BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005176
(710 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92609|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1
Length = 795
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 161/352 (45%), Gaps = 79/352 (22%)
Query: 1 MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 60
++NPLSQ+ S W +FF+ EL M++QD+ R +PE +FQ + +L +L +
Sbjct: 138 INNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEM-QFFQQENVRKILTDVLFCYARE 196
Query: 61 HPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFK 120
+ + Y+QGMHELLAP+++VLH D +
Sbjct: 197 NEQLLYKQGMHELLAPIVFVLHC----------------------------------DHQ 222
Query: 121 KFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKF--MEHDA 178
FL + E S S ++++V L+PE DAY +L F EHD
Sbjct: 223 AFLHASE----SAQPSEEMKTV--LNPEYLE----HDAYAVFSQLMETAEPWFSTFEHDG 272
Query: 179 YCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVE 238
+ LM FA G + V + + HLL D L+ HL
Sbjct: 273 QKGKETLMTPIP--------FARPQDLGPTIAI--VTKVNQIQDHLLKKHDIELYMHLNR 322
Query: 239 LGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPR 298
L + PQ +GLRW+R+LFGREF L DLL++WD +FA G G
Sbjct: 323 LEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFAD-------------GLSLG------ 363
Query: 299 GALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 350
L+ + V+M+LYIR +L+++ N TCL L+++P ++ +I K L+
Sbjct: 364 --LVDYIFVAMLLYIRDALISS-NYQTCLGLLMHYPFIGDVHSLILKALFLR 412
>sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2
Length = 815
Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 162/352 (46%), Gaps = 79/352 (22%)
Query: 1 MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 60
++NPLSQ+ S W +FF+ EL M++QD+ R +PE +FQ + +L +L +
Sbjct: 138 INNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEM-QFFQQENVRKILTDVLFCYARE 196
Query: 61 HPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFK 120
+ + Y+QGMHELLAP+++ LH D +
Sbjct: 197 NEQLLYKQGMHELLAPIIFTLHC----------------------------------DHQ 222
Query: 121 KFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKF--MEHDA 178
FL + E S S +++++ L+PE DAY +L F EHD
Sbjct: 223 AFLHASE----SAQPSEEMKTL--LNPEYLE----HDAYAMFSQLMETAEPWFSTFEHDG 272
Query: 179 YCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVE 238
+ LM FA G + V + + HLL D L+ HL
Sbjct: 273 QKGKETLMAPIP--------FARPQDLGPTVAI--VTKVNQIQDHLLKKHDIELYMHLNR 322
Query: 239 LGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPR 298
L + PQ +GLRW+R+LFGREF L DLL++WD +FA DS +
Sbjct: 323 LEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFA-DSLNL------------------- 362
Query: 299 GALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 350
+L+ + +M+LYIR +L+++ N TCL L+++P+ ++ +I K L+
Sbjct: 363 -SLVDYVFTAMLLYIRDALISS-NYQTCLGLLMHYPIIGDIHSLILKALFLR 412
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum
GN=tbc1d5A PE=1 SV=1
Length = 1173
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/389 (23%), Positives = 176/389 (45%), Gaps = 64/389 (16%)
Query: 1 MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 60
+D+PLSQ+ DS W +FF + ++ + D+SR YP G +F+ Q ++ RIL ++ +
Sbjct: 448 IDDPLSQSEDSLWNQFFDNENAQREISHDISRTYPGLG-FFERLDIQDIMIRILFIFSKQ 506
Query: 61 HPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDK-FDGLSFHENDLTYNFDF 119
+P+ Y QGM+E+LAP+LY ++ D + + D F+ K +D + + FD
Sbjct: 507 YPKIKYLQGMNEILAPILYSVYNDSHWFN-----NRDVFSKKNYDKKNKQYEHFDFVFDQ 561
Query: 120 KKFLDSMED---EIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSE-KFME 175
+ D D + ++ N+ + +G +G L + ++ E
Sbjct: 562 QYQQDYYPDGPIQYPTNSNNFNGAG---------SSGSGGSVSRKDGGIGAFLRDPQYFE 612
Query: 176 HDAYCMFDALM--VGSQGSVSMADFFAHSHADGSLTCL--------------LPVIEASS 219
HD+Y +F++LM VG + + G L + V++
Sbjct: 613 HDSYFIFESLMTIVGKWFTSPPSSPQPPPRVQGQFKKLYDLSERDASDQAVNIVVVDQCL 672
Query: 220 AMYHLLSVADSSLHSHLVE-LGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSK 278
M+ L + L+S+L + LG+EP + LRW+R++ + F L LLI+WD IF ++
Sbjct: 673 RMFEDLKFIEPQLYSYLKQDLGIEPHLYSLRWIRIILAQVFPLDSLLILWDSIFKESVTE 732
Query: 279 VNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNIN 338
+ + ++M++ I+ ++ ++ + CLQ L ++PV +
Sbjct: 733 ----------------------FLPYICLTMLIMIKDQIIE-KDYSECLQVLFHYPVTQD 769
Query: 339 LKKIIGKTKS----LQALALDANLSSSSP 363
+ ++ S +Q N+ S+P
Sbjct: 770 MPMLLNTAYSVREKIQMAKQQYNIPISTP 798
>sp|Q54TA5|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum
GN=tbc1d5B PE=3 SV=1
Length = 1016
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 3 NPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHP 62
+PLSQN DS W +FF++ + +K++ DL R +P++ +F P + M+ IL ++ +
Sbjct: 335 DPLSQNDDSPWNKFFKNLDTQKIIKIDLERTHPDND-FFSNPVIREMMATILFVYSKTNG 393
Query: 63 EFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHEND 112
YRQGMHELLAP++Y+ + + ++ D + + E+D
Sbjct: 394 IISYRQGMHELLAPIIYLYNQEYSSYKKLDENSSSTLVDFIYNIKYLEHD 443
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 224 LLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDT 283
LL D L+ HL L +EPQ + LRW+R+LFGREF D+L IWD +FA + +
Sbjct: 585 LLKQKDFELYQHLDSLDIEPQIYLLRWIRLLFGREFHFDDVLNIWDALFAYGENLI---- 640
Query: 284 EDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFP 334
LI +SM+ YIR LL ++ + L+R+ +P
Sbjct: 641 -----------------LIDYFCISMLTYIREHLLKSD-SIYALKRIYKYP 673
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3
Length = 400
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 221 MYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVN 280
+Y L D L+ L E ++PQ+F RWL +L +EF L D++ IWD +FA D+
Sbjct: 291 VYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDN---- 346
Query: 281 KDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLL-NFPVNINL 339
R + + +M++ IR LL E T RLL ++P+ ++
Sbjct: 347 -----------------RFDFLLLVCCAMLMLIREQLL--EGDFTVNMRLLQDYPIT-DV 386
Query: 340 KKIIGKTKSLQ 350
+I+ K K LQ
Sbjct: 387 CQILQKAKELQ 397
Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 2 DNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQ 42
D+PL+ NPDS W +F+ E+ +D+D+ RL P+ S+FQ
Sbjct: 99 DHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPD-ISFFQ 138
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 45 GCQG---MLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTD 101
GC+ ++ RIL ++ +P Y QGM+E++ PL Y D + E + F
Sbjct: 203 GCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFC- 261
Query: 102 KFDGLSFHENDLTYNFDFKKFLDSMED-EIGSHGNSVKVRSVDELDPEIQTIVQLSD--- 157
F L D F+ S++D + G KV S + D +++ ++L +
Sbjct: 262 -FTNLMAEIRD--------NFIKSLDDSQCGITYKMEKVYSTLK-DKDVELYLKLQEQNI 311
Query: 158 --AYGAEGELGIVLSEKFMEHDAYCMFDALM 186
+ A L ++LS++F+ D ++D+L
Sbjct: 312 KPQFFAFRWLTLLLSQEFLLPDVIRIWDSLF 342
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1
Length = 400
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 221 MYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVN 280
+Y L D L+ L E ++PQ+F RWL +L +EF L D++ IWD +FA
Sbjct: 291 VYSTLKDKDVELYLKLQEQSIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFAD------ 344
Query: 281 KDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLL-NFPVNINL 339
G+ F L + +M++ IR LL E T RLL ++P+ ++
Sbjct: 345 -------GNRFDFL--------LLVCCAMLILIREQLL--EGDFTVNMRLLQDYPIT-DV 386
Query: 340 KKIIGKTKSLQ 350
+I+ K K LQ
Sbjct: 387 CQILQKAKELQ 397
Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 2 DNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQ 42
D+PL+ NPDS W +F+ E+ +D+D+ RL P+ S+FQ
Sbjct: 99 DHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDI-SFFQ 138
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 45 GCQG---MLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTD 101
GC+ ++ RIL ++ +P Y QGM+E++ PL Y D + E + F
Sbjct: 203 GCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFC- 261
Query: 102 KFDGLSFHENDLTYNFDFKKFLDSMED-EIGSHGNSVKVRSVDELDPEIQTIVQLSD--- 157
F L D F+ S++D + G KV S + D +++ ++L +
Sbjct: 262 -FTNLMAEIRD--------NFIKSLDDSQCGITYKMEKVYSTLK-DKDVELYLKLQEQSI 311
Query: 158 --AYGAEGELGIVLSEKFMEHDAYCMFDALM 186
+ A L ++LS++F+ D ++D+L
Sbjct: 312 KPQFFAFRWLTLLLSQEFLLPDVIRIWDSLF 342
>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4
SV=4
Length = 619
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 22/191 (11%)
Query: 167 IVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHS---HADGSLTCLLPVIEASSAMYH 223
++ ++ E+ C DA + +Q V + D + + +D + L+ S
Sbjct: 282 VLATDPTYENYYLCECDAFFLFTQMMVQVRDLYEKTLDHDSDHGIHFLM------SKFTE 335
Query: 224 LLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDT 283
L D L +L E + P Y+ RW L +EF L D++ +WD I A D K
Sbjct: 336 RLKKYDYELWENLEEKQIHPTYYSFRWFTCLLSQEFPLPDVIRLWDSIIA-DQMKARLFG 394
Query: 284 EDDAGSGFGILSSPRGA--LIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKK 341
++D G GA + S+++ +R S+L A + +LL N+++ K
Sbjct: 395 KNDDGFN--------GAYDFLMDFCCSILIELRESILERNFADSI--KLLQAHFNVDMPK 444
Query: 342 IIGKTKSLQAL 352
++ T LQ L
Sbjct: 445 LLNLTFELQHL 455
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 52 RILLLWCLRHPEFGYRQGMHELLAPLLYVLHVD 84
RIL ++ +P GY QGM+E+LAPL YVL D
Sbjct: 254 RILFIYAKLNPGIGYVQGMNEILAPLYYVLATD 286
>sp|Q08484|GYP1_YEAST GTPase-activating protein GYP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GYP1 PE=1 SV=1
Length = 637
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 26 VDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDV 85
++ D+ R P H +Q Q L+RIL LW +RHP GY QG+++L+ P +
Sbjct: 337 IEIDIPRTNP-HIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEY 395
Query: 86 ERLSQV 91
SQ+
Sbjct: 396 LPPSQI 401
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 214 VIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFA 273
++ + L+ D+ L++H VE F RW+ L REF +G ++ +WD +
Sbjct: 447 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 506
Query: 274 SDSSKV 279
S +V
Sbjct: 507 ETSQEV 512
>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3
Length = 505
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 31/119 (26%)
Query: 41 FQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVL----------HVDVERLSQ 90
FQ P Q + RIL +W +RHP GY QG+++L+ P V + DV LSQ
Sbjct: 282 FQQPLVQEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQ 341
Query: 91 --VRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDE--IGSHGNSVKVRSVDEL 145
+R+ D F + K LD ++D G KV++++EL
Sbjct: 342 DMLRSIEADSF-----------------WCMSKLLDGIQDNYTFAQPGIQKKVKALEEL 383
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 174 MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS-SAMYHLLSVADSSL 232
+E D++ L+ G Q + + A P I+ A+ L+S D +
Sbjct: 347 IEADSFWCMSKLLDGIQDNYTFAQ---------------PGIQKKVKALEELVSRIDEQV 391
Query: 233 HSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWD 269
H+H VE F RW+ L RE L + +WD
Sbjct: 392 HNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWD 428
>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B
PE=2 SV=1
Length = 505
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 31/119 (26%)
Query: 41 FQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVL----------HVDVERLSQ 90
FQ P Q + RIL +W +RHP GY QG+++L+ P V + DV LSQ
Sbjct: 282 FQQPLVQEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQ 341
Query: 91 --VRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDE--IGSHGNSVKVRSVDEL 145
+R+ D F + K LD ++D G KV++++EL
Sbjct: 342 DMLRSIEADSF-----------------WCMSKLLDGIQDNYTFAQPGIQKKVKALEEL 383
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 174 MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS-SAMYHLLSVADSSL 232
+E D++ L+ G Q + + A P I+ A+ L+S D +
Sbjct: 347 IEADSFWCMSKLLDGIQDNYTFAQ---------------PGIQKKVKALEELVSRIDEQV 391
Query: 233 HSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWD 269
H+H VE F RW+ L RE L + +WD
Sbjct: 392 HNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWD 428
>sp|Q8R5A6|TB22A_MOUSE TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=2 SV=3
Length = 516
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 24 KMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHV 83
+ + D+ R+ PE + P + RIL +W +RHP GY QG+++L+ P V
Sbjct: 277 RQIHIDIPRMSPE--ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFIC 334
Query: 84 DVERLSQVRNEHEDHFTDKFDGLSFHENDL------TYNFDFKKFLDSMEDE--IGSHGN 135
+ + ED DK D S L TY + K LD ++D G
Sbjct: 335 EY-------TDRED--VDKVDVSSVPAEVLRNIEADTY-WCMSKLLDGIQDNYTFAQPGI 384
Query: 136 SVKVRSVDEL 145
+KV+ ++EL
Sbjct: 385 QMKVKMLEEL 394
>sp|O59737|GYP1_SCHPO GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=gyp1 PE=3 SV=1
Length = 514
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 41 FQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVL 81
+Q P Q ML RIL +W RHP GY QG+ +L+ P + V
Sbjct: 290 YQNPLTQRMLERILYVWASRHPASGYVQGISDLVTPFIQVF 330
Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 174 MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLH 233
+E DAY L+ G Q D + H+ + + + L D L
Sbjct: 356 IEADAYWCLSKLLDGIQ------DNYIHAQPG--------IRRQVNNLRELTLRIDEPLV 401
Query: 234 SHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFA 273
HL GV+ F RW+ L RE S+ +++ +WD A
Sbjct: 402 KHLQMEGVDFLQFSFRWMNCLLMRELSISNIIRMWDTYMA 441
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2
Length = 648
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 25 MVDQDLSRLYPEHGSY--FQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLH 82
++++D+SR + Y + PG G+L ILL +C+ H + GY QGM +LL+P+LYV+
Sbjct: 374 LIERDVSRTDRTNKFYEGPENPGL-GLLNDILLTYCMYHFDLGYVQGMSDLLSPILYVIQ 432
Query: 83 VDVE 86
+V+
Sbjct: 433 NEVD 436
>sp|Q8WUA7|TB22A_HUMAN TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2
Length = 517
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 24 KMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVL-- 81
+ + D+ R+ PE + P + RIL +W +RHP GY QG+++L+ P V
Sbjct: 278 RQIHIDIPRMSPE--ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFIC 335
Query: 82 -HVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDE--IGSHGNSVK 138
+++ E + V D + L E D TY + K LD ++D G +K
Sbjct: 336 EYIEAEEVDTV-----DVSGVPAEVLCNIEAD-TY-WCMSKLLDGIQDNYTFAQPGIQMK 388
Query: 139 VRSVDEL 145
V+ ++EL
Sbjct: 389 VKMLEEL 395
>sp|Q95KI1|TB22A_MACFA TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis
GN=TBC1D22A PE=2 SV=2
Length = 497
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 24 KMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVL-- 81
+ + D+ R+ PE + P + RIL +W +RHP GY QG+++L+ P V
Sbjct: 258 RQIHIDIPRMSPE--ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFIC 315
Query: 82 -HVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDE--IGSHGNSVK 138
+++ E + V D + L E D TY + K LD ++D G +K
Sbjct: 316 EYIEAEEVDTV-----DVSGVPAEVLRNIEAD-TY-WCMSKLLDGIQDNYTFAQPGIQMK 368
Query: 139 VRSVDEL 145
V+ ++EL
Sbjct: 369 VKMLEEL 375
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2
Length = 645
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 25 MVDQDLSRLYPEHGSYFQTPGCQGM--LRRILLLWCLRHPEFGYRQGMHELLAPLLYVLH 82
++++D+SR +++ P G+ L ILL +C+ H + GY QGM +LL+P+L+V+
Sbjct: 374 LIERDVSRT-DRTNKFYEGPENPGLSLLHDILLTYCMYHFDLGYVQGMSDLLSPILFVVQ 432
Query: 83 VDVE 86
+V+
Sbjct: 433 NEVD 436
>sp|P07751|SPTN1_CHICK Spectrin alpha chain, non-erythrocytic 1 OS=Gallus gallus GN=SPTAN1
PE=1 SV=3
Length = 2477
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 334 PVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPL 393
P NI L K++ K + QA +A L +++ GV NP++ RG+ SE + + L
Sbjct: 1582 PTNIQLSKLLSKHQKHQAF--EAELHANADRIRGVIEMGNPLIERGACAGSED-AVKARL 1638
Query: 394 NVVPDSYWE 402
+ D WE
Sbjct: 1639 AALADQ-WE 1646
>sp|P38676|GUX1B_NEUCR Exoglucanase 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=cbh-1 PE=3 SV=1
Length = 516
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 607 SGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSSSKG 666
S KF +F ++SAG+ K K+ N++SN G S CKS ++ G
Sbjct: 294 SSKFTVVTQFIKDSAGDLAEIKAFYVQNGKVIENSQSNVDGVSGNSITQSFCKSQKTAFG 353
Query: 667 ETVDQNVMGTLKNLGQSMLEHIQVTFSF 694
+ D N G LK +G+++ + + + S
Sbjct: 354 DIDDFNKKGGLKQMGKALAQAMVLVMSI 381
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 404 KWRDLHKAEEQRHDS-SGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIR 462
K RD + ++Q D G+ + +K R+ E+VK R+ E V K +
Sbjct: 704 KGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLE 763
Query: 463 RSLLEDLSKELGFEEDSEKDGILEVSTEKDQ 493
+ +D KEL + + +D LE EKDQ
Sbjct: 764 KCREKDQDKELEKDREKNQDKELEKGREKDQ 794
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 263,153,927
Number of Sequences: 539616
Number of extensions: 11241265
Number of successful extensions: 42314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 617
Number of HSP's that attempted gapping in prelim test: 36294
Number of HSP's gapped (non-prelim): 3497
length of query: 710
length of database: 191,569,459
effective HSP length: 125
effective length of query: 585
effective length of database: 124,117,459
effective search space: 72608713515
effective search space used: 72608713515
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)