Query 005176
Match_columns 710
No_of_seqs 235 out of 1379
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 19:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1091 Ypt/Rab-specific GTPas 100.0 5.9E-94 1.3E-98 781.6 21.1 501 1-699 83-590 (625)
2 KOG4567 GTPase-activating prot 100.0 2E-46 4.2E-51 389.0 16.9 237 2-353 100-363 (370)
3 KOG1092 Ypt/Rab-specific GTPas 100.0 9.8E-36 2.1E-40 318.3 15.0 239 18-358 239-481 (484)
4 smart00164 TBC Domain in Tre-2 100.0 3.8E-32 8.3E-37 261.8 15.6 152 20-276 44-198 (199)
5 KOG2058 Ypt/Rab GTPase activat 100.0 1.2E-31 2.7E-36 291.7 16.9 188 21-335 195-384 (436)
6 PF00566 RabGAP-TBC: Rab-GTPas 100.0 1.7E-30 3.7E-35 250.0 18.6 174 17-318 41-214 (214)
7 COG5210 GTPase-activating prot 100.0 1.8E-29 4E-34 279.0 18.1 186 21-333 255-442 (496)
8 KOG1093 Predicted protein kina 100.0 1.6E-28 3.5E-33 270.1 15.4 220 5-352 368-592 (725)
9 KOG2223 Uncharacterized conser 99.9 5.9E-26 1.3E-30 243.9 14.5 195 23-346 356-551 (586)
10 KOG2222 Uncharacterized conser 99.9 4E-24 8.7E-29 231.3 12.4 241 22-395 211-458 (848)
11 KOG2224 Uncharacterized conser 99.9 6E-24 1.3E-28 228.1 11.7 232 25-355 498-734 (781)
12 KOG2197 Ypt/Rab-specific GTPas 99.8 1.8E-21 3.8E-26 216.2 10.0 210 21-357 236-448 (488)
13 KOG4436 Predicted GTPase activ 99.8 4E-19 8.6E-24 201.7 16.2 184 24-335 623-808 (948)
14 KOG4347 GTPase-activating prot 99.8 2.4E-19 5.3E-24 200.6 10.5 183 22-334 243-425 (671)
15 KOG2595 Predicted GTPase activ 99.8 1.1E-18 2.3E-23 184.4 13.3 201 23-352 97-302 (395)
16 KOG1102 Rab6 GTPase activator 99.8 8.4E-19 1.8E-23 190.6 8.6 181 24-335 187-369 (397)
17 KOG2221 PDZ-domain interacting 99.3 1.1E-12 2.4E-17 133.0 5.3 126 20-251 140-267 (267)
18 KOG3636 Uncharacterized conser 99.3 9.5E-12 2.1E-16 135.7 12.2 135 175-348 130-269 (669)
19 KOG4436 Predicted GTPase activ 98.8 2.7E-08 5.8E-13 114.9 11.0 198 24-350 229-440 (948)
20 KOG2801 Probable Rab-GAPs [Int 97.7 0.00046 1E-08 73.7 12.2 107 220-351 182-294 (559)
21 KOG1648 Uncharacterized conser 97.2 1.9E-05 4.2E-10 88.2 -5.1 56 24-81 608-663 (813)
22 PF14961 BROMI: Broad-minded p 96.8 0.0084 1.8E-07 73.5 12.3 122 206-351 1154-1278(1296)
No 1
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-94 Score=781.65 Aligned_cols=501 Identities=52% Similarity=0.804 Sum_probs=430.3
Q ss_pred CCCCCCCCCCCchhhhcCChHHHHHHHHhhchhCCCCccCCCChhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHH
Q 005176 1 MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYV 80 (710)
Q Consensus 1 ~dnPLs~~~~S~W~~~frd~ElekqIdkDL~RTfpe~~~~Fq~~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyV 80 (710)
|||||||+++|+|++||+|+|++++|++||+||||+++.|||.+.+|.||+|||++||+.||++||+||||||+||++||
T Consensus 83 idnPLSq~~~S~W~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fV 162 (625)
T KOG1091|consen 83 IDNPLSQNPQSVWNRFFRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFV 162 (625)
T ss_pred cCCccccCCCchhhhhcCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccccccccccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccc
Q 005176 81 LHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYG 160 (710)
Q Consensus 81 l~~D~~~l~ev~~~yed~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg 160 (710)
++.|++.|.|+++. .||.+.|+|.|.+|+|.+.+.... .++++.+|.++|+||
T Consensus 163 l~~D~q~l~h~se~-------~~~~l~f~E~d~iy~~~y~k~d~d--------------------n~~lqs~lmls~~~~ 215 (625)
T KOG1091|consen 163 LHVDNQALLHVSES-------LFDKLGFEERDVIYNFLYLKTDLD--------------------NTELQSVLMLSDEYG 215 (625)
T ss_pred eehhHHHHHHHHHh-------hhhhcCcchhhhhhhHHHHhhhcc--------------------chhHHHHHHhhhccc
Confidence 99999999999874 688999999999999998885321 268999999999999
Q ss_pred cccchhhcccccccHHHHHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhC
Q 005176 161 AEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELG 240 (710)
Q Consensus 161 ~egelg~vLs~k~~EaDAF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elg 240 (710)
.|+|+|+++++++||+|+|++|+++|.+ +|++.+++..+++||..+|+.||.||.++|
T Consensus 216 ~e~e~g~~~~e~~ie~day~~~d~l~~~----------------------l~~v~e~~~~~~~lL~~~D~~Lh~HL~~l~ 273 (625)
T KOG1091|consen 216 YEEELGIVLSEKLIEHDAYVMFDALMPG----------------------LPPVFEANFAQYHLLAKVDKSLHSHLVELG 273 (625)
T ss_pred cccCcceecCcccCCcCcccchhhhccc----------------------chhHHHHhhhhhhhhhhccHHHHHHHHhcC
Confidence 9999999999999999999999999874 688999999999999999999999999999
Q ss_pred CCcchhhhHHHHHhhCcCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcC
Q 005176 241 VEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLAT 320 (710)
Q Consensus 241 Iep~lFalrWfltLFaREFpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~ 320 (710)
|+||+|.+||+++||+||||+.++|.|||.+ .||.+||+.++.||+||||+++|+.||+.
T Consensus 274 i~pqifgiRWlRlLFGREfpL~dLLiVWD~~--------------------l~~d~pr~~Lv~~m~VsmLL~IRd~Llss 333 (625)
T KOG1091|consen 274 IEPQIFGIRWLRLLFGREFPLQDLLIVWDHV--------------------LIFDSPRGILVACMFVSMLLYIRDSLLSS 333 (625)
T ss_pred CchHHHHHHHHHHHHcchhHHHHHHHHhhhh--------------------hhccCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999932 23456789999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCCCCCCCCCch
Q 005176 321 ENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSY 400 (710)
Q Consensus 321 e~~~e~Lq~L~nfP~~iDv~~LI~kA~~Lq~~~~~~~~~s~~~~~~~~~~~s~~~~~r~~~~~~~s~sp~~p~~~~~~~y 400 (710)
++. .||++|+|||.++|++++|++|+.++. ++.|+..+++|.+.. +.++.+|+...|++|
T Consensus 334 ~~~-tcL~~Lm~yP~~~Dv~~~iekAl~l~~----------------~~~K~n~~p~~~~~n---sf~~~s~~~isp~~~ 393 (625)
T KOG1091|consen 334 EYQ-TCLQYLMNYPEIIDVDKFIEKALHLQK----------------LFPKSNAKPARDNSN---SFSDLSPVGISPCSY 393 (625)
T ss_pred cch-hHHHHHhcCCCcCcHHHHHHHHHHHHH----------------hcccccccccCCCcc---cccccccccCChhhh
Confidence 985 599999999999999999999999998 345566778888866 677889999999999
Q ss_pred hhhHHHHHHHHHHhhccccCCCCcc-hhhhhhHHhhhcccccccCCCCcccCCCCccCc-chhhhhhHHHHHhhhCCccc
Q 005176 401 WEGKWRDLHKAEEQRHDSSGKQNQT-QKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSR-SSIRRSLLEDLSKELGFEED 478 (710)
Q Consensus 401 wee~wr~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~ 478 (710)
|+.+||+++++..+....+..+.++ +++.|.. +| +.|+++||++ |++..| +++.|.++++++++++.
T Consensus 394 w~~k~r~~~~~nse~~~~~~sps~~~k~~~~~~-~~--~~r~~~D~S~-----~~~~~k~~~~~R~~~~~~~~~l~t--- 462 (625)
T KOG1091|consen 394 WEGKWRVLPRANSEESSMKISPSPIIKKKPVLQ-MK--LARLTIDPSR-----GSSEAKLSSSPRVLLLDLKEQLST--- 462 (625)
T ss_pred cccccCCCccccccccccccCCCcccccCcHHH-HH--HHHhhcCCcc-----ccccccCCcchhhhhcccccccCC---
Confidence 9999999999998877666666555 6899996 44 5699999999 555555 78999999999998850
Q ss_pred ccccccccccccCCCCchhhhhhhcccccccccccCCccccCCCCCCCCCcccccCCCCCCCCCCCCCCccccccccc-C
Q 005176 479 SEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNENDSEKSSVAS-N 557 (710)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 557 (710)
|.+|...+| +.+.|.+ +
T Consensus 463 --------------------------------------------------------p~~~d~~~~------~~s~v~~~q 480 (625)
T KOG1091|consen 463 --------------------------------------------------------PLSPDEDAN------EASTVSSIQ 480 (625)
T ss_pred --------------------------------------------------------CCCcchhhh------hhhhhhhcc
Confidence 333423332 4455554 7
Q ss_pred CCcccccccCCCC---CCCCCCCCCCCCCCcccCCCCCCcccccchhhhccccccchhhhhcCCCCccccccccCCcccc
Q 005176 558 SSVDENDRQSHTM---PESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATE 634 (710)
Q Consensus 558 ~~~~~~~~~~~~~---~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~ 634 (710)
.|..+.+..++++ +.+.||+|+.++.+.. -.-.-++|+++|+||||||+||+..+|||++...
T Consensus 481 ~s~lq~~l~~kd~~~~~~~~~l~i~~~~~~~~----------~~~~~~~k~~~~~~q~~~~l~~~l~~~etk~~~~---- 546 (625)
T KOG1091|consen 481 PSKLQEDLSTKDQVTSQVNGPLEISRTLDGKS----------VLITKEDKLLSGLFQRLRKLGRTLSAEETKKLNT---- 546 (625)
T ss_pred hHHHHhhhcccchhhhhcCCcccccccCCcch----------hhhHHHHHhhhHHHHHHHHhCchhcccccccCCC----
Confidence 7777777777654 5689999999876610 0011178999999999999999999999822211
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCC-CCCcccchhHHHhHHhhhHHHHHHHHHHHHHHhhhh
Q 005176 635 TKISANNESNQSNSKGASSNDGSCKSSSS-SKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLIC 699 (710)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~g~sml~~i~~i~~~~~~~~ 699 (710)
-|++..+ ...++.||+.+.|+||+||+|++||++||+||+|..
T Consensus 547 ----------------------~~s~~~~~~~s~~~~~~~~~~~~~~gq~~~~h~~~~~~~~~~~p 590 (625)
T KOG1091|consen 547 ----------------------GCSPPKHASSSGDTDQGSATTLKNLGQSMLEHIEMIESVFEQEP 590 (625)
T ss_pred ----------------------CCCCCCcccccCCcccccccccccCchhHHHHHHHHHHhhccCc
Confidence 1333332 223377999999999999999999999999999996
No 2
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2e-46 Score=388.96 Aligned_cols=237 Identities=31% Similarity=0.598 Sum_probs=209.2
Q ss_pred CCCCCCCCCCchhhhcCChHHHHHHHHhhchhCCCCccCCCChh---------------------------HHHHHHHHH
Q 005176 2 DNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPG---------------------------CQGMLRRIL 54 (710)
Q Consensus 2 dnPLs~~~~S~W~~~frd~ElekqIdkDL~RTfpe~~~~Fq~~~---------------------------~q~~LrRIL 54 (710)
|+||+.+|.|.|+.||++.|+..||++||.||+|+. ++|+.+. ......|||
T Consensus 100 dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi-~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~eril 178 (370)
T KOG4567|consen 100 DHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDI-SFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERIL 178 (370)
T ss_pred cCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcch-HhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHH
Confidence 799999999999999999999999999999999998 8887532 123468999
Q ss_pred HHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhccccccccccccCCCccccCccccccccccccccchhccccCC
Q 005176 55 LLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHG 134 (710)
Q Consensus 55 ~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g 134 (710)
++||+.||.||||||||+|+|||+|||..|...
T Consensus 179 fiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~----------------------------------------------- 211 (370)
T KOG4567|consen 179 FIYAKLNPGIGYVQGMNEILAPIYYVFANDPDE----------------------------------------------- 211 (370)
T ss_pred HHHhhcCCcchHHhhhHHHhhhhheeeccCCch-----------------------------------------------
Confidence 999999999999999999999999999765320
Q ss_pred CCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHHHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHH
Q 005176 135 NSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPV 214 (710)
Q Consensus 135 ~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDAF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i 214 (710)
| ...++|+|||+||..||.+. +|+|..... .|.. ||
T Consensus 212 -------------e---------------------~~~~aEaDaFFCF~~LMsei------rDnf~k~LD-dS~~---GI 247 (370)
T KOG4567|consen 212 -------------E---------------------NRAYAEADAFFCFTQLMSEI------RDNFIKTLD-DSVG---GI 247 (370)
T ss_pred -------------h---------------------hHHhhhhhHHHHHHHHHHHH------HHHHHHhcc-cccc---ch
Confidence 0 12356999999999999985 589987544 4443 46
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccc
Q 005176 215 IEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGIL 294 (710)
Q Consensus 215 ~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaREFpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~ 294 (710)
...+..+..+|+.+|-+||.||++.+|.|++|+|||+.+||++|||++++++|||.+|+...
T Consensus 248 ~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~------------------ 309 (370)
T KOG4567|consen 248 HFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ------------------ 309 (370)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh------------------
Confidence 66788999999999999999999999999999999999999999999999999999999865
Q ss_pred cCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 005176 295 SSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALA 353 (710)
Q Consensus 295 ~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nfP~~iDv~~LI~kA~~Lq~~~ 353 (710)
|++|++++|+|||+..|..||+.++ +.||++||++|+ +|+.+++..|.+|+...
T Consensus 310 ---rfd~Ll~iCcsmlil~Re~il~~DF-~~nmkLLQ~yp~-tdi~~~l~~A~~Lr~~k 363 (370)
T KOG4567|consen 310 ---RFDFLLYICCSMLILVRERILEGDF-TVNMKLLQNYPT-TDISKMLAVADSLRDKK 363 (370)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHhcch-HHHHHHHhcCCC-CCHHHHHHHHHHHHhcc
Confidence 4589999999999999999999986 899999999995 99999999999998643
No 3
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-36 Score=318.34 Aligned_cols=239 Identities=27% Similarity=0.458 Sum_probs=203.3
Q ss_pred CChHHHHHHHHhhchhCCCCccCCCChhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccc
Q 005176 18 RSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHED 97 (710)
Q Consensus 18 rd~ElekqIdkDL~RTfpe~~~~Fq~~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed 97 (710)
.+.+..+||.-|+.|+.|.. ++|+.+..|++|.|||+.||++||..||+||+++++.|+|.+|..+
T Consensus 239 ~~~d~~rQI~id~prm~p~~-~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e------------- 304 (484)
T KOG1092|consen 239 EDQDTWRQIPIDIPRMNPHI-PLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSE------------- 304 (484)
T ss_pred ccCccccccccCCCCCCccc-cchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHh-------------
Confidence 35567799999999999997 9999999999999999999999999999999999999999998642
Q ss_pred ccccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHH
Q 005176 98 HFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHD 177 (710)
Q Consensus 98 ~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaD 177 (710)
++... ++|.++.+. .|+.|.. .-+|+|
T Consensus 305 ~l~~~-------~~~~~~d~~-------------------------~l~~E~~---------------------~~iEAD 331 (484)
T KOG1092|consen 305 YLGPI-------MDVESIDMS-------------------------LLPAENA---------------------EDIEAD 331 (484)
T ss_pred hcCcc-------ccccccchh-------------------------hccHHHH---------------------hhhhhh
Confidence 11110 223333111 1222222 235999
Q ss_pred HHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCc
Q 005176 178 AYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGR 257 (710)
Q Consensus 178 AF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaR 257 (710)
||||+..|+.+++ |.|.. ..|||++....|.+|++.+|+.||+||+++||+...|||||+.|||.|
T Consensus 332 syWClskLLD~IQ------DNYtf--------aQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmR 397 (484)
T KOG1092|consen 332 AYWCLSKLLDGIQ------DNYTF--------AQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMR 397 (484)
T ss_pred HHHHHHHHHHHhh------hhhhh--------cChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 9999999999976 66764 579999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcCCC--
Q 005176 258 EFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV-- 335 (710)
Q Consensus 258 EFpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nfP~-- 335 (710)
|||+..++||||.|+++.. +|. .|++|||+|.|+..+++|++.++ .++|.+|||+|+
T Consensus 398 E~pl~~~iRlWDTY~aE~d-------------gf~-------~FhvYvcAAFL~kW~~eL~e~DF-Q~~ilfLQnlPT~~ 456 (484)
T KOG1092|consen 398 EFPLRCTIRLWDTYLAEPD-------------GFN-------EFHVYVCAAFLLKWSSELMENDF-QELILFLQNLPTHN 456 (484)
T ss_pred hccchhHHHHHHHhhcCcc-------------chH-------HHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhcCCCCC
Confidence 9999999999999999965 232 68999999999999999997774 899999999997
Q ss_pred --CCCHHHHHHHHHHHHHHHhhcCC
Q 005176 336 --NINLKKIIGKTKSLQALALDANL 358 (710)
Q Consensus 336 --~iDv~~LI~kA~~Lq~~~~~~~~ 358 (710)
+.+++-|+..|+.++..+.+++.
T Consensus 457 W~d~eIellLseA~~~k~~f~da~~ 481 (484)
T KOG1092|consen 457 WSDREIELLLSEAFRLKSVFSDAPN 481 (484)
T ss_pred ccHHHHHHHHHHHHHHHHHHccchh
Confidence 48999999999999999887654
No 4
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.98 E-value=3.8e-32 Score=261.83 Aligned_cols=152 Identities=38% Similarity=0.632 Sum_probs=136.8
Q ss_pred hHHHHHHHHhhchhCCCCccCCCCh--hHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccc
Q 005176 20 AELEKMVDQDLSRLYPEHGSYFQTP--GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHED 97 (710)
Q Consensus 20 ~ElekqIdkDL~RTfpe~~~~Fq~~--~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed 97 (710)
..+.++|++||.||+|++ .+|+.+ ..++.|+|||.+||.+||++||+||||+|||+||+++..
T Consensus 44 ~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~-------------- 108 (199)
T smart00164 44 KSIVHQIEKDLRRTFPEH-SFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPD-------------- 108 (199)
T ss_pred hhhHHHHhcccCCCCCCc-hhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCC--------------
Confidence 346799999999999999 889864 489999999999999999999999999999999987521
Q ss_pred ccccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHH
Q 005176 98 HFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHD 177 (710)
Q Consensus 98 ~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaD 177 (710)
|++
T Consensus 109 -----------------------------------------------------------------------------e~~ 111 (199)
T smart00164 109 -----------------------------------------------------------------------------EED 111 (199)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 789
Q ss_pred HHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHh-hCCCcchhhhHHHHHhhC
Q 005176 178 AYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVE-LGVEPQYFGLRWLRVLFG 256 (710)
Q Consensus 178 AF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~e-lgIep~lFalrWfltLFa 256 (710)
|||||.+||.... ..||.. +++++...+..+..+|+.++|+||.||.+ +|+++..|+++|+++||+
T Consensus 112 af~~~~~l~~~~~-----~~~~~~--------~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~ 178 (199)
T smart00164 112 AFWCLVKLMERYG-----PNFYLP--------DMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFA 178 (199)
T ss_pred HHHHHHHHHHHhC-----cccCCC--------ChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 9999999999864 244543 57788999999999999999999999996 999999999999999999
Q ss_pred cCCChHHHHHHHHHHhccCC
Q 005176 257 REFSLGDLLIIWDEIFASDS 276 (710)
Q Consensus 257 REFpLe~vLrIWD~ifa~g~ 276 (710)
++||++.++||||.||++|+
T Consensus 179 ~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 179 RELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred hhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999985
No 5
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-31 Score=291.70 Aligned_cols=188 Identities=26% Similarity=0.411 Sum_probs=170.3
Q ss_pred HHHHHHHHhhchhCCCCccCCCChh--HHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhccccccc
Q 005176 21 ELEKMVDQDLSRLYPEHGSYFQTPG--CQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDH 98 (710)
Q Consensus 21 ElekqIdkDL~RTfpe~~~~Fq~~~--~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~ 98 (710)
...++|+.||.||||.+...|..++ ++..|+|||++||.+||.||||||||+|||+||+++..
T Consensus 195 ~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~--------------- 259 (436)
T KOG2058|consen 195 PVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPS--------------- 259 (436)
T ss_pred hHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCC---------------
Confidence 5889999999999999866777765 48999999999999999999999999999999998731
Q ss_pred cccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHH
Q 005176 99 FTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDA 178 (710)
Q Consensus 99 f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDA 178 (710)
|++|
T Consensus 260 ----------------------------------------------------------------------------EE~A 263 (436)
T KOG2058|consen 260 ----------------------------------------------------------------------------EEDA 263 (436)
T ss_pred ----------------------------------------------------------------------------hHHH
Confidence 7899
Q ss_pred HHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcC
Q 005176 179 YCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGRE 258 (710)
Q Consensus 179 F~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaRE 258 (710)
||||..++.... ..||.+ .|.+.+....+|..||+..+|+|+.||..+|+...+|++.||+|+|...
T Consensus 264 FW~Lv~iie~~l-----p~Yyt~--------nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~ 330 (436)
T KOG2058|consen 264 FWMLVALIENYL-----PRYYTP--------NLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDI 330 (436)
T ss_pred HHHHHHHHHHhc-----hhhcCc--------hhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhccc
Confidence 999999999874 457765 4667777888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcCCC
Q 005176 259 FSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 335 (710)
Q Consensus 259 FpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nfP~ 335 (710)
.|.+.+|||||.+|++|. .+++.+|+|++...++.||......++++++..+..
T Consensus 331 lP~~t~LrIwD~~f~eGs-----------------------kvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~ 384 (436)
T KOG2058|consen 331 LPSETVLRIWDCLFYEGS-----------------------KVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTK 384 (436)
T ss_pred ccHHHHHHHHHHHHhccc-----------------------HHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999997 578899999999999999999998888888876664
No 6
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.97 E-value=1.7e-30 Score=250.02 Aligned_cols=174 Identities=29% Similarity=0.555 Sum_probs=150.4
Q ss_pred cCChHHHHHHHHhhchhCCCCccCCCChhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhccccc
Q 005176 17 FRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHE 96 (710)
Q Consensus 17 frd~ElekqIdkDL~RTfpe~~~~Fq~~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~ye 96 (710)
-.+.+..++|++||.||++++ ..++.+..+..|.|||.+|+.++|++||+|||++|++++++++..
T Consensus 41 ~~~~~~~~~I~~Dv~rt~~~~-~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~------------- 106 (214)
T PF00566_consen 41 KLDNKIFEQIDKDVNRTFPNS-FLFKNEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLD------------- 106 (214)
T ss_dssp STCHTCHHHHHHHHCTSSTSC-CCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSH-------------
T ss_pred cccchHHHHHHHhhhhhcccc-hhhhhcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhccc-------------
Confidence 445666899999999999966 788999999999999999999999999999999999999966431
Q ss_pred cccccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHH
Q 005176 97 DHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEH 176 (710)
Q Consensus 97 d~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~Ea 176 (710)
|+
T Consensus 107 ------------------------------------------------------------------------------e~ 108 (214)
T PF00566_consen 107 ------------------------------------------------------------------------------EE 108 (214)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------cc
Confidence 67
Q ss_pred HHHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhC
Q 005176 177 DAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFG 256 (710)
Q Consensus 177 DAF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFa 256 (710)
+|||||.++|.. .+.++|.. +.+++...+..+..+|+.++|+||.||.+.|+++..|+++|++++|+
T Consensus 109 ~af~~~~~l~~~-----~~~~~~~~--------~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~ 175 (214)
T PF00566_consen 109 EAFWCFVQLLNY-----YLPDFFQP--------NFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFS 175 (214)
T ss_dssp HHHHHHHHHHTH-----HGGGGTST--------THHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTT
T ss_pred chhccccchhcc-----cccccccc--------cccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcC
Confidence 799999999932 24577765 45778889999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHh
Q 005176 257 REFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLL 318 (710)
Q Consensus 257 REFpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL 318 (710)
+.+|.+.++|||| ++.+|.+ .+++++++|||...|++||
T Consensus 176 ~~l~~~~~~~lwD-~l~~g~~----------------------~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 176 RSLPFDDVLRLWD-FLLEGYK----------------------FFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp TTS-HHHHHHHHH-HHHHCTT----------------------HHHHHHHHHHHHHTHHHHH
T ss_pred CcCCHHHHHHHHH-HHHcCCC----------------------cHHHHHHHHHHHHHHHHhC
Confidence 9999999999999 6667652 2388899999999999987
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.96 E-value=1.8e-29 Score=279.00 Aligned_cols=186 Identities=33% Similarity=0.523 Sum_probs=164.8
Q ss_pred HHHHHHHHhhchhCCCCccCCCChhHHHH--HHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhccccccc
Q 005176 21 ELEKMVDQDLSRLYPEHGSYFQTPGCQGM--LRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDH 98 (710)
Q Consensus 21 ElekqIdkDL~RTfpe~~~~Fq~~~~q~~--LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~ 98 (710)
++..+|++||.||+|.+ ..|+....+.. |+|||.+|+.+||++||||||++|+|+||+++..
T Consensus 255 ~~~~~i~~Dl~rt~~~~-~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~--------------- 318 (496)
T COG5210 255 EIISQIEKDLSRTFPDN-SLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLES--------------- 318 (496)
T ss_pred HHHHHHHcccccccccc-ccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhh---------------
Confidence 57899999999999999 88988876666 9999999999999999999999999999999731
Q ss_pred cccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHH
Q 005176 99 FTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDA 178 (710)
Q Consensus 99 f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDA 178 (710)
|++|
T Consensus 319 ----------------------------------------------------------------------------Ee~A 322 (496)
T COG5210 319 ----------------------------------------------------------------------------EEQA 322 (496)
T ss_pred ----------------------------------------------------------------------------hHHH
Confidence 7889
Q ss_pred HHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcC
Q 005176 179 YCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGRE 258 (710)
Q Consensus 179 F~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaRE 258 (710)
||||+.||...+ +..+|.. +++|+...+..+..+++.++|+||.||...|+....|+++||+++|.++
T Consensus 323 F~~l~~L~~~~~----l~~~~~~--------~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~ 390 (496)
T COG5210 323 FWCLVKLLKNYG----LPGYFLK--------NLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVRE 390 (496)
T ss_pred HHHHHHHHHhcc----chhhccc--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhc
Confidence 999999999532 6677865 5788999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcC
Q 005176 259 FSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNF 333 (710)
Q Consensus 259 FpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nf 333 (710)
||++.++||||.+|++|. .+++.+++|++...+..++...........+..+
T Consensus 391 ~p~e~~lriwD~lf~eg~-----------------------~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 442 (496)
T COG5210 391 FPLEYALRIWDCLFLEGS-----------------------SMLFQLALAILKLLRDKLLKLDSDELLDLLLKQL 442 (496)
T ss_pred CCHHHHHHHHHHHHHhcc-----------------------HHHHHHHHHHHHhhhhhhhccCchhHHHHHHHhh
Confidence 999999999999999986 4678899999999999999988744444444343
No 8
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=270.11 Aligned_cols=220 Identities=23% Similarity=0.463 Sum_probs=195.7
Q ss_pred CCCCCCCchhhh---cCCh--HHHHHHHHhhchhCCCCccCCCChhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHH
Q 005176 5 LSQNPDSTWGRF---FRSA--ELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLY 79 (710)
Q Consensus 5 Ls~~~~S~W~~~---frd~--ElekqIdkDL~RTfpe~~~~Fq~~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLy 79 (710)
|.|-++..|+-| -+.+ ...+||+.|++|+.+.. .+..++.+++.|||+|.+|+-.||.+.|+||+.-+++||||
T Consensus 368 LL~l~e~~~a~y~~IDk~Ts~~tdrqievdiprchQyd-~~lsSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ 446 (725)
T KOG1093|consen 368 LLQLEENHTAFYTLIDKGTSHSTDRQIEVDIPRCHQYD-ELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLY 446 (725)
T ss_pred HhcCccccchhhhhhhcCCCCcchhhhhcccchhhhcc-cccCCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHH
Confidence 445677788776 2223 56799999999999998 88999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhccccccccccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhcccc
Q 005176 80 VLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAY 159 (710)
Q Consensus 80 Vl~~D~~~l~ev~~~yed~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~y 159 (710)
.+.++
T Consensus 447 ln~Nn--------------------------------------------------------------------------- 451 (725)
T KOG1093|consen 447 LNFNN--------------------------------------------------------------------------- 451 (725)
T ss_pred HhcCc---------------------------------------------------------------------------
Confidence 97531
Q ss_pred ccccchhhcccccccHHHHHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhh
Q 005176 160 GAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVEL 239 (710)
Q Consensus 160 g~egelg~vLs~k~~EaDAF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~el 239 (710)
|+-||.|+..|+-+. +..||-.++. ..+++++.+|+++++.+||+|++||..+
T Consensus 452 ---------------e~laF~~~~~fi~ky-----cq~fflkdns-------~vikeyLs~f~~l~AfhDpeL~qHl~~~ 504 (725)
T KOG1093|consen 452 ---------------ELLAFACIATFIPKY-----CQHFFLKDNS-------NVIKEYLSMFSQLLAFHDPELLQHLIDI 504 (725)
T ss_pred ---------------hHHHHHHHHHHHHHH-----HHHHHhhcCc-------hhHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 677999999999886 3578876322 3688999999999999999999999999
Q ss_pred CCCcchhhhHHHHHhhCcCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhc
Q 005176 240 GVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLA 319 (710)
Q Consensus 240 gIep~lFalrWfltLFaREFpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~ 319 (710)
|+.|++||++||+|+|+++||++.++.+||.+|..++ .|.++++|||+.+.|+.||+
T Consensus 505 ~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~-----------------------SFplmi~vAil~~lR~~LLa 561 (725)
T KOG1093|consen 505 GFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHS-----------------------SFPLMIGVAILIQLRDPLLA 561 (725)
T ss_pred CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCC-----------------------ccHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999886 47899999999999999999
Q ss_pred CCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 005176 320 TENATTCLQRLLNFPVNINLKKIIGKTKSLQAL 352 (710)
Q Consensus 320 ~e~~~e~Lq~L~nfP~~iDv~~LI~kA~~Lq~~ 352 (710)
+.+ .+|+.++...| ++|++.+|...+.|++.
T Consensus 562 ~nf-ne~illf~d~p-dldId~~Ires~~l~e~ 592 (725)
T KOG1093|consen 562 CNF-NECILLFSDLP-DLDIDVCIRESYHLMET 592 (725)
T ss_pred CCc-hhheeeeccCC-cccHHHHHHHHhhhhhC
Confidence 986 89999999999 79999999999888763
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=5.9e-26 Score=243.90 Aligned_cols=195 Identities=22% Similarity=0.366 Sum_probs=174.9
Q ss_pred HHHHHHhhchhCCCCccCCCChh-HHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccccccc
Q 005176 23 EKMVDQDLSRLYPEHGSYFQTPG-CQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTD 101 (710)
Q Consensus 23 ekqIdkDL~RTfpe~~~~Fq~~~-~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~f~d 101 (710)
..+|+.|+.||||.. .+||..+ ...+|..||.+|+.+.|++||+|||.+|+|+||+.|.
T Consensus 356 v~~i~LDisrTfpsl-~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd------------------- 415 (586)
T KOG2223|consen 356 VELIKLDISRTFPSL-SIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMD------------------- 415 (586)
T ss_pred hhheeechhccCcce-eeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCC-------------------
Confidence 367999999999998 8888776 7899999999999999999999999999999987752
Q ss_pred ccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHHHHH
Q 005176 102 KFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCM 181 (710)
Q Consensus 102 ~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDAF~~ 181 (710)
+++||.+
T Consensus 416 -------------------------------------------------------------------------~~~AFia 422 (586)
T KOG2223|consen 416 -------------------------------------------------------------------------LADAFIA 422 (586)
T ss_pred -------------------------------------------------------------------------cHHHHHH
Confidence 5789999
Q ss_pred HHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcCCCh
Q 005176 182 FDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSL 261 (710)
Q Consensus 182 F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaREFpL 261 (710)
|.+|+++.. ..-||.. ..+.+..++..|+..|+.-.|+|+.||.++.+.|..|.+.|+++||+..+|+
T Consensus 423 fANLLdkp~----q~Aff~~--------d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpl 490 (586)
T KOG2223|consen 423 FANLLDKPC----QQAFFRV--------DHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPL 490 (586)
T ss_pred HHHHhccHH----HHHHHhc--------CcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCCh
Confidence 999999864 2347754 2356788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcCCCCCCHHH
Q 005176 262 GDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKK 341 (710)
Q Consensus 262 e~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nfP~~iDv~~ 341 (710)
+...||||+|+-+|. .|++..+++||..+++.||.+++ ..|+++|.++|.++-.++
T Consensus 491 dlacRIwDvy~rdge-----------------------eFlfr~~lgIlklyepkLl~mDf-~~~~qfLtklp~dL~~ee 546 (586)
T KOG2223|consen 491 DLACRIWDVYCRDGE-----------------------EFLFRTALGILKLYEPKLLVMDF-IHVAQFLTKLPEDLTPEE 546 (586)
T ss_pred HHhhhhhheeeecch-----------------------HHHHHHHHHHHHHccchHhhhhH-HHHHHHHHhCcccCCHHH
Confidence 999999999998886 68999999999999999999996 899999999999988888
Q ss_pred HHHHH
Q 005176 342 IIGKT 346 (710)
Q Consensus 342 LI~kA 346 (710)
+...-
T Consensus 547 lF~~i 551 (586)
T KOG2223|consen 547 LFMHI 551 (586)
T ss_pred HHHHH
Confidence 76543
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=4e-24 Score=231.33 Aligned_cols=241 Identities=23% Similarity=0.377 Sum_probs=194.5
Q ss_pred HHHHHHHhhchhCCCCccCCCCh--hHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccccc
Q 005176 22 LEKMVDQDLSRLYPEHGSYFQTP--GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHF 99 (710)
Q Consensus 22 lekqIdkDL~RTfpe~~~~Fq~~--~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~f 99 (710)
+-+||++|+-|+.|++ ..|..+ .+...|||||.+.|..+|++||||||.-|+|.||+.+.
T Consensus 211 ~~~qiekdllr~lpnn-~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~----------------- 272 (848)
T KOG2222|consen 211 IGKQIEKDLLRILPNN-ACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE----------------- 272 (848)
T ss_pred hhHHHHHHHHHhCCCc-ceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-----------------
Confidence 5589999999999998 777654 47889999999999999999999999999999887641
Q ss_pred ccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHHH
Q 005176 100 TDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAY 179 (710)
Q Consensus 100 ~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDAF 179 (710)
|+.||
T Consensus 273 ---------------------------------------------------------------------------ee~af 277 (848)
T KOG2222|consen 273 ---------------------------------------------------------------------------EENAF 277 (848)
T ss_pred ---------------------------------------------------------------------------chhHH
Confidence 56799
Q ss_pred HHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcCC
Q 005176 180 CMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREF 259 (710)
Q Consensus 180 ~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaREF 259 (710)
||+.+++..+. .+.||+. .|-|++..-.++.+|++-+.|.|-..|.++.|+..+..+.||+|||+..|
T Consensus 278 wmmaaiiedil----p~nfysq--------tllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~ 345 (848)
T KOG2222|consen 278 WMMAAIIEDIL----PANFYSQ--------TLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVF 345 (848)
T ss_pred HHHHHHHHHhc----Cchhhhh--------hHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHH
Confidence 99999999876 4578865 35678877789999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcC----CCHHHHHHHHhcCCC
Q 005176 260 SLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLAT----ENATTCLQRLLNFPV 335 (710)
Q Consensus 260 pLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~----e~~~e~Lq~L~nfP~ 335 (710)
-...++||||.||.+|. ..|+.+.++||.....+|... ++..+++..|..+|.
T Consensus 346 ~~killriwd~~fy~g~-----------------------i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~ 402 (848)
T KOG2222|consen 346 HMKILLRIWDFFFYEGG-----------------------INIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPA 402 (848)
T ss_pred HHHHHHHHHHhheecCc-----------------------chhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCc
Confidence 99999999999999885 347788999999988888764 777899999999996
Q ss_pred -CCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCCCCCC
Q 005176 336 -NINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNV 395 (710)
Q Consensus 336 -~iDv~~LI~kA~~Lq~~~~~~~~~s~~~~~~~~~~~s~~~~~r~~~~~~~s~sp~~p~~~ 395 (710)
..|++++++.|-..---..+ -.++.-..-.+...|...|+..-.+.+.|..|++.
T Consensus 403 ~vtdve~l~~~~~~~~~sis~-----~li~~~rkkh~a~lmadqg~~i~n~~a~~nlpkqq 458 (848)
T KOG2222|consen 403 EVTDVEKLFEQAGEFEFSISD-----HLIAEHRKKHLAVLMADQGHIIGNPAAAPNLPKQQ 458 (848)
T ss_pred hhhhHHHHHHHHhhcccchhH-----HHHHHHHHHhHHhhhhcCCcccCCcccCCCCcHHH
Confidence 59999999987654211100 00010111112345566777766667778888754
No 11
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.90 E-value=6e-24 Score=228.09 Aligned_cols=232 Identities=25% Similarity=0.392 Sum_probs=183.9
Q ss_pred HHHHhhchhCCCCccCCCChh--HHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhccccccccccc
Q 005176 25 MVDQDLSRLYPEHGSYFQTPG--CQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDK 102 (710)
Q Consensus 25 qIdkDL~RTfpe~~~~Fq~~~--~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~f~d~ 102 (710)
++++||.||..++ +||.+.. ..+.++|||+.||.+||.+||-|||.+++||.|--.+++.+
T Consensus 498 tvdkdvvrtdrnn-~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnese---------------- 560 (781)
T KOG2224|consen 498 TVDKDVVRTDRNN-PFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESE---------------- 560 (781)
T ss_pred EEecceeeccCCC-CcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccc----------------
Confidence 3679999999998 9998766 68899999999999999999999999999998876554322
Q ss_pred cCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHHHHHH
Q 005176 103 FDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMF 182 (710)
Q Consensus 103 fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDAF~~F 182 (710)
+-|||..++..|.+-.. . .|.+||+ |.|+||||
T Consensus 561 ------------tfwcfvglmqgmsdlva------------p-------------------ilaevld----esdtfwcf 593 (781)
T KOG2224|consen 561 ------------TFWCFVGLMQGMSDLVA------------P-------------------ILAEVLD----ESDTFWCF 593 (781)
T ss_pred ------------hhhhhhhhhccchhhhh------------h-------------------HHHhhhc----cccchhhh
Confidence 12788888777765310 1 1234444 89999999
Q ss_pred HHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCc--chhhhHHHHHhhCcCCC
Q 005176 183 DALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEP--QYFGLRWLRVLFGREFS 260 (710)
Q Consensus 183 ~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep--~lFalrWfltLFaREFp 260 (710)
+.||.. .||..++.+ ..+-..+.-+..|++...|..|+||+++|-+. .+||-||+++.|.||||
T Consensus 594 vglmqn--------a~fv~sp~d------~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ 659 (781)
T KOG2224|consen 594 VGLMQN--------AFFVCSPRD------EDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFP 659 (781)
T ss_pred hhhhcc--------eEEEeCCcc------hhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhccc
Confidence 999986 378766542 23556667889999999999999999988544 58999999999999999
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCH-HHHHHHHhcCCCCCCH
Q 005176 261 LGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENA-TTCLQRLLNFPVNINL 339 (710)
Q Consensus 261 Le~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~-~e~Lq~L~nfP~~iDv 339 (710)
-..++|||..-++..-. .-|.+++|+||+..+-+.+++..-. +++|-.+-++.--+|-
T Consensus 660 ea~airiweacwa~y~t---------------------dyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdg 718 (781)
T KOG2224|consen 660 EAEAIRIWEACWAHYLT---------------------DYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDG 718 (781)
T ss_pred HHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCc
Confidence 99999999999997641 1478899999999999999987543 3444444455556999
Q ss_pred HHHHHHHHHHHHHHhh
Q 005176 340 KKIIGKTKSLQALALD 355 (710)
Q Consensus 340 ~~LI~kA~~Lq~~~~~ 355 (710)
+-++.||..|.+.+..
T Consensus 719 elilrkar~ll~qfr~ 734 (781)
T KOG2224|consen 719 ELILRKARGLLHQFRL 734 (781)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 9999999999876653
No 12
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-21 Score=216.16 Aligned_cols=210 Identities=21% Similarity=0.331 Sum_probs=177.8
Q ss_pred HHHHHHHHhhchhCCCCccCCCChhH--HHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhccccccc
Q 005176 21 ELEKMVDQDLSRLYPEHGSYFQTPGC--QGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDH 98 (710)
Q Consensus 21 ElekqIdkDL~RTfpe~~~~Fq~~~~--q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~ 98 (710)
+-...|.+||.||.+.+ .|++.... ...|..||..|+.+++++||||||+++++|+++++..
T Consensus 236 ~~~~~i~~dv~rtDr~~-~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~d--------------- 299 (488)
T KOG2197|consen 236 ERKSRIEKDVGRTDRSL-EFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMED--------------- 299 (488)
T ss_pred hhhhhhhhhccccchhh-hhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecC---------------
Confidence 33478999999999998 88888877 9999999999999999999999999999999988632
Q ss_pred cccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHH
Q 005176 99 FTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDA 178 (710)
Q Consensus 99 f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDA 178 (710)
|++|
T Consensus 300 ----------------------------------------------------------------------------e~~a 303 (488)
T KOG2197|consen 300 ----------------------------------------------------------------------------EVEA 303 (488)
T ss_pred ----------------------------------------------------------------------------chHH
Confidence 7889
Q ss_pred HHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcC
Q 005176 179 YCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGRE 258 (710)
Q Consensus 179 F~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaRE 258 (710)
||||+.||....+ +|... ..++...+..+..+++..||.||.||+.++..-.+|++||+.+.|.||
T Consensus 304 FwcFv~fm~~~~~-----nF~~d---------~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrE 369 (488)
T KOG2197|consen 304 FWCFVGFMDRLRH-----NFRID---------QSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRRE 369 (488)
T ss_pred HHHHHHHHHHHhh-----cCccc---------cccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccc
Confidence 9999999999542 33322 236777788888999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCC-HHHHHHHHhcCCCCC
Q 005176 259 FSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATEN-ATTCLQRLLNFPVNI 337 (710)
Q Consensus 259 FpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~-~~e~Lq~L~nfP~~i 337 (710)
|..+++++||+.+++..... .|+++++.|||-.-...|+.... ..+.+..+..+..+.
T Consensus 370 f~~ed~l~LWEvlw~~~~~~---------------------~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~ 428 (488)
T KOG2197|consen 370 FEFEDSLRLWEVLWTDLPSP---------------------HFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKA 428 (488)
T ss_pred cccccHHHHHHHHHhcCccc---------------------hHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccc
Confidence 99999999999999876521 47889999999998888887643 356666677777789
Q ss_pred CHHHHHHHHHHHHHHHhhcC
Q 005176 338 NLKKIIGKTKSLQALALDAN 357 (710)
Q Consensus 338 Dv~~LI~kA~~Lq~~~~~~~ 357 (710)
|+..++..|..+........
T Consensus 429 d~~~~~~~A~~~~~~~k~~~ 448 (488)
T KOG2197|consen 429 DVLWVLVRAEALERQNKQME 448 (488)
T ss_pred hhhhHHHHHHHHHHHHHhcc
Confidence 99999999998887655443
No 13
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.80 E-value=4e-19 Score=201.67 Aligned_cols=184 Identities=25% Similarity=0.375 Sum_probs=160.8
Q ss_pred HHHHHhhchhCCCCccCCCCh--hHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccccccc
Q 005176 24 KMVDQDLSRLYPEHGSYFQTP--GCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTD 101 (710)
Q Consensus 24 kqIdkDL~RTfpe~~~~Fq~~--~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~f~d 101 (710)
..|-.|+-||||.| +||+.+ .+|..|.++|.+|++.+|++|||||..+++++||+.+.
T Consensus 623 hAi~idlgrtfp~h-~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~------------------- 682 (948)
T KOG4436|consen 623 HAILIDLGRTFPTH-PYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS------------------- 682 (948)
T ss_pred HHHHHhhccccCCC-HHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc-------------------
Confidence 34789999999999 999765 37899999999999999999999999999999987752
Q ss_pred ccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHHHHH
Q 005176 102 KFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCM 181 (710)
Q Consensus 102 ~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDAF~~ 181 (710)
|+.||-|
T Consensus 683 -------------------------------------------------------------------------e~~afel 689 (948)
T KOG4436|consen 683 -------------------------------------------------------------------------EENAFEL 689 (948)
T ss_pred -------------------------------------------------------------------------hhhHHHH
Confidence 6678888
Q ss_pred HHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcCCCh
Q 005176 182 FDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSL 261 (710)
Q Consensus 182 F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaREFpL 261 (710)
...||...+ |+.-|.+ .+-.++-.+..+.+++..+.+.||.||.++.|.|.+||.+||+++|+--||+
T Consensus 690 lk~LM~~r~----~r~qy~p--------dm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~l 757 (948)
T KOG4436|consen 690 LKFLMFDRG----MRKQYRP--------DMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPL 757 (948)
T ss_pred HHHHHHHHh----hHhhhch--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcc
Confidence 888887654 4444544 2445667778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcCCC
Q 005176 262 GDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 335 (710)
Q Consensus 262 e~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nfP~ 335 (710)
..+.||+|.+|..|. .+|+.+++++|-..+..|++.+++++++.++++.-+
T Consensus 758 Gfvarvfd~~flq~t-----------------------evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p 808 (948)
T KOG4436|consen 758 GFVARVFDLIFLQGT-----------------------EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLP 808 (948)
T ss_pred hHHHHHHHHHHhhcc-----------------------chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhh
Confidence 999999999999886 478899999999999999999999999999996544
No 14
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.79 E-value=2.4e-19 Score=200.59 Aligned_cols=183 Identities=23% Similarity=0.368 Sum_probs=162.5
Q ss_pred HHHHHHHhhchhCCCCccCCCChhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccccccc
Q 005176 22 LEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTD 101 (710)
Q Consensus 22 lekqIdkDL~RTfpe~~~~Fq~~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~f~d 101 (710)
.-..|++|+.|..|+| +-||.+.+...|||||.+||.+||+|||||-||-+++.+|+..
T Consensus 243 a~eEIE~Dl~rsLpEh-pA~Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~-------------------- 301 (671)
T KOG4347|consen 243 ATEEIEPDLGRSLPEH-PAFQSEPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFC-------------------- 301 (671)
T ss_pred ccccccCCCCCCCCcc-hhhhCCCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhh--------------------
Confidence 3467999999999999 9999999999999999999999999999999999999877653
Q ss_pred ccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHHHHH
Q 005176 102 KFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCM 181 (710)
Q Consensus 102 ~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDAF~~ 181 (710)
.|+.|||+
T Consensus 302 ------------------------------------------------------------------------~EEeafwl 309 (671)
T KOG4347|consen 302 ------------------------------------------------------------------------KEEEAFWL 309 (671)
T ss_pred ------------------------------------------------------------------------ccchHHHH
Confidence 16779999
Q ss_pred HHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcCCCh
Q 005176 182 FDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSL 261 (710)
Q Consensus 182 F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaREFpL 261 (710)
++++.+.. +.+||+.. .-|..-...+++.|+....|.||.|+..+| ......+.||++||.-.+|+
T Consensus 310 l~~lce~~-----ip~yys~~--------vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~l 375 (671)
T KOG4347|consen 310 LSKLCEIY-----IPDYYSKT--------VVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPL 375 (671)
T ss_pred HHHHHHHh-----cccccchh--------hhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcch
Confidence 99999985 45788753 335566677899999999999999999999 67789999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcCC
Q 005176 262 GDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFP 334 (710)
Q Consensus 262 e~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nfP 334 (710)
+..+||-|+||.+|. .+|+-||+||+..+.+.|+.+.+..+.|..|.||-
T Consensus 376 e~a~~ilD~FF~eG~-----------------------rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y~ 425 (671)
T KOG4347|consen 376 EYAVRILDCFFYEGP-----------------------RVLFQIALAILKQNAERILSATDDGEAMMVLGNYF 425 (671)
T ss_pred HHHHHHHhhhhhccc-----------------------HHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHH
Confidence 999999999999997 46899999999999999999887788888887764
No 15
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-18 Score=184.45 Aligned_cols=201 Identities=20% Similarity=0.270 Sum_probs=161.9
Q ss_pred HHHHHHhhchhCCCCc---cCCCChhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccccc
Q 005176 23 EKMVDQDLSRLYPEHG---SYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHF 99 (710)
Q Consensus 23 ekqIdkDL~RTfpe~~---~~Fq~~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~f 99 (710)
+.|+..|+.|++-... ++-+....|+.|..++...-..||.+.|-||.|||+.+||+|+.. .++
T Consensus 97 ~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~gE-~~A------------ 163 (395)
T KOG2595|consen 97 YNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVGE-LEA------------ 163 (395)
T ss_pred cceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhhh-Hhh------------
Confidence 5789999999875432 233444678889899999999999999999999999999999742 100
Q ss_pred ccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHHH
Q 005176 100 TDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAY 179 (710)
Q Consensus 100 ~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDAF 179 (710)
-..||+-++
T Consensus 164 -----------------------------------------------------------------------l~l~E~L~~ 172 (395)
T KOG2595|consen 164 -----------------------------------------------------------------------LSLMEELST 172 (395)
T ss_pred -----------------------------------------------------------------------hHHHHHHHH
Confidence 012355555
Q ss_pred HHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcCC
Q 005176 180 CMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREF 259 (710)
Q Consensus 180 ~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaREF 259 (710)
.-|..+|.. .|.+..+.+..+..+++..+|+||+.|....+++ +|++.|++|+|++.+
T Consensus 173 ~~lrdfM~~---------------------Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L 230 (395)
T KOG2595|consen 173 LHLRDFMLP---------------------TLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNL 230 (395)
T ss_pred HHHHHHHHH---------------------HHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcc
Confidence 555555543 2556778899999999999999999999999887 999999999999999
Q ss_pred -ChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHH-hcCCCCC
Q 005176 260 -SLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRL-LNFPVNI 337 (710)
Q Consensus 260 -pLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L-~nfP~~i 337 (710)
++..++|++|.|+++.+ -+.+|++++++++.|++|++++..+..++.+ ..+|.++
T Consensus 231 ~~~~~vvRlfD~Flas~p-----------------------l~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~l 287 (395)
T KOG2595|consen 231 KDIRIVVRLFDFFLASHP-----------------------LLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDL 287 (395)
T ss_pred hhHHHHHHHHHHHHhcCc-----------------------chhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCcccc
Confidence 88999999999999865 2578999999999999999987655555555 5999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005176 338 NLKKIIGKTKSLQAL 352 (710)
Q Consensus 338 Dv~~LI~kA~~Lq~~ 352 (710)
.++.+|..+..+...
T Consensus 288 p~d~lik~s~~~i~~ 302 (395)
T KOG2595|consen 288 PYDTLIKESVLLITR 302 (395)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999877654
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.76 E-value=8.4e-19 Score=190.63 Aligned_cols=181 Identities=27% Similarity=0.444 Sum_probs=160.6
Q ss_pred HHHHHhhchhCCCCccCCCC--hhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccccccc
Q 005176 24 KMVDQDLSRLYPEHGSYFQT--PGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTD 101 (710)
Q Consensus 24 kqIdkDL~RTfpe~~~~Fq~--~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed~f~d 101 (710)
.+| .|+.||+|.+ ..|+. ...|..|.+||.+|++++|++||||||..++++++.++.
T Consensus 187 ~~~-~d~~Rt~~~~-~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~------------------- 245 (397)
T KOG1102|consen 187 EII-RDLSRTFPAH-LLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP------------------- 245 (397)
T ss_pred HHH-hhccCcCcch-hhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-------------------
Confidence 455 9999999999 66765 346889999999999999999999999999999987652
Q ss_pred ccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHHHHHH
Q 005176 102 KFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCM 181 (710)
Q Consensus 102 ~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaDAF~~ 181 (710)
|++||++
T Consensus 246 -------------------------------------------------------------------------ee~af~~ 252 (397)
T KOG1102|consen 246 -------------------------------------------------------------------------EEEAFPL 252 (397)
T ss_pred -------------------------------------------------------------------------hhhhhhh
Confidence 6889999
Q ss_pred HHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcCCCh
Q 005176 182 FDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSL 261 (710)
Q Consensus 182 F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaREFpL 261 (710)
+..+|...+ .++|.. |++++...+..+.++++.+-|.++.|+...++...+|+.+|++|+|+..||+
T Consensus 253 lv~l~~~~~-----~~~~~~--------~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~ 319 (397)
T KOG1102|consen 253 LVKLMKNYG-----LDLLSP--------GFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPL 319 (397)
T ss_pred hhhhhhccc-----hhcccc--------cCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccH
Confidence 999999854 455543 5677888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcCCC
Q 005176 262 GDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 335 (710)
Q Consensus 262 e~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nfP~ 335 (710)
+.+++|||.+|.+|. .+++.++++++.+..+.++..+ .+..++++.+.+.
T Consensus 320 ~~~~ri~d~~~~~g~-----------------------~i~~~~~~~l~~~~~~~~~~~~-~e~~~~~l~~~~~ 369 (397)
T KOG1102|consen 320 ELVLRIWDALFVEGV-----------------------SILFRFSLALLKHKADDLLDLD-FESLLSYLRVDLP 369 (397)
T ss_pred HHHHHHhHHHHHhch-----------------------HHHHHHHHHHhhhhhHHHhhcc-HHHHHHHHhcccH
Confidence 999999999999883 5789999999999999999998 5899999996554
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.1e-12 Score=132.95 Aligned_cols=126 Identities=24% Similarity=0.387 Sum_probs=111.4
Q ss_pred hHHHHHHHHhhchhCCCCccCCCChh--HHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccc
Q 005176 20 AELEKMVDQDLSRLYPEHGSYFQTPG--CQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHED 97 (710)
Q Consensus 20 ~ElekqIdkDL~RTfpe~~~~Fq~~~--~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed 97 (710)
....+.|.+|++|-||.| ..|-..+ .+..|.|+|.+|.+++|+.||||+-.-|+|++|+.+.
T Consensus 140 p~t~e~i~kdl~rqfp~h-emf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp--------------- 203 (267)
T KOG2221|consen 140 PKTAEGIHKDLHRQFPFH-EMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP--------------- 203 (267)
T ss_pred CcchhhhccccccCCCcc-cccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc---------------
Confidence 344688999999999999 7776543 6889999999999999999999999999999887652
Q ss_pred ccccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhcccccccHHH
Q 005176 98 HFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHD 177 (710)
Q Consensus 98 ~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~EaD 177 (710)
+.|
T Consensus 204 -----------------------------------------------------------------------------~rd 206 (267)
T KOG2221|consen 204 -----------------------------------------------------------------------------ARD 206 (267)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 578
Q ss_pred HHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHH
Q 005176 178 AYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWL 251 (710)
Q Consensus 178 AF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWf 251 (710)
|||||..+..+. +.+||+. ||..|+..-..|..||+..+|..|.||...+|+|.+|...||
T Consensus 207 af~~~vqiceky-----lqgy~~s--------gleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 207 AFWCFVQICEKY-----LQGYYSS--------GLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHHHHH-----ccccccc--------chhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 999999999986 4578865 788888888899999999999999999999999999999997
No 18
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.31 E-value=9.5e-12 Score=135.73 Aligned_cols=135 Identities=19% Similarity=0.317 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHh
Q 005176 175 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL 254 (710)
Q Consensus 175 EaDAF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltL 254 (710)
..|.|-||.++|++.- .++ .+..|. -+..|+-||..+||+|.+||..+.|.|.+|++.||.+|
T Consensus 130 rsd~fN~F~ai~~kYI----Pkd--------crpkg~-----~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sL 192 (669)
T KOG3636|consen 130 RSDEFNVFFAITTKYI----PKD--------CRPKGQ-----IFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASL 192 (669)
T ss_pred cchhhhhhHhhhhccc----CCC--------CCCCCc-----cchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHH
Confidence 4578999999998732 111 112232 23578889999999999999999999999999999999
Q ss_pred hCcCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCC--CHHHHHHHHhc
Q 005176 255 FGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATE--NATTCLQRLLN 332 (710)
Q Consensus 255 FaREFpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e--~~~e~Lq~L~n 332 (710)
|+...+.+.+.-+||.||-.+.+ | +++++++-||+.-|+.||..+ .-++++++|-+
T Consensus 193 Fas~~Stev~~a~WdlY~qqaDP-------------F---------~vffLaliiLiNake~ILq~~sdsKEe~ikfLen 250 (669)
T KOG3636|consen 193 FASSMSTEVCHALWDLYIQQADP-------------F---------LVFFLALIILINAKEEILQVKSDSKEEAIKFLEN 250 (669)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCc-------------e---------ehHHHHHHHhcccHHHHhhhccccHHHHHHHHHc
Confidence 99999999999999999987763 2 567889999999999999864 34789999999
Q ss_pred CCCC---CCHHHHHHHHHH
Q 005176 333 FPVN---INLKKIIGKTKS 348 (710)
Q Consensus 333 fP~~---iDv~~LI~kA~~ 348 (710)
.|.. .|+..+...|..
T Consensus 251 mp~~L~~eDvpDffsLAqy 269 (669)
T KOG3636|consen 251 MPAQLSVEDVPDFFSLAQY 269 (669)
T ss_pred CchhcccccchhHHHHHHH
Confidence 9974 666777665543
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=98.77 E-value=2.7e-08 Score=114.95 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=152.9
Q ss_pred HHHHHhhchhCCCCccCCCChh---------HHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhccc
Q 005176 24 KMVDQDLSRLYPEHGSYFQTPG---------CQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNE 94 (710)
Q Consensus 24 kqIdkDL~RTfpe~~~~Fq~~~---------~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~ 94 (710)
-.|.+|+.||||+| .+|.... .+++|+++..+|....-++||+||-+.+++.+++++.
T Consensus 229 ~~Irrdi~~~~~eh-~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~------------ 295 (948)
T KOG4436|consen 229 GIIRRDIERTYPEH-YFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP------------ 295 (948)
T ss_pred HHHHHHhhccCcce-eeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc------------
Confidence 38999999999999 7776432 4899999999999999999999999999998877652
Q ss_pred cccccccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccccccchhhccccccc
Q 005176 95 HEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFM 174 (710)
Q Consensus 95 yed~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg~egelg~vLs~k~~ 174 (710)
T Consensus 296 -------------------------------------------------------------------------------- 295 (948)
T KOG4436|consen 296 -------------------------------------------------------------------------------- 295 (948)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhch-hhhhhhHhhCCCcchhhhHHHHH
Q 005176 175 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADS-SLHSHLVELGVEPQYFGLRWLRV 253 (710)
Q Consensus 175 EaDAF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP-~L~~HL~elgIep~lFalrWflt 253 (710)
++.+|+.+..+|... +....|.+. +.++-..+..++.....+.| .|+.|+.+.++....|+-.||++
T Consensus 296 ~E~assv~~~lm~~~----rl~~l~kpe--------~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt 363 (948)
T KOG4436|consen 296 VEEASSVKVQLMILY----RLRELSKPE--------MEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLT 363 (948)
T ss_pred HHHHHHHHHHHHHhh----cccccCCcc--------cchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHH
Confidence 455899999999874 467777664 23444455577778888888 99999999999999999999999
Q ss_pred hhCcCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHH-HHhcCCCHHHHHHHHh-
Q 005176 254 LFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRS-SLLATENATTCLQRLL- 331 (710)
Q Consensus 254 LFaREFpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs-~LL~~e~~~e~Lq~L~- 331 (710)
.|...||+.-.-++.|.+.+.|- .+++++.+|++...++ .++..+ +...+++.+
T Consensus 364 ~~ltt~Pi~~a~r~~~~f~~egl-----------------------lk~fr~~ia~~~~~~d~~~~s~D-~EG~~~~~qr 419 (948)
T KOG4436|consen 364 NFLTTFPIFMAARISDTFSSEGL-----------------------LKRFRDSIAYLHQLRDIELESLD-MEGMLSYFQR 419 (948)
T ss_pred hhcccCchhhccccccccccccH-----------------------HHHHhhhHHHHHHHhhhhhhccC-ccccccchhh
Confidence 99999999999999998877663 4566889999944444 444444 456666655
Q ss_pred cCCC--CCCHHHHHHHHHHHH
Q 005176 332 NFPV--NINLKKIIGKTKSLQ 350 (710)
Q Consensus 332 nfP~--~iDv~~LI~kA~~Lq 350 (710)
+.+. .-+++++...|...+
T Consensus 420 ~~s~~vggtp~k~~t~a~q~q 440 (948)
T KOG4436|consen 420 NRSNTVGGTPDKLRTAAWQVQ 440 (948)
T ss_pred ccccccCCCCchHHHHHHHHh
Confidence 3332 255666666555544
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00046 Score=73.70 Aligned_cols=107 Identities=14% Similarity=0.290 Sum_probs=68.1
Q ss_pred HHHHHHHHhchhhhhhhHhhCCCc-chhhhHHHHHhhCcCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCch
Q 005176 220 AMYHLLSVADSSLHSHLVELGVEP-QYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPR 298 (710)
Q Consensus 220 ~L~~LL~~~DP~L~~HL~elgIep-~lFalrWfltLFaREFpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r 298 (710)
.|.+|+.++....|+.++...-+- +.| -.|-+-||+ ++|+--..|++|.|+.+|.
T Consensus 182 tfgdlvnkycqaahklmvavsedvlqvy-adwqrwlfg-elplcyfarvfdvflvegy---------------------- 237 (559)
T KOG2801|consen 182 TFGDLVNKYCQAAHKLMVAVSEDVLQVY-ADWQRWLFG-ELPLCYFARVFDVFLVEGY---------------------- 237 (559)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHhc-cchHHHHHHHhhheeecch----------------------
Confidence 344444444444444443221111 223 367777775 6999999999999999986
Q ss_pred hHHHHHHHHHHHHHhHHHHhc----CCCH-HHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005176 299 GALIAAMAVSMMLYIRSSLLA----TENA-TTCLQRLLNFPVNINLKKIIGKTKSLQA 351 (710)
Q Consensus 299 ~~fI~~vavAILl~lRs~LL~----~e~~-~e~Lq~L~nfP~~iDv~~LI~kA~~Lq~ 351 (710)
.++.++++|||...-+---. .+.. .++-.++..+...+.+++|+++|..++-
T Consensus 238 -kvlyrvalailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafairl 294 (559)
T KOG2801|consen 238 -KVLYRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRL 294 (559)
T ss_pred -HHHHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 46889999999877654332 2221 2344455555556889999999987763
No 21
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.18 E-value=1.9e-05 Score=88.22 Aligned_cols=56 Identities=34% Similarity=0.560 Sum_probs=49.4
Q ss_pred HHHHHhhchhCCCCccCCCChhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHh
Q 005176 24 KMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVL 81 (710)
Q Consensus 24 kqIdkDL~RTfpe~~~~Fq~~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl 81 (710)
..|++|+.|+..+. -+|.+....+. +|+.+.|-.++-+-||.|||.+|++|++..+
T Consensus 608 ~~~~kd~e~~~~~~-~~fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ 663 (813)
T KOG1648|consen 608 HRIDKDVERCDRNL-MFFSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTF 663 (813)
T ss_pred eeecchhhhCcchh-eeecCCcchhh-heeeeeeeccccccccccchhhccCCcCCCh
Confidence 35899999998876 89999888877 9999999999999999999999999987554
No 22
>PF14961 BROMI: Broad-minded protein
Probab=96.84 E-value=0.0084 Score=73.52 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=89.7
Q ss_pred CccCCcHHHHH-HHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcCCChHHHHHHHHHHhccCCCCCCCCCC
Q 005176 206 GSLTCLLPVIE-ASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTE 284 (710)
Q Consensus 206 gs~tgLp~i~~-~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaREFpLe~vLrIWD~ifa~g~~~~~~~~e 284 (710)
....|++++.- .+..++.+|+.-.|.+|..|.-.|..|...|.||+.-.|=.-+++..++.--=..+..|.
T Consensus 1154 ~~~s~i~p~~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~-------- 1225 (1296)
T PF14961_consen 1154 TAESGIHPVYFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP-------- 1225 (1296)
T ss_pred hhhcCCCchhhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc--------
Confidence 34457777754 445889999999999999999999999999999999999999999998866555555554
Q ss_pred CCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcC-C-CCCCHHHHHHHHHHHHH
Q 005176 285 DDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNF-P-VNINLKKIIGKTKSLQA 351 (710)
Q Consensus 285 ~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nf-P-~~iDv~~LI~kA~~Lq~ 351 (710)
++-+|+|||++.+++.+||...- +.-|+.+++- | ....+..-+.....|..
T Consensus 1226 ---------------dyqvY~~VailkHlq~~ilq~~q-~q~L~~flke~~l~gF~~~~~~~yM~~Le~ 1278 (1296)
T PF14961_consen 1226 ---------------DYQVYICVAILKHLQPEILQHTQ-TQDLQVFLKEEALRGFRVSDYLEYMENLEQ 1278 (1296)
T ss_pred ---------------cceeehhHHHHHHhhHHHHHhhh-hchHHHHhhhccccceeHHhHHHHHHHHHH
Confidence 24468999999999999998653 3435554431 1 12445555554444443
Done!