Query 005175
Match_columns 710
No_of_seqs 602 out of 2842
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oy3_D Transcription factor in 100.0 9.4E-33 3.2E-37 283.2 12.0 209 5-251 2-265 (282)
2 3b7b_A Euchromatic histone-lys 100.0 8.1E-32 2.8E-36 270.5 15.1 211 3-251 2-217 (237)
3 1yyh_A HN1;, notch 1, ankyrin 100.0 8E-33 2.7E-37 282.9 7.7 212 3-251 1-230 (253)
4 3utm_A Tankyrase-1; tankyrase, 100.0 2.5E-31 8.4E-36 280.3 15.1 78 174-251 239-320 (351)
5 1k1a_A B-cell lymphoma 3-encod 100.0 1.8E-31 6.2E-36 267.7 13.3 210 5-251 2-223 (241)
6 2xai_A ASB-9, ankyrin repeat a 100.0 3.6E-31 1.2E-35 272.2 12.9 202 11-252 2-207 (261)
7 3d9h_A CDNA FLJ77766, highly s 100.0 8.1E-31 2.8E-35 273.9 14.3 210 4-252 51-263 (285)
8 4g8k_A 2-5A-dependent ribonucl 100.0 8.6E-31 3E-35 278.2 13.8 220 2-241 48-303 (337)
9 2xai_A ASB-9, ankyrin repeat a 100.0 2.4E-30 8.1E-35 266.1 16.2 208 2-251 26-245 (261)
10 1k1a_A B-cell lymphoma 3-encod 100.0 3.2E-30 1.1E-34 258.6 16.3 196 2-235 36-240 (241)
11 2f8y_A Notch homolog 1, transl 100.0 2.6E-30 9E-35 257.0 14.8 198 2-237 14-217 (223)
12 1s70_B 130 kDa myosin-binding 100.0 5.4E-31 1.8E-35 273.7 9.8 221 9-251 37-272 (299)
13 1wdy_A 2-5A-dependent ribonucl 100.0 2.5E-30 8.5E-35 264.2 14.5 213 2-251 28-260 (285)
14 3aji_A 26S proteasome non-ATPa 100.0 1.4E-30 4.9E-35 260.4 12.4 206 9-251 3-212 (231)
15 2dzn_A Probable 26S proteasome 100.0 2.1E-30 7.2E-35 258.2 12.5 203 12-251 2-215 (228)
16 1wdy_A 2-5A-dependent ribonucl 100.0 3.5E-30 1.2E-34 263.0 14.3 207 2-241 62-283 (285)
17 3ljn_A Hypothetical protein; a 100.0 4.3E-31 1.5E-35 283.5 7.9 210 2-251 10-251 (364)
18 3aji_A 26S proteasome non-ATPa 100.0 1.9E-30 6.6E-35 259.4 11.8 194 5-236 33-230 (231)
19 2rfa_A Transient receptor pote 100.0 1.9E-30 6.6E-35 260.0 10.5 192 11-239 2-225 (232)
20 4b93_B Ankyrin repeat domain-c 100.0 7.8E-30 2.7E-34 265.6 14.7 209 5-251 45-262 (269)
21 3kea_A K1L; tropism, ANK repea 100.0 6.6E-31 2.3E-35 274.8 6.4 198 3-242 22-226 (285)
22 4b93_B Ankyrin repeat domain-c 100.0 1.7E-30 5.8E-35 270.6 9.4 215 7-251 6-225 (269)
23 1yyh_A HN1;, notch 1, ankyrin 100.0 3.9E-30 1.3E-34 262.9 11.9 194 2-233 46-245 (253)
24 1n11_A Ankyrin; clathrin, BAND 100.0 3.3E-30 1.1E-34 283.1 12.0 213 1-251 3-219 (437)
25 4gpm_A Engineered protein OR26 100.0 3.9E-29 1.3E-33 243.3 18.1 157 14-208 6-162 (169)
26 3ljn_A Hypothetical protein; a 100.0 3.1E-30 1E-34 276.9 11.0 204 2-239 43-272 (364)
27 1ikn_D Protein (I-kappa-B-alph 100.0 9.5E-31 3.2E-35 263.7 6.5 209 6-251 2-226 (236)
28 1n11_A Ankyrin; clathrin, BAND 100.0 1.1E-29 3.7E-34 279.0 14.4 231 2-251 136-384 (437)
29 3b7b_A Euchromatic histone-lys 100.0 8E-29 2.7E-33 248.6 18.8 186 2-224 34-223 (237)
30 2fo1_E LIN-12 protein; beta-ba 100.0 1.9E-30 6.6E-35 281.4 6.9 221 2-251 114-353 (373)
31 3hra_A Ankyrin repeat family p 100.0 2.4E-29 8.3E-34 246.1 13.6 190 9-234 2-201 (201)
32 1oy3_D Transcription factor in 100.0 4.2E-29 1.4E-33 256.0 15.5 181 5-223 38-270 (282)
33 4g8k_A 2-5A-dependent ribonucl 100.0 2E-29 6.7E-34 267.8 13.2 214 2-239 115-329 (337)
34 3utm_A Tankyrase-1; tankyrase, 100.0 4.7E-30 1.6E-34 270.5 8.4 223 7-251 19-287 (351)
35 3d9h_A CDNA FLJ77766, highly s 100.0 4.1E-29 1.4E-33 261.0 14.8 190 2-233 82-275 (285)
36 2fo1_E LIN-12 protein; beta-ba 100.0 1.4E-29 4.7E-34 274.7 11.5 201 2-236 156-371 (373)
37 2rfa_A Transient receptor pote 100.0 1.5E-28 5E-33 246.3 17.7 182 2-206 27-221 (232)
38 3eu9_A Huntingtin-interacting 100.0 4.1E-29 1.4E-33 249.1 13.0 211 4-251 1-217 (240)
39 2dzn_A Probable 26S proteasome 100.0 4.3E-28 1.5E-32 241.5 20.3 180 6-221 30-218 (228)
40 2pnn_A Transient receptor pote 100.0 1.1E-29 3.6E-34 261.9 5.2 209 2-240 3-263 (273)
41 3eu9_A Huntingtin-interacting 100.0 1.6E-28 5.6E-33 244.8 12.8 199 2-237 32-236 (240)
42 2etb_A Transient receptor pote 100.0 1.9E-29 6.5E-34 257.2 5.0 199 11-239 1-249 (256)
43 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-27 3.8E-32 241.2 17.5 182 2-221 35-229 (236)
44 1sw6_A Regulatory protein SWI6 99.9 3.8E-28 1.3E-32 259.0 13.7 176 2-222 120-327 (327)
45 3hra_A Ankyrin repeat family p 99.9 3E-27 1E-31 231.2 17.7 166 3-205 30-201 (201)
46 2rfm_A Putative ankyrin repeat 99.9 8E-28 2.7E-32 235.0 12.5 162 5-204 28-189 (192)
47 1s70_B 130 kDa myosin-binding 99.9 1E-27 3.5E-32 248.9 13.6 181 2-220 63-274 (299)
48 2vge_A RELA-associated inhibit 99.9 4E-28 1.4E-32 246.6 9.2 185 7-229 16-206 (229)
49 1ihb_A P18-INK4C(INK6), cyclin 99.9 5.2E-27 1.8E-31 222.0 14.5 159 10-206 3-161 (162)
50 2f8y_A Notch homolog 1, transl 99.9 1.5E-26 5E-31 230.0 18.4 169 2-207 48-216 (223)
51 3twr_A Tankyrase-2; ankyrin re 99.9 6.8E-27 2.3E-31 222.6 15.3 161 7-205 3-163 (165)
52 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.4E-26 4.7E-31 222.2 17.4 159 9-205 11-169 (169)
53 2etb_A Transient receptor pote 99.9 3.2E-27 1.1E-31 240.7 13.7 185 2-206 29-245 (256)
54 4gpm_A Engineered protein OR26 99.9 9.2E-27 3.2E-31 226.5 16.1 132 1-151 26-157 (169)
55 3jxi_A Vanilloid receptor-rela 99.9 2.2E-28 7.6E-33 249.5 4.5 200 9-238 2-252 (260)
56 3v31_A Ankyrin repeat family A 99.9 8.4E-27 2.9E-31 222.4 14.6 157 11-205 2-158 (167)
57 3v30_A DNA-binding protein rfx 99.9 1.1E-26 3.6E-31 222.7 14.8 157 12-205 2-158 (172)
58 2pnn_A Transient receptor pote 99.9 4.8E-27 1.7E-31 242.0 12.7 184 7-210 49-261 (273)
59 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.6E-26 5.6E-31 217.5 14.5 153 12-203 2-154 (156)
60 1awc_B Protein (GA binding pro 99.9 2.6E-26 9E-31 216.4 15.6 152 11-201 1-152 (153)
61 3jxi_A Vanilloid receptor-rela 99.9 1E-26 3.5E-31 237.2 13.3 187 2-208 32-251 (260)
62 3f6q_A Integrin-linked protein 99.9 2.4E-26 8.3E-31 222.3 14.7 161 9-206 2-162 (179)
63 1sw6_A Regulatory protein SWI6 99.9 3.8E-28 1.3E-32 259.0 0.6 221 2-251 42-323 (327)
64 3kea_A K1L; tropism, ANK repea 99.9 5.9E-27 2E-31 244.8 9.5 195 2-240 54-250 (285)
65 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2E-26 6.8E-31 234.2 10.6 175 10-223 3-193 (239)
66 4hbd_A KN motif and ankyrin re 99.9 6.3E-26 2.2E-30 236.1 14.1 163 5-204 104-272 (276)
67 1d9s_A Cyclin-dependent kinase 99.9 1.8E-25 6.1E-30 207.1 12.1 132 2-153 2-134 (136)
68 4hbd_A KN motif and ankyrin re 99.9 4.2E-26 1.4E-30 237.5 1.9 184 12-233 76-272 (276)
69 2y1l_E Darpin-8.4; hydrolase-i 99.9 5.7E-24 1.9E-28 203.9 16.1 131 2-151 37-167 (169)
70 3v31_A Ankyrin repeat family A 99.9 1E-23 3.6E-28 200.9 16.7 135 2-155 26-160 (167)
71 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.3E-24 1.1E-28 217.8 13.9 163 2-194 28-193 (239)
72 3t8k_A Uncharacterized protein 99.9 6E-25 2E-29 216.9 7.9 162 12-205 6-177 (186)
73 1bi7_B P16INK4A, MTS1, multipl 99.9 1.5E-24 5.1E-29 205.6 10.1 147 4-189 4-151 (156)
74 2vge_A RELA-associated inhibit 99.9 3.1E-24 1.1E-28 217.9 13.0 186 28-251 1-195 (229)
75 3v30_A DNA-binding protein rfx 99.9 1.1E-23 3.9E-28 201.5 15.6 132 5-155 29-160 (172)
76 2jab_A H10-2-G3; HER2, darpin, 99.9 7.8E-24 2.7E-28 196.0 13.7 125 8-151 10-134 (136)
77 1awc_B Protein (GA binding pro 99.9 2.4E-23 8.3E-28 196.0 16.4 128 2-149 25-152 (153)
78 2rfm_A Putative ankyrin repeat 99.9 1.6E-23 5.6E-28 204.3 15.5 132 2-152 58-189 (192)
79 3c5r_A BARD-1, BRCA1-associate 99.9 2.2E-24 7.7E-29 199.4 8.4 125 2-146 1-125 (137)
80 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.5E-23 5.2E-28 198.1 14.3 130 2-151 28-158 (162)
81 3f6q_A Integrin-linked protein 99.9 3.4E-24 1.2E-28 207.1 9.5 165 57-244 3-171 (179)
82 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.1E-23 7.1E-28 196.3 13.3 129 2-151 26-154 (156)
83 3twr_A Tankyrase-2; ankyrin re 99.9 3.7E-23 1.3E-27 196.6 14.2 130 2-151 32-161 (165)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.4E-23 2.2E-27 184.4 14.6 123 11-152 1-123 (126)
85 3deo_A Signal recognition part 99.9 2.9E-23 9.9E-28 202.1 8.7 140 9-203 41-180 (183)
86 2b0o_E UPLC1; arfgap, structur 99.9 3E-22 1E-26 212.0 16.8 148 10-195 149-299 (301)
87 3ui2_A Signal recognition part 99.9 3.5E-23 1.2E-27 211.6 9.3 141 9-204 42-182 (244)
88 3aaa_C Myotrophin, protein V-1 99.9 1.1E-22 3.8E-27 184.7 11.4 112 9-139 4-115 (123)
89 1d9s_A Cyclin-dependent kinase 99.9 5.9E-23 2E-27 190.1 8.4 125 56-205 9-134 (136)
90 3t8k_A Uncharacterized protein 99.9 4.9E-23 1.7E-27 203.2 7.7 138 4-157 29-181 (186)
91 1bi7_B P16INK4A, MTS1, multipl 99.9 2E-22 6.7E-27 190.9 9.2 137 56-217 9-150 (156)
92 3ehr_A Osteoclast-stimulating 99.9 1.5E-22 5E-27 202.4 6.6 126 8-151 69-194 (222)
93 2jab_A H10-2-G3; HER2, darpin, 99.9 8E-22 2.7E-26 182.5 10.8 125 56-204 11-135 (136)
94 2aja_A Ankyrin repeat family p 99.9 1.6E-23 5.5E-28 229.1 -1.2 177 9-228 89-271 (376)
95 3c5r_A BARD-1, BRCA1-associate 99.9 1.5E-21 5.2E-26 180.3 11.2 124 56-203 7-130 (137)
96 1n0r_A 4ANK, 4 ankyrin repeats 99.8 3.3E-21 1.1E-25 173.2 12.1 124 58-205 1-124 (126)
97 3jue_A Arfgap with coiled-coil 99.8 1.1E-20 3.7E-25 206.1 14.5 154 7-193 194-348 (368)
98 3aaa_C Myotrophin, protein V-1 99.8 6.7E-21 2.3E-25 172.9 9.8 117 56-196 4-120 (123)
99 1dcq_A PYK2-associated protein 99.8 4.1E-20 1.4E-24 193.4 15.4 130 11-153 129-261 (278)
100 3lvq_E ARF-GAP with SH3 domain 99.8 3.1E-20 1.1E-24 209.4 15.2 128 11-151 131-261 (497)
101 3deo_A Signal recognition part 99.8 1.8E-21 6.2E-26 189.3 3.6 171 19-230 7-178 (183)
102 3ehr_A Osteoclast-stimulating 99.8 1.1E-20 3.6E-25 188.8 8.5 127 56-206 70-197 (222)
103 3ui2_A Signal recognition part 99.8 1.5E-21 5E-26 199.5 1.8 143 56-236 42-185 (244)
104 2aja_A Ankyrin repeat family p 99.8 1.3E-21 4.5E-26 213.9 1.3 199 7-229 123-367 (376)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1E-19 3.5E-24 157.4 11.8 87 59-150 2-88 (93)
106 2l6b_A NR1C; ankyrin, consensu 99.8 2.7E-20 9.1E-25 166.7 7.4 110 6-134 3-112 (115)
107 2b0o_E UPLC1; arfgap, structur 99.8 5.5E-20 1.9E-24 194.7 10.8 142 58-224 150-299 (301)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.1E-19 7.1E-24 155.4 11.7 74 44-122 20-93 (93)
109 1dcq_A PYK2-associated protein 99.8 7.4E-19 2.5E-23 183.8 14.0 188 8-222 62-274 (278)
110 2l6b_A NR1C; ankyrin, consensu 99.7 1.9E-18 6.6E-23 154.5 8.6 95 55-158 5-99 (115)
111 3lvq_E ARF-GAP with SH3 domain 99.7 3.7E-18 1.3E-22 192.4 12.9 137 59-220 132-276 (497)
112 3jue_A Arfgap with coiled-coil 99.7 2.1E-18 7.1E-23 188.1 9.7 124 58-205 198-324 (368)
113 2zgd_A 3 repeat synthetic anky 99.7 1.5E-17 5E-22 148.8 10.1 92 53-149 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.6E-16 5.4E-21 142.0 10.4 93 5-116 17-109 (110)
115 1m9o_A Tristetraproline; Cys3H 98.6 1.4E-08 4.7E-13 85.8 2.4 61 281-342 8-76 (77)
116 3d2q_A Muscleblind-like protei 98.3 6.5E-08 2.2E-12 80.4 -0.8 60 286-345 7-69 (70)
117 2e5s_A Otthump00000018578; ZF- 97.6 4.2E-06 1.4E-10 74.0 -2.0 61 285-345 20-83 (98)
118 2cqe_A KIAA1064 protein; CCCH 97.5 4.8E-05 1.6E-09 67.2 3.5 49 282-342 10-62 (98)
119 2d9n_A Cleavage and polyadenyl 97.3 9.4E-05 3.2E-09 62.4 2.2 57 281-344 6-65 (77)
120 2rhk_C Cleavage and polyadenyl 96.9 0.00018 6.3E-09 59.8 0.6 56 282-344 13-71 (72)
121 2d9m_A Zinc finger CCCH-type d 96.6 0.0002 6.9E-09 58.6 -1.1 27 319-345 19-48 (69)
122 2d9m_A Zinc finger CCCH-type d 96.5 0.00015 5.2E-09 59.3 -2.5 40 286-325 21-63 (69)
123 3d2n_A Muscleblind-like protei 96.4 0.00061 2.1E-08 58.3 0.7 65 285-351 9-76 (83)
124 1m9o_A Tristetraproline; Cys3H 96.1 0.0024 8.3E-08 53.3 2.6 54 256-310 22-76 (77)
125 2rpp_A Muscleblind-like protei 95.6 0.0014 4.7E-08 56.8 -1.0 60 286-347 18-80 (89)
126 2cqe_A KIAA1064 protein; CCCH 90.0 0.13 4.4E-06 45.1 2.3 33 261-308 27-60 (98)
127 2d9n_A Cleavage and polyadenyl 87.9 0.26 9E-06 41.1 2.6 53 256-326 19-72 (77)
128 3d2q_A Muscleblind-like protei 85.1 0.27 9.4E-06 40.2 1.3 45 263-311 23-67 (70)
129 2lhn_A Nuclear polyadenylated 83.6 0.24 8.1E-06 41.8 0.0 41 286-340 32-72 (80)
130 2lhn_A Nuclear polyadenylated 80.4 0.39 1.3E-05 40.5 0.0 41 286-339 10-50 (80)
131 2e5s_A Otthump00000018578; ZF- 74.1 0.57 1.9E-05 41.0 -0.4 45 263-311 37-81 (98)
132 2rpp_A Muscleblind-like protei 71.5 0.47 1.6E-05 40.8 -1.5 52 263-327 34-85 (89)
133 2rhk_C Cleavage and polyadenyl 63.1 1.9 6.6E-05 35.4 0.6 43 256-309 25-68 (72)
134 3d2n_A Muscleblind-like protei 58.8 2.5 8.7E-05 35.7 0.6 40 263-308 26-65 (83)
135 2fc6_A Nuclear, target of EGR1 56.5 3.4 0.00012 31.4 0.9 24 318-341 18-45 (50)
136 3u1l_A PRE-mRNA-splicing facto 51.9 2.2 7.6E-05 43.2 -1.0 22 286-307 71-92 (240)
137 4g26_A Pentatricopeptide repea 22.0 1.2E+02 0.004 33.5 6.5 122 16-159 33-172 (501)
138 4g26_A Pentatricopeptide repea 21.0 1.5E+02 0.0053 32.5 7.2 92 61-158 110-206 (501)
No 1
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.98 E-value=9.4e-33 Score=283.17 Aligned_cols=209 Identities=16% Similarity=0.121 Sum_probs=179.0
Q ss_pred CCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCC---ccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 5 STAETEDSFTSMLELASNNDVEGFKRMLERDPSS---VDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 5 in~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gad---Vn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
++..|.+|.||||+||..|++++|++||+ .+++ ++.. +..|+||||+||..|+.++|++||++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~ 67 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQ-------------NDLGQTALHLAAILGEASTVEKLYAA 67 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 56789999999999999999999999999 5665 5554 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC---------------------------------------
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD--------------------------------------- 122 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd--------------------------------------- 122 (710)
|++++.. +..|+||||+|+..|+ .+++++|+++|++
T Consensus 68 -ga~~~~~-~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (282)
T 1oy3_D 68 -GAGVLVA-ERGGHTALHLACRVRA---HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142 (282)
T ss_dssp -TCCSSCC-CTTSCCHHHHHTTTTC---HHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhh
Confidence 9999999 9999999999999999 9999999998865
Q ss_pred --------CCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCC-CCCChhchhHhhC
Q 005175 123 --------PDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNS-DYSSPLLTASASG 193 (710)
Q Consensus 123 --------~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~-~G~TPLH~Aa~~G 193 (710)
++.+|..|.||||+|+..|+.++++.|++. |+ +++..+. .|.||||+|+..|
T Consensus 143 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~---------------~~~~~~~~~g~tpL~~A~~~~ 203 (282)
T 1oy3_D 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA----GA---------------DLNKPEPTCGRTPLHLAVEAQ 203 (282)
T ss_dssp -CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----TC---------------CTTCCCTTTCCCHHHHHHHTT
T ss_pred hhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc----CC---------------CCCCCCCCCCcCHHHHHHHcC
Confidence 778899999999999999999988888774 32 4455554 4999999999999
Q ss_pred CCchhhhc----cCCCccccCCCCccccccccCCCCCCCCCCcccccccccccccccccccc
Q 005175 194 SPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 194 ~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~De~g~~~f~v~ 251 (710)
+.+++++| ++++.++..|.||||+|+..++..+++.|++.|++++..|..|.+++...
T Consensus 204 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a 265 (282)
T 1oy3_D 204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSS 265 (282)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------
T ss_pred CHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCccccccccc
Confidence 99995554 57778999999999999999999999999999999999999999988766
No 2
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=8.1e-32 Score=270.46 Aligned_cols=211 Identities=20% Similarity=0.253 Sum_probs=194.4
Q ss_pred CCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 005175 3 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 82 (710)
Q Consensus 3 anin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 82 (710)
.|++.+|.+|.||||+||..|++++|++|++ .|++++.. +..|.||||+|+..|+.++|++|+++
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~- 66 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTC-------------SEDQRTPLMEAAENNHLEAVKYLIKA- 66 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHH-cCCCcCcc-------------CCCCCCHHHHHHHhCCHHHHHHHHhC-
Confidence 5788999999999999999999999999999 78898876 57899999999999999999999999
Q ss_pred CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCch
Q 005175 83 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG-ADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 161 (710)
Q Consensus 83 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G-Ad~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 161 (710)
|++++.. +..|.||||+|+..|+ .+++++|+++| ++++..|..|.||||+|+..|+.++++.|++ .|+
T Consensus 67 g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~--- 135 (237)
T 3b7b_A 67 GALVDPK-DAEGSTCLHLAAKKGH---YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS----KGS--- 135 (237)
T ss_dssp TCCCCCC-CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC---
T ss_pred CCCCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH----CCC---
Confidence 9999999 9999999999999999 99999999998 8999999999999999999999888877766 343
Q ss_pred hhhccccccccccccCCCCCCCChhchhHhhCCCchhhhcc----CCCccccCCCCccccccccCCCCCCCCCCcccccc
Q 005175 162 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSI 237 (710)
Q Consensus 162 ~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~----d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i 237 (710)
+++..|..|.||||+|+..|+.+++++++ +.+..+..|.||||+|+..++.+++..|++.|+++
T Consensus 136 ------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 203 (237)
T 3b7b_A 136 ------------DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203 (237)
T ss_dssp ------------CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred ------------CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence 45677889999999999999999966655 56678888999999999999999999999999999
Q ss_pred cccccccccccccc
Q 005175 238 YATDEFRMFSFKIR 251 (710)
Q Consensus 238 ~~~De~g~~~f~v~ 251 (710)
...|+.|.++++++
T Consensus 204 ~~~d~~g~t~l~~A 217 (237)
T 3b7b_A 204 TLKNKEGETPLQCA 217 (237)
T ss_dssp TCCCTTSCCHHHHS
T ss_pred CccCCCCCCHHHHH
Confidence 99999999999887
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=8e-33 Score=282.86 Aligned_cols=212 Identities=20% Similarity=0.200 Sum_probs=159.4
Q ss_pred CCCCCCCCCChhHHHHHHHcC-------------CHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc
Q 005175 3 NNSTAETEDSFTSMLELASNN-------------DVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY 69 (710)
Q Consensus 3 anin~~d~dG~TpLh~AA~~G-------------dle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~ 69 (710)
.|+|.+|.+|+||||+|+..| +.++|++||+ .|.+++... |..|+||||+||..
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~------------d~~g~t~L~~A~~~ 67 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY-QGASLHNQT------------DRTGETALHLAARY 67 (253)
T ss_dssp ----------------------------------------------------CC------------CTTSCCHHHHHHHT
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH-ccCCccccc------------CCCCCcHHHHHHHc
Confidence 478999999999999999987 9999999999 777776532 68999999999999
Q ss_pred CCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCC-CCCCCCCCCCcHHHHHhcCCCHHHHHH
Q 005175 70 GSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA-DPDCVDANGHHPIDVIVLPPKLDSMRA 148 (710)
Q Consensus 70 G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GA-d~n~~D~~G~TPLhlAa~~G~~eivk~ 148 (710)
|+.++|++||++ |++++.. +..|+||||+|+..|+ .+++++|+++|+ +++..|..|.||||+|+..|+.++++.
T Consensus 68 g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 142 (253)
T 1yyh_A 68 SRSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADA---QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 142 (253)
T ss_dssp TCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHH
T ss_pred CCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHH
Confidence 999999999999 9999999 9999999999999999 999999999987 999999999999999999999888877
Q ss_pred HHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCCCccccccccCCC
Q 005175 149 ILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREY 224 (710)
Q Consensus 149 LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~ 224 (710)
|++ .|+ +++..|..|.||||+|+..|+.+++++| ++.+..+..|.||||+|+..++.
T Consensus 143 Ll~----~g~---------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~ 203 (253)
T 1yyh_A 143 LIN----SHA---------------DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 203 (253)
T ss_dssp HHH----TTC---------------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHH----cCC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCH
Confidence 766 343 5667789999999999999999995555 57778899999999999999999
Q ss_pred CCCCCCCcccccccccccccccccccc
Q 005175 225 PIDPSLPDIKNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 225 ~i~~~L~d~ga~i~~~De~g~~~f~v~ 251 (710)
++++.|++.|++++..|..+.++++++
T Consensus 204 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A 230 (253)
T 1yyh_A 204 ETAKVLLDHFANRDITDHMDRLPRDIA 230 (253)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHcCCCccccccCCCCHHHHH
Confidence 999999999999999999999998887
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=2.5e-31 Score=280.28 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=70.7
Q ss_pred cccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCCCccccccccCCCCCCCCCCcccccccccccccccccc
Q 005175 174 SIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFK 249 (710)
Q Consensus 174 ~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~De~g~~~f~ 249 (710)
+++..|..|.||||+|+..|+.+++++| ++++..+..|.||||+|+..++.++++.|++.|+++...|..|.++++
T Consensus 239 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~ 318 (351)
T 3utm_A 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ 318 (351)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence 6778899999999999999999996655 577788999999999999999999999999999999999999998887
Q ss_pred cc
Q 005175 250 IR 251 (710)
Q Consensus 250 v~ 251 (710)
++
T Consensus 319 ~a 320 (351)
T 3utm_A 319 MG 320 (351)
T ss_dssp HS
T ss_pred hh
Confidence 75
No 5
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=1.8e-31 Score=267.75 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=186.0
Q ss_pred CCCCCCCChhHHHHHHHcCCHHHHHHHHh---cCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 5 STAETEDSFTSMLELASNNDVEGFKRMLE---RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 5 in~~d~dG~TpLh~AA~~Gdle~Vk~LLe---~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
++..|.+|.||||+||..|++++|++|++ ..+.+++.. +..|+||||+|+..|+.++|++||++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-------------NNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-------------cccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 45689999999999999999999999997 378888876 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCC----CCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCC
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA----DPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK 157 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GA----d~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g 157 (710)
|++++.. +..|.||||+|+..|+ .+++++|+++++ +++..|..|.||||+|+..|+.++++.|++ .+
T Consensus 69 -g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g 139 (241)
T 1k1a_A 69 -GASPMAL-DRHGQTAAHLACEHRS---PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE----RG 139 (241)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TT
T ss_pred -CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH----cC
Confidence 9999999 9999999999999999 999999999988 899999999999999999999888877766 34
Q ss_pred CCchhhhccccccccccccCCC-CCCCChhchhHhhCCCchhhhc----cCCCccccCCCCccccccccCCCCCCCCCCc
Q 005175 158 NSSVVVASGAEHNLTVSIGSSN-SDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPD 232 (710)
Q Consensus 158 a~~~~~aa~~~~~l~~~in~~d-~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d 232 (710)
+ +++..+ ..|.||||+|+..|+.++++.+ ++.+..+..|.||||+|+..++.++++.|++
T Consensus 140 ~---------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 140 A---------------DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp C---------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred C---------------CcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 2 344556 7899999999999999996555 5677888999999999999999999999999
Q ss_pred ccccccccccccccccccc
Q 005175 233 IKNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 233 ~ga~i~~~De~g~~~f~v~ 251 (710)
.|++++..|..+.++++++
T Consensus 205 ~ga~~~~~~~~g~tpl~~A 223 (241)
T 1k1a_A 205 SGADSSLKNCHNDTPLMVA 223 (241)
T ss_dssp TTCCTTCCCTTSCCTTTTC
T ss_pred cCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999887
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=272.18 Aligned_cols=202 Identities=21% Similarity=0.262 Sum_probs=182.1
Q ss_pred CChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 005175 11 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC 90 (710)
Q Consensus 11 dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~ 90 (710)
+|+||||+||..|++++|++||+ .|+++|.. |.+|.||||+||..|+.++|++||++ |+++|..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~- 65 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS-QGWAVNII-------------TADHVSPLHEACLGGHLSCVKILLKH-GAQVNGV- 65 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-
Confidence 58999999999999999999999 78999887 58999999999999999999999999 9999999
Q ss_pred CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcccccc
Q 005175 91 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHN 170 (710)
Q Consensus 91 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~ 170 (710)
+..|.||||+|+..|+ .++|++|+++|++++. +.+|.||||+|+..|+.++++.|++ .|+
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~------------ 125 (261)
T 2xai_A 66 TADWHTPLFNACVSGS---WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIA----YGG------------ 125 (261)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHH----TTC------------
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHH----cCC------------
Confidence 9999999999999999 9999999999999986 4569999999999999888877766 343
Q ss_pred ccccccCCCCCCCChhchhHhhCCCchhhhcc----CCCccccCCCCccccccccCCCCCCCCCCccccccccccccccc
Q 005175 171 LTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMF 246 (710)
Q Consensus 171 l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~----d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~De~g~~ 246 (710)
+++..|..|.||||+|+..|+.++++.++ +.+ .+..|.||||+|+..++.++++.|++.|++++..|..|.+
T Consensus 126 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t 201 (261)
T 2xai_A 126 ---NIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKR 201 (261)
T ss_dssp ---CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT-CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ---CCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 56677899999999999999999966654 555 3778999999999999999999999999999999999999
Q ss_pred cccccc
Q 005175 247 SFKIRP 252 (710)
Q Consensus 247 ~f~v~p 252 (710)
+++++.
T Consensus 202 pl~~A~ 207 (261)
T 2xai_A 202 PVELVP 207 (261)
T ss_dssp GGGGSC
T ss_pred hhhhcc
Confidence 999883
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=8.1e-31 Score=273.88 Aligned_cols=210 Identities=20% Similarity=0.239 Sum_probs=189.8
Q ss_pred CCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 005175 4 NSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS 83 (710)
Q Consensus 4 nin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G 83 (710)
.++..|.+|+||||+||..|++++|++||+ .|++++.. |.+|+||||+||..|+.++|++||++ |
T Consensus 51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g 115 (285)
T 3d9h_A 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNII-------------TADHVSPLHEACLGGHLSCVKILLKH-G 115 (285)
T ss_dssp TTCSSSCCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEE-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred cccCCCccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHCCcHHHHHHHHHC-C
Confidence 456789999999999999999999999999 78898877 58999999999999999999999999 9
Q ss_pred CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhh
Q 005175 84 ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVV 163 (710)
Q Consensus 84 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~ 163 (710)
++++.. +..|.||||+|+..|+ .++|++|+++|++++..+ +|.||||+|+..|+.++++.|++ .++
T Consensus 116 a~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~----~g~----- 181 (285)
T 3d9h_A 116 AQVNGV-TADWHTPLFNACVSGS---WDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIA----YGG----- 181 (285)
T ss_dssp CCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHH----TTC-----
T ss_pred CCCCCC-CCCCCCHHHHHHHcCH---HHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHH----CCC-----
Confidence 999999 9999999999999999 999999999999998755 59999999999999888877766 332
Q ss_pred hccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCc---cccCCCCccccccccCCCCCCCCCCccccccccc
Q 005175 164 ASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM---ALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYAT 240 (710)
Q Consensus 164 aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~---~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~ 240 (710)
+++..|..|.||||+|+..|+.++++.|++.++ .+..|.||||+|+..++.++++.|++.|++++..
T Consensus 182 ----------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~ 251 (285)
T 3d9h_A 182 ----------NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251 (285)
T ss_dssp ----------CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred ----------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 566778999999999999999999777654432 3678999999999999999999999999999999
Q ss_pred cccccccccccc
Q 005175 241 DEFRMFSFKIRP 252 (710)
Q Consensus 241 De~g~~~f~v~p 252 (710)
|..|.++++++.
T Consensus 252 d~~g~t~l~~A~ 263 (285)
T 3d9h_A 252 NAEGKRPVELVP 263 (285)
T ss_dssp CTTSCCGGGGSC
T ss_pred CCCCCCHHHHhc
Confidence 999999999883
No 8
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=8.6e-31 Score=278.24 Aligned_cols=220 Identities=20% Similarity=0.195 Sum_probs=180.9
Q ss_pred CCCCCCCCC-CChhHHHHHHHcCCHHHHHHHHhcCCCCccccc--------------------cccccccCCcccCCCCC
Q 005175 2 NNNSTAETE-DSFTSMLELASNNDVEGFKRMLERDPSSVDEVG--------------------LWYGRVNGSKQMVSEHR 60 (710)
Q Consensus 2 Ganin~~d~-dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~--------------------L~~a~~~g~~~~d~~G~ 60 (710)
|+|+|..+. .|+||||+||..|+.++|++||+ .|++++..+ +...........|..|+
T Consensus 48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 126 (337)
T 4g8k_A 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGF 126 (337)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCC
T ss_pred CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCC
Confidence 789998876 49999999999999999999999 888887654 11223344566788999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCccccc---------CCCCCcHHHHHHhCCCCCHHHHHHHHHH-CCCCCCCCCCCC
Q 005175 61 TPLMVAATYGSVDVLKLILLHSSADVNVSC---------GSDRTTALHCAASGGSANVVDVVRLLLS-AGADPDCVDANG 130 (710)
Q Consensus 61 TPLH~AA~~G~~evVklLLe~~GADVN~~~---------d~~G~TPLH~Aa~~G~~~~~eiVklLLe-~GAd~n~~D~~G 130 (710)
||||+|+..|+.+++++|+++ |++++... +..|.||||+|+..|+ .++|++||+ .|++++.+|..|
T Consensus 127 t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~---~~~v~~LL~~~gad~n~~d~~g 202 (337)
T 4g8k_A 127 TAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMG 202 (337)
T ss_dssp BHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTC---HHHHHHHHHHSCCCTTCCCTTS
T ss_pred CHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCC---HHHHHHHHhccCCCcCccCCCC
Confidence 999999999999999999999 99988641 4568999999999999 999999996 599999999999
Q ss_pred CcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhc-----cCCC
Q 005175 131 HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL-----VSSP 205 (710)
Q Consensus 131 ~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l-----~d~n 205 (710)
.|+||.++..+....++.++++|++.|+ +++.+|..|.||||+|+..|+.++++.| ++++
T Consensus 203 ~t~l~~~~~~~~~~~~~~i~~lLl~~ga---------------d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn 267 (337)
T 4g8k_A 203 RNALIHALLSSDDSDVEAITHLLLDHGA---------------DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 267 (337)
T ss_dssp CCHHHHHHHHSCTTTHHHHHHHHHHTTC---------------CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT
T ss_pred CcHHHHHHHHcCcccHHHHHHHHHHCCC---------------CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc
Confidence 9999998876666556677777888876 4566778888888888888888876654 3556
Q ss_pred ccccCCCCccccccccCCCCCCCCCCcccccccccc
Q 005175 206 MALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATD 241 (710)
Q Consensus 206 ~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D 241 (710)
.++..|.||||+|+..|+.++++.|++.|++++..|
T Consensus 268 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 268 DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303 (337)
T ss_dssp CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 778888888888888888888888888888877654
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=266.07 Aligned_cols=208 Identities=19% Similarity=0.220 Sum_probs=177.8
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+||..|+.++|++||+ .|++++.. |.+|+||||+|+..|+.++|++||++
T Consensus 26 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 91 (261)
T 2xai_A 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-------------TADWHTPLFNACVSGSWDCVNLLLQH 91 (261)
T ss_dssp TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 78999999999999999999999999999999 78999887 58999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCch
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 161 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 161 (710)
|++++.. .+|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+..|+.++++.|++. |+
T Consensus 92 -g~~~~~~--~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~--- 158 (261)
T 2xai_A 92 -GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES----GA--- 158 (261)
T ss_dssp -TCCSSCS--CTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH----TC---
T ss_pred -CCCCCCC--CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc----CC---
Confidence 9999864 669999999999999 9999999999999999999999999999999999988888774 32
Q ss_pred hhhccccccccccccCCCCCCCChhchhHhhCCCchhh----hccCCCccccCCCCccccccccCCCCCCCCCCcccc--
Q 005175 162 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPS----RLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKN-- 235 (710)
Q Consensus 162 ~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile----~l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga-- 235 (710)
+++. +..|.||||+|+..|+.++++ .+++.+.++..|.||+|+|+..+ +++..|++.+.
T Consensus 159 ------------~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~ 223 (261)
T 2xai_A 159 ------------DVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPP 223 (261)
T ss_dssp ------------CTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCC
T ss_pred ------------CCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCc
Confidence 2332 778999999999999999854 45677889999999999999654 35666665544
Q ss_pred ------cccccccccccccccc
Q 005175 236 ------SIYATDEFRMFSFKIR 251 (710)
Q Consensus 236 ------~i~~~De~g~~~f~v~ 251 (710)
++...|.+|.+.++..
T Consensus 224 ~l~~~~~~~~r~~~g~t~l~~~ 245 (261)
T 2xai_A 224 SLMQLCRLRIRKCFGIQQHHKI 245 (261)
T ss_dssp CHHHHHHHHHHTTSCTTCGGGG
T ss_pred cHHHHHHHHHHHHhchhccccC
Confidence 3334556666555543
No 10
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=3.2e-30 Score=258.62 Aligned_cols=196 Identities=21% Similarity=0.176 Sum_probs=174.1
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+|+..|+.++|++|++ .|++++.. +..|.||||+|+..|+.+++++|++.
T Consensus 36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMAL-------------DRHGQTAAHLACEHRSPTCLRALLDS 101 (241)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 67899999999999999999999999999999 88888876 58999999999999999999999999
Q ss_pred CCC----CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHhcCCCHHHHHHHHHHHHhC
Q 005175 82 SSA----DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIVLPPKLDSMRAILEEVFGS 156 (710)
Q Consensus 82 ~GA----DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ 156 (710)
++ +++.. +..|.||||+|+..|+ .+++++|+++|++++..+ ..|.||||+|+..|+.++++.|++ .
T Consensus 102 -~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ 172 (241)
T 1k1a_A 102 -AAPGTLDLEAR-NYDGLTALHVAVNTEC---QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ----H 172 (241)
T ss_dssp -SCTTSCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH----T
T ss_pred -CCCcccccccc-CcCCCcHHHHHHHcCC---HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHH----c
Confidence 76 88988 9999999999999999 999999999999999999 899999999999999988887776 3
Q ss_pred CCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhh----ccCCCccccCCCCccccccccCCCCCCCCCCc
Q 005175 157 KNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPD 232 (710)
Q Consensus 157 ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~----l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d 232 (710)
|+ +++..|..|.||||+|+..|+.++++. +++.+.++..|.||||+|+..++.++++.|.+
T Consensus 173 g~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 173 GA---------------NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp TC---------------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred CC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 43 567778999999999999999999555 55777889999999999999999999888877
Q ss_pred ccc
Q 005175 233 IKN 235 (710)
Q Consensus 233 ~ga 235 (710)
.++
T Consensus 238 ~~a 240 (241)
T 1k1a_A 238 RPA 240 (241)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 11
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.6e-30 Score=257.05 Aligned_cols=198 Identities=19% Similarity=0.210 Sum_probs=177.9
Q ss_pred CCCCCCC-CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005175 2 NNNSTAE-TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 80 (710)
Q Consensus 2 Ganin~~-d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 80 (710)
|++++.. |.+|.||||+||..|++++|++||+ .|++++.. +..|+||||+|+..|+.+++++||+
T Consensus 14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQ-------------DNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcccccCCCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 5677655 8899999999999999999999999 78888876 5899999999999999999999999
Q ss_pred cCCC-CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 005175 81 HSSA-DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNS 159 (710)
Q Consensus 81 ~~GA-DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~ 159 (710)
+ ++ +++.. +..|.||||+|+..|+ .+++++|+++|++++..|..|+||||+|+..|+.++++.|++ .|+
T Consensus 80 ~-~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~- 149 (223)
T 2f8y_A 80 N-RATDLDAR-MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----NGA- 149 (223)
T ss_dssp B-TTSCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH----TTC-
T ss_pred c-CCCCcccC-CCCCCcHHHHHHHhCc---HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH----cCC-
Confidence 9 55 89988 9999999999999999 999999999999999999999999999999999888887766 343
Q ss_pred chhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCCCccccccccCCCCCCCCCCcccc
Q 005175 160 SVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKN 235 (710)
Q Consensus 160 ~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga 235 (710)
+++..|..|.||||+|+..|+.++++.| ++.+..+..|.||+++|+..++.++++.|++.|.
T Consensus 150 --------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 150 --------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp --------------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred --------------CCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 5667789999999999999999996555 5667888999999999999999999998888776
Q ss_pred cc
Q 005175 236 SI 237 (710)
Q Consensus 236 ~i 237 (710)
..
T Consensus 216 ~~ 217 (223)
T 2f8y_A 216 VR 217 (223)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 12
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=5.4e-31 Score=273.67 Aligned_cols=221 Identities=19% Similarity=0.186 Sum_probs=187.6
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 88 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 88 (710)
+.+|.|+||.||..|++++|++||+ .|+++|.. +..|.||||+||..|+.++|++||++ |+++|.
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~ 101 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLE-RGADINYA-------------NVDGLTALHQACIDDNVDMVKFLVEN-GANINQ 101 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCC
Confidence 4567899999999999999999999 78899887 58899999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcccc
Q 005175 89 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 168 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~ 168 (710)
. +..|+||||+|+..|+ .++|++|+++|++++..|..|.||||+|+..++.++++.++.. .+.+.........
T Consensus 102 ~-~~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~---~~~~~~~~~~~~~ 174 (299)
T 1s70_B 102 P-DNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR---QGVDIEAARKEEE 174 (299)
T ss_dssp C-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH---HTCCHHHHHHHHH
T ss_pred C-CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhh---cCCCchhhhhhhh
Confidence 9 9999999999999999 9999999999999999999999999999998888887766652 1211110000000
Q ss_pred c-----------cccccccCCCCCCCChhchhHhhCCCchhhhcc----CCCccccCCCCccccccccCCCCCCCCCCcc
Q 005175 169 H-----------NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDI 233 (710)
Q Consensus 169 ~-----------~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~----d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ 233 (710)
. .........+..|.||||+|+..|+.++++.|+ +++..+..|.||||+|+..++.++++.|++.
T Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 254 (299)
T 1s70_B 175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254 (299)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc
Confidence 0 000123345678999999999999999966654 6678889999999999999999999999999
Q ss_pred cccccccccccccccccc
Q 005175 234 KNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 234 ga~i~~~De~g~~~f~v~ 251 (710)
|++++..|..|.++++++
T Consensus 255 gad~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 255 LCDMEAVNKVGQTAFDVA 272 (299)
T ss_dssp TCCTTCCCTTSCCTTTSC
T ss_pred CCCCCCcCCCCCCHHHHH
Confidence 999999999999999887
No 13
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=2.5e-30 Score=264.19 Aligned_cols=213 Identities=19% Similarity=0.173 Sum_probs=139.7
Q ss_pred CCCCCCC-CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005175 2 NNNSTAE-TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 80 (710)
Q Consensus 2 Ganin~~-d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 80 (710)
|++++.. +..|.||||+|+..|+.++|++||+ .|++++.. +..|.||||+|+..|+.+++++|++
T Consensus 28 g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 93 (285)
T 1wdy_A 28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLR-------------KKNGATPFLLAAIAGSVKLLKLFLS 93 (285)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4555555 5666777777777777777777776 56666654 4567777777777777777777777
Q ss_pred cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCC----------CCCCCcHHHHHhcCCCHHHHHHHH
Q 005175 81 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCV----------DANGHHPIDVIVLPPKLDSMRAIL 150 (710)
Q Consensus 81 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~----------D~~G~TPLhlAa~~G~~eivk~LL 150 (710)
+ |++++.. +..|.||||+|+..|+ .+++++|+++|++++.. +..|.||||+|+..|+.++++.|+
T Consensus 94 ~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 168 (285)
T 1wdy_A 94 K-GADVNEC-DFYGFTAFMEAAVYGK---VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168 (285)
T ss_dssp T-TCCTTCB-CTTCCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHH
T ss_pred c-CCCCCcc-CcccCCHHHHHHHhCC---HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHH
Confidence 6 7777766 6677777777777777 77777777777777665 566777777777777766666555
Q ss_pred HHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCC----Cch----hhhccCCCccccCCCCccccccccC
Q 005175 151 EEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS----PPS----PSRLVSSPMALKFNDVSFGTGAEKR 222 (710)
Q Consensus 151 e~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~----~ei----le~l~d~n~~~~~g~TpLh~Aa~~g 222 (710)
+. .+ .+++..|..|.||||+|+..++ .++ ++.+++.+..+..|.||||+|+..+
T Consensus 169 ~~---~~---------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 169 DE---MG---------------ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HT---SC---------------CCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred Hh---cC---------------CCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 42 12 2445556666677777766666 333 3334455566666667777776666
Q ss_pred CCCCCCCCCc-ccccccccccccccccccc
Q 005175 223 EYPIDPSLPD-IKNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 223 ~~~i~~~L~d-~ga~i~~~De~g~~~f~v~ 251 (710)
+.++++.|++ .+.+++..|..+.++++++
T Consensus 231 ~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A 260 (285)
T 1wdy_A 231 HLGLVQRLLEQEHIEINDTDSDGKTALLLA 260 (285)
T ss_dssp CHHHHHHHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred CHHHHHHHHhccCCCccccCCCCCcHHHHH
Confidence 6666666666 5666666666666666654
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=1.4e-30 Score=260.37 Aligned_cols=206 Identities=19% Similarity=0.225 Sum_probs=183.7
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 88 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 88 (710)
+..+.|+||.||..|+++.|+.||+..+..++.. +..|.||||+|+..|+.++|++||++ |++++.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~ 68 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRT-------------DQDSRTALHWACSAGHTEIVEFLLQL-GVPVND 68 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCC
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-------------CCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCC
Confidence 4467899999999999999999999666555554 58899999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcccc
Q 005175 89 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 168 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~ 168 (710)
. +..|+||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .++
T Consensus 69 ~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~---------- 130 (231)
T 3aji_A 69 K-DDAGWSPLHIAASAGX---DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE----GGA---------- 130 (231)
T ss_dssp C-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC----------
T ss_pred c-CCCCCCHHHHHHHcCH---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC----------
Confidence 8 9999999999999999 999999999999999999999999999999999888877765 342
Q ss_pred ccccccccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCCCccccccccCCCCCCCCCCccccccccccccc
Q 005175 169 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFR 244 (710)
Q Consensus 169 ~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~De~g 244 (710)
+++..|..|.||||+|+..|+.++++.+ ++.+..+..|.||||+|+..++.++++.|++.|++++..|..+
T Consensus 131 -----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 205 (231)
T 3aji_A 131 -----NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE 205 (231)
T ss_dssp -----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred -----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence 4566788899999999999999996655 5667888899999999999999999999999999999999999
Q ss_pred ccccccc
Q 005175 245 MFSFKIR 251 (710)
Q Consensus 245 ~~~f~v~ 251 (710)
.++++++
T Consensus 206 ~t~l~~A 212 (231)
T 3aji_A 206 KTPLQVA 212 (231)
T ss_dssp CCHHHHS
T ss_pred CCHHHHH
Confidence 9988876
No 15
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=2.1e-30 Score=258.23 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=180.2
Q ss_pred ChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC--CCccc-
Q 005175 12 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS--ADVNV- 88 (710)
Q Consensus 12 G~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G--ADVN~- 88 (710)
|.||||+||..|++++|+.||+.....++.. +..|+||||+|+..|+.+++++||++ | ++++.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~ 67 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-------------DQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDY 67 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccC-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccc
Confidence 6899999999999999999999543333333 68999999999999999999999999 8 66666
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC--CCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcc
Q 005175 89 SCGSDRTTALHCAASGGSANVVDVVRLLLSAG--ADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASG 166 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G--Ad~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~ 166 (710)
. +..|.||||+|+..|+ .+++++|+++| ++++..|..|.||||+|+..|+.++++.|++ .|+
T Consensus 68 ~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~-------- 131 (228)
T 2dzn_A 68 P-DDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE----NGA-------- 131 (228)
T ss_dssp C-CTTSCCHHHHHHHHCC---HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTC--------
T ss_pred C-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH----cCC--------
Confidence 5 8899999999999999 99999999998 9999999999999999999999888877766 343
Q ss_pred ccccccccccCCCCCCCChhchhHhhCCCchhhhcc-----CCCccccCCCCccccccccCCCCCCCCCC-ccccccccc
Q 005175 167 AEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKREYPIDPSLP-DIKNSIYAT 240 (710)
Q Consensus 167 ~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~-----d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~-d~ga~i~~~ 240 (710)
+++..|..|.||||+|+..|+.++++.++ +.+..+..|.||||+|+..++.+++..|+ +.|++++..
T Consensus 132 -------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~ 204 (228)
T 2dzn_A 132 -------SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204 (228)
T ss_dssp -------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCB
T ss_pred -------CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCcc
Confidence 56777899999999999999999977765 45577889999999999999999999999 889999999
Q ss_pred ccccccccccc
Q 005175 241 DEFRMFSFKIR 251 (710)
Q Consensus 241 De~g~~~f~v~ 251 (710)
|..|.++++++
T Consensus 205 ~~~g~t~l~~A 215 (228)
T 2dzn_A 205 DNKGAKAEDVA 215 (228)
T ss_dssp CTTSCBGGGGC
T ss_pred CCCCCcHHHHH
Confidence 99999999887
No 16
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=3.5e-30 Score=263.03 Aligned_cols=207 Identities=23% Similarity=0.230 Sum_probs=187.6
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+|+..|+.++|++|++ .|++++.. +..|+||||+|+..|+.+++++|+++
T Consensus 62 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNEC-------------DFYGFTAFMEAAVYGKVKALKFLYKR 127 (285)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CcccCCHHHHHHHhCCHHHHHHHHHh
Confidence 78899999999999999999999999999999 88888876 58999999999999999999999999
Q ss_pred CCCCccccc---------CCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 005175 82 SSADVNVSC---------GSDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPIDVIVLPPKLDSMRAILE 151 (710)
Q Consensus 82 ~GADVN~~~---------d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 151 (710)
|++++... +..|.||||+|+..|+ .+++++|++. |++++..|..|+||||+|+..++.+.+..+++
T Consensus 128 -g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~ 203 (285)
T 1wdy_A 128 -GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203 (285)
T ss_dssp -TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC---HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHH
T ss_pred -CCCcccccccHHHHHhhccCCCcHHHHHHHcCC---HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHH
Confidence 99998762 5679999999999999 9999999998 99999999999999999999999655556666
Q ss_pred HHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhcc-----CCCccccCCCCccccccccCCCCC
Q 005175 152 EVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKREYPI 226 (710)
Q Consensus 152 ~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~-----d~n~~~~~g~TpLh~Aa~~g~~~i 226 (710)
+|++.|+ +++..|..|.||||+|+..|+.+++++++ +.+..+..|.||||+|+..++.++
T Consensus 204 ~Ll~~g~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 204 LLLDHGA---------------DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp HHHHTTC---------------CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHcCC---------------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHH
Confidence 6777775 56778899999999999999999976554 567889999999999999999999
Q ss_pred CCCCCcccccccccc
Q 005175 227 DPSLPDIKNSIYATD 241 (710)
Q Consensus 227 ~~~L~d~ga~i~~~D 241 (710)
++.|++.|++++..|
T Consensus 269 ~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 269 AELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHSSCSCCSS
T ss_pred HHHHHHcCCCCCccc
Confidence 999999999998877
No 17
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=4.3e-31 Score=283.50 Aligned_cols=210 Identities=14% Similarity=0.144 Sum_probs=187.2
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
+.+++..|.+|.||||+||..|++++|++||+ .|++++.. |..|.||||+||..|+.++|++||++
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~ 75 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQ-------------NRFGCTALHLACKFGCVDTAKYLASV 75 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHCCHHHHHHHHHH
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------CCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 35677889999999999999999999999999 78999887 58999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC----CCCCCC-----------------CCCCCCcHHHHHhcC
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA----GADPDC-----------------VDANGHHPIDVIVLP 140 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~----GAd~n~-----------------~D~~G~TPLhlAa~~ 140 (710)
|++++. .+|.||||+|+..|+ .++|++|+++ |++++. .|..|.||||+|+..
T Consensus 76 -g~~~~~---~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 148 (364)
T 3ljn_A 76 -GEVHSL---WHGQKPIHLAVMANK---TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL 148 (364)
T ss_dssp -CCCCCC---BTTBCHHHHHHHTTC---HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS
T ss_pred -CCCccc---cCCCCHHHHHHHcCC---HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc
Confidence 997764 489999999999999 9999999999 888887 899999999999999
Q ss_pred C--CHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccC---------CCcccc
Q 005175 141 P--KLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS---------SPMALK 209 (710)
Q Consensus 141 G--~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d---------~n~~~~ 209 (710)
| +.++++.|++. |+ +++..|..|.||||+|+..|+.+++++|++ ++..+.
T Consensus 149 g~~~~~~v~~Ll~~----ga---------------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 209 (364)
T 3ljn_A 149 GPEYLEMIKILVQL----GA---------------SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209 (364)
T ss_dssp CGGGHHHHHHHHHH----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT
T ss_pred CCchHHHHHHHHHc----CC---------------CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC
Confidence 9 98988888774 32 566778999999999999999999777764 778889
Q ss_pred CCCCccccccccCCCCCCCCCCcccccccccccccccccccc
Q 005175 210 FNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 210 ~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~De~g~~~f~v~ 251 (710)
.|.||||+|+..++.++++.|++.|++++..|..+.++++++
T Consensus 210 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp TCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999887
No 18
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=1.9e-30 Score=259.40 Aligned_cols=194 Identities=21% Similarity=0.212 Sum_probs=174.3
Q ss_pred CCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 005175 5 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 84 (710)
Q Consensus 5 in~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 84 (710)
++..|.+|.||||+|+..|++++|++|++ .|++++.. +..|+||||+|+..|+.+++++|+++ |+
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~ 97 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDK-------------DDAGWSPLHIAASAGXDEIVKALLVK-GA 97 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TC
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCc-------------CCCCCCHHHHHHHcCHHHHHHHHHHc-CC
Confidence 56778999999999999999999999999 78888876 58899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhh
Q 005175 85 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA 164 (710)
Q Consensus 85 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a 164 (710)
+++.. +..|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+..|+.++++.|++ .++
T Consensus 98 ~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~------ 163 (231)
T 3aji_A 98 HVNAV-NQNGCTPLHYAASKNR---HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKA------ 163 (231)
T ss_dssp CTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTC------
T ss_pred CCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh----cCC------
Confidence 99999 9999999999999999 999999999999999999999999999999999888877766 343
Q ss_pred ccccccccccccCCCCCCCChhchhHhhCCCchhhh----ccCCCccccCCCCccccccccCCCCCCCCCCccccc
Q 005175 165 SGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNS 236 (710)
Q Consensus 165 a~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~----l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~ 236 (710)
+++..|..|.||||+|+..|+.+++++ +++.+..+..|.|||++|...++..+.+.|.+.+++
T Consensus 164 ---------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 164 ---------STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp ---------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred ---------CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 566778999999999999999999555 556778899999999999988887777777666544
No 19
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=1.9e-30 Score=260.00 Aligned_cols=192 Identities=20% Similarity=0.211 Sum_probs=169.9
Q ss_pred CChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc----
Q 005175 11 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV---- 86 (710)
Q Consensus 11 dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV---- 86 (710)
.|.||||+||..|++++|+.||+..|++++.. |..|+||||+||..|+.++|++||++ |+++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~ 67 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-------------GAMGETALHIAALYDNLEAAMVLMEA-APELVFEP 67 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-Cchhcccc
Confidence 58999999999999999999999669999887 58999999999999999999999999 9987
Q ss_pred -ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC-------------CCCcHHHHHhcCCCHHHHHHHHHH
Q 005175 87 -NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA-------------NGHHPIDVIVLPPKLDSMRAILEE 152 (710)
Q Consensus 87 -N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~-------------~G~TPLhlAa~~G~~eivk~LLe~ 152 (710)
+.. +..|.||||+|+..|+ .++|++|+++|++++..+. .|.||||+|+..|+.++++.|++
T Consensus 68 ~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~- 142 (232)
T 2rfa_A 68 MTSE-LYEGQTALHIAVINQN---VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE- 142 (232)
T ss_dssp CCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-
T ss_pred cccc-CCCCcCHHHHHHHcCC---HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH-
Confidence 555 7799999999999999 9999999999999999876 79999999999999888877765
Q ss_pred HHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchh----hhccCC----------CccccCCCCccccc
Q 005175 153 VFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSP----SRLVSS----------PMALKFNDVSFGTG 218 (710)
Q Consensus 153 Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eil----e~l~d~----------n~~~~~g~TpLh~A 218 (710)
.|+ +++..|..|.||||+|+..|+.+++ +.+++. +..+..|.||||+|
T Consensus 143 ---~ga---------------~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A 204 (232)
T 2rfa_A 143 ---HGA---------------DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204 (232)
T ss_dssp ---TTC---------------CTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH
T ss_pred ---CCC---------------CCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH
Confidence 343 5677899999999999999999876 666543 36788899999999
Q ss_pred cccCCCCCCCCCCcccccccc
Q 005175 219 AEKREYPIDPSLPDIKNSIYA 239 (710)
Q Consensus 219 a~~g~~~i~~~L~d~ga~i~~ 239 (710)
+..++.++++.|++.+.....
T Consensus 205 ~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp HHHTCHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHhcCccchh
Confidence 999999999999988766544
No 20
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.8e-30 Score=265.58 Aligned_cols=209 Identities=21% Similarity=0.252 Sum_probs=142.8
Q ss_pred CCCCCCCChhHHHHHHHcCCHH-HHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 005175 5 STAETEDSFTSMLELASNNDVE-GFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS 83 (710)
Q Consensus 5 in~~d~dG~TpLh~AA~~Gdle-~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G 83 (710)
++..+.++.||||+|+..++.+ ++++|++ .|+++|.. |.+|+||||+||..|+.++|++||+. |
T Consensus 45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~-~Gadvn~~-------------d~~G~TpLh~A~~~g~~~~v~~Ll~~-~ 109 (269)
T 4b93_B 45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPA-SGLGVNVT-------------SQDGSSPLHVAALHGRADLIPLLLKH-G 109 (269)
T ss_dssp -------------------------------CCCCTTCC-------------CTTSCCHHHHHHHTTCTTHHHHHHHT-T
T ss_pred ccccCccCCCHHHHHHHhCCHHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHhc-C
Confidence 5677889999999999988765 7788888 89999987 58999999999999999999999999 9
Q ss_pred CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhh
Q 005175 84 ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVV 163 (710)
Q Consensus 84 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~ 163 (710)
++++.. +.+|.||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++ .|+
T Consensus 110 a~~~~~-~~~g~t~l~~a~~~~~---~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~----~ga----- 176 (269)
T 4b93_B 110 ANAGAR-NADQAVPLHLACQQGH---FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ----HGA----- 176 (269)
T ss_dssp CCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHH----TTC-----
T ss_pred CCcCcc-CCCCCCccccccccCh---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH----CCC-----
Confidence 999999 9999999999999999 999999999999999999999999999999999998887765 443
Q ss_pred hccccccccccccCCCCCCCChhchhHhhCCCchhhh----ccCCCccccCCCCccccccccCC-CCCCCCCCcccccc-
Q 005175 164 ASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKRE-YPIDPSLPDIKNSI- 237 (710)
Q Consensus 164 aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~----l~d~n~~~~~g~TpLh~Aa~~g~-~~i~~~L~d~ga~i- 237 (710)
+++..+..|.||||+|+..|+.++|++ +++++++|..|.||||+|+++++ .++.+.|+..++.+
T Consensus 177 ----------dvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 177 ----------SINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246 (269)
T ss_dssp ----------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred ----------CCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence 567889999999999999999999555 56778899999999999998876 34445555544433
Q ss_pred --cccccccccccccc
Q 005175 238 --YATDEFRMFSFKIR 251 (710)
Q Consensus 238 --~~~De~g~~~f~v~ 251 (710)
..+|......++++
T Consensus 247 ~~~~td~~~~~~~~ir 262 (269)
T 4b93_B 247 DVAETDRKEYVTVKIR 262 (269)
T ss_dssp ----------------
T ss_pred hccCCChhhhHHHHHh
Confidence 33444443334443
No 21
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=6.6e-31 Score=274.80 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=178.5
Q ss_pred CCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 005175 3 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 82 (710)
Q Consensus 3 anin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 82 (710)
.+++..|.+|.||||+||..|++++|++||+ .|++++.. +|+||||+||..|+.++|++||++
T Consensus 22 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~---------------~g~t~L~~A~~~g~~~~v~~Ll~~- 84 (285)
T 3kea_A 22 KDTFKADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLL---------------ENEFPLHQAATLEDTKIVKILLFS- 84 (285)
T ss_dssp TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCC---------------TTCCHHHHHTTSSSCHHHHHHHHT-
T ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCC---------------CCCCHHHHHHHcCCHHHHHHHHHC-
Confidence 3688999999999999999999999999999 78888864 589999999999999999999999
Q ss_pred CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCC-CcHHHHHhcCCCHHHHHHHHHHHHhCCCCch
Q 005175 83 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG-HHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 161 (710)
Q Consensus 83 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G-~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 161 (710)
|+++|.. +..|+||||+|+..|+ .++|++|+++|++++..|..| .||||+|+..|+.++++.|++ .++.
T Consensus 85 ga~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~----~g~~-- 154 (285)
T 3kea_A 85 GLDDSQF-DDKGNTALYYAVDSGN---MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS----EIPS-- 154 (285)
T ss_dssp TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHT----TSCT--
T ss_pred CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCc--
Confidence 9999999 9999999999999999 999999999999999999999 799999999999888876665 3421
Q ss_pred hhhccccccccccccCCCC-CCCChhchhHhhCCCchhhhc----cCCCccccCCCCc-cccccccCCCCCCCCCCcccc
Q 005175 162 VVASGAEHNLTVSIGSSNS-DYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVS-FGTGAEKREYPIDPSLPDIKN 235 (710)
Q Consensus 162 ~~aa~~~~~l~~~in~~d~-~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~Tp-Lh~Aa~~g~~~i~~~L~d~ga 235 (710)
. .+. .|.||||+|+..|+.+++++| ++++..+..|.|| ||+|+..++.++++.|++.|+
T Consensus 155 -------------~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga 219 (285)
T 3kea_A 155 -------------T--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI 219 (285)
T ss_dssp -------------T--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB
T ss_pred -------------c--ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC
Confidence 1 122 789999999999999995555 5778899999998 999999999999999999999
Q ss_pred ccccccc
Q 005175 236 SIYATDE 242 (710)
Q Consensus 236 ~i~~~De 242 (710)
+++..|.
T Consensus 220 d~~~~~~ 226 (285)
T 3kea_A 220 NIYSANL 226 (285)
T ss_dssp CSTTTTG
T ss_pred CCCCCCh
Confidence 9998884
No 22
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.7e-30 Score=270.60 Aligned_cols=215 Identities=17% Similarity=0.180 Sum_probs=161.4
Q ss_pred CCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH-HHHHHHHhcCCCC
Q 005175 7 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV-DVLKLILLHSSAD 85 (710)
Q Consensus 7 ~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~-evVklLLe~~GAD 85 (710)
.+|..+.++|+.||..|++++|++||+ .+.+.... ........+..|.||||.|+..+.. .++++|++. |+|
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~-~~~~~~~~-----~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gad 78 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLE-WTEEDLED-----AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLG 78 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHT-CC---------------------------------------------C-CCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHH-CCCccccc-----ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCC
Confidence 467778999999999999999999999 55442211 0112233467899999999998876 488999999 999
Q ss_pred cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhc
Q 005175 86 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVAS 165 (710)
Q Consensus 86 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa 165 (710)
||.+ |.+|+||||+||..|+ .++|++||+.|++++..+.+|.||+|+|+..++.++++.|++ .|+
T Consensus 79 vn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~----~g~------- 143 (269)
T 4b93_B 79 VNVT-SQDGSSPLHVAALHGR---ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD----SNA------- 143 (269)
T ss_dssp TTCC-CTTSCCHHHHHHHTTC---TTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTC-------
T ss_pred CCCc-CCCCCCHHHHHHHcCc---HHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH----CCC-------
Confidence 9999 9999999999999999 999999999999999999999999999999999888877665 443
Q ss_pred cccccccccccCCCCCCCChhchhHhhCCCchhhh----ccCCCccccCCCCccccccccCCCCCCCCCCcccccccccc
Q 005175 166 GAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATD 241 (710)
Q Consensus 166 ~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~----l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D 241 (710)
+++..|..|.||||+|+..|+.+++++ +++++..+..|.||||+|+..|+.++++.|++.|++++..|
T Consensus 144 --------~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 144 --------KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN 215 (269)
T ss_dssp --------CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred --------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 567789999999999999999999555 46778899999999999999999999999999999999999
Q ss_pred cccccccccc
Q 005175 242 EFRMFSFKIR 251 (710)
Q Consensus 242 e~g~~~f~v~ 251 (710)
..|.++++++
T Consensus 216 ~~G~TpL~~A 225 (269)
T 4b93_B 216 KRQRTAVDCA 225 (269)
T ss_dssp TTSCCSGGGS
T ss_pred CCCCCHHHHH
Confidence 9999999987
No 23
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=3.9e-30 Score=262.88 Aligned_cols=194 Identities=20% Similarity=0.206 Sum_probs=169.8
Q ss_pred CCCCC-CCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005175 2 NNNST-AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 80 (710)
Q Consensus 2 Ganin-~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 80 (710)
|++++ ..|.+|.||||+||..|+.++|++||+ .|++++.. +..|+||||+|+..|+.+++++||+
T Consensus 46 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 111 (253)
T 1yyh_A 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQ-------------DNMGRTPLHAAVSADAQGVFQILIR 111 (253)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45554 358899999999999999999999999 88999887 5899999999999999999999999
Q ss_pred cCCC-CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 005175 81 HSSA-DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNS 159 (710)
Q Consensus 81 ~~GA-DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~ 159 (710)
+ ++ +++.. +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++ .|+
T Consensus 112 ~-~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga- 181 (253)
T 1yyh_A 112 N-RATDLDAR-MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----NGA- 181 (253)
T ss_dssp S-TTSCTTCC-CTTCCCHHHHHHHHTC---SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH----TTC-
T ss_pred c-CCCCcccc-CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCC-
Confidence 9 65 99998 9999999999999999 999999999999999999999999999999999888877665 343
Q ss_pred chhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCCCccccccccCCCCCCCCCCcc
Q 005175 160 SVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDI 233 (710)
Q Consensus 160 ~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ 233 (710)
+++..|..|.||||+|+..|+.++++.| ++.+..+..|.||+++|+++++.+++..|...
T Consensus 182 --------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 182 --------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp --------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred --------------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 5667789999999999999999995554 56678899999999999999998887666443
No 24
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=3.3e-30 Score=283.11 Aligned_cols=213 Identities=23% Similarity=0.258 Sum_probs=172.1
Q ss_pred CCCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005175 1 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 80 (710)
Q Consensus 1 ~Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 80 (710)
.|++++..+..|.||||+||..|++++|++||+ .|++++.. +..|.||||+||..|+.++|++||+
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVS-------------NVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHH-TTCCSCCS-------------SSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 378999999999999999999999999999999 78998876 5789999999999999999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCc
Q 005175 81 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSS 160 (710)
Q Consensus 81 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~ 160 (710)
+ |+++|.+ +.+|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+..|+.++++.|++. ++
T Consensus 69 ~-g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~-- 137 (437)
T 1n11_A 69 N-KAKVNAK-AKDDQTPLHCAARIGH---TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK----EA-- 137 (437)
T ss_dssp H-TCCSSCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TC--
T ss_pred C-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CC--
Confidence 9 9999999 9999999999999999 9999999999999999999999999999999999988877763 32
Q ss_pred hhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhcc----CCCccccCCCCccccccccCCCCCCCCCCccccc
Q 005175 161 VVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNS 236 (710)
Q Consensus 161 ~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~----d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~ 236 (710)
+++..+..|.||||+|+..|+.+++++++ +.+..+..|.||||+|+..++.++++.|++.+.+
T Consensus 138 -------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 204 (437)
T 1n11_A 138 -------------SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204 (437)
T ss_dssp -------------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred -------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 23445667788888888888887755554 4556677788888888888888888888888777
Q ss_pred ccccccccccccccc
Q 005175 237 IYATDEFRMFSFKIR 251 (710)
Q Consensus 237 i~~~De~g~~~f~v~ 251 (710)
+...+..+.++++.+
T Consensus 205 ~~~~~~~g~t~L~~A 219 (437)
T 1n11_A 205 PHSPAWNGYTPLHIA 219 (437)
T ss_dssp SCCCCTTCCCHHHHH
T ss_pred CCCcCCCCCCHHHHH
Confidence 777777676666654
No 25
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=3.9e-29 Score=243.32 Aligned_cols=157 Identities=31% Similarity=0.439 Sum_probs=143.8
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 005175 14 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD 93 (710)
Q Consensus 14 TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~ 93 (710)
+.|+.||+.|++++|+.||+ .|+++|.. |.+|+||||+|+..|+.+++++||++ |+|++.+ +.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~-------------d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~-d~~ 69 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNAS-------------DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSD 69 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTT
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhh-ccC
Confidence 57999999999999999999 89999987 58999999999999999999999999 9999999 999
Q ss_pred CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccc
Q 005175 94 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTV 173 (710)
Q Consensus 94 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~ 173 (710)
|+||||+|+..|+ .++|++||++|+|+|.+|.+|+||||+|+..|+.++++.|++ .|+
T Consensus 70 g~TpLh~A~~~g~---~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~----~ga--------------- 127 (169)
T 4gpm_A 70 GRTPLHHAAENGH---KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS----KGA--------------- 127 (169)
T ss_dssp SCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC---------------
T ss_pred CCCHHHHHHHcCC---HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC---------------
Confidence 9999999999999 999999999999999999999999999999999888877665 443
Q ss_pred cccCCCCCCCChhchhHhhCCCchhhhccCCCccc
Q 005175 174 SIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL 208 (710)
Q Consensus 174 ~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~ 208 (710)
+++.+|.+|.||||+|+..|+.+++++|++.++..
T Consensus 128 d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 56778999999999999999999999999887543
No 26
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=3.1e-30 Score=276.91 Aligned_cols=204 Identities=13% Similarity=0.111 Sum_probs=179.5
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+||..|+.++|++||+ .+++++. .+|.||||+|+..|+.++|++||++
T Consensus 43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~---------------~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHSL---------------WHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH-HCCCCCC---------------BTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCccc---------------cCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 78999999999999999999999999999999 6665553 4799999999999999999999997
Q ss_pred C---CCCccc-----------------ccCCCCCcHHHHHHhCC--CCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc
Q 005175 82 S---SADVNV-----------------SCGSDRTTALHCAASGG--SANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL 139 (710)
Q Consensus 82 ~---GADVN~-----------------~~d~~G~TPLH~Aa~~G--~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~ 139 (710)
. |++++. . +..|.||||+|+..| + .++|++||++|++++.+|..|+||||+|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~ 182 (364)
T 3ljn_A 107 AKERGQMPESLLNECDEREVNEIGSHVK-HCKGQTALHWCVGLGPEY---LEMIKILVQLGASPTAKDKADETPLMRAME 182 (364)
T ss_dssp HHHHTCCHHHHHTCCCCCCEEEETTEEE-EESCCCHHHHHHHSCGGG---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccCCCHHHHHhhcchHhhhhhccccC-CCCCCCHHHHHHHcCCch---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 2 566666 6 789999999999999 8 999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCCCcc
Q 005175 140 PPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSF 215 (710)
Q Consensus 140 ~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpL 215 (710)
.|+.++++.|++..... ...+++..|..|.||||+|+..|+.+++++| ++++..+..|.|||
T Consensus 183 ~g~~~~v~~Ll~~g~~~--------------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 248 (364)
T 3ljn_A 183 FRNREALDLMMDTVPSK--------------SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL 248 (364)
T ss_dssp TTCHHHHHHHHHHCSCS--------------SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred cCCHHHHHHHHhccccc--------------ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 99999988888752221 1225788899999999999999999996655 56678899999999
Q ss_pred ccccccCCCCCCCCCCcccccccc
Q 005175 216 GTGAEKREYPIDPSLPDIKNSIYA 239 (710)
Q Consensus 216 h~Aa~~g~~~i~~~L~d~ga~i~~ 239 (710)
|+|+..++..+++.|++.++.+..
T Consensus 249 ~~A~~~g~~~~v~~Ll~~~~~~~~ 272 (364)
T 3ljn_A 249 YLSVRAAMVLLTKELLQKTDVFLI 272 (364)
T ss_dssp HHHHHTCCHHHHHHHHHHSCHHHH
T ss_pred HHHHHhChHHHHHHHHHcCCchhh
Confidence 999999999999999998877644
No 27
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=9.5e-31 Score=263.67 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=177.0
Q ss_pred CCCCCCChhHHHHHHHcCCHHHHHHHHhcCC---CCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 005175 6 TAETEDSFTSMLELASNNDVEGFKRMLERDP---SSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 82 (710)
Q Consensus 6 n~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~g---adVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 82 (710)
+..|.+|.||||+||..|+.++|+.||+... +++|.. +..|+||||+||..|+.++|++||++
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~- 67 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-------------NNLQQTPLHLAVITNQPEIAEALLGA- 67 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-------------CTTCCCHHHHHHHTTCHHHHHCCCSC-
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-
Confidence 4578999999999999999999999998432 356665 58899999999999999999999999
Q ss_pred CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC------CCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhC
Q 005175 83 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD------PDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGS 156 (710)
Q Consensus 83 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd------~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ 156 (710)
|++++.. +..|.||||+|+..|+ .+++++|+++|++ ++..|..|.||||+|+..|+.++++.|++.
T Consensus 68 g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---- 139 (236)
T 1ikn_D 68 GCDPELR-DFRGNTPLHLACEQGC---LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL---- 139 (236)
T ss_dssp CCCSCCC-CTTCCCHHHHHHHHTC---HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH----
T ss_pred CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc----
Confidence 9999999 9999999999999999 9999999999987 567888999999999999999988887764
Q ss_pred CCCchhhhccccccccccccCCCC-CCCChhchhHhhCCCchhhhcc----CCCccccCCCCccccccccCCCCCCCCCC
Q 005175 157 KNSSVVVASGAEHNLTVSIGSSNS-DYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLP 231 (710)
Q Consensus 157 ga~~~~~aa~~~~~l~~~in~~d~-~G~TPLH~Aa~~G~~eile~l~----d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~ 231 (710)
|+ +++..+. .|.||||+|+..|+.+++++|+ +++..+..|.||||+|+..++.++++.|+
T Consensus 140 g~---------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 204 (236)
T 1ikn_D 140 GA---------------DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204 (236)
T ss_dssp TC---------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred CC---------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHH
Confidence 32 4566676 8999999999999999966654 66678899999999999999999999999
Q ss_pred ccccccc--ccccccccccccc
Q 005175 232 DIKNSIY--ATDEFRMFSFKIR 251 (710)
Q Consensus 232 d~ga~i~--~~De~g~~~f~v~ 251 (710)
+.|++.. ..+..+.+++...
T Consensus 205 ~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 205 QLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp TTSCGGGSSCCCCCTTTCCCCC
T ss_pred HcchhhhhcCCccchHHHHhhh
Confidence 9998765 5666666666554
No 28
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=1.1e-29 Score=278.96 Aligned_cols=231 Identities=19% Similarity=0.184 Sum_probs=158.6
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
+++++..+.+|.||||+|+..|+++++++|++ .+++++.. +..|.||||+|+..|+.++|++|+++
T Consensus 136 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 201 (437)
T 1n11_A 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAA-------------GKNGLTPLHVAVHHNNLDIVKLLLPR 201 (437)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CSSCCCHHHHHHHTTCHHHHHHHGGG
T ss_pred CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 56677778888888888888888888888888 77777765 34555666666666666666666665
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhC-----
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGS----- 156 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~----- 156 (710)
|++++.. +..|.||||+|+..|+ .+++++|+++|++++..+..|.||||+|+..|+.++++.|++.....
T Consensus 202 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 276 (437)
T 1n11_A 202 -GGSPHSP-AWNGYTPLHIAAKQNQ---VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276 (437)
T ss_dssp -TCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred -CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC
Confidence 5555555 5555666666666665 56666666666666655555666666666655555554444321110
Q ss_pred -CCCchhhhcccccc--------ccccccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCCCccccccccCC
Q 005175 157 -KNSSVVVASGAEHN--------LTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKRE 223 (710)
Q Consensus 157 -ga~~~~~aa~~~~~--------l~~~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~ 223 (710)
|.++++.++..+.. ...+++..|..|.||||+|+..|+.+++++| ++++.++..|.||||+|+..++
T Consensus 277 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~ 356 (437)
T 1n11_A 277 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 356 (437)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCCh
Confidence 01111111111110 0125677889999999999999999996665 5677888999999999999999
Q ss_pred CCCCCCCCcccccccccccccccccccc
Q 005175 224 YPIDPSLPDIKNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 224 ~~i~~~L~d~ga~i~~~De~g~~~f~v~ 251 (710)
.++++.|++.|++++..|..|.++++++
T Consensus 357 ~~iv~~Ll~~ga~~~~~~~~g~t~l~~A 384 (437)
T 1n11_A 357 TDIVTLLLKNGASPNEVSSDGTTPLAIA 384 (437)
T ss_dssp HHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999998876
No 29
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.96 E-value=8e-29 Score=248.64 Aligned_cols=186 Identities=24% Similarity=0.255 Sum_probs=168.3
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..+.+|.||||+|+..|++++|++|++ .|++++.. +..|.||||+|+..|+.+++++|++.
T Consensus 34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPK-------------DAEGSTCLHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 78899999999999999999999999999999 88888876 57899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCch
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 161 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 161 (710)
+.++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .++
T Consensus 100 ~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~--- 168 (237)
T 3b7b_A 100 GQMDVNCQ-DDGGWTPMIWATEYKH---VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA----AKC--- 168 (237)
T ss_dssp TCCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT----TTC---
T ss_pred CCCCcccC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH----cCC---
Confidence 33899998 9999999999999999 999999999999999999999999999999999887776655 443
Q ss_pred hhhccccccccccccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCCCccccccccCCC
Q 005175 162 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREY 224 (710)
Q Consensus 162 ~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~ 224 (710)
+++..|..|.||||+|+..|+.++++++ ++.+.+++.|.||||+|+..++.
T Consensus 169 ------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 169 ------------DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp ------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred ------------CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence 5667789999999999999999995555 56678899999999999988764
No 30
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=1.9e-30 Score=281.44 Aligned_cols=221 Identities=16% Similarity=0.159 Sum_probs=192.9
Q ss_pred CCCCCCCC-CCChhHHHHHHHcCCHHHHHHHHh-------cCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHH
Q 005175 2 NNNSTAET-EDSFTSMLELASNNDVEGFKRMLE-------RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVD 73 (710)
Q Consensus 2 Ganin~~d-~dG~TpLh~AA~~Gdle~Vk~LLe-------~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~e 73 (710)
+.+++..| .+|.||||+||..|+.++|++||. ..|+++|.. |.+|.||||+||..|+.+
T Consensus 114 ~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-------------d~~g~TpL~~A~~~g~~~ 180 (373)
T 2fo1_E 114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-------------DCDENTPLMLAVLARRRR 180 (373)
T ss_dssp TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-------------CTTSCCHHHHHHHHTCHH
T ss_pred cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-------------CCCCCCHHHHHHHcChHH
Confidence 45778888 789999999999999999888873 388999887 589999999999999999
Q ss_pred HHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC---CCCCCCCCCCCcHHHHHhcCC---CHHHHH
Q 005175 74 VLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG---ADPDCVDANGHHPIDVIVLPP---KLDSMR 147 (710)
Q Consensus 74 vVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G---Ad~n~~D~~G~TPLhlAa~~G---~~eivk 147 (710)
+|++||++ |++++.. +..|.||||+|+..|+ .++|++|+++| ++++..|..|.||||+|+..+ +.++++
T Consensus 181 iv~~Ll~~-ga~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~ 255 (373)
T 2fo1_E 181 LVAYLMKA-GADPTIY-NKSERSALHQAAANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255 (373)
T ss_dssp HHHHHHHT-TCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHHC-CCCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHH
Confidence 99999999 9999999 9999999999999999 99999999998 899999999999999999987 777777
Q ss_pred HHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhcc-----CCCccccCCCCccccccccC
Q 005175 148 AILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKR 222 (710)
Q Consensus 148 ~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~-----d~n~~~~~g~TpLh~Aa~~g 222 (710)
.|++. |++... ......+..|..|.||||+|+..|+.++|++|+ +.+..+..|.||||+|+..+
T Consensus 256 ~Ll~~----g~~~~~-------~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g 324 (373)
T 2fo1_E 256 LLVEK----GAKVDY-------DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324 (373)
T ss_dssp HHHHH----TCCSSC-------CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHC----CCCccc-------ccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence 77664 322110 001134557889999999999999999977654 66688999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccccc
Q 005175 223 EYPIDPSLPDIKNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 223 ~~~i~~~L~d~ga~i~~~De~g~~~f~v~ 251 (710)
+.++++.|++.|++++..|..+.++++++
T Consensus 325 ~~~iv~~Ll~~gad~~~~d~~g~t~l~~A 353 (373)
T 2fo1_E 325 RIEVVMYLIQQGASVEAVDATDHTARQLA 353 (373)
T ss_dssp CHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred CHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence 99999999999999999999999998877
No 31
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=2.4e-29 Score=246.09 Aligned_cols=190 Identities=19% Similarity=0.230 Sum_probs=169.0
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 88 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 88 (710)
+..+.|+||.||..|+.+.|+.||+..+.+++.. |.+|.||||+||..|+.++|++||++ |++++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~ 67 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-------------DTEGNTPLNIAVHNNDIEIAKALIDR-GADINL 67 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCC
Confidence 3568999999999999999999999777788887 58999999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHH-HCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccc
Q 005175 89 SCGSDRTTALHCAASGGSANVVDVVRLLL-SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA 167 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLL-e~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~ 167 (710)
. +..|.||||+|+..|+ .+++++|+ ..+++++..|..|.||||+|+..|+.++++.|++. +.
T Consensus 68 ~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~--------- 130 (201)
T 3hra_A 68 Q-NSISDSPYLYAGAQGR---TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED----GR--------- 130 (201)
T ss_dssp C-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH----CC---------
T ss_pred C-CCCCCCHHHHHHHcCC---HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc----CC---------
Confidence 9 9999999999999999 99999999 66889999999999999999999999998888774 21
Q ss_pred cccccccccCCCCCCCChhchhHhhCC-----Cchh----hhccCCCccccCCCCccccccccCCCCCCCCCCccc
Q 005175 168 EHNLTVSIGSSNSDYSSPLLTASASGS-----PPSP----SRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIK 234 (710)
Q Consensus 168 ~~~l~~~in~~d~~G~TPLH~Aa~~G~-----~eil----e~l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~g 234 (710)
.+++..|..|.||||+|+..++ .+++ +.+++.+..+..|.||||+|+..++.++++.|++.|
T Consensus 131 -----~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 131 -----EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp -----CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred -----CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 1567789999999999999998 6664 455677889999999999999999988887776653
No 32
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.96 E-value=4.2e-29 Score=255.96 Aligned_cols=181 Identities=16% Similarity=0.147 Sum_probs=149.7
Q ss_pred CCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 005175 5 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 84 (710)
Q Consensus 5 in~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 84 (710)
++..+..|.||||+||..|++++|++||+ .|++++.. +..|+||||+|+..|+.+++++||++ |+
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~ 102 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVA-------------ERGGHTALHLACRVRAHTCACVLLQP-RP 102 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-------------CTTSCCHHHHHTTTTCHHHHHHHSSS-CC
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCcchhHhhhcc-CC
Confidence 78899999999999999999999999999 89999877 58999999999999999999999997 65
Q ss_pred C-----------------------------------------------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHH
Q 005175 85 D-----------------------------------------------VNVSCGSDRTTALHCAASGGSANVVDVVRLLL 117 (710)
Q Consensus 85 D-----------------------------------------------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL 117 (710)
+ ++.. +..|.||||+|+..|+ .++|++||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll 178 (282)
T 1oy3_D 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKD---AEMVRLLR 178 (282)
T ss_dssp SSCCCC-----------------------------------CCCGGGGTTCC-CTTSCCHHHHHHHTTC---HHHHHHHH
T ss_pred CCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc-CCCCcCHHHHHHHcCC---HHHHHHHH
Confidence 4 6777 8899999999999999 99999999
Q ss_pred HCCCCCCCCCCC-CCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCc
Q 005175 118 SAGADPDCVDAN-GHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPP 196 (710)
Q Consensus 118 e~GAd~n~~D~~-G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~e 196 (710)
++|++++..+.. |+||||+|+..|+.++++.|++ .|+ +++.+|..|.||||+|+..|+.+
T Consensus 179 ~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~ga---------------d~~~~d~~g~tpL~~A~~~~~~~ 239 (282)
T 1oy3_D 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK----AGA---------------DPTARMYGGRTPLGSALLRPNPI 239 (282)
T ss_dssp HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHTSSCHH
T ss_pred HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH----cCC---------------CCcccccCCCCHHHHHHHcCCcH
Confidence 999999999865 9999999999999888877666 343 56778999999999999999999
Q ss_pred hh----hhccCCCccccCCCCccccccccCC
Q 005175 197 SP----SRLVSSPMALKFNDVSFGTGAEKRE 223 (710)
Q Consensus 197 il----e~l~d~n~~~~~g~TpLh~Aa~~g~ 223 (710)
++ +++++++.++..|.|||++|.....
T Consensus 240 ~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHHHTTCCCCCCC---------------
T ss_pred HHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 84 4556778899999999999976553
No 33
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=2e-29 Score=267.80 Aligned_cols=214 Identities=22% Similarity=0.206 Sum_probs=180.7
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
+++++..|.+|.||||+|+..|+.+++++|++ .|++++... .........+..|.||||+||..|+.++|++||++
T Consensus 115 ~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~-~ga~~~~~~---~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~ 190 (337)
T 4g8k_A 115 GADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRR---KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 190 (337)
T ss_dssp TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCC---CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred cchhhhhccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcchhh---ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc
Confidence 57889999999999999999999999999999 888887643 11222334467899999999999999999999976
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCc
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSA-NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSS 160 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~-~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~ 160 (710)
.|+++|.. +..|.|+||+++..+.. ...+++++|+++|+++|.+|..|+||||+|+..|+.++++.|++. .+
T Consensus 191 ~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~--- 263 (337)
T 4g8k_A 191 MGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EH--- 263 (337)
T ss_dssp SCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TT---
T ss_pred cCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cC---
Confidence 69999999 99999999988765542 224689999999999999999999999999999999888766541 22
Q ss_pred hhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCccccCCCCccccccccCCCCCCCCCCcccccccc
Q 005175 161 VVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYA 239 (710)
Q Consensus 161 ~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~ 239 (710)
.+++.+|.+|.||||+|+..|+.++|++|++.++.. +..+|||+|+..++.++++.|++.|++++.
T Consensus 264 ------------~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~-n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 264 ------------IEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST-DCGDLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp ------------CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS-TTCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred ------------CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 267888999999999999999999999999888643 456799999999999999999999998865
No 34
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.96 E-value=4.7e-30 Score=270.45 Aligned_cols=223 Identities=20% Similarity=0.195 Sum_probs=185.3
Q ss_pred CCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 005175 7 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV 86 (710)
Q Consensus 7 ~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV 86 (710)
..+..+.|+||.||+.|+.+.|+.||...+.+++.. |..|.||||+||..|+.++|++||++ |+++
T Consensus 19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~ 84 (351)
T 3utm_A 19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-------------DGRKSTPLHLAAGYNRVRIVQLLLQH-GADV 84 (351)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-------------STTCCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred eeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence 445678899999999999999999998778888876 57899999999999999999999998 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcc
Q 005175 87 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASG 166 (710)
Q Consensus 87 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~ 166 (710)
|.. +..|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+..|+.++++.|++. |++.......
T Consensus 85 ~~~-~~~g~t~L~~A~~~g~---~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~ 156 (351)
T 3utm_A 85 HAK-DKGGLVPLHNACSYGH---YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH----GADPTLVNCH 156 (351)
T ss_dssp TCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTT
T ss_pred Ccc-CCCCCcHHHHHHHCCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCccccCC
Confidence 998 8999999999999999 9999999999999999999999999999999998888777664 3333222222
Q ss_pred cccccc---------------------------------------ccccCCCCCCCChhchhHhhCCC---ch----hhh
Q 005175 167 AEHNLT---------------------------------------VSIGSSNSDYSSPLLTASASGSP---PS----PSR 200 (710)
Q Consensus 167 ~~~~l~---------------------------------------~~in~~d~~G~TPLH~Aa~~G~~---ei----le~ 200 (710)
+...+. ......+..|.||||+|+..++. ++ ++.
T Consensus 157 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~ 236 (351)
T 3utm_A 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236 (351)
T ss_dssp SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT
T ss_pred CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc
Confidence 211111 11223567899999999999664 45 455
Q ss_pred ccCCCccccCCCCccccccccCCCCCCCCCCcccccccccccccccccccc
Q 005175 201 LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 201 l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~De~g~~~f~v~ 251 (710)
+++++..+..|.||||+|+..++.++++.|++.|++++..|..|.++++.+
T Consensus 237 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A 287 (351)
T 3utm_A 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 567888999999999999999999999999999999999999999999887
No 35
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=260.97 Aligned_cols=190 Identities=21% Similarity=0.241 Sum_probs=168.3
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+||..|+.++|++||+ .|++++.. |..|+||||+|+..|+.++|++||++
T Consensus 82 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 147 (285)
T 3d9h_A 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-------------TADWHTPLFNACVSGSWDCVNLLLQH 147 (285)
T ss_dssp TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCHHHHHHHHHHC
Confidence 68899999999999999999999999999999 78999877 58999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCch
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 161 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 161 (710)
|++++.. ..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 148 -g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga--- 214 (285)
T 3d9h_A 148 -GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE----SGA--- 214 (285)
T ss_dssp -TCCSSCS--CTTSCHHHHHHHHTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH----TTC---
T ss_pred -CCCCCCC--CCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH----CCC---
Confidence 9999875 569999999999999 999999999999999999999999999999999988887776 343
Q ss_pred hhhccccccccccccCCCCCCCChhchhHhhCCCchhhh----ccCCCccccCCCCccccccccCCCCCCCCCCcc
Q 005175 162 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDI 233 (710)
Q Consensus 162 ~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~----l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ 233 (710)
+++ .|..|.||||+|+..|+.+++++ +++.+.++..|.||||+|+. +.+++..|++.
T Consensus 215 ------------~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~ 275 (285)
T 3d9h_A 215 ------------DVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER 275 (285)
T ss_dssp ------------CTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred ------------CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence 233 37889999999999999999555 45777899999999999983 44566666554
No 36
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=1.4e-29 Score=274.74 Aligned_cols=201 Identities=14% Similarity=0.130 Sum_probs=178.9
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+||..|+.++|++||+ .|++++.. +..|.||||+|+..|+.++|++||++
T Consensus 156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~ 221 (373)
T 2fo1_E 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIY-------------NKSERSALHQAAANRDFGMMVYMLNS 221 (373)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCccc-------------CCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence 78999999999999999999999999999999 89999877 58999999999999999999999998
Q ss_pred CC---CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC--------CCCCCCcHHHHHhcCCCHHHHHHHH
Q 005175 82 SS---ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC--------VDANGHHPIDVIVLPPKLDSMRAIL 150 (710)
Q Consensus 82 ~G---ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~--------~D~~G~TPLhlAa~~G~~eivk~LL 150 (710)
+ ++++.. +..|.||||+|+..+....++++++|+++|++++. .|..|.||||+|+..|+.++++.|+
T Consensus 222 -~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll 299 (373)
T 2fo1_E 222 -TKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 299 (373)
T ss_dssp -HHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH
T ss_pred -CccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHH
Confidence 7 899999 99999999999999832239999999999999986 6779999999999999999998887
Q ss_pred HHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCCCccccccccCCCCC
Q 005175 151 EEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPI 226 (710)
Q Consensus 151 e~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~~i 226 (710)
+. .+ .+++..|..|.||||+|+..|+.+++++| ++++..+..|.||||+|+..++.++
T Consensus 300 ~~---~~---------------~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~i 361 (373)
T 2fo1_E 300 GE---KG---------------SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI 361 (373)
T ss_dssp HH---SC---------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred Hh---cC---------------CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHH
Confidence 63 11 26778899999999999999999996555 5677889999999999999999999
Q ss_pred CCCCCccccc
Q 005175 227 DPSLPDIKNS 236 (710)
Q Consensus 227 ~~~L~d~ga~ 236 (710)
+..|++.+++
T Consensus 362 v~~Ll~~~a~ 371 (373)
T 2fo1_E 362 VDIFDRCRPE 371 (373)
T ss_dssp HHHHHTTC--
T ss_pred HHHHHhcCcc
Confidence 9888877653
No 37
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=1.5e-28 Score=246.29 Aligned_cols=182 Identities=19% Similarity=0.198 Sum_probs=159.0
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+|+..|+.++|++||+ .++++.... ....|..|.||||+|+..|+.++|++||++
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~--------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 97 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLME-AAPELVFEP--------MTSELYEGQTALHIAVINQNVNLVRALLAR 97 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCC--------CCSTTTTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCchhcccc--------ccccCCCCcCHHHHHHHcCCHHHHHHHHhC
Confidence 78999999999999999999999999999999 566553211 122357899999999999999999999999
Q ss_pred CCCCcccccCC-------------CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHH
Q 005175 82 SSADVNVSCGS-------------DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRA 148 (710)
Q Consensus 82 ~GADVN~~~d~-------------~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~ 148 (710)
|++++.. +. .|.||||+|+..|+ .++|++|+++|+|++.+|..|+||||+|+..|+.++++.
T Consensus 98 -g~~~~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~ 172 (232)
T 2rfa_A 98 -GASVSAR-ATGSVFHYRPHNLIYYGEHPLSFAACVGS---EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQ 172 (232)
T ss_dssp -TCCTTCC-CCSGGGSCCTTCSCCCCSSHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHH
T ss_pred -CCCCCcc-cCCcceeecccccccCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHH
Confidence 9999987 54 79999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCc
Q 005175 149 ILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 206 (710)
Q Consensus 149 LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~ 206 (710)
++++|++.+++.. .....+..|..|.||||+|+..|+.+++++|++.+.
T Consensus 173 i~~~Ll~~g~~~~---------~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 173 MYNLLLSYDGGDH---------LKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHHHHHTTCSCS---------SCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCchh---------hhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 9999999986321 111225779999999999999999999999987663
No 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=249.10 Aligned_cols=211 Identities=18% Similarity=0.155 Sum_probs=183.2
Q ss_pred CCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 005175 4 NSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS 83 (710)
Q Consensus 4 nin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G 83 (710)
+++..|..|.|+|+.||..|++++|++|++ .|.+++.. +..|.||||+|+..|+.++|++|+++ |
T Consensus 1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~ 65 (240)
T 3eu9_A 1 HMTHIDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQP-------------DKENVTLLHWAAINNRIDLVKYYISK-G 65 (240)
T ss_dssp -CCCCSCGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred CccccccccchHHHHHHHcCChHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHhCCHHHHHHHHHc-C
Confidence 456778999999999999999999999999 78888876 58899999999999999999999999 9
Q ss_pred CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhh
Q 005175 84 ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVV 163 (710)
Q Consensus 84 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~ 163 (710)
++++...+..|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+..|+.++++.|++ .++
T Consensus 66 ~~~~~~~~~~~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~----~~~----- 133 (240)
T 3eu9_A 66 AIVDQLGGDLNSTPLHWATRQGH---LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA----KGQ----- 133 (240)
T ss_dssp CCTTCCBTTTTBCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-----
T ss_pred CcchhhcCCcCCChhHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHh----cCC-----
Confidence 99987756679999999999999 999999999999999999999999999999999888877766 332
Q ss_pred hccccccccccccCCCCCCCChhchhHhhCC-Cchhh----hccCCCcccc-CCCCccccccccCCCCCCCCCCcccccc
Q 005175 164 ASGAEHNLTVSIGSSNSDYSSPLLTASASGS-PPSPS----RLVSSPMALK-FNDVSFGTGAEKREYPIDPSLPDIKNSI 237 (710)
Q Consensus 164 aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~-~eile----~l~d~n~~~~-~g~TpLh~Aa~~g~~~i~~~L~d~ga~i 237 (710)
+++..+..|.||||+|+..++ .++++ .+++.+..+. .|.||||+|+..++.++++.|++.|+++
T Consensus 134 ----------~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 203 (240)
T 3eu9_A 134 ----------DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203 (240)
T ss_dssp ----------CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred ----------CccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 456678889999999997776 55544 4456666665 7889999999999999999999999999
Q ss_pred cccccccccccccc
Q 005175 238 YATDEFRMFSFKIR 251 (710)
Q Consensus 238 ~~~De~g~~~f~v~ 251 (710)
+..|..+.++++++
T Consensus 204 ~~~~~~g~t~l~~A 217 (240)
T 3eu9_A 204 DAQNIKGESALDLA 217 (240)
T ss_dssp TCBCTTSCBHHHHH
T ss_pred CCcCCCCCCHHHHH
Confidence 98888888888776
No 39
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=4.3e-28 Score=241.47 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=158.9
Q ss_pred CCCCCCChhHHHHHHHcCCHHHHHHHHhcCC--CCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 005175 6 TAETEDSFTSMLELASNNDVEGFKRMLERDP--SSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS 83 (710)
Q Consensus 6 n~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~g--adVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G 83 (710)
+..|.+|.||||+|+..|+.++|++|++ .+ .+++.. .+..|.||||+|+..|+.+++++||++ |
T Consensus 30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g 95 (228)
T 2dzn_A 30 LQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDY------------PDDSGWTPFHIACSVGNLEVVKSLYDR-P 95 (228)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TCTTCCGGGC------------CCTTSCCHHHHHHHHCCHHHHHHHHSS-S
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccc------------CCCCCCCHHHHHHHcCCHHHHHHHHhC-C
Confidence 3478999999999999999999999999 67 444431 257899999999999999999999999 7
Q ss_pred --CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCch
Q 005175 84 --ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 161 (710)
Q Consensus 84 --ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 161 (710)
++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++ .+.
T Consensus 96 ~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~--- 164 (228)
T 2dzn_A 96 LKPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG----LGK--- 164 (228)
T ss_dssp SCCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT----TTC---
T ss_pred CCcccccC-CcCCCCHHHHHHHcCC---HhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh----cCc---
Confidence 899998 9999999999999999 999999999999999999999999999999999887776665 341
Q ss_pred hhhccccccccccccCCCCCCCChhchhHhhCCCchhh-----hccCCCccccCCCCcccccccc
Q 005175 162 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPS-----RLVSSPMALKFNDVSFGTGAEK 221 (710)
Q Consensus 162 ~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile-----~l~d~n~~~~~g~TpLh~Aa~~ 221 (710)
.+++..|..|.||||+|+..|+.++++ .+++.+..+..|.||+++|...
T Consensus 165 -----------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 165 -----------SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp -----------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred -----------ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 156778999999999999999999844 4557888999999999999764
No 40
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=1.1e-29 Score=261.95 Aligned_cols=209 Identities=15% Similarity=0.155 Sum_probs=164.9
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhc---CCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHH
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLER---DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVL 75 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~---~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evV 75 (710)
++..+..|.+|.|+||+||..|++++|+.||+. .+.+++... ...+..|+||||+||.+ |+.++|
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------~~~~~~g~tpL~~A~~~~~~g~~~~v 73 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---------FKDPETGKTCLLKAMLNLHNGQNDTI 73 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---------GSCTTTCCCHHHHHHHSCBTTBCHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---------cccCcCCCCHHHHHHHHHhcCChHHH
Confidence 566778899999999999999999999999973 566665321 01257899999999987 999999
Q ss_pred HHHHhcCCCC-------ccc----ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC--------------CC
Q 005175 76 KLILLHSSAD-------VNV----SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA--------------NG 130 (710)
Q Consensus 76 klLLe~~GAD-------VN~----~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~--------------~G 130 (710)
++||++ |++ +|. . +..|+||||+|+..|+ .++|++||++|++++.++. .|
T Consensus 74 ~~Ll~~-ga~~~~~~~~i~~~~~~~-d~~g~tpL~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g 148 (273)
T 2pnn_A 74 ALLLDV-ARKTDSLKQFVNASYTDS-YYKGQTALHIAIERRN---MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFG 148 (273)
T ss_dssp HHHHHH-HHHTTCHHHHHTCCCCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSC
T ss_pred HHHHHh-hccccchhHHhhcccccc-cCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcCccccccccccccccccccCC
Confidence 999999 776 343 3 6689999999999999 9999999999999999997 79
Q ss_pred CcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCC---------Cchhhhc
Q 005175 131 HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS---------PPSPSRL 201 (710)
Q Consensus 131 ~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~---------~eile~l 201 (710)
.||||+|+..|+.++++.|++... .|+ +++.+|..|+||||+|+..|+ .++++.|
T Consensus 149 ~tpL~~A~~~g~~~~v~~Ll~~~~-~ga---------------d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~L 212 (273)
T 2pnn_A 149 ELPLSLAACTNQLAIVKFLLQNSW-QPA---------------DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI 212 (273)
T ss_dssp BSHHHHHHHTTCHHHHHHHHHCSS-CCC---------------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhccc-CCC---------------CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 999999999999888876665100 343 677889999999999999998 4655554
Q ss_pred ----cCCC-------ccccCCCCccccccccCCCCCCCCCCcccc-ccccc
Q 005175 202 ----VSSP-------MALKFNDVSFGTGAEKREYPIDPSLPDIKN-SIYAT 240 (710)
Q Consensus 202 ----~d~n-------~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga-~i~~~ 240 (710)
++.+ ..+..|.||||+|+..++.++++.|++.|+ +....
T Consensus 213 l~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~ 263 (273)
T 2pnn_A 213 LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECR 263 (273)
T ss_dssp HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-----
T ss_pred HHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhh
Confidence 4554 478899999999999999999999999988 44333
No 41
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=244.79 Aligned_cols=199 Identities=19% Similarity=0.232 Sum_probs=173.0
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..+.+|.||||+|+..|++++|++|++ .+.+++... +..|.||||+|+..|+.+++++|++.
T Consensus 32 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~------------~~~~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLG------------GDLNSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCB------------TTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhc------------CCcCCChhHHHHHcCCHHHHHHHHHc
Confidence 78899999999999999999999999999999 777777653 45699999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC-HHHHHHHHHHHHhCCCCc
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK-LDSMRAILEEVFGSKNSS 160 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~-~eivk~LLe~Ll~~ga~~ 160 (710)
|++++.. +..|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+..++ .++++.|++ .+.
T Consensus 99 -g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~----~~~-- 167 (240)
T 3eu9_A 99 -GADPSLI-DGEGCSCIHLAAQFGH---TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT----FNV-- 167 (240)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH----TTC--
T ss_pred -CCCCccc-CCCCCCHHHHHHHcCH---HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh----cCC--
Confidence 9999999 9999999999999999 999999999999999999999999999996655 566655554 443
Q ss_pred hhhhccccccccccccCCCC-CCCChhchhHhhCCCchhhh----ccCCCccccCCCCccccccccCCCCCCCCCCcccc
Q 005175 161 VVVASGAEHNLTVSIGSSNS-DYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKN 235 (710)
Q Consensus 161 ~~~aa~~~~~l~~~in~~d~-~G~TPLH~Aa~~G~~eile~----l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga 235 (710)
+++..+. .|.||||+|+..|+.++++. +++.+..+..|.|||++|+..++..+++.|++.+.
T Consensus 168 -------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 168 -------------SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp -------------CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred -------------CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 4455565 89999999999999999555 46778889999999999999999999988877765
Q ss_pred cc
Q 005175 236 SI 237 (710)
Q Consensus 236 ~i 237 (710)
..
T Consensus 235 ~~ 236 (240)
T 3eu9_A 235 AK 236 (240)
T ss_dssp --
T ss_pred cc
Confidence 43
No 42
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=1.9e-29 Score=257.23 Aligned_cols=199 Identities=18% Similarity=0.126 Sum_probs=165.4
Q ss_pred CChhHHHHHHHcCCHHHH----HHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCC
Q 005175 11 DSFTSMLELASNNDVEGF----KRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSS 83 (710)
Q Consensus 11 dG~TpLh~AA~~Gdle~V----k~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~G 83 (710)
.|.||||+||..|++++| ++|++ .+++++... ...|.+|+||||+||.. |+.++|++||++ |
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~---------~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g 69 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSA---------YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-D 69 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGG---------GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-H
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHH-cCCCccccc---------ccCCCCCCCHHHHHHHccccchHHHHHHHHhc-C
Confidence 388999999999999854 55555 788888711 01168999999999999 999999999999 8
Q ss_pred CCccccc----------CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHhcC
Q 005175 84 ADVNVSC----------GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDAN-------------GHHPIDVIVLP 140 (710)
Q Consensus 84 ADVN~~~----------d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~-------------G~TPLhlAa~~ 140 (710)
++++... +..|.||||+|+..|+ .++|++||++|++++.+|.. |.||||+|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 146 (256)
T 2etb_A 70 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS---LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146 (256)
T ss_dssp HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred CcccchhhhcccccccccccCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc
Confidence 8877431 3679999999999999 99999999999999999987 99999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHh--hCCCc-------hhhhc----cCC---
Q 005175 141 PKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASA--SGSPP-------SPSRL----VSS--- 204 (710)
Q Consensus 141 G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~--~G~~e-------ile~l----~d~--- 204 (710)
|+.++++.|++.. ..|+ +++..|..|+||||+|+. .++.+ +++.| ++.
T Consensus 147 ~~~~~v~~Ll~~~-~~ga---------------~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~ 210 (256)
T 2etb_A 147 KQWDVVTYLLENP-HQPA---------------SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210 (256)
T ss_dssp TCHHHHHHHHHCS-SCCC---------------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHhcc-ccCC---------------CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccc
Confidence 9988877666510 0343 677889999999999999 67766 65554 556
Q ss_pred ----CccccCCCCccccccccCCCCCCCCCCcccccccc
Q 005175 205 ----PMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYA 239 (710)
Q Consensus 205 ----n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~ 239 (710)
+..+..|.||||+|+..++.++++.|++.+.....
T Consensus 211 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 211 VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC
Confidence 78899999999999999999999999988766543
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.95 E-value=1.1e-27 Score=241.24 Aligned_cols=182 Identities=18% Similarity=0.168 Sum_probs=158.5
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
+++++..|.+|.||||+|+..|+.++|++||+ .|++++.. +..|+||||+|+..|+.++|++|+++
T Consensus 35 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 100 (236)
T 1ikn_D 35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-------------DFRGNTPLHLACEQGCLASVGVLTQS 100 (236)
T ss_dssp CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHS
T ss_pred HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 45789999999999999999999999999999 88999887 58999999999999999999999999
Q ss_pred CCCC------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC-CCCcHHHHHhcCCCHHHHHHHHHHHH
Q 005175 82 SSAD------VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA-NGHHPIDVIVLPPKLDSMRAILEEVF 154 (710)
Q Consensus 82 ~GAD------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~-~G~TPLhlAa~~G~~eivk~LLe~Ll 154 (710)
|++ ++.. +..|.||||+|+..|+ .++|++||++|++++.+|. .|+||||+|+..|+.++++.|++
T Consensus 101 -~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~--- 172 (236)
T 1ikn_D 101 -CTTPHLHSILKAT-NYNGHTCLHLASIHGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK--- 172 (236)
T ss_dssp -TTTTSSSCGGGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT---
T ss_pred -ccchhHHHHhhcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH---
Confidence 765 5666 8899999999999999 9999999999999999998 99999999999999887776655
Q ss_pred hCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCc------cccCCCCcccccccc
Q 005175 155 GSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM------ALKFNDVSFGTGAEK 221 (710)
Q Consensus 155 ~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~------~~~~g~TpLh~Aa~~ 221 (710)
.|+ +++..|..|.||||+|+..|+.+++++|++.++ .+..+.|+.+.+...
T Consensus 173 -~ga---------------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 173 -CGA---------------DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp -TTC---------------CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred -cCC---------------CCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 454 567789999999999999999999888887664 445566666655443
No 44
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=3.8e-28 Score=258.97 Aligned_cols=176 Identities=16% Similarity=0.054 Sum_probs=132.2
Q ss_pred CCCCCC-CCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCC---HHHHHH
Q 005175 2 NNNSTA-ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS---VDVLKL 77 (710)
Q Consensus 2 Ganin~-~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~---~evVkl 77 (710)
|+++|. .|.+|.||||+||..|++++|++||+ .|++++.. |.+|+||||+|+..|+ .++++.
T Consensus 120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~-------------d~~g~TpLh~A~~~g~~~~~~~~~~ 185 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYG-------------DNMGESCLVKAVKSVNNYDSGTFEA 185 (327)
T ss_dssp CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBC-------------CTTCCCHHHHHHHSSHHHHTTCHHH
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHhcccccHHHHHH
Confidence 678888 78888889998888888888888888 78888876 5788889998888888 688888
Q ss_pred HHhcCCCCcccccCCCCCcHHHHHHh----CCCCCHHHHHHHHHHC--------------------CCCCCCCCCCCCcH
Q 005175 78 ILLHSSADVNVSCGSDRTTALHCAAS----GGSANVVDVVRLLLSA--------------------GADPDCVDANGHHP 133 (710)
Q Consensus 78 LLe~~GADVN~~~d~~G~TPLH~Aa~----~G~~~~~eiVklLLe~--------------------GAd~n~~D~~G~TP 133 (710)
||+...++++.+ +..|+||||+|+. .|+ .+++++|++. |++++.+|..|.||
T Consensus 186 ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~---~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~ 261 (327)
T 1sw6_A 186 LLDYLYPCLILE-DSMNRTILHHIIITSGMTGC---SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261 (327)
T ss_dssp HHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred HHHhhhccccCC-CCCCCCHHHHHHHHcccccc---HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence 888734788888 8888889988888 788 8888888876 88888888888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhh----ccCCCcccc
Q 005175 134 IDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALK 209 (710)
Q Consensus 134 LhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~----l~d~n~~~~ 209 (710)
||+|+. ++.|++. +++.+|..|+||||+|+..|+.+++++ +++++.++.
T Consensus 262 L~~a~~------~~~Ll~~---------------------~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~ 314 (327)
T 1sw6_A 262 ILENLD------LKWIIAN---------------------MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314 (327)
T ss_dssp HHHHCS------HHHHHHH---------------------TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred hHHHHH------HHHHHHh---------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence 888885 4555552 356678889999999999999888544 457778888
Q ss_pred CCCCccccccccC
Q 005175 210 FNDVSFGTGAEKR 222 (710)
Q Consensus 210 ~g~TpLh~Aa~~g 222 (710)
.|.||||+|+..|
T Consensus 315 ~G~TpL~~A~~~g 327 (327)
T 1sw6_A 315 SGLRPVDFGAGLE 327 (327)
T ss_dssp TSCCGGGGTCC--
T ss_pred CCCCHHHHHHhcC
Confidence 8999999988754
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=3e-27 Score=231.23 Aligned_cols=166 Identities=20% Similarity=0.227 Sum_probs=150.5
Q ss_pred CCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 005175 3 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 82 (710)
Q Consensus 3 anin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 82 (710)
.+++..|.+|.||||+|+..|+.++|++||+ .|++++.. +..|.||||+|+..|+.+++++||+..
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 95 (201)
T 3hra_A 30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQ-------------NSISDSPYLYAGAQGRTEILAYMLKHA 95 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 4889999999999999999999999999999 89999887 588999999999999999999999665
Q ss_pred CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCCCCCCCcHHHHHhcCCC-----HHHHHHHHHHHHhC
Q 005175 83 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG-ADPDCVDANGHHPIDVIVLPPK-----LDSMRAILEEVFGS 156 (710)
Q Consensus 83 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G-Ad~n~~D~~G~TPLhlAa~~G~-----~eivk~LLe~Ll~~ 156 (710)
+++++.. +..|.||||+|+..|+ .+++++|+++| ++++.+|..|+||||+|+..++ .++++.| ++.
T Consensus 96 ~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~L----l~~ 167 (201)
T 3hra_A 96 TPDLNKH-NRYGGNALIPAAEKGH---IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL----MEN 167 (201)
T ss_dssp CCCTTCC-CTTSCCSHHHHHHTTC---HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHH----HHT
T ss_pred Ccccccc-cCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHH----HHC
Confidence 8899999 9999999999999999 99999999999 9999999999999999999887 5555554 445
Q ss_pred CCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCC
Q 005175 157 KNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 205 (710)
Q Consensus 157 ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n 205 (710)
|+ +++..|..|.||||+|+..|+.++++.|++.+
T Consensus 168 ga---------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 168 GA---------------DQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp TC---------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CC---------------CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 54 56678899999999999999999999988753
No 46
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=8e-28 Score=234.99 Aligned_cols=162 Identities=15% Similarity=0.147 Sum_probs=149.1
Q ss_pred CCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 005175 5 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 84 (710)
Q Consensus 5 in~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 84 (710)
++..|.+|.||||+||..|+.++|++|++ .+.+++.. +..|+||||+|+..|+.++|++||++ |+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~ 92 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDK-------------DIEGSTALIWAVKNNRLGIAEKLLSK-GS 92 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHH-hccccccc-------------cccCccHHHHHHHcCCHHHHHHHHHC-CC
Confidence 56789999999999999999999999999 67888876 57899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhh
Q 005175 85 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA 164 (710)
Q Consensus 85 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a 164 (710)
+++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 93 ~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga------ 158 (192)
T 2rfm_A 93 NVNTK-DFSGKTPLMWSIIFGY---SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE----LGA------ 158 (192)
T ss_dssp CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTC------
T ss_pred CCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCC------
Confidence 99999 9999999999999999 999999999999999999999999999999999888877765 343
Q ss_pred ccccccccccccCCCCCCCChhchhHhhCCCchhhhccCC
Q 005175 165 SGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS 204 (710)
Q Consensus 165 a~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~ 204 (710)
+++..|..|.||||+|+..|+.+++++|++.
T Consensus 159 ---------~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 159 ---------DISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp ---------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------CCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 5667789999999999999999999888753
No 47
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=1e-27 Score=248.95 Aligned_cols=181 Identities=17% Similarity=0.252 Sum_probs=159.5
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+||..|++++|++||+ .|++++.. |..|+||||+|+..|+.++|++||++
T Consensus 63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~tpL~~A~~~g~~~~v~~Ll~~ 128 (299)
T 1s70_B 63 GADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP-------------DNEGWIPLHAAASCGYLDIAEYLISQ 128 (299)
T ss_dssp CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 78899999999999999999999999999999 89999887 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCC--------------------------CCCCCCCCcHH
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-GADP--------------------------DCVDANGHHPI 134 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~--------------------------n~~D~~G~TPL 134 (710)
|++++.. +..|.||||+|+..++ .++++.|+.. |+++ ...+..|.|||
T Consensus 129 -g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L 203 (299)
T 1s70_B 129 -GAHVGAV-NSEGDTPLDIAEEEAM---EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL 203 (299)
T ss_dssp -TCCTTCC-CTTSCCHHHHCCSHHH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHH
T ss_pred -CCCCCCc-CCCCCCHHHHHHhcch---HHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHH
Confidence 9999999 9999999999999998 8888877653 4443 33678899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhh----ccCCCccccC
Q 005175 135 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKF 210 (710)
Q Consensus 135 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~----l~d~n~~~~~ 210 (710)
|+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..|+.++++. +++.+..+..
T Consensus 204 ~~A~~~g~~~~v~~Ll~----~g~---------------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~ 264 (299)
T 1s70_B 204 HVAAAKGYTEVLKLLIQ----ARY---------------DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264 (299)
T ss_dssp HHHHHHTCHHHHHHHHT----TTC---------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHCCcHHHHHHHHH----cCC---------------CCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCC
Confidence 99999999888776654 443 567789999999999999999998555 5577788999
Q ss_pred CCCccccccc
Q 005175 211 NDVSFGTGAE 220 (710)
Q Consensus 211 g~TpLh~Aa~ 220 (710)
|.||||+|.+
T Consensus 265 g~t~l~~A~~ 274 (299)
T 1s70_B 265 GQTAFDVADE 274 (299)
T ss_dssp SCCTTTSCCS
T ss_pred CCCHHHHHHH
Confidence 9999999965
No 48
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=4e-28 Score=246.64 Aligned_cols=185 Identities=18% Similarity=0.110 Sum_probs=160.6
Q ss_pred CCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 005175 7 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV 86 (710)
Q Consensus 7 ~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV 86 (710)
..+.++.|+||+||..|++++|++||+ .|+++|.. |..|+||||+||..|+.++|++||++ |+++
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~ 80 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQP-------------NEEGITALHNAICGANYSIVDFLITA-GANV 80 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCC
Confidence 446678899999999999999999999 78898886 58999999999999999999999999 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--hcCCCHHHHHHHHHHHHhCCCCchhh
Q 005175 87 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVI--VLPPKLDSMRAILEEVFGSKNSSVVV 163 (710)
Q Consensus 87 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlA--a~~G~~eivk~LLe~Ll~~ga~~~~~ 163 (710)
|.+ |..|+||||+|+..|+ .++|++||++|++++.++ .+|+||||+| +..|+.++++.|++...
T Consensus 81 n~~-d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga--------- 147 (229)
T 2vge_A 81 NSP-DSHGWTPLHCAASCND---TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ--------- 147 (229)
T ss_dssp TCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH---------
T ss_pred CCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC---------
Confidence 999 9999999999999999 999999999999999987 6999999999 99999999988888643
Q ss_pred hccccccccccccCCCCCCCChhchhHhhCCCch-hhhccC--CCccccCCCCccccccccCCCCCCCC
Q 005175 164 ASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS-PSRLVS--SPMALKFNDVSFGTGAEKREYPIDPS 229 (710)
Q Consensus 164 aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~ei-le~l~d--~n~~~~~g~TpLh~Aa~~g~~~i~~~ 229 (710)
+++..|..|.|||+.++.....++ ++.+.+ .+.++..|.||||+|+..|+.++++.
T Consensus 148 ----------~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 148 ----------SMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp ----------HTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred ----------CcccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 344456778899986665554444 566665 55678889999999999999887764
No 49
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=5.2e-27 Score=222.00 Aligned_cols=159 Identities=21% Similarity=0.267 Sum_probs=143.8
Q ss_pred CCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 005175 10 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS 89 (710)
Q Consensus 10 ~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~ 89 (710)
+...|+||.|+..|++++|++||+ .+.+++.. +..|+||||+|+. |+.++|++||++ |++++.+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~ 66 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-------------NGFGRTALQVMKL-GNPEIARRLLLR-GANPDLK 66 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-------------CTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCC
T ss_pred chHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-------------CccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCC
Confidence 457799999999999999999999 88888877 5889999999999 999999999999 9999999
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccc
Q 005175 90 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH 169 (710)
Q Consensus 90 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~ 169 (710)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++. +++
T Consensus 67 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~---------- 128 (162)
T 1ihb_A 67 -DRTGFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH----TAS---------- 128 (162)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----SCC----------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----cCC----------
Confidence 9999999999999999 9999999999999999999999999999999999888877764 321
Q ss_pred cccccccCCCCCCCChhchhHhhCCCchhhhccCCCc
Q 005175 170 NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 206 (710)
Q Consensus 170 ~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~ 206 (710)
.++..|..|.||||+|+..|+.+++++|++.++
T Consensus 129 ----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 129 ----NVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp ----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred ----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 246778999999999999999999999887663
No 50
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.94 E-value=1.5e-26 Score=229.97 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=155.1
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+|+..|+.+++++|++..+.+++.. +..|.||||+|+..|+.+++++|+++
T Consensus 48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~ 114 (223)
T 2f8y_A 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR-------------MHDGTTPLILAARLAVEGMLEDLINS 114 (223)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC-------------CCCCCcHHHHHHHhCcHHHHHHHHHc
Confidence 78899999999999999999999999999999655577776 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCch
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 161 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 161 (710)
|++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 115 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga--- 182 (223)
T 2f8y_A 115 -HADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD----HFA--- 182 (223)
T ss_dssp -TCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTC---
T ss_pred -CCCCcCc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH----cCC---
Confidence 9999999 9999999999999999 999999999999999999999999999999999888877766 343
Q ss_pred hhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCcc
Q 005175 162 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA 207 (710)
Q Consensus 162 ~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~ 207 (710)
+++..|..|.||||+|+..|+.+++++|++.++.
T Consensus 183 ------------~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 183 ------------NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp ------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred ------------CCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 4567788999999999999999999999887754
No 51
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=6.8e-27 Score=222.57 Aligned_cols=161 Identities=25% Similarity=0.327 Sum_probs=143.6
Q ss_pred CCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 005175 7 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV 86 (710)
Q Consensus 7 ~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV 86 (710)
+.+.+|.|+||.|+..|++++|+.||+..+.+++.. +..|.||||+|+..|+.++|++||++ |+++
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~ 68 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-------------EGRQSTPLHFAAGYNRVSVVEYLLQH-GADV 68 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-------------ccCCCCHHHHHHHcChHHHHHHHHhc-CCCC
Confidence 357889999999999999999999999777666655 57899999999999999999999999 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcc
Q 005175 87 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASG 166 (710)
Q Consensus 87 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~ 166 (710)
+.. +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++ .|+
T Consensus 69 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga-------- 132 (165)
T 3twr_A 69 HAK-DKGGLVPLHNACSYGH---YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ----HGA-------- 132 (165)
T ss_dssp TCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTC--------
T ss_pred Ccc-CCCCCCHHHHHHHcCc---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCC--------
Confidence 999 9999999999999999 999999999999999999999999999999999888877766 343
Q ss_pred ccccccccccCCCCCCCChhchhHhhCCCchhhhccCCC
Q 005175 167 AEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 205 (710)
Q Consensus 167 ~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n 205 (710)
+++.+|..|.||||+|+. |+.+++++|.+.+
T Consensus 133 -------~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 133 -------DPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp -------CTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred -------CCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 567789999999999877 8889999888765
No 52
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.4e-26 Score=222.23 Aligned_cols=159 Identities=22% Similarity=0.319 Sum_probs=144.7
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 88 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 88 (710)
...+.|+|++||..|++++|++||+ .|++++.. +..|.||||+|+..|+.++|++||++ |++++.
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~ 75 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMA-NGADVNAE-------------DASGWTPLHLAAFNGHLEIVEVLLKN-GADVNA 75 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred CCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 4567899999999999999999999 78999876 58999999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcccc
Q 005175 89 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 168 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~ 168 (710)
. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++ .|+
T Consensus 76 ~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~---------- 137 (169)
T 2y1l_E 76 V-DHAGMTPLRLAALFGH---LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK----NGA---------- 137 (169)
T ss_dssp C-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC----------
T ss_pred c-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC----------
Confidence 9 9999999999999999 999999999999999999999999999999999888877766 343
Q ss_pred ccccccccCCCCCCCChhchhHhhCCCchhhhccCCC
Q 005175 169 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 205 (710)
Q Consensus 169 ~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n 205 (710)
+++..|..|.||||+|+..|+.+++++|++.+
T Consensus 138 -----~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 138 -----DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp -----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred -----CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 46677899999999999999999999887653
No 53
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.94 E-value=3.2e-27 Score=240.73 Aligned_cols=185 Identities=17% Similarity=0.145 Sum_probs=151.4
Q ss_pred CCCCCC----CCCCChhHHHHHHHc---CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHH
Q 005175 2 NNNSTA----ETEDSFTSMLELASN---NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDV 74 (710)
Q Consensus 2 Ganin~----~d~dG~TpLh~AA~~---Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~ev 74 (710)
|++++. .|.+|.||||+||.. |+.++|++||+ .|++++....... ....+.|..|.||||+||..|+.++
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~~--~~~~~~d~~g~t~L~~A~~~g~~~~ 105 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLVN--AQCTDEFYQGHSALHIAIEKRSLQC 105 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGGG--CCCCSTTTTTCCHHHHHHHTTCHHH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhcc--cccccccccCCCHHHHHHHcCCHHH
Confidence 678887 899999999999999 99999999999 6666654321111 1122335789999999999999999
Q ss_pred HHHHHhcCCCCcccccCCC-------------CCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCcHHHHHh
Q 005175 75 LKLILLHSSADVNVSCGSD-------------RTTALHCAASGGSANVVDVVRLLLS---AGADPDCVDANGHHPIDVIV 138 (710)
Q Consensus 75 VklLLe~~GADVN~~~d~~-------------G~TPLH~Aa~~G~~~~~eiVklLLe---~GAd~n~~D~~G~TPLhlAa 138 (710)
|++||++ |+++|.. +.. |.||||+|+..|+ .++|++||+ +|++++.+|..|+||||+|+
T Consensus 106 v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~ 180 (256)
T 2etb_A 106 VKLLVEN-GADVHLR-ACGRFFQKHQGTCFYFGELPLSLAACTKQ---WDVVTYLLENPHQPASLEATDSLGNTVLHALV 180 (256)
T ss_dssp HHHHHHT-TCCTTCC-CCSGGGSCCSSSCCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHc-CCCCCcc-cccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCcCccCCCCCCHHHHHH
Confidence 9999999 9999998 665 9999999999999 999999999 99999999999999999999
Q ss_pred c--CCCHH-------HHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCc
Q 005175 139 L--PPKLD-------SMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 206 (710)
Q Consensus 139 ~--~G~~e-------ivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~ 206 (710)
. .++.+ +++.|++........ ...++..|..|.||||+|+..|+.++++.|++.+.
T Consensus 181 ~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 181 MIADNSPENSALVIHMYDGLLQMGARLCPT------------VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHHHSTT------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccCCchhhHHHHHHHHHHHHcCCCcccc------------cccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 8 78877 666555543222100 00127789999999999999999999999887653
No 54
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=9.2e-27 Score=226.54 Aligned_cols=132 Identities=33% Similarity=0.443 Sum_probs=125.2
Q ss_pred CCCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005175 1 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 80 (710)
Q Consensus 1 ~Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 80 (710)
.|+|+|..|.+|.||||+|+..++.++++.||+ .|++++.. |.+|+||||+||..|+.++|++||+
T Consensus 26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~ 91 (169)
T 4gpm_A 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAK-------------DSDGRTPLHHAAENGHKEVVKLLIS 91 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhh-------------ccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 389999999999999999999999999999999 89999887 5899999999999999999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 005175 81 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 151 (710)
Q Consensus 81 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 151 (710)
+ |+|||.+ |.+|+||||+|+..|+ .++|++||++|+|++.+|.+|+||||+|+..|+.++++.|++
T Consensus 92 ~-gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 92 K-GADVNAK-DSDGRTPLHHAAENGH---KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp T-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred C-cCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9 9999999 9999999999999999 999999999999999999999999999999999877765544
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=2.2e-28 Score=249.54 Aligned_cols=200 Identities=15% Similarity=0.091 Sum_probs=164.6
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHh---cCCCCccccccccccccCCcccCCCCChHHHHHH---HcCCHHHHHHHHhcC
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLE---RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAA---TYGSVDVLKLILLHS 82 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe---~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA---~~G~~evVklLLe~~ 82 (710)
+..+.|+||.||+.|+++.|+.||+ ..+.+++... ...|..|+||||+|+ ..|+.++|++||+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~- 71 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE---------FREPSTGKTCLPKALLNLSAGRNDTIPILLDI- 71 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh---------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-
Confidence 4678999999999999997666666 3777887652 112467999999999 67999999999998
Q ss_pred CCC-----------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHH
Q 005175 83 SAD-----------VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD--------------ANGHHPIDVI 137 (710)
Q Consensus 83 GAD-----------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D--------------~~G~TPLhlA 137 (710)
|++ ++.. +..|+||||+|+..|+ .++|++||++|++++..| ..|+||||+|
T Consensus 72 g~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A 147 (260)
T 3jxi_A 72 AEKTGNMREFINSPFRDV-YYRGQTALHIAIERRC---KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147 (260)
T ss_dssp HHHTTCHHHHHTCCBCCS-SEESBCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHH
T ss_pred cccccchHhhhccccccc-ccCCCCHHHHHHHcCC---HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHH
Confidence 754 3333 5589999999999999 999999999999999999 6899999999
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCC---------Cchhhhcc----CC
Q 005175 138 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS---------PPSPSRLV----SS 204 (710)
Q Consensus 138 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~---------~eile~l~----d~ 204 (710)
+..|+.++++.|++.. ..|+ +++.+|..|+||||+|+..++ .++++.|+ ++
T Consensus 148 ~~~g~~~~v~~Ll~~~-~~ga---------------~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 148 ACTNQPHIVHYLTENG-HKQA---------------DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp HHTTCHHHHHHHHHCS-SCCC---------------CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcc-ccCC---------------CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 9999988887666510 0333 677889999999999999888 46655554 44
Q ss_pred -------CccccCCCCccccccccCCCCCCCCCCccccccc
Q 005175 205 -------PMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY 238 (710)
Q Consensus 205 -------n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~ 238 (710)
+..+..|.||||+|+..|+.++++.|++.+....
T Consensus 212 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 212 FPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 5688999999999999999999999988876543
No 56
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=8.4e-27 Score=222.35 Aligned_cols=157 Identities=26% Similarity=0.316 Sum_probs=144.3
Q ss_pred CChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 005175 11 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC 90 (710)
Q Consensus 11 dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~ 90 (710)
+|.||||+||..|++++|++||+ .+.+++.. |..|.||||+|+..|+.++|++||++ |++++..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~- 65 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE-QENVINHT-------------DEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLL- 65 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCcchHHHHHHCCCHHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCc-
Confidence 58899999999999999999999 67888876 58999999999999999999999999 9999999
Q ss_pred CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcccccc
Q 005175 91 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHN 170 (710)
Q Consensus 91 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~ 170 (710)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~------------ 126 (167)
T 3v31_A 66 GKGRESALSLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE----SGA------------ 126 (167)
T ss_dssp CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC------------
T ss_pred CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC------------
Confidence 9999999999999999 999999999999999999999999999999999888877766 343
Q ss_pred ccccccCCCCCCCChhchhHhhCCCchhhhccCCC
Q 005175 171 LTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 205 (710)
Q Consensus 171 l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n 205 (710)
+++..|..|.||||+|+..|+.++++.+++..
T Consensus 127 ---~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 127 ---DPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp ---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 45667899999999999999999988887654
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=1.1e-26 Score=222.74 Aligned_cols=157 Identities=24% Similarity=0.348 Sum_probs=140.6
Q ss_pred ChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 005175 12 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG 91 (710)
Q Consensus 12 G~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d 91 (710)
+.||||+||..|++++|+.||+..+..++.. +..|+||||+||..|+.++|++||++ |++++.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~ 66 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-------------DERGFTPLIWASAFGEIETVRFLLEW-GADPHIL-A 66 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-C
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhh-c
Confidence 5689999999999999999999554446665 58999999999999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccc
Q 005175 92 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL 171 (710)
Q Consensus 92 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l 171 (710)
..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++ .|+
T Consensus 67 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga------------- 126 (172)
T 3v30_A 67 KERESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA----RGA------------- 126 (172)
T ss_dssp TTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-------------
T ss_pred ccCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC-------------
Confidence 999999999999999 999999999999999999999999999999999888877766 343
Q ss_pred cccccCCCCCCCChhchhHhhCCCchhhhccCCC
Q 005175 172 TVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 205 (710)
Q Consensus 172 ~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n 205 (710)
+++..|..|.||||+|+..|+.++++.+++.+
T Consensus 127 --~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 127 --DLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp --CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred --CccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 56678899999999999999999987776554
No 58
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.94 E-value=4.8e-27 Score=242.02 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=145.0
Q ss_pred CCCCCChhHHHHHHHc---CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 005175 7 AETEDSFTSMLELASN---NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS 83 (710)
Q Consensus 7 ~~d~dG~TpLh~AA~~---Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G 83 (710)
..|.+|.||||+||.. |+.++|++||+ .|++++....... ......|..|+||||+||..|+.++|++||++ |
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~-~ga~~~~~~~~i~--~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g 124 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLD-VARKTDSLKQFVN--ASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-G 124 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHH-HHHHTTCHHHHHT--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHH-hhccccchhHHhh--cccccccCCCCCHHHHHHHcCCHHHHHHHHHC-C
Confidence 4588999999999987 99999999999 5554332110000 11222357899999999999999999999999 9
Q ss_pred CCcccccCC--------------CCCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCcHHHHHhcCCC----
Q 005175 84 ADVNVSCGS--------------DRTTALHCAASGGSANVVDVVRLLLS---AGADPDCVDANGHHPIDVIVLPPK---- 142 (710)
Q Consensus 84 ADVN~~~d~--------------~G~TPLH~Aa~~G~~~~~eiVklLLe---~GAd~n~~D~~G~TPLhlAa~~G~---- 142 (710)
+++|.. +. .|.||||+|+..|+ .++|++||+ +|++++.+|.+|+||||+|+..|+
T Consensus 125 a~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~ 200 (273)
T 2pnn_A 125 ADVQAA-ANGDFFKKTKGRPGFYFGELPLSLAACTNQ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200 (273)
T ss_dssp CCTTCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred CCcCcc-ccccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchh
Confidence 999998 65 79999999999999 999999999 999999999999999999999777
Q ss_pred -----HHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCccccC
Q 005175 143 -----LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKF 210 (710)
Q Consensus 143 -----~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~~~ 210 (710)
.++++.|++........ ...++..|..|.||||+|+..|+.+++++|++.++.+..
T Consensus 201 ~~~~~~~~v~~Ll~~ga~~n~~------------~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~ 261 (273)
T 2pnn_A 201 NTKFVTSMYNEILILGAKLHPT------------LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE 261 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHhhhhcccc------------cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence 45555555543222210 002346789999999999999999999999888876544
No 59
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.6e-26 Score=217.54 Aligned_cols=153 Identities=24% Similarity=0.314 Sum_probs=140.9
Q ss_pred ChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 005175 12 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG 91 (710)
Q Consensus 12 G~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d 91 (710)
+.|+||.||..|++++|+.||+..+.+++.. +..|+||||+ |..|+.+++++||++ |+++|.+ +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~-~ 65 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-------------NRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQ-D 65 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-------------CTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCC-C
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-------------CCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCc-C
Confidence 5799999999999999999999655677776 5889999999 999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccc
Q 005175 92 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL 171 (710)
Q Consensus 92 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l 171 (710)
..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++. +
T Consensus 66 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~------------- 124 (156)
T 1bd8_A 66 TSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-----S------------- 124 (156)
T ss_dssp TTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----S-------------
T ss_pred CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----c-------------
Confidence 999999999999999 9999999999999999999999999999999999988877662 1
Q ss_pred cccccCCCCCCCChhchhHhhCCCchhhhccC
Q 005175 172 TVSIGSSNSDYSSPLLTASASGSPPSPSRLVS 203 (710)
Q Consensus 172 ~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d 203 (710)
+++..|..|.||||+|+..|+.++++.+++
T Consensus 125 --~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 125 --DLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp --CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred --CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 566788999999999999999999998875
No 60
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=2.6e-26 Score=216.38 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=138.3
Q ss_pred CChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 005175 11 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC 90 (710)
Q Consensus 11 dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~ 90 (710)
|..|+||.|+..|++++|++|++ .|.+++. +..|.||||+|+..|+.+++++||++ |++++..
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~- 63 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMA-NGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR- 63 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH-HTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-
T ss_pred CccHHHHHHHHcCCHHHHHHHHH-cCCCCCc--------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-
Confidence 35699999999999999999999 6666653 47899999999999999999999999 9999999
Q ss_pred CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcccccc
Q 005175 91 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHN 170 (710)
Q Consensus 91 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~ 170 (710)
+..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++ .|+
T Consensus 64 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga------------ 124 (153)
T 1awc_B 64 TKVDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK----YGA------------ 124 (153)
T ss_dssp CTTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC------------
T ss_pred CCCCCCHHHHHHHcCh---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC------------
Confidence 9999999999999999 999999999999999999999999999999999888877666 343
Q ss_pred ccccccCCCCCCCChhchhHhhCCCchhhhc
Q 005175 171 LTVSIGSSNSDYSSPLLTASASGSPPSPSRL 201 (710)
Q Consensus 171 l~~~in~~d~~G~TPLH~Aa~~G~~eile~l 201 (710)
+++..|..|.||||+|+..|+.+++++|
T Consensus 125 ---~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 125 ---DVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp ---CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ---CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 5667889999999999999999998765
No 61
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=1e-26 Score=237.18 Aligned_cols=187 Identities=17% Similarity=0.128 Sum_probs=145.6
Q ss_pred CCCCCCCC----CCChhHHHHHH---HcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHH
Q 005175 2 NNNSTAET----EDSFTSMLELA---SNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDV 74 (710)
Q Consensus 2 Ganin~~d----~dG~TpLh~AA---~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~ev 74 (710)
|++++..+ .+|.||||+|+ ..|+.++|++||+ .+++.+...-+ ........|..|+||||+||..|+.++
T Consensus 32 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~ 108 (260)
T 3jxi_A 32 KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD-IAEKTGNMREF--INSPFRDVYYRGQTALHIAIERRCKHY 108 (260)
T ss_dssp TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH-HHHHTTCHHHH--HTCCBCCSSEESBCHHHHHHHTTCHHH
T ss_pred CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH-hcccccchHhh--hcccccccccCCCCHHHHHHHcCCHHH
Confidence 45666555 77999999999 6799999999999 45443221100 001122235689999999999999999
Q ss_pred HHHHHhcCCCCcccccC--------------CCCCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCcHHHHH
Q 005175 75 LKLILLHSSADVNVSCG--------------SDRTTALHCAASGGSANVVDVVRLLLS---AGADPDCVDANGHHPIDVI 137 (710)
Q Consensus 75 VklLLe~~GADVN~~~d--------------~~G~TPLH~Aa~~G~~~~~eiVklLLe---~GAd~n~~D~~G~TPLhlA 137 (710)
|++||++ |+++|.. + ..|.||||+|+..|+ .++|++||+ +|++++.+|..|+||||+|
T Consensus 109 v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A 183 (260)
T 3jxi_A 109 VELLVEK-GADVHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQ---PHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183 (260)
T ss_dssp HHHHHHT-TCCTTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHH
T ss_pred HHHHHhC-CCCcCcc-ccccccCcccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCCcccCCCCCcHHHHH
Confidence 9999999 9999998 6 689999999999999 999999999 9999999999999999999
Q ss_pred hcCCC---------HHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCccc
Q 005175 138 VLPPK---------LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL 208 (710)
Q Consensus 138 a~~G~---------~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~ 208 (710)
+..++ .++++.|++........ ...++..|..|.||||+|+..|+.+++++|++.+...
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 184 VAIADNTRENTKFVTKMYDLLLIKCAKLFPD------------TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCchhHHHHHHHHHHHHHHhCcccccc------------cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 97666 34444444432222110 0123678999999999999999999999998776443
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=2.4e-26 Score=222.26 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=143.0
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 88 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 88 (710)
+.++.++||.||..|++++|++||+..+.+++.. +..|+||||+||..|+.++|++||++ |+++|.
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~ 67 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-------------DDHGFSPLHWACREGRSAVVEMLIMR-GARINV 67 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCC
Confidence 3568899999999999999999999778888876 58999999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcccc
Q 005175 89 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 168 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~ 168 (710)
. +..|.||||+|+..|+ .++|++||++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 68 ~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga---------- 129 (179)
T 3f6q_A 68 M-NRGDDTPLHLAASHGH---RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA----NGA---------- 129 (179)
T ss_dssp C-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC----------
T ss_pred c-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH----CCC----------
Confidence 9 9999999999999999 999999999999999999999999999999999888877665 443
Q ss_pred ccccccccCCCCCCCChhchhHhhCCCchhhhccCCCc
Q 005175 169 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 206 (710)
Q Consensus 169 ~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~ 206 (710)
+++..|..|.||||+|+..++.++++++++.++
T Consensus 130 -----~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 130 -----LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp -----CSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred -----CcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 566789999999999999999999777776553
No 63
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.93 E-value=3.8e-28 Score=258.98 Aligned_cols=221 Identities=12% Similarity=0.052 Sum_probs=175.1
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCc----ccCCCCChHHHHHHHcCCHHHHHH
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSK----QMVSEHRTPLMVAATYGSVDVLKL 77 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~----~~d~~G~TPLH~AA~~G~~evVkl 77 (710)
|++++..+..|.|+++ |++++|+.||+ .|++.+...++++...... .......+.+|+|+..+..+++++
T Consensus 42 ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~-~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 115 (327)
T 1sw6_A 42 PLKIMKALPSPVVNDN-----EQKMKLEAFLQ-RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 115 (327)
T ss_dssp SCCCEECBCCCCCCCH-----HHHHHHHHHHH-HHHC-------------------------------CHHHHHHHHHHH
T ss_pred CcccccCCCCCCcccC-----chhHHHHHHHH-hccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHH
Confidence 7889999999999987 99999999999 7777776555444332100 011222344689999999999999
Q ss_pred HHhcCCCCccc-ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC---HHHHHHHHHHH
Q 005175 78 ILLHSSADVNV-SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK---LDSMRAILEEV 153 (710)
Q Consensus 78 LLe~~GADVN~-~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~---~eivk~LLe~L 153 (710)
|++. |+++|. . +.+|+||||+||..|+ .++|++||++|++++.+|.+|+||||+|+..|+ .++++.|++.+
T Consensus 116 l~~~-g~dvn~~~-d~~g~TpLh~Aa~~g~---~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~ 190 (327)
T 1sw6_A 116 FPNT-QLNLNIPV-DEHGNTPLHWLTSIAN---LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190 (327)
T ss_dssp CTTS-CCCSCSCC-STTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH
T ss_pred HHhc-CCCccccc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhh
Confidence 9998 999999 6 9999999999999999 999999999999999999999999999999988 67888888865
Q ss_pred HhCCCCchhhhccccccccccccCCCCCCCChhchhHh----hCCCchhhhcc---------------------------
Q 005175 154 FGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASA----SGSPPSPSRLV--------------------------- 202 (710)
Q Consensus 154 l~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~----~G~~eile~l~--------------------------- 202 (710)
.. +++..|..|+||||+|+. .|+.++++.++
T Consensus 191 ~~------------------~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~ 252 (327)
T 1sw6_A 191 YP------------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252 (327)
T ss_dssp GG------------------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred hc------------------cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc
Confidence 31 355668888999999888 77888766664
Q ss_pred ----------------------CCCccccCCCCccccccccCCCCCCCCCCcccccccccccccccccccc
Q 005175 203 ----------------------SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 251 (710)
Q Consensus 203 ----------------------d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~De~g~~~f~v~ 251 (710)
+++.++..|.||||+|+..++.++++.|++.|++++..|..|.++++++
T Consensus 253 ~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp -------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred cccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 5778899999999999999999999999999999999999999999887
No 64
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.93 E-value=5.9e-27 Score=244.83 Aligned_cols=195 Identities=15% Similarity=0.060 Sum_probs=168.7
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++.. +|.||||+||..|+.++|++||+ .|++++.. +..|+||||+|+..|+.++|++||++
T Consensus 54 g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 54 GALKNLL--ENEFPLHQAATLEDTKIVKILLF-SGLDDSQF-------------DDKGNTALYYAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 5666665 59999999999999999999999 89999887 58999999999999999999999999
Q ss_pred CCCCcccccCCCC-CcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCc
Q 005175 82 SSADVNVSCGSDR-TTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSS 160 (710)
Q Consensus 82 ~GADVN~~~d~~G-~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~ 160 (710)
|++++.. +..| .||||+|+..|+ .+++++|+++|+++... ..|.||||+|+..|+.++++.|++...
T Consensus 118 -ga~~~~~-~~~g~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga------ 185 (285)
T 3kea_A 118 -NWRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMT------ 185 (285)
T ss_dssp -CGGGGGC-SSSGGGSHHHHHHHTTC---HHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred -CCCCCcc-CCCCCCCHHHHHHHcCC---HHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCC------
Confidence 9999999 8888 799999999999 99999999999987333 289999999999999999998888532
Q ss_pred hhhhccccccccccccCCCCCCCCh-hchhHhhCCCchhhhccCCCccccCCCCccccccccCCCCCCCCCCcccccccc
Q 005175 161 VVVASGAEHNLTVSIGSSNSDYSSP-LLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYA 239 (710)
Q Consensus 161 ~~~aa~~~~~l~~~in~~d~~G~TP-LH~Aa~~G~~eile~l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~ 239 (710)
+++..|..|.|| ||+|+..|+.+++++|++.++.....+ +.|+..++.++++.|++.|.++..
T Consensus 186 -------------d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~---~~a~~~~~~~iv~~Ll~~g~~~~~ 249 (285)
T 3kea_A 186 -------------STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN---LENVLLDDAEIAKMIIEKHVEYKS 249 (285)
T ss_dssp -------------HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT---GGGGTTTCHHHHHHHHHHHHHHTT
T ss_pred -------------CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC---hhhhhcCCHHHHHHHHHcCCCCCC
Confidence 556778899998 999999999999888887765443332 467888899999999988877654
Q ss_pred c
Q 005175 240 T 240 (710)
Q Consensus 240 ~ 240 (710)
.
T Consensus 250 ~ 250 (285)
T 3kea_A 250 D 250 (285)
T ss_dssp C
T ss_pred c
Confidence 3
No 65
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=2e-26 Score=234.22 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=122.7
Q ss_pred CCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 005175 10 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS 89 (710)
Q Consensus 10 ~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~ 89 (710)
..|.||||.|+..|+.++++.||+ .|++++.. ..|.||||+|+..|+.++|++||+. |+++|.+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~--------------~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~ 66 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN--------------PLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP 66 (239)
T ss_dssp -------------------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCC
T ss_pred ccccccCchhhhhhhHHHHHHHhc-cCCCcccC--------------chhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCc
Confidence 468999999999999999999999 88888864 5789999999999999999999999 9999999
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccc
Q 005175 90 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH 169 (710)
Q Consensus 90 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~ 169 (710)
|..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+..|+.++++.|++ .|+
T Consensus 67 -d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~ga----------- 127 (239)
T 1ycs_B 67 -NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE----SGA----------- 127 (239)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTC-----------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH----cCC-----------
Confidence 9999999999999999 999999999999999999999999999999999888877666 443
Q ss_pred cccccccCCCCCCC-Chhchh--HhhCCCchhhhccCC----Ccc---------ccCCCCccccccccCC
Q 005175 170 NLTVSIGSSNSDYS-SPLLTA--SASGSPPSPSRLVSS----PMA---------LKFNDVSFGTGAEKRE 223 (710)
Q Consensus 170 ~l~~~in~~d~~G~-TPLH~A--a~~G~~eile~l~d~----n~~---------~~~g~TpLh~Aa~~g~ 223 (710)
+++..+..|. ||||+| +..|+.+++++|++. +.. +..+.++++++..+|.
T Consensus 128 ----~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 128 ----AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp ----CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred ----CcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 4566677766 999999 888999997777643 332 5557777787777775
No 66
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=6.3e-26 Score=236.14 Aligned_cols=163 Identities=21% Similarity=0.235 Sum_probs=146.1
Q ss_pred CCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCC-CccccccccccccCCcccCCCCChHHHHHH-----HcCCHHHHHHH
Q 005175 5 STAETEDSFTSMLELASNNDVEGFKRMLERDPS-SVDEVGLWYGRVNGSKQMVSEHRTPLMVAA-----TYGSVDVLKLI 78 (710)
Q Consensus 5 in~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~ga-dVn~~~L~~a~~~g~~~~d~~G~TPLH~AA-----~~G~~evVklL 78 (710)
+|..|.+|.||||+||..|+.++|++||+ .|+ +++.. +..|.||||+|+ ..++.+++++|
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~~g~tpL~~a~~~~~~~~~~~~~v~~L 169 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLD-SGVCKVDKQ-------------NRAGYSPIMLTALATLKTQDDIETVLQL 169 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TSCCCTTCC-------------CTTSCCHHHHGGGCCCCSHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCCCC-------------CCCCCCHHHHHHHHHhhhhhhHHHHHHH
Confidence 68899999999999999999999999999 555 88876 589999999999 67889999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 005175 79 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN 158 (710)
Q Consensus 79 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga 158 (710)
++. |++++.. +..|+||||+|+..|+ .++|++||++|+|++.+|.+|+||||+|+..|+.++++.|++ ..|+
T Consensus 170 l~~-g~~~~~~-~~~g~tpLh~A~~~g~---~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~---~~ga 241 (276)
T 4hbd_A 170 FRL-GNINAKA-SQAGQTALMLAVSHGR---VDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA---VPSC 241 (276)
T ss_dssp HHH-SCTTCCC-TTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT---STTC
T ss_pred HHc-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh---cCCC
Confidence 999 8988888 8899999999999999 999999999999999999999999999999999888776654 1343
Q ss_pred CchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCC
Q 005175 159 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS 204 (710)
Q Consensus 159 ~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~ 204 (710)
+++..|..|.||||+|+..|+.+++++|++.
T Consensus 242 ---------------d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 242 ---------------DISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp ---------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 5677899999999999999999999988753
No 67
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.8e-25 Score=207.12 Aligned_cols=132 Identities=27% Similarity=0.328 Sum_probs=125.4
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
+++++..+.+|.||||+|+..|++++|++||+ .|++++.. +..|+||||+|+. |+.++|++||++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~ 66 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNAL-------------NRFGRRPIQVMMM-GSAQVAELLLLH 66 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCTTTTTSTT-SCHHHHHHHHHH
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCc-------------CCCCCCHHHHHHc-CCHHHHHHHHHC
Confidence 57899999999999999999999999999999 78999887 5899999999999 999999999999
Q ss_pred CCCCcccccCCC-CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 005175 82 SSADVNVSCGSD-RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV 153 (710)
Q Consensus 82 ~GADVN~~~d~~-G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L 153 (710)
|+++|.+ +.. |+||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++..
T Consensus 67 -g~~~~~~-~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 67 -GAEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp -TCCSSCC-BTTTTBCHHHHHHHHTC---HHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred -CCCCCCc-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999 888 9999999999999 99999999999999999999999999999999999998888753
No 68
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.91 E-value=4.2e-26 Score=237.51 Aligned_cols=184 Identities=14% Similarity=0.157 Sum_probs=160.5
Q ss_pred ChhHHHHHHHcCCHHHHHHHHhcCCCC--ccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC-Cccc
Q 005175 12 SFTSMLELASNNDVEGFKRMLERDPSS--VDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA-DVNV 88 (710)
Q Consensus 12 G~TpLh~AA~~Gdle~Vk~LLe~~gad--Vn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA-DVN~ 88 (710)
..+++|.|+..|+++.++.+++ .+.+ +|.. |.+|+||||+||..|+.++|++||+. |+ +++.
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~n~~-------------d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~ 140 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSA-RLLDYVVNIA-------------DSNGNTALHYSVSHANFPVVQQLLDS-GVCKVDK 140 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCH-HHHHHHHTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-SCCCTTC
T ss_pred hccCCCHHHHHHHHHHHHHHHH-HHHhhcCcCC-------------CCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCCC
Confidence 3567889999999999999988 3333 5554 68999999999999999999999999 87 9999
Q ss_pred ccCCCCCcHHHHHH-----hCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhh
Q 005175 89 SCGSDRTTALHCAA-----SGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVV 163 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa-----~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~ 163 (710)
. +..|.||||+|+ ..++ .+++++|++.|++++..|..|+||||+|+..|+.++++.|++ .|+
T Consensus 141 ~-~~~g~tpL~~a~~~~~~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~----~ga----- 207 (276)
T 4hbd_A 141 Q-NRAGYSPIMLTALATLKTQDD---IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLA----CEA----- 207 (276)
T ss_dssp C-CTTSCCHHHHGGGCCCCSHHH---HHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH----TTC-----
T ss_pred C-CCCCCCHHHHHHHHHhhhhhh---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh----CCC-----
Confidence 9 999999999999 4566 999999999999999999999999999999999888877665 443
Q ss_pred hccccccccccccCCCCCCCChhchhHhhCCCchhhhcc-----CCCccccCCCCccccccccCCCCCCCCCCcc
Q 005175 164 ASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKREYPIDPSLPDI 233 (710)
Q Consensus 164 aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~-----d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ 233 (710)
+++.+|..|.||||+|+..|+.+++++|+ +.+..+..|.||||+|+..++.++++.|++.
T Consensus 208 ----------d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 208 ----------DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp ----------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 56778999999999999999999976655 5568899999999999999999888777654
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.91 E-value=5.7e-24 Score=203.94 Aligned_cols=131 Identities=27% Similarity=0.400 Sum_probs=125.3
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+|+..|++++|++||+ .|++++.. +..|.||||+|+..|+.+++++||++
T Consensus 37 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~ 102 (169)
T 2y1l_E 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAV-------------DHAGMTPLRLAALFGHLEIVEVLLKN 102 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 78899999999999999999999999999999 78888876 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 151 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 151 (710)
|++++.. +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++
T Consensus 103 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 103 -GADVNAN-DMEGHTPLHLAAMFGH---LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 9999999 9999999999999999 999999999999999999999999999999999998887765
No 70
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.91 E-value=1e-23 Score=200.87 Aligned_cols=135 Identities=23% Similarity=0.322 Sum_probs=128.2
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+|+..|+.++|++|++ .|++++.. +..|.||||+|+..|+.+++++||++
T Consensus 26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 91 (167)
T 3v31_A 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-------------GKGRESALSLACSKGYTDIVKMLLDC 91 (167)
T ss_dssp SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 57889999999999999999999999999999 78998876 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHh
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG 155 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~ 155 (710)
|+++|.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.+.+
T Consensus 92 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 92 -GVDVNEY-DWNGGTPLLYAVHGNH---VKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 9999999 9999999999999999 9999999999999999999999999999999999999999987554
No 71
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=3.3e-24 Score=217.79 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=136.4
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++. +..|.||||.|+..|++++|++||+ .|+++|.. |..|+||||+||..|+.++|++||++
T Consensus 28 g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~ 92 (239)
T 1ycs_B 28 GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLP-------------NDEGITALHNAVCAGHTEIVKFLVQF 92 (239)
T ss_dssp ----------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCccc-CchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 566765 4789999999999999999999999 78899887 58999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCC-cHHHHH--hcCCCHHHHHHHHHHHHhCCC
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH-HPIDVI--VLPPKLDSMRAILEEVFGSKN 158 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~-TPLhlA--a~~G~~eivk~LLe~Ll~~ga 158 (710)
|+++|.+ |..|+||||+|+..|+ .++|++||++|++++.+|..|. ||||+| +..|+.++++.|++.....+.
T Consensus 93 -ga~~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 93 -GVNVNAA-DSDGWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167 (239)
T ss_dssp -TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred -CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence 9999999 9999999999999999 9999999999999999998887 999999 788999999999987665542
Q ss_pred CchhhhccccccccccccCCCCCCCChhchhHhhCC
Q 005175 159 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS 194 (710)
Q Consensus 159 ~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~ 194 (710)
... .......+..+.++++++...|.
T Consensus 168 ~~~----------~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 168 MNK----------GVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp TGG----------GEEEESSCBCCSSTTBCCBCSSC
T ss_pred ccc----------ceEEEEeccCCCCCCcccccCCC
Confidence 100 11223347788999999998886
No 72
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=6e-25 Score=216.86 Aligned_cols=162 Identities=13% Similarity=0.112 Sum_probs=138.1
Q ss_pred ChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH----HHHHHHHhcCCCCcc
Q 005175 12 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV----DVLKLILLHSSADVN 87 (710)
Q Consensus 12 G~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~----evVklLLe~~GADVN 87 (710)
++++|+.||+.|+++.|+.+++. + ++... +..|+||||+|+..|+. ++|++||++ |+|||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~-~--~~~~~------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn 69 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK-G--YEDKE------------SVLKSNILYDVLRNNNDEARYKISMFLINK-GADIK 69 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH-S--SSCHH------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSS
T ss_pred cccHHHHHHHcCCHHHHHHHHhc-C--ccccc------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCC
Confidence 56889999999999999999984 3 33331 25799999999999985 599999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCH---HHHHHHHHHCCCCCCCCCCCCC-cHHHHHhcCCCH-HHHHHHHHHHHh-CCCCch
Q 005175 88 VSCGSDRTTALHCAASGGSANV---VDVVRLLLSAGADPDCVDANGH-HPIDVIVLPPKL-DSMRAILEEVFG-SKNSSV 161 (710)
Q Consensus 88 ~~~d~~G~TPLH~Aa~~G~~~~---~eiVklLLe~GAd~n~~D~~G~-TPLhlAa~~G~~-eivk~LLe~Ll~-~ga~~~ 161 (710)
.+ +.+|+||||+|+..|+.+. .++|++||++|||+|.+|..|+ ||||+|+..+.. .....++++|+. .|+
T Consensus 70 ~~-d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga--- 145 (186)
T 3t8k_A 70 SR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL--- 145 (186)
T ss_dssp CC-CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC---
T ss_pred CC-CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC---
Confidence 99 9999999999999987432 5889999999999999999999 999999996654 234457778887 775
Q ss_pred hhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCC
Q 005175 162 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 205 (710)
Q Consensus 162 ~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n 205 (710)
+++..|..|.||||+|+..|+.++++++.+..
T Consensus 146 ------------d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 146 ------------QLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp ------------CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred ------------CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 67888999999999999999999988887543
No 73
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.5e-24 Score=205.58 Aligned_cols=147 Identities=27% Similarity=0.293 Sum_probs=115.8
Q ss_pred CCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 005175 4 NSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS 83 (710)
Q Consensus 4 nin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G 83 (710)
..+..+..|.||||+||..|++++|++||+ .|++++.. +..|+||||+|+ .|+.++|++||++ |
T Consensus 4 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~-~~~~~~v~~Ll~~-g 67 (156)
T 1bi7_B 4 AAGSSMEPSADWLATAAARGRVEEVRALLE-AGANPNAP-------------NSYGRRPIQVMM-MGSARVAELLLLH-G 67 (156)
T ss_dssp ------CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CSSSCCTTTSSC-TTCHHHHHHHHTT-T
T ss_pred CccCCCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHH-cCCHHHHHHHHHc-C
Confidence 456678899999999999999999999999 78999887 589999999985 9999999999999 9
Q ss_pred CCcccccCCCCCc-HHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchh
Q 005175 84 ADVNVSCGSDRTT-ALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVV 162 (710)
Q Consensus 84 ADVN~~~d~~G~T-PLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~ 162 (710)
+++|.+ +..|.| |||+|+..|+ .++|++||++|++++.+|..|+||||+|+..|+.++++.| ++.|+
T Consensus 68 ~~~~~~-d~~g~ttpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~L----l~~ga---- 135 (156)
T 1bi7_B 68 AEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL----RAAAG---- 135 (156)
T ss_dssp CCCCCC-CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH----SSCC-----
T ss_pred CCCCCc-CCCCCcHHHHHHHHCCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHH----HHcCC----
Confidence 999999 999999 9999999999 9999999999999999999999999999999997776654 55564
Q ss_pred hhccccccccccccCCCCCCCChhchh
Q 005175 163 VASGAEHNLTVSIGSSNSDYSSPLLTA 189 (710)
Q Consensus 163 ~aa~~~~~l~~~in~~d~~G~TPLH~A 189 (710)
+++..|..|.||.+.+
T Consensus 136 -----------~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 136 -----------GTRGSNHARIDAAEGP 151 (156)
T ss_dssp ---------------------------
T ss_pred -----------CCCccCcCcCcccccC
Confidence 4556677778777643
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=217.93 Aligned_cols=186 Identities=17% Similarity=0.148 Sum_probs=150.4
Q ss_pred HHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCC
Q 005175 28 FKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA 107 (710)
Q Consensus 28 Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~ 107 (710)
|+.||+ .+++++... ..+..+.||||+||..|+.++|++||+. |+++|.. +..|+||||+|+..|+
T Consensus 1 v~~ll~-~~~~~~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~- 66 (229)
T 2vge_A 1 MRSVLR-KAGSPRKAR----------RARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGAN- 66 (229)
T ss_dssp ----------CCCCCC----------CTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTC-
T ss_pred Ceehhc-cCCCCcccc----------ccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCC-
Confidence 467788 666666442 2357889999999999999999999999 9999999 9999999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCC-CCCCChh
Q 005175 108 NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSN-SDYSSPL 186 (710)
Q Consensus 108 ~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d-~~G~TPL 186 (710)
.++|++||++|++++.+|..|+||||+|+..|+.++++.|++ .|+ +++..+ ..|.|||
T Consensus 67 --~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~----~ga---------------~~~~~~~~~g~tpL 125 (229)
T 2vge_A 67 --YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ----HGA---------------AIFATTLSDGATAF 125 (229)
T ss_dssp --HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTC---------------CTTCCCSSTTCCTG
T ss_pred --HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC---------------CcccccCCCCCCHH
Confidence 999999999999999999999999999999999888876665 453 455554 6999999
Q ss_pred chh--HhhCCCchhhhc----cCCCccccCCCCccccccccCCCCCCCCCCccccc--ccccccccccccccc
Q 005175 187 LTA--SASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNS--IYATDEFRMFSFKIR 251 (710)
Q Consensus 187 H~A--a~~G~~eile~l----~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~--i~~~De~g~~~f~v~ 251 (710)
|+| +..|+.+++++| ++.+..+..+.++++.++.... ...|+..|++ +...|..|.++++.+
T Consensus 126 ~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A 195 (229)
T 2vge_A 126 EKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWA 195 (229)
T ss_dssp GGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEE
T ss_pred HHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHH
Confidence 999 999999996555 5677888889999997655543 3577888888 677899999999987
No 75
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.90 E-value=1.1e-23 Score=201.54 Aligned_cols=132 Identities=24% Similarity=0.320 Sum_probs=125.4
Q ss_pred CCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 005175 5 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 84 (710)
Q Consensus 5 in~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 84 (710)
++..|..|.||||+|+..|++++|++||+ .|++++.. +..|+||||+|+..|+.++|++||++ |+
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~ 93 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHIL-------------AKERESALSLASTGGYTDIVGLLLER-DV 93 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-TC
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhh-------------cccCCCHHHHHHHCCCHHHHHHHHHc-CC
Confidence 67889999999999999999999999999 78888877 58899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHh
Q 005175 85 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG 155 (710)
Q Consensus 85 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~ 155 (710)
++|.. +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++.+.+
T Consensus 94 ~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 94 DINIY-DWNGGTPLLYAVRGNH---VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160 (172)
T ss_dssp CTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999 9999999999999999 9999999999999999999999999999999999999999887554
No 76
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=7.8e-24 Score=196.04 Aligned_cols=125 Identities=24% Similarity=0.323 Sum_probs=117.6
Q ss_pred CCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 005175 8 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN 87 (710)
Q Consensus 8 ~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN 87 (710)
....+.||||+||..|++++|++||+ .|++++.. |..|.||||+||..|+.++|++||++ |+++|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 74 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMA-NGADVNAK-------------DEYGLTPLYLATAHGHLEIVEVLLKN-GADVN 74 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTT
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence 35568899999999999999999999 78998877 58899999999999999999999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 005175 88 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 151 (710)
Q Consensus 88 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 151 (710)
.. +..|.||||+|+..|+ .++|++|+++|++++.+|.+|+||||+|+..|+.++++.|++
T Consensus 75 ~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 75 AV-DAIGFTPLHLAAFIGH---LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp CC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 99 9999999999999999 999999999999999999999999999999999999988876
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.90 E-value=2.4e-23 Score=196.04 Aligned_cols=128 Identities=25% Similarity=0.257 Sum_probs=119.9
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++ .+..|.||||+|+..|+.+++++|++ .|++++.. +..|+||||+|+..|+.++|++||++
T Consensus 25 g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 89 (153)
T 1awc_B 25 GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDAR-------------TKVDRTPLHMAASEGHANIVEVLLKH 89 (153)
T ss_dssp TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcChHHHHHHHHHc
Confidence 45555 58889999999999999999999999 88888876 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHH
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAI 149 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~L 149 (710)
|+++|.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|
T Consensus 90 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 90 -GADVNAK-DMLKMTALHWATEHNH---QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999 9999999999999999 9999999999999999999999999999999999888764
No 78
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.90 E-value=1.6e-23 Score=204.33 Aligned_cols=132 Identities=22% Similarity=0.264 Sum_probs=126.1
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..|.+|.||||+|+..|+.++|++|++ .|++++.. +..|.||||+|+..|+.+++++||++
T Consensus 58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (192)
T 2rfm_A 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTK-------------DFSGKTPLMWSIIFGYSEMSYFLLEH 123 (192)
T ss_dssp HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred ccccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 56888999999999999999999999999999 78888876 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 152 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~ 152 (710)
|+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++.
T Consensus 124 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 124 -GANVNDR-NLEGETPLIVASKYGR---SEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp -TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 9999999 9999999999999999 9999999999999999999999999999999999999998885
No 79
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=2.2e-24 Score=199.38 Aligned_cols=125 Identities=28% Similarity=0.349 Sum_probs=114.8
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|+|+ ..|.+|.||||+||..|++++|++||+ .|++++.. |..|+||||+|+..|+.+++++||++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~ 65 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVK-------------DHAGWTPLHEACNHGHLKVVELLLQH 65 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 6788 789999999999999999999999999 78898876 58999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHH
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSM 146 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eiv 146 (710)
|++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..+..+++
T Consensus 66 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l 125 (137)
T 3c5r_A 66 -KALVNTT-GYQNDSPLHDAAKNGH---VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125 (137)
T ss_dssp -TCCTTCC-CGGGCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred -CCcccCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHH
Confidence 9999999 9999999999999999 9999999999999999999999999999986654444
No 80
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.90 E-value=1.5e-23 Score=198.11 Aligned_cols=130 Identities=23% Similarity=0.227 Sum_probs=123.1
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
|++++..+..|.||||+|+. |+.++|++|++ .|++++.. +..|.||||+|+..|+.+++++||++
T Consensus 28 ~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 92 (162)
T 1ihb_A 28 NVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLK-------------DRTGFAVIHDAARAGFLDTLQTLLEF 92 (162)
T ss_dssp CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 67899999999999999999 99999999999 78998877 58999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD-PDCVDANGHHPIDVIVLPPKLDSMRAILE 151 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd-~n~~D~~G~TPLhlAa~~G~~eivk~LLe 151 (710)
|+++|.+ +..|.||||+|+..|+ .+++++|+++|++ ++..|..|.||||+|+..|+.++++.|++
T Consensus 93 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 93 -QADVNIE-DNEGNLPLHLAAKEGH---LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158 (162)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred -CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 9999999 9999999999999999 9999999999998 69999999999999999999888877766
No 81
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.90 E-value=3.4e-24 Score=207.13 Aligned_cols=165 Identities=16% Similarity=0.223 Sum_probs=145.2
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 005175 57 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDV 136 (710)
Q Consensus 57 ~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhl 136 (710)
.++.++||.||..|+.++|++||+..+.+++.. +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGR---SAVVEMLIMRGARINVMNRGDDTPLHL 78 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 468899999999999999999999878899998 9999999999999999 999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhc----cCCCccccCCC
Q 005175 137 IVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFND 212 (710)
Q Consensus 137 Aa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l----~d~n~~~~~g~ 212 (710)
|+..|+.++++.|++ .|+ +++..|..|.||||+|+..|+.++++.| ++.+..+..|.
T Consensus 79 A~~~~~~~~v~~Ll~----~g~---------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 139 (179)
T 3f6q_A 79 AASHGHRDIVQKLLQ----YKA---------------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE 139 (179)
T ss_dssp HHHTTCHHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSC
T ss_pred HHHcCCHHHHHHHHH----cCC---------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCC
Confidence 999999888877766 343 5677889999999999999999995554 56778899999
Q ss_pred CccccccccCCCCCCCCCCccccccccccccc
Q 005175 213 VSFGTGAEKREYPIDPSLPDIKNSIYATDEFR 244 (710)
Q Consensus 213 TpLh~Aa~~g~~~i~~~L~d~ga~i~~~De~g 244 (710)
|||++|+..++..+.+.|++.|++++..+..+
T Consensus 140 tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 140 MPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp CGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 99999999999999999999998887765443
No 82
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.90 E-value=2.1e-23 Score=196.26 Aligned_cols=129 Identities=22% Similarity=0.237 Sum_probs=123.1
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
+.+++..|..|.||||+ |..|+.++|++|++ .|++++.. |..|.||||+|+..|+.+++++||++
T Consensus 26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 90 (156)
T 1bd8_A 26 LVHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQ-------------DTSGTSPVHDAARTGFLDTLKVLVEH 90 (156)
T ss_dssp CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CcCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 45889999999999999 99999999999999 79999887 58999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 151 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 151 (710)
|+++|.+ +..|+||||+|+..|+ .++|++|+++ ++++.+|..|.||||+|+..|+.++++.|++
T Consensus 91 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 91 -GADVNVP-DGTGALPIHLAVQEGH---TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp -TCCSCCC-CTTSCCHHHHHHHHTC---HHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred -CCCCCCc-CCCCCcHHHHHHHhCh---HHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 9999999 9999999999999999 9999999999 9999999999999999999999999988876
No 83
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.89 E-value=3.7e-23 Score=196.62 Aligned_cols=130 Identities=28% Similarity=0.340 Sum_probs=119.7
Q ss_pred CCCCCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005175 2 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 81 (710)
Q Consensus 2 Ganin~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 81 (710)
+.+++..+..|.||||+|+..|+.++|++||+ .|++++.. |..|+||||+|+..|+.++|++||++
T Consensus 32 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 97 (165)
T 3twr_A 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAK-------------DKGGLVPLHNACSYGHYEVAELLVKH 97 (165)
T ss_dssp TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCcc-------------CCCCCCHHHHHHHcCcHHHHHHHHhC
Confidence 35667778889999999999999999999999 88998887 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 005175 82 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 151 (710)
Q Consensus 82 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 151 (710)
|+++|.. +..|+||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. |+.++++.|++
T Consensus 98 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~ 161 (165)
T 3twr_A 98 -GAVVNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG 161 (165)
T ss_dssp -TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred -CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence 9999999 9999999999999999 999999999999999999999999999776 88777765554
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=6.4e-23 Score=184.43 Aligned_cols=123 Identities=37% Similarity=0.519 Sum_probs=116.8
Q ss_pred CChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 005175 11 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC 90 (710)
Q Consensus 11 dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~ 90 (710)
+|.||||+|+..|+.++|++|++ .+.+++.. +..|.||||+|+..|+.+++++|+++ |++++.+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~- 64 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK- 64 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCccc-
Confidence 58999999999999999999999 68888876 58899999999999999999999999 9999999
Q ss_pred CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 005175 91 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 152 (710)
Q Consensus 91 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~ 152 (710)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.
T Consensus 65 ~~~g~t~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 65 DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 9999999999999999 9999999999999999999999999999999999988887764
No 85
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=2.9e-23 Score=202.11 Aligned_cols=140 Identities=25% Similarity=0.256 Sum_probs=126.1
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 88 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 88 (710)
+.+|.||||+||..|++++|+.||+ +.++|.. |..|+||||+|+..|+.++|++||++ |+++|.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~ 104 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDH 104 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 4578999999999999999999999 7888876 58999999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcccc
Q 005175 89 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 168 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~ 168 (710)
+.+..|+||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..++
T Consensus 105 ~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-------------------------- 155 (183)
T 3deo_A 105 RDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILK-------------------------- 155 (183)
T ss_dssp CCSSSSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH--------------------------
T ss_pred CCCCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc--------------------------
Confidence 933899999999999999 999999999999999999999999999986321
Q ss_pred ccccccccCCCCCCCChhchhHhhCCCchhhhccC
Q 005175 169 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS 203 (710)
Q Consensus 169 ~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d 203 (710)
...+.++|++|+..|+.++++.|.+
T Consensus 156 ----------~~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 156 ----------TTPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp ----------TCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred ----------CcccccHHHHHHHcCHHHHHHHHHH
Confidence 1234799999999999999887754
No 86
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=212.01 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=123.1
Q ss_pred CCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCc
Q 005175 10 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSADV 86 (710)
Q Consensus 10 ~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GADV 86 (710)
....++|+.|+..|+++.|+.||+ .+.+++..-. ....+..|+||||+||.. |++++|++||++ |+++
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~-------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadv 219 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHL 219 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEE-------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCT
T ss_pred CchHHHHhhhhhccCHHHHHHHHh-cCCcccccCC-------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCC
Confidence 345688999999999999999998 8888886310 001257899999999997 899999999999 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcc
Q 005175 87 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASG 166 (710)
Q Consensus 87 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~ 166 (710)
|.+ |.+|+||||+|+..|+ .++|++||++|||++.+|.+|.||||+|+..|+.++++.|++....
T Consensus 220 n~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------- 284 (301)
T 2b0o_E 220 DAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG----------- 284 (301)
T ss_dssp TCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----------
T ss_pred CCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----------
Confidence 999 9999999999999999 9999999999999999999999999999999999999888875322
Q ss_pred ccccccccccCCCCCCCChhchhHhhCCC
Q 005175 167 AEHNLTVSIGSSNSDYSSPLLTASASGSP 195 (710)
Q Consensus 167 ~~~~l~~~in~~d~~G~TPLH~Aa~~G~~ 195 (710)
.|.||||+|+..|+.
T Consensus 285 --------------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 --------------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp --------------TTSSCCC--------
T ss_pred --------------CCCChhHHHHhcCCc
Confidence 368999999998864
No 87
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=3.5e-23 Score=211.57 Aligned_cols=141 Identities=25% Similarity=0.254 Sum_probs=127.3
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 88 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 88 (710)
+.+|.||||+||..|++++|+.||+ ++++|.. |..|+||||+||..|+.++|++||++ |+++|.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~ 105 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDH 105 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-------------CTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCc
Confidence 3578999999999999999999999 7888877 58899999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhcccc
Q 005175 89 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 168 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~ 168 (710)
+.+..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+..++
T Consensus 106 ~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-------------------------- 156 (244)
T 3ui2_A 106 RDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILK-------------------------- 156 (244)
T ss_dssp CCSSSCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT--------------------------
T ss_pred CCCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh--------------------------
Confidence 933889999999999999 999999999999999999999999999984111
Q ss_pred ccccccccCCCCCCCChhchhHhhCCCchhhhccCC
Q 005175 169 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS 204 (710)
Q Consensus 169 ~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~ 204 (710)
+..+.||||+|+..|+.++++.+.+.
T Consensus 157 ----------~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 157 ----------TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp ----------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 13468999999999999998888764
No 88
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=1.1e-22 Score=184.72 Aligned_cols=112 Identities=27% Similarity=0.389 Sum_probs=104.7
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 88 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 88 (710)
+..|.|+||+|+..|++++|++||+ .+.+++.. |..|+||||+||..|+.++|++||++ |+++|.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~ 68 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRT-------------LEGGRKPLHYAADCGQLEILEFLLLK-GADINA 68 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSC-------------CTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 5678999999999999999999999 88888877 58899999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc
Q 005175 89 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL 139 (710)
Q Consensus 89 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~ 139 (710)
+ |..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+.
T Consensus 69 ~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 69 P-DKHHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp C-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 9 9999999999999999 999999999999999999999999999954
No 89
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.87 E-value=5.9e-23 Score=190.10 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=115.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCC-CCcHH
Q 005175 56 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDAN-GHHPI 134 (710)
Q Consensus 56 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~-G~TPL 134 (710)
+..|.||||+|+..|+.++|++||++ |+++|.+ +..|+||||+|+. |+ .++|++|+++|++++.+|.. |+|||
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 68999999999999999999999999 9999999 9999999999999 99 99999999999999999999 99999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCC
Q 005175 135 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 205 (710)
Q Consensus 135 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n 205 (710)
|+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..|+.+++++|++.+
T Consensus 83 ~~A~~~~~~~~v~~Ll~----~ga---------------~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHR----AGA---------------RLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp HHHHHHTCHHHHHHHHH----TCC---------------CCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH----cCC---------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999888877765 443 56778899999999999999999998887654
No 90
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=4.9e-23 Score=203.15 Aligned_cols=138 Identities=11% Similarity=0.078 Sum_probs=122.2
Q ss_pred CCCCCC-CCChhHHHHHHHcCCH----HHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCC------H
Q 005175 4 NSTAET-EDSFTSMLELASNNDV----EGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS------V 72 (710)
Q Consensus 4 nin~~d-~dG~TpLh~AA~~Gdl----e~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~------~ 72 (710)
+++..+ ..|+||||+|+..|+. ++|++||+ .|+++|.. |.+|+||||+|+..|+ .
T Consensus 29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~-------------d~~g~TpLh~a~~~~~~~~~~~~ 94 (186)
T 3t8k_A 29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSR-------------TKEGTTLFFPLFQGGGNDITGTT 94 (186)
T ss_dssp SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCC-------------CTTCCCTHHHHHHHCTTCHHHHH
T ss_pred CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCcchhhHH
Confidence 345555 6799999999999985 58999999 89999988 5899999999999997 6
Q ss_pred HHHHHHHhcCCCCcccccCCCCC-cHHHHHHhCCCC--CHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHhcCCCHHHHHH
Q 005175 73 DVLKLILLHSSADVNVSCGSDRT-TALHCAASGGSA--NVVDVVRLLLS-AGADPDCVDANGHHPIDVIVLPPKLDSMRA 148 (710)
Q Consensus 73 evVklLLe~~GADVN~~~d~~G~-TPLH~Aa~~G~~--~~~eiVklLLe-~GAd~n~~D~~G~TPLhlAa~~G~~eivk~ 148 (710)
++|++||++ |+|||.+ |..|+ ||||+|+..+.. ...+++++||+ +|+|++.+|..|+||||+|+..|+.++++.
T Consensus 95 ~iv~~Ll~~-Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~ 172 (186)
T 3t8k_A 95 ELCKIFLEK-GADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKM 172 (186)
T ss_dssp HHHHHHHHT-TCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHC-CCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence 899999999 9999999 99999 999999996542 12579999999 999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 005175 149 ILEEVFGSK 157 (710)
Q Consensus 149 LLe~Ll~~g 157 (710)
|.+++.+.+
T Consensus 173 L~~~~~~~~ 181 (186)
T 3t8k_A 173 MEDYIKKYN 181 (186)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 998766544
No 91
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.87 E-value=2e-22 Score=190.94 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=111.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCc-HH
Q 005175 56 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHH-PI 134 (710)
Q Consensus 56 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~T-PL 134 (710)
+..|.||||+||..|+.++|++||++ |+++|.. +..|+||||+|+ .|+ .++|++||++|++++.+|..|+| ||
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRPV 82 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 57899999999999999999999999 9999999 999999999985 888 99999999999999999999999 99
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhcc----CCCccccC
Q 005175 135 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKF 210 (710)
Q Consensus 135 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~----d~n~~~~~ 210 (710)
|+|+..|+.++++.|++. |+ +++..|..|.||||+|+..|+.+++++|+ +.+..+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~----ga---------------~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 143 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRA----GA---------------RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHA 143 (156)
T ss_dssp HHHHHHTCHHHHHHHHHH----TC---------------CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred HHHHHCCCHHHHHHHHHc----CC---------------CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcC
Confidence 999999999988887774 33 56778899999999999999999977766 45566777
Q ss_pred CCCcccc
Q 005175 211 NDVSFGT 217 (710)
Q Consensus 211 g~TpLh~ 217 (710)
|.||.+.
T Consensus 144 g~t~~~~ 150 (156)
T 1bi7_B 144 RIDAAEG 150 (156)
T ss_dssp -------
T ss_pred cCccccc
Confidence 7777653
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=1.5e-22 Score=202.38 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=114.2
Q ss_pred CCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 005175 8 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN 87 (710)
Q Consensus 8 ~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN 87 (710)
.+.+|.||||+||..|++++|+.||+ .|++++.. |..|+||||+||..|+.++|++||++.|+++|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 134 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGL-------------DKAGSTALYWACHGGHKDIVEMLFTQPNIELN 134 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred cccccccccccccccCcHHHHHHHHh-CCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence 45678999999999999999999999 88999877 58999999999999999999999998799999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 005175 88 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 151 (710)
Q Consensus 88 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 151 (710)
.+ +..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+..|+.++++.+++
T Consensus 135 ~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~ 194 (222)
T 3ehr_A 135 QQ-NKLGDTALHAAAWKGY---ADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG 194 (222)
T ss_dssp CC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----
T ss_pred cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhc
Confidence 99 9999999999999999 999999999999999999999999999999777666655544
No 93
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=8e-22 Score=182.45 Aligned_cols=125 Identities=23% Similarity=0.322 Sum_probs=114.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 005175 56 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID 135 (710)
Q Consensus 56 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh 135 (710)
...+.||||+||..|+.++|++||++ |+++|.. +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNGADVNAVDAIGFTPLH 85 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 46789999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCC
Q 005175 136 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS 204 (710)
Q Consensus 136 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~ 204 (710)
+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..|+.++++.|++.
T Consensus 86 ~A~~~~~~~~v~~Ll~----~g~---------------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLK----HGA---------------DVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHHHTCHHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHH----cCC---------------CCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 9999999888877766 343 5667789999999999999999999988754
No 94
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.86 E-value=1.6e-23 Score=229.06 Aligned_cols=177 Identities=13% Similarity=0.062 Sum_probs=144.2
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC---
Q 005175 9 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD--- 85 (710)
Q Consensus 9 d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD--- 85 (710)
+.++.||||+||..|++++|++||+ .|+..... ...+..|.||||+||.+|+.++|++||++ |+|
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~-~ga~~~~~----------~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~ 156 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCL-LLTSDEIV----------KVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIM 156 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTT-C--CCSSC----------C--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHH-cCCcHHHH----------HHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccc
Confidence 4567899999999999999999999 55521110 01134678999999999999999999999 876
Q ss_pred cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC--CCCCCCcHHHHHh-cCCCHHHHHHHHHHHHhCCCCchh
Q 005175 86 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC--VDANGHHPIDVIV-LPPKLDSMRAILEEVFGSKNSSVV 162 (710)
Q Consensus 86 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~--~D~~G~TPLhlAa-~~G~~eivk~LLe~Ll~~ga~~~~ 162 (710)
++.. +.+ .||||+||..|+ .++|++|+++|++++. .|..|.||||+|+ ..|+.++++.|++ .|+
T Consensus 157 ~~i~-~~~-~TpLh~Aa~~G~---~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~----~ga---- 223 (376)
T 2aja_A 157 AMIQ-AEN-YHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD----CPV---- 223 (376)
T ss_dssp HHHS-HHH-HHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT----SHH----
T ss_pred cccC-CCC-CCHHHHHHHCCC---HHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh----CCC----
Confidence 2332 223 999999999999 9999999999999988 8999999999999 9999999887766 221
Q ss_pred hhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCccccCCCCccccccccCCCCCCC
Q 005175 163 VASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDP 228 (710)
Q Consensus 163 ~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~~~g~TpLh~Aa~~g~~~i~~ 228 (710)
.|.||||+|+..|+.+++++|+..+......+++++.|+..|+.+++.
T Consensus 224 ------------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 224 ------------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 271 (376)
T ss_dssp ------------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSS
T ss_pred ------------------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhc
Confidence 168999999999999999998877765555567899999999988764
No 95
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=1.5e-21 Score=180.31 Aligned_cols=124 Identities=20% Similarity=0.166 Sum_probs=112.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 005175 56 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID 135 (710)
Q Consensus 56 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh 135 (710)
|.+|+||||+||..|+.++|++||++ |++++.. +..|+||||+|+..|+ .+++++|+++|++++.+|..|+||||
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~ 81 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHKALVNTTGYQNDSPLH 81 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCcccCcCCCCCCHHH
Confidence 68999999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccC
Q 005175 136 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS 203 (710)
Q Consensus 136 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d 203 (710)
+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..+..++++.+..
T Consensus 82 ~A~~~~~~~~v~~Ll~----~ga---------------~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLS----YGA---------------SRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp HHHHTTCHHHHHHHHH----TTC---------------CTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred HHHHcCCHHHHHHHHH----cCC---------------CCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 9999999888877765 343 566788999999999999888888766543
No 96
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.85 E-value=3.3e-21 Score=173.20 Aligned_cols=124 Identities=34% Similarity=0.522 Sum_probs=114.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 005175 58 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI 137 (710)
Q Consensus 58 ~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA 137 (710)
+|+||||+|+..|+.+++++|+++ |++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence 589999999999999999999999 9999999 9999999999999999 9999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCC
Q 005175 138 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 205 (710)
Q Consensus 138 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n 205 (710)
+..|+.++++.|++ .++ +++..|..|.||||+|+..|+.++++++++.+
T Consensus 76 ~~~~~~~~~~~Ll~----~g~---------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 76 ARNGHLEVVKLLLE----AGA---------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp HHTTCHHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHcChHHHHHHHHH----cCC---------------CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 99999888877665 343 46677899999999999999999999887655
No 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=1.1e-20 Score=206.09 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=118.7
Q ss_pred CCCCCChhHHHHHHHc-CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 005175 7 AETEDSFTSMLELASN-NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD 85 (710)
Q Consensus 7 ~~d~dG~TpLh~AA~~-Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD 85 (710)
..+..+.|+||.|+.. |++++|+.||+ .|+++|... .+.+|.||||+||..|++++|++||++ |++
T Consensus 194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~-----------~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gad 260 (368)
T 3jue_A 194 LGSLHPGALLFRASGHPPSLPTMADALA-HGADVNWVN-----------GGQDNATPLIQATAANSLLACEFLLQN-GAN 260 (368)
T ss_dssp ---CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCC-----------TTTTCCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred cccCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCccc-----------cccCCCCHHHHHHHCCCHHHHHHHHHc-CCC
Confidence 3344567899999999 99999999999 899998762 127899999999999999999999999 999
Q ss_pred cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhc
Q 005175 86 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVAS 165 (710)
Q Consensus 86 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa 165 (710)
+|.. |..|+||||+|+..|+ .++|++||++|++++.+|.+|.||||+|+..|+.++++.|++......
T Consensus 261 vn~~-d~~G~TpLh~A~~~g~---~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~-------- 328 (368)
T 3jue_A 261 VNQA-DSAGRGPLHHATILGH---TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREA-------- 328 (368)
T ss_dssp TTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------
T ss_pred CCCC-CCCCCCHHHHHHHcCc---HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc--------
Confidence 9999 9999999999999999 999999999999999999999999999999999999988887542221
Q ss_pred cccccccccccCCCCCCCChhchhHhhC
Q 005175 166 GAEHNLTVSIGSSNSDYSSPLLTASASG 193 (710)
Q Consensus 166 ~~~~~l~~~in~~d~~G~TPLH~Aa~~G 193 (710)
.....+..+.|+|+++....
T Consensus 329 --------~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 329 --------EAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp ----------------------------
T ss_pred --------cccccCCCCCCHHHHHHHHH
Confidence 11223455677777765543
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.83 E-value=6.7e-21 Score=172.95 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=103.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 005175 56 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID 135 (710)
Q Consensus 56 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh 135 (710)
+..|.||||+|+..|+.++|++||+. |+++|.. +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLL 78 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 46789999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCc
Q 005175 136 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPP 196 (710)
Q Consensus 136 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~e 196 (710)
+|+..|+.++++.|++ .|+ +++..|.+|.||||+|...+..+
T Consensus 79 ~A~~~~~~~~v~~Ll~----~ga---------------~~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 79 SAVYEGHVSCVKLLLS----KGA---------------DKTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp HHHHHTCHHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHCCCHHHHH
T ss_pred HHHHcCCHHHHHHHHH----cCC---------------CCCCcCCCCCCHHHHhCCHHHHH
Confidence 9999999888877766 343 46678899999999996554433
No 99
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=4.1e-20 Score=193.35 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=116.7
Q ss_pred CChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcc
Q 005175 11 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSADVN 87 (710)
Q Consensus 11 dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GADVN 87 (710)
...++|+.|+..|+++.++.+++ .|.+++..-+ ....+..|+||||+||.. |+.++|++||++ |+++|
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~-~g~~~~~~~~-------l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in 199 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYA-DGVDLTEKIP-------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLD 199 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-TTCCTTSBCC-------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTT
T ss_pred hhhhhhhhHhhhcccHHHHHHHH-hhcchhhhcc-------ccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCcc
Confidence 34689999999999999999999 7888765410 112257899999999999 899999999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 005175 88 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV 153 (710)
Q Consensus 88 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L 153 (710)
.+ |..|+||||+|+..|+ .++|++||++|||++.+|.+|.||||+|+..|+.++++.|++..
T Consensus 200 ~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 200 KQ-TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp CC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99 9999999999999999 99999999999999999999999999999999999998888753
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=3.1e-20 Score=209.43 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=114.5
Q ss_pred CChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHH---cCCHHHHHHHHhcCCCCcc
Q 005175 11 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAAT---YGSVDVLKLILLHSSADVN 87 (710)
Q Consensus 11 dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~---~G~~evVklLLe~~GADVN 87 (710)
...+.||.|+..|++++|+.||+ .|+++|.... ....+..|+||||+||. .|+.++|++||++ |+|+|
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~~-------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~vn 201 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLD 201 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHH-TTCCSSSCBC-------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCTT
T ss_pred ccHHHHHHHHhccCHHHHHHHHh-hcccccCCCC-------CcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCCC
Confidence 34578999999999999999999 8899886521 11225789999999976 8999999999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 005175 88 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 151 (710)
Q Consensus 88 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 151 (710)
.+ |.+|+||||+||..|+ .++|++||++|||++.+|.+|+||||+|+..|+.++++.|++
T Consensus 202 ~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~ 261 (497)
T 3lvq_E 202 AK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 261 (497)
T ss_dssp CC-CSSSCCHHHHHTTTTC---HHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99 9999999999999999 999999999999999999999999999999999888776665
No 101
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=1.8e-21 Score=189.34 Aligned_cols=171 Identities=22% Similarity=0.173 Sum_probs=133.0
Q ss_pred HHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHH
Q 005175 19 LASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTAL 98 (710)
Q Consensus 19 AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPL 98 (710)
|++.|..+++++|++....... .|..........+.+|.||||+||..|+.++|++||+ |+++|.. +..|+|||
T Consensus 7 aa~~~~~~~~~~li~~~~~~~~---~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L 80 (183)
T 3deo_A 7 GSRTAGEGAMEYLIEWKDGHSP---SWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTAL 80 (183)
T ss_dssp EEEEETTTEEEEEEEETTCCCC---EEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHH
T ss_pred HHHhcCCchhHHHHHHhCCCCc---cccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHH
Confidence 3445556666666653211111 1222222333445789999999999999999999999 8999999 99999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccC
Q 005175 99 HCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGS 177 (710)
Q Consensus 99 H~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~ 177 (710)
|+|+..|+ .++|++|+++|++++.+| ..|+||||+|+..|+.++++.|++. |+ +++.
T Consensus 81 ~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga---------------~~~~ 138 (183)
T 3deo_A 81 LFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL----GA---------------DIEV 138 (183)
T ss_dssp HHHHHHTC---HHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH----TC---------------CTTC
T ss_pred HHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc----CC---------------CCcC
Confidence 99999999 999999999999999998 8999999999999999988887774 33 5667
Q ss_pred CCCCCCChhchhHhhCCCchhhhccCCCccccCCCCccccccccCCCCCCCCC
Q 005175 178 SNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSL 230 (710)
Q Consensus 178 ~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~~~g~TpLh~Aa~~g~~~i~~~L 230 (710)
.|..|.||||+|+..++. ..+.++|++|+..+..+++..|
T Consensus 139 ~d~~g~tpl~~A~~~~~~-------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 139 EDERGLTALELAREILKT-------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp CCTTSCCHHHHHHHHHHT-------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhccC-------------cccccHHHHHHHcCHHHHHHHH
Confidence 899999999999988754 3456778877777665554433
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.82 E-value=1.1e-20 Score=188.83 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=111.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHH
Q 005175 56 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPI 134 (710)
Q Consensus 56 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPL 134 (710)
+..|.||||+||..|++++|++||+. |+++|.+ +..|+||||+||..|+ .++|++||++ |++++.+|..|+|||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQPNIELNQQNKLGDTAL 144 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred ccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCCCCCccccCCCCCCHH
Confidence 46789999999999999999999998 9999999 9999999999999999 9999999999 999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCc
Q 005175 135 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 206 (710)
Q Consensus 135 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~ 206 (710)
|+|+..|+.++++.|++. |+ +++..|..|.||||+|+..|+.++++.+++.++
T Consensus 145 ~~A~~~~~~~~v~~Ll~~----ga---------------~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAK----GA---------------RTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHHHHHTCHHHHHHHHHH----TC---------------CSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HHHHHcCCHHHHHHHHHc----CC---------------CCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 999999999988887774 33 566788999999999999999999888776663
No 103
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.82 E-value=1.5e-21 Score=199.54 Aligned_cols=143 Identities=24% Similarity=0.172 Sum_probs=127.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHH
Q 005175 56 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPI 134 (710)
Q Consensus 56 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPL 134 (710)
+.+|.||||+||..|+.++|++||+ |+++|.+ +..|+||||+|+..|+ .++|++||++|++++.+| ..|+|||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~t~L 115 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence 3578999999999999999999999 7999999 9999999999999999 999999999999999998 8899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCccccCCCCc
Q 005175 135 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVS 214 (710)
Q Consensus 135 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~~~g~Tp 214 (710)
|+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..+. ...+.||
T Consensus 116 ~~A~~~g~~~~v~~Ll~----~ga---------------~~~~~d~~g~t~l~~A~~~~~-------------~~~~~~~ 163 (244)
T 3ui2_A 116 HMAAGYVRPEVVEALVE----LGA---------------DIEVEDERGLTALELAREILK-------------TTPKGNP 163 (244)
T ss_dssp HHHHHTTCHHHHHHHHH----TTC---------------CTTCCCTTCCCHHHHHHHHHT-------------TCCCSSH
T ss_pred HHHHHcCCHHHHHHHHH----CCC---------------CCCCCCCCCCcHHHHHHHHHh-------------ccCCCCH
Confidence 99999999888877666 343 567789999999999998654 3567899
Q ss_pred cccccccCCCCCCCCCCccccc
Q 005175 215 FGTGAEKREYPIDPSLPDIKNS 236 (710)
Q Consensus 215 Lh~Aa~~g~~~i~~~L~d~ga~ 236 (710)
|++|+..++..++..|.+...+
T Consensus 164 l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 164 MQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHcChHHHHHHHHHhccc
Confidence 9999999999988888765443
No 104
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.82 E-value=1.3e-21 Score=213.90 Aligned_cols=199 Identities=13% Similarity=0.054 Sum_probs=133.7
Q ss_pred CCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 005175 7 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV 86 (710)
Q Consensus 7 ~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV 86 (710)
..+..|.||||+||..|++++|++||+ .|++++..+. + +.+ .||||+||..|+.++|++||++ |+++
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i--------~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~ 189 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMI--------Q--AEN-YHAFRLAAENGHLHVLNRLCEL-APTE 189 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHH--------S--HHH-HHHHHHHHHTTCHHHHHHHHHS-CGGG
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccccc--------C--CCC-CCHHHHHHHCCCHHHHHHHHHc-CCcc
Confidence 345578899999999999999999999 7765322110 0 122 8999999999999999999999 9998
Q ss_pred cc--ccCCCCCcHHHHHH-hCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCCC--Cch
Q 005175 87 NV--SCGSDRTTALHCAA-SGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN--SSV 161 (710)
Q Consensus 87 N~--~~d~~G~TPLH~Aa-~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga--~~~ 161 (710)
+. . +..|.||||+|+ ..|+ .++|++|+++|++ |.||||+|+..|+.++++.|++....... ...
T Consensus 190 ~~~~~-d~~g~TpL~~Aa~~~G~---~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l 258 (376)
T 2aja_A 190 ATAMI-QAENYYAFRWAAVGRGH---HNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAF 258 (376)
T ss_dssp HHHHH-HHHHHHHHHHHHSTTCC---HHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTT
T ss_pred chhcc-CCCCCCHHHHHHHHCCC---HHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcccccccHHH
Confidence 87 6 788999999999 9999 9999999998853 89999999999999999999886543210 011
Q ss_pred hhhccccc-c---------------------------------------ccccccCCCCCCCChhchhHhhCCCchhhhc
Q 005175 162 VVASGAEH-N---------------------------------------LTVSIGSSNSDYSSPLLTASASGSPPSPSRL 201 (710)
Q Consensus 162 ~~aa~~~~-~---------------------------------------l~~~in~~d~~G~TPLH~Aa~~G~~eile~l 201 (710)
..++..+. . ...........+.||||+|+..|+.++++.|
T Consensus 259 ~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lL 338 (376)
T 2aja_A 259 KLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338 (376)
T ss_dssp TTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred HHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHH
Confidence 11110000 0 0000122234566888888888888888888
Q ss_pred cCCC-ccccCCCCccccccccCCCCCCCC
Q 005175 202 VSSP-MALKFNDVSFGTGAEKREYPIDPS 229 (710)
Q Consensus 202 ~d~n-~~~~~g~TpLh~Aa~~g~~~i~~~ 229 (710)
+..+ +.+..++|++.+|...|..++...
T Consensus 339 l~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 339 LSIPSVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp TTSHHHHHSCC------------------
T ss_pred HcChHHHHHHHHhccccccccccccHHHH
Confidence 8765 566778888888877777776643
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1e-19 Score=157.38 Aligned_cols=87 Identities=41% Similarity=0.638 Sum_probs=43.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHh
Q 005175 59 HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIV 138 (710)
Q Consensus 59 G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa 138 (710)
|+||||+||..|+.+++++||++ |+++|.+ +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 44555555555555555555554 5555554 4455555555555555 55555555555555555555555555555
Q ss_pred cCCCHHHHHHHH
Q 005175 139 LPPKLDSMRAIL 150 (710)
Q Consensus 139 ~~G~~eivk~LL 150 (710)
..|+.++++.|+
T Consensus 77 ~~~~~~~~~~Ll 88 (93)
T 1n0q_A 77 RNGHLEVVKLLL 88 (93)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 555544444333
No 106
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=2.7e-20 Score=166.74 Aligned_cols=110 Identities=30% Similarity=0.415 Sum_probs=100.4
Q ss_pred CCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 005175 6 TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD 85 (710)
Q Consensus 6 n~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD 85 (710)
...|.+|.||||+||..|+++++++||+ .+++++.. |..|.||||+|+..|+.+++++||++ |++
T Consensus 3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~ 67 (115)
T 2l6b_A 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNAR-------------SKDGNTPLHLAAKNGHAEIVKLLLAK-GAD 67 (115)
T ss_dssp -CCSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCC-------------CSSSCCTTHHHHTTTCHHHHHHHTTT-TCC
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence 3578999999999999999999999999 78888876 58899999999999999999999999 999
Q ss_pred cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 005175 86 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI 134 (710)
Q Consensus 86 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL 134 (710)
++.+ +..|.||||+|+..|+ .+++++|+++|+++|.++..|.||-
T Consensus 68 ~~~~-d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 68 VNAR-SKDGNTPEHLAKKNGH---HEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTCC-CTTCCCTTHHHHTTTC---HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred Cccc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCccccccc
Confidence 9999 9999999999999999 9999999999999999999999874
No 107
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.80 E-value=5.5e-20 Score=194.67 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=119.6
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccc-----cCCCCCcHHHHHHhC---CCCCHHHHHHHHHHCCCCCCCCCCC
Q 005175 58 EHRTPLMVAATYGSVDVLKLILLHSSADVNVS-----CGSDRTTALHCAASG---GSANVVDVVRLLLSAGADPDCVDAN 129 (710)
Q Consensus 58 ~G~TPLH~AA~~G~~evVklLLe~~GADVN~~-----~d~~G~TPLH~Aa~~---G~~~~~eiVklLLe~GAd~n~~D~~ 129 (710)
...++||.|+..|++++|++||+. |+|+|.. .+..|+||||+|+.. |+ +++|++||++|++++.+|.+
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~---~~iv~~Ll~~gadvn~~d~~ 225 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---LPLVDFIIQNGGHLDAKAAD 225 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTT---HHHHHHHHHHSSCTTCCCTT
T ss_pred chHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCc---HHHHHHHHhcCCCCCCCCCC
Confidence 345789999999999999999998 9999982 288999999999997 67 99999999999999999999
Q ss_pred CCcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCcccc
Q 005175 130 GHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALK 209 (710)
Q Consensus 130 G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~~ 209 (710)
|+||||+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..|+.+++++|++.+..
T Consensus 226 G~TpLh~A~~~g~~~~v~~Ll~----~ga---------------d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-- 284 (301)
T 2b0o_E 226 GNTALHYAALYNQPDCLKLLLK----GRA---------------LVGTVNEAGETALDIARKKHHKECEELLEQAQAG-- 284 (301)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHH----TTC---------------CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHcCCHHHHHHHHH----cCC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--
Confidence 9999999999999888877665 454 5677899999999999999999999999887654
Q ss_pred CCCCccccccccCCC
Q 005175 210 FNDVSFGTGAEKREY 224 (710)
Q Consensus 210 ~g~TpLh~Aa~~g~~ 224 (710)
.|.||||+|+..|+.
T Consensus 285 ~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 TFAFPLHVDYSWVIS 299 (301)
T ss_dssp TTSSCCC--------
T ss_pred CCCChhHHHHhcCCc
Confidence 689999999988763
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=2.1e-19 Score=155.43 Aligned_cols=74 Identities=41% Similarity=0.523 Sum_probs=67.6
Q ss_pred cccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC
Q 005175 44 LWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 122 (710)
Q Consensus 44 L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd 122 (710)
+++......+..|.+|+||||+|+..|+.++|++||++ |++++.+ |.+|+||||+|+..|+ .+++++|+++||+
T Consensus 20 ~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~-d~~g~t~l~~A~~~~~---~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred HHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence 44555566677889999999999999999999999999 9999999 9999999999999999 9999999999985
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=7.4e-19 Score=183.78 Aligned_cols=188 Identities=16% Similarity=0.099 Sum_probs=141.9
Q ss_pred CCCCChhHHHHHHHcCCHHHHHHHHhcCCC----Cccc------cccc----cccccCCccc---CCCCChHHHHHHHcC
Q 005175 8 ETEDSFTSMLELASNNDVEGFKRMLERDPS----SVDE------VGLW----YGRVNGSKQM---VSEHRTPLMVAATYG 70 (710)
Q Consensus 8 ~d~dG~TpLh~AA~~Gdle~Vk~LLe~~ga----dVn~------~~L~----~a~~~g~~~~---d~~G~TPLH~AA~~G 70 (710)
.|..+.+.|+.+...|+..+.+.+...-.. ..+. ..-| |......... +....++|+.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 577788999999999998776655431110 0000 0001 1111111111 123457999999999
Q ss_pred CHHHHHHHHhcCCCCccccc-----CCCCCcHHHHHHhC---CCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC
Q 005175 71 SVDVLKLILLHSSADVNVSC-----GSDRTTALHCAASG---GSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK 142 (710)
Q Consensus 71 ~~evVklLLe~~GADVN~~~-----d~~G~TPLH~Aa~~---G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~ 142 (710)
+++.+++|++. |++++... +..|+||||+|+.. |+ .++|++||++|+++|.+|..|+||||+|+..|+
T Consensus 142 d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~---~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 142 DIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTS---LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp CHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT---HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred ccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccch---HHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 99999999999 99955331 78899999999999 77 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCccccCCCCccccccccC
Q 005175 143 LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKR 222 (710)
Q Consensus 143 ~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~~~g~TpLh~Aa~~g 222 (710)
.++++.|++ .|+ +++..|.+|.||||+|+..|+.+++++|+..+. +.+++|.+++..
T Consensus 218 ~~~v~~Ll~----~ga---------------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~v~~~ 274 (278)
T 1dcq_A 218 AECLKLLLR----GKA---------------SIEIANESGETPLDIAKRLKHEHCEELLTQALS----GRFNSHVHVEYE 274 (278)
T ss_dssp HHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT----TCCCSSCCCCCC
T ss_pred HHHHHHHHH----cCC---------------CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcceeeecc
Confidence 888876665 454 567789999999999999999999999987664 456677666543
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=1.9e-18 Score=154.53 Aligned_cols=95 Identities=29% Similarity=0.411 Sum_probs=88.2
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 005175 55 MVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI 134 (710)
Q Consensus 55 ~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL 134 (710)
.|.+|+||||+||..|+.+++++||++ |+++|.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+|||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAKGADVNARSKDGNTPE 79 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCHH
Confidence 468999999999999999999999999 9999999 9999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCC
Q 005175 135 DVIVLPPKLDSMRAILEEVFGSKN 158 (710)
Q Consensus 135 hlAa~~G~~eivk~LLe~Ll~~ga 158 (710)
|+|+..|+.++++.|+ +.|+
T Consensus 80 ~~A~~~~~~~~~~~Ll----~~ga 99 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLD----AKGA 99 (115)
T ss_dssp HHHHTTTCHHHHHHHH----TTSS
T ss_pred HHHHHCCCHHHHHHHH----HcCC
Confidence 9999999977776554 4565
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=3.7e-18 Score=192.43 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=112.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCcccc-----cCCCCCcHHHHHHh---CCCCCHHHHHHHHHHCCCCCCCCCCCC
Q 005175 59 HRTPLMVAATYGSVDVLKLILLHSSADVNVS-----CGSDRTTALHCAAS---GGSANVVDVVRLLLSAGADPDCVDANG 130 (710)
Q Consensus 59 G~TPLH~AA~~G~~evVklLLe~~GADVN~~-----~d~~G~TPLH~Aa~---~G~~~~~eiVklLLe~GAd~n~~D~~G 130 (710)
..+.||.|+..|++++|+.||++ |+|+|.. .+..|+||||+||. .|+ .++|++||++|||+|.+|.+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~---~~~v~~Ll~~ga~vn~~d~~g 207 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---LPLVDFIIQNGGHLDAKAADG 207 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTT---HHHHHHHHHHSCCTTCCCSSS
T ss_pred cHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhccccc---HHHHHHHHHcCCCCCccCCCC
Confidence 44789999999999999999999 9999865 26789999999976 888 999999999999999999999
Q ss_pred CcHHHHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCCccccC
Q 005175 131 HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKF 210 (710)
Q Consensus 131 ~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n~~~~~ 210 (710)
+||||+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..|+.+++++|++.++...
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~----~ga---------------~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~- 267 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLK----GRA---------------LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF- 267 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHH----TCC---------------CCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred CcHHHHHHHcCCHHHHHHHHH----cCC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-
Confidence 999999999999888877665 454 677889999999999999999999998887775443
Q ss_pred CCCccccccc
Q 005175 211 NDVSFGTGAE 220 (710)
Q Consensus 211 g~TpLh~Aa~ 220 (710)
.+|+|.+..
T Consensus 268 -~~~~h~~~~ 276 (497)
T 3lvq_E 268 -AFPLHVDYS 276 (497)
T ss_dssp ----------
T ss_pred -CCcceeecc
Confidence 367776643
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.74 E-value=2.1e-18 Score=188.11 Aligned_cols=124 Identities=23% Similarity=0.250 Sum_probs=112.8
Q ss_pred CCChHHHHHHHc-CCHHHHHHHHhcCCCCcccccC--CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 005175 58 EHRTPLMVAATY-GSVDVLKLILLHSSADVNVSCG--SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI 134 (710)
Q Consensus 58 ~G~TPLH~AA~~-G~~evVklLLe~~GADVN~~~d--~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL 134 (710)
.+.|+||.|+.. |++++|++||++ |+|+|.. + ..|.||||+|+..|+ +++|++||++|+++|.+|..|+|||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~Gadvn~~d~~G~TpL 272 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQNGANVNQADSAGRGPL 272 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 456899999999 999999999999 9999998 6 899999999999999 9999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCchhhhccccccccccccCCCCCCCChhchhHhhCCCchhhhccCCC
Q 005175 135 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 205 (710)
Q Consensus 135 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLH~Aa~~G~~eile~l~d~n 205 (710)
|+|+..|+.++++.|++ .|+ +++..|.+|.||||+|+..|+.+++++|+...
T Consensus 273 h~A~~~g~~~~v~~LL~----~Ga---------------d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 273 HHATILGHTGLACLFLK----RGA---------------DLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHHHHTCHHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHH----CcC---------------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999888877665 443 56778999999999999999999988887544
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.72 E-value=1.5e-17 Score=148.83 Aligned_cols=92 Identities=32% Similarity=0.441 Sum_probs=85.1
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCc
Q 005175 53 KQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHH 132 (710)
Q Consensus 53 ~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~T 132 (710)
..+|.+|.||||+||..|+.++|++||++ |+++|.+ |..|+||||+|+..|+ .++|++||++|++++.+|..|+|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t 92 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEAGADVXAQDKFGKT 92 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccCCCc
Confidence 34578999999999999999999999999 9999999 9999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHH
Q 005175 133 PIDVIVLPPKLDSMRAI 149 (710)
Q Consensus 133 PLhlAa~~G~~eivk~L 149 (710)
|||+|+..|+.++++.|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999888754
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=1.6e-16 Score=142.05 Aligned_cols=93 Identities=25% Similarity=0.324 Sum_probs=84.4
Q ss_pred CCCCCCCChhHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 005175 5 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 84 (710)
Q Consensus 5 in~~d~dG~TpLh~AA~~Gdle~Vk~LLe~~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 84 (710)
+.-.|.+|.|+||+||..|++++|++||+ .+++++.. |..|+||||+||..|+.++|++||++ |+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~-------------d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga 81 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAK-------------DKNGSTPLHLAARNGHLEVVKLLLEA-GA 81 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence 34568899999999999999999999999 78999887 58999999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 005175 85 DVNVSCGSDRTTALHCAASGGSANVVDVVRLL 116 (710)
Q Consensus 85 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklL 116 (710)
+++.+ +..|+||||+|+..|+ .+++++|
T Consensus 82 ~~~~~-d~~g~tpl~~A~~~~~---~~~~~~L 109 (110)
T 2zgd_A 82 DVXAQ-DKFGKTAFDISIDNGN---EDLAEIL 109 (110)
T ss_dssp CTTCC-CTTSCCHHHHHHHHTC---HHHHHHH
T ss_pred Ccccc-ccCCCcHHHHHHHcCC---HHHHHHh
Confidence 99999 9999999999999999 9999987
No 115
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.59 E-value=1.4e-08 Score=85.77 Aligned_cols=61 Identities=36% Similarity=0.791 Sum_probs=29.4
Q ss_pred CccccCCCCCC-CCCCCCCCCCccccccceeccC---CCCccccccCCCC---CCCCCCc-ccccCCccc
Q 005175 281 FHYSCVPCPDF-RKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKDG---TSCDRRV-CFFAHTAEE 342 (710)
Q Consensus 281 y~Ys~~~CP~~-rkG~C~~GD~C~~aH~~~E~~~---hP~~ykt~~C~~~---~~C~~~~-C~faH~~~e 342 (710)
-.|...+|+.| +.|.|++|+.|.|+|+..|++. || .|+|.+|+.| ..|+++. |.|+|..+|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 35788999998 5899999999999999999884 44 7999999975 4799976 999999876
No 116
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.29 E-value=6.5e-08 Score=80.39 Aligned_cols=60 Identities=25% Similarity=0.659 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCCCC-CccccccceeccCCCCccccccCCCC--CCCCCCcccccCCcccccc
Q 005175 286 VPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRP 345 (710)
Q Consensus 286 ~~CP~~rkG~C~~GD-~C~~aH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~ 345 (710)
..|.+|.+|.|.+|+ .|.|+|...+.+.++..+++..|.+| +.|.++.|.|+|...+|+.
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred hhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 469999999999999 69999999999999999999999987 5899999999999998873
No 117
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=4.2e-06 Score=73.98 Aligned_cols=61 Identities=26% Similarity=0.634 Sum_probs=54.5
Q ss_pred cCCCCCCCCCCCCCCC-CccccccceeccCCCCccccccCCCC--CCCCCCcccccCCcccccc
Q 005175 285 CVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRP 345 (710)
Q Consensus 285 ~~~CP~~rkG~C~~GD-~C~~aH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~ 345 (710)
...|.+|.+|.|.+|| .|.|+|...+....+...+...|.+| +.|.|+.|.|.|...+|+.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA 83 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence 4569999999999999 89999999888777778999999998 6999999999999988765
No 118
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.51 E-value=4.8e-05 Score=67.21 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=41.3
Q ss_pred ccccCCCCCCCCCCCCCCCCccccccceeccCCCCccccccCCCC---CCCCCCc-ccccCCccc
Q 005175 282 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRV-CFFAHTAEE 342 (710)
Q Consensus 282 ~Ys~~~CP~~rkG~C~~GD~C~~aH~~~E~~~hP~~ykt~~C~~~---~~C~~~~-C~faH~~~e 342 (710)
.+....|..|..|.|.+|+.|.|+|. +..|+.| ..|+++. |.|+|....
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 36778899999999999999999999 5678865 5799966 999998643
No 119
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=9.4e-05 Score=62.36 Aligned_cols=57 Identities=26% Similarity=0.532 Sum_probs=45.5
Q ss_pred CccccCCCCCCCCCCCCCCCCccccccceeccCCCCccccccCCCC---CCCCCCcccccCCccccc
Q 005175 281 FHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRVCFFAHTAEELR 344 (710)
Q Consensus 281 y~Ys~~~CP~~rkG~C~~GD~C~~aH~~~E~~~hP~~ykt~~C~~~---~~C~~~~C~faH~~~elr 344 (710)
..+....|..|.+|.|.+||.|.|+|.... -++..|+.| ..|....|.|+|...+.+
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESK 65 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSS
T ss_pred CCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCcccc
Confidence 345678899999999999999999999553 355679876 689966799999976543
No 120
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.90 E-value=0.00018 Score=59.84 Aligned_cols=56 Identities=27% Similarity=0.568 Sum_probs=43.9
Q ss_pred ccccCCCCCCCCCCCCCCCCccccccceeccCCCCccccccCCCC---CCCCCCcccccCCccccc
Q 005175 282 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRVCFFAHTAEELR 344 (710)
Q Consensus 282 ~Ys~~~CP~~rkG~C~~GD~C~~aH~~~E~~~hP~~ykt~~C~~~---~~C~~~~C~faH~~~elr 344 (710)
......|..|.+|.|.+|+.|.|+|... .-++..|+.| ..|.+..|.|.|...+.|
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~-------~~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYD-------MTKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCC-------TTSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCccccc-------cccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 3456789999999999999999999943 2366789874 689997799999876554
No 121
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.0002 Score=58.62 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=15.0
Q ss_pred ccccCCCC--CCCCCCc-ccccCCcccccc
Q 005175 319 RTRLCKDG--TSCDRRV-CFFAHTAEELRP 345 (710)
Q Consensus 319 kt~~C~~~--~~C~~~~-C~faH~~~elr~ 345 (710)
++++|+.| ..|+++. |.|||+.+|||.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 33566553 2566654 666666666654
No 122
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.00015 Score=59.34 Aligned_cols=40 Identities=28% Similarity=0.606 Sum_probs=34.8
Q ss_pred CCCCCCCCCCCCCCCCccccccceeccC---CCCccccccCCC
Q 005175 286 VPCPDFRKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKD 325 (710)
Q Consensus 286 ~~CP~~rkG~C~~GD~C~~aH~~~E~~~---hP~~ykt~~C~~ 325 (710)
.+|..|.+|.|++|+.|.|||+..|+.. .+...++++|+-
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A 63 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA 63 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 8999998899999999999999999975 466778887764
No 123
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.45 E-value=0.00061 Score=58.27 Aligned_cols=65 Identities=31% Similarity=0.665 Sum_probs=48.1
Q ss_pred cCCCCCCCCCCCCCCC-CccccccceeccCCCCccccccCCCC--CCCCCCcccccCCccccccccccCC
Q 005175 285 CVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRPLYVSNG 351 (710)
Q Consensus 285 ~~~CP~~rkG~C~~GD-~C~~aH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~~~~~~ 351 (710)
...|.+|.+|.|.++| .|.|+|....... ..-+...|.+| +.|.|+.|.|.|....|..-.-.+|
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~--~~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~~~~i~g 76 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHPSKSCQV--ENGRVIACFDSLKGRCSRENCKYLHPPPHLKTQLEING 76 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCCCTTCCE--ETTEEECCHHHHTTCCCCSSCSSCCCCHHHHHHHHHHT
T ss_pred chhcHHHhcCCCCCCCCCCCCcCCCccccc--cCCceeehhHhhhccccCCCcceeCChHHHHHHHhcCC
Confidence 3569999999999998 9999999542211 12345568877 4799999999999888776544444
No 124
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.11 E-value=0.0024 Score=53.27 Aligned_cols=54 Identities=26% Similarity=0.535 Sum_probs=12.6
Q ss_pred ccCCCCCCCccccCCCCccCCCCCcCccccCCCCCCC-CCCCCCCCCcccccccee
Q 005175 256 AYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFR-KGACRRGDMCEYAHGVFE 310 (710)
Q Consensus 256 ~~shdwteCpf~HpGe~arRRdpR~y~Ys~~~CP~~r-kG~C~~GD~C~~aH~~~E 310 (710)
+.+.....|.|.|..+..+. ..+.-.|....|+.|. .|.|++|+.|.|+|...|
T Consensus 22 G~C~~G~~C~f~H~~~e~~~-~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 22 GRCRYGAKCQFAHGLGELRQ-ANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCTTTTTCSSCSSSCCGGG-TC---------------------------------
T ss_pred CCcCCCCCccCCCCChhhcc-ccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 34455567999996543332 2233356778999764 789999999999999765
No 125
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.63 E-value=0.0014 Score=56.79 Aligned_cols=60 Identities=30% Similarity=0.693 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCCCC-CccccccceeccCCCCccccccCCCC--CCCCCCcccccCCcccccccc
Q 005175 286 VPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRPLY 347 (710)
Q Consensus 286 ~~CP~~rkG~C~~GD-~C~~aH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~~ 347 (710)
..|.+|.+|.|.++| .|.|+|........ .-+...|.+| ..|.|..|.|.|....|..-.
T Consensus 18 ~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~--~~~~~vC~dflkG~C~r~~Cky~H~~~hl~~~~ 80 (89)
T 2rpp_A 18 EVCRQFQRGTCSRSDEECKFAHPPKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPTHLKTQL 80 (89)
T ss_dssp CBCHHHHHTCCCCCTTTSSSBCCCSSSCCB--TTBEEBCHHHHHTCCCCTTCCSBCCCHHHHHHH
T ss_pred hhchHHhcCCCCCCCCCCCCcCCCcccccc--CCceeeehhhhhCcCCCCCcceecCHHHHHHHH
Confidence 459999999999999 99999985532111 2245668887 489999999999988776543
No 126
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=90.04 E-value=0.13 Score=45.11 Aligned_cols=33 Identities=33% Similarity=0.886 Sum_probs=27.6
Q ss_pred CCCCccccCCCCccCCCCCcCccccCCCCCC-CCCCCCCCCCccccccc
Q 005175 261 WTECPFVHPGENARRRDPRKFHYSCVPCPDF-RKGACRRGDMCEYAHGV 308 (710)
Q Consensus 261 wteCpf~HpGe~arRRdpR~y~Ys~~~CP~~-rkG~C~~GD~C~~aH~~ 308 (710)
...|+|.|. ...|+.| ..|.|.+|+.|.|.|..
T Consensus 27 G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 27 AENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDP 60 (98)
T ss_dssp STTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred CCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCC
Confidence 346899995 4679998 58999999999999984
No 127
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.93 E-value=0.26 Score=41.07 Aligned_cols=53 Identities=19% Similarity=0.403 Sum_probs=36.6
Q ss_pred ccCCCCCCCccccCCCCccCCCCCcCccccCCCCCCCC-CCCCCCCCccccccceeccCCCCccccccCCCC
Q 005175 256 AYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG 326 (710)
Q Consensus 256 ~~shdwteCpf~HpGe~arRRdpR~y~Ys~~~CP~~rk-G~C~~GD~C~~aH~~~E~~~hP~~ykt~~C~~~ 326 (710)
+.+.....|.|.|..... ....|..|.+ |.|. ++.|.|.|... ..++..|.+|
T Consensus 19 G~C~~G~~C~fsH~~~~~----------~~~~C~~f~~~G~C~-~~~C~f~H~~~-------~~~~~~C~~f 72 (77)
T 2d9n_A 19 GLCKKGDQCEFLHEYDMT----------KMPECYFYSKFGECS-NKECPFLHIDP-------ESKIKDCPWS 72 (77)
T ss_dssp TCCSCTTSSSSBCSCCTT----------TSCBCHHHHHTCCCC-CSSCSSBCCCT-------TSSCSSSSCC
T ss_pred CcCCCCCCCCCccccccC----------cCCCCcccCCCCccC-CCCeeccCCCc-------cccCCCCccc
Confidence 444444569999954311 2246998887 9999 89999999943 3466777765
No 128
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=85.13 E-value=0.27 Score=40.20 Aligned_cols=45 Identities=29% Similarity=0.642 Sum_probs=32.4
Q ss_pred CCccccCCCCccCCCCCcCccccCCCCCCCCCCCCCCCCccccccceec
Q 005175 263 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFEC 311 (710)
Q Consensus 263 eCpf~HpGe~arRRdpR~y~Ys~~~CP~~rkG~C~~GD~C~~aH~~~E~ 311 (710)
+|+|.|+.+... .+...+....|.+|.+|.|.++ .|.|.|...++
T Consensus 23 ~C~f~H~~~~~~---~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 23 DCRFAHPADSTM---IDTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp TCSSBCCCTTSC---CBTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHHH
T ss_pred CCCCccCccccc---ccccCCcceeccccCcCCCCCC-CcCeeCCHHHH
Confidence 599999654211 1223455677999999999999 99999985543
No 129
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=83.63 E-value=0.24 Score=41.81 Aligned_cols=41 Identities=27% Similarity=0.681 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCCCCCCccccccceeccCCCCccccccCCCCCCCCCCcccccCCc
Q 005175 286 VPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTA 340 (710)
Q Consensus 286 ~~CP~~rkG~C~~GD~C~~aH~~~E~~~hP~~ykt~~C~~~~~C~~~~C~faH~~ 340 (710)
..|..... |.+ ..|.|.|- ....|+.+..|.+..|.|.|-.
T Consensus 32 ~~Cr~g~~--C~~-~~C~f~HP-----------~~~~Crf~~~C~n~~C~F~Hp~ 72 (80)
T 2lhn_A 32 IMCREGAN--CTR-IDCLFGHP-----------INEDCRFGVNCKNIYCLFRHPP 72 (80)
Confidence 35555443 666 35777663 1356888889999889999953
No 130
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=80.42 E-value=0.39 Score=40.49 Aligned_cols=41 Identities=29% Similarity=0.769 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCCCCCCccccccceeccCCCCccccccCCCCCCCCCCcccccCC
Q 005175 286 VPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHT 339 (710)
Q Consensus 286 ~~CP~~rkG~C~~GD~C~~aH~~~E~~~hP~~ykt~~C~~~~~C~~~~C~faH~ 339 (710)
..|..+.. |.+ +.|.|.|... ...|+.+..|.+..|.|+|-
T Consensus 10 e~CKf~~~--Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP 50 (80)
T 2lhn_A 10 EQCKFGTH--CTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP 50 (80)
Confidence 45644443 888 8999999632 34799999999999999996
No 131
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.14 E-value=0.57 Score=41.01 Aligned_cols=45 Identities=29% Similarity=0.635 Sum_probs=32.2
Q ss_pred CCccccCCCCccCCCCCcCccccCCCCCCCCCCCCCCCCccccccceec
Q 005175 263 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFEC 311 (710)
Q Consensus 263 eCpf~HpGe~arRRdpR~y~Ys~~~CP~~rkG~C~~GD~C~~aH~~~E~ 311 (710)
+|+|.|+-..... .........|.+|.+|.|.++ .|.|.|...++
T Consensus 37 ~C~FsH~~~~~~~---~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 37 DCRFAHPADSTMI---DTSDNTVTVCMDYIKGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp HCSSBCCSSCCSC---CTTTCEEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred CCCCcCCchhccc---cccCCccccchhhccCCCCCC-CcCccCChHHH
Confidence 5999997543211 122355667999999999999 99999985543
No 132
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=71.46 E-value=0.47 Score=40.84 Aligned_cols=52 Identities=33% Similarity=0.654 Sum_probs=37.1
Q ss_pred CCccccCCCCccCCCCCcCccccCCCCCCCCCCCCCCCCccccccceeccCCCCccccccCCCCC
Q 005175 263 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGT 327 (710)
Q Consensus 263 eCpf~HpGe~arRRdpR~y~Ys~~~CP~~rkG~C~~GD~C~~aH~~~E~~~hP~~ykt~~C~~~~ 327 (710)
+|.|.|+.....- -...-..|-+|.+|.|.++ .|.|.|. |...+++++-+|+
T Consensus 34 ~CrfsH~~~~~~v-----~~~~~~vC~dflkG~C~r~-~Cky~H~-------~~hl~~~~~i~g~ 85 (89)
T 2rpp_A 34 ECKFAHPPKSCQV-----ENGRVIACFDSLKGRCSRE-NCKYLHP-------PTHLKTQLEINSG 85 (89)
T ss_dssp TSSSBCCCSSSCC-----BTTBEEBCHHHHHTCCCCT-TCCSBCC-------CHHHHHHHHHCSC
T ss_pred CCCCcCCCccccc-----cCCceeeehhhhhCcCCCC-CcceecC-------HHHHHHHHHhcCC
Confidence 6999997653211 1234566888999999998 9999998 5566666665554
No 133
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=63.09 E-value=1.9 Score=35.37 Aligned_cols=43 Identities=21% Similarity=0.430 Sum_probs=30.6
Q ss_pred ccCCCCCCCccccCCCCccCCCCCcCccccCCCCCCCC-CCCCCCCCccccccce
Q 005175 256 AYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVF 309 (710)
Q Consensus 256 ~~shdwteCpf~HpGe~arRRdpR~y~Ys~~~CP~~rk-G~C~~GD~C~~aH~~~ 309 (710)
+.+.....|+|.|.... .....|..|.+ |.|.+ +.|.|.|...
T Consensus 25 G~C~~G~~C~fsH~~~~----------~~~~~C~~f~~~G~C~~-~~C~y~H~~p 68 (72)
T 2rhk_C 25 GLCKKGDQCEFLHEYDM----------TKMSECYFYSKFGECSN-KECPFLHIDP 68 (72)
T ss_dssp TCCCCGGGSSSBCSCCT----------TSCCBCHHHHHHSCCSB-TTCCSBCCCC
T ss_pred CCCCCCCCCCCcccccc----------ccCCcccccCCCCCCCC-CCeeccCCCc
Confidence 44444445999996421 12446999988 99999 9999999854
No 134
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=58.82 E-value=2.5 Score=35.70 Aligned_cols=40 Identities=35% Similarity=0.717 Sum_probs=29.5
Q ss_pred CCccccCCCCccCCCCCcCccccCCCCCCCCCCCCCCCCccccccc
Q 005175 263 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGV 308 (710)
Q Consensus 263 eCpf~HpGe~arRRdpR~y~Ys~~~CP~~rkG~C~~GD~C~~aH~~ 308 (710)
+|.|.|+.... ..-...-..|-+|-+|.|.++ .|.|.|..
T Consensus 26 ~C~f~H~~~~~-----~~~~~~~~vC~dflkG~C~r~-~C~y~H~~ 65 (83)
T 3d2n_A 26 ECKFAHPSKSC-----QVENGRVIACFDSLKGRCSRE-NCKYLHPP 65 (83)
T ss_dssp TCSSBCCCTTC-----CEETTEEECCHHHHTTCCCCS-SCSSCCCC
T ss_pred CCCCcCCCccc-----cccCCceeehhHhhhccccCC-CcceeCCh
Confidence 69999975421 111234567889999999998 99999984
No 135
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=56.54 E-value=3.4 Score=31.42 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=17.8
Q ss_pred cccccCCCC---CCCCCCc-ccccCCcc
Q 005175 318 YRTRLCKDG---TSCDRRV-CFFAHTAE 341 (710)
Q Consensus 318 ykt~~C~~~---~~C~~~~-C~faH~~~ 341 (710)
.++.+|..| ..|+++. |.+.|.++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 567778865 4688876 88888865
No 136
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=51.93 E-value=2.2 Score=43.22 Aligned_cols=22 Identities=45% Similarity=0.824 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCCCCcccccc
Q 005175 286 VPCPDFRKGACRRGDMCEYAHG 307 (710)
Q Consensus 286 ~~CP~~rkG~C~~GD~C~~aH~ 307 (710)
..|..|.+|.|.+|+.|.|.|.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBS
T ss_pred eEcCccccCCCCCCCCCCccCC
Confidence 4699999999999999999886
No 137
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.02 E-value=1.2e+02 Score=33.46 Aligned_cols=122 Identities=12% Similarity=0.114 Sum_probs=70.2
Q ss_pred HHHHHHcCCHHHHHHHHhc---CCCCccccccccccccCCcccCCCCChHHHHHHHcC-C-------------HHHHHHH
Q 005175 16 MLELASNNDVEGFKRMLER---DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG-S-------------VDVLKLI 78 (710)
Q Consensus 16 Lh~AA~~Gdle~Vk~LLe~---~gadVn~~~L~~a~~~g~~~~d~~G~TPLH~AA~~G-~-------------~evVklL 78 (710)
|-..++.|+++.+..|++. .|...|... .+.|..|+..+ . .++.+.+
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t----------------yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYH----------------YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH----------------HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH----------------HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 4455678998777766653 455555432 34444444321 1 3456666
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHhCC
Q 005175 79 LLHSSADVNVSCGSDRTTALHCAASGGSA-NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK 157 (710)
Q Consensus 79 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~-~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g 157 (710)
.+. |..+|.. . -.+-+...+..|.. .+.++++.+.+.|..++... -++.|...+..|..+.+..+++.+.+.|
T Consensus 97 ~~~-G~~Pd~~-t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 97 IVD-KVVPNEA-T--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHT-TCCCCHH-H--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHh-CCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666 7777655 1 12344555666661 11334445556677666543 1345556677888888888888888777
Q ss_pred CC
Q 005175 158 NS 159 (710)
Q Consensus 158 a~ 159 (710)
..
T Consensus 171 ~~ 172 (501)
T 4g26_A 171 VV 172 (501)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 138
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.04 E-value=1.5e+02 Score=32.49 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=58.5
Q ss_pred hHHHHHHHcCCHHHHHHHH----hcCCCCcccccCCCCCcHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 005175 61 TPLMVAATYGSVDVLKLIL----LHSSADVNVSCGSDRTTALHCAASGGSA-NVVDVVRLLLSAGADPDCVDANGHHPID 135 (710)
Q Consensus 61 TPLH~AA~~G~~evVklLL----e~~GADVN~~~d~~G~TPLH~Aa~~G~~-~~~eiVklLLe~GAd~n~~D~~G~TPLh 135 (710)
+.+...+..|..+-+..|+ +. |..+|.. .-.+-|...+..|.. .+.++.+.+.+.|..++.... .+.|.
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~---tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~ 183 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLR---SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLK 183 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccc---eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHH
Confidence 4566777889876655554 44 7766655 112344455667771 123455566677887766432 24566
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCC
Q 005175 136 VIVLPPKLDSMRAILEEVFGSKN 158 (710)
Q Consensus 136 lAa~~G~~eivk~LLe~Ll~~ga 158 (710)
..+..|+.+-+..+++.+.+.+.
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHhhCCCHHHHHHHHHHHHHhCC
Confidence 67789999999999988777664
Done!