555444 3321 1111 122344
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-
Q 005174 518 AVLSACSHSGLVVEGQKQFERMTSIY-----GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP----------YTPT- 580 (710)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~- 580 (710)
.+...+...|++++|..+++++.... +..|. ...+..+..+|.+.|++++|.+.++++. ..+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 44445555555555555555554321 01222 3345555555555555555555555431 0010
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 581 ------SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 581 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
...+..+...+...+.+..+...++......|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111112222233444444555566666666676777777888888888888888877776543
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=4.8e-10 Score=101.67 Aligned_cols=161 Identities=16% Similarity=0.056 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++++.+. .|+ ...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Confidence 34455556666666666666666665431 224555666666666677777777777766653 343 5666677777
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 005174 559 YGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 636 (710)
|...|++++|.+.++++. .+.+...|..+...+...|+++.|...++.+++..|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776652 234566777777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 005174 637 VRTCMRDL 644 (710)
Q Consensus 637 ~~~~m~~~ 644 (710)
.++...+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88776543
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=3.5e-10 Score=116.32 Aligned_cols=224 Identities=9% Similarity=0.017 Sum_probs=134.0
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCC----chHHHhHHhhhhhhcCChhHHHHHHhhcCC-----C-----ChhHHHHHH
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNE----HLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----R-----DEVTYTSLI 485 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li 485 (710)
.+...|+++.|...+....+...-.+ ...++..+...|...|++++|...+++..+ + ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34445555555555555554310111 234556666666666666666666655431 1 123666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC-hhHHHHHH
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIK-PD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIY---GIFPQ-LEHFACMV 556 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li 556 (710)
..|...|++++|+..|++..+.... ++ ..++..+...|...|++++|...+++..+.. +..|. ..++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 7777777887777777776642100 11 2356667777778888888888877776521 12244 56677788
Q ss_pred HHHHhcCCHHHHHHHHHhCC------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh--CCCCCchHHHHHHHHHh
Q 005174 557 DLYGRAGLLNKAKEIITKMP------YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET--RPENSGYYVLIANMYAA 627 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~ 627 (710)
.+|.+.|++++|.+.+++.- ..|. ...+..+...+...|+.+...++++.+.+. .|.....+..++.+|..
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 88888888888887777651 1121 223455556667777743333333333333 23335567788888888
Q ss_pred cCCchHHHHHHHHHHh
Q 005174 628 TGCWDKLAKVRTCMRD 643 (710)
Q Consensus 628 ~g~~~~A~~~~~~m~~ 643 (710)
.|++++|.+.+++...
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888877654
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=7.9e-10 Score=113.65 Aligned_cols=230 Identities=9% Similarity=-0.059 Sum_probs=162.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC-----chHHHhH
Q 005174 383 LSGYTHLDCAEESAFLFREMFRS----GVEP-NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE-----HLLLWNS 452 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 452 (710)
...+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+...-.+ ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455666666666666666543 1111 123455555566666677766666666655321111 1346777
Q ss_pred HhhhhhhcCChhHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHH
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSR-----RD----EVTYTSLIAGYGIQGEGRVALKLFEEMNKN----QIKP-DHVTMVA 518 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ 518 (710)
+...|...|++++|...|++..+ .+ ..++..+...|...|++++|+..|++..+. +..| ...++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 88888888888888888877652 11 247888999999999999999999998762 2323 3557888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCC--CCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGI--FPQ-LEHFACMVDLYGRAGL---LNKAKEIITKMPYTPT-SAMWATLLGAC 591 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~l~~~~ 591 (710)
+...+...|++++|...+++......- .|. ...+..+...|...|+ +++|+.++++....|+ ...+..+...|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 888999999999999999988764211 222 3346778889999999 9999999999865443 34667788889
Q ss_pred HhcCChHHHHHHHHHHHhhCC
Q 005174 592 QIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p 612 (710)
...|+++.|...+++++++..
T Consensus 350 ~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988743
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=3.2e-10 Score=119.68 Aligned_cols=177 Identities=8% Similarity=-0.047 Sum_probs=155.4
Q ss_pred hhHHHHHHhhcCC---CChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHH
Q 005174 463 VPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEG-RVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFE 537 (710)
Q Consensus 463 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (710)
++++...++.... .+...|..+...|...|++ ++|+..|++..+. .|+ ...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666665442 3678899999999999999 9999999999885 444 7789999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc--------CChH
Q 005174 538 RMTSIYGIFPQLEHFACMVDLYGRA---------GLLNKAKEIITKMP--YTPTSAMWATLLGACQIH--------RNTG 598 (710)
Q Consensus 538 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~--------g~~~ 598 (710)
+..+ +.|+...+..+..+|... |++++|++.+++.- .+.+...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 578888899999999999 99999999999872 234688999999999988 9999
Q ss_pred HHHHHHHHHHhhCC---CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 599 IGEWAAEKLLETRP---ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 599 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.|...++++++++| +++..|..++.+|...|++++|.+.+++....
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999988753
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=2.2e-08 Score=102.36 Aligned_cols=194 Identities=12% Similarity=0.024 Sum_probs=120.2
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--ChH
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSR----------R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK--P--DHV 514 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 514 (710)
+..+...|...|++++|...+++... + ....+..+...+...|++++|...+++..+.... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44455556666666666666654431 1 1234555666777778888888877776653211 1 123
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-----CMVDLYGRAGLLNKAKEIITKMP-YTPT-----SAM 583 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~ 583 (710)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 556666677777888888888887765421111111111 23344667888888888888773 1111 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+..+...+...|+++.|...++.+.+..+.. ...+..++.+|...|+.++|.+.++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5666677778888888888888777654321 23667778888888888888888776654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=2e-09 Score=101.47 Aligned_cols=205 Identities=12% Similarity=0.054 Sum_probs=161.0
Q ss_pred CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHH
Q 005174 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLI 485 (710)
Q Consensus 409 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 485 (710)
.|...+......+...|++++|...+..+++.. .+++...+..+..+|.+.|++++|...|++..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 456777888888999999999999999999986 3377778888999999999999999999987643 566899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---hhHHHH
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKPD-H-------VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ---LEHFAC 554 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 554 (710)
..|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+++.+ +.|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 9999999999999999999884 444 3 3577777888899999999999999875 5776 567788
Q ss_pred HHHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 555 MVDLYGRAGLL--NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 555 li~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
+..+|...|+. ++|..+. ..+...+.... ....++++.|...++++++++|+++.....+..+..
T Consensus 159 l~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 88888776653 3332221 22334443333 345577899999999999999999888777766543
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=1.2e-10 Score=115.67 Aligned_cols=254 Identities=15% Similarity=0.085 Sum_probs=141.9
Q ss_pred hcccccCCCCCCcchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHh-----CCCCCchhhHHHHHHHHhcccCchHhHHH
Q 005174 21 FIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRIT-----AASHDVVLDSFAHIIFCCGKVKALAQGKQ 95 (710)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 95 (710)
.....++......+.....+..+...|...|++++|+..|+++.+. +..+......+..+...+...|+++.|..
T Consensus 11 ~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 90 (311)
T 3nf1_A 11 RENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAN 90 (311)
T ss_dssp GGGGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4456666777777888899999999999999999999999998763 11222222367778888888899999888
Q ss_pred HHHHHHHh------CC-CCCCchhhHHHHHHHccCChhHHHHhHhhCCC-------C----CCccHHHHHHHHHhCCCch
Q 005174 96 LHACAIAL------GL-EKNPVLVPKLVTFYASFSLYNNACFLVENSNI-------R----YPLPWNLLISLYVRDGFYA 157 (710)
Q Consensus 96 ~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~ 157 (710)
.+..+++. +- +....++..+...|...|++++|...|++... + ....|..+...|...|+++
T Consensus 91 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 91 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 88887765 11 12234555666666666666666666654211 0 1122444444444445555
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhc-CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005174 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236 (710)
Q Consensus 158 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 236 (710)
+|+..|++..+.- .....+ .+....++..+...|...|++++|...|++..
T Consensus 171 ~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 171 EVEYYYQRALEIY----------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHH----------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5544444443210 000001 11233456666777777777777777776663
Q ss_pred CC------------------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHH
Q 005174 237 ER------------------DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298 (710)
Q Consensus 237 ~~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 298 (710)
+. ....+..+...+...+.+.++...+...... .+.+..+|..+...|.+.|++++|.+.|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 21 1111222223333444455555555554332 1224456677777777777777777777
Q ss_pred HHHHh
Q 005174 299 SRMRT 303 (710)
Q Consensus 299 ~~m~~ 303 (710)
++..+
T Consensus 302 ~~al~ 306 (311)
T 3nf1_A 302 EAAMR 306 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=3.1e-09 Score=108.98 Aligned_cols=222 Identities=9% Similarity=-0.032 Sum_probs=130.2
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCC----chHHHhHHhhhhhhcCChhHHHHHHhhcCC-----C-----ChhHHHHHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNE----HLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----R-----DEVTYTSLIA 486 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 486 (710)
+...|+++.|...+..+.+.....+ ...++..+...|...|+++.|...+++..+ + ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3455666666666666554321111 234566666666777776666666655431 1 1335667777
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhC--CCCC-hhHHHHHHHH
Q 005174 487 GYGIQGEGRVALKLFEEMNKN----QIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG--IFPQ-LEHFACMVDL 558 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~-~~~~~~li~~ 558 (710)
.|...|++++|+..|++..+. +-.+ ...++..+...+...|++++|...+++...... ..|. ..++..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777777777777777776542 1111 123566666777777888888877777765211 2333 5567777778
Q ss_pred HHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh--CCCCCchHHHHHHHHHhcC
Q 005174 559 YGRAGLLNKAKEIITKM----PY--TPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET--RPENSGYYVLIANMYAATG 629 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 629 (710)
|.+.|++++|...+++. +. .|. ...+..+...+...++.+...++++.+.+. .|+....+..++.+|...|
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCC
Confidence 88888888887777765 11 222 233444445555666633333333333332 2233456677888888888
Q ss_pred CchHHHHHHHHHH
Q 005174 630 CWDKLAKVRTCMR 642 (710)
Q Consensus 630 ~~~~A~~~~~~m~ 642 (710)
++++|.+.+++..
T Consensus 351 ~~~~A~~~~~~al 363 (378)
T 3q15_A 351 HFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888888877654
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=3.7e-09 Score=95.68 Aligned_cols=168 Identities=8% Similarity=-0.071 Sum_probs=143.3
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 523 (710)
...+..+...|...|++++|...|+++.+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455777888899999999999999988753 67788999999999999999999999998752 33567888888899
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGE 601 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~ 601 (710)
...|++++|..+++++... ...+...+..+..+|.+.|++++|.+.+++.. .+.+...|..+...+...|+.+.|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999875 22347888999999999999999999998872 3346788999999999999999999
Q ss_pred HHHHHHHhhCCCCCch
Q 005174 602 WAAEKLLETRPENSGY 617 (710)
Q Consensus 602 ~~~~~~~~~~p~~~~~ 617 (710)
..++.++++.|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999887544
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=3.5e-08 Score=101.05 Aligned_cols=227 Identities=9% Similarity=-0.024 Sum_probs=157.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC-----chHHHhH
Q 005174 383 LSGYTHLDCAEESAFLFREMFRSGV-EPN----YVTIASILPLCARVANLQHGKEFHCYILRRAMFNE-----HLLLWNS 452 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 452 (710)
...+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+....+...-.+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345566677777777666654310 112 23455555566667777777776666654321111 2446677
Q ss_pred HhhhhhhcCChhHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHHHHH
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSR-----RD----EVTYTSLIAGYGIQGEGRVALKLFEEMNK-----NQIKPDHVTMVA 518 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 518 (710)
+...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 78888888888888888876543 12 34677888899999999999999998876 32 223567788
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCC--CCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGI--FPQ-LEHFACMVDLYGRAGL---LNKAKEIITKMPYTPT-SAMWATLLGAC 591 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~l~~~~ 591 (710)
+...+.+.|++++|..++++..+...- .|. ...+..+...|...|+ +++|+..+++....|+ ...+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 888899999999999999998875322 222 4456777777888888 8999999998764443 34556777889
Q ss_pred HhcCChHHHHHHHHHHHhh
Q 005174 592 QIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~ 610 (710)
...|+++.|...+++++++
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999888765
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=1.4e-08 Score=97.96 Aligned_cols=204 Identities=9% Similarity=-0.017 Sum_probs=119.7
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCC---C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-hHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---D---EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI-KPD-HVTMV 517 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 517 (710)
+...+-.+...+.+.|++++|...|+++.+. + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444555555555556666666666555421 2 33455555555555666666666655555211 111 22334
Q ss_pred HHHHHhhc--------cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 005174 518 AVLSACSH--------SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588 (710)
Q Consensus 518 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~ 588 (710)
.+..++.. .|++++|...|+++... .|+ .....++.......+.. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44444444 55555555555555543 233 11121111111000000 01135667
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCcCCCCeeEE
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMYAAT----------GCWDKLAKVRTCMRDLGVRKIPGCAWV 655 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 655 (710)
..+...|+++.|...++.+++..|++ +..+..++.+|... |++++|.+.++.......
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 88899999999999999999999985 45789999999977 899999999998876332
Q ss_pred EECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHH
Q 005174 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690 (710)
Q Consensus 656 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 690 (710)
.+|.....+..+.++...+++
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 345556677777777776654
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.02 E-value=3e-09 Score=116.90 Aligned_cols=166 Identities=15% Similarity=0.123 Sum_probs=137.9
Q ss_pred CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHH
Q 005174 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVA 518 (710)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 518 (710)
.+.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|+..|++..+. .|+ ...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 345567788888888899999999988887653 36778888999999999999999999998874 555 668888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHR 595 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g 595 (710)
+..++...|++++|.+.|++..+. .|+ ...|+.+..+|.+.|++++|++.|++. ...| +...|..|..++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 888999999999999999998864 777 788999999999999999999999886 3344 5778888999999999
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 005174 596 NTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~ 613 (710)
+.+.|.+.+++++++.|+
T Consensus 160 ~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 160 DWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhChh
Confidence 999999999998887543
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=1.9e-07 Score=95.25 Aligned_cols=58 Identities=16% Similarity=0.015 Sum_probs=33.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCce----ehHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNV----ITWNTIAGGCLRTGNFKGVLELLSRMRT 303 (710)
Q Consensus 246 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (710)
....+...|++++|...+++........+. .+++.+...+...|++++|...+++...
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334556677777777777776654321111 1344555566666777777766666543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=6.4e-09 Score=101.40 Aligned_cols=222 Identities=14% Similarity=0.141 Sum_probs=153.4
Q ss_pred hccCchHHHHHHHHHHHHhC------CCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-------C----ChhHHHHH
Q 005174 422 ARVANLQHGKEFHCYILRRA------MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-------R----DEVTYTSL 484 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 484 (710)
...|+++.|...+...++.- ..+....++..+...|...|++++|...|+++.+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35677777877777776531 0234567888899999999999999999987652 1 34578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-hhH
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKN------QIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIY-----GIFPQ-LEH 551 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 551 (710)
...|...|++++|+..|++..+. .-.| ...++..+...+...|++++|..+++++.... +-.|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1123 24577788888899999999999999887641 11343 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHhcCChHHHHH------HHHHHHhhCCCC
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP----------YTP-TSAMWATLLGACQIHRNTGIGEW------AAEKLLETRPEN 614 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~----------~~p-~~~~~~~l~~~~~~~g~~~~a~~------~~~~~~~~~p~~ 614 (710)
+..+..+|.+.|++++|.+.+++.. ..+ ....|..+.......+....+.. .++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999988762 122 22233333333333332222211 111111223445
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 615 SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+..+..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999987654
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=2e-07 Score=89.57 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=112.5
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 466 AKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 466 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555665542 344555667777777888888888887776544322 344666677777788888888888888765
Q ss_pred HhCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-
Q 005174 542 IYGIFP-----QLEHFACMVDL--YGRAG--LLNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET- 610 (710)
Q Consensus 542 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 610 (710)
. .| +..+...|+.+ ....| ++++|..+|+++. ..|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 56 23344444444 22233 7888888888773 3344333334444677778888888888877665
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 611 ---------RPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 611 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+|+++.++..++.+....|+ +|.+++.++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 47777777777777777776 77777777775
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=2.4e-09 Score=93.17 Aligned_cols=141 Identities=9% Similarity=-0.022 Sum_probs=106.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA 562 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 562 (710)
...+...|++++|+..+++.... .|+ ...+..+...|...|++++|.+.|++..+. .|+ ...|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 34455667778888887776542 333 334556777788888888888888888764 676 77888888888888
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 563 GLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEW-AAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 563 g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
|++++|+..|++. ...| +..+|..+...+...|+.+.+.+ .++++++++|+++..|...+.++.+.|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888876 2344 57788888888888888866555 4689999999999999999999988885
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=9e-08 Score=89.79 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=110.3
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----HHH
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR--RD----EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV----TMV 517 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 517 (710)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3445555666677777777777776653 21 235666667777777777777777776653 23221 233
Q ss_pred HHHHHhhc------------------cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 005174 518 AVLSACSH------------------SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYT 578 (710)
Q Consensus 518 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 578 (710)
.+..++.. .|++++|...|+++.+. .|+ ...+.+...+.. .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH---------
Confidence 33333322 34555555555555532 343 222211111000 00000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS---GYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
......+...+...|+++.|...++.+++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112455668889999999999999999999875 67999999999999999999999998876654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=2.5e-08 Score=96.15 Aligned_cols=203 Identities=13% Similarity=0.027 Sum_probs=147.5
Q ss_pred CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCc---hHHHhHHhhhhhhcCChhHHHHHHhhcCC--C----Chh
Q 005174 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH---LLLWNSLVEMYARSGKVPEAKSVFDLMSR--R----DEV 479 (710)
Q Consensus 409 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~ 479 (710)
.+...+......+...|++++|...+..+++.. +.+ ...+..+..+|.+.|++++|...|++..+ | ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 455667777778889999999999999999875 333 67888999999999999999999998864 2 234
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh
Q 005174 480 TYTSLIAGYGI--------QGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550 (710)
Q Consensus 480 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 550 (710)
.+..+..++.. .|++++|+..|++..+. .|+.. ....+ ..+...... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 99999999999999884 45432 22111 111111111 012
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhhCCCCC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP-YTP----TSAMWATLLGACQIH----------RNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 615 (710)
.+..+...|.+.|++++|+..|+++- ..| ....+..+..++... |+++.|...++.+++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 25667888889999999998888762 223 245666777777655 888999999999999999985
Q ss_pred ---chHHHHHHHHHhcCCchHH
Q 005174 616 ---GYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 616 ---~~~~~l~~~~~~~g~~~~A 634 (710)
..+..+..++.+.|+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3455666666666665544
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=1.3e-08 Score=99.99 Aligned_cols=187 Identities=11% Similarity=-0.003 Sum_probs=131.0
Q ss_pred hhhhhhcCChhHHHHHHhhcCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--hHHHHHH
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRR-----D----EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI---KPD--HVTMVAV 519 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~l 519 (710)
...|...|++++|...|.+..+- + ..+|+.+...|...|++++|+..|++..+... .+. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566778888888887765421 1 45788888999999999999999888775211 111 3477788
Q ss_pred HHHhhcc-CcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---CH-----HHHH
Q 005174 520 LSACSHS-GLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP---TS-----AMWA 585 (710)
Q Consensus 520 l~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~-----~~~~ 585 (710)
...|... |++++|...|++..+.+.-..+ ..++..+...|.+.|++++|+..|++.. ..| .. ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888886 9999999999998764211111 3568889999999999999999998862 222 21 1567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--hcCCchHHHHHHHH
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGY-----YVLIANMYA--ATGCWDKLAKVRTC 640 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~ 640 (710)
.+..++...|+++.|...++++++++|+.... +..++..+. ..+++++|.+.++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 77778889999999999999999999986543 344556664 45678888776543
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=1.9e-08 Score=98.68 Aligned_cols=175 Identities=10% Similarity=-0.063 Sum_probs=92.4
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHhccCchHHHHHHH
Q 005174 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS----GVEPN-YVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
++++|...|+.. ...|...|++++|+..|.+.... |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766543 66677788888888887776543 21111 245555555566666666666665
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC-CC
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ-GEGRVALKLFEEMNKNQIK-PD 512 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~ 512 (710)
...++.. ...|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l~----------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 101 ENAIQIF----------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHH----------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH----------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 5554421 001111110 12445555555554 6666666666555442100 00
Q ss_pred ----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---h-----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 513 ----HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ---L-----EHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 513 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
..++..+...+...|++++|...|++.... .|+ . ..|..+..++...|++++|+..+++.
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234555555666666666666666665543 222 1 13455555666666666666666655
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=7.3e-09 Score=90.10 Aligned_cols=121 Identities=17% Similarity=0.010 Sum_probs=101.3
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHR 595 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g 595 (710)
|...+...|++++|...++.... ..|+ ...+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677899999999988763 4565 556778999999999999999999987 2334 7889999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH-HHHH
Q 005174 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR-TCMR 642 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~-~~m~ 642 (710)
+++.|...++++++++|+++..|..++.+|.+.|++++|.+.+ ++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654 5544
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=4.1e-08 Score=83.19 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=60.6
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCh
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNT 597 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~ 597 (710)
..+...|++++|..+++.+.+. .| +...+..+...+...|++++|...++++. .+.+...|..+...+...|++
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 3333444444444444444332 12 13334444444444444444444444431 122344455555555555666
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+.|...++.+.+..|+++..+..++.+|.+.|++++|.+.++.+..
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666666666666666666666666666666665543
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=6.6e-08 Score=94.13 Aligned_cols=163 Identities=10% Similarity=0.045 Sum_probs=93.1
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCC
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR-------R----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN------QIK 510 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 510 (710)
.++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|+..|++..+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455555555555555555555554431 1 2345666777777777777777777776653 112
Q ss_pred CC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh------CCCCC-hhHHHHHHHHHHhcC------CHHHHHHHHHhCC
Q 005174 511 PD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIY------GIFPQ-LEHFACMVDLYGRAG------LLNKAKEIITKMP 576 (710)
Q Consensus 511 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~m~ 576 (710)
|+ ..++..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+ .+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 32 3466677777888888888888888776531 12333 333444443333322 3444455555543
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 577 -YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 577 -~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
..| ...++..+...+...|+++.|...+++++++
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 3456777888888999999999988888765
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=3.1e-08 Score=82.99 Aligned_cols=99 Identities=10% Similarity=0.013 Sum_probs=66.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 545 IFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PY-TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
+.|+ ...+......|.+.|++++|++.|++. .. +.+...|..+..++...|+++.|...++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4555 455666666677777777777766665 22 23566666666667777777777777777777777777777777
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 005174 622 ANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777666553
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=1.3e-07 Score=79.96 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++... .|+ ...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 56677788888888888888888887643 235667777777788888888888888888764 344 6677888888
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 559 YGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
+.+.|++++|.+.++++. .+.+...|..+...+...|+++.|...++.+++.+|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888999999988888762 2346777888888888899999999999988888875
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=4.4e-08 Score=108.20 Aligned_cols=191 Identities=14% Similarity=0.032 Sum_probs=138.4
Q ss_pred hccCchHHHHHHHHHHH--------HhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 005174 422 ARVANLQHGKEFHCYIL--------RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGI 490 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 490 (710)
...|++++|.+.++.++ +. .+.+...+..+...|...|++++|...|+++.+ .+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67788888888888887 43 255667788888888888888888888887763 366778888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 005174 491 QGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 568 (710)
.|++++|+..|++..+. .| +...+..+..++...|++++ .+.|+++.+. .|+ ...|..+..+|.+.|++++|
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 34 45667777778888888888 8888888764 666 67788888888888888888
Q ss_pred HHHHHhCC-CCCC-HHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhhCCCCCchHHH
Q 005174 569 KEIITKMP-YTPT-SAMWATLLGACQIHRN-----TGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 569 ~~~~~~m~-~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
++.|++.. ..|+ ...|..+..++...++ .+...++.+.+.++.++++..+..
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 88888873 4554 4566666666655554 355566666777777766665443
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=1.3e-05 Score=84.26 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHH-HHHHhh
Q 005174 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDL 472 (710)
Q Consensus 394 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~ 472 (710)
.+..+|++++... +.+...|...+..+...|+.+.|+.++...+.. +.+...+.. |+.....++. ..+.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 3455666665542 333455555555556666677777777766665 222222222 1111111111 111111
Q ss_pred cC------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHhhccCcHHHHHHHHHH
Q 005174 473 MS------------RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV--AVLSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 473 ~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~ 538 (710)
.. ......|...+..+.+.++.+.|..+|++. ... ..+...|. +.+... ..++.+.|+.+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHHHHH
Confidence 10 001245777777777888899999999999 321 22334443 223222 23469999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 539 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 609 (710)
..+.++- +...+...++...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..+
T Consensus 346 al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9887432 24556778888899999999999999984 3678899988888889999988888887764
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.81 E-value=3.7e-07 Score=87.69 Aligned_cols=239 Identities=8% Similarity=-0.018 Sum_probs=154.4
Q ss_pred HhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 356 SRCKDLRHAYILFKMTAEKSI-ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
.-.|.+..++.-...+...+. ..---+.++|...|++... ..-.|....+..+...+ ..+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 344666666664444433222 2222344666666665531 11233333333333322 222 45556
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
+..+..+ +++......+..+|...|++++|.+++.+... .+...+..++..|.+.|+.+.|.+.+++|.+ .
T Consensus 90 ~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 90 ENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 6555543 34455556788888889999999999988743 2456777888999999999999999999987 4
Q ss_pred CC-----ChHHHHHHHHHh--hc--cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---
Q 005174 510 KP-----DHVTMVAVLSAC--SH--SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY--- 577 (710)
Q Consensus 510 ~p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 577 (710)
.| +..+...+..++ .. .+++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 355666666552 22 33899999999998754 45533344455588999999999999876521
Q ss_pred ---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 578 ---------TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 578 ---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
+.|..+...++......|+ .+.+.++++.+..|+++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 2355666566666666676 6889999999999998654
No 101
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=2.8e-08 Score=86.11 Aligned_cols=101 Identities=11% Similarity=-0.008 Sum_probs=88.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 544 GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
.+.|+ ...+..+...+.+.|++++|+..|++.- .+.+...|..+..+|...|+++.|...++++++++|+++..|..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 45666 6678888999999999999999998872 33478889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 005174 621 IANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
++.+|...|++++|.+.++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=1.1e-07 Score=92.79 Aligned_cols=174 Identities=9% Similarity=-0.084 Sum_probs=137.2
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 463 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
.+.....+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334455555555455667777888889999999999999998874 45 456788888889999999999999998875
Q ss_pred HhCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--Cc
Q 005174 542 IYGIFPQLEHF-ACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN--SG 616 (710)
Q Consensus 542 ~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 616 (710)
. .|+.... ......+.+.++.++|++.+++.- .+.+...+..+...+...|+++.|...++.+++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 6664333 333344667788888888887762 33467888999999999999999999999999999988 88
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
.+..++.+|...|+.++|...+++-
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 9999999999999999998877654
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=4.3e-08 Score=84.79 Aligned_cols=102 Identities=8% Similarity=-0.068 Sum_probs=90.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 544 GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
.+.|+ ...+..+...|.+.|++++|++.|++.- .. .+...|..+..++...|+++.|...++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 56776 6778888999999999999999999873 33 478899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 621 IANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
++.+|.+.|++++|.+.+++.....
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887643
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=4.6e-07 Score=83.94 Aligned_cols=172 Identities=8% Similarity=-0.096 Sum_probs=129.3
Q ss_pred HHHHHhhcC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC----cHHHHHHHHHHHH
Q 005174 466 AKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG----LVVEGQKQFERMT 540 (710)
Q Consensus 466 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 540 (710)
|.+.|++.. ..++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444433 2367777778888888888888888888888765 45666666666766 6 7888988888886
Q ss_pred HHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 005174 541 SIYGIFPQLEHFACMVDLYGR----AGLLNKAKEIITKMPYTPT----SAMWATLLGACQI----HRNTGIGEWAAEKLL 608 (710)
Q Consensus 541 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 608 (710)
+. -+...+..|..+|.. .+++++|++.|++.....+ ...+..|...|.. .+|.+.|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 246677778888877 7889999999888753333 6778888888877 778999999999998
Q ss_pred hhCCCCCchHHHHHHHHHhc-C-----CchHHHHHHHHHHhCCC
Q 005174 609 ETRPENSGYYVLIANMYAAT-G-----CWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 609 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 646 (710)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778888999998754 3 88999998888766543
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=1.7e-07 Score=103.52 Aligned_cols=180 Identities=9% Similarity=-0.035 Sum_probs=95.5
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhh
Q 005174 387 THLDCAEESAFLFREMF--------RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458 (710)
Q Consensus 387 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (710)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 45556666666666555 211 2233444455555556666666666666666553 445555566666666
Q ss_pred hcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQK 534 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 534 (710)
..|++++|...|++..+ | +...|..+..+|.+.|++++ +..|++..+. .| +...|..+..++...|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666655442 2 44555566666666666666 6666665553 23 23455555555666666666666
Q ss_pred HHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC--------HHHHHHHHHhC
Q 005174 535 QFERMTSIYGIFPQ-LEHFACMVDLYGRAGL--------LNKAKEIITKM 575 (710)
Q Consensus 535 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m 575 (710)
.|+++.+ +.|+ ...+..+..+|...|+ +++|.+.+..+
T Consensus 556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 6665542 3555 4455555555544332 44455555544
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=1.8e-07 Score=101.54 Aligned_cols=158 Identities=11% Similarity=0.011 Sum_probs=125.2
Q ss_pred cCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHH
Q 005174 460 SGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
.|++++|...|++..+. +...|..+...|...|++++|+..|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999988743 5778999999999999999999999999985 44 467888899999999999999999
Q ss_pred HHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 005174 536 FERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLLGACQIH---RNTGIGEWAAEKLLE 609 (710)
Q Consensus 536 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 609 (710)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++.- . +.+...+..+...+... |+.+.|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999875 566 7889999999999999999999999872 2 34678888999999999 999999999999999
Q ss_pred hCCCCCchHHHHH
Q 005174 610 TRPENSGYYVLIA 622 (710)
Q Consensus 610 ~~p~~~~~~~~l~ 622 (710)
.+|++...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999888777
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=1.9e-07 Score=78.21 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=94.5
Q ss_pred CCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHH
Q 005174 509 IKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMW 584 (710)
Q Consensus 509 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~ 584 (710)
+.|+ ...+......+.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|++.+++.- . +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4554 345667778888899999999999988764 665 7888889999999999999999988762 2 3467889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005174 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625 (710)
Q Consensus 585 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (710)
..+..++...|+++.|...++++++++|+++..+..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999988888777653
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.69 E-value=2.5e-07 Score=85.51 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLY 559 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 559 (710)
+.+...|...|++++|+..|++..+. .| +...+..+...+...|++++|...|+++.+. .|+ ...+..+..+|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 33888889999999999999998874 44 4667888888899999999999999998864 677 77888888888
Q ss_pred HhcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 560 GRAGL--LNKAKEIITKMPYTPTS--AMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 560 ~~~g~--~~~A~~~~~~m~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
...|. .+++...++... .|+. ..|..+..++...|+++.|...+++++++.|+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 76654 345566666654 3333 344455566777889999999999999999963
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.69 E-value=5.3e-07 Score=87.99 Aligned_cols=131 Identities=6% Similarity=-0.057 Sum_probs=111.9
Q ss_pred CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 005174 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLL 588 (710)
Q Consensus 511 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~ 588 (710)
.+...+..+...+...|++++|...|+++... .|+ ...+..+..+|.+.|++++|...+++.. ..|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34556777778889999999999999999875 776 7889999999999999999999999985 456665444433
Q ss_pred H-HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 589 G-ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 589 ~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
. .+...++.+.|...++++++.+|+++..+..++.+|...|++++|.+.+......
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3 3667788888999999999999999999999999999999999999999988763
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=2.8e-07 Score=91.04 Aligned_cols=221 Identities=9% Similarity=-0.023 Sum_probs=148.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHH
Q 005174 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467 (710)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (710)
..|++++|.+++++..+... .. .+...++++.|...+.. ....|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~----------------a~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK----------------AAVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH----------------HHHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH----------------HHHHHHHcCCHHHHH
Confidence 35677888888887765321 10 01113556666655443 344566778888888
Q ss_pred HHHhhcCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--hHHHHHHHHHhhccCcHHHHH
Q 005174 468 SVFDLMSRR-----D----EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ---IKPD--HVTMVAVLSACSHSGLVVEGQ 533 (710)
Q Consensus 468 ~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~ 533 (710)
..|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777765421 1 3477888888999999999999998876521 1122 3467777788888 9999999
Q ss_pred HHHHHHHHHhCCC--C-C-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHH
Q 005174 534 KQFERMTSIYGIF--P-Q-LEHFACMVDLYGRAGLLNKAKEIITKMP----YTPT----SAMWATLLGACQIHRNTGIGE 601 (710)
Q Consensus 534 ~~~~~~~~~~~~~--p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~g~~~~a~ 601 (710)
..|++....+.-. + . ..++..+..+|.+.|++++|++.|++.- ..++ ...+..+...+...|+++.|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887643111 1 1 4678889999999999999999998762 1122 225566666777789999999
Q ss_pred HHHHHHHhhCCCCCch-----HHHHHHHHHhcCCchHHHHH
Q 005174 602 WAAEKLLETRPENSGY-----YVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 602 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 637 (710)
..+++++ +.|+.... ...++..+ ..|+.+++.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 99876443 33445545 56776655553
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=1.8e-07 Score=83.85 Aligned_cols=75 Identities=8% Similarity=-0.064 Sum_probs=54.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 568 AKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN--SGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
|+..+++. ...| +...+..+..++...|+++.|...++.+++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44444443 1233 56777777778888888888888888888888764 4578888888888888888888776543
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=4.2e-07 Score=98.58 Aligned_cols=146 Identities=11% Similarity=0.033 Sum_probs=97.1
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHH
Q 005174 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKL 500 (710)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 500 (710)
.|++++|...++++++.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+...|...|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467778888888877764 556777888888888888888888888876542 566778888888888888888888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 005174 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA---GLLNKAKEIITKM 575 (710)
Q Consensus 501 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~---g~~~~A~~~~~~m 575 (710)
|++..+.. +-+...+..+..++...|++++|.+.+++..+. .|+ ...+..+..+|... |+.++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88877742 224567777777888888888888888887764 555 66777888888888 8888888888766
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=2.6e-05 Score=82.07 Aligned_cols=80 Identities=8% Similarity=-0.111 Sum_probs=38.0
Q ss_pred CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCC-chHHHHHHHHHH--hcC-CChHHHHHHHHHHHHh----cCCH
Q 005174 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD-VDFGRVVHSCID--ACH-EWSLFVHNALVSMYGK----FGQV 225 (710)
Q Consensus 154 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~--~g~-~~~~~~~~~li~~~~~----~g~~ 225 (710)
|+++.+..+|++.... .|+...|..-++-..+.++ .+....+|+... .|. +.+...|...+..+.. .|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5555666666655542 3455555444444433332 233445555444 232 2244555555554432 2445
Q ss_pred HHHHHHHhhc
Q 005174 226 DVARRLFDKM 235 (710)
Q Consensus 226 ~~A~~~~~~~ 235 (710)
+.+..+|++.
T Consensus 106 ~~vR~iy~rA 115 (493)
T 2uy1_A 106 EKIRNGYMRA 115 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566666655
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=2.7e-07 Score=79.21 Aligned_cols=101 Identities=14% Similarity=-0.033 Sum_probs=86.5
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 544 GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
.+.|+ ...+..+...+.+.|++++|+..|++.- .+.+...|..+..++...|+++.|...++++++++|+++..|..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34565 5667778888889999999999998762 23477888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 005174 621 IANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
++.+|...|++++|.+.++.....
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999887653
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=1.2e-05 Score=78.12 Aligned_cols=225 Identities=9% Similarity=0.027 Sum_probs=140.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCCchHHHhHHhhhh----hhc---
Q 005174 391 CAEESAFLFREMFRSGVEPNYV-TIASILPLCARVA--NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY----ARS--- 460 (710)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 460 (710)
..++|+.++..++.. .|+.. .++.--..+...+ .++++..++..++... +.+..+|+.-...+ .+.
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhcccc
Confidence 345666666666654 33332 2333333444455 6666666666666654 44445555444333 333
Q ss_pred CChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc------H
Q 005174 461 GKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGR--VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL------V 529 (710)
Q Consensus 461 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 529 (710)
++++++..+++.+.+ +|..+|+--.-.+.+.|+++ ++++.++++.+...+ |...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 677777777777653 35667777666777777777 888888888875433 45566555545555554 7
Q ss_pred HHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChHHHHH
Q 005174 530 VEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNK-AKEIITKMP-Y----TPTSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 530 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~-A~~~~~~m~-~----~p~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
+++.+.++.+... .|+ ...|+-+..++.+.|+..+ +..+.++.- . ..+...+..+..++...|+.++|.+
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 7777777777754 565 6677777777777776444 445666542 1 2366777777777777788888888
Q ss_pred HHHHHHh-hCCCCCchHHHHHH
Q 005174 603 AAEKLLE-TRPENSGYYVLIAN 623 (710)
Q Consensus 603 ~~~~~~~-~~p~~~~~~~~l~~ 623 (710)
+++.+.+ .+|.....|...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 8888775 67777666655443
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.64 E-value=5e-07 Score=84.67 Aligned_cols=187 Identities=13% Similarity=0.038 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC-chHHHhHHhhhhhhcCChhHHHHHHhhcCC--CC-h---hHHHH
Q 005174 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNE-HLLLWNSLVEMYARSGKVPEAKSVFDLMSR--RD-E---VTYTS 483 (710)
Q Consensus 411 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 483 (710)
...+......+...|++++|...+..+++..+..+ ....+..+..+|.+.|++++|...|+++.+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566778899999999999999998752222 246788889999999999999999998763 32 2 14555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhC
Q 005174 484 LIAGYGI------------------QGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYG 544 (710)
Q Consensus 484 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 544 (710)
+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999974 46543 2221110 001111111
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 545 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
.....+...|.+.|++++|+..|+++- ..|+ ...+..+..++...|+.+.|...++.+....|++.+++
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 122456788999999999999998872 2233 25678888999999999999999999999999876653
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=2.1e-06 Score=84.06 Aligned_cols=163 Identities=8% Similarity=-0.064 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHhhccCcHHHHHHHHHHHHHHhC--CCCC--hh
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-H----VTMVAVLSACSHSGLVVEGQKQFERMTSIYG--IFPQ--LE 550 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 550 (710)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566777888888888888888776432211 1 1233344556777889999998888765311 1112 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP----YTPT-----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE------NS 615 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 615 (710)
.++.+...|...|++++|+..+++.- ..|+ ..++..+...|...|+++.|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888899999999999888887652 1122 257788888899999999999999998877532 15
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKL-AKVRTCMR 642 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 642 (710)
..|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77666543
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.59 E-value=5.4e-07 Score=80.69 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=114.4
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-hhc
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA-CSH 525 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 525 (710)
...+...+...|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 45566677888999999999998874 26678888889999999999999999887763 3443332221111 112
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT---SAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~~~~~g~~~~a 600 (710)
.+...+|...+++..+. .|+ ...+..+..+|...|++++|+..++++ ...|+ ...+..+...+...|+.+.|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233467888887764 676 788889999999999999999999876 33443 56888888999999999999
Q ss_pred HHHHHHHHh
Q 005174 601 EWAAEKLLE 609 (710)
Q Consensus 601 ~~~~~~~~~ 609 (710)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887764
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=1e-06 Score=81.58 Aligned_cols=128 Identities=10% Similarity=-0.038 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
..+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...+++.... .|+ ...+..+..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 34556667777788888888888766 3556777777777777888888888888877764 444 666777777
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 558 LYGRAGLLNKAKEIITKMP-YTP-T----------------SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~-~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
+|.+.|++++|++.+++.- ..| + ...|..+..++...|+++.|...++.++++.|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777776651 111 1 256666666777777777777777777777663
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=9.7e-06 Score=78.71 Aligned_cols=212 Identities=8% Similarity=0.038 Sum_probs=167.7
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC--ChhHHHHHHhhcCC---CChhHHHHHHHHH----Hhc---CC
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG--KVPEAKSVFDLMSR---RDEVTYTSLIAGY----GIQ---GE 493 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~ 493 (710)
..++|..+...++..+ +.+..+|+.--..+...| +++++.+.++.+.. .+...|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3467888888888875 667788888888888888 99999999998874 3566777765555 555 78
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHH--HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC------
Q 005174 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV--EGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL------ 564 (710)
Q Consensus 494 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~------ 564 (710)
+++++.+++++.+.. +-|...|..-.-.+.+.|.++ ++.++++++.+. .|. ...|+.-..++.+.|.
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhh
Confidence 999999999999853 226667777766677778887 999999999875 555 6677777777777776
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhhC---CCCCchHHHHHHHHHhcCCchHHHHHH
Q 005174 565 LNKAKEIITKMP--YTPTSAMWATLLGACQIHRNT-GIGEWAAEKLLETR---PENSGYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 565 ~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
++++++.++++- .+-|...|+-+...+...|+. +.....++.+.+++ |.++..+..++++|.+.|+.++|.+++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 899999988762 344899999998888887774 33556777777776 788889999999999999999999999
Q ss_pred HHHHh
Q 005174 639 TCMRD 643 (710)
Q Consensus 639 ~~m~~ 643 (710)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=2.9e-06 Score=83.14 Aligned_cols=160 Identities=8% Similarity=-0.042 Sum_probs=119.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCChH----HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHH
Q 005174 483 SLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHV----TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFA 553 (710)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 553 (710)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888899999999999988732 222321 2334566667778999999999998863211222 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchH
Q 005174 554 CMVDLYGRAGLLNKAKEIITKMP-------Y-TPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYY 618 (710)
Q Consensus 554 ~li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 618 (710)
.+...|...|++++|+..++++- . .+. ..++..+...|...|+++.|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999988887762 1 111 2377888899999999999999999998875433 5689
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHH
Q 005174 619 VLIANMYAATGC-WDKLAKVRTCMR 642 (710)
Q Consensus 619 ~~l~~~~~~~g~-~~~A~~~~~~m~ 642 (710)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 599999887664
No 122
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.56 E-value=2.1e-06 Score=79.15 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=78.8
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhc
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSH 525 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 525 (710)
.+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ..++..+..++..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 34466667777777777777776542 25667777777777777777777777777763 343 4556666655544
Q ss_pred cCc--HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005174 526 SGL--VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLG 589 (710)
Q Consensus 526 ~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 589 (710)
.|. .+.+...++... ...|....+..+..++...|++++|+..|++. ...|+......+..
T Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 433 333444444432 11222223344555666677777777777765 45676655555443
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=8.1e-07 Score=79.56 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=79.9
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCh--
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGA-CQIHRNT-- 597 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~-~~~~g~~-- 597 (710)
...|++++|...++..... .|+ ...+..+..+|...|++++|+..+++.- .+.+...|..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456666777777666654 344 5667777777777777777777776652 12355666666666 6677776
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+.|...++.+++.+|+++..+..++.+|...|++++|.+.++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77888888888888888788888888888888888888877776653
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=7.9e-07 Score=74.40 Aligned_cols=119 Identities=14% Similarity=-0.002 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+.+.|++++|+..|++.- .+.+...|..+..++...|+++.|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456777788888888888888888762 23467888888888999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHH
Q 005174 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~ 687 (710)
..|++++|.+.+++...... . ....|....+...+..+...
T Consensus 84 ~~~~~~~A~~~~~~al~~~p----~----------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDA----E----------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHH----H----------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCc----c----------------cCCchhHHHHHHHHHHHHHh
Confidence 99999999999888765321 0 01336677777777665543
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=1.4e-06 Score=72.29 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLG 589 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~ 589 (710)
...+..+...+...|++++|..+++++... .|+ ...+..+...+.+.|++++|...++++. .+.+..+|..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 345666666777777777777777777654 343 6667777778888888888887777762 2346677888888
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
.+...|+++.|...++.++++.|+++..+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888899999999999999999988888888888877654
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=2.7e-06 Score=78.72 Aligned_cols=131 Identities=12% Similarity=-0.036 Sum_probs=96.4
Q ss_pred HHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc
Q 005174 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528 (710)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 528 (710)
.+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 355666777788888888888888877777888888888888888888888888877642 2345677777778888888
Q ss_pred HHHHHHHHHHHHHHhC-------------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 005174 529 VVEGQKQFERMTSIYG-------------IFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT 580 (710)
Q Consensus 529 ~~~a~~~~~~~~~~~~-------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 580 (710)
+++|...|++..+... ..|+ ...+..+..+|.+.|++++|.+.+++. ...|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888776311 1122 367777888888888888888888776 34444
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=1.9e-06 Score=75.89 Aligned_cols=125 Identities=7% Similarity=-0.035 Sum_probs=93.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~ 591 (710)
.+..+...+...|++++|...|++.... .|+ ...+..+..+|...|++++|.+.+++.- .+.+...|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666777777777777777654 443 6667777777788888888887777652 233567788888888
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHH--HHHhcCCchHHHHHHHHHH
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIAN--MYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~ 642 (710)
...|+++.|...+++++++.|++...+..+.. .+.+.|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88999999999999999999988877754444 4788899999999887654
No 128
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=8e-06 Score=75.47 Aligned_cols=158 Identities=8% Similarity=-0.044 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC----chHHHHHHHHHHHHhCCCCCchHHH
Q 005174 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA----NLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
+..++..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....+.+ +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g----~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG----SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 45556666666666677777777777766654 33444444444554 4 6666676666665554 44555
Q ss_pred hHHhhhhhh----cCChhHHHHHHhhcCCCC-----hhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHH
Q 005174 451 NSLVEMYAR----SGKVPEAKSVFDLMSRRD-----EVTYTSLIAGYGI----QGEGRVALKLFEEMNKNQIKPDHVTMV 517 (710)
Q Consensus 451 ~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 517 (710)
..|..+|.. .+++++|...|++..+.+ +.++..|...|.. .+++++|+.+|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 666666665 667777777777766543 4667777777776 66777777777777765 22333455
Q ss_pred HHHHHhhcc-C-----cHHHHHHHHHHHHHH
Q 005174 518 AVLSACSHS-G-----LVVEGQKQFERMTSI 542 (710)
Q Consensus 518 ~ll~a~~~~-g-----~~~~a~~~~~~~~~~ 542 (710)
.|...|... | +.++|..+|+...+.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 555555432 2 677777777777654
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=1.8e-06 Score=72.33 Aligned_cols=117 Identities=11% Similarity=-0.035 Sum_probs=89.2
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLG 589 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~ 589 (710)
...+..+...+...|++++|...+++.... .|+ ...+..+...|...|++++|.+.+++.. .+.+...|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 345556666677777777777777777654 343 6677777778888888888887777652 2335677888888
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (710)
.+...|+++.|...++.++++.|+++..+..++.++.+.|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8888999999999999999999998888999999998888753
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=1.8e-06 Score=72.74 Aligned_cols=115 Identities=9% Similarity=-0.041 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLG 589 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~ 589 (710)
...+..+...+...|++++|...+++... ..|+ ...+..+..+|...|++++|++.+++.. .+.+...|..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34555555566666666666666666553 2443 5566666666666777777766666552 2235667777777
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
++...|+++.|...++++++++|++...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888877664
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.45 E-value=1.4e-06 Score=87.14 Aligned_cols=158 Identities=14% Similarity=0.000 Sum_probs=108.9
Q ss_pred CChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537 (710)
Q Consensus 461 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (710)
+++++|...|+...+ + +...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~-- 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA-- 191 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH--
Confidence 344444444443321 1 3446666666777777777777777776653 2322100 00111110
Q ss_pred HHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 538 RMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 538 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.|. ...|..+..+|.+.|++++|+..+++.- .+.+...|..+..++...|+++.|...++++++++|++
T Consensus 192 --------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 192 --------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred --------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 111 3567888888888999999988888772 23467888889999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchHH-HHHHHHH
Q 005174 615 SGYYVLIANMYAATGCWDKL-AKVRTCM 641 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m 641 (710)
+..+..++.++.+.|++++| .+.++.|
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 4455555
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=4.6e-07 Score=88.10 Aligned_cols=190 Identities=12% Similarity=-0.024 Sum_probs=121.4
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMS--RR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLS 521 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 521 (710)
+...+..+...|.+.|++++|...|++.. .| +...|..+..+|...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34456666677777777777777777654 22 5667777788888888888888888887764 34 3556777777
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a 600 (710)
++...|++++|...|++..+. .|+ ...+...+....+.++...... .......++......+ ..+ ..|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 788888888888888877654 332 1111112222222221112111 2222333344443333 222 26888888
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 005174 601 EWAAEKLLETRPENSGYYVLIANMYAAT-GCWDKLAKVRTCMRD 643 (710)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 643 (710)
.+.++.+++++|++......+..++.+. +++++|.+++....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888999998877777777777777 678999999887654
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.43 E-value=1.3e-06 Score=86.14 Aligned_cols=197 Identities=8% Similarity=-0.061 Sum_probs=151.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005174 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502 (710)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (710)
..|++++|.+++.+..+.. +.. .+...+++++|...|.. ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 3577888999988887754 211 12125889999888776 4677889999999999999
Q ss_pred HHHHC----CCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 503 EMNKN----QIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI--FPQ--LEHFACMVDLYGRAGLLNKAKEIIT 573 (710)
Q Consensus 503 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 573 (710)
+..+. |-.+. ..+|..+...|...|++++|...|++....+.- .|. ..++..+..+|.+ |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87753 11111 347888888899999999999999988765311 122 4678889999988 99999999998
Q ss_pred hCC----C--CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCCchHHHHHHH
Q 005174 574 KMP----Y--TP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS------GYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 574 ~m~----~--~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
+.- . .+ ...++..+...+...|+++.|...+++++++.|++. ..+..++.++...|++++|.+.++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 762 1 11 145788888999999999999999999999877553 367778888999999999999998
Q ss_pred HHH
Q 005174 640 CMR 642 (710)
Q Consensus 640 ~m~ 642 (710)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 876
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.42 E-value=3e-05 Score=75.82 Aligned_cols=159 Identities=9% Similarity=-0.079 Sum_probs=119.4
Q ss_pred HHhhhhhhcCChhHHHHHHhhcCCC---Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHH
Q 005174 452 SLVEMYARSGKVPEAKSVFDLMSRR---DE------VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-PD----HVTMV 517 (710)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 517 (710)
..+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788899999999999886542 11 13334667777788999999999999884322 23 22688
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHh----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-HHHH
Q 005174 518 AVLSACSHSGLVVEGQKQFERMTSIY----GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-------YTPT-SAMW 584 (710)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~ 584 (710)
.+...|...|++++|..+|+++.+.. +..+. ..++..+...|.+.|++++|++.+++.- ..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999999987532 12222 4478899999999999999999988761 1222 5678
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHhh
Q 005174 585 ATLLGACQIHRN-TGIGEWAAEKLLET 610 (710)
Q Consensus 585 ~~l~~~~~~~g~-~~~a~~~~~~~~~~ 610 (710)
..+..++...|+ ++.|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888888999994 69999988888765
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=3.5e-06 Score=79.79 Aligned_cols=136 Identities=14% Similarity=-0.021 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLY 559 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 559 (710)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... -.|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 44566777888888888888887764 355444444555677888888888888755431 1121 23577788888
Q ss_pred HhcCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 560 GRAGLLNKAKEIITKMPYT---PT--SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~---p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
.+.|++++|+..|++.... |. ...+..+..++...|+.++|...++++.+.+|+ +..+..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8899999999888877311 42 336667777888889999999999999999887 55555443
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=5.7e-06 Score=80.98 Aligned_cols=163 Identities=9% Similarity=-0.058 Sum_probs=117.2
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCCC---Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--h
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRR---DE------VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK---PD--H 513 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~ 513 (710)
..+...+..+...|++++|.+.+.+..+. .. ..+..+...+...|++++|+..|++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667778888898888888754321 11 23444566677888999999999988763211 11 3
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-C
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-----LEHFACMVDLYGRAGLLNKAKEIITKMP-------YTP-T 580 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-~ 580 (710)
.+++.+...|...|++++|..+++++.+.....|+ ..++..+...|.+.|++++|++.+++.- ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888899999999999999988743222333 2578889999999999999999988752 111 1
Q ss_pred HHHHHHHHHHHHhcCChHHH-HHHHHHHHhh
Q 005174 581 SAMWATLLGACQIHRNTGIG-EWAAEKLLET 610 (710)
Q Consensus 581 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 610 (710)
..+|..+...+...|+.+.| ...+++++++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56778888889999999999 7777777654
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=1.9e-06 Score=69.89 Aligned_cols=98 Identities=11% Similarity=-0.051 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE--NSGYYVLIANM 624 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 624 (710)
...+..+...+.+.|++++|...+++.- .+.+...|..+...+...|+++.|...+++++++.|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5567777888888888888888887762 2346777888888888899999999999999999998 88899999999
Q ss_pred HHhc-CCchHHHHHHHHHHhCCC
Q 005174 625 YAAT-GCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 625 ~~~~-g~~~~A~~~~~~m~~~~~ 646 (710)
|... |++++|.+.++.......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999888776443
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=4.5e-06 Score=73.55 Aligned_cols=102 Identities=18% Similarity=0.047 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGA 590 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~ 590 (710)
..+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++.- ..| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444555555555555555555555543 343 4455555555555555555555555441 112 34455555555
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
+...|+++.|...++++++++|+++..|
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 5555555555555555555555555443
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=7.4e-06 Score=67.01 Aligned_cols=93 Identities=8% Similarity=-0.026 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (710)
..+..+...+...|++++|...+++.- .+.+...|..+...+...|+++.|...++.+++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555555566666666666665541 122455555566666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHH
Q 005174 628 TGCWDKLAKVRTCMR 642 (710)
Q Consensus 628 ~g~~~~A~~~~~~m~ 642 (710)
.|++++|.+.++...
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 666666666665554
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=8.1e-07 Score=75.77 Aligned_cols=62 Identities=15% Similarity=-0.027 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh-------CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLET-------RPENSGYY----VLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..|..+..++...|++++|...+++++++ +|+++..| ..++.+|...|++++|++.+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888888899999999999999998 99999999 9999999999999999999988765
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=7.2e-06 Score=69.51 Aligned_cols=97 Identities=5% Similarity=-0.085 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005174 548 QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625 (710)
Q Consensus 548 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (710)
+...+..+...+...|++++|+..|++.- .+.+...|..+...+...|+++.|...++.+++++|+++..|..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 36677788888888888888888887762 2335778888888888999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 005174 626 AATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 626 ~~~g~~~~A~~~~~~m~~~ 644 (710)
...|++++|.+.++.....
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999998887653
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=1.9e-06 Score=71.44 Aligned_cols=94 Identities=10% Similarity=-0.076 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (710)
.+..+...+.+.|++++|+..+++.- ..| +...|..+..++...|+.+.|...++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45567788888999999999888872 234 7788888888999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhC
Q 005174 629 GCWDKLAKVRTCMRDL 644 (710)
Q Consensus 629 g~~~~A~~~~~~m~~~ 644 (710)
|++++|.+.+++....
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998887653
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.32 E-value=6.9e-06 Score=69.05 Aligned_cols=95 Identities=13% Similarity=0.010 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 677889999999999999999999987 3334 77889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHh
Q 005174 627 ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~ 643 (710)
+.|++++|.+.+++...
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999988765
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=4.5e-06 Score=73.34 Aligned_cols=85 Identities=12% Similarity=-0.002 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCe
Q 005174 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660 (710)
Q Consensus 581 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 660 (710)
...|..+..++...|+++.|...++.+++++|+++..|..++.+|...|++++|.+.++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~----------------- 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR----------------- 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh-----------------
Confidence 457788888899999999999999999999999999999999999999999999999888764
Q ss_pred EEEEeeCCCCCcchh-hHHHHHHHHHHHHHHc
Q 005174 661 FSPFLVDDTSNVQAQ-EIYPLLGGLTELMKDA 691 (710)
Q Consensus 661 ~~~~~~~~~~~p~~~-~~~~~l~~l~~~~~~~ 691 (710)
.+|+.. .+...|..+...+++.
T Consensus 126 ---------l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 126 ---------NHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp ---------HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ---------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 356665 6777787777777643
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=1.9e-06 Score=74.35 Aligned_cols=104 Identities=8% Similarity=-0.066 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWATLLG 589 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~ 589 (710)
...+..+...+...|++++|...|+..... .|+ ...|..+..+|.+.|++++|++.|++.- .. .+...|..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 335556666777888888888888887764 564 6777788888888888888888887762 22 35677778888
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
++...|+++.|...+++++++.|+++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 888889999999999999998888776643
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=1e-05 Score=66.90 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|...++.+.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999873 33467888999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHh
Q 005174 627 ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~ 643 (710)
..|++++|.+.++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999998875
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=1.2e-05 Score=73.60 Aligned_cols=128 Identities=10% Similarity=-0.024 Sum_probs=61.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC-C----H
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIY---GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP----YTP-T----S 581 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p-~----~ 581 (710)
.+..+...+...|++++|...+++..... +..|. ...+..+...|...|++++|.+.+++.- ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 34444444444444444444444443311 11111 2334445555555555555555444331 011 1 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--C----CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPE--N----SGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..+..+...+...|+++.|...+++.+++.+. + ...+..++.++...|++++|.+.+++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 23444555555566666666666555544211 1 2234667777777777777777666554
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.29 E-value=0.00038 Score=68.27 Aligned_cols=227 Identities=11% Similarity=0.037 Sum_probs=126.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc-C
Q 005174 385 GYTHLDCAEESAFLFREMFRSGVEPNY-VTIASILPLCARVA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS-G 461 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 461 (710)
...+.+..++|++++.+++.. .|+. ..++.--..+...+ .++++..++..++... +.+..+|+.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcC
Confidence 334445556777777777765 3433 33344334444455 4777777777777664 56666676666666665 5
Q ss_pred -ChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc-
Q 005174 462 -KVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGR--------VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL- 528 (710)
Q Consensus 462 -~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 528 (710)
+++++.++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 777888888777754 4456655554554444444 777777777775322 55566655555555554
Q ss_pred ------HHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCH--------------------HHHHHHHHhCC-C---
Q 005174 529 ------VVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLL--------------------NKAKEIITKMP-Y--- 577 (710)
Q Consensus 529 ------~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~-~--- 577 (710)
++++.+.++++... .|+ ...|+-+-..+.+.|+. .+..++..++. .
T Consensus 218 ~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 56667777666653 555 55566655566555543 22233333331 1
Q ss_pred ----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hhCCCCCchHH
Q 005174 578 ----TPTSAMWATLLGACQIHRNTGIGEWAAEKLL-ETRPENSGYYV 619 (710)
Q Consensus 578 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~ 619 (710)
.+....+..|+..|...|+.++|.++++.+. +.+|-....|.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2344555555555555555555555555554 44554433333
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.28 E-value=4.9e-06 Score=74.38 Aligned_cols=126 Identities=9% Similarity=0.055 Sum_probs=92.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH-HHhcCCH-
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL-YGRAGLL- 565 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~- 565 (710)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+++... .|+ ...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 44577778888888777642 235567777777888888888888888888764 444 6677777777 7788887
Q ss_pred -HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 566 -NKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 566 -~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
++|...+++.- ..| +...|..+...+...|+++.|...++.++++.|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 88888888762 233 567788888888899999999999999999999876544
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.28 E-value=4.6e-06 Score=79.01 Aligned_cols=180 Identities=8% Similarity=-0.062 Sum_probs=127.9
Q ss_pred cCChhHHHHHHhhcCC--C-ChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCh----------------
Q 005174 460 SGKVPEAKSVFDLMSR--R-DEVTYTSL-------IAGYGIQGEGRVALKLFEEMNKNQIKPDH---------------- 513 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------- 513 (710)
.++...|.+.|.++.+ | ....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccccc
Confidence 4556666666665542 2 33455555 3444444555555555554443 23321
Q ss_pred ------HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HH
Q 005174 514 ------VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS----AM 583 (710)
Q Consensus 514 ------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~~ 583 (710)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1223355667889999999999998864 3576337777788999999999999999977544433 36
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETR--PE-NSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+..+..++...|++++|...+++...-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7778889999999999999999998543 44 4557889999999999999999999999863
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=1.6e-05 Score=64.95 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGA 590 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~ 590 (710)
..+..+...+...|++++|...++..... .|+ ...+..+..+|.+.|++++|...+++.- .+.+...|..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666677777766666653 343 5566666777777777777777766651 22356667777777
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (710)
+...|+++.|...++.+++++|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 77788888888888888888887777666665553
No 152
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.26 E-value=8.1e-06 Score=70.34 Aligned_cols=97 Identities=6% Similarity=-0.041 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 591 (710)
.+..+...+.+.|++++|...|+++... .|+ ...|..+..+|.+.|++++|++.|++.- ..| +...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3444445555566666666666665543 444 5555566666666666666666665551 222 445566666666
Q ss_pred HhcCChHHHHHHHHHHHhhCCCC
Q 005174 592 QIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
...|+++.|...+++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 66666666666666666666653
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=1.4e-05 Score=66.81 Aligned_cols=95 Identities=9% Similarity=-0.042 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+...|++++|.+.+++.- .+.+...|..+...+...|+++.|...++.+++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 5678888999999999999999999872 33467888899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHh
Q 005174 627 ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~ 643 (710)
..|++++|.+.++....
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999988765
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.6e-05 Score=68.27 Aligned_cols=94 Identities=12% Similarity=-0.025 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|+++.|...++.++++.|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444444455555555555555443 22333 3444444455555555555555555555555555555555555
Q ss_pred HHHhcCCchHHHHHHHHHH
Q 005174 624 MYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 624 ~~~~~g~~~~A~~~~~~m~ 642 (710)
+|...|++++|.+.+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555443
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=1.1e-05 Score=73.86 Aligned_cols=152 Identities=11% Similarity=-0.006 Sum_probs=94.0
Q ss_pred hcCChhHHHH---HHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-ChHHHHHHHHHhhccCcHH
Q 005174 459 RSGKVPEAKS---VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK----NQIKP-DHVTMVAVLSACSHSGLVV 530 (710)
Q Consensus 459 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 530 (710)
..|++++|.+ .+..-.......+..+...|...|++++|+..+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223455667777777777777777777777655 11122 2335666666777788888
Q ss_pred HHHHHHHHHHHHhCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCh
Q 005174 531 EGQKQFERMTSIYGIFP-Q----LEHFACMVDLYGRAGLLNKAKEIITKMP----YTPT----SAMWATLLGACQIHRNT 597 (710)
Q Consensus 531 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~g~~ 597 (710)
+|...+++......-.+ + ...+..+...+...|++++|...+++.- ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888777665421122 1 3456777778888888888877776651 1112 22346666777888888
Q ss_pred HHHHHHHHHHHhh
Q 005174 598 GIGEWAAEKLLET 610 (710)
Q Consensus 598 ~~a~~~~~~~~~~ 610 (710)
+.|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877777765
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=1.4e-05 Score=70.22 Aligned_cols=94 Identities=17% Similarity=0.053 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
+...|..+...+...|++++|+..|++..+. .| +...|..+..++...|++++|...|++..+. .|+ ...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456667777777777777777777777764 33 4556667777777777777777777777654 555 667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 005174 555 MVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m 575 (710)
+..+|.+.|++++|++.|++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777765
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.25 E-value=7.3e-06 Score=70.13 Aligned_cols=106 Identities=11% Similarity=-0.053 Sum_probs=73.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~ 591 (710)
.+..+...+...|++++|...|+..... .|+ ...|..+..+|.+.|++++|+..|++.- . +.+...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4444555666777777777777777653 554 6667777777777777777777777652 2 23556677777778
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
...|+++.|...++.++++.|+++........
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 88888888888888888888877766554433
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.4e-05 Score=66.58 Aligned_cols=108 Identities=7% Similarity=-0.093 Sum_probs=66.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 591 (710)
.+......+.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++.- ..| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444555556666666666666666543 343 5566666666666666666666666551 222 456666666777
Q ss_pred HhcCChHHHHHHHHHHHhhC------CCCCchHHHHHHHH
Q 005174 592 QIHRNTGIGEWAAEKLLETR------PENSGYYVLIANMY 625 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 625 (710)
...|+++.|...++++++++ |++...+..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 77777777777777777777 66655555555443
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=5.3e-06 Score=87.14 Aligned_cols=117 Identities=7% Similarity=-0.028 Sum_probs=95.6
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNT 597 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~ 597 (710)
..+...|++++|.+.+++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778889999888888764 666 778888999999999999999988877 2334 677888999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANM--YAATGCWDKLAKVRTC 640 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 640 (710)
++|...++++++++|+++..+..++.+ +.+.|++++|.+.++.
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999988 8899999999998663
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=3.1e-06 Score=77.37 Aligned_cols=148 Identities=8% Similarity=-0.087 Sum_probs=70.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--------------hhHH
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--------------LEHF 552 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--------------~~~~ 552 (710)
.....|+++++.+.|+.-.+. .......+..+...+...|++++|...|++......-.|+ ...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334445555555444422211 0012234445555566666666666666666543111111 1455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
..+..+|.+.|++++|+..+++.- .+.+...|..+..++...|+++.|...++++++++|+++..+..++.++...|+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 555555666666666665555541 122445555555555556666666666666666666655555555555555555
Q ss_pred chHHH
Q 005174 631 WDKLA 635 (710)
Q Consensus 631 ~~~A~ 635 (710)
.+++.
T Consensus 172 ~~~~~ 176 (198)
T 2fbn_A 172 ARKKD 176 (198)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 44444
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.20 E-value=1.1e-05 Score=73.54 Aligned_cols=144 Identities=10% Similarity=0.013 Sum_probs=101.2
Q ss_pred hhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----------------H
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH----------------V 514 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~ 514 (710)
+......|+++++.+.|+.-... ....+..+...+...|++++|+..|++..+.... +. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHH
Confidence 33444556666666666543322 4557888889999999999999999999884221 22 6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 591 (710)
.+..+..++...|++++|...++..... .|+ ...+..+..+|...|++++|++.|++.- ..| +...+..+...+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 7788888899999999999999999875 565 7889999999999999999999998872 334 566777777666
Q ss_pred HhcCChHHHH
Q 005174 592 QIHRNTGIGE 601 (710)
Q Consensus 592 ~~~g~~~~a~ 601 (710)
...++.+.+.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=4e-05 Score=67.23 Aligned_cols=128 Identities=7% Similarity=-0.068 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.... .|+ ...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 356667777778888888888888877642 224666777777778888888888888887764 454 667778888
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHH--HHHHHhcCChHHHHHHHHHHHhh
Q 005174 558 LYGRAGLLNKAKEIITKMP-YTP-TSAMWATL--LGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
+|.+.|++++|.+.+++.. ..| +...+..+ +..+...|+++.|...++...++
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888888888888887762 222 44444333 33366677777777777665543
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=2.9e-05 Score=66.62 Aligned_cols=109 Identities=7% Similarity=-0.079 Sum_probs=62.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLL 588 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~ 588 (710)
.+..+...+...|++++|...|++..+ +.|+ ...+..+..+|...|++++|++.+++.- . +.+...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444444444555555555554442 2333 3445555555666666666666555441 1 22455666666
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
.++...|+++.|...++++++++|++...+..+..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777666665555543
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=9.6e-06 Score=67.74 Aligned_cols=94 Identities=10% Similarity=-0.063 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-------hHHH
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG-------YYVL 620 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 620 (710)
..+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|+++.|...++++++++|++.. .|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34667788888888888888888776 2233 6778888888889999999999999999998887653 6777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 005174 621 IANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
++.+|...|++++|++.+++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999887653
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=0.00048 Score=67.21 Aligned_cols=192 Identities=9% Similarity=0.022 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCC--hhHHHHHHhhcCC---CChhHHHHHHHHHHhcCC-hHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK--VPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGE-GRVALKL 500 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~ 500 (710)
++++..++..++... +.+..+|+.-.-.+.+.|+ ++++..+++.+.+ +|-.+|+--...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456667777777664 5666677766666666663 6777777777663 366677776666677777 4788888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHhhcc--------------CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc---
Q 005174 501 FEEMNKNQIKPDHVTMVAVLSACSHS--------------GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA--- 562 (710)
Q Consensus 501 ~~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--- 562 (710)
+.++.+..+. |...|+.....+.+. +.++++.+.+...... .|+ ...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCc
Confidence 8888775432 455555444333332 4467777777777653 565 55665555555554
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005174 563 --------GLLNKAKEIITKM-PYTPTSAMWATLLGAC-----QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625 (710)
Q Consensus 563 --------g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (710)
+.++++++.++++ ...||. .|..+..+. ...|..+.....+.++.+++|...+.|..+..-+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3466777777666 234543 343222221 2345666677777788888887766666555443
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.13 E-value=0.00021 Score=70.12 Aligned_cols=212 Identities=11% Similarity=0.002 Sum_probs=153.4
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC-ChhHHHHHHhhcCCC---ChhHHHHHHHHHHhc-C-ChHHHHH
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG-KVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQ-G-EGRVALK 499 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~-g-~~~~A~~ 499 (710)
..++|.++...++... +.+..+|+.--..+...| .++++..+++.+... +..+|+.-...+... + ++++++.
T Consensus 69 ~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3457888888888875 667778888877888888 599999999988743 667888877777776 7 8999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHhhccCcHH--------HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC------
Q 005174 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVV--------EGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL------ 564 (710)
Q Consensus 500 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~------ 564 (710)
+++++.+...+ |...|+.-.-.+.+.|.++ ++.+.++++.+. .|+ ...|+....++.+.+.
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchH
Confidence 99999975322 5666665554455545555 889999999875 565 7778888888888876
Q ss_pred -HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHH-----------------HHHHHHHHHhhC---------CCCC
Q 005174 565 -LNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGI-----------------GEWAAEKLLETR---------PENS 615 (710)
Q Consensus 565 -~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~-----------------a~~~~~~~~~~~---------p~~~ 615 (710)
++++++.++++- .+-|...|+-+-..+...|+... -..+.+.+.++. +..+
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 788998887762 33488899888777777665410 112233333331 3445
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
-....|+++|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 5678999999999999999999998863
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.11 E-value=2.5e-05 Score=66.08 Aligned_cols=99 Identities=7% Similarity=-0.142 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 005174 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLL 588 (710)
Q Consensus 512 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~ 588 (710)
+...+..+...+...|++++|...|+..... .|+ ...+..+..+|...|++++|+..+++.- .+.+...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3455566666666666666666666666553 344 5566666667777777777776666552 223456667777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.++...|+++.|...++.++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7777777777777777777777666
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=1.2e-05 Score=67.32 Aligned_cols=90 Identities=12% Similarity=0.044 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHH
Q 005174 554 CMVDLYGRAGLLNKAKEIITKMP-YTPT-S---AMWATLLGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMY 625 (710)
Q Consensus 554 ~li~~~~~~g~~~~A~~~~~~m~-~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 625 (710)
.+...+.+.|++++|.+.|++.. ..|+ . ..+..+..++...|+++.|...++.+++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34455556666666666665541 1122 2 355556666666777777777777777777766 55567777777
Q ss_pred HhcCCchHHHHHHHHHHh
Q 005174 626 AATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 626 ~~~g~~~~A~~~~~~m~~ 643 (710)
...|++++|.+.++....
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777666554
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=2.7e-05 Score=65.03 Aligned_cols=94 Identities=12% Similarity=-0.037 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------CchHHH
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN-------SGYYVL 620 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 620 (710)
..+..+...+...|++++|...+++.- .+.+...|..+...+...|+++.|...++.++++.|++ +..|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456677777888888888888887662 23466777788888888889998999999888887766 778899
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 005174 621 IANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
++.+|...|++++|.+.++....
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=1.8e-05 Score=78.96 Aligned_cols=96 Identities=13% Similarity=-0.059 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT----------------SAMWATLLGACQIHRNTGIGEWAAEKLLETR 611 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 611 (710)
...+..+...|.+.|++++|+..|++.- ..|+ ...|..+..++...|+++.|...++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4456666666667777777766666551 1222 4788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 612 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
|+++..|..++.+|...|++++|.+.+++....
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988763
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=3.7e-05 Score=80.34 Aligned_cols=161 Identities=14% Similarity=0.016 Sum_probs=108.9
Q ss_pred hcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
..+++++|...|+...+. ....|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~- 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA- 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-
Confidence 334455555555433321 3446777777788888888888888877762 2221100 0 011100
Q ss_pred HHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 536 FERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 536 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
. .+. ...|..+..+|.+.|++++|+..+++.- .+.+...|..+..+|...|+++.|...++++++++|
T Consensus 312 ---~------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 312 ---S------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp ---H------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred ---H------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 0 111 3568888889999999999999888872 234678888999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHH-HHHHH
Q 005174 613 ENSGYYVLIANMYAATGCWDKLAKV-RTCMR 642 (710)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~ 642 (710)
++...+..++.++.+.|++++|.+- ++.|.
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753 44443
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=4.4e-05 Score=79.42 Aligned_cols=163 Identities=6% Similarity=-0.124 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChH----HHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC-hh
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHV----TMVAVLSACSHSGLVVEGQKQFERMTSIY---GIFPQ-LE 550 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 550 (710)
++..+...|...|++++|.+++.++... +..++.. ..+.+-..+...|+.+++..+++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3567788888888888888888877652 1112221 22223333455688888888887765432 33333 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC---C----C
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP-------YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE---N----S 615 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~ 615 (710)
++..+...|...|++++|..++++.. .++ ...++..++..|...|+++.|...+++++.+.+. . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77888999999999999998887651 122 2446777778899999999999999888876432 2 3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..+..++.++...|++++|...+....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778888888899999988766553
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.00067 Score=66.20 Aligned_cols=177 Identities=10% Similarity=-0.030 Sum_probs=128.8
Q ss_pred hhHHHHHHhhcCC---CChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc-HHHHHHHH
Q 005174 463 VPEAKSVFDLMSR---RDEVTYTSLIAGYGIQG--EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL-VVEGQKQF 536 (710)
Q Consensus 463 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 536 (710)
++++..+++.+.. ++..+|+.-...+...+ .+++++.+++++.+...+ |...|+.-...+.+.|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777653 47778888877888877 489999999999986433 66677766666677777 68999999
Q ss_pred HHHHHHhCCCCC-hhHHHHHHHHHHhc--------------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc-----
Q 005174 537 ERMTSIYGIFPQ-LEHFACMVDLYGRA--------------GLLNKAKEIITKMP--YTPTSAMWATLLGACQIH----- 594 (710)
Q Consensus 537 ~~~~~~~~~~p~-~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~----- 594 (710)
+.+.+. .|+ ...|+....++.+. +.++++++.+++.- .+-|...|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999875 565 66777666666655 45788888888772 334888898666655544
Q ss_pred ------CChHHHHHHHHHHHhhCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHh
Q 005174 595 ------RNTGIGEWAAEKLLETRPENSGYYVLIANMYA---ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 595 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~ 643 (710)
+-++.+.+.++.+++++|++...+..++.+.. ..|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 45778899999999999998665555544332 35666777777777664
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=3.9e-05 Score=80.52 Aligned_cols=119 Identities=8% Similarity=-0.018 Sum_probs=74.7
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhc
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSH 525 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 525 (710)
+..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34455566777777777777776542 25667777777777777777777777777764 33 35566666677777
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH--HHhcCCHHHHHHHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL--YGRAGLLNKAKEIIT 573 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 573 (710)
.|++++|.+.++++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777777654 444 3444444444 666677777777766
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.99 E-value=2.8e-05 Score=75.39 Aligned_cols=48 Identities=6% Similarity=-0.019 Sum_probs=31.1
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc-CCHHHHHHHHHhCC
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA-GLLNKAKEIITKMP 576 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 576 (710)
.|+.++|.+.++...+ ..|+ ......+...+.+. +.+++|.++|++..
T Consensus 148 ~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 148 AAERERELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5777788777777653 4666 33444455555555 66788888887763
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=4.2e-05 Score=77.24 Aligned_cols=137 Identities=9% Similarity=-0.036 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
..|..+...+.+.|++++|+..|++..+. .++.. .... .+... ...|. ...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 34666667777777777777777766541 11000 0000 11111 12344 567888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 005174 558 LYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 635 (710)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 3444 67788889999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 005174 636 KV 637 (710)
Q Consensus 636 ~~ 637 (710)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.97 E-value=5.1e-05 Score=62.61 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=61.0
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 005174 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQI 593 (710)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~ 593 (710)
..+...+.+.|++++|...|++..+. .|+ ...|..+..++.+.|++++|+..+++.- ..| +...|..+..++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33445566677777777777777653 554 6666677777777777777777776652 233 55667777777777
Q ss_pred cCChHHHHHHHHHHHhhCCCC
Q 005174 594 HRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.|+++.|...++.+++++|++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777777777764
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.96 E-value=8.6e-05 Score=59.80 Aligned_cols=98 Identities=11% Similarity=0.018 Sum_probs=64.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---CHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP---TSAMWATLLG 589 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~~~l~~ 589 (710)
.+..+...+...|++++|...+++..+. .|+ ...+..+..+|.+.|++++|.+.+++.- ..| +...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4445555566666777777766666653 333 5566667777777777777777776651 222 4667777777
Q ss_pred HHHhc-CChHHHHHHHHHHHhhCCCCC
Q 005174 590 ACQIH-RNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 590 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 615 (710)
.+... |+++.|.+.++.+.+..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777777777777777777653
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=7.8e-06 Score=67.16 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 005174 562 AGLLNKAKEIITKMP-Y---TP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~-~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 636 (710)
.|++++|+..|++.- . .| +...|..+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355555555555542 2 13 334555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 005174 637 VRTCMRD 643 (710)
Q Consensus 637 ~~~~m~~ 643 (710)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=0.00011 Score=61.26 Aligned_cols=107 Identities=10% Similarity=0.033 Sum_probs=55.4
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC----HHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-----YTPT----SAMWA 585 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~----~~~~~ 585 (710)
+..+...+...|++++|...+++.... .|+ ...+..+..+|...|++++|...+++.- ..++ ..+|.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 333444444455555555555554432 222 4444555555555555555555554441 0111 44555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
.+..++...|+++.|...++.++++.| ++.....+..++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 666666666777777777777776666 3455555444443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.92 E-value=0.00014 Score=60.56 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=58.1
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-C---HHHHHHHHHHH
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-L---EHFACMVDLYGRAGLLNKAKEIITKMP-YTP-T---SAMWATLLGAC 591 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~---~~~~~~l~~~~ 591 (710)
..+...|++++|...|+.+... .|+ . ..+..+..+|.+.|++++|...+++.- ..| + ...+..+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666543 233 2 355556666666666666666666541 122 2 44556666667
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
...|+++.|...++.+++..|+++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 777777777777777777777665444333
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00012 Score=60.83 Aligned_cols=59 Identities=10% Similarity=-0.075 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|...+++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444555555555555555555555442 222 3344444445555555555555555444
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=2.7e-05 Score=77.71 Aligned_cols=148 Identities=6% Similarity=-0.129 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
...|..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 446777778888889999999999887763 454432 223344444332221 126788888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH-hcCCchHH
Q 005174 558 LYGRAGLLNKAKEIITKM-PYT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA-ATGCWDKL 634 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 634 (710)
+|.+.|++++|+..+++. ... .+...|..+..++...|+++.|...++++++++|+++..+..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988876 223 367788888899999999999999999999999999988888888844 55667777
Q ss_pred HHHHHHHHhCC
Q 005174 635 AKVRTCMRDLG 645 (710)
Q Consensus 635 ~~~~~~m~~~~ 645 (710)
.+.++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 77777776543
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=0.00013 Score=76.13 Aligned_cols=95 Identities=11% Similarity=-0.048 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMP-YTP-T---------------SAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
..+..+...|.+.|++++|+..|++.- ..| + ...|..+..++.+.|+++.|...++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 345555555566666666665555541 111 1 57888889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+++..|..++.+|...|++++|.+.+++....
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988753
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.87 E-value=9.2e-05 Score=64.37 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCch
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP----YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE------NSGY 617 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~ 617 (710)
+..+...|...|++++|.+.+++.- ..++ ...+..+...+...|+++.|...+++++++.+. ....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 4444444444555554444444331 0011 234444555556666666666666665554211 1345
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 618 YVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+..++.+|...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77788888888888888888776543
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=2.5e-05 Score=81.40 Aligned_cols=125 Identities=10% Similarity=-0.013 Sum_probs=84.1
Q ss_pred hhccCcHHHHHHHHHHHHHHhC--C---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYG--I---FPQ-LEHFACMVDLYGRAGLLNKAKEIITKM---------PYTPT-SAMWAT 586 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ 586 (710)
+...|++++|+.++++..+... + .|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666665554321 1 223 455667777777777777777666654 23343 346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhh-----CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLET-----RPEN---SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
|...|...|++++|+..+++++++ .|+. ......+..++...|++++|+.++..+++...+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777788888888888888777764 5555 445568888899999999999999999876543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=7.4e-05 Score=75.40 Aligned_cols=64 Identities=9% Similarity=-0.076 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999999999999999999988765
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=0.00073 Score=72.18 Aligned_cols=169 Identities=7% Similarity=-0.121 Sum_probs=132.3
Q ss_pred CChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC
Q 005174 461 GKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGE----------GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527 (710)
Q Consensus 461 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 527 (710)
..-++|.+.++.+.. | +...|+.--..+...|+ +++++..++++.+...+ +..+|..-...+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 344566777776653 2 45567776666666666 89999999999885322 5667777777777888
Q ss_pred --cHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-------
Q 005174 528 --LVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAG-LLNKAKEIITKMP-YTP-TSAMWATLLGACQIH------- 594 (710)
Q Consensus 528 --~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~------- 594 (710)
+++++...++++.+. .|. ...|+.-..++.+.| .++++++.++++- ..| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999875 565 777888888888888 8999999999883 334 788998888776653
Q ss_pred -------CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 005174 595 -------RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 595 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 633 (710)
+.++++.+.++.+++++|++...|..+..++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 556889999999999999999999999999999998554
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=5.3e-05 Score=66.33 Aligned_cols=78 Identities=15% Similarity=0.056 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC-chHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS-GYYVLIANMY 625 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 625 (710)
...|..+..+|.+.|++++|+..+++.- . +.+...|..+..++...|+++.|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4577888888888999999888888762 2 33677888888899999999999999999999999887 4455554444
Q ss_pred H
Q 005174 626 A 626 (710)
Q Consensus 626 ~ 626 (710)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=2.5e-05 Score=64.07 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=50.2
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
.|++++|...|++..+...-.|+ ...+..+..+|.+.|++++|++.+++.- ..| +...+..+..++...|+++.|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555555431000233 4455566666666666666666665551 122 45556666666666677777777
Q ss_pred HHHHHHhhCCCCCchH
Q 005174 603 AAEKLLETRPENSGYY 618 (710)
Q Consensus 603 ~~~~~~~~~p~~~~~~ 618 (710)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777766665443
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.0003 Score=72.95 Aligned_cols=53 Identities=8% Similarity=-0.002 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCh--------------------hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 352 ITMYSRCKDLRHAYILFKMTAEKSI--------------------ITWNSMLSGYTHLDCAEESAFLFREMFR 404 (710)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 404 (710)
...+.+.|++++|.+.|..+.+.+. .++..+...|...|++++|.+.+..+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456777888888888876543100 1356677778888888888877777654
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=0.00013 Score=63.35 Aligned_cols=132 Identities=15% Similarity=0.017 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hh
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-PD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LE 550 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 550 (710)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555554432100 11 124555555666666666666666665543211111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP-------YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 611 (710)
.+..+...+...|++++|.+.+++.- ..+ ....+..+...+...|+++.|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55666667777777777776666541 111 12345566677777788888887777776653
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=8.5e-05 Score=63.32 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKM--------PYTPT-SAMW----ATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
.|..+..++.+.|++++|+..+++. +..|+ ...| .....++...|++++|...++++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666677777777777776666554 22664 5578 888899999999999999999999999988766
Q ss_pred HH
Q 005174 618 YV 619 (710)
Q Consensus 618 ~~ 619 (710)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 44
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.75 E-value=0.0001 Score=73.42 Aligned_cols=151 Identities=9% Similarity=0.001 Sum_probs=83.3
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhcc
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 526 (710)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45678888999999999999999998663322111 1223344444433221 23677788888999
Q ss_pred CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCChHHHHH
Q 005174 527 GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGA-CQIHRNTGIGEW 602 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~-~~~~g~~~~a~~ 602 (710)
|++++|...+++.... .|+ ...|..+..+|...|++++|+..|++.- ..| +...+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998864 565 7888999999999999999999999873 445 34455555544 234566777888
Q ss_pred HHHHHHhhCCCCC
Q 005174 603 AAEKLLETRPENS 615 (710)
Q Consensus 603 ~~~~~~~~~p~~~ 615 (710)
.++.+++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 8888888888764
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=6.1e-05 Score=60.79 Aligned_cols=90 Identities=11% Similarity=-0.059 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHH
Q 005174 548 QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYYV 619 (710)
Q Consensus 548 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 619 (710)
+...+..+...+.+.|++++|++.+++.- .+.+...|..+..++...|+++.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567778888888888888888888762 23367788888888999999999999999999999988 77788
Q ss_pred HHHHHHHhcCCchHHHHH
Q 005174 620 LIANMYAATGCWDKLAKV 637 (710)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~ 637 (710)
.++.++...|++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 888888888888777554
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.72 E-value=0.00015 Score=57.32 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+...|..+...+...|+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778888999999999999999999999999999999999999999999999999999887764
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.66 E-value=0.00024 Score=54.62 Aligned_cols=81 Identities=20% Similarity=0.148 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+.+.|++++|+..+++.- .+.+...|..+..++...|+++.|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567777788888888888888887762 23366778888888899999999999999999999999999999988887
Q ss_pred hcC
Q 005174 627 ATG 629 (710)
Q Consensus 627 ~~g 629 (710)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 655
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.57 E-value=0.00013 Score=76.02 Aligned_cols=115 Identities=7% Similarity=-0.033 Sum_probs=88.3
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCCC---CchH
Q 005174 557 DLYGRAGLLNKAKEIITKM---------PYTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET-----RPEN---SGYY 618 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~ 618 (710)
..+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+..+++++++ .|+. ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999988765 13343 457889999999999999999999998875 4444 5678
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHH
Q 005174 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689 (710)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 689 (710)
..|+.+|..+|++++|+.++++..+.-. +..| ..||...++..+|...+.+++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-VTHG-----------------PSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHhC-----------------CCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654211 1111 479999999988876665443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.54 E-value=0.00021 Score=58.18 Aligned_cols=76 Identities=12% Similarity=-0.004 Sum_probs=58.2
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 568 AKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
|++.+++. ...| +...|..+...+...|+++.|...++++++++|+++..|..++.+|...|++++|.+.++....
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444443 2233 5677777888888888888888888888888888888888888888888888888888877654
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.52 E-value=0.00093 Score=51.56 Aligned_cols=69 Identities=17% Similarity=0.034 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 578 TPTSAMWATLLGACQIHRN---TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 578 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
++|...|..+..++...++ .+.|...++++++++|+++.....++..+.+.|++++|.+.|+.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4577788888888765554 78999999999999999999999999999999999999999999987554
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=9e-05 Score=63.01 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-----------CchHHHHHHHHHHhCC
Q 005174 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATG-----------CWDKLAKVRTCMRDLG 645 (710)
Q Consensus 597 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~ 645 (710)
+++|+..++++++++|++...|.+++++|...| ++++|++.+++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 567999999999999999999999999998875 8999999988877643
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00098 Score=53.40 Aligned_cols=66 Identities=9% Similarity=-0.060 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
++...|..+...+...|+++.|...++++++++|+++..|..++.+|.+.|++++|.+.+++....
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678888899999999999999999999999999999999999999999999999999988753
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.43 E-value=0.0005 Score=70.46 Aligned_cols=115 Identities=8% Similarity=0.012 Sum_probs=79.1
Q ss_pred HHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCC---CCchH
Q 005174 557 DLYGRAGLLNKAKEIITKMP---------YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET-----RPE---NSGYY 618 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~---~~~~~ 618 (710)
.-+.+.|++++|+.++++.- ..|+ ..+++.|..+|...|++++|+..+++++++ .|+ -...|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445666666666665440 1121 345666777777777777777777777654 333 35678
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHH
Q 005174 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689 (710)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 689 (710)
..|+.+|...|++++|+.++++..+.-. +..| ..||...+++.+|.+.+.+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTHG-----------------REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH-HhcC-----------------CCChHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999887654211 1122 479999999999999888886
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.37 E-value=0.0012 Score=50.55 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+...|..+...+...|+++.|...+++++++.|+++..+..++.+|...|++++|.+.+++...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567888888899999999999999999999999999999999999999999999999988765
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.27 E-value=0.0064 Score=64.90 Aligned_cols=148 Identities=10% Similarity=-0.015 Sum_probs=119.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCc----------HHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 491 QGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGL----------VVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
....++|++.++++.. +.|+.. .|+.--.++.+.|+ ++++...++.+.+. .|. ...|+.-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3445788999999998 466644 45544444555555 89999999999875 676 7788888888
Q ss_pred HHhcC--CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-----
Q 005174 559 YGRAG--LLNKAKEIITKMP--YTPTSAMWATLLGACQIHR-NTGIGEWAAEKLLETRPENSGYYVLIANMYAAT----- 628 (710)
Q Consensus 559 ~~~~g--~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 628 (710)
+.+.| ++++|++.++++- .+.|..+|+.-..+....| ..+.+.+.++++++.+|.+..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 89999 7799999999983 3458899999888888888 889999999999999999999999999999885
Q ss_pred ---------CCchHHHHHHHHHHh
Q 005174 629 ---------GCWDKLAKVRTCMRD 643 (710)
Q Consensus 629 ---------g~~~~A~~~~~~m~~ 643 (710)
+++++|.+.++....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 557888887776654
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.23 E-value=0.00054 Score=58.23 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 005174 528 LVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL----------LNKAKEIITKM-PYTP-TSAMWATLLGACQIH 594 (710)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~ 594 (710)
.+++|.+.++...+. .|+ ...|..+..++...|+ +++|+..|++. .+.| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344444444444432 343 4444444444444433 23555555544 1223 344555555555544
Q ss_pred -----------CChHHHHHHHHHHHhhCCCCC
Q 005174 595 -----------RNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 595 -----------g~~~~a~~~~~~~~~~~p~~~ 615 (710)
|++++|...++++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999874
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.21 E-value=0.00018 Score=71.56 Aligned_cols=443 Identities=10% Similarity=0.059 Sum_probs=222.3
Q ss_pred CCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHc
Q 005174 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186 (710)
Q Consensus 107 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 186 (710)
..+.+|+.|..++.+.+++.+|++.| +...|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 35678999999999999999887766 3456888899999999999999999888776665533 4445567888888
Q ss_pred ccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 005174 187 EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266 (710)
Q Consensus 187 ~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 266 (710)
+.++..+-+.+.. .|+..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.+.-++.
T Consensus 128 k~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 128 KTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp TSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred hhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8887664433322 24444445666777788888888888777632 222222233333333332221111
Q ss_pred HHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcC-CCch
Q 005174 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY-GEYE 345 (710)
Q Consensus 267 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~-~~~~ 345 (710)
-+..||-.+-.+|...+.+.-|.-.=-.+.-. || .+..++..|-..|.+++-..+++.-+ |+ ....
T Consensus 197 ------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHm 263 (624)
T 3lvg_A 197 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHM 263 (624)
T ss_dssp ------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCH
T ss_pred ------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhH
Confidence 13334444444444444333332221111110 00 01112223333344433333333222 11 1233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHh----cCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------
Q 005174 346 NVRNALITMYSRCKDLRHAYILFKM----TAEK-------SIITWNSMLSGYTHLDCAEESAFLFREMFRSG-------- 406 (710)
Q Consensus 346 ~~~~~li~~~~~~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-------- 406 (710)
.+++-|.-.|+|-. .++..+-++. +.-| ....|.-++-.|++-.+++.|... |.++.
T Consensus 264 GmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 264 GMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQ 339 (624)
T ss_dssp HHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGG
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHH
Confidence 44555655666542 2333332221 2111 335677788788877777766533 22210
Q ss_pred ------CCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhh--------
Q 005174 407 ------VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL-------- 472 (710)
Q Consensus 407 ------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------- 472 (710)
-..|...|-..|+-| +...+...+-|+..+...=+...+.++|.+
T Consensus 340 Fkdii~KVaN~EiyYKAi~FY---------------------L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIk 398 (624)
T 3lvg_A 340 FKDIITKVANVELYYRAIQFY---------------------LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVK 398 (624)
T ss_dssp GTTTGGGCSCSHHHHHHHHHH---------------------TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGT
T ss_pred HHHHHHHcchHHHHHHHHHHH---------------------HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhH
Confidence 012222333333333 222233344444444444444444444443
Q ss_pred -----cCCCChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 005174 473 -----MSRRDEVTYTS-LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546 (710)
Q Consensus 473 -----~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 546 (710)
....|....|- +-..|....++ .+...-+.+|.+-..+..|.++ ++ .
T Consensus 399 pYL~~Vq~~N~~aVNeAln~L~IEEEDy-------------------~~LR~SId~ydNFD~i~LA~rL-----Ek---H 451 (624)
T 3lvg_A 399 PYLRSVQNHNNKSVNESLNNLFITEEDY-------------------QALRTSIDAYDNFDNISLAQRL-----EK---H 451 (624)
T ss_dssp GGGTSCCCSCCHHHHHHHHHHHHHTTCC-------------------HHHHHTTSSCCCSCTTHHHHHH-----HT---C
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhH-------------------HHHHHHHHHhccccHHHHHHHH-----hh---C
Confidence 33334333332 23333333333 3333333344444444444332 11 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 547 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
+-.+....-...|.+.+++++++++.++=.. |.-.+...+..|+.+.++..++.+.+.+- .+.+......+.
T Consensus 452 eL~eFRrIAA~LYkkn~rw~qsi~l~KkDkl------ykDAietAa~S~~~elaeeLL~yFv~~g~--~EcF~a~LytCY 523 (624)
T 3lvg_A 452 ELIEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQEEK--RECFGACLFTCY 523 (624)
T ss_dssp SSHHHHHHHHHHHHTTCHHHHHSSCSSTTCC------TTGGGTTTTTCCCTTHHHHHHHHHHHHCS--THHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHhccc------HHHHHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHHh
Confidence 2344444556678888888888777655332 22233445567777777777777776542 233333333333
Q ss_pred hcCCchHHHHH
Q 005174 627 ATGCWDKLAKV 637 (710)
Q Consensus 627 ~~g~~~~A~~~ 637 (710)
..=+.|-++++
T Consensus 524 dLlrpDvVlEl 534 (624)
T 3lvg_A 524 DLLRPDVVLET 534 (624)
T ss_dssp SSSSCHHHHHH
T ss_pred hccChHHHHHH
Confidence 33445555443
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.16 E-value=0.0038 Score=52.52 Aligned_cols=110 Identities=10% Similarity=-0.076 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHH
Q 005174 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AGLLNK 567 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 567 (710)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46777888888777766 33333 555566666777777777777653 345566666666666 666777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhh
Q 005174 568 AKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEWAAEKLLET 610 (710)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 610 (710)
|.+.|++.....+...+..|...|.. .+|.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 77776665333455555555555555 55666666666655554
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.13 E-value=0.0032 Score=53.03 Aligned_cols=112 Identities=7% Similarity=-0.120 Sum_probs=73.2
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 005174 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEW 602 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~ 602 (710)
+++++|..+|++..+. | .|.. . |..+|...+.+++|.+.|++.....+...+..|...|.. .+|.++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4566777777776654 3 2332 2 666666666777777777766434566666666666665 667777777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 005174 603 AAEKLLETRPENSGYYVLIANMYAA----TGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 646 (710)
.++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777665 456667777777777 6777777777776666543
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.11 E-value=0.0019 Score=52.21 Aligned_cols=65 Identities=14% Similarity=-0.005 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
...+..+...|.+.|++++|+..+++.- .+.+...|..+..++...|+++.|...+++++++.|+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4455555555555566666655555541 1223455555666666666666666666666666553
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.09 E-value=0.00046 Score=70.58 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCC---CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCee
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLET-----RPE---NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 653 (710)
.+++.|..+|...|++++|+..+++++++ .|+ -...|..|+.+|..+|++++|+.++++..+.-. +..|
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~~lG-- 417 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-VAHG-- 417 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC--
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHcC--
Confidence 34555556666666666666666655543 333 355688888888888888888888876653211 1111
Q ss_pred EEEECCeEEEEeeCCCCCcchhhHHHHHH
Q 005174 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682 (710)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 682 (710)
..||...+++.+|+
T Consensus 418 ---------------~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 418 ---------------KDHPYISEIKQEIE 431 (433)
T ss_dssp ---------------TTCHHHHHHHHHHH
T ss_pred ---------------CCChHHHHHHHHHh
Confidence 36888777766654
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.92 E-value=0.0031 Score=49.24 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 555 MVDLYGRAGLLNKAKEIITKMP-YTP-TSA-MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
....+.+.|++++|++.+++.- ..| +.. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455666677777766666552 223 445 566666666666777777777777777776666554
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.87 E-value=0.019 Score=56.18 Aligned_cols=136 Identities=9% Similarity=-0.018 Sum_probs=62.9
Q ss_pred ChhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHhhc----cC----cHHHHHHHHHHHHHH
Q 005174 477 DEVTYTSLIAGYGI--QG---EGRVALKLFEEMNKNQIKPDH-VTMVAVLSACSH----SG----LVVEGQKQFERMTSI 542 (710)
Q Consensus 477 ~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~----~g----~~~~a~~~~~~~~~~ 542 (710)
+...|...+.+... .+ ...+|+.+|++..+ ..|+. ..|..+..++.. .+ ......+.++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 56666666655432 22 34678888888887 45653 344433333320 00 000111111111000
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 543 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.....+..+|..+...+...|++++|...++++. ..|+...|..+...+...|+.+.|...+++++.++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0112224455555444444555555555555542 23454444444445555555555555555555555543
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.84 E-value=0.0019 Score=64.43 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=112.2
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhh
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 113 (710)
..++..|..++.+..+.|.+++-+..+...++..-.|... +.|+.+|++.+++.+..++.. .|+..-..
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID----teLi~ayAk~~rL~elEefl~-------~~N~A~iq 148 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE----TELIFALAKTNRLAELEEFIN-------GPNNAHIQ 148 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT----HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH----HHHHHHHHhhCcHHHHHHHHc-------CCCcccHH
Confidence 3445556666666666666666666665555543333333 455566665555433222211 23443344
Q ss_pred HHHHHHHccCChhHHHHhHhhCC------------------------CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 005174 114 KLVTFYASFSLYNNACFLVENSN------------------------IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169 (710)
Q Consensus 114 ~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~ 169 (710)
.+.+-|...|.++.|.-+|..++ ..++.+|..+-.+|+..+.+..|--.--.+.-
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv- 227 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV- 227 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-
Confidence 44455555555555555554432 12445677776777777666665433333221
Q ss_pred CCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-------
Q 005174 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE----R------- 238 (710)
Q Consensus 170 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~------- 238 (710)
.+.-+..++.-|-..|.+++-..+++....--+....+++-|.-.|++- +.++-.+.++..-. |
T Consensus 228 ----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 228 ----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp ----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred ----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2222333444556666666655555555422344667778887788775 34444444443311 2
Q ss_pred ChhHHHHHHHHHHhCCChHHHH
Q 005174 239 DAVSWNTMISAYASKGLWKEAF 260 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~ 260 (710)
....|.-++-.|++-.+++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 4456888888888877777664
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.71 E-value=0.016 Score=56.72 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=94.8
Q ss_pred CCCChHHHHHHHHHhh--cc---CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh---cC-C-------HHHHHHH
Q 005174 509 IKPDHVTMVAVLSACS--HS---GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGR---AG-L-------LNKAKEI 571 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g-~-------~~~A~~~ 571 (710)
.+.+...|...+.+.. .. ....+|..+|++..+. .|+ ...|..+..+|.- .+ . ...|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3556677777776653 22 3457899999999874 898 5566554444421 11 1 1123332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 572 ITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 572 ~~~m~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
...+. .+.+..+|..+...+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.+.+...++.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23333 3457888888887777889999999999999999974 67788999999999999999999987765443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.0076 Score=61.58 Aligned_cols=84 Identities=17% Similarity=0.010 Sum_probs=44.9
Q ss_pred CcHHHHHHHHHHHHHHh--CCC---CC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHH
Q 005174 527 GLVVEGQKQFERMTSIY--GIF---PQ-LEHFACMVDLYGRAGLLNKAKEIITKM---------PYTPT-SAMWATLLGA 590 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~l~~~ 590 (710)
|++++|..++++..... -+. |+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 45555555555544321 111 22 344555666666666666665555544 12333 2356666666
Q ss_pred HHhcCChHHHHHHHHHHHhh
Q 005174 591 CQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~ 610 (710)
|...|++++|+..+++++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 66666666666666666553
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.65 E-value=0.011 Score=49.57 Aligned_cols=88 Identities=13% Similarity=-0.007 Sum_probs=62.0
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChHH
Q 005174 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG---LLNKAKEIITKMP-YT-P--TSAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~-p--~~~~~~~l~~~~~~~g~~~~ 599 (710)
..+..+++.|.+.... + .++..+...+..++++.+ +.++++.++++.- .. | +...+..|.-+|.+.|+++.
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3456666777766553 2 367777778888888877 5668888877662 22 4 34566667777888888888
Q ss_pred HHHHHHHHHhhCCCCCc
Q 005174 600 GEWAAEKLLETRPENSG 616 (710)
Q Consensus 600 a~~~~~~~~~~~p~~~~ 616 (710)
|.+.++.+++++|++..
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 88888888888887633
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.64 E-value=0.011 Score=45.93 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=39.0
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhCCCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQ-LE-HFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
...+...|++++|...++++.+. .|+ .. .+..+..+|.+.|++++|++.|++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888888877764 555 55 7777778888888888888877766
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.60 E-value=0.0083 Score=46.97 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
...|..+...|...|++++|+..|++..+.. +-+...|..+..++...|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555555555421 1123344445555555555555555555544
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.24 E-value=0.029 Score=57.35 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-hhH
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKN---QIKPD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIY-----GIFPQ-LEH 551 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 551 (710)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++...+ .-.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455677888888888777653 12233 2366777777777888888887777765432 12333 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
++.|...|...|++++|+.++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 667777777777777777776654
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.97 E-value=0.23 Score=55.78 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=55.8
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
...+|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 345567777766665542 345677777777777777777777776532 223333344455555555544
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhh
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (710)
+.....|. ++.-..+|.+.|++++|.+++.+
T Consensus 731 ~~a~~~~~-------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 731 KDAETTGK-------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCc-------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444431 23334445566666666655443
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.97 E-value=0.25 Score=55.52 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=53.6
Q ss_pred hhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHH
Q 005174 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 457 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
...+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 345566666666655543 455677777777777777777777766542 122222233344544444443
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
+..... | .++.-..+|.+.|++++|++++.++.
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 333221 1 12333444555666666666665553
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.95 E-value=0.029 Score=47.00 Aligned_cols=85 Identities=14% Similarity=0.004 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC---cHHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG---LVVEGQKQFERMTSIYGIFP--QLEHFACMVDLYGRAGLLNK 567 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 567 (710)
....+.+-|.+..+.|. ++..+.-.+..++.+.. ++++|..+++...+. . .| ..+.+..|.-+|.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 45667777777777664 56666666777788877 677999999998876 2 36 26677778888999999999
Q ss_pred HHHHHHhC-CCCCC
Q 005174 568 AKEIITKM-PYTPT 580 (710)
Q Consensus 568 A~~~~~~m-~~~p~ 580 (710)
|.+.++.. ...|+
T Consensus 90 A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCC
Confidence 99999887 34453
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.75 E-value=0.032 Score=52.24 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhhCCCC-CchHHHHHHHHHhc-CCchHHHHHHHHHHhCCCcCCCC
Q 005174 581 SAMWATLLGACQI-----HRNTGIGEWAAEKLLETRPEN-SGYYVLIANMYAAT-GCWDKLAKVRTCMRDLGVRKIPG 651 (710)
Q Consensus 581 ~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~ 651 (710)
...|..|...|.. .|+.++|++.++++++++|+. ..+++..++.|++. |+.++|.+.+++....+.+..|+
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 4566666666666 589999999999999999975 99999999999885 88999999988888766654444
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.10 E-value=0.14 Score=40.07 Aligned_cols=69 Identities=12% Similarity=-0.042 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKMP---------YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
..|...+.+.|+++.|...++..- ..+...++..|..++.+.|+++.|...++.+++++|+++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 344444555555555554444330 123456777888888888888888888888888888876654443
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.81 E-value=1.7 Score=37.37 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=81.5
Q ss_pred hhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ |..+.--|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344778888888887776 4677899999999999999999998887752 22333335556666665555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606 (710)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 606 (710)
-+..... | -++.-...+.-.|+++++.+++.+...-|... -....+|-.+.|.+..+.
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHH
Confidence 4443332 1 25555566777889999999888875322111 112345665555555443
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.79 E-value=0.22 Score=37.93 Aligned_cols=65 Identities=9% Similarity=-0.018 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 549 LEHFACMVDLYGRAGL---LNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
...+..+..++...++ .++|..++++. ...| +...+..+...+...|+++.|...++.+++.+|+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4445555555543332 45555555554 1222 3444444555555666666666666666666655
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.79 E-value=0.11 Score=41.77 Aligned_cols=91 Identities=11% Similarity=-0.026 Sum_probs=60.5
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCh
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK---AKEIITKMP-YT-P--TSAMWATLLGACQIHRNT 597 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~-~~-p--~~~~~~~l~~~~~~~g~~ 597 (710)
....+..+++.|...... |. |+..+-..+..++.+..+..+ ++.++++.- .. | .......|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455666666665543 32 677777778888888776665 777777763 22 3 233444566678888888
Q ss_pred HHHHHHHHHHHhhCCCCCch
Q 005174 598 GIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~ 617 (710)
+.|.+.++.+++++|++..+
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 88888888888888876443
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.77 E-value=1.3 Score=35.69 Aligned_cols=140 Identities=13% Similarity=0.033 Sum_probs=83.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
.-.|..++..++..+.... .+..-++-+|--....-+=+-..+.++.+-+-|.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3456667777777766542 23334444443333333334444444444332211 235555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
..-+-.+. .+....+.-++.....|.-+.-.+.+..++.-+|.+|+....++++|.+.|...+|.+++++.-+.|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555553 234444555667777788777777777665556667888888889999999988888888888887774
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.66 E-value=1.9 Score=37.05 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=58.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 433 (710)
....+|+++.|.++.+.+ .+...|..+.......|+++-|...|.+... +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777776655 3456777777777777777777777776532 23333344445555555555
Q ss_pred HHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC
Q 005174 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474 (710)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 474 (710)
-+.....|. ++.-...+.-.|+++++.++|.+..
T Consensus 83 a~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 444444441 3333344445556666555554433
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.64 E-value=0.4 Score=38.56 Aligned_cols=91 Identities=11% Similarity=-0.073 Sum_probs=60.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHH---HHHHHHHHHHHhCCCC--ChhHHHHHHHHHH
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE---GQKQFERMTSIYGIFP--QLEHFACMVDLYG 560 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~ 560 (710)
...........+.+-|.+....|. |+..+--.+..++.+...... +..+++.+... -.| ..+....|.-++.
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 333444455666667776666554 666665566667777776555 88888877653 225 2556667888899
Q ss_pred hcCCHHHHHHHHHhC-CCCC
Q 005174 561 RAGLLNKAKEIITKM-PYTP 579 (710)
Q Consensus 561 ~~g~~~~A~~~~~~m-~~~p 579 (710)
+.|++++|.+.++.+ ...|
T Consensus 86 klg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhhhHHHHHHHHHHHHHhCC
Confidence 999999999998887 3345
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.64 E-value=0.27 Score=38.39 Aligned_cols=64 Identities=13% Similarity=-0.027 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETR-------PENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+..-+..|...+...|+++.|...++.+++.. +..+..|..|+.+|.+.|++++|...+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455678888999999999999999998763 23466799999999999999999999888764
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.20 E-value=1.5 Score=35.96 Aligned_cols=69 Identities=12% Similarity=0.018 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 546 FPQLEHFACMVDLYGRAGLLN---KAKEIITKMP-YTP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.|+..+-..+..++.+..+.+ +++.++++.- ..| .....--|.-++.+.|+++.|.+..+.+++++|+|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 466667667777777776544 4555665541 123 23344455566777888888888888888888865
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.84 E-value=8.1 Score=41.13 Aligned_cols=253 Identities=7% Similarity=-0.011 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 005174 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425 (710)
Q Consensus 346 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 425 (710)
..-+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+-..| .........++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3345556666777778777776655 33344444555666677777777766666665554 222233444555555444
Q ss_pred chHH--HHHHHHHHHHhCC----------CCCch-HHHhHHhhhhhhcCChhHHHHHHhhcCCCChh---HHHHHHHHHH
Q 005174 426 NLQH--GKEFHCYILRRAM----------FNEHL-LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV---TYTSLIAGYG 489 (710)
Q Consensus 426 ~~~~--a~~~~~~~~~~~~----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~ 489 (710)
.+.. ..+-...+...+. ++++. .....++..+. +...+....... .++.. .+..-+.-+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 3221 1111222222220 11111 11122222221 222222222221 11111 1111223333
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHH----HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 005174 490 IQGEGRVALKLFEEMNKNQIKPDHVTM----VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565 (710)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 565 (710)
+ .+.+.|..+|....+.+ ..+.... ..+.......+...++...+...... .++.....-.+....+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 37899999998886533 2233322 22333334445355666666665432 34433333444455578999
Q ss_pred HHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 566 NKAKEIITKMPYTP-T-SAMWATLLGACQIHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 566 ~~A~~~~~~m~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 609 (710)
+.|...|+.|+..+ + ....--+..+....|+.+.|...++.+.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999997433 2 22233455677788999999998888875
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.58 E-value=0.69 Score=43.35 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=71.9
Q ss_pred cCChhHHHHHHhhcCCCCh--hHHHHHHH-HHHhc--CC------hHHHHHHHHHHHHCCCCCC---hHHHHHHHHHhhc
Q 005174 460 SGKVPEAKSVFDLMSRRDE--VTYTSLIA-GYGIQ--GE------GRVALKLFEEMNKNQIKPD---HVTMVAVLSACSH 525 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~~~~--~~~~~li~-~~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 525 (710)
.|+..+-...+.++...++ ..|..++. ++... |. ...|...+++..+ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444555555554333 34555544 33332 22 4567777777776 4566 4467777777777
Q ss_pred -----cCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 005174 526 -----SGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRA-GLLNKAKEIITKM 575 (710)
Q Consensus 526 -----~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~-g~~~~A~~~~~~m 575 (710)
.|+.++|.+.|++..+ +.|+ ..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4888888888888876 4673 67777888888874 8888888888776
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.51 E-value=0.75 Score=37.97 Aligned_cols=55 Identities=7% Similarity=-0.061 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 563 GLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 563 g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
++.++|.++|+.+. .+.-...|-.....-.++|++..|.+.+..++.+.|...+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 56667777776651 12226677666666778899999999999888888875443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.27 E-value=0.59 Score=50.75 Aligned_cols=54 Identities=7% Similarity=-0.074 Sum_probs=50.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..|...|+++.|...++++...-|.+-.+|..|+.+|...|+|+.|+=.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 447788999999999999999999999999999999999999999999888774
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.52 E-value=4.7 Score=32.57 Aligned_cols=139 Identities=11% Similarity=-0.033 Sum_probs=86.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHH
Q 005174 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466 (710)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 466 (710)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..+.++.+-+. | -..+||++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki--F------------Dis~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY--F------------DLDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG--S------------CGGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh--c------------CcHhhhcHHHH
Confidence 3456677777777776654 24445555554443333333333332222111 0 12357777777
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 005174 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545 (710)
Q Consensus 467 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 545 (710)
...+-.+.. +....+..++.+...|+-++-.+++.++.. +.+|++.....+..||.+.|+..++.+++.++-++ |+
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 766665543 334556667788888888888888888544 35677788888888888888888888888888775 54
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.25 E-value=10 Score=36.06 Aligned_cols=164 Identities=11% Similarity=0.075 Sum_probs=104.7
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHH----HHHHHhCCCCCCcccHHHHHHHHcc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV----YKQMQSRRIRGDNFTYPSVLKACGE 187 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (710)
+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44566668888999999988753 35566777887766654 5556677899998888888888765
Q ss_pred cC--CchHHHHHHHHHH-----hc--CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC---CC
Q 005174 188 MM--DVDFGRVVHSCID-----AC--HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK---GL 255 (710)
Q Consensus 188 ~~--~~~~a~~~~~~~~-----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 255 (710)
.. .... ..+...++ .| ..-++..+..+...|.+.|++.+|...|-.-...|...+..++.-+... |.
T Consensus 105 ~p~~~~~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNL-KDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTH-HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 43 2222 22222222 22 2347788899999999999999999887633222566666666555544 54
Q ss_pred hHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302 (710)
Q Consensus 256 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (710)
..++--++.+. +-.|.-.|+...|..+|+...
T Consensus 184 ~~e~dlf~~Ra---------------VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFSRL---------------VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHH
Confidence 44432222221 223445677777777777654
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.91 E-value=23 Score=39.41 Aligned_cols=269 Identities=12% Similarity=0.044 Sum_probs=135.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC--CCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCC--C-----CChhHHHH--H
Q 005174 248 SAYASKGLWKEAFQLFVEMQEEG--VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET--Y-----LDSVATVI--G 316 (710)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~-----p~~~t~~~--~ 316 (710)
-+....|+.++++.++......+ -.+....-..+.-+....|..+++.+++.......- . +....-.+ +
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 35667788888887776654321 111122223344456667776678887777654321 0 10111111 1
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChH
Q 005174 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK---SIITWNSMLSGYTHLDCAE 393 (710)
Q Consensus 317 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 393 (710)
--++...++-+....+...+....-..-....-+|...|.-.|+-+....++..+.+. ++.-.-.+.-++...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 1122223333333333333322110000011223444455667777766666654321 2222333444556778888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHH---HHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHH
Q 005174 394 ESAFLFREMFRSGVEPNYVTIA---SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470 (710)
Q Consensus 394 ~a~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 470 (710)
.+..+++.+.... .|. .-|. .+.-+|+..|+.....+++..+.... ..++.-.-.+.-+....|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888877642 222 2333 23346778888888888888887653 233332222223344467777777887
Q ss_pred hhcCC-CChhHHHH--HHHHHHhcCCh-HHHHHHHHHHHHCCCCCChHHHHHHHHHh
Q 005174 471 DLMSR-RDEVTYTS--LIAGYGIQGEG-RVALKLFEEMNKNQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 471 ~~~~~-~~~~~~~~--li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 523 (710)
+.+.+ .|...-.. +.-|....|.. .+|+.++..+.. .+|..+-...+.++
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 75543 34433222 33334444443 678888888874 44544433333333
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.09 E-value=1.5 Score=35.46 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 546 FPQLEHFACMVDLYGRAGLLN---KAKEIITKM-PYTP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
.|+..+-..+..++.+..+.+ +++.++++. ...| ....+--|.-++.+.|+++.|.+..+.+++++|+|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 455666666667777666543 455555554 1223 244555566677777777777777777777777653
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.00 E-value=14 Score=35.47 Aligned_cols=166 Identities=9% Similarity=0.008 Sum_probs=104.6
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHH----HHHHhCCCCCCcccHHHHHHHHcc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY----KQMQSRRIRGDNFTYPSVLKACGE 187 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 187 (710)
+.++..-|.+.+++++|++++.. -...+.+.|+...|-++- +...+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44556668889999999998753 355667778877666554 556678899999988888888876
Q ss_pred cCCch-HHHHHHHHH----H-hc--CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHH
Q 005174 188 MMDVD-FGRVVHSCI----D-AC--HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259 (710)
Q Consensus 188 ~~~~~-~a~~~~~~~----~-~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 259 (710)
....+ .-..+...+ . .| ..-|+.....+...|.+.+++.+|...|=.-..+++..|..++.-+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 55322 112222222 2 23 3447788888999999999999999988432222335666655555554443332
Q ss_pred HHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303 (710)
Q Consensus 260 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (710)
--++.+ .+--|.-.++...|..+++...+
T Consensus 187 dlfiaR---------------aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PLYCAR---------------AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH---------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 222211 12234556677777776665543
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.90 E-value=1.1 Score=37.02 Aligned_cols=53 Identities=8% Similarity=-0.103 Sum_probs=43.9
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.+|.+.|++.++.++++...-+..|...+.--.+.|+++.|.+++.....++.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 37888899999999888555567777778878899999999999988877655
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.17 E-value=3.8 Score=34.57 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMPY 577 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 577 (710)
.+.-.-+..+|.+.|++++|+.+++.+|.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 44555578888888999999999888873
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.04 E-value=6 Score=29.79 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005174 190 DVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268 (710)
Q Consensus 190 ~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (710)
..++|..|-+.+. .+. ...+--.-+..+.+.|++++|..+.+..+-||.+.|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4567777777766 443 33333344455677888888888888888888888877654 356777777777766655
Q ss_pred cC
Q 005174 269 EG 270 (710)
Q Consensus 269 ~g 270 (710)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.46 E-value=6.6 Score=32.13 Aligned_cols=43 Identities=5% Similarity=-0.021 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 600 GEWAAEKLLETRPE-NSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 600 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+...++.+..-.|. .......|+-.+.+.|++++|.+..+.+.
T Consensus 61 GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 61 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444443442 23333444445555555555555444443
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.39 E-value=5.8 Score=29.83 Aligned_cols=77 Identities=8% Similarity=-0.032 Sum_probs=53.3
Q ss_pred CchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005174 190 DVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268 (710)
Q Consensus 190 ~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (710)
..++|..|-+.+. .+. ...+--.-+..+.+.|++++|..+.+..+-||.+.|-+|-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4567777777766 443 33333444555677888888888888888888888877654 467777777777777765
Q ss_pred cC
Q 005174 269 EG 270 (710)
Q Consensus 269 ~g 270 (710)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.29 E-value=1.7 Score=35.13 Aligned_cols=70 Identities=10% Similarity=-0.078 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHHHhhccC---cHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 005174 509 IKPDHVTMVAVLSACSHSG---LVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTS 581 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 581 (710)
-.|+..|--.+..++.++. +..+|..+++.+.+. .|. .+.+--|.-++.+.|++++|.+..+.+ ...|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3455554444444555544 455677888777764 353 566677788888888888888888876 455543
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.00 E-value=24 Score=33.56 Aligned_cols=169 Identities=14% Similarity=0.088 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCcHHHHHHHHHHHhc
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL----FREMFRSGVEPNYVTIASILPLCAR 423 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 423 (710)
+.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ ++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 356777788999999999876432 3345667776665554 5555567889998888888877665
Q ss_pred cCch-----HHHHHHHHHHHHhCC-CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhc---CCh
Q 005174 424 VANL-----QHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ---GEG 494 (710)
Q Consensus 424 ~~~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 494 (710)
...- .-.........+.|. ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 3321 222233333334432 2246778888999999999999999887633222455555554444333 332
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 005174 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 495 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 542 (710)
.++ |...-.+++. |...|++..|..+++...+.
T Consensus 185 ~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 221 2222223333 44567888998888877654
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.37 E-value=27 Score=33.52 Aligned_cols=167 Identities=12% Similarity=0.120 Sum_probs=101.9
Q ss_pred HHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCChHHHHHHHHHhh
Q 005174 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF----EEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 355666667888999999887644 234556667766655544 44555778888887777777665
Q ss_pred ccCc--HHHHHHHHHHHH---HHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 005174 525 HSGL--VVEGQKQFERMT---SIYGIFP--QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597 (710)
Q Consensus 525 ~~g~--~~~a~~~~~~~~---~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~ 597 (710)
.... .+. ..+.+++. .++|-.| ++.....+...|.+.|++.+|...|= ....+....+..++.-+...+..
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 5442 111 22222221 1224333 36777889999999999999998884 23333346666666555444332
Q ss_pred HHHHHHHHHHHhhCCCCCchH-HHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 598 GIGEWAAEKLLETRPENSGYY-VLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.....| ...+--|...|+...|..++....+
T Consensus 184 ---------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 ---------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 122222 2333457788899999888776654
No 251
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=85.05 E-value=21 Score=38.09 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 005174 214 ALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYAS 252 (710)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 252 (710)
++|-.+.|+|++++|.++.++... .-...+-..+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 567778899999999998877632 222356666666664
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.87 E-value=6.4 Score=29.85 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
+.-+..+-++.+....+-|++....+.+.||.+.+++..|.++++.++.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44466677777777788999999999999999999999999999999876 3344556776664
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.84 E-value=11 Score=28.44 Aligned_cols=85 Identities=14% Similarity=0.031 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005174 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 326 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++... +.|..+++...+..+..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4555555555555443 333323334557788999999999999999999999887654 778888888888888877
Q ss_pred CCCCcHHHHH
Q 005174 406 GVEPNYVTIA 415 (710)
Q Consensus 406 g~~p~~~t~~ 415 (710)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55554443
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.63 E-value=11 Score=41.10 Aligned_cols=53 Identities=8% Similarity=-0.003 Sum_probs=37.5
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 005174 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372 (710)
Q Consensus 319 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (710)
.|...|+++.|..+-...+... +.+-.+|..|..+|.+.|+++.|.-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3555677777777776665543 4455677888888888888888888877776
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.43 E-value=11 Score=28.37 Aligned_cols=85 Identities=14% Similarity=0.018 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005174 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 326 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++... +.|..+++...+..+..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4555556555555443 333323334557789999999999999999999999888654 678888888888788777
Q ss_pred CCCCcHHHHH
Q 005174 406 GVEPNYVTIA 415 (710)
Q Consensus 406 g~~p~~~t~~ 415 (710)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55544443
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.07 E-value=6.8 Score=29.70 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=39.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 574 ~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
.+...|++.+..+.+.||++.+|+..|.+.++-+.....+....|-.+.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3457799999999999999999999999999988877655555566554
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.35 E-value=22 Score=41.29 Aligned_cols=143 Identities=11% Similarity=0.043 Sum_probs=94.7
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC-------------------
Q 005174 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR------------------- 476 (710)
Q Consensus 416 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------- 476 (710)
.++..|...+..+.+.++... ++.+....-.+..+|..+|++++|.+.|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 345556666666666654432 4455555556667888899999999999876421
Q ss_pred -------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--H--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 005174 477 -------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH--V--TMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545 (710)
Q Consensus 477 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 545 (710)
-..-|..++..+.+.+.++.++++-+...+....-+. . .|..++.++...|++++|...+..+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--- 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--- 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---
Confidence 0113566778888888888888887776653211111 1 4677888888899999998888776532
Q ss_pred CCChhHHHHHHHHHHhcCCHHH
Q 005174 546 FPQLEHFACMVDLYGRAGLLNK 567 (710)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~~ 567 (710)
.--......||..++..|..++
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhh
Confidence 2235667777777777666544
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.31 E-value=45 Score=33.76 Aligned_cols=95 Identities=8% Similarity=-0.004 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCC--CC--hh
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKN--QIKPD---HVTMVAVLSACSHSGLVVEGQKQFERMTSIY-GIF--PQ--LE 550 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~--p~--~~ 550 (710)
...|...|...|++.+|.+++.++... |.... ...+...+..|...+++..|..++.++.... ... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999998753 22211 2256667778899999999999999875421 122 22 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
.+.+++..+...+++.+|-+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788899999999999998877765
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.55 E-value=9.4 Score=38.07 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH----HhCCCCChhHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS----IYGIFPQLEHFA 553 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 553 (710)
...++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|+.... ..|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344667778889999999888888764 244677888999999999999999988888654 348888865543
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.73 E-value=5.5 Score=33.62 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=64.7
Q ss_pred CCCCCChH--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 005174 507 NQIKPDHV--TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL-------EHFACMVDLYGRAGLLNKAKEIITKM-- 575 (710)
Q Consensus 507 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-- 575 (710)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555543 33444566777888888888877765543334442 35667778888888888888888764
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 576 -----PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 576 -----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
+..++. ..++ . ...... .-.. .+.+.+.-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~--~~~~-~---~~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPST-G---NSASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--cccc-c---ccCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 1011 0 000000 0000 1223456677999999999999999985543
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.48 E-value=4.2 Score=40.62 Aligned_cols=58 Identities=9% Similarity=-0.051 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 585 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..++.++...|+.+.+...++.+...+|-+-..|..+..+|.+.|+..+|.+.+...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666677888888888888888888887788888888888888888888777654
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.98 E-value=66 Score=37.33 Aligned_cols=139 Identities=8% Similarity=-0.029 Sum_probs=79.9
Q ss_pred HHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------------------
Q 005174 181 VLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER---------------------- 238 (710)
Q Consensus 181 ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------- 238 (710)
++..+...+..+.++.+... .+.+....-.+..+|..+|++++|...|.+.-..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHHHhhh----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 33444444555554443332 2334444345566788888888888888776210
Q ss_pred ----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc----eehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 005174 239 ----DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN----VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310 (710)
Q Consensus 239 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 310 (710)
-..-|..++..+-+.+.++.+.++-....+....-+ ...|..+...+...|++++|...+-.+.....+ .
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence 012356677777777887777777665554321111 124677778888888888888887777655433 2
Q ss_pred hHHHHHHHHhhccCC
Q 005174 311 VATVIGLGACSHVGA 325 (710)
Q Consensus 311 ~t~~~~l~~~~~~~~ 325 (710)
..+..++...+..+.
T Consensus 972 ~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 334444444444443
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.72 E-value=88 Score=34.89 Aligned_cols=218 Identities=9% Similarity=-0.086 Sum_probs=108.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCC----Ch--hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CC---cH-HHHHHHH-HH
Q 005174 354 MYSRCKDLRHAYILFKMTAEK----SI--ITWNSMLSGYTHLDCAEESAFLFREMFRSGV--EP---NY-VTIASIL-PL 420 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p---~~-~t~~~ll-~~ 420 (710)
+....|+.+++..+++.-... +. ..-..+.-|....|..+++..++...+...- .- +. ......+ -+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345667777788877765541 21 2233344556666766677777777655321 00 11 1111111 12
Q ss_pred HhccCc-hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-CChh--HHHHHHHHHHhcCChHH
Q 005174 421 CARVAN-LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-RDEV--TYTSLIAGYGIQGEGRV 496 (710)
Q Consensus 421 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~~~ 496 (710)
....|. -+++...+..++....-.......-+|.-.|.-.|+-+....++..+.+ .+.. -.-.+.-++...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 222232 2344454555444321000011222333445556776666766665432 2222 22333344446788888
Q ss_pred HHHHHHHHHHCCCCCChHHHH---HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 497 ALKLFEEMNKNQIKPDHVTMV---AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573 (710)
Q Consensus 497 A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 573 (710)
+..+.+.+... ..|. .-|. .+.-+|+..|+.....+++..+.+. ...++.....+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888877763 1222 2222 2344667778877777788777653 22233333333334444666665666665
Q ss_pred hC
Q 005174 574 KM 575 (710)
Q Consensus 574 ~m 575 (710)
.+
T Consensus 619 ~L 620 (963)
T 4ady_A 619 LL 620 (963)
T ss_dssp TG
T ss_pred HH
Confidence 44
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.19 E-value=16 Score=29.38 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 494 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
.-+..+-++.+....+-|++......+.+|.+.+++..|.++|+.++.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 4455666677777788999999999999999999999999999999876 4455666777764
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.66 E-value=40 Score=31.04 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=62.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN 566 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 566 (710)
...+.|+.++|+.....-++.. +-|...=..++.-++-.|+++.|.+-++...+ +.|+...-..+..-+.++ +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---E 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---A 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---H
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---H
Confidence 3456677777777766666542 22444555566666777777777777776654 355532222111222221 1
Q ss_pred HHH-HHHHhC--C-CCCCHHHH-HHHHHH--HHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 567 KAK-EIITKM--P-YTPTSAMW-ATLLGA--CQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 567 ~A~-~~~~~m--~-~~p~~~~~-~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
.+. ++|.-- | ..-....| ..|+.+ ....|+.+.|...-..+.+.-|..++.
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 111 222211 1 00112223 334444 334577777777777777776665443
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.51 E-value=83 Score=33.39 Aligned_cols=458 Identities=8% Similarity=-0.055 Sum_probs=232.4
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhC-CCCCCchhhHH
Q 005174 37 RINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLVPKL 115 (710)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 115 (710)
...+.....+ .+.|++..+..+-..+....+.|- . .|..+...... ... .++...+.+.. .+.....-+.-
T Consensus 7 ~~~~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~y-l--~y~~l~~~l~~-~~~---~ev~~Fl~~~~~~p~~~~Lr~~~ 78 (618)
T 1qsa_A 7 RSRYAQIKQA-WDNRQMDVVEQMMPGLKDYPLYPY-L--EYRQITDDLMN-QPA---VTVTNFVRANPTLPPARTLQSRF 78 (618)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHSGGGTTSTTHHH-H--HHHHHHHTGGG-CCH---HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHhhcCCCcHHH-H--HHHHHHhCccc-CCH---HHHHHHHHHCCCChhHHHHHHHH
Confidence 3445555554 446788777776665533222111 1 34333332221 122 24444444432 11112333445
Q ss_pred HHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHH
Q 005174 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 195 (710)
+..+.+.+++......+.. +..+...-.....+....|+..+|......+-..|.. .+..+..++..+...|.+.
T Consensus 79 l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt--- 153 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQD--- 153 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSC---
T ss_pred HHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCC---
Confidence 6677778888888886665 3333333444667788889988888888877665532 4455666666655544432
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCce
Q 005174 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275 (710)
Q Consensus 196 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 275 (710)
+..++. -+......|+...|..+...++.........++..+.+-.. +...... +.++.
T Consensus 154 ------------~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~-----~~~~~ 212 (618)
T 1qsa_A 154 ------------PLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFART-----TGATD 212 (618)
T ss_dssp ------------HHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHH-----SCCCH
T ss_pred ------------HHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhc-----cCCCh
Confidence 222332 23555667888888888887743332233444443332222 2222211 12222
Q ss_pred eh---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHH----HHHHHhhccCChHHHHHHHHHHHhhcCCCchhHH
Q 005174 276 IT---WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATV----IGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348 (710)
Q Consensus 276 ~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~----~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 348 (710)
.. +..-+.-+.+ .+.+.|...+........ .+..... .+.......+....+...+...... ..+..+.
T Consensus 213 ~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 288 (618)
T 1qsa_A 213 FTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLI 288 (618)
T ss_dssp HHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHH
T ss_pred hhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHH
Confidence 21 1112222333 377888888888765432 2322222 2222333344233444444443332 2333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 425 (710)
.-.+....+.|+++.|...|+.|.... ....--+..++...|+.++|..+|+.+... .+ |-.++.+ .+.|
T Consensus 289 e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~---fYg~lAa-~~Lg 361 (618)
T 1qsa_A 289 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIG 361 (618)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC---hHHHHHH-HHcC
Confidence 444455567899999999999998642 222334556778899999999999998752 22 2222221 1222
Q ss_pred chHHHHHHHHHHHHhCCCCC---chHH---HhHHhhhhhhcCChhHHHHHHhhcCC-CChhHHHHHHHHHHhcCChHHHH
Q 005174 426 NLQHGKEFHCYILRRAMFNE---HLLL---WNSLVEMYARSGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGIQGEGRVAL 498 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~---~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 498 (710)
..... ......+ .... .-.-+..+...|....|...+..+.+ .+......+.......|.++.++
T Consensus 362 ~~~~~--------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v 433 (618)
T 1qsa_A 362 EEYEL--------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSV 433 (618)
T ss_dssp CCCCC--------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCC--------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHH
Confidence 11000 0000111 0001 11223456678999999888776653 34444444555556677888777
Q ss_pred HHHHHHHHCCC----CCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh
Q 005174 499 KLFEEMNKNQI----KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550 (710)
Q Consensus 499 ~~~~~m~~~g~----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 550 (710)
.........+. -| ..|..++...++.-.++...-.--...+. ++.|+..
T Consensus 434 ~~~~~~~~~~~~~~~~P--~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES-~f~p~a~ 486 (618)
T 1qsa_A 434 QATIAGKLWDHLEERFP--LAYNDLFKRYTSGKEIPQSYAMAIARQES-AWNPKVK 486 (618)
T ss_dssp HHHHHTTCTTCHHHHSC--CTTHHHHHHHHTTSSSCHHHHHHHHHHHH-TTCTTCB
T ss_pred HHHHHHHhhcchhhhCC--cchHHHHHHHHHHcCCCHHHHHHHHHHhC-CCCCCCc
Confidence 65544332210 01 13455565555554455433221122233 6777743
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.82 E-value=80 Score=31.93 Aligned_cols=58 Identities=5% Similarity=-0.000 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-----hHHHHHHHHhhccCChHHHHHHHHHH
Q 005174 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDS-----VATVIGLGACSHVGALKLGKEIHGSA 336 (710)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~t~~~~l~~~~~~~~~~~a~~i~~~~ 336 (710)
..|...+...|++.+|.+++.++...-...+. ..+..-++.|...+++..+..+...+
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34666777777777777777776532111111 12333444555555555555555544
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.68 E-value=19 Score=28.95 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=42.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 568 AKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
++.-+-.+...|++.+..+-+.+|++.+|+..|.+.++-+.....+....|-.+.
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3333344567899999999999999999999999999998877655556666554
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.23 E-value=7.9 Score=35.67 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=37.2
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 557 DLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
..+.+.|.+++|++....- ...| |...-..|+.-++..|+.++|..-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3455677777777655443 3344 44444556666777777777777777777777763
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=68.73 E-value=37 Score=33.01 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=44.5
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCChH
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRRD---EVTYTSLIAGYGIQGE--GRVALKLFEEMNKNQIKPDHV 514 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 514 (710)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+...+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 5778888889999999999999998763 2344455555554333 345777787777776554443
No 271
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=67.80 E-value=5.5 Score=29.12 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=30.7
Q ss_pred chhhHHHHHHHHHHHHHHcCcccCCccc-------cHHHHHHhhC
Q 005174 673 QAQEIYPLLGGLTELMKDAGYVVKEEFC-------SEEEIVEEIG 710 (710)
Q Consensus 673 ~~~~~~~~l~~l~~~~~~~g~~~~~~~~-------~~~~~~~~~~ 710 (710)
+..+|+..+++-..++|..||.||.-.+ ..+++.+|.|
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIiL~G~eayef~~e~v~~e~g 58 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLKKEME 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEECHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEcHHHHHHHHHHHhHhhc
Confidence 5567888888899999999999998765 5667777765
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.92 E-value=85 Score=28.75 Aligned_cols=75 Identities=19% Similarity=0.098 Sum_probs=35.8
Q ss_pred HHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceeh--HHHHHHHHHhcCCh
Q 005174 218 MYGKFGQVDVARRLFDKML----ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT--WNTIAGGCLRTGNF 291 (710)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~ 291 (710)
..+..|+.+-+..+++... ..|...++.+. ..+..++.....++++.+.+.|..++... -.+.+...++.|+.
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 232 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 3445567776666666521 11222223332 23345555445566666666666655432 11233344445554
Q ss_pred HH
Q 005174 292 KG 293 (710)
Q Consensus 292 ~~ 293 (710)
+-
T Consensus 233 ~~ 234 (285)
T 1wdy_A 233 GL 234 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 273
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=62.54 E-value=76 Score=31.76 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=48.7
Q ss_pred HHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCC--chhhHHHHHHHccCC
Q 005174 47 FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP--VLVPKLVTFYASFSL 124 (710)
Q Consensus 47 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 124 (710)
-+..|+.+ +++.+.+.|..|+.........+...+..|+.+ +.+.+++.|...+. ....+.+...++.|+
T Consensus 21 Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 21 ASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 34455554 344444455554432111122233333445543 44445555544332 122344555566777
Q ss_pred hhHHHHhHhhCCCCCC---ccHHHHHHHHHhCCCchHHHHHH
Q 005174 125 YNNACFLVENSNIRYP---LPWNLLISLYVRDGFYAEALCVY 163 (710)
Q Consensus 125 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~l~ 163 (710)
.+-..-+++.-..++. .-++. +...++.|+.+-+..++
T Consensus 93 ~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll 133 (437)
T 1n11_A 93 TNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALL 133 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH
Confidence 7777777765433322 22233 33334556655444443
No 274
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.14 E-value=1.2e+02 Score=28.77 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHHH
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDC--AEESAFLFREMFRSGVEPNYVT 413 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t 413 (710)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+....++..+...|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4678888888999999999999987662 2344455555555433 4567788888887776555444
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.73 E-value=30 Score=34.87 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=68.9
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCChHHH--
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRR------DEVTYTSLIAGYGIQGEGRVALKLFEEMNK---NQIKPDHVTM-- 516 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~-- 516 (710)
.+...+.+.|.++|+++.|.+.|.++... -...+-..|..+...+++..+...+.+... .+-.|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677889999999999999999887632 345677788888899999999999888754 3333332211
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhC
Q 005174 517 VAVLSACSHSGLVVEGQKQFERMTSIYG 544 (710)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 544 (710)
..-...+...+++..|.+.|-+....+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1111224567889999999988887643
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.73 E-value=1.4e+02 Score=31.95 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh--
Q 005174 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR-- 357 (710)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-- 357 (710)
.....+.-.|+++.|++++-+. ...+.+.+.+.+..+.-.+- ...++..- .+ .+ ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 3455667789999999988755 35566777777766554442 11111110 00 11 1115667777765
Q ss_pred -cCCHHHHHHHHHhc
Q 005174 358 -CKDLRHAYILFKMT 371 (710)
Q Consensus 358 -~g~~~~A~~~~~~~ 371 (710)
..+..+|.+.|-.+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 46777777766555
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.25 E-value=87 Score=28.66 Aligned_cols=58 Identities=7% Similarity=-0.217 Sum_probs=29.3
Q ss_pred hHHHHHHHccCChhHHHHhHhhCCCCCCc---cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC
Q 005174 113 PKLVTFYASFSLYNNACFLVENSNIRYPL---PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174 (710)
Q Consensus 113 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~ 174 (710)
++.+...++.|+++....+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 34455566777777777777654333222 1122344444555543 3344445555544
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.39 E-value=1.2e+02 Score=28.08 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHH
Q 005174 216 VSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294 (710)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 294 (710)
+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++.-..-.. .|..-++..+...+..|+.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~--- 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI--- 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH---
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH---
Confidence 33444566666666666554332 221223334445566666655444443222111 1212222223333344443
Q ss_pred HHHHHHHHhCCCCCChhH
Q 005174 295 LELLSRMRTQETYLDSVA 312 (710)
Q Consensus 295 ~~~~~~m~~~~~~p~~~t 312 (710)
++++.+.+.|..++...
T Consensus 209 -~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 -EMLQALFKYDINIYSAN 225 (285)
T ss_dssp -HHHHHHTTSCBCSTTTT
T ss_pred -HHHHHHHHcCCCCCCCC
Confidence 34455556676666543
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.35 E-value=62 Score=28.74 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCCCCch---hhHHHHHHHccCChhHHHHhHhh
Q 005174 95 QLHACAIALGLEKNPVL---VPKLVTFYASFSLYNNACFLVEN 134 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 134 (710)
++.+.+++.|..++... ..+.+...+..|+.+-...+++.
T Consensus 56 ~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 56 DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc
Confidence 34444555553333211 23344445556666666666554
No 280
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.32 E-value=1.1e+02 Score=26.52 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=35.4
Q ss_pred CchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh
Q 005174 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
++..+-...+.++.+.|..+....+.+.+..++...-...+.++...|..+ +...+.++.+ .+|...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344444455555555555444444444444445444444455555554432 3333333332 234444444444444
Q ss_pred ccCc
Q 005174 525 HSGL 528 (710)
Q Consensus 525 ~~g~ 528 (710)
+.+.
T Consensus 169 ~~~~ 172 (211)
T 3ltm_A 169 EIGG 172 (211)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 4443
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.97 E-value=33 Score=34.60 Aligned_cols=63 Identities=13% Similarity=-0.036 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHH
Q 005174 39 NLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAI 101 (710)
Q Consensus 39 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 101 (710)
.+..+..-|.+.|++++|.+.|.+++.....+......+..+++.|...+++..+......+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344455556666666666666666665544444444455555666655566655555555443
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.21 E-value=99 Score=27.00 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 529 VVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 574 (710)
..+...+|..|... ||--. ...|......|-..|++++|.++|+.
T Consensus 95 ~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 95 FHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666666666555 55554 44556666666666666666666654
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.87 E-value=95 Score=26.62 Aligned_cols=15 Identities=7% Similarity=-0.039 Sum_probs=8.0
Q ss_pred HccCChhHHHHhHhh
Q 005174 120 ASFSLYNNACFLVEN 134 (710)
Q Consensus 120 ~~~g~~~~A~~~~~~ 134 (710)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 445555555555544
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.72 E-value=82 Score=27.52 Aligned_cols=59 Identities=14% Similarity=0.296 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI 485 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 485 (710)
......+|..+...|-...-...|......+...|++.+|.++|+.-.+.+......|.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 45666666666666633444556666666666777777777777655544444444333
No 285
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.05 E-value=1.4e+02 Score=28.32 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 572 ITKMPYTPT--SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 572 ~~~m~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
|...+..|. ..++++-++.+.+++|+..|....++++++.|... ..++|.++......
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~ 255 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADS 255 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHT
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhc
Confidence 334445553 45677777889999999999999999999998521 34567776666543
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.51 E-value=1.3e+02 Score=26.47 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=40.1
Q ss_pred ccCchHhHHHHHHHHHHhCCCCCC--chhhHHHHHHHccCChhHHHHhHhhCCCCCCc----cHHHHHHHHHhCCCchHH
Q 005174 86 KVKALAQGKQLHACAIALGLEKNP--VLVPKLVTFYASFSLYNNACFLVENSNIRYPL----PWNLLISLYVRDGFYAEA 159 (710)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A 159 (710)
..|+.+ +.+.+++.|..++. ....+.+...++.|+.+-+..+++.-...+.. -++. +...+..|+.+
T Consensus 18 ~~g~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~~-- 90 (240)
T 3eu9_A 18 QYGIYE----RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQGHLS-- 90 (240)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH-HHHHHHHTCHH--
T ss_pred HcCChH----HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh-hHHHHHcCCHH--
Confidence 345543 34445555544432 22334566667778887777777664433221 1223 33334445543
Q ss_pred HHHHHHHHhCCCCCCc
Q 005174 160 LCVYKQMQSRRIRGDN 175 (710)
Q Consensus 160 ~~l~~~m~~~g~~p~~ 175 (710)
+++.+.+.|..++.
T Consensus 91 --~v~~Ll~~g~~~~~ 104 (240)
T 3eu9_A 91 --MVVQLMKYGADPSL 104 (240)
T ss_dssp --HHHHHHHTTCCTTC
T ss_pred --HHHHHHHcCCCCcc
Confidence 33444455555443
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.18 E-value=94 Score=25.75 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHHH
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDC--AEESAFLFREMFRSGVEPNYVT 413 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t 413 (710)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3678888888999999999999987652 2344455555555332 4567788888887776555443
No 288
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=46.11 E-value=2.3e+02 Score=27.93 Aligned_cols=289 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHh-CCChHHHHHHHHHHHHcCCCCceehHH
Q 005174 209 LFVHNALVSMYGKFGQVDVARRLFDKMLE--------RDAVSWNTMISAYAS-KGLWKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
......|...|.+.|+.++..+++..... +....-..+|..+.. .+..+.-.++..+..+. -.-+..+|-
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEW-AKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_pred ------HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhH-----HHHHHHHhhccCChHHHHHHHHHHHhhcCCC-chhH
Q 005174 280 ------TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA-----TVIGLGACSHVGALKLGKEIHGSAVRGCYGE-YENV 347 (710)
Q Consensus 280 ------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-----~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~ 347 (710)
-++..|...|++.+|..++.++.+.--..|..+ +..-+..+...+++..++..+.......-.. ....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Q ss_pred HHHHHHHHH------hcCCHHHHHHHHHhc---------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 005174 348 RNALITMYS------RCKDLRHAYILFKMT---------AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV 412 (710)
Q Consensus 348 ~~~li~~~~------~~g~~~~A~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 412 (710)
..+-++.+. ..+++..|...|-+. +.......-.++.+.......+--.-+-......-..|...
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC-ChhHHHHHHHHHHhc
Q 005174 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQ 491 (710)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 491 (710)
.+..++.+ ...+++.....++...... +..|......+-..+-+ --...+..+.+| ..+++..|...+.-
T Consensus 258 ~l~~L~~a-~~~~dl~~f~~iL~~~~~~--l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 258 AMKSVAEA-SHKRSLADFQAALKEYKKE--LAEDVIVQAHLGTLYDT-----MLEQNLCRIIEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHSTTT--TTTSHHHHHHHHHHHHH-----HHHHHHHHHHTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHHH--HhcChHHHHHHHHHHHH-----HHHHHHHHHhHhhceeeHHHHHHHHCc-
Q ss_pred CChHHHHHHHHHHHHCC
Q 005174 492 GEGRVALKLFEEMNKNQ 508 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~g 508 (710)
..+++...+-+|...|
T Consensus 329 -s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDK 344 (394)
T ss_dssp -CHHHHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHHHHCC
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.05 E-value=69 Score=25.68 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=40.4
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRRD---EVTYTSLIAGYGIQGE--GRVALKLFEEMNKNQIKPD 512 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 512 (710)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4667778888888889888888887652 2334444455554432 3556677777776665433
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.98 E-value=1.2e+02 Score=24.28 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHHH
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDC--AEESAFLFREMFRSGVEPNYVT 413 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t 413 (710)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3678888888999999999999987652 2344455555655542 4567888888888776555443
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.95 E-value=1.3e+02 Score=24.98 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=4.8
Q ss_pred CChHHHHHHHHHH
Q 005174 492 GEGRVALKLFEEM 504 (710)
Q Consensus 492 g~~~~A~~~~~~m 504 (710)
|++.+|.++|+.-
T Consensus 115 g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 115 GELQHASAVLQRG 127 (152)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.74 E-value=2.6e+02 Score=26.41 Aligned_cols=196 Identities=9% Similarity=0.056 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh--hHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHH---HHHHHHHHH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAEKSI--ITWNSMLSGYTHLDC--AEESAFLFREMFRSGVEPNYV---TIASILPLC 421 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~ 421 (710)
..++.-|...|+.++|...++++..+.- ..-..+|..-...++ -+.+-.++..+.. ++-+... .|..++..+
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Confidence 5677888888999999999988876532 122223332222322 3345556666654 3333322 233444433
Q ss_pred hccC-chHHH----HHHHHHHHHhCCCCCchHHHhHHhhhhhhcCC--hhHHHHHHhh------cCC----C----Ch--
Q 005174 422 ARVA-NLQHG----KEFHCYILRRAMFNEHLLLWNSLVEMYARSGK--VPEAKSVFDL------MSR----R----DE-- 478 (710)
Q Consensus 422 ~~~~-~~~~a----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~------~~~----~----~~-- 478 (710)
.... +...| -.++.+++..+.++|... ....-..-...|. +..|..++.. +.+ + ..
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l-~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYI-DSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTT-GGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHH-HHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 3222 22223 334444555553444321 1111100000111 2333333311 000 0 11
Q ss_pred --hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc--HHHHHHHHHHHHHHhCCCCC
Q 005174 479 --VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL--VVEGQKQFERMTSIYGIFPQ 548 (710)
Q Consensus 479 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~ 548 (710)
...+.++.-|...|+.++|...++++....+. .......+..+.-+.++ .+....++..+.+. |+-+.
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~ 236 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITV 236 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCH
Confidence 14567888888899999999999888521111 12234445555555432 34556677776655 44443
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.74 E-value=2e+02 Score=25.25 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=5.9
Q ss_pred HccCChhHHHHhHh
Q 005174 120 ASFSLYNNACFLVE 133 (710)
Q Consensus 120 ~~~g~~~~A~~~~~ 133 (710)
+..|+.+-...+++
T Consensus 54 ~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 54 VITTLPSVVRLLVT 67 (241)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444443
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.44 E-value=2.1e+02 Score=25.21 Aligned_cols=89 Identities=8% Similarity=-0.026 Sum_probs=50.8
Q ss_pred HHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCc--hhhHHHHHHHc
Q 005174 44 LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV--LVPKLVTFYAS 121 (710)
Q Consensus 44 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 121 (710)
+..-+..|+.+-...+++.+...|..++.....-...+..++..|+. ++.+.+++.|..++.. ...+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 34456778888877777777666655443211111223333344554 4566667777555432 22344555567
Q ss_pred cCChhHHHHhHhhCC
Q 005174 122 FSLYNNACFLVENSN 136 (710)
Q Consensus 122 ~g~~~~A~~~~~~~~ 136 (710)
.|+.+-...+++...
T Consensus 89 ~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 89 HRSPTCLRALLDSAA 103 (241)
T ss_dssp TTCHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHcCC
Confidence 788887777777654
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=37.31 E-value=2e+02 Score=24.64 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=54.2
Q ss_pred CchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh
Q 005174 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
++..+-...+.++.+.|..+....+...+..++...-...+.++...++. ++...+.++.. .++...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444555555555544444444444455555555555555555543 33444444443 345555555555665
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 563 (710)
..|. .++...+..+... ++...-...+.++.+.+
T Consensus 164 ~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 164 EIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHHCC
T ss_pred HhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHHHH
Confidence 5554 3445555555443 44444555555555443
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.98 E-value=62 Score=26.89 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=39.3
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRRD---EVTYTSLIAGYGIQGE--GRVALKLFEEMNKNQIKP 511 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 511 (710)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4667778888888888888888887652 2334444445544322 345666777776665443
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.83 E-value=98 Score=27.93 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=17.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHh
Q 005174 146 LISLYVRDGFYAEALCVYKQMQS 168 (710)
Q Consensus 146 li~~~~~~~~~~~A~~l~~~m~~ 168 (710)
-+..+....++++|+.+.++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 36777888888888888877654
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.97 E-value=2.2e+02 Score=24.54 Aligned_cols=162 Identities=9% Similarity=0.031 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHH
Q 005174 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429 (710)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 429 (710)
..+..+.+.|..+....+.+.+..++...-...+.++.+.+..+ +...+..+.. .++...-...+.++...++.+.
T Consensus 38 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~ 113 (211)
T 3ltm_A 38 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERA 113 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH
Confidence 33334444444333333333344444444444455555555432 3333333332 3555555556666666665433
Q ss_pred HHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
...+.. +. -.++..+-...+.++.+.|..+....+...+..++...-...+.++.+.+. .++...+.++.+.
T Consensus 114 ~~~L~~-~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d-- 185 (211)
T 3ltm_A 114 VEPLIK-AL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET-- 185 (211)
T ss_dssp HHHHHH-HT----TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH--
T ss_pred HHHHHH-HH----hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC--
Confidence 222222 22 245666667777777777776555555555556676666667777777765 4555556565542
Q ss_pred CCChHHHHHHHHHhh
Q 005174 510 KPDHVTMVAVLSACS 524 (710)
Q Consensus 510 ~p~~~t~~~ll~a~~ 524 (710)
++...-...+.++.
T Consensus 186 -~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 186 -GTGFARKVAVNYLE 199 (211)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHH
Confidence 34443333344433
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.52 E-value=1.1e+02 Score=27.55 Aligned_cols=88 Identities=9% Similarity=0.044 Sum_probs=46.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--CCCCC----ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNK--NQIKP----DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
-++.+....++++|..++++..+ .++++ +.......+..-.....-.-+..+.+.+ . -.++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHHH
Confidence 35566667777777777766543 12222 1111222222222222222333344433 2 1445556667778
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 005174 558 LYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m 575 (710)
.+.+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888999999998887543
No 300
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.44 E-value=2.3e+02 Score=24.62 Aligned_cols=59 Identities=3% Similarity=0.002 Sum_probs=39.3
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc-----hHHHHHHHHHHHHhC
Q 005174 382 MLSGY---THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN-----LQHGKEFHCYILRRA 441 (710)
Q Consensus 382 li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 441 (710)
+|+++ .+..+++.|+-.+.+|++.| .|....=..++.+....|. +..+...++....-|
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 83 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLG 83 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 44444 45688999999999999999 7777766666667666654 233334444444444
No 301
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.32 E-value=2e+02 Score=23.80 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 005174 497 ALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547 (710)
Q Consensus 497 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 547 (710)
+.++|..|...|+--. +..|......+...|++.+|.++|+.-.+. +-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 4555555555444333 223333444444555555555555554443 3344
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.97 E-value=61 Score=29.51 Aligned_cols=54 Identities=11% Similarity=-0.097 Sum_probs=30.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCccc-------HHHHHHHHc--ccCCchHHHHHHHH
Q 005174 147 ISLYVRDGFYAEALCVYKQMQSRRIRGDNFT-------YPSVLKACG--EMMDVDFGRVVHSC 200 (710)
Q Consensus 147 i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~ 200 (710)
+...++.|+.+....+++.+.+.|..++... .+.|..|.. ..|+.+.++.+.+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3444566777777777777666666555332 233333332 45666666555554
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.88 E-value=4e+02 Score=27.26 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=45.8
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCCCh-h------HHH-HHHHHHHhcCChHHHHHHHHHHHHC
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE-V------TYT-SLIAGYGIQGEGRVALKLFEEMNKN 507 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~------~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 507 (710)
..++|.++..|...+.++.|..+..+..-|.. . .|. -+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56788889999999999999999998875522 1 222 2345667788999999998887754
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.59 E-value=1.7e+02 Score=26.97 Aligned_cols=17 Identities=0% Similarity=0.163 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCCCceeh
Q 005174 261 QLFVEMQEEGVEVNVIT 277 (710)
Q Consensus 261 ~~~~~m~~~g~~p~~~~ 277 (710)
++.+.+.+.|..++...
T Consensus 209 ~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 34445556676666543
No 305
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.38 E-value=3.2e+02 Score=26.15 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCcH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAEKSI---ITWNSMLSGYTHLD-CAEESAFLFREMFRSGVEPNY 411 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~ 411 (710)
..++.=|...|+.++|.+.++++..|.- .....+..++-+.. ..+.+..++..+.+.|+-+..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~ 81 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTA 81 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHH
Confidence 6788888899999999999999876632 22233333332221 234566777777777654433
No 306
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.66 E-value=3.6e+02 Score=26.05 Aligned_cols=74 Identities=9% Similarity=0.029 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDC--AEESAFLFREMFRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 421 (710)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+....++..+...|+-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 5778888889999999999999887663 2344455555555433 456778888888877666555444444333
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.44 E-value=51 Score=24.83 Aligned_cols=38 Identities=24% Similarity=0.074 Sum_probs=30.5
Q ss_pred CChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHH
Q 005174 123 SLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160 (710)
Q Consensus 123 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 160 (710)
...+.|+++++.++.+++.+|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888999988888888999999887767665553
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.97 E-value=1.7e+02 Score=24.86 Aligned_cols=18 Identities=0% Similarity=0.078 Sum_probs=9.3
Q ss_pred HHHHHccCChhHHHHhHh
Q 005174 116 VTFYASFSLYNNACFLVE 133 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~ 133 (710)
+...+..|+.+-+..+++
T Consensus 76 l~~A~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLK 93 (201)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 333445556655555553
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.25 E-value=2.4e+02 Score=23.61 Aligned_cols=47 Identities=13% Similarity=-0.017 Sum_probs=34.8
Q ss_pred HHHHHHHHHh--hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 600 GEWAAEKLLE--TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 600 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
+..+++.+.. +.-.-+..|...+..|...|++.+|.++++.-.+.+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5566666654 4455677888888889999999999998887666554
No 310
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.92 E-value=3e+02 Score=24.16 Aligned_cols=46 Identities=13% Similarity=0.420 Sum_probs=35.1
Q ss_pred HHHHHH---HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 005174 381 SMLSGY---THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426 (710)
Q Consensus 381 ~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 426 (710)
.+|+++ .+..+++.|+-.+.+|++.|..|....=..++.+....|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 345555 3568899999999999999988888777777777666554
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.47 E-value=3.2e+02 Score=24.38 Aligned_cols=94 Identities=11% Similarity=-0.122 Sum_probs=51.6
Q ss_pred HHHHHhCCCchHHHHHHHHhHHhCCCCCchhh-----HHHHHHHHhc--ccCchHhHHHHHHHHHHhC---------CCC
Q 005174 44 LKDFAGRGNLSKAFEAFTRIRITAASHDVVLD-----SFAHIIFCCG--KVKALAQGKQLHACAIALG---------LEK 107 (710)
Q Consensus 44 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-----~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~ 107 (710)
+...++.|+.+....+++.+...|..++.... -.+.|..++. +.|+.+..+.+++.-...+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 34456778888888888877777766653310 1233333332 4567666666655443211 111
Q ss_pred CCchhhHHHHHHHccCChhHHHHhHhhCCC
Q 005174 108 NPVLVPKLVTFYASFSLYNNACFLVENSNI 137 (710)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 137 (710)
......+.+...+..|+.+-+..+++.-..
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 111233445555677888877777776433
No 312
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.04 E-value=4.3e+02 Score=26.00 Aligned_cols=173 Identities=12% Similarity=0.034 Sum_probs=81.3
Q ss_pred HHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCc--hhhHHHHHHHccCC
Q 005174 47 FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV--LVPKLVTFYASFSL 124 (710)
Q Consensus 47 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 124 (710)
-+..|+.+ +++.+.+.|..++.....-...+...+..|+. ++.+.+++.|..++.. ...+.+...++.|+
T Consensus 54 A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~ 125 (437)
T 1n11_A 54 AARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT----NMVKLLLENNANPNLATTAGHTPLHIAAREGH 125 (437)
T ss_dssp HHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH----HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred HHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 34556654 44444455554432110111223333345664 4556666777555432 23345566677899
Q ss_pred hhHHHHhHhhCCCCC---CccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc--HHHHHHHHcccCCchHHHHHHH
Q 005174 125 YNNACFLVENSNIRY---PLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFT--YPSVLKACGEMMDVDFGRVVHS 199 (710)
Q Consensus 125 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~ 199 (710)
.+-...+++.-...+ ..-++. +...+..|+.+ +.+.+.+.|..|+... -...+...+..++.+..+.+++
T Consensus 126 ~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 200 (437)
T 1n11_A 126 VETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVR----VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200 (437)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred HHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 998888887644322 222333 44445667654 3444555666555431 1122333344455443332222
Q ss_pred HHHhcCCChHHH--HHHHHHHHHhcCCHHHHHHHHhhc
Q 005174 200 CIDACHEWSLFV--HNALVSMYGKFGQVDVARRLFDKM 235 (710)
Q Consensus 200 ~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 235 (710)
.|..++... ....+...+..|+.+-+..+++.-
T Consensus 201 ---~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 201 ---RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp ---GTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ---CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 333322211 112233344566666666666543
No 313
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.01 E-value=3e+02 Score=24.00 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=9.8
Q ss_pred HHHHHHccCChhHHHHhHhh
Q 005174 115 LVTFYASFSLYNNACFLVEN 134 (710)
Q Consensus 115 l~~~~~~~g~~~~A~~~~~~ 134 (710)
.+...+..|+.+-+..+++.
T Consensus 47 ~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 47 PLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHhC
Confidence 33344445555555555544
No 314
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.68 E-value=2.8e+02 Score=23.49 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=52.6
Q ss_pred HhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceeh---HHHHHHHHHh-cCChHHH
Q 005174 220 GKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT---WNTIAGGCLR-TGNFKGV 294 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~-~g~~~~a 294 (710)
++.|+++....+++.-... +...-.+.+...+..|+.+.-.++.+-+.+.|..++... ++.|..++.. ..+....
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~ 93 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT 93 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhH
Confidence 4568887777777654322 101122445555667777666777777888887776532 2333333222 2334455
Q ss_pred HHHHHHHHhCCCCCCh
Q 005174 295 LELLSRMRTQETYLDS 310 (710)
Q Consensus 295 ~~~~~~m~~~~~~p~~ 310 (710)
.++.+.+.+.|..++.
T Consensus 94 ~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 94 TELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHTTCCSSS
T ss_pred HHHHHHHHHCCCCCCc
Confidence 6777777788776654
No 315
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=27.60 E-value=3.6e+02 Score=25.91 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=36.9
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCC-cchhhHHHHHHHHH
Q 005174 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN-VQAQEIYPLLGGLT 685 (710)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~l~~l~ 685 (710)
..-.|.+++..|.|.+++.||.+.|..... +.++-++ -++++||.++-++-
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~---------------------Vi~~YNY~reDeEIYKEf~eIA 346 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGY---------------------VAGKYNYSKDDEEMYKEFHEIA 346 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHTTSCCCGGGHHHHHHHHHHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHH---------------------HHHHcCCCccHHHHHHHHHHHH
Confidence 456789999999999999999999887653 1112222 36778999875543
No 316
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=27.49 E-value=3.5e+02 Score=26.62 Aligned_cols=51 Identities=12% Similarity=0.095 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCC-cchhhHHHHHHHHH
Q 005174 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSN-VQAQEIYPLLGGLT 685 (710)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~l~~l~ 685 (710)
..-.|.+++..|.|.+++.||.+.|..... +.++-++ -+++|||.++-++-
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~---------------------Vi~~YNY~reDeEIYKEf~eIA 368 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTAT---------------------VIQDYNYCREDEEIYKEFFEVA 368 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHTTSCCCGGGHHHHHHHHHHH
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHH---------------------HHHHcCCCcchHHHHHHHHHHH
Confidence 456789999999999999999999877653 1122233 46789999876544
No 317
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.61 E-value=3.2e+02 Score=23.72 Aligned_cols=45 Identities=16% Similarity=0.340 Sum_probs=34.0
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 005174 382 MLSGY---THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426 (710)
Q Consensus 382 li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 426 (710)
+|+++ .+..+++.|+-.+.+|++.|..|....=..++.+....|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 44454 3568899999999999999988887776666666665553
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.55 E-value=91 Score=23.40 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHH
Q 005174 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESA 396 (710)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 396 (710)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999988889999999998777765553
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.27 E-value=1.7e+02 Score=23.75 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 005174 257 KEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324 (710)
Q Consensus 257 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~ 324 (710)
.....+.+.+.+.|++++ ..-..++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 4 ~~~~~~~~~l~~~g~r~T-~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 4 HELKEALETLKETGVRIT-PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
No 320
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.25 E-value=3e+02 Score=23.37 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=69.3
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 527 (710)
.+-...+.++.+.|..+....+...+..++...-...+.++...++.+ +...+.++.. .+|...-...+.++.+.+
T Consensus 60 ~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 60 WVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 333344444445555444444455555666666666666777766643 3344444442 455555555566666555
Q ss_pred cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005174 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593 (710)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 593 (710)
.. ++...+..+.. .++..+-...+.++++.|.. ++...+..+-..++..+-...+.+..+
T Consensus 136 ~~-~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 136 DE-RAVEPLIKALK----DEDGWVRQSAADALGEIGGE-RVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp CG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 43 23333333332 35666666677777777653 344444443223455444444444443
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.21 E-value=5.1e+02 Score=29.16 Aligned_cols=86 Identities=6% Similarity=-0.220 Sum_probs=45.2
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CC-C----------------
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP--YT-P---------------- 579 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-p---------------- 579 (710)
++..|...|..+-+.++.. .+..+...-..+..+|..+|++++|.+.|++.. .. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 4555556666655443221 122232222345666667777777777777653 00 0
Q ss_pred ------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 580 ------TSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 580 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
....|..++..+..++-++.+.+..+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124455555566666666666666666653
No 322
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.69 E-value=1.8e+02 Score=29.81 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ---LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
...++.+++.|.+.+.+++|..+..+..--....++ ...+..+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 446778888888888888888888876310000111 112234566777788888888877764
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.54 E-value=3.3e+02 Score=25.95 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=19.7
Q ss_pred HHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHH
Q 005174 117 TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQ 165 (710)
Q Consensus 117 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~ 165 (710)
...+..|+.+-+..+++.-...+...-.+.+..-+..|+.+-+..+++.
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 3334445555555555443322221111222333344554444444444
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.49 E-value=1.8e+02 Score=23.90 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 005174 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324 (710)
Q Consensus 265 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~ 324 (710)
.+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 35566666542 233455555555666777777777777666666666555555544444
No 325
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=23.10 E-value=4.4e+02 Score=24.20 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 005174 211 VHNALVSMYGKFGQVDVARRLFDKMLER 238 (710)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 238 (710)
--|.|+.-|..+|+++.|.++|++++..
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 3488899999999999999999998764
No 326
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.09 E-value=6e+02 Score=26.11 Aligned_cols=67 Identities=6% Similarity=-0.117 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHH-----HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 578 TPTSAMWATLLGACQIHRNTGIGEW-----AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 578 ~p~~~~~~~l~~~~~~~g~~~~a~~-----~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+|...-..|-.-+..+|..++-.+ +...+.+..|++..+...|-.-|.+.|++-+|.+++-.+...
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 4455544455555555665432111 111222334667777888888899999999999998888765
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.69 E-value=1.6e+02 Score=23.60 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=33.7
Q ss_pred HHHcCCCCceehHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 005174 266 MQEEGVEVNVITWNTIAGGCLRTG-NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324 (710)
Q Consensus 266 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~ 324 (710)
|++.|++++. .-..++..+...+ ..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4556666553 2334455555555 56677777777777766666666555555444443
No 328
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.61 E-value=1.6e+02 Score=24.73 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=6.9
Q ss_pred cCChHHHHHHHHHHHHCC
Q 005174 491 QGEGRVALKLFEEMNKNQ 508 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g 508 (710)
.|++.+|.++|+.-++.+
T Consensus 109 ~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 109 RENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 333333333333333333
No 329
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.58 E-value=3.9e+02 Score=25.42 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=33.1
Q ss_pred HhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHH
Q 005174 220 GKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLE 296 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 296 (710)
+..|+.+....+++.-..+ |..-++. +...+..|+.+- ++.+.+.|..++...-.+.+...+..|+.+-+..
T Consensus 28 a~~g~~~~v~~Ll~~g~~~~~~d~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 102 (364)
T 3ljn_A 28 ARKGQTDEVRRLIETGVSPTIQNRFGCTA-LHLACKFGCVDT----AKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVA 102 (364)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHCCHHH----HHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCccccCCCCCcH-HHHHHHcCCHHH----HHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHH
Confidence 3446666555555542221 2222222 223334444432 2233333443333222223334445566555555
Q ss_pred HHHHHHhCC
Q 005174 297 LLSRMRTQE 305 (710)
Q Consensus 297 ~~~~m~~~~ 305 (710)
+++.....|
T Consensus 103 Ll~~~~~~~ 111 (364)
T 3ljn_A 103 LVEGAKERG 111 (364)
T ss_dssp HHHHHHHHT
T ss_pred HHHhccccC
Confidence 555433333
No 330
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.55 E-value=2e+02 Score=25.32 Aligned_cols=116 Identities=13% Similarity=0.085 Sum_probs=56.8
Q ss_pred HHHhCCCchHHHHHHHHhHHhCCCCCchhh-HHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCC--chhhHHHHHHHcc
Q 005174 46 DFAGRGNLSKAFEAFTRIRITAASHDVVLD-SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP--VLVPKLVTFYASF 122 (710)
Q Consensus 46 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 122 (710)
..+..|+.+ +++.+.+.|..++.... ....+..+ +..|+. ++.+.+++.|..++. ....+.+...+..
T Consensus 17 ~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 87 (237)
T 3b7b_A 17 AAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEA-AENNHL----EAVKYLIKAGALVDPKDAEGSTCLHLAAKK 87 (237)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH-HHTTCH----HHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred HHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHH-HHhCCH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence 334556654 45555556655443210 12233333 344565 445556666654433 2233455556677
Q ss_pred CChhHHHHhHhhCC-C---CCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 005174 123 SLYNNACFLVENSN-I---RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175 (710)
Q Consensus 123 g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~ 175 (710)
|+.+-+..+++.-+ . ++..-++.+ ...++.|+.+ +++.+.+.|..++.
T Consensus 88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~ 139 (237)
T 3b7b_A 88 GHYEVVQYLLSNGQMDVNCQDDGGWTPM-IWATEYKHVD----LVKLLLSKGSDINI 139 (237)
T ss_dssp TCHHHHHHHHTTTCCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred CCHHHHHHHHhCCCCCcccCCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCc
Confidence 88887777776542 1 222223333 3334455543 44455556655543
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.10 E-value=3.1e+02 Score=24.33 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--hCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 565 LNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE--TRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 565 ~~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
++.+.+.|...+ .+.|......-+.-.....+ +..+++.+.. +.-.-+..|...+..|...|++.+|.++++.-
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNYIDE---PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSC---HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHccCC---HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred HhCCCcC
Q 005174 642 RDLGVRK 648 (710)
Q Consensus 642 ~~~~~~~ 648 (710)
...+.++
T Consensus 177 i~~~A~P 183 (223)
T 4aez_C 177 KRMKAKP 183 (223)
T ss_dssp HHHTCBS
T ss_pred HHcCCcc
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.06 E-value=1.5e+02 Score=24.26 Aligned_cols=58 Identities=9% Similarity=0.124 Sum_probs=34.1
Q ss_pred HHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 005174 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324 (710)
Q Consensus 265 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~ 324 (710)
.+++.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-..|..+...|
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 345566665532 334445555555 5677788888877776666666555555544444
No 333
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.81 E-value=1.1e+02 Score=20.59 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHc-CCCCceehHHHHHHHH
Q 005174 257 KEAFQLFVEMQEE-GVEVNVITWNTIAGGC 285 (710)
Q Consensus 257 ~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 285 (710)
++|.+.|.+|++. ++. ...||...|...
T Consensus 3 eEae~aF~~lL~~~~V~-s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVD-STWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCC-SSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC-CCCcHHHHHHHh
Confidence 5667777776544 444 346777766666
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.44 E-value=6.7e+02 Score=25.26 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=48.6
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 005174 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411 (710)
Q Consensus 336 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 411 (710)
+.+.|++.....|..-.+.+...|++++|.++--..+. ++..+.+.+-..-...|+..-.+.+|..+.+.| +.+.
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~ 429 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNK 429 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCH
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccch
Confidence 44566766666666667778888888888887766554 455555554444445566666677777777666 3443
No 335
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.17 E-value=1.7e+02 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=13.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC
Q 005174 287 RTGNFKGVLELLSRMRTQETYLD 309 (710)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p~ 309 (710)
..|+.+.|+..|-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 34556666666666655554443
No 336
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=20.01 E-value=1.2e+02 Score=19.55 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHcCcccCCccccHHHHHHhhC
Q 005174 675 QEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEIG 710 (710)
Q Consensus 675 ~~~~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 710 (710)
.+++..+..+..+=++.|- +|.++++..-+.=|+|
T Consensus 10 ~~v~~~I~~iVe~r~qeGA-~dvs~Ssv~smLleLG 44 (52)
T 3omy_A 10 NNVYEQITDLVTIRKQEGI-EEASLSNVSSMLLELG 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHhh
Confidence 4677778888888888999 8999988887777776
Done!