BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005177
(710 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 169/308 (54%), Gaps = 9/308 (2%)
Query: 80 INLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFN-LTSLISLDISRNNFS 138
+N+S G +P PL+ L L+L+ N F+G+ P + +L LD+S N+F
Sbjct: 249 LNISSNQFVGPIPPLPLK----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 139 GHFPGGIQSLRNLLVLDAFSNSFSGSVPAE-ISQLEHLKVLNLAGSYFSGPIPSQFGSFK 197
G P S L L SN+FSG +P + + ++ LKVL+L+ + FSG +P +
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 198 -SLEFLHLAGNLLNDQIPAELGM--LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAG 254
SL L L+ N + I L T+ + + N + G IP L N SE+ L ++
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 255 ANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFA 314
LSG+IP L +L+KL L L+ N L G++P E V TL++L L N L+G IP +
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 315 DLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST 374
+ NL +SL N ++G +P+ + +L +L IL + NN FSG++P LG L W+D++T
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 375 NNFNGSIP 382
N FNG+IP
Sbjct: 545 NLFNGTIP 552
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 163/327 (49%), Gaps = 22/327 (6%)
Query: 101 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 160
N L +L L +N F+G+ P + N + L+SL +S N SG P + SL L L + N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 161 FSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 220
G +P E+ ++ L+ L L + +G IPS + +L ++ L+ N L +IP +G L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 221 KTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL--------SNLTKLE 272
+ + +++ N + GNIP +LG+ + +LD+ +G+IP + +N +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 273 SLFLFRN--------------QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKN 318
+N + G + +R++T +++ G +F + +
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 319 LRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFN 378
+ L + YN +SG +P+ + +P L IL + +N SGS+P+ +G L +D+S+N +
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 379 GSIPPDICSGGVLFKLILFSNNFTGIV 405
G IP + + +L ++ L +NN +G +
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 157/312 (50%), Gaps = 8/312 (2%)
Query: 73 NNTIVVGINLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDI 132
N + +V ++LS LSG +P + ++L DL L N G+ P E+ + +L +L +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 133 SRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQ 192
N+ +G P G+ + NL + +N +G +P I +LE+L +L L+ + FSG IP++
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 193 FGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDI 252
G +SL +L L NL N IPA M K +I NF G + N +
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPA--AMFKQSG--KIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 253 AGANL--SGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIP 310
AG L G ++L+ L+ + G F ++ LD+S N LSG IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 311 ESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWV 370
+ + L +L+L +N++SG++P+ + L L IL + +N G +P+ + + L +
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 371 DVSTNNFNGSIP 382
D+S NN +G IP
Sbjct: 707 DLSNNNLSGPIP 718
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 164/332 (49%), Gaps = 31/332 (9%)
Query: 103 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 162
L L++S N SG F I T L L+IS N F G P L++L L N F+
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFT 279
Query: 163 GSVPAEIS-QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE-LGML 220
G +P +S + L L+L+G++F G +P FGS LE L L+ N + ++P + L +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 221 KTVTHMEIGYNFYQGNIPWQLGNMS-EVQYLDIAGANLSGSIPKELSNLTK--LESLFLF 277
+ + +++ +N + G +P L N+S + LD++ N SG I L K L+ L+L
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 278 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL 337
N G++P S + L SL LS N LSG IP S L LR L L N + G +P+ L
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 338 VQLPSLEILFI--------------------W----NNYFSGSLPENLGRNSKLRWVDVS 373
+ + +LE L + W NN +G +P+ +GR L + +S
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 374 TNNFNGSIPPDICSGGVLFKLILFSNNFTGIV 405
N+F+G+IP ++ L L L +N F G +
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 196/424 (46%), Gaps = 79/424 (18%)
Query: 31 LLSLKSELVDDFNSLHDWFVPPGVNPAGKIYACSWSGVKCNKNNTIVVGINLSMKGLSGA 90
L+S K +++ D N L DW NP C++ GV C + V I+LS
Sbjct: 14 LISFK-DVLPDKNLLPDW--SSNKNP------CTFDGVTCRDDK--VTSIDLS------- 55
Query: 91 LPGKPLRIFFNELVDLN----------LSHNSFSGQFPVEIFNLT-SLISLDISRNNFSG 139
KPL + F+ + LS++ +G V F + SL SLD+SRN+ SG
Sbjct: 56 --SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSLSG 111
Query: 140 ------------------------HFPGGIQ---SLRNLLVLDAFSNSFSGS------VP 166
FPG + L +L VLD +NS SG+ +
Sbjct: 112 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 171
Query: 167 AEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHM 226
+L+HL + +G+ SG + +LEFL ++ N + IP LG + H+
Sbjct: 172 DGCGELKHLAI---SGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 225
Query: 227 EIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP 286
+I N G+ + +E++ L+I+ G IP L L+ L L N+ G++P
Sbjct: 226 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 283
Query: 287 WEFS-RVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVP-ESLVQLPSLE 344
S TL LDLS N G +P F L L+L N SG +P ++L+++ L+
Sbjct: 284 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 343
Query: 345 ILFIWNNYFSGSLPENLGR-NSKLRWVDVSTNNFNGSIPPDICSG--GVLFKLILFSNNF 401
+L + N FSG LPE+L ++ L +D+S+NNF+G I P++C L +L L +N F
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 402 TGIV 405
TG +
Sbjct: 404 TGKI 407
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 130/271 (47%), Gaps = 48/271 (17%)
Query: 87 LSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQ 146
L G +P + ++ L L L N +G+ P + N T+L + +S N +G P I
Sbjct: 451 LEGEIPQE--LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 147 SLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPS-----------QFGS 195
L NL +L +NSFSG++PAE+ L L+L + F+G IP+ F +
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 568
Query: 196 FKSLEFL---------HLAGNLLNDQ-IPAE-LGMLKT---------------------- 222
K ++ H AGNLL Q I +E L L T
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 223 --VTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 280
+ +++ YN G IP ++G+M + L++ ++SGSIP E+ +L L L L N+
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 281 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE 311
L G++P S +T L +DLS+N LSGPIPE
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 169/308 (54%), Gaps = 9/308 (2%)
Query: 80 INLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFN-LTSLISLDISRNNFS 138
+N+S G +P PL+ L L+L+ N F+G+ P + +L LD+S N+F
Sbjct: 252 LNISSNQFVGPIPPLPLK----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 139 GHFPGGIQSLRNLLVLDAFSNSFSGSVPAE-ISQLEHLKVLNLAGSYFSGPIPSQFGSFK 197
G P S L L SN+FSG +P + + ++ LKVL+L+ + FSG +P +
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 198 -SLEFLHLAGNLLNDQIPAELGM--LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAG 254
SL L L+ N + I L T+ + + N + G IP L N SE+ L ++
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 255 ANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFA 314
LSG+IP L +L+KL L L+ N L G++P E V TL++L L N L+G IP +
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 315 DLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST 374
+ NL +SL N ++G +P+ + +L +L IL + NN FSG++P LG L W+D++T
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 375 NNFNGSIP 382
N FNG+IP
Sbjct: 548 NLFNGTIP 555
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 163/327 (49%), Gaps = 22/327 (6%)
Query: 101 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 160
N L +L L +N F+G+ P + N + L+SL +S N SG P + SL L L + N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 161 FSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 220
G +P E+ ++ L+ L L + +G IPS + +L ++ L+ N L +IP +G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 221 KTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL--------SNLTKLE 272
+ + +++ N + GNIP +LG+ + +LD+ +G+IP + +N +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 273 SLFLFRN--------------QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKN 318
+N + G + +R++T +++ G +F + +
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 319 LRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFN 378
+ L + YN +SG +P+ + +P L IL + +N SGS+P+ +G L +D+S+N +
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 379 GSIPPDICSGGVLFKLILFSNNFTGIV 405
G IP + + +L ++ L +NN +G +
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 157/312 (50%), Gaps = 8/312 (2%)
Query: 73 NNTIVVGINLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDI 132
N + +V ++LS LSG +P + ++L DL L N G+ P E+ + +L +L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 133 SRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQ 192
N+ +G P G+ + NL + +N +G +P I +LE+L +L L+ + FSG IP++
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 193 FGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDI 252
G +SL +L L NL N IPA M K +I NF G + N +
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPA--AMFK--QSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 253 AGANL--SGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIP 310
AG L G ++L+ L+ + G F ++ LD+S N LSG IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 311 ESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWV 370
+ + L +L+L +N++SG++P+ + L L IL + +N G +P+ + + L +
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 371 DVSTNNFNGSIP 382
D+S NN +G IP
Sbjct: 710 DLSNNNLSGPIP 721
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 164/332 (49%), Gaps = 31/332 (9%)
Query: 103 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 162
L L++S N SG F I T L L+IS N F G P L++L L N F+
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFT 282
Query: 163 GSVPAEIS-QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE-LGML 220
G +P +S + L L+L+G++F G +P FGS LE L L+ N + ++P + L +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 221 KTVTHMEIGYNFYQGNIPWQLGNMS-EVQYLDIAGANLSGSIPKELSNLTK--LESLFLF 277
+ + +++ +N + G +P L N+S + LD++ N SG I L K L+ L+L
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 278 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL 337
N G++P S + L SL LS N LSG IP S L LR L L N + G +P+ L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 338 VQLPSLEILFI--------------------W----NNYFSGSLPENLGRNSKLRWVDVS 373
+ + +LE L + W NN +G +P+ +GR L + +S
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 374 TNNFNGSIPPDICSGGVLFKLILFSNNFTGIV 405
N+F+G+IP ++ L L L +N F G +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 195/424 (45%), Gaps = 79/424 (18%)
Query: 31 LLSLKSELVDDFNSLHDWFVPPGVNPAGKIYACSWSGVKCNKNNTIVVGINLSMKGLSGA 90
L+S K +++ D N L DW + C++ GV C + V I+LS
Sbjct: 17 LISFK-DVLPDKNLLPDW--------SSNKNPCTFDGVTCRDDK--VTSIDLS------- 58
Query: 91 LPGKPLRIFFNELVDLN----------LSHNSFSGQFPVEIFNLT-SLISLDISRNNFSG 139
KPL + F+ + LS++ +G V F + SL SLD+SRN+ SG
Sbjct: 59 --SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSLSG 114
Query: 140 ------------------------HFPGGIQ---SLRNLLVLDAFSNSFSGS------VP 166
FPG + L +L VLD +NS SG+ +
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174
Query: 167 AEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHM 226
+L+HL + +G+ SG + +LEFL ++ N + IP LG + H+
Sbjct: 175 DGCGELKHLAI---SGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228
Query: 227 EIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP 286
+I N G+ + +E++ L+I+ G IP L L+ L L N+ G++P
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286
Query: 287 WEFS-RVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVP-ESLVQLPSLE 344
S TL LDLS N G +P F L L+L N SG +P ++L+++ L+
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 345 ILFIWNNYFSGSLPENLGR-NSKLRWVDVSTNNFNGSIPPDICSG--GVLFKLILFSNNF 401
+L + N FSG LPE+L ++ L +D+S+NNF+G I P++C L +L L +N F
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 402 TGIV 405
TG +
Sbjct: 407 TGKI 410
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 130/271 (47%), Gaps = 48/271 (17%)
Query: 87 LSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQ 146
L G +P + ++ L L L N +G+ P + N T+L + +S N +G P I
Sbjct: 454 LEGEIPQE--LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 147 SLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPS-----------QFGS 195
L NL +L +NSFSG++PAE+ L L+L + F+G IP+ F +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571
Query: 196 FKSLEFL---------HLAGNLLNDQ-IPAE-LGMLKT---------------------- 222
K ++ H AGNLL Q I +E L L T
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 223 --VTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 280
+ +++ YN G IP ++G+M + L++ ++SGSIP E+ +L L L L N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 281 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE 311
L G++P S +T L +DLS+N LSGPIPE
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 136/262 (51%), Gaps = 22/262 (8%)
Query: 464 KAVLPTGITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY 520
K L G V+VK+++ T+ ++ +E + I H+NL+RL GFC + L+Y
Sbjct: 48 KGRLADGXLVAVKRLKEERTQGGELQFQTE-VEMISMAVHRNLLRLRGFCMTPTERLLVY 106
Query: 521 DYLPNGNLSEKIRTK------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 574
Y+ NG+++ +R + DW + +I LG ARGL +LH C P I H D+KA+NI+
Sbjct: 107 PYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANIL 166
Query: 575 FDENMEPHLAEFGFKYLTQLADGSFPAKIAWT---ESGEFYNAMKEEMYMDVYGFGEIIL 631
DE E + +FG L D + + E+ + K DV+G+G ++L
Sbjct: 167 LDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLL 226
Query: 632 EILTN------GRLTNAGSSLQNKPIDGLLGEMYNEN--EVGSSSSLQD-EIKLVLDVAL 682
E++T RL N + + GLL E E +V + +D E++ ++ VAL
Sbjct: 227 ELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVAL 286
Query: 683 LCTRSTPSDRPSMEEALKLLSG 704
LCT+S+P +RP M E +++L G
Sbjct: 287 LCTQSSPMERPKMSEVVRMLEG 308
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 26/264 (9%)
Query: 464 KAVLPTGITVSVKKI-----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL 518
K L G V+VK++ + G + + E I+ H+NL+RL GFC + L
Sbjct: 56 KGRLADGTLVAVKRLKEERXQGGELQFQTEVEMIS---MAVHRNLLRLRGFCMTPTERLL 112
Query: 519 LYDYLPNGNLSEKIRTKR------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASN 572
+Y Y+ NG+++ +R + DW + +I LG ARGL +LH C P I H D+KA+N
Sbjct: 113 VYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAAN 172
Query: 573 IVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWT---ESGEFYNAMKEEMYMDVYGFGEI 629
I+ DE E + +FG L D + T + E+ + K DV+G+G +
Sbjct: 173 ILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVM 232
Query: 630 ILEILTN------GRLTNAGSSLQNKPIDGLLGEMYNEN--EVGSSSSLQD-EIKLVLDV 680
+LE++T RL N + + GLL E E +V + +D E++ ++ V
Sbjct: 233 LLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQV 292
Query: 681 ALLCTRSTPSDRPSMEEALKLLSG 704
ALLCT+S+P +RP M E +++L G
Sbjct: 293 ALLCTQSSPMERPKMSEVVRMLEG 316
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 133/314 (42%), Gaps = 43/314 (13%)
Query: 29 EALLSLKSELVDDFNSLHDWFVPPGVNPAGKIYACSWSGVKCNKNNTIVVGINLSMKGLS 88
+ALL +K +L + +L W P +W GV C+ + NL + GL+
Sbjct: 9 QALLQIKKDLGNP-TTLSSWL------PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 89 GALPGKPLRIFFNELVDLNLSH----NSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGG 144
P P+ L LN + N+ G P I LT L L I+ N SG P
Sbjct: 62 LPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 145 IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL 204
+ ++ L+ LD N+ SG++P IS L +L + G+ SG IP +GSF
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS------- 173
Query: 205 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE 264
K T M I N G IP N+ + ++D++ L G
Sbjct: 174 ----------------KLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRV---TTLKSLDLSDNRLSGPIPESFADLKNLRL 321
+ + + L +N LA ++ +V L LDL +NR+ G +P+ LK L
Sbjct: 217 FGSDKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 322 LSLMYNEMSGTVPE 335
L++ +N + G +P+
Sbjct: 273 LNVSFNNLCGEIPQ 286
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 16/243 (6%)
Query: 165 VPAEISQLEHLKVLNLAG-SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 223
+P+ ++ L +L L + G + GPIP L +L++ ++ IP L +KT+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 224 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL-ESLFLFRNQLA 282
++ YN G +P + ++ + + G +SG+IP + +KL S+ + RN+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 283 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS---GTVPESLVQ 339
G++P F+ + L +DLS N L G F KN + + L N ++ G V S
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS--- 243
Query: 340 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVL--FKLILF 397
+L L + NN G+LP+ L + L ++VS NN G IP GG L F + +
Sbjct: 244 -KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAY 298
Query: 398 SNN 400
+NN
Sbjct: 299 ANN 301
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 246 EVQYLDIAGANLSGS--IPKELSNLTKLESLFLFR-NQLAGQVPWEFSRVTTLKSLDLSD 302
V LD++G NL IP L+NL L L++ N L G +P +++T L L ++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 303 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG 362
+SG IP+ + +K L L YN +SGT+P S+ LP+L + N SG++P++ G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 363 RNSKL-RWVDVSTNNFNGSIPP 383
SKL + +S N G IPP
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPP 192
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 290 SRVTTLKSLDLSDNRLSGP--IPESFADLKNLRLLSLM-YNEMSGTVPESLVQLPSLEIL 346
++ + +LDLS L P IP S A+L L L + N + G +P ++ +L L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 347 FIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGIV 405
+I + SG++P+ L + L +D S N +G++PP I S L + N +G +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 40/228 (17%)
Query: 499 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI------RTKRDWAAKYKIVLGVARGL 552
RH +L+ L+GFC R++ L+Y Y+ NGNL + W + +I +G ARGL
Sbjct: 93 RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 553 CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTE---S 608
+LH AI H D+K+ NI+ DEN P + +FG K T+L + T
Sbjct: 153 HYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYID 209
Query: 609 GEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS 668
E++ + DVY FG ++ E+L A S++ + L EM N E S
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVLC------ARSAI----VQSLPREMVNLAEWAVES 259
Query: 669 SLQDEIKLVL-----------------DVALLCTRSTPSDRPSMEEAL 699
+++ ++ D A+ C + DRPSM + L
Sbjct: 260 HNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 40/228 (17%)
Query: 499 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI------RTKRDWAAKYKIVLGVARGL 552
RH +L+ L+GFC R++ L+Y Y+ NGNL + W + +I +G ARGL
Sbjct: 93 RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 553 CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTE---S 608
+LH AI H D+K+ NI+ DEN P + +FG K T+L + T
Sbjct: 153 HYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYID 209
Query: 609 GEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS 668
E++ + DVY FG ++ E+L A S++ + L EM N E S
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVLC------ARSAI----VQSLPREMVNLAEWAVES 259
Query: 669 SLQDEIKLVL-----------------DVALLCTRSTPSDRPSMEEAL 699
+++ ++ D A+ C + DRPSM + L
Sbjct: 260 HNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 472 TVSVKKIEWGATRIKIVSEFITR--------IGTVRHKNLIRLLGFCYNRHQAYLLYDYL 523
TV+VKK+ A + I +E + + + +H+NL+ LLGF + L+Y Y+
Sbjct: 56 TVAVKKL---AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYM 112
Query: 524 PNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 578
PNG+L +++ W + KI G A G+ FLH + + H D+K++NI+ DE
Sbjct: 113 PNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEA 169
Query: 579 MEPHLAEFGFKYLTQ-LADGSFPAKIAWTESGEFYNAMKEEMY--MDVYGFGEIILEILT 635
+++FG ++ A ++I T + A++ E+ D+Y FG ++LEI+T
Sbjct: 170 FTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT 229
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 472 TVSVKKIEWGATRIKIVSEFITR--------IGTVRHKNLIRLLGFCYNRHQAYLLYDYL 523
TV+VKK+ A + I +E + + + +H+NL+ LLGF + L+Y Y+
Sbjct: 50 TVAVKKL---AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYM 106
Query: 524 PNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 578
PNG+L +++ W + KI G A G+ FLH + + H D+K++NI+ DE
Sbjct: 107 PNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEA 163
Query: 579 MEPHLAEFGFKYLTQ-LADGSFPAKIAWTESGEFYNAMKEEMY--MDVYGFGEIILEILT 635
+++FG ++ A +I T + A++ E+ D+Y FG ++LEI+T
Sbjct: 164 FTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT 223
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 472 TVSVKKIEWGATRIKIVSEFITR--------IGTVRHKNLIRLLGFCYNRHQAYLLYDYL 523
TV+VKK+ A + I +E + + + +H+NL+ LLGF + L+Y Y+
Sbjct: 56 TVAVKKL---AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYM 112
Query: 524 PNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 578
PNG+L +++ W + KI G A G+ FLH + + H D+K++NI+ DE
Sbjct: 113 PNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEA 169
Query: 579 MEPHLAEFGFKYLTQ-LADGSFPAKIAWTESGEFYNAMKEEMY--MDVYGFGEIILEILT 635
+++FG ++ A +I T + A++ E+ D+Y FG ++LEI+T
Sbjct: 170 FTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT 229
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 472 TVSVKKIEWGATRIKIVSEFITR--------IGTVRHKNLIRLLGFCYNRHQAYLLYDYL 523
TV+VKK+ A + I +E + + +H+NL+ LLGF + L+Y Y
Sbjct: 47 TVAVKKL---AAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYX 103
Query: 524 PNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 578
PNG+L +++ W + KI G A G+ FLH + + H D+K++NI+ DE
Sbjct: 104 PNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEA 160
Query: 579 MEPHLAEFGFKYLTQ-LADGSFPAKIAWTESGEFYNAMKEEMY--MDVYGFGEIILEILT 635
+++FG ++ A ++I T + A++ E+ D+Y FG ++LEI+T
Sbjct: 161 FTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGEITPKSDIYSFGVVLLEIIT 220
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 113 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 171
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 172 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 227
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 228 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 285
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 286 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 339
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 340 D---CWHAVPSQRPTFKQLVEDLDRI 362
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 67 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 182 DLAARNVLVTENNVMRIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 67 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIIHLLGACTQDGPLYVIVEYASK 125
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 54 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 112
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 113 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 168
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 169 DLTARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 226
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 227 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 280
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 281 D---CWHAVPSQRPTFKQLVEDLDRI 303
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 59 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 117
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 118 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 173
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 174 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 231
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 232 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 285
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 286 D---CWHAVPSQRPTFKQLVEDLDRI 308
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I GA + E + + H L++L G C + L+++++ +G LS+ +
Sbjct: 37 VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 96
Query: 533 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
RT+R A ++ L V G+ +L C + H DL A N + EN +++FG
Sbjct: 97 RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 153
Query: 590 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 643
T FP K A S E ++ + DV+ FG ++ E+ + G++
Sbjct: 154 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 210
Query: 644 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 703
S D G + + S+ V + C R P DRP+ L+ L+
Sbjct: 211 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWRERPEDRPAFSRLLRQLA 262
Query: 704 GLKPHG 709
+ G
Sbjct: 263 EIAESG 268
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 56 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 114
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 115 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 170
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 171 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 228
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 229 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 282
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 283 D---CWHAVPSQRPTFKQLVEDLDRI 305
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 67 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIITLLGACTQDGPLYVIVEYASK 125
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 67 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y +G P K W ++ +
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKNTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 44/265 (16%)
Query: 470 GITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 526
+TV+VK ++ AT +VSE +HKN+I LLG C Y++ +Y G
Sbjct: 67 AVTVAVKMLKDDATEEDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 126
Query: 527 NLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHGD 567
NL E +R +R +Y +ARG+ +L C H D
Sbjct: 127 NLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HRD 182
Query: 568 LKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 620
L A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 183 LAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQS 240
Query: 621 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 680
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 241 -DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRD 294
Query: 681 ALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 295 ---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ Y
Sbjct: 67 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVGYASK 125
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ Y
Sbjct: 67 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVAYASK 125
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG Y + +G P K W ++ +
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I GA + E + + H L++L G C + L+++++ +G LS+ +
Sbjct: 34 VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 93
Query: 533 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
RT+R A ++ L V G+ +L C + H DL A N + EN +++FG
Sbjct: 94 RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 150
Query: 590 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 643
T FP K A S E ++ + DV+ FG ++ E+ + G++
Sbjct: 151 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 207
Query: 644 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 703
S D G + + S+ V + C + P DRP+ L+ L+
Sbjct: 208 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWKERPEDRPAFSRLLRQLA 259
Query: 704 GLKPHG 709
+ G
Sbjct: 260 EIAESG 265
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I GA + E + + H L++L G C + L+++++ +G LS+ +
Sbjct: 32 VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 91
Query: 533 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
RT+R A ++ L V G+ +L C + H DL A N + EN +++FG
Sbjct: 92 RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 148
Query: 590 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 643
T FP K A S E ++ + DV+ FG ++ E+ + G++
Sbjct: 149 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 205
Query: 644 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 703
S D G + + S+ V + C + P DRP+ L+ L+
Sbjct: 206 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWKERPEDRPAFSRLLRQLA 257
Query: 704 GLKPHG 709
+ G
Sbjct: 258 EIAESG 263
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 23/246 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I GA + E + + H L++L G C + L+ +++ +G LS+ +
Sbjct: 35 VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYL 94
Query: 533 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
RT+R A ++ L V G+ +L C + H DL A N + EN +++FG
Sbjct: 95 RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 151
Query: 590 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 643
T FP K A S E ++ + DV+ FG ++ E+ + G++
Sbjct: 152 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 208
Query: 644 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 703
S D G + + S+ V + C R P DRP+ L+ L+
Sbjct: 209 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWRERPEDRPAFSRLLRQLA 260
Query: 704 GLKPHG 709
+ G
Sbjct: 261 EIAESG 266
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 47/276 (17%)
Query: 459 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 513
A G P +T V+VK ++ AT K +S+ I+ + ++ HKN+I LLG C
Sbjct: 89 EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 555
Y++ +Y GNL E ++ +R +Y VARG+ +L
Sbjct: 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 207
Query: 556 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 607
C H DL A N++ E+ +A+FG Y + +G P K W
Sbjct: 208 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 261
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 667
++ + DV+ FG ++ EI T G GS P++ L + + +
Sbjct: 262 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 315
Query: 668 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 703
S+ +E+ +++ C + PS RP+ ++ ++ L
Sbjct: 316 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLD 348
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 459 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 513
A G P +T V+VK ++ AT K +S+ I+ + ++ HKN+I LLG C
Sbjct: 48 EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 106
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 555
Y++ +Y GNL E ++ +R +Y VARG+ +L
Sbjct: 107 GPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 166
Query: 556 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 607
C H DL A N++ E+ +A+FG Y + +G P K W
Sbjct: 167 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 220
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 667
++ + DV+ FG ++ EI T G GS P++ L + + +
Sbjct: 221 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 274
Query: 668 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
S+ +E+ +++ C + PS RP+ ++ ++ L +
Sbjct: 275 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 309
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 459 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 513
A G P +T V+VK ++ AT K +S+ I+ + ++ HKN+I LLG C
Sbjct: 41 EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 99
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 555
Y++ +Y GNL E ++ +R +Y VARG+ +L
Sbjct: 100 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 159
Query: 556 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 607
C H DL A N++ E+ +A+FG Y + +G P K W
Sbjct: 160 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 213
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 667
++ + DV+ FG ++ EI T G GS P++ L + + +
Sbjct: 214 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 267
Query: 668 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
S+ +E+ +++ C + PS RP+ ++ ++ L +
Sbjct: 268 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 302
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 459 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 513
A G P +T V+VK ++ AT K +S+ I+ + ++ HKN+I LLG C
Sbjct: 37 EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 95
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 555
Y++ +Y GNL E ++ +R +Y VARG+ +L
Sbjct: 96 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 155
Query: 556 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 607
C H DL A N++ E+ +A+FG Y + +G P K W
Sbjct: 156 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 209
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 667
++ + DV+ FG ++ EI T G GS P++ L + + +
Sbjct: 210 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 263
Query: 668 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
S+ +E+ +++ C + PS RP+ ++ ++ L +
Sbjct: 264 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 298
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 459 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 513
A G P +T V+VK ++ AT K +S+ I+ + ++ HKN+I LLG C
Sbjct: 40 EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 98
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 555
Y++ +Y GNL E ++ +R +Y VARG+ +L
Sbjct: 99 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 158
Query: 556 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 607
C H DL A N++ E+ +A+FG Y + +G P K W
Sbjct: 159 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 212
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 667
++ + DV+ FG ++ EI T G GS P++ L + + +
Sbjct: 213 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 266
Query: 668 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
S+ +E+ +++ C + PS RP+ ++ ++ L +
Sbjct: 267 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 301
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 459 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 513
A G P +T V+VK ++ AT K +S+ I+ + ++ HKN+I LLG C
Sbjct: 48 EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 106
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 555
Y++ +Y GNL E ++ +R +Y VARG+ +L
Sbjct: 107 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 166
Query: 556 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 607
C H DL A N++ E+ +A+FG Y + +G P K W
Sbjct: 167 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 220
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 667
++ + DV+ FG ++ EI T G GS P++ L + + +
Sbjct: 221 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 274
Query: 668 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
S+ +E+ +++ C + PS RP+ ++ ++ L +
Sbjct: 275 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 309
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 459 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 513
A G P +T V+VK ++ AT K +S+ I+ + ++ HKN+I LLG C
Sbjct: 33 EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 91
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 555
Y++ +Y GNL E ++ +R +Y VARG+ +L
Sbjct: 92 GPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 151
Query: 556 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 607
C H DL A N++ E+ +A+FG Y + +G P K W
Sbjct: 152 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 205
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 667
++ + DV+ FG ++ EI T G GS P++ L + + +
Sbjct: 206 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 259
Query: 668 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
S+ +E+ +++ C + PS RP+ ++ ++ L +
Sbjct: 260 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 294
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I+ G+ E + + H L++L G C + L+++++ +G LS+ +
Sbjct: 54 VAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 113
Query: 533 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
RT+R A ++ L V G+ +L C + H DL A N + EN +++FG
Sbjct: 114 RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 170
Query: 590 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 643
T FP K A S E ++ + DV+ FG ++ E+ + G++
Sbjct: 171 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 227
Query: 644 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 703
S D G + + S+ V + C + P DRP+ L+ L+
Sbjct: 228 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWKERPEDRPAFSRLLRQLA 279
Query: 704 GLKPHG 709
+ G
Sbjct: 280 EIAESG 285
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 115/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 67 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
Query: 526 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R +Y +ARG+ +L C H
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG + +G P K W ++ +
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I GA + E + + H L++L G C + L+++++ +G LS+ +
Sbjct: 34 VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 93
Query: 533 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
RT+R A ++ L V G+ +L ++ H DL A N + EN +++FG
Sbjct: 94 RTQRGLFAAETLLGMCLDVCEGMAYLEE---ASVIHRDLAARNCLVGENQVIKVSDFGMT 150
Query: 590 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 643
T FP K A S E ++ + DV+ FG ++ E+ + G++
Sbjct: 151 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 207
Query: 644 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 703
S D G + + S+ V + C + P DRP+ L+ L+
Sbjct: 208 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWKERPEDRPAFSRLLRQLA 259
Query: 704 GLKPHG 709
+ G
Sbjct: 260 AIAASG 265
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 46/266 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ AT K +S+ ++ + ++ HKN+I LLG C Y++ +Y
Sbjct: 67 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
Query: 526 GNLSEKIRTKRD--WAAKYKI----------------VLGVARGLCFL-HHDCYPAIPHG 566
GNL E +R +R Y I +ARG+ +L C H
Sbjct: 126 GNLREYLRARRPPGMEXSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N++ EN +A+FG + +G P K W ++ +
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 679
DV+ FG ++ EI T G GS P++ L + + + ++ +E+ +++
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 680 VALLCTRSTPSDRPSMEEALKLLSGL 705
C + PS RP+ ++ ++ L +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 47/278 (16%)
Query: 459 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 513
A G P +T V+VK ++ AT K +S+ I+ + ++ HKN+I LLG C
Sbjct: 48 EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 106
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 555
Y++ +Y GNL E ++ + +Y VARG+ +L
Sbjct: 107 GPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 166
Query: 556 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 607
C H DL A N++ E+ +A+FG Y + +G P K W
Sbjct: 167 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 220
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 667
++ + DV+ FG ++ EI T G GS P++ L + + +
Sbjct: 221 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 274
Query: 668 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
S+ +E+ +++ C + PS RP+ ++ ++ L +
Sbjct: 275 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 309
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 118/278 (42%), Gaps = 47/278 (16%)
Query: 459 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 513
A G P +T V+VK ++ AT K +S+ I+ + ++ HKN+I LLG C
Sbjct: 48 EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 106
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKI------------------VLGVARGLCFL 555
Y++ +Y GNL E ++ +R ++ VARG+ +L
Sbjct: 107 GPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDLVSCAYQVARGMEYL 166
Query: 556 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 607
C H DL A N++ E+ +A+FG + +G P K W
Sbjct: 167 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLPVK--WMA 220
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 667
++ + DV+ FG ++ EI T G GS P++ L + + +
Sbjct: 221 PEALFDRIYTHQS-DVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 274
Query: 668 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
S+ +E+ +++ C + PS RP+ ++ ++ L +
Sbjct: 275 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 309
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 143/293 (48%), Gaps = 38/293 (12%)
Query: 80 INLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG 139
IN S L+ P K L +LVD+ +++N + P+ NLT+L L + N +
Sbjct: 68 INFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD 121
Query: 140 HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSL 199
P +++L NL L+ SN+ S + +S L L+ LN + + + P + +L
Sbjct: 122 IDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTL 175
Query: 200 EFLHLAGNLLND-QIPAELGMLKTV----------------THM-EIGYNFYQGNIPWQL 241
E L ++ N ++D + A+L L+++ T++ E+ N Q L
Sbjct: 176 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 235
Query: 242 GNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLS 301
+++ + LD+A +S P LS LTKL L L NQ++ P + +T L +L+L+
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 291
Query: 302 DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 354
+N+L P ++LKNL L+L +N +S P S L L+ LF +NN S
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVS 340
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 241 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 300
L N++++ + + L+ P L NLTKL + + NQ+A P + +T L L L
Sbjct: 62 LNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 301 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN 360
+N+++ P +L NL L L N +S +L L SL+ L +N + P
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP-- 168
Query: 361 LGRNSKLRWVDVSTN 375
L + L +D+S+N
Sbjct: 169 LANLTTLERLDISSN 183
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 22/237 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +Y+P GNL +
Sbjct: 58 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLD 117
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 118 YLRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLS 177
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN + DV+ FG ++ EI T G
Sbjct: 178 RLMTGDTYTAHAGAKFP--IKWTAPESLAYNTFS--IKSDVWAFGVLLWEIATYGMSPYP 233
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEA 698
G L + LL + Y E G V ++ C + +P+DRPS E
Sbjct: 234 GIDLSQ--VYDLLEKGYRMEQPEGCPPK-------VYELMRACWKWSPADRPSFAET 281
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 36/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G ++ E + T++H L+RL Y++ +Y+ G+L + +
Sbjct: 40 VAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFL 99
Query: 533 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
++ D++A+ +A G+ ++ Y H DL+A+N++ E++
Sbjct: 100 KSDEGGKVLLPKLIDFSAQ------IAEGMAYIERKNY---IHRDLRAANVLVSESLMCK 150
Query: 583 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
+A+FG + + D + A+ I WT + E N + DV+ FG ++ EI+T
Sbjct: 151 IADFGLARVIE--DNEYTAREGAKFPIKWT-APEAINFGCFTIKSDVWSFGILLYEIVTY 207
Query: 637 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 696
G++ G + N + L + Y V + DE+ D+ +C + +RP+ +
Sbjct: 208 GKIPYPGRT--NADVMTALSQGYRMPRV---ENCPDEL---YDIMKMCWKEKAEERPTFD 259
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 143/293 (48%), Gaps = 38/293 (12%)
Query: 80 INLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG 139
IN S L+ P K L +LVD+ +++N + P+ NLT+L L + N +
Sbjct: 68 INFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD 121
Query: 140 HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSL 199
P +++L NL L+ SN+ S + +S L L+ L+ + + + P + +L
Sbjct: 122 IDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTL 175
Query: 200 EFLHLAGNLLND-QIPAELGMLKTV----------------THM-EIGYNFYQGNIPWQL 241
E L ++ N ++D + A+L L+++ T++ E+ N Q L
Sbjct: 176 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 235
Query: 242 GNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLS 301
+++ + LD+A +S P LS LTKL L L NQ++ P + +T L +L+L+
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 291
Query: 302 DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 354
+N+L P ++LKNL L+L +N +S P S L L+ LF +NN S
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVS 340
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 241 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 300
L N++++ + + L+ P L NLTKL + + NQ+A P + +T L L L
Sbjct: 62 LNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 301 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN 360
+N+++ P +L NL L L N +S +L L SL+ L +N + P
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 361 LGRNSKLRWVDVSTN 375
L + L +D+S+N
Sbjct: 169 LANLTTLERLDISSN 183
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 127/261 (48%), Gaps = 24/261 (9%)
Query: 95 PLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG-HFPGGIQSLRNLLV 153
PL N L L L +N + P++ NLT+L L++S N S G+ SL+ L
Sbjct: 107 PLANLTN-LTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQL-- 161
Query: 154 LDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQI 213
+F N + P ++ L L+ L+++ + S S +LE L N ++D
Sbjct: 162 --SFGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT 215
Query: 214 PAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLES 273
P LG+L + E+ N Q L +++ + LD+A +S P LS LTKL
Sbjct: 216 P--LGILTNLD--ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269
Query: 274 LFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTV 333
L L NQ++ P + +T L +L+L++N+L P ++LKNL L+L +N +S
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325
Query: 334 PESLVQLPSLEILFIWNNYFS 354
P S L L+ LF +NN S
Sbjct: 326 PVS--SLTKLQRLFFYNNKVS 344
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 241 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 300
L N++++ + + L+ P L NLTKL + + NQ+A P + +T L L L
Sbjct: 67 LNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119
Query: 301 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN 360
+N+++ P +L NL L L N +S +L L SL+ L N N
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLKPLAN 175
Query: 361 LGRNSKLRWVDVSTN 375
L + L +D+S+N
Sbjct: 176 L---TTLERLDISSN 187
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 39/293 (13%)
Query: 80 INLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG 139
IN S L+ P K L +LVD+ +++N + P+ NLT+L L + N +
Sbjct: 68 INFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD 121
Query: 140 HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSL 199
P +++L NL L+ SN+ S + +S L L+ LN G+ + P + +L
Sbjct: 122 IDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTDLKP--LANLTTL 174
Query: 200 EFLHLAGNLLND-QIPAELGMLKTVTHM-----------------EIGYNFYQGNIPWQL 241
E L ++ N ++D + A+L L+++ E+ N Q L
Sbjct: 175 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 234
Query: 242 GNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLS 301
+++ + LD+A +S P LS LTKL L L NQ++ P + +T L +L+L+
Sbjct: 235 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 290
Query: 302 DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 354
+N+L P ++LKNL L+L +N +S P S L L+ LF +NN S
Sbjct: 291 ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVS 339
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 241 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 300
L N++++ + + L+ P L NLTKL + + NQ+A P + +T L L L
Sbjct: 62 LNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 301 SDNRLSGPIPESFADLKNLRLLSLMYNEMS 330
+N+++ P +L NL L L N +S
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 23/113 (20%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES------------ 312
L+NLT L L LF NQ+ P + +T L L+LS N +S S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 313 -------FADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLP 358
A+L L L + N++S L +L +LE L NN S P
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 41/242 (16%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 40 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 533 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
+T D AA+ +A G+ F+ Y H DL+A+NI+ + +
Sbjct: 99 KTPSGIKLTINKLLDMAAQ------IAEGMAFIEERNYI---HRDLRAANILVSDTLSCK 149
Query: 583 LAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
+A+FG L + A+ FP I WT + E N + DV+ FG ++ EI+T+
Sbjct: 150 IADFGLARLIEDAEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTH 206
Query: 637 GRLTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPS 694
GR+ P G+ E+ E G D + + + LC + P DRP+
Sbjct: 207 GRI----------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256
Query: 695 ME 696
+
Sbjct: 257 FD 258
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 35 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 93
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 94 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 150
Query: 589 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L + D + A+ I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 151 ARLIE--DNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRI--- 204
Query: 643 GSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 696
P G+ E+ E G D + + + LC + P DRP+ +
Sbjct: 205 -------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 253
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 46 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 104
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 105 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 161
Query: 589 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L + D + A+ I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 162 ARL--IEDNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRI--- 215
Query: 643 GSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 696
P G+ E+ E G D + + + LC + P DRP+ +
Sbjct: 216 -------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 264
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 41/242 (16%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 50 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 108
Query: 533 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
+T D AA+ +A G+ F+ Y H DL+A+NI+ + +
Sbjct: 109 KTPSGIKLTINKLLDMAAQ------IAEGMAFIEERNYI---HRDLRAANILVSDTLSCK 159
Query: 583 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
+A+FG L + D + A+ I WT + E N + DV+ FG ++ EI+T+
Sbjct: 160 IADFGLARL--IEDNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTH 216
Query: 637 GRLTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPS 694
GR+ P G+ E+ E G D + + + LC + P DRP+
Sbjct: 217 GRI----------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 266
Query: 695 ME 696
+
Sbjct: 267 FD 268
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 40 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 99 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 155
Query: 589 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L + D + A+ I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 156 ARLIE--DNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRI--- 209
Query: 643 GSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 696
P G+ E+ E G D + + + LC + P DRP+ +
Sbjct: 210 -------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 258
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 45 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 103
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 104 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 160
Query: 589 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L + D + A+ I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 161 ARL--IEDNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRI--- 214
Query: 643 GSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 696
P G+ E+ E G D + + + LC + P DRP+ +
Sbjct: 215 -------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 263
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 49 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 107
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 108 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 164
Query: 589 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T FP I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 165 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 221
Query: 643 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 696
G + N + L Y + + +E+ ++ LC + P DRP+ +
Sbjct: 222 G--MTNPEVIQNLERGYR---MVRPDNCPEELYQLMR---LCWKERPEDRPTFD 267
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 126/261 (48%), Gaps = 24/261 (9%)
Query: 95 PLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG-HFPGGIQSLRNLLV 153
PL N L L L +N + P++ NLT+L L++S N S G+ SL+ L
Sbjct: 106 PLANLTN-LTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQL-- 160
Query: 154 LDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQI 213
+F N + P ++ L L+ L+++ + S S +LE L N ++D
Sbjct: 161 --SFGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT 214
Query: 214 PAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLES 273
P LG+L + E+ N Q L +++ + LD+A +S P LS LTKL
Sbjct: 215 P--LGILTNLD--ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 268
Query: 274 LFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTV 333
L L NQ++ P + +T L +L+L++N+L P ++LKNL L+L +N +S
Sbjct: 269 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 324
Query: 334 PESLVQLPSLEILFIWNNYFS 354
P S L L+ LF NN S
Sbjct: 325 PVS--SLTKLQRLFFANNKVS 343
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 241 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 300
L N++++ + + L+ P L NLTKL + + NQ+A P + +T L L L
Sbjct: 66 LNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 118
Query: 301 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN 360
+N+++ P +L NL L L N +S +L L SL+ L N N
Sbjct: 119 FNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLKPLAN 174
Query: 361 LGRNSKLRWVDVSTN 375
L + L +D+S+N
Sbjct: 175 L---TTLERLDISSN 186
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 42 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 100
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 101 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 157
Query: 589 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T FP I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 158 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 214
Query: 643 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 696
G + N + L Y + + +E+ ++ LC + P DRP+ +
Sbjct: 215 G--MTNPEVIQNLERGYR---MVRPDNCPEELYQLMR---LCWKERPEDRPTFD 260
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 139/293 (47%), Gaps = 38/293 (12%)
Query: 80 INLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG 139
IN S L+ P K L +LVD+ +++N + P+ NLT+L L + N +
Sbjct: 68 INFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD 121
Query: 140 HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSL 199
P +++L NL L+ SN+ S + +S L L+ L+ + + + P + +L
Sbjct: 122 IDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTL 175
Query: 200 EFLHLAGNLLND-QIPAELGMLKTVTHM-----------------EIGYNFYQGNIPWQL 241
E L ++ N ++D + A+L L+++ E+ N Q L
Sbjct: 176 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 235
Query: 242 GNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLS 301
+++ + LD+A +S P LS LTKL L L NQ++ P + +T L +L+L+
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 291
Query: 302 DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 354
+N+L P ++LKNL L+L +N +S P S L L+ LF NN S
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVS 340
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 241 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 300
L N++++ + + L+ P L NLTKL + + NQ+A P + +T L L L
Sbjct: 62 LNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 301 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN 360
+N+++ P +L NL L L N +S +L L SL+ L +N + P
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 361 LGRNSKLRWVDVSTN 375
L + L +D+S+N
Sbjct: 169 LANLTTLERLDISSN 183
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 41/242 (16%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 48 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 106
Query: 533 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
+T D AA+ +A G+ F+ Y H DL+A+NI+ + +
Sbjct: 107 KTPSGIKLTINKLLDMAAQ------IAEGMAFIEERNYI---HRDLRAANILVSDTLSCK 157
Query: 583 LAEFGFKYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
+A+FG L T FP I WT + E N + DV+ FG ++ EI+T+
Sbjct: 158 IADFGLARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTH 214
Query: 637 GRLTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPS 694
GR+ P G+ E+ E G D + + + LC + P DRP+
Sbjct: 215 GRI----------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 264
Query: 695 ME 696
+
Sbjct: 265 FD 266
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 46 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 104
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 105 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 161
Query: 589 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T FP I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 162 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 218
Query: 643 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 696
G + N + L Y + + +E+ ++ LC + P DRP+ +
Sbjct: 219 G--MTNPEVIQNLERGYR---MVRPDNCPEELYQLMR---LCWKERPEDRPTFD 264
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 29/236 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 41 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 99
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 100 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 156
Query: 589 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T FP I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 157 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRI--- 210
Query: 643 GSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 696
P G+ E+ E G D + + + LC + P DRP+ +
Sbjct: 211 -------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 259
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 29/236 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 40 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 99 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 155
Query: 589 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T FP I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 156 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRI--- 209
Query: 643 GSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 696
P G+ E+ E G D + + + LC + P DRP+ +
Sbjct: 210 -------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 258
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 40 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H DL+A+NI+ + + +A+FG
Sbjct: 99 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 155
Query: 589 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T FP I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 156 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 212
Query: 643 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 696
G + N + L Y + + +E+ ++ LC + P DRP+ +
Sbjct: 213 G--MTNPEVIQNLERGYR---MVRPDNCPEELYQLMR---LCWKERPEDRPTFD 258
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 139/293 (47%), Gaps = 39/293 (13%)
Query: 80 INLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG 139
IN S L+ P K L +LVD+ +++N + P+ NLT+L L + N +
Sbjct: 68 INFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD 121
Query: 140 HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSL 199
P +++L NL L+ SN+ S + +S L L+ LN G+ + P + +L
Sbjct: 122 IDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTDLKP--LANLTTL 174
Query: 200 EFLHLAGNLLND-QIPAELGMLKTVTHM-----------------EIGYNFYQGNIPWQL 241
E L ++ N ++D + A+L L+++ E+ N Q L
Sbjct: 175 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 234
Query: 242 GNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLS 301
+++ + LD+A +S P LS LTKL L L NQ++ P + +T L +L+L+
Sbjct: 235 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 290
Query: 302 DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 354
+N+L P ++LKNL L+L +N +S P S L L+ LF NN S
Sbjct: 291 ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVS 339
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 241 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 300
L N++++ + + L+ P L NLTKL + + NQ+A P + +T L L L
Sbjct: 62 LNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 301 SDNRLSGPIPESFADLKNLRLLSLMYNEMS 330
+N+++ P +L NL L L N +S
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 23/113 (20%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES------------ 312
L+NLT L L LF NQ+ P + +T L L+LS N +S S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 313 -------FADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLP 358
A+L L L + N++S L +L +LE L NN S P
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 44 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 103
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 104 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 163
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 164 RLMTGDTXTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 219
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 220 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 44 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 103
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 104 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 163
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 164 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 219
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 220 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 40 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 99
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 100 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 159
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 160 RLMTGDTXTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 215
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 216 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 262
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 43 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 102
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 103 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 162
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 163 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 218
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 219 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 265
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 44 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 103
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 104 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 163
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 164 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 219
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 220 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 39 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 98
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 99 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 158
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 159 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 214
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 215 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 40 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 99
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 100 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 159
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 160 RLMTGDTYTAPAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 215
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 216 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 262
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 39 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 98
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 99 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 158
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 159 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 214
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 215 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 41 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 100
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 101 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 160
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 161 RLMTGDTYTAPAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 216
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 217 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 263
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 39 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 98
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 99 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 158
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 159 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 214
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 215 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 39 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 98
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 99 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 158
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 159 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 214
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 215 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 39 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 98
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 99 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 158
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 159 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 214
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 215 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 44 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 103
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 104 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 163
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 164 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 219
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 220 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 41 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 100
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 101 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 160
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 161 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 216
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 217 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 263
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 44 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 103
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 104 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 163
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 164 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 219
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 220 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 41 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 100
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 101 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 160
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 161 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 216
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 217 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 263
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 52 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 111
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 112 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 171
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 172 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 227
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 228 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 274
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 39 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 98
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 99 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 158
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 159 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 214
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 215 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ + ++H+ L+RL + Y++ +Y+ NG+L + +
Sbjct: 36 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 94
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+T K + +A G+ F+ Y H +L+A+NI+ + + +A+FG
Sbjct: 95 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRNLRAANILVSDTLSCKIADFGL 151
Query: 589 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L + D + A+ I WT + E N + DV+ FG ++ EI+T+GR+
Sbjct: 152 ARLIE--DNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRI--- 205
Query: 643 GSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 696
P G+ E+ E G D + + + LC + P DRP+ +
Sbjct: 206 -------PYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 254
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 110/240 (45%), Gaps = 36/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G ++ E + T++H L+RL Y++ +++ G+L + +
Sbjct: 39 VAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFL 98
Query: 533 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
++ D++A+ +A G+ ++ Y H DL+A+N++ E++
Sbjct: 99 KSDEGGKVLLPKLIDFSAQ------IAEGMAYIERKNY---IHRDLRAANVLVSESLMCK 149
Query: 583 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
+A+FG + + D + A+ I WT + E N + +V+ FG ++ EI+T
Sbjct: 150 IADFGLARVIE--DNEYTAREGAKFPIKWT-APEAINFGCFTIKSNVWSFGILLYEIVTY 206
Query: 637 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 696
G++ G + N + L + Y + + DE+ D+ +C + +RP+ +
Sbjct: 207 GKIPYPGRT--NADVMSALSQGYR---MPRMENCPDEL---YDIMKMCWKEKAEERPTFD 258
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 37 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 96
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 97 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 156
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 157 RLMTGDTXTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 212
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G + + LL + Y E G V ++ C + PSDRPS E
Sbjct: 213 G--IDPSQVYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 259
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 37 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 96
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 97 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 156
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 157 RLMTGDTXTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 212
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G + + LL + Y E G V ++ C + PSDRPS E
Sbjct: 213 G--IDPSQVYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 259
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 37 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 96
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H DL A N + EN +A+FG
Sbjct: 97 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 156
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 157 RLMTGDTFTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 212
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G + + LL + Y E G V ++ C + PSDRPS E
Sbjct: 213 G--IDPSQVYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 259
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 285 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 344
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H +L A N + EN +A+FG
Sbjct: 345 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLS 404
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 405 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 460
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 461 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 507
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 246 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 305
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H +L A N + EN +A+FG
Sbjct: 306 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLS 365
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 366 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 421
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 422 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 468
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 530
+TV+VK ++ ++ + + ++H NL++LLG C Y++ +++ GNL +
Sbjct: 243 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 302
Query: 531 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 589
+R ++L +A + + + H +L A N + EN +A+FG
Sbjct: 303 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLS 362
Query: 590 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
L T A FP I WT YN K + DV+ FG ++ EI T G
Sbjct: 363 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 418
Query: 643 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
G L + LL + Y E G V ++ C + PSDRPS E
Sbjct: 419 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 465
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 294 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 352
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 353 KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 406
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 407 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 462
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 463 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 512
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 109/234 (46%), Gaps = 25/234 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ ++ + T++H L++L + Y++ +++ G+L + +
Sbjct: 42 VAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV-TKEPIYIITEFMAKGSLLDFL 100
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
++ K+ +A G+ F+ Y H DL+A+NI+ ++ +A+FG
Sbjct: 101 KSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYI---HRDLRAANILVSASLVCKIADFGL 157
Query: 589 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
+ + D + A+ I WT + E N + DV+ FG +++EI+T GR+
Sbjct: 158 ARVIE--DNEYTAREGAKFPIKWT-APEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP 214
Query: 643 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 696
G S N + L Y + + +E+ ++ + C ++ P +RP+ E
Sbjct: 215 GMS--NPEVIRALERGYR---MPRPENCPEEL---YNIMMRCWKNRPEERPTFE 260
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 27/271 (9%)
Query: 446 FNSTECEEA-ARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLI 504
+ E EE R CKA V++K+IE + R + E + ++ V H N++
Sbjct: 8 YKEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESERKAFIVE-LRQLSRVNHPNIV 65
Query: 505 RLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRD---WAAKYKI--VLGVARGLCFLHHDC 559
+L G C N L+ +Y G+L + + A + + L ++G+ +LH
Sbjct: 66 KLYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ 123
Query: 560 YPAIPHGDLKASNIVFDENMEP-HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEE 618
A+ H DLK N++ + +FG Q + AW + E +
Sbjct: 124 PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWM-APEVFEGSNYS 182
Query: 619 MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE----MYNENEVGSSSSLQDEI 674
DV+ +G I+ E++T + KP D + G M+ + +++
Sbjct: 183 EKCDVFSWGIILWEVIT-----------RRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLP 231
Query: 675 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
K + + C PS RPSMEE +K+++ L
Sbjct: 232 KPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 262
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 27/271 (9%)
Query: 446 FNSTECEEA-ARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLI 504
+ E EE R CKA V++K+IE + R + E + ++ V H N++
Sbjct: 7 YKEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESERKAFIVE-LRQLSRVNHPNIV 64
Query: 505 RLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRD---WAAKYKI--VLGVARGLCFLHHDC 559
+L G C N L+ +Y G+L + + A + + L ++G+ +LH
Sbjct: 65 KLYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ 122
Query: 560 YPAIPHGDLKASNIVFDENMEP-HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEE 618
A+ H DLK N++ + +FG Q + AW + E +
Sbjct: 123 PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWM-APEVFEGSNYS 181
Query: 619 MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE----MYNENEVGSSSSLQDEI 674
DV+ +G I+ E++T + KP D + G M+ + +++
Sbjct: 182 EKCDVFSWGIILWEVIT-----------RRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLP 230
Query: 675 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
K + + C PS RPSMEE +K+++ L
Sbjct: 231 KPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 45 VAIKTLKPGTMSPEAFLQEAQVMKKIRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 103
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 158 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 213
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 93/237 (39%), Gaps = 48/237 (20%)
Query: 490 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG-- 547
E + ++G H N+I LLG C +R YL +Y P+GNL + +R R +
Sbjct: 77 EVLCKLG--HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANS 134
Query: 548 ----------------VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--- 588
VARG+ +L H DL A NI+ EN +A+FG
Sbjct: 135 TASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRG 191
Query: 589 -KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 647
+ + G P + ES N DV+ +G ++ EI+ SL
Sbjct: 192 QEVYVKKTMGRLPVRWMAIES---LNYSVYTTNSDVWSYGVLLWEIV----------SLG 238
Query: 648 NKPIDGL-LGEMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 699
P G+ E+Y + G + DE V D+ C R P +RPS + L
Sbjct: 239 GTPYCGMTCAELYEKLPQGYRLEKPLNCDDE---VYDLMRQCWREKPYERPSFAQIL 292
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 38 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 96
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 97 KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 150
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 151 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 206
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 207 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 256
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 211 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 269
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 270 KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 323
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 324 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 379
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 380 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 211 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 269
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 270 KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 323
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 324 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 379
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 380 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Query: 471 ITVSVKKIE--WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 528
I V +K IE G + V++ + IG++ H +++RLLG C L+ YLP G+L
Sbjct: 61 IPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGS-SLQLVTQYLPLGSL 119
Query: 529 SEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ +R R ++ + +A+G+ +L + H +L A N++ + +A+
Sbjct: 120 LDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVAD 176
Query: 586 FGFKYL-----TQL--ADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L QL ++ P K ES F + DV+ +G + E++T G
Sbjct: 177 FGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQS---DVWSYGVTVWELMTFGA 233
Query: 639 LTNAGSSLQNKP 650
AG L P
Sbjct: 234 EPYAGLRLAEVP 245
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 93/237 (39%), Gaps = 48/237 (20%)
Query: 490 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG-- 547
E + ++G H N+I LLG C +R YL +Y P+GNL + +R R +
Sbjct: 67 EVLCKLG--HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANS 124
Query: 548 ----------------VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--- 588
VARG+ +L H DL A NI+ EN +A+FG
Sbjct: 125 TASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRG 181
Query: 589 -KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 647
+ + G P + ES N DV+ +G ++ EI+ SL
Sbjct: 182 QEVYVKKTMGRLPVRWMAIES---LNYSVYTTNSDVWSYGVLLWEIV----------SLG 228
Query: 648 NKPIDGL-LGEMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 699
P G+ E+Y + G + DE V D+ C R P +RPS + L
Sbjct: 229 GTPYCGMTCAELYEKLPQGYRLEKPLNCDDE---VYDLMRQCWREKPYERPSFAQIL 282
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Query: 471 ITVSVKKIE--WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 528
I V +K IE G + V++ + IG++ H +++RLLG C L+ YLP G+L
Sbjct: 43 IPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGS-SLQLVTQYLPLGSL 101
Query: 529 SEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ +R R ++ + +A+G+ +L + H +L A N++ + +A+
Sbjct: 102 LDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVAD 158
Query: 586 FGFKYL-----TQL--ADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L QL ++ P K ES F + DV+ +G + E++T G
Sbjct: 159 FGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQS---DVWSYGVTVWELMTFGA 215
Query: 639 LTNAGSSLQNKP 650
AG L P
Sbjct: 216 EPYAGLRLAEVP 227
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 34 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 92
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 93 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 146
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 147 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 202
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 203 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 252
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 45 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVIEYMSKGSLLDFL 103
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 158 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 213
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 36 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 94
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 95 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 148
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 149 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 204
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 205 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 254
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 45 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 103
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 158 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 213
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 45 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVCEYMSKGSLLDFL 103
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 158 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 213
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 45 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVIEYMSKGSLLDFL 103
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 586 FGFKYL------TQLADGSFPAKIAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L T FP I WT Y + DV+ FG ++ E+ T GR
Sbjct: 158 FGLARLIEDNEXTARQGAKFP--IKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 213
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 211 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVGEYMSKGSLLDFL 269
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 270 KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 323
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 324 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 379
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 380 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 42 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMNKGSLLDFL 100
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 101 KGE---TGKYLRLPQLVDMSAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 154
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 155 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 210
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 211 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 260
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 57/259 (22%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFC--------------- 510
T + V+VK ++ + + + EF++ ++ H N+IRLLG C
Sbjct: 61 TSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVIL 120
Query: 511 ----YNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHG 566
Y YLLY L G ++T K ++ +A G+ +L + + H
Sbjct: 121 PFMKYGDLHTYLLYSRLETGPKHIPLQT------LLKFMVDIALGMEYLSNRNF---LHR 171
Query: 567 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 619
DL A N + ++M +A+FG Y Q P K ES + + +
Sbjct: 172 DLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIES------LADRV 225
Query: 620 YM---DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS-SSLQDEIK 675
Y DV+ FG + EI T G G +QN EMY+ G +D +
Sbjct: 226 YTSKSDVWAFGVTMWEIATRGMTPYPG--VQNH-------EMYDYLLHGHRLKQPEDCLD 276
Query: 676 LVLDVALLCTRSTPSDRPS 694
+ ++ C R+ P DRP+
Sbjct: 277 ELYEIMYSCWRTDPLDRPT 295
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 36/262 (13%)
Query: 469 TGITVSVKK-IEWGATRI--KIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KK +E ++ KI I + +RH+NL+ LL C + + YL+++++ +
Sbjct: 49 TGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDH 108
Query: 526 GNLS--EKIRTKRDWAAKYKIVLGVARGLCFLH-HDCYPAIPHGDLKASNIVFDENMEPH 582
L E D+ K + + G+ F H H+ I H D+K NI+ ++
Sbjct: 109 TILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHN----IIHRDIKPENILVSQSGVVK 164
Query: 583 LAEFGFKYLTQLADGSFPAKIA--WTESGE-FYNAMKEEMYMDVYGFGEIILEILTNGRL 639
L +FGF + ++A W + E +K +DV+ G ++ E+ L
Sbjct: 165 LCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPL 224
Query: 640 TNAGSSL-QNKPIDGLLG-------EMYNENEVGSSSSLQDEIK--------------LV 677
S + Q I LG E++N+N V + L EIK +V
Sbjct: 225 FPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLP-EIKEREPLERRYPKLSEVV 283
Query: 678 LDVALLCTRSTPSDRPSMEEAL 699
+D+A C P RP E L
Sbjct: 284 IDLAKKCLHIDPDKRPFCAELL 305
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 109/234 (46%), Gaps = 25/234 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ ++ + T++H L++L + Y++ +++ G+L + +
Sbjct: 215 VAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV-TKEPIYIITEFMAKGSLLDFL 273
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
++ K+ +A G+ F+ Y H DL+A+NI+ ++ +A+FG
Sbjct: 274 KSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYI---HRDLRAANILVSASLVCKIADFGL 330
Query: 589 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
+ + D + A+ I WT + E N + DV+ FG +++EI+T GR+
Sbjct: 331 ARV--IEDNEYTAREGAKFPIKWT-APEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP 387
Query: 643 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 696
G S N + L Y + + +E+ ++ + C ++ P +RP+ E
Sbjct: 388 GMS--NPEVIRALERGYR---MPRPENCPEEL---YNIMMRCWKNRPEERPTFE 433
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 106/228 (46%), Gaps = 23/228 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK ++ G+ ++ + T++H L++L + Y++ +++ G+L + +
Sbjct: 209 VAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV-TKEPIYIITEFMAKGSLLDFL 267
Query: 533 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
++ K+ +A G+ F+ Y H DL+A+NI+ ++ +A+FG
Sbjct: 268 KSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYI---HRDLRAANILVSASLVCKIADFGL 324
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN 648
+ FP I WT + E N + DV+ FG +++EI+T GR+ G S N
Sbjct: 325 ARV----GAKFP--IKWT-APEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--N 375
Query: 649 KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 696
+ L Y + + +E+ ++ + C ++ P +RP+ E
Sbjct: 376 PEVIRALERGYR---MPRPENCPEEL---YNIMMRCWKNRPEERPTFE 417
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G L + +
Sbjct: 45 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVMEYMSKGCLLDFL 103
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 158 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 213
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 42 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMNKGSLLDFL 100
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 101 KGE---TGKYLRLPQLVDMSAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 154
Query: 586 FGFKYL------TQLADGSFPAKIAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L T FP I WT Y + DV+ FG ++ E+ T GR
Sbjct: 155 FGLARLIEDNEWTARQGAKFP--IKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 210
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 211 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 260
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 37/215 (17%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKY-------KIVLGVAR 550
+RH+ L++L + Y++ +Y+ G+L + ++ + KY + +A
Sbjct: 237 LRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGE---MGKYLRLPQLVDMAAQIAS 292
Query: 551 GLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK------IA 604
G+ ++ Y H DL+A+NI+ EN+ +A+FG L + D + A+ I
Sbjct: 293 GMAYVERMNYV---HRDLRAANILVGENLVCKVADFGLGRL--IEDNEYTARQGAKFPIK 347
Query: 605 WTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG-EMYNEN 662
WT Y + DV+ FG ++ E+ T GR+ P G++ E+ ++
Sbjct: 348 WTAPEAALYGRFT--IKSDVWSFGILLTELTTKGRV----------PYPGMVNREVLDQV 395
Query: 663 EVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
E G E L D+ C R P +RP+ E
Sbjct: 396 ERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 430
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G L + +
Sbjct: 45 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGCLLDFL 103
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 158 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 213
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + Y++ +Y+ G+L + +
Sbjct: 45 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 103
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL A+NI+ EN+ +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLAAANILVGENLVCKVAD 157
Query: 586 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L + D + A+ I WT Y + DV+ FG ++ E+ T GR
Sbjct: 158 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 213
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 48/237 (20%)
Query: 490 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG-- 547
E + ++G H N+I LLG C +R YL +Y P+GNL + +R R +
Sbjct: 74 EVLCKLG--HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANS 131
Query: 548 ----------------VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--- 588
VARG+ +L + H +L A NI+ EN +A+FG
Sbjct: 132 TASTLSSQQLLHFAADVARGMDYLSQKQF---IHRNLAARNILVGENYVAKIADFGLSRG 188
Query: 589 -KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 647
+ + G P + ES N DV+ +G ++ EI+ SL
Sbjct: 189 QEVYVKKTMGRLPVRWMAIES---LNYSVYTTNSDVWSYGVLLWEIV----------SLG 235
Query: 648 NKPIDGL-LGEMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 699
P G+ E+Y + G + DE V D+ C R P +RPS + L
Sbjct: 236 GTPYCGMTCAELYEKLPQGYRLEKPLNCDDE---VYDLMRQCWREKPYERPSFAQIL 289
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
+ V++K ++ G T + V +F+ +G H N+IRL G ++ +Y+ NG
Sbjct: 74 VPVAIKTLKAGYTEKQRV-DFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGA 132
Query: 528 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L + +R K + ++V G+A G+ +L + Y H DL A NI+ + N+ ++
Sbjct: 133 LDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY---VHRDLAARNILVNSNLVCKVS 189
Query: 585 EFGFKYLTQ--------LADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
+FG + + + G P I WT + E + K DV+ FG ++ E++T
Sbjct: 190 DFGLSRVLEDDPEATYTTSGGKIP--IRWT-APEAISYRKFTSASDVWSFGIVMWEVMTY 246
Query: 637 G 637
G
Sbjct: 247 G 247
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Query: 220 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 279
L +T + + YN Q +++E+ L +A L+ +LT+L+ L+L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 280 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 339
QL F R+T LK L L+ N+L +F L NL+ LSL N++ + +
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 340 LPSLEILFIWNNYFSGSLPENLG-----RNSKLRWVDVSTNNFNGSIPPDICSGGVLFKL 394
L L+ + ++ N F S E L R + + D + N + S CS G + +
Sbjct: 178 LGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVRT 237
Query: 395 I 395
+
Sbjct: 238 V 238
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 2/158 (1%)
Query: 245 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 304
++ + LD+ L+ LTKL L L NQL F +T L +L L++N+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 305 LSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN 364
L+ F L L L L N++ +L L+ L + N +
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 365 SKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNF 401
+ L+ + +STN S+P G L + LF N F
Sbjct: 155 TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 33/255 (12%)
Query: 474 SVKKIEWGATRIKI------------VSEFITRIGTV---RHKNLIRLLGFCYNRHQAYL 518
+V + EW + + + V+EF+ + + RH N++ +G +
Sbjct: 52 TVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI 111
Query: 519 LYDYLPNGNLSEKI-----RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 573
+ +YL G+L + R + D + + VA+G+ +LH+ P I H +LK+ N+
Sbjct: 112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNL 170
Query: 574 VFDENMEPHLAEFGFKYL---TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEII 630
+ D+ + +FG L T L+ S W + E DVY FG I+
Sbjct: 171 LVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKS-DVYSFGVIL 229
Query: 631 LEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPS 690
E+ T L +L + +G E+ +L ++ +++ C + P
Sbjct: 230 WELAT---LQQPWGNLNPAQVVAAVGFKCKRLEI--PRNLNPQVAAIIEG---CWTNEPW 281
Query: 691 DRPSMEEALKLLSGL 705
RPS + LL L
Sbjct: 282 KRPSFATIMDLLRPL 296
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 25/210 (11%)
Query: 143 GGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA-GSYFSGPIPSQFGSFKSLEF 201
QS RNL +L SN+ +G A + L L+ L+L+ + P+ F L
Sbjct: 49 ASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT 108
Query: 202 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI 261
LHL G+ E+G ++G ++ +QYL + NL
Sbjct: 109 LHLD----------RCGL------QELGPGLFRG--------LAALQYLYLQDNNLQALP 144
Query: 262 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRL 321
+L L LFL N++ F + +L L L N ++ P +F DL L
Sbjct: 145 DNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMT 204
Query: 322 LSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
L L N +S E LV L SL+ L + +N
Sbjct: 205 LYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 6/179 (3%)
Query: 189 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ 248
+P+ + FLH GN ++ A + +T + + N G ++ ++
Sbjct: 25 VPTGIPASSQRIFLH--GNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLE 82
Query: 249 YLDIA-GANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 307
LD++ A L P L L +L L R L P F + L+ L L DN L
Sbjct: 83 QLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
Query: 308 PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLP---ENLGR 363
+F DL NL L L N + + L SL+ L + N+ + P +LGR
Sbjct: 143 LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGR 201
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 1/176 (0%)
Query: 180 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNI-P 238
L G+ S + F S ++L L L N L A L + +++ N + P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 239 WQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSL 298
+ + L + L P L L+ L+L N L F + L L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 299 DLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 354
L NR+ +F L +L L L N ++ P + L L L+++ N S
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 212 QIPAELGMLKTVTHME-IGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTK 270
+ P E L TV G IP + + YLD N +PKELSN
Sbjct: 3 RCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTEL----YLD---GNQFTLVPKELSNYKH 55
Query: 271 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 330
L + L N+++ FS +T L +L LS NRL P +F LK+LRLLSL N++S
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 331 GTVPE 335
VPE
Sbjct: 116 -VVPE 119
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 257 LSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADL 316
L IP++++ L+L NQ VP E S L +DLS+NR+S +SF+++
Sbjct: 25 LPKGIPRDVT------ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77
Query: 317 KNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 354
L L L YN + P + L SL +L + N S
Sbjct: 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 218 GMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLF 277
G+ + VT + + N + +P +L N + +D++ +S + SN+T+L +L L
Sbjct: 28 GIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 278 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYNEM 329
N+L P F + +L+ L L N +S +PE +F DL L L++ N +
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPL 138
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 81/202 (40%), Gaps = 38/202 (18%)
Query: 68 VKCNKNNTIVVGINLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSL 127
+C +T+V N +K L +P ++ +L L N F+ P E+ N L
Sbjct: 6 TECTCLDTVVRCSNKGLKVLPKGIP--------RDVTELYLDGNQFT-LVPKELSNYKHL 56
Query: 128 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSG 187
+D+S N I +L N +FSN + L L L+ +
Sbjct: 57 TLIDLSNNR--------ISTLSN----QSFSN------------MTQLLTLILSYNRLRC 92
Query: 188 PIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYN--FYQGNIPWQLGNMS 245
P F KSL L L GN ++ L ++H+ IG N + N+ W L +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW-LSDWV 151
Query: 246 EVQYLDIAGANLSGSIPKELSN 267
+ +Y + A +G P E+++
Sbjct: 152 KSEYKEPGIARCAG--PGEMAD 171
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 45 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 103
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 104 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 157
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 158 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 216
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 217 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 267
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 268 FEQIVSILDKL 278
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 23/182 (12%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 62 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 120
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 121 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 174
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 175 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 233
Query: 636 NG 637
G
Sbjct: 234 YG 235
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 74 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 187 KVSDFGLARVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 297 FEQIVSILDKL 307
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 74 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 297 FEQIVSILDKL 307
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 37/240 (15%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + + + +RH+ L++L + ++ +Y+ G+L + +
Sbjct: 35 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIXIVTEYMSKGSLLDFL 93
Query: 533 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
+ + KY + +A G+ ++ Y H DL+A+NI+ EN+ +A+
Sbjct: 94 KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 147
Query: 586 FGFKYL------TQLADGSFPAKIAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
FG L T FP I WT Y + DV+ FG ++ E+ T GR
Sbjct: 148 FGLARLIEDNEXTARQGAKFP--IKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 203
Query: 639 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
+ P G++ E+ ++ E G E L D+ C R P +RP+ E
Sbjct: 204 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 253
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 74 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 187 KVSDFGLGRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 297 FEQIVSILDKL 307
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 74 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 297 FEQIVSILDKL 307
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 74 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 297 FEQIVSILDKL 307
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 4/182 (2%)
Query: 154 LDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQI 213
LD SN S +L L++L L + F K+LE L + N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 214 PAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLE 272
L + + + N + P +++++ YL + G N S+PK + LT L+
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL-GYNELQSLPKGVFDKLTSLK 160
Query: 273 SLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYNEMSG 331
L L+ NQL F ++T LK+L L +N+L +PE +F L+ L++L L N
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDC 219
Query: 332 TV 333
T
Sbjct: 220 TC 221
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 24/201 (11%)
Query: 160 SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 219
+ ++PA+ K L+L + S F L L+L N L +PA G+
Sbjct: 30 AIPSNIPADT------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPA--GI 80
Query: 220 LKTVTHME---IGYNFYQGNIPW----QLGNMSEVQYLDIAGANLSGSIPKELSNLTKLE 272
K + ++E + N Q +P QL N++E++ + L P+ +LTKL
Sbjct: 81 FKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLT 136
Query: 273 SLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYNEMSG 331
L L N+L F ++T+LK L L +N+L +PE +F L L+ L L N++
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK- 194
Query: 332 TVPE-SLVQLPSLEILFIWNN 351
VPE + L L++L + N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 257 LSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADL 316
L I KEL NL E+L++ N+L F ++ L L L N+L P F L
Sbjct: 76 LPAGIFKELKNL---ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 317 KNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPE 359
L LSL YNE+ +L SL+ L ++NN +PE
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE 174
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 4/151 (2%)
Query: 250 LDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI 309
+D + L+ +IP + TK L L N+L+ F R+T L+ L L+DN+L
Sbjct: 21 VDCSSKKLT-AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 310 PESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRW 369
F +LKNL L + N++ QL +L L + N P +KL +
Sbjct: 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 370 VDVSTNNFNGSIPPDICSGGVLFKLILFSNN 400
+ + N S+P + K + NN
Sbjct: 138 LSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 72 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 130
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 131 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 184
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 185 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 243
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 244 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 294
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 295 FEQIVSILDKL 305
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 74 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 297 FEQIVSILDKL 307
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Query: 220 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 279
L +T + + YN Q +++E+ L +A L+ +LT+L+ L+L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 280 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 339
QL F R+T LK L L+ N+L +F L NL+ LSL N++ + +
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 340 LPSLEILFIWNNYFSGSLPENLG-----RNSKLRWVDVSTNNFNGSIPPDICSGGVLFKL 394
L L+ + ++ N F S E L R + + D + N + S CS G + +
Sbjct: 178 LGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVRT 237
Query: 395 I 395
+
Sbjct: 238 V 238
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 2/158 (1%)
Query: 245 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 304
++ + LD+ L+ LTKL L L NQL F +T L +L L++N+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 305 LSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN 364
L+ F L L L L N++ +L L+ L + N +
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 365 SKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNF 401
+ L+ + +STN S+P G L + LF N F
Sbjct: 155 TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 471 ITVSVKKI-EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY--LLYDYLPNGN 527
I V V K+ +W + + +E R+ H N++ +LG C + + L+ ++P G+
Sbjct: 36 IVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGS 95
Query: 528 L----SEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
L E D + K L +ARG+ FLH P IP L + +++ DE+M +
Sbjct: 96 LYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH-TLEPLIPRHALNSRSVMIDEDMTARI 154
Query: 584 A----EFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
+ +F F+ ++ ++ A A + E N D++ F ++ E++T
Sbjct: 155 SMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTN----RRSADMWSFAVLLWELVTR 207
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 101/255 (39%), Gaps = 33/255 (12%)
Query: 474 SVKKIEWGATRIKI------------VSEFITRIGTV---RHKNLIRLLGFCYNRHQAYL 518
+V + EW + + + V+EF+ + + RH N++ +G +
Sbjct: 52 TVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI 111
Query: 519 LYDYLPNGNLSEKI-----RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 573
+ +YL G+L + R + D + + VA+G+ +LH+ P I H DLK+ N+
Sbjct: 112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRDLKSPNL 170
Query: 574 VFDENMEPHLAEFGFKYLTQ---LADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEII 630
+ D+ + +FG L L W + E DVY FG I+
Sbjct: 171 LVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPSNEKS-DVYSFGVIL 229
Query: 631 LEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPS 690
E+ T L +L + +G E+ +L ++ +++ C + P
Sbjct: 230 WELAT---LQQPWGNLNPAQVVAAVGFKCKRLEI--PRNLNPQVAAIIEG---CWTNEPW 281
Query: 691 DRPSMEEALKLLSGL 705
RPS + LL L
Sbjct: 282 KRPSFATIMDLLRPL 296
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 27/248 (10%)
Query: 471 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
+ V++K ++ G T R +SE + +G H N+IRL G A ++ +Y+ NG+
Sbjct: 78 VPVAIKALKAGYTERQRRDFLSE-ASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGS 136
Query: 528 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L +RT ++V GV G+ +L Y H DL A N++ D N+ ++
Sbjct: 137 LDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY---VHRDLAARNVLVDSNLVCKVS 193
Query: 585 EFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
+FG + L D ++ I WT + E DV+ FG ++ E+L G
Sbjct: 194 DFGLSRVLEDDPDAAYTTTGGKIPIRWT-APEAIAFRTFSSASDVWSFGVVMWEVLAYGE 252
Query: 639 LTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
++ N+ + + E Y +G +L +L+LD C + RP +
Sbjct: 253 --RPYWNMTNRDVISSVEEGYRLPAPMGCPHALH---QLMLD----CWHKDRAQRPRFSQ 303
Query: 698 ALKLLSGL 705
+ +L L
Sbjct: 304 IVSVLDAL 311
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 471 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
+ V++K ++ G T R +SE + +G H N+IRL G A ++ +Y+ NG+
Sbjct: 78 VPVAIKALKAGYTERQRRDFLSE-ASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGS 136
Query: 528 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L +RT ++V GV G+ +L Y H DL A N++ D N+ ++
Sbjct: 137 LDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY---VHRDLAARNVLVDSNLVCKVS 193
Query: 585 EFGFKYLTQ--------LADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
+FG + + G P + E+ F DV+ FG ++ E+L
Sbjct: 194 DFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTFSSAS---DVWSFGVVMWEVLAY 250
Query: 637 GRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM 695
G ++ N+ + + E Y +G +L +L+LD C + RP
Sbjct: 251 GE--RPYWNMTNRDVISSVEEGYRLPAPMGCPHALH---QLMLD----CWHKDRAQRPRF 301
Query: 696 EEALKLLSGL 705
+ + +L L
Sbjct: 302 SQIVSVLDAL 311
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ +Y+ NG+
Sbjct: 74 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L H DL A NI+ + N+
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSD---MGFVHRDLAARNILINSNLVC 186
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 297 FEQIVSILDKL 307
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 56 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 525 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 565
GNLS +R+KR+ YK+ VA+G+ FL C H
Sbjct: 116 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 171
Query: 566 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 620
DL A NI+ E + +FG +K + G + W ++ + +
Sbjct: 172 RDLAARNILLSEKNVVKICDFGLARDIYKDPDXVRKGDARLPLKWMAPETIFDRVY-TIQ 230
Query: 621 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 680
DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 231 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 282
Query: 681 ALL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 283 TMLDCWHGEPSQRPTFSELVEHLGNL 308
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 27/231 (11%)
Query: 126 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYF 185
S+ SL++ + FS Q L LD + G +P+ + L LK L L+ ++F
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 186 SGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMS 245
+F SL L++ GN V + +G + +LGN+
Sbjct: 311 DQLCQISAANFPSLTHLYIRGN---------------VKKLHLGVGCLE-----KLGNL- 349
Query: 246 EVQYLDIAGANLSGS--IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDN 303
Q LD++ ++ S +L NL+ L++L L N+ G F L+ LDL+
Sbjct: 350 --QTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 304 RLSGPIPES-FADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 353
RL P+S F +L L++L+L Y + + L LP L L + N+F
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 103 LVDLNLSHNSF--SGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLD-AFSN 159
L L+LSHN S +++ NL+ L +L++S N G + L +LD AF+
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 160 SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 219
+ + L L+VLNL + L L+L GN D + +
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNL 468
Query: 220 LKTVTHMEI 228
L+TV +E+
Sbjct: 469 LQTVGSLEV 477
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 42/252 (16%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK I+ G+ + + + H L++ G C + Y++ +Y+ NG L +
Sbjct: 35 VAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYL 94
Query: 533 RTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF- 588
R+ + + ++ V G+ FL H DL A N + D ++ +++FG
Sbjct: 95 RSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMT 151
Query: 589 ------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 642
+Y++ + FP K W+ + E ++ K DV+ FG ++ E+ + G++
Sbjct: 152 RYVLDDQYVSSVGT-KFPVK--WS-APEVFHYFKYSSKSDVWAFGILMWEVFSLGKM--- 204
Query: 643 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-------KLVLDVALLCTRSTPSDRPSM 695
P D +Y +EV S + + + C P RP+
Sbjct: 205 -------PYD-----LYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTF 252
Query: 696 EEALKLLSGLKP 707
++ LLS ++P
Sbjct: 253 QQ---LLSSIEP 261
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 93 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 152
Query: 525 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 565
GNLS +R+KR+ YK+ VA+G+ FL C H
Sbjct: 153 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 208
Query: 566 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 620
DL A NI+ E + +FG +K + G + W ++ + +
Sbjct: 209 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 267
Query: 621 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 680
DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 268 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 319
Query: 681 ALL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 320 TMLDCWHGEPSQRPTFSELVEHLGNL 345
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 56 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 525 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 565
GNLS +R+KR+ YK+ VA+G+ FL C H
Sbjct: 116 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 171
Query: 566 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 620
DL A NI+ E + +FG +K + G + W ++ + +
Sbjct: 172 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 230
Query: 621 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 680
DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 231 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 282
Query: 681 ALL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 283 TMLDCWHGEPSQRPTFSELVEHLGNL 308
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 46/268 (17%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 56 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 525 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 565
GNLS +R+KR+ YK+ VA+G+ FL C H
Sbjct: 116 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 171
Query: 566 GDLKASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEE 618
DL A NI+ E + +FG + D P K W ++ +
Sbjct: 172 RDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-T 228
Query: 619 MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL 678
+ DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 229 IQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEM 280
Query: 679 DVALL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 281 YQTMLDCWHGEPSQRPTFSELVEHLGNL 308
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 32/186 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYDYLPNGNL 528
G V+VK I+ AT ++E + + +RH NL++LLG Y++ +Y+ G+L
Sbjct: 44 GNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 102
Query: 529 SEKIRTKRDWAAKYKIVLGVARGLCFLHH--DCYPAIP--------HGDLKASNIVFDEN 578
+ +R++ + VLG G C L D A+ H DL A N++ E+
Sbjct: 103 VDYLRSRG------RSVLG---GDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSED 153
Query: 579 MEPHLAEFGF-KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEI 633
+++FG K + D G P K WT A++E+ + DV+ FG ++ EI
Sbjct: 154 NVAKVSDFGLTKEASSTQDTGKLPVK--WTAP----EALREKKFSTKSDVWSFGILLWEI 207
Query: 634 LTNGRL 639
+ GR+
Sbjct: 208 YSFGRV 213
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 39/230 (16%)
Query: 496 GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR-------DWAAKYKIVLGV 548
++H N+I L G C L+ ++ G L+ + KR +WA + +
Sbjct: 61 AMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQ------I 114
Query: 549 ARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP--------HLAEFGF-KYLTQLADGSF 599
ARG+ +LH + I H DLK+SNI+ + +E + +FG + + S
Sbjct: 115 ARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSA 174
Query: 600 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGL---LG 656
AW + E A DV+ +G ++ E+LT G + G IDGL G
Sbjct: 175 AGAYAWM-APEVIRASMFSKGSDVWSYGVLLWELLT-GEVPFRG-------IDGLAVAYG 225
Query: 657 EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
N+ + S+ + KL+ D C P RPS L L+ +
Sbjct: 226 VAMNKLALPIPSTCPEPFAKLMED----CWNPDPHSRPSFTNILDQLTTI 271
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 47 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCK 106
Query: 525 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 565
GNLS +R+KR+ YK+ VA+G+ FL C H
Sbjct: 107 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 162
Query: 566 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 620
DL A NI+ E + +FG +K + G + W ++ + +
Sbjct: 163 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 221
Query: 621 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 680
DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 222 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 273
Query: 681 ALL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 274 TMLDCWHGEPSQRPTFSELVEHLGNL 299
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 20/180 (11%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYDYLPNGNL 528
G V+VK I+ AT ++E + + +RH NL++LLG Y++ +Y+ G+L
Sbjct: 35 GNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 93
Query: 529 SEKIRTKRDWA----AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ +R++ K L V + +L + + H DL A N++ E+ ++
Sbjct: 94 VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFV---HRDLAARNVLVSEDNVAKVS 150
Query: 585 EFGF-KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRL 639
+FG K + D G P K WT A++E + DV+ FG ++ EI + GR+
Sbjct: 151 DFGLTKEASSTQDTGKLPVK--WTAP----EALREAAFSTKSDVWSFGILLWEIYSFGRV 204
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 47 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCK 106
Query: 525 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 565
GNLS +R+KR+ YK+ VA+G+ FL C H
Sbjct: 107 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 162
Query: 566 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 620
DL A NI+ E + +FG +K + G + W ++ + +
Sbjct: 163 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 221
Query: 621 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 680
DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 222 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 273
Query: 681 ALL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 274 TMLDCWHGEPSQRPTFSELVEHLGNL 299
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 20/180 (11%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYDYLPNGNL 528
G V+VK I+ AT ++E + + +RH NL++LLG Y++ +Y+ G+L
Sbjct: 29 GNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 87
Query: 529 SEKIRTKRDWA----AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ +R++ K L V + +L + + H DL A N++ E+ ++
Sbjct: 88 VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFV---HRDLAARNVLVSEDNVAKVS 144
Query: 585 EFGF-KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRL 639
+FG K + D G P K WT A++E+ + DV+ FG ++ EI + GR+
Sbjct: 145 DFGLTKEASSTQDTGKLPVK--WTAP----EALREKKFSTKSDVWSFGILLWEIYSFGRV 198
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 46/268 (17%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 47 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCK 106
Query: 525 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 565
GNLS +R+KR+ YK+ VA+G+ FL C H
Sbjct: 107 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 162
Query: 566 GDLKASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEE 618
DL A NI+ E + +FG + D P K W ++ +
Sbjct: 163 RDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-T 219
Query: 619 MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL 678
+ DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 220 IQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEM 271
Query: 679 DVALL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 272 YQTMLDCWHGEPSQRPTFSELVEHLGNL 299
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 46/268 (17%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 47 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 106
Query: 525 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 565
GNLS +R+KR+ YK+ VA+G+ FL C H
Sbjct: 107 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 162
Query: 566 GDLKASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEE 618
DL A NI+ E + +FG + D P K W ++ +
Sbjct: 163 RDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-T 219
Query: 619 MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL 678
+ DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 220 IQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEM 271
Query: 679 DVALL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 272 YQTMLDCWHGEPSQRPTFSELVEHLGNL 299
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 103/261 (39%), Gaps = 36/261 (13%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 56 TXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 525 NGNLSEKIRTKRDWAAKYKIV--------------LGVARGLCFLHHDCYPAIPHGDLKA 570
GNLS +R+KR+ YK + VA+G+ FL H DL A
Sbjct: 116 FGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLIXYSFQVAKGMEFL---ASRKXIHRDLAA 172
Query: 571 SNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYG 625
NI+ E + +FG +K + G + W ++ + + DV+
Sbjct: 173 RNILLSEKNVVKIXDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQSDVWS 231
Query: 626 FGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL-C 684
FG ++ EI + G G + E + G+ D + +L C
Sbjct: 232 FGVLLWEIFSLGASPYPGVKIDE--------EFXRRLKEGTRMRAPDYTTPEMYQTMLDC 283
Query: 685 TRSTPSDRPSMEEALKLLSGL 705
PS RP+ E ++ L L
Sbjct: 284 WHGEPSQRPTFSELVEHLGNL 304
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 23/182 (12%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ + + NG+
Sbjct: 45 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGS 103
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 104 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 157
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 158 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 216
Query: 636 NG 637
G
Sbjct: 217 YG 218
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 103/261 (39%), Gaps = 36/261 (13%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 56 TXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 525 NGNLSEKIRTKRDWAAKYKIV--------------LGVARGLCFLHHDCYPAIPHGDLKA 570
GNLS +R+KR+ YK + VA+G+ FL H DL A
Sbjct: 116 FGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKXIHRDLAA 172
Query: 571 SNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYG 625
NI+ E + +FG +K + G + W ++ + + DV+
Sbjct: 173 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQSDVWS 231
Query: 626 FGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL-C 684
FG ++ EI + G G + E + G+ D + +L C
Sbjct: 232 FGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQTMLDC 283
Query: 685 TRSTPSDRPSMEEALKLLSGL 705
PS RP+ E ++ L L
Sbjct: 284 WHGEPSQRPTFSELVEHLGNL 304
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 136 NFSGHFPGG-IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA-GSYFSGPIPSQF 193
N H P ++ RNL +L SN + A + L L+ L+L+ + P+ F
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 194 GSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIA 253
L LHL G+ E+G ++G ++ +QYL +
Sbjct: 101 HGLGRLHTLHLD----------RCGL------QELGPGLFRG--------LAALQYLYLQ 136
Query: 254 GANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESF 313
L +L L LFL N+++ F + +L L L NR++ P +F
Sbjct: 137 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 196
Query: 314 ADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
DL L L L N +S E+L L +L+ L + +N
Sbjct: 197 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 201 FLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIA-GANLSG 259
FLH GN ++ A + +T + + N ++ ++ LD++ A L
Sbjct: 37 FLH--GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 260 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 319
P L +L +L L R L P F + L+ L L DN L ++F DL NL
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 154
Query: 320 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLP---ENLGR 363
L L N +S + L SL+ L + N + P +LGR
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 201
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 1/197 (0%)
Query: 180 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNI-P 238
L G+ S + F + ++L L L N+L A L + +++ N ++ P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 239 WQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSL 298
+ + L + L P L L+ L+L N L F + L L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 299 DLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLP 358
L NR+S +F L +L L L N ++ P + L L L+++ N S
Sbjct: 158 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 217
Query: 359 ENLGRNSKLRWVDVSTN 375
E L L+++ ++ N
Sbjct: 218 EALAPLRALQYLRLNDN 234
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 100/263 (38%), Gaps = 37/263 (14%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 57 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 116
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH-DCYP-------------AIPHGDLKA 570
GNLS +R+KR+ YK + + L H CY H DL A
Sbjct: 117 FGNLSTYLRSKRNEFVPYKTPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAA 176
Query: 571 SNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEEMYMDV 623
NI+ E + +FG + D P K W ++ + + DV
Sbjct: 177 RNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-TIQSDV 233
Query: 624 YGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL 683
+ FG ++ EI + G G + E + G+ D + +L
Sbjct: 234 WSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQTML 285
Query: 684 -CTRSTPSDRPSMEEALKLLSGL 705
C PS RP+ E ++ L L
Sbjct: 286 DCWHGEPSQRPTFSELVEHLGNL 308
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 20/180 (11%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYDYLPNGNL 528
G V+VK I+ AT ++E + + +RH NL++LLG Y++ +Y+ G+L
Sbjct: 216 GNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 274
Query: 529 SEKIRTKRDWA----AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ +R++ K L V + +L + + H DL A N++ E+ ++
Sbjct: 275 VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFV---HRDLAARNVLVSEDNVAKVS 331
Query: 585 EFGF-KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRL 639
+FG K + D G P K WT A++E+ + DV+ FG ++ EI + GR+
Sbjct: 332 DFGLTKEASSTQDTGKLPVK--WTAP----EALREKKFSTKSDVWSFGILLWEIYSFGRV 385
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ + + NG+
Sbjct: 74 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGS 132
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L Y H DL A NI+ + N+
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 297 FEQIVSILDKL 307
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 136 NFSGHFPGG-IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA-GSYFSGPIPSQF 193
N H P ++ RNL +L SN + A + L L+ L+L+ + P+ F
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 194 GSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIA 253
L LHL G+ E+G ++G ++ +QYL +
Sbjct: 102 HGLGRLHTLHLD----------RCGL------QELGPGLFRG--------LAALQYLYLQ 137
Query: 254 GANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESF 313
L +L L LFL N+++ F + +L L L NR++ P +F
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 314 ADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
DL L L L N +S E+L L +L+ L + +N
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 201 FLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIA-GANLSG 259
FLH GN ++ A + +T + + N ++ ++ LD++ A L
Sbjct: 38 FLH--GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 260 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 319
P L +L +L L R L P F + L+ L L DN L ++F DL NL
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 320 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLP---ENLGR 363
L L N +S + L SL+ L + N + P +LGR
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 1/197 (0%)
Query: 180 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNI-P 238
L G+ S + F + ++L L L N+L A L + +++ N ++ P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 239 WQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSL 298
+ + L + L P L L+ L+L N L F + L L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 299 DLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLP 358
L NR+S +F L +L L L N ++ P + L L L+++ N S
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218
Query: 359 ENLGRNSKLRWVDVSTN 375
E L L+++ ++ N
Sbjct: 219 EALAPLRALQYLRLNDN 235
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 22/171 (12%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 129 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 188
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 587
++ L VA+G+ FL + H DL A N + DE +A+FG
Sbjct: 189 PTVKDLIGFGLQVAKGMKFLASKKFV---HRDLAARNCMLDEKFTVKVADFGLARDMYDK 245
Query: 588 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
F + P K ES K DV+ FG ++ E++T G
Sbjct: 246 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 293
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 34/164 (20%)
Query: 498 VRHKNLIRLLGFCY-------NRHQAYLLYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVA 549
+RH+N+ LGF + Q YL+ DY NG+L + ++ T D + K+
Sbjct: 88 MRHENI---LGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSV 144
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGF--KYLTQLADGSFPAK 602
GLC LH + + PAI H DLK+ NI+ +N +A+ G K+++ + P
Sbjct: 145 SGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPN 204
Query: 603 IAWTESGEF-------------YNAMKEEMYMDVYGFGEIILEI 633
T G N + + D+Y FG I+ E+
Sbjct: 205 ---TRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEV 245
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 71 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 130
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 587
++ L VA+G+ FL H DL A N + DE +A+FG
Sbjct: 131 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDK 187
Query: 588 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
F + P K ES K DV+ FG ++ E++T G
Sbjct: 188 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 235
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 38 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 97
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 98 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 154
Query: 583 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+ +FG + F K I W + E K + DV+ FG ++ E+ T
Sbjct: 155 IGDFGLTKVLPQDKEFFKVKEPGESPIFWY-APESLTESKFSVASDVWSFGVVLYELFT 212
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 29/236 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K ++ G + E + ++H L++L + Y++ +Y+ G+L + +
Sbjct: 36 VAIKTLKPGTMSPESFLEEAQIMKKLKHDKLVQLYAVV-SEEPIYIVTEYMNKGSLLDFL 94
Query: 533 RTKRDWAAK----YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+ A K + VA G+ ++ Y H DL+++NI+ + +A+FG
Sbjct: 95 KDGEGRALKLPNLVDMAAQVAAGMAYIERMNYI---HRDLRSANILVGNGLICKIADFGL 151
Query: 589 KYL------TQLADGSFPAKIAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTN 641
L T FP I WT Y + DV+ FG ++ E++T GR+
Sbjct: 152 ARLIEDNEXTARQGAKFP--IKWTAPEAALYGRFT--IKSDVWSFGILLTELVTKGRVPY 207
Query: 642 AGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 696
G + N+ E+ + E G + + L ++ + C + P +RP+ E
Sbjct: 208 PG--MNNR-------EVLEQVERGYRMPCPQDCPISLHELMIHCWKKDPEERPTFE 254
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 75 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 134
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 587
++ L VA+G+ FL H DL A N + DE +A+FG
Sbjct: 135 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 191
Query: 588 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
F + P K ES K DV+ FG ++ E++T G
Sbjct: 192 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 239
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 70 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 129
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 587
++ L VA+G+ FL H DL A N + DE +A+FG
Sbjct: 130 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186
Query: 588 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
F + P K ES K DV+ FG ++ E++T G
Sbjct: 187 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 234
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 71 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 130
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 587
++ L VA+G+ FL H DL A N + DE +A+FG
Sbjct: 131 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 187
Query: 588 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
F + P K ES K DV+ FG ++ E++T G
Sbjct: 188 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 235
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 68 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 127
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 587
++ L VA+G+ FL H DL A N + DE +A+FG
Sbjct: 128 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 184
Query: 588 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
F + P K ES K DV+ FG ++ E++T G
Sbjct: 185 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 232
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 70 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 129
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 587
++ L VA+G+ FL H DL A N + DE +A+FG
Sbjct: 130 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186
Query: 588 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
F + P K ES K DV+ FG ++ E++T G
Sbjct: 187 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 234
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 101/265 (38%), Gaps = 42/265 (15%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 58 TXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 117
Query: 525 NGNLSEKIRTKRDWAAKYK----------------IVLGVARGLCFLHHDCYPAIPHGDL 568
GNLS +R+KR+ YK VA+G+ FL H DL
Sbjct: 118 FGNLSTYLRSKRNEFVPYKPEDLYKDFLTLEHLIXYSFQVAKGMEFL---ASRKXIHRDL 174
Query: 569 KASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEEMYM 621
A NI+ E + +FG + D P K W ++ + +
Sbjct: 175 AARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-TIQS 231
Query: 622 DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA 681
DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 232 DVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQT 283
Query: 682 LL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 284 MLDCWHGEPSQRPTFSELVEHLGNL 308
>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
Length = 330
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 36/181 (19%)
Query: 498 VRHKNLIRLLGFC----YNRH---QAYLLYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVA 549
+RH+N+ LGF +RH Q +L+ Y G+L + ++ T D + +IVL +A
Sbjct: 88 LRHENI---LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIA 144
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGFKYL-----TQLADGS- 598
GL LH + + PAI H DLK+ NI+ +N + +A+ G + QL G+
Sbjct: 145 SGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNN 204
Query: 599 ---------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK 649
P + T + +++ K +D++ FG ++ E+ R+ + G K
Sbjct: 205 PRVGTKRYMAPEVLDETIQVDCFDSYKR---VDIWAFGLVLWEVAR--RMVSNGIVEDYK 259
Query: 650 P 650
P
Sbjct: 260 P 260
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V++K ++ G T + EF++ +G H N+IRL G N +L +++ NG L
Sbjct: 47 VAIKTLKGGYTE-RQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALD 105
Query: 530 EKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
+R ++V G+A G+ +L Y H DL A NI+ + N+ +++F
Sbjct: 106 SFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSY---VHRDLAARNILVNSNLVCKVSDF 162
Query: 587 GFKYL----------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
G T G P I WT + E K D + +G ++ E+++
Sbjct: 163 GLSRFLEENSSDPTETSSLGGKIP--IRWT-APEAIAFRKFTSASDAWSYGIVMWEVMSF 219
Query: 637 G 637
G
Sbjct: 220 G 220
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 42/266 (15%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 58 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 117
Query: 525 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 565
GNLS +R+KR+ YK VA+G+ FL C H
Sbjct: 118 FGNLSTYLRSKRNEFVPYKEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 173
Query: 566 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 620
DL A NI+ E + +FG +K + G + W ++ + +
Sbjct: 174 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 232
Query: 621 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 680
DV+ FG ++ EI + G G + E + G+ D +
Sbjct: 233 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 284
Query: 681 ALL-CTRSTPSDRPSMEEALKLLSGL 705
+L C PS RP+ E ++ L L
Sbjct: 285 TMLDCWHGEPSQRPTFSELVEHLGNL 310
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 25/182 (13%)
Query: 473 VSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V++K ++ G T + EF++ +G H N+IRL G N +L +++ NG L
Sbjct: 45 VAIKTLKGGYTE-RQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALD 103
Query: 530 EKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
+R ++V G+A G+ +L Y H DL A NI+ + N+ +++F
Sbjct: 104 SFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSY---VHRDLAARNILVNSNLVCKVSDF 160
Query: 587 GFK-----------YLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G Y + L G P I WT + E K D + +G ++ E+++
Sbjct: 161 GLSRFLEENSSDPTYTSSLG-GKIP--IRWT-APEAIAFRKFTSASDAWSYGIVMWEVMS 216
Query: 636 NG 637
G
Sbjct: 217 FG 218
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 469 TGITVSVK--KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYLP 524
TG V+VK K E G I + + I + + H+N+++ G C + L+ ++LP
Sbjct: 49 TGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLP 108
Query: 525 NGNLSE---KIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
+G+L E K + K + + K + + +G+ +L Y H DL A N++ + +
Sbjct: 109 SGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQY---VHRDLAARNVLVESEHQV 165
Query: 582 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA----MKEEMYM--DVYGFGEIILEILT 635
+ +FG + K +S F+ A M+ + Y+ DV+ FG + E+LT
Sbjct: 166 KIGDFGLTKAIETDKEXXTVKDD-RDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 224
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 469 TGITVSVK--KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYLP 524
TG V+VK K E G I + + I + + H+N+++ G C + L+ ++LP
Sbjct: 37 TGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLP 96
Query: 525 NGNLSE---KIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
+G+L E K + K + + K + + +G+ +L Y H DL A N++ + +
Sbjct: 97 SGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQY---VHRDLAARNVLVESEHQV 153
Query: 582 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA----MKEEMYM--DVYGFGEIILEILT 635
+ +FG + K +S F+ A M+ + Y+ DV+ FG + E+LT
Sbjct: 154 KIGDFGLTKAIETDKEXXTVKDD-RDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 212
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 42 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 101
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 102 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 158
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 159 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 215
Query: 635 T 635
T
Sbjct: 216 T 216
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLG-----FCYNRHQAYLLYDYLPNGN 527
V+VK + + I + I R+ + H N+ R + R + L+ +Y PNG+
Sbjct: 39 VAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGS 98
Query: 528 LSEKIR-TKRDWAAKYKIVLGVARGLCFLHH-----DCY-PAIPHGDLKASNIVFDENME 580
L + + DW + ++ V RGL +LH D Y PAI H DL + N++ +
Sbjct: 99 LXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGT 158
Query: 581 PHLAEFGF 588
+++FG
Sbjct: 159 CVISDFGL 166
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 114/251 (45%), Gaps = 33/251 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I+V++K ++ G T K +F+ +G H N+IRL G ++ + + NG+
Sbjct: 74 ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGS 132
Query: 528 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L +R K D A++ ++ G+A G+ +L H DL A NI+ + N+
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSD---MGAVHRDLAARNILINSNLVC 186
Query: 582 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++FG + L + ++ + I WT S E K DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 694
G + N+ + + E Y + ++L +L+LD C + ++RP
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 695 MEEALKLLSGL 705
E+ + +L L
Sbjct: 297 FEQIVSILDKL 307
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 38 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 97
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 98 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 154
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 155 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 211
Query: 635 T 635
T
Sbjct: 212 T 212
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 41 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 100
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 101 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 157
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 158 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 214
Query: 635 T 635
T
Sbjct: 215 T 215
>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3MTF|B Chain B, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3OOM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00507
pdb|3Q4U|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|B Chain B, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|C Chain C, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|D Chain D, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
Length = 301
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 36/181 (19%)
Query: 498 VRHKNLIRLLGFC----YNRH---QAYLLYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVA 549
+RH+N+ LGF +RH Q +L+ Y G+L + ++ T D + +IVL +A
Sbjct: 59 LRHENI---LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIA 115
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGFKYL-----TQLADGS- 598
GL LH + + PAI H DLK+ NI+ +N + +A+ G + QL G+
Sbjct: 116 SGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNN 175
Query: 599 ---------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK 649
P + T + +++ K +D++ FG ++ E+ R+ + G K
Sbjct: 176 PRVGTKRYMAPEVLDETIQVDCFDSYKR---VDIWAFGLVLWEVAR--RMVSNGIVEDYK 230
Query: 650 P 650
P
Sbjct: 231 P 231
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 38 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 97
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 98 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 154
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 155 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 211
Query: 635 T 635
T
Sbjct: 212 T 212
>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00135
Length = 301
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 36/181 (19%)
Query: 498 VRHKNLIRLLGFC----YNRH---QAYLLYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVA 549
+RH+N+ LGF +RH Q +L+ Y G+L + ++ T D + +IVL +A
Sbjct: 59 LRHENI---LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIA 115
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGFKYL-----TQLADGS- 598
GL LH + + PAI H DLK+ NI+ +N + +A+ G + QL G+
Sbjct: 116 SGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNN 175
Query: 599 ---------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK 649
P + T + +++ K +D++ FG ++ E+ R+ + G K
Sbjct: 176 PRVGTKRYMAPEVLDETIQVDCFDSYKR---VDIWAFGLVLWEVAR--RMVSNGIVEDYK 230
Query: 650 P 650
P
Sbjct: 231 P 231
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 69 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 128
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 129 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 185
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 186 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 242
Query: 635 T 635
T
Sbjct: 243 T 243
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 56 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 115
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 116 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 172
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 173 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 229
Query: 635 T 635
T
Sbjct: 230 T 230
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 56 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 115
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 116 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 172
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 173 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 229
Query: 635 T 635
T
Sbjct: 230 T 230
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 36 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 95
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 96 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 152
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 153 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 209
Query: 635 T 635
T
Sbjct: 210 T 210
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 43 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 102
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 103 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 159
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 160 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 216
Query: 635 T 635
T
Sbjct: 217 T 217
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 44 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 103
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 104 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 160
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 161 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 217
Query: 635 T 635
T
Sbjct: 218 T 218
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 37 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 96
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 97 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 153
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 154 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 210
Query: 635 T 635
T
Sbjct: 211 T 211
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 45 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 104
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 105 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 161
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 162 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 218
Query: 635 T 635
T
Sbjct: 219 T 219
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 500 HKNLIRLLGFCYN----RHQAYLLYDYLPNGNL---SEKIRTKRDWAAKYKIV---LGVA 549
H N++RL+ +C +H+A+LL + G L E+++ K ++ + +I+ LG+
Sbjct: 85 HPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGIC 144
Query: 550 RGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
RGL +H Y H DLK +NI+ + +P L + G
Sbjct: 145 RGLEAIHAKGYA---HRDLKPTNILLGDEGQPVLMDLG 179
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ ++LP
Sbjct: 41 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPY 100
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L E ++ ++ K++ + +G+ +L Y H DL NI+ +
Sbjct: 101 GSLREYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 157
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 158 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 214
Query: 635 T 635
T
Sbjct: 215 T 215
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKI------VLGVARGLC 553
H N++RL+G C + Y++ + + G+ +RT+ A+ ++ V A G+
Sbjct: 171 HPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE---GARLRVKTLLQMVGDAAAGME 227
Query: 554 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK-------IAWT 606
+L C H DL A N + E +++FG + ADG + A + WT
Sbjct: 228 YLESKC---CIHRDLAARNCLVTEKNVLKISDFGMS--REEADGVYAASGGLRQVPVKWT 282
Query: 607 ESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+ E N + DV+ FG ++ E + G
Sbjct: 283 -APEALNYGRYSSESDVWSFGILLWETFSLG 312
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 498 VRHKNLIRLLGFCYNRHQA-----YLLYDYLPNGNLSEKIRTKR-DWAAKYKIVLGVARG 551
++H+N+++ +G R + +L+ + G+LS+ ++ W I +ARG
Sbjct: 75 MKHENILQFIG-AEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARG 133
Query: 552 LCFLHHDC-------YPAIPHGDLKASNIVFDENMEPHLAEFG--FKYLTQLADGSFPAK 602
L +LH D PAI H D+K+ N++ N+ +A+FG K+ + G +
Sbjct: 134 LAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQ 193
Query: 603 IAWTE-------SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLL 655
+ G + +D+Y G ++ E+ + R T A + P+D +
Sbjct: 194 VGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS--RCTAA-----DGPVDEYM 246
Query: 656 GEMYNENEVGSSSSLQDEIKLVL 678
+ E E+G SL+D ++V+
Sbjct: 247 --LPFEEEIGQHPSLEDMQEVVV 267
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 88 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 147
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 588
++ L VA+G+ +L H DL A N + DE +A+FG
Sbjct: 148 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 204
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+Y + + W + E K DV+ FG ++ E++T G
Sbjct: 205 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 252
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR----------------HKNLIRLLGFCYNR 513
G+ + I+ RI+ + ++RI ++ H N++ L+G
Sbjct: 35 GVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPP 94
Query: 514 HQ-AYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLG--VARGLCFLHHDCYPAIPHGDLK 569
++L Y+ +G+L + IR+ +R+ K I G VARG+ +L + H DL
Sbjct: 95 EGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFV---HRDLA 151
Query: 570 ASNIVFDENMEPHLAEFG---------FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 620
A N + DE+ +A+FG + + Q P K ES + Y +
Sbjct: 152 ARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKS-- 209
Query: 621 MDVYGFGEIILEILTNG 637
DV+ FG ++ E+LT G
Sbjct: 210 -DVWSFGVLLWELLTRG 225
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 103/272 (37%), Gaps = 51/272 (18%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 528
T + V + K E A + + N+++LLG C LL++Y+ G+L
Sbjct: 78 TMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDL 137
Query: 529 SEKIRTKR--------------------------DWAAKYKIVLGVARGLCFLHHDCYPA 562
+E +R+ A + I VA G+ +L
Sbjct: 138 NEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---K 194
Query: 563 IPHGDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGE-FYNAMK 616
H DL N + ENM +A+FG + ADG+ I W FYN
Sbjct: 195 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYT 254
Query: 617 EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE--MYNENEVGSSSSLQDEI 674
E DV+ +G ++ EI + G +P G+ E +Y + G+ + +
Sbjct: 255 TE--SDVWAYGVVLWEIFSYGL----------QPYYGMAHEEVIYYVRD-GNILACPENC 301
Query: 675 KLVL-DVALLCTRSTPSDRPSMEEALKLLSGL 705
L L ++ LC P+DRPS ++L +
Sbjct: 302 PLELYNLMRLCWSKLPADRPSFCSIHRILQRM 333
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 89 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 148
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 588
++ L VA+G+ +L H DL A N + DE +A+FG
Sbjct: 149 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 205
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+Y + + W + E K DV+ FG ++ E++T G
Sbjct: 206 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 253
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 20/181 (11%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 41 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 100
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K++ + +G+ +L Y H DL NI+ +
Sbjct: 101 GSLRDYLQAHAERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 157
Query: 583 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+ +FG K L Q + G P I W + E K + DV+ FG ++ E+
Sbjct: 158 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 214
Query: 635 T 635
T
Sbjct: 215 T 215
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 70 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 129
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 588
++ L VA+G+ +L H DL A N + DE +A+FG
Sbjct: 130 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+Y + + W + E K DV+ FG ++ E++T G
Sbjct: 187 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 234
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 62 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 121
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 588
++ L VA+G+ +L + H DL A N + DE +A+FG
Sbjct: 122 PTVKDLIGFGLQVAKGMKYLASKKFV---HRDLAARNCMLDEKFTVKVADFGLARDMYDK 178
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+Y + + W + E K DV+ FG ++ E++T G
Sbjct: 179 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 226
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E NAM +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 198 SLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG---NIPWQLGNMSEVQYLDIAG 254
++ +L L GN L+D + L L +T++ + N Q + +L N+ E+ ++
Sbjct: 64 NVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 255 ANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES-F 313
+L + +L+NLT L+L+ NQL F ++T L LDL +N+L +PE F
Sbjct: 122 QSLPDGVFDKLTNLT---YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVF 177
Query: 314 ADLKNLRLLSLMYNEMSGTVPESLV-QLPSLEILFIWNN 351
L L+ LSL N++ +VP+ + +L SL +++ NN
Sbjct: 178 DKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 8/205 (3%)
Query: 100 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLD-ISRNNFSGHFPGGIQSLRNLLVLDAFS 158
F E + NL S + N S+D I NN GIQ L N+ L
Sbjct: 18 FAETIKANLKKKSVTDAVTQNELN-----SIDQIIANNSDIKSVQGIQYLPNVRYLALGG 72
Query: 159 NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 218
N + + +L +L L L G+ F +L+ L L N L
Sbjct: 73 NKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD 130
Query: 219 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 278
L +T++ + +N Q ++ + LD+ L LT+L+ L L
Sbjct: 131 KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 279 NQLAGQVPWEFSRVTTLKSLDLSDN 303
NQL F R+T+L + L +N
Sbjct: 191 NQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 10/173 (5%)
Query: 471 ITVSVKKI-EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY--LLYDYLPNGN 527
I V V K+ +W + + +E R+ H N++ +LG C + + L+ + P G+
Sbjct: 36 IVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWXPYGS 95
Query: 528 ----LSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
L E D + K L ARG FL H P IP L + ++ DE+ +
Sbjct: 96 LYNVLHEGTNFVVDQSQAVKFALDXARGXAFL-HTLEPLIPRHALNSRSVXIDEDXTARI 154
Query: 584 AEFGFKYLTQLADGSF-PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+ K+ Q + PA +A E+ + D + F ++ E++T
Sbjct: 155 SXADVKFSFQSPGRXYAPAWVA-PEALQKKPEDTNRRSADXWSFAVLLWELVT 206
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 68 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 127
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 588
++ L VA+G+ +L H DL A N + DE +A+FG
Sbjct: 128 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 184
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+Y + + W + E K DV+ FG ++ E++T G
Sbjct: 185 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 232
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 67 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 126
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 588
++ L VA+G+ +L H DL A N + DE +A+FG
Sbjct: 127 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 183
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+Y + + W + E K DV+ FG ++ E++T G
Sbjct: 184 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 231
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 22/151 (14%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKI------VLGVARGLC 553
H N++RL+G C + Y++ + + G+ +RT+ A+ ++ V A G+
Sbjct: 171 HPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE---GARLRVKTLLQMVGDAAAGME 227
Query: 554 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK-------IAWT 606
+L C H DL A N + E +++FG + ADG A + WT
Sbjct: 228 YLESKC---CIHRDLAARNCLVTEKNVLKISDFGMS--REEADGVXAASGGLRQVPVKWT 282
Query: 607 ESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+ E N + DV+ FG ++ E + G
Sbjct: 283 -APEALNYGRYSSESDVWSFGILLWETFSLG 312
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 69 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 128
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 588
++ L VA+G+ +L H DL A N + DE +A+FG
Sbjct: 129 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 185
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+Y + + W + E K DV+ FG ++ E++T G
Sbjct: 186 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 233
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 70 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 129
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 588
++ L VA+G+ +L H DL A N + DE +A+FG
Sbjct: 130 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+Y + + W + E K DV+ FG ++ E++T G
Sbjct: 187 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 234
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 469 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VKK++ ++ I + +++H N+++ G CY+ R L+ +YLP
Sbjct: 39 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 98
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ ++ K++ + +G+ +L Y H +L NI+ +
Sbjct: 99 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRNLATRNILVENENRVK 155
Query: 583 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+ +FG + + K I W + E K + DV+ FG ++ E+ T
Sbjct: 156 IGDFGLTKVLPQDKEYYKVKEPGESPIFWY-APESLTESKFSVASDVWSFGVVLYELFT 213
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 69 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 128
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY----- 590
++ L VA+G+ +L H DL A N + DE +A+FG
Sbjct: 129 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 185
Query: 591 ----LTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+ P K ES K DV+ FG ++ E++T G
Sbjct: 186 EXXSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 233
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 483 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 538
T I VS+F+T + H N++ LLG C + L+ Y+ +G+L IR +
Sbjct: 65 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 124
Query: 539 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 588
++ L VA+G+ +L H DL A N + DE +A+FG
Sbjct: 125 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 181
Query: 589 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+Y + + W + E K DV+ FG ++ E++T G
Sbjct: 182 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 229
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I V++K ++ G T K +F++ +G H N+I L G ++ +Y+ NG+
Sbjct: 43 ICVAIKTLKAGYTD-KQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGS 101
Query: 528 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L +R ++V G+ G+ +L Y H DL A NI+ + N+ ++
Sbjct: 102 LDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSY---VHRDLAARNILVNSNLVCKVS 158
Query: 585 EFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+FG + L + ++ + I WT + E K DV+ +G ++ E+++ G
Sbjct: 159 DFGMSRVLEDDPEAAYTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYG 216
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 250 LDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI 309
+D +G +L+ S+P + T++ L+L+ NQ+ P F R+T L LDL +N+L+
Sbjct: 22 VDCSGKSLA-SVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 310 PESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
F L L LSL N++ + L SL +++ NN
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I V++K ++ G T K +F++ +G H N+I L G ++ +Y+ NG+
Sbjct: 37 ICVAIKTLKAGYTD-KQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGS 95
Query: 528 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L +R ++V G+ G+ +L Y H DL A NI+ + N+ ++
Sbjct: 96 LDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSY---VHRDLAARNILVNSNLVCKVS 152
Query: 585 EFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+FG + L + ++ + I WT + E K DV+ +G ++ E+++ G
Sbjct: 153 DFGMSRVLEDDPEAAYTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYG 210
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 250 LDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI 309
+D +G +L+ S+P + T++ L+L+ NQ+ P F R+T L LDL +N+L+
Sbjct: 14 VDCSGKSLA-SVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 310 PESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
F L L LSL N++ + L SL +++ NN
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I V++K ++ G T K +F++ +G H N+I L G ++ +++ NG+
Sbjct: 62 IFVAIKTLKSGYTE-KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGS 120
Query: 528 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L +R ++V G+A G+ +L Y H DL A NI+ + N+ ++
Sbjct: 121 LDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNY---VHRDLAARNILVNSNLVCKVS 177
Query: 585 EFGFKYLTQLADGSFPA---------KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+FG + D S P I WT + E K DV+ +G ++ E+++
Sbjct: 178 DFGLSRFLE-DDTSDPTYTSALGGKIPIRWT-APEAIQYRKFTSASDVWSYGIVMWEVMS 235
Query: 636 NG 637
G
Sbjct: 236 YG 237
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + ++++ +K D + +A L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYC 129
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 130 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 159
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + ++++ +K D + +A L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYC 129
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 130 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 159
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 29/200 (14%)
Query: 469 TGITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFC------YNRHQA-- 516
TG V++KK+ E I + E I + ++H+N++ L+ C YNR +A
Sbjct: 42 TGQKVALKKVLMENEKEGFPITALRE-IKILQLLKHENVVNLIEICRTKASPYNRCKASI 100
Query: 517 YLLYDYLPN--GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 574
YL++D+ + L + K + +++ + GL ++H + I H D+KA+N++
Sbjct: 101 YLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVL 157
Query: 575 FDENMEPHLAEFGFKYLTQLADGSFPAKIA------WTESGEFYNAMKEEMY---MDVYG 625
+ LA+FG LA S P + W E + E Y +D++G
Sbjct: 158 ITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVTLWYRPPELL--LGERDYGPPIDLWG 215
Query: 626 FGEIILEILTNGRLTNAGSS 645
G I+ E+ T + +
Sbjct: 216 AGCIMAEMWTRSPIMQGNTE 235
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 109/245 (44%), Gaps = 20/245 (8%)
Query: 103 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHF-PGGIQSLRNLLVLDAFSNSF 161
L L LS N F + N SL L I N G +++L NL LD +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 162 --SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFK---SLEFLHLAGNLL---NDQI 213
S ++ L HL+ LNL+ ++ P+ + +FK LE L LA L + Q
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLS---YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 214 PAE-LGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL-SGSIPK--ELSNLT 269
P + L +LK + + ++ + + +Q+L++ G + G+I K L L
Sbjct: 420 PFQNLHLLKV---LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
+LE L L L+ F+ + + +DLS NRL+ E+ + LK + L+L N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535
Query: 330 SGTVP 334
S +P
Sbjct: 536 SIILP 540
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 37/259 (14%)
Query: 100 FNELVDLNLSHNSFSG--QFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAF 157
F ++ D ++S F G + VE NL +IS N F H G+Q L
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQELD-------L 285
Query: 158 SNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAEL 217
+ + +P+ + L LK L L+ + F +F SL L + GN
Sbjct: 286 TATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN---------- 335
Query: 218 GMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL--SGSIPKELSNLTKLESLF 275
+E+G L N+ ++ LD++ ++ S +L NL+ L+SL
Sbjct: 336 -----TKRLELGTGC--------LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382
Query: 276 LFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES-FADLKNLRLLSLMYNEMSGTVP 334
L N+ F L+ LDL+ RL +S F +L L++L+L ++ + +
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442
Query: 335 ESLVQLPSLEILFIWNNYF 353
+ LP+L+ L + N+F
Sbjct: 443 QLFDGLPALQHLNLQGNHF 461
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 97/248 (39%), Gaps = 53/248 (21%)
Query: 128 ISLDISRNNFSGHFPGGI-----QSL-----RNLLVL-DAFSNSFSGSV----------- 165
+SL+++ N+ +G PG QSL +NLLV+ NS S+
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241
Query: 166 ---PAEISQLEHLKV--LNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 220
PA L + V +NL YF + F F L+ L L L+ ++P+ L L
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300
Query: 221 KTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 280
T+ + + N ++ N + +L I G N +LE
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKG------------NTKRLE-------- 340
Query: 281 LAGQVPWEFSRVTTLKSLDLS--DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 338
G E + L+ LDLS D S +L +L+ L+L YNE E+
Sbjct: 341 -LGTGCLE--NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 339 QLPSLEIL 346
+ P LE+L
Sbjct: 398 ECPQLELL 405
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 12/158 (7%)
Query: 491 FITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--------Y 542
+ R+ H N++RL+ C + L ++ + +RT D A
Sbjct: 56 LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIK 115
Query: 543 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK 602
++ RGL FLH +C I H DLK NI+ LA+FG + FP
Sbjct: 116 DLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALFPVV 172
Query: 603 IA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ W + E +D++ G I E+ L
Sbjct: 173 VTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 210
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ ++ D + +A L +
Sbjct: 69 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYC 128
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ N E +A+FG+
Sbjct: 129 HSK---RVIHRDIKPENLLLGSNGELKIADFGW 158
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ ++ D + +A L +
Sbjct: 69 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYC 128
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ N E +A+FG+
Sbjct: 129 HSK---RVIHRDIKPENLLLGSNGELKIADFGW 158
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 241 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 300
L ++ + YL + G L LT L+ L L NQL F ++T L L+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 301 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV-QLPSLEILFIWNNYFSGSLPE 359
+ N+L F L NL L L YN++ ++PE + +L L+ L ++ N S+P+
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPD 198
Query: 360 NL-GRNSKLRWVDVSTNNFNGSIP 382
+ R + L+++ + N ++ + P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 92/238 (38%), Gaps = 15/238 (6%)
Query: 100 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLD-ISRNNFSGHFPGGIQSLRNLLVLDAFS 158
F E + NL S + + L S+D I NN GIQ L N+ L
Sbjct: 18 FAETIKANLKKKSVT-----DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGG 72
Query: 159 NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 218
N + + +L +L L L G+ F +L+ L L N L
Sbjct: 73 NKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD 130
Query: 219 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 278
L +T++ + +N Q ++ + LD++ L LT+L+ L L++
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 279 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPES 336
NQL F R+T+L+ + L DN P +R LS N+ SG V S
Sbjct: 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 38 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 96
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 97 HHLHIIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDF 153
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G + GS I W E + DVY FG ++ E++T
Sbjct: 154 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 209
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 38 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 96
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 97 HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 153
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G + GS I W E + DVY FG ++ E++T
Sbjct: 154 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 209
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 29/202 (14%)
Query: 467 LPTGITVSVK---KIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY 520
+P G TV + KI T K EF+ + ++ H +L+RLLG C + L+
Sbjct: 37 VPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS-PTIQLVT 95
Query: 521 DYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+P+G L E + +D ++ + +A+G+ +L + H DL A N++
Sbjct: 96 QLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKS 152
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILE 632
+ +FG L + + + A I W + E + K DV+ +G I E
Sbjct: 153 PNHVKITDFGLARLLEGDEKEYNADGGKMPIKWM-ALECIHYRKFTHQSDVWSYGVTIWE 211
Query: 633 ILTNGRLTNAGSSLQNKPIDGL 654
++T G KP DG+
Sbjct: 212 LMTFG----------GKPYDGI 223
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 33 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 91
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 92 HHLHIIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDF 148
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G + GS I W E + DVY FG ++ E++T
Sbjct: 149 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 35 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 93
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 94 HHLHIIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDF 150
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G + GS I W E + DVY FG ++ E++T
Sbjct: 151 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 206
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 23/246 (9%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I V++K ++ G T K +F++ +G H N+I L G ++ +Y+ NG+
Sbjct: 58 ICVAIKTLKAGYTD-KQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGS 116
Query: 528 LSEKIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
L +R K D ++G+ RG+ + + + H DL A NI+ + N+ +++F
Sbjct: 117 LDAFLR-KNDGRFTVIQLVGMLRGIGSGMKYLSDMSAVHRDLAARNILVNSNLVCKVSDF 175
Query: 587 GF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLT 640
G + L + ++ + I WT + E K DV+ +G ++ E+++ G
Sbjct: 176 GMSRVLEDDPEAAYTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGE-- 232
Query: 641 NAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 699
+ N+ + + E Y + +L +L+LD C + SDRP + +
Sbjct: 233 RPYWDMSNQDVIKAIEEGYRLPPPMDCPIALH---QLMLD----CWQKERSDRPKFGQIV 285
Query: 700 KLLSGL 705
+L L
Sbjct: 286 NMLDKL 291
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 29/202 (14%)
Query: 467 LPTGITVSVK---KIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY 520
+P G TV + KI T K EF+ + ++ H +L+RLLG C + L+
Sbjct: 60 VPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS-PTIQLVT 118
Query: 521 DYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+P+G L E + +D ++ + +A+G+ +L + H DL A N++
Sbjct: 119 QLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKS 175
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILE 632
+ +FG L + + + A I W + E + K DV+ +G I E
Sbjct: 176 PNHVKITDFGLARLLEGDEKEYNADGGKMPIKWM-ALECIHYRKFTHQSDVWSYGVTIWE 234
Query: 633 ILTNGRLTNAGSSLQNKPIDGL 654
++T G KP DG+
Sbjct: 235 LMTFG----------GKPYDGI 246
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR----------HKNLIRLLGFCYNRHQAYL 518
TG +VK +E A R+ R T R H ++I L+ + +L
Sbjct: 118 TGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFL 177
Query: 519 LYDYLPNGNLSEKIRTKRDWAAK--YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
++D + G L + + K + K I+ + + FLH + I H DLK NI+ D
Sbjct: 178 VFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLD 234
Query: 577 ENMEPHLAEFGF 588
+NM+ L++FGF
Sbjct: 235 DNMQIRLSDFGF 246
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V+VK K + T ++ + + + + H N+++L YL+ +Y
Sbjct: 39 TGREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASG 98
Query: 526 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + R K A AK++ ++ + C H Y I H DLKA N++ D +M
Sbjct: 99 GEVFDYLVAHGRMKEKEARAKFRQIVSAVQ-YC---HQKY--IVHRDLKAENLLLDGDMN 152
Query: 581 PHLAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+A+FGF + + GS P G+ Y+ + +DV+ G +IL L
Sbjct: 153 IKIADFGFSNEFTVGNKLDTFCGSPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 207
Query: 635 TNGRLTNAGSSLQ 647
+G L G +L+
Sbjct: 208 VSGSLPFDGQNLK 220
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 486 KIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-----RTKRDWAA 540
+ V + I + +RH L+ L + ++ ++Y+++ G L EK+ + D A
Sbjct: 199 ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAV 258
Query: 541 KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENMEPHLAEFGFKYLTQLADGS 598
+Y + V +GLC +H + Y H DLK NI+F + E L +FG LT D
Sbjct: 259 EY--MRQVCKGLCHMHENNY---VHLDLKPENIMFTTKRSNELKLIDFG---LTAHLDPK 310
Query: 599 FPAKIAWTESGEF 611
K+ T + EF
Sbjct: 311 QSVKVT-TGTAEF 322
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 61 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 119
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 120 HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 176
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G + GS I W E + DVY FG ++ E++T
Sbjct: 177 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 232
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 486 KIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-----RTKRDWAA 540
+ V + I + +RH L+ L + ++ ++Y+++ G L EK+ + D A
Sbjct: 93 ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAV 152
Query: 541 KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENMEPHLAEFGFKYLTQLADGS 598
+Y + V +GLC +H + Y H DLK NI+F + E L +FG LT D
Sbjct: 153 EY--MRQVCKGLCHMHENNY---VHLDLKPENIMFTTKRSNELKLIDFG---LTAHLDPK 204
Query: 599 FPAKIAWTESGEF 611
K+ T + EF
Sbjct: 205 QSVKVT-TGTAEF 216
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 60 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 118
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 119 HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 175
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G + GS I W E + DVY FG ++ E++T
Sbjct: 176 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 231
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 469 TGITVSVKKI---EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KK E KI I + ++H NL+ LL + + +L+++Y +
Sbjct: 27 TGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDH 86
Query: 526 GNLSEKIRTKRDWAAKY--KIVLGVARGLCFLH-HDCYPAIPHGDLKASNIVFDENMEPH 582
L E R +R I + + F H H+C H D+K NI+ ++
Sbjct: 87 TVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCI----HRDVKPENILITKHSVIK 142
Query: 583 LAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMKEEMY---MDVYGFGEIILEILT 635
L +FGF L + ++A W S E + + Y +DV+ G + E+L+
Sbjct: 143 LCDFGFARLLTGPSDYYDDEVATRWYRSPEL--LVGDTQYGPPVDVWAIGCVFAELLS 198
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 37 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 95
Query: 530 EKI---RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
+ TK + I ARG+ +LH +I H DLK++NI E+ + +F
Sbjct: 96 HHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDF 152
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G + GS I W E ++ DVY FG ++ E++T
Sbjct: 153 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 208
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V+VK K + ++ ++ + + + + H N+++L YL+ +Y
Sbjct: 38 TGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASG 97
Query: 526 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + R K A AK++ ++ + + H I H DLKA N++ D +M
Sbjct: 98 GEVFDYLVAHGRMKEKEARAKFRQIVSAVQ---YCHQKF---IVHRDLKAENLLLDADMN 151
Query: 581 PHLAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+A+FGF + GS P G+ Y+ + +DV+ G +IL L
Sbjct: 152 IKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 206
Query: 635 TNGRLTNAGSSLQ 647
+G L G +L+
Sbjct: 207 VSGSLPFDGQNLK 219
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 91 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 150
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 151 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 180
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V+VK K + ++ ++ + + + + H N+++L YL+ +Y
Sbjct: 38 TGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASG 97
Query: 526 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + R K A AK++ ++ + + H I H DLKA N++ D +M
Sbjct: 98 GEVFDYLVAHGRMKEKEARAKFRQIVSAVQ---YCHQKF---IVHRDLKAENLLLDADMN 151
Query: 581 PHLAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+A+FGF + GS P G+ Y+ + +DV+ G +IL L
Sbjct: 152 IKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 206
Query: 635 TNGRLTNAGSSLQ 647
+G L G +L+
Sbjct: 207 VSGSLPFDGQNLK 219
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGXVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 30 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 86
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++T D +A I L + + GL F H + H DLK N++ +
Sbjct: 87 --LHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 141
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 142 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 201
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 202 TRRALFPGDSEIDQ 215
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 69 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 128
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 129 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 158
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 66 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 126 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 155
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 95/247 (38%), Gaps = 46/247 (18%)
Query: 491 FITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR---TKRDWAAKYKI 544
F+ + +R H N+++ +G Y + + +Y+ G L I+ ++ W+ +
Sbjct: 54 FLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSF 113
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA--- 601
+A G+ +LH I H DL + N + EN +A+FG L + + + P
Sbjct: 114 AKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARL-MVDEKTQPEGLR 169
Query: 602 -------KIAWTESG-------EFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 647
K +T G E N + +DV+ FG ++ EI+ GR+ NA
Sbjct: 170 SLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEII--GRV-NADPDYL 226
Query: 648 NKPID------GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL 701
+ +D G L N S + + C P RPS +
Sbjct: 227 PRTMDFGLNVRGFLDRYCPPNCPPS----------FFPITVRCCDLDPEKRPSFVKLEHW 276
Query: 702 LSGLKPH 708
L L+ H
Sbjct: 277 LETLRMH 283
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 65 LRHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 125 HSK---KVIHRDIKPENLLLGSAGELKIADFGW 154
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 128 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 157
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 130 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 159
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 125 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 154
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 82 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 141
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 142 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 171
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 128 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 157
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 469 TGITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFC------YNRHQA-- 516
TG V++KK+ E I + E I + ++H+N++ L+ C YNR +
Sbjct: 42 TGQKVALKKVLMENEKEGFPITALRE-IKILQLLKHENVVNLIEICRTKASPYNRCKGSI 100
Query: 517 YLLYDYLPN--GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 574
YL++D+ + L + K + +++ + GL ++H + I H D+KA+N++
Sbjct: 101 YLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVL 157
Query: 575 FDENMEPHLAEFGFKYLTQLADGSFPAKIA------WTESGEFYNAMKEEMY---MDVYG 625
+ LA+FG LA S P + W E + E Y +D++G
Sbjct: 158 ITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVTLWYRPPELL--LGERDYGPPIDLWG 215
Query: 626 FGEIILEILTNGRLTNAGSS 645
G I+ E+ T + +
Sbjct: 216 AGCIMAEMWTRSPIMQGNTE 235
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 29/191 (15%)
Query: 469 TGITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFC------YNRHQA-- 516
TG V++KK+ E I + E I + ++H+N++ L+ C YNR +
Sbjct: 42 TGQKVALKKVLMENEKEGFPITALRE-IKILQLLKHENVVNLIEICRTKASPYNRCKGSI 100
Query: 517 YLLYDYLPN--GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 574
YL++D+ + L + K + +++ + GL ++H + I H D+KA+N++
Sbjct: 101 YLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVL 157
Query: 575 FDENMEPHLAEFGFKYLTQLADGSFPAKIA------WTESGEFYNAMKEEMY---MDVYG 625
+ LA+FG LA S P + W E + E Y +D++G
Sbjct: 158 ITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVTLWYRPPELL--LGERDYGPPIDLWG 215
Query: 626 FGEIILEILTN 636
G I+ E+ T
Sbjct: 216 AGCIMAEMWTR 226
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 91 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 150
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 151 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 180
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 125 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 154
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 250 LDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI 309
+D +G +L+ S+P + T++ L+L+ N++ P F R+T L LDL +N+L+
Sbjct: 14 VDCSGKSLA-SVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 310 PESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
F L L LSL N++ + L SL +++ NN
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 467 LPTGITVSVKKIE--WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
L G +VK IE G +R ++ E T +KN++ L+ F + + YL+++ L
Sbjct: 35 LQNGKEYAVKIIEKQAGHSRSRVFREVETLYQCQGNKNILELIEFFEDDTRFYLVFEKLQ 94
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
G++ I+ ++ + + ++V VA L FLH I H DLK NI+ +
Sbjct: 95 GGSILAHIQKQKHFNEREASRVVRDVAAALDFLH---TKGIAHRDLKPENILCE 145
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 51 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 110
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 111 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 165
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 166 DXELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 222
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 223 T-GRTLFPGTD 232
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 51 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 110
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 111 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 165
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 166 DXELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 222
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 223 T-GRTLFPGTD 232
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 66 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 126 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 155
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 469 TGITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFC------YNRHQA-- 516
TG V++KK+ E I + E I + ++H+N++ L+ C YNR +
Sbjct: 41 TGQKVALKKVLMENEKEGFPITALRE-IKILQLLKHENVVNLIEICRTKASPYNRCKGSI 99
Query: 517 YLLYDYLPN--GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 574
YL++D+ + L + K + +++ + GL ++H + I H D+KA+N++
Sbjct: 100 YLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVL 156
Query: 575 FDENMEPHLAEFGFKYLTQLADGSFPAKIA------WTESGEFYNAMKEEMY---MDVYG 625
+ LA+FG LA S P + W E + E Y +D++G
Sbjct: 157 ITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVTLWYRPPELL--LGERDYGPPIDLWG 214
Query: 626 FGEIILEILTNGRLTNAGSS 645
G I+ E+ T + +
Sbjct: 215 AGCIMAEMWTRSPIMQGNTE 234
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 66 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 126 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 155
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKXQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DXELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 128 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 157
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 67 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 126
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 127 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 156
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 125 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 154
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 128 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 157
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V+VK K + ++ ++ + + + + H N+++L YL+ +Y
Sbjct: 31 TGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASG 90
Query: 526 GNLSEKI-----RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + +++ AK++ ++ + + H I H DLKA N++ D +M
Sbjct: 91 GEVFDYLVAHGWMKEKEARAKFRQIVSAVQ---YCHQKF---IVHRDLKAENLLLDADMN 144
Query: 581 PHLAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+A+FGF + GS P G+ Y+ + +DV+ G +IL L
Sbjct: 145 IKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 199
Query: 635 TNGRLTNAGSSLQ 647
+G L G +L+
Sbjct: 200 VSGSLPFDGQNLK 212
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 125 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 154
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 64 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 123
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 124 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 153
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ +++++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKSQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DSELKILDFG---LCRHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 89/193 (46%), Gaps = 25/193 (12%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V+V+ K + ++ ++ + + + + H N+++L YL+ +Y
Sbjct: 38 TGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASG 97
Query: 526 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + R K A AK++ ++ + + H I H DLKA N++ D +M
Sbjct: 98 GEVFDYLVAHGRMKEKEARAKFRQIVSAVQ---YCHQKF---IVHRDLKAENLLLDADMN 151
Query: 581 PHLAEFGFK----YLTQLAD--GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+A+FGF + +L + GS P G+ Y+ + +DV+ G +IL L
Sbjct: 152 IKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 206
Query: 635 TNGRLTNAGSSLQ 647
+G L G +L+
Sbjct: 207 VSGSLPFDGQNLK 219
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 125 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 154
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 32/243 (13%)
Query: 472 TVSVKKIEWGATR-----IKIVSEFITRIGTVRHKNLIRLLGFCYNR-HQAYLLYDYLPN 525
V++KK+ + + I+ E + + +RH N I+ G CY R H A+L+ +Y
Sbjct: 81 VVAIKKMSYSGKQSNEKWQDIIKE-VRFLQKLRHPNTIQYRG-CYLREHTAWLVMEYC-L 137
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLH-HDCYPAIPHGDLKASNIVFDENMEP 581
G+ S+ + + + +I G +GL +LH H+ + H D+KA NI+ E
Sbjct: 138 GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN----MIHRDVKAGNILLSEPGLV 193
Query: 582 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGR 638
L +FG + A+ F W + E AM E Y +DV+ G +E
Sbjct: 194 KLGDFGSASIMAPAN-XFVGTPYWM-APEVILAMDEGQYDGKVDVWSLGITCIE------ 245
Query: 639 LTNAGSSLQN-KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
L L N + L NE+ S + + +D C + P DRP+ E
Sbjct: 246 LAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDS---CLQKIPQDRPTSEV 302
Query: 698 ALK 700
LK
Sbjct: 303 LLK 305
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 48 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 107
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 108 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 162
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 163 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 219
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 220 T-GRTLFPGTD 229
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 69 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 128
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 129 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 183
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 184 DCELKILDFG---LARHTDDEMXGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 240
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 241 T-GRTLFPGTD 250
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 57 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 116
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 117 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 171
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 172 DXELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 228
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 229 T-GRTLFPGTD 238
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 130 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 159
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 62 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 121
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 122 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 151
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 53 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 112
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 113 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 167
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 168 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 224
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 225 T-GRTLFPGTD 234
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 130 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 159
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 125 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 154
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 58 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 117
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 118 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 172
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 173 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 229
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 230 T-GRTLFPGTD 239
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 58 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 117
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 118 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 172
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 173 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 229
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 230 T-GRTLFPGTD 239
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 51 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 110
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 111 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 165
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 166 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 222
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 223 T-GRTLFPGTD 232
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 125 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 154
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 128 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 157
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 69 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 128
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 129 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 183
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 184 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 240
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 241 T-GRTLFPGTD 250
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 43 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 102
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 103 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 157
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 158 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 214
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 215 T-GRTLFPGTD 224
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 48 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 107
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 108 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 162
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 163 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 219
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 220 T-GRTLFPGTD 229
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 44 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 103
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 104 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 158
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 159 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 215
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 216 T-GRTLFPGTD 225
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 51 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 110
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 111 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 165
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 166 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 222
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 223 T-GRTLFPGTD 232
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 48 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 107
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 108 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 162
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 163 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 219
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 220 T-GRTLFPGTD 229
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 45 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 104
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 105 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 159
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 160 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 216
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 217 T-GRTLFPGTD 226
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKXQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 57 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 116
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 117 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 171
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 172 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 228
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 229 T-GRTLFPGTD 238
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 42 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 101
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 102 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 156
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 157 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 213
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 214 T-GRTLFPGTD 223
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ Q ++ + +L
Sbjct: 33 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLY 91
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 92 HHLHIIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDF 148
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G + GS I W E + DVY FG ++ E++T
Sbjct: 149 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 58 TGLRVAVKKLSKPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 117
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 118 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 172
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 173 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 229
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 230 T-GRTLFPGTD 239
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 66 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 125
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 126 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 180
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 181 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 237
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 238 T-GRTLFPGTD 247
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 52 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 111
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 112 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 166
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 167 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 223
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 224 T-GRTLFPGTD 233
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 43 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 102
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 103 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 157
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 158 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 214
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 215 T-GRTLFPGTD 224
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V+V+ K + ++ ++ + + + + H N+++L YL+ +Y
Sbjct: 38 TGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASG 97
Query: 526 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + R K A AK++ ++ + + H I H DLKA N++ D +M
Sbjct: 98 GEVFDYLVAHGRMKEKEARAKFRQIVSAVQ---YCHQKF---IVHRDLKAENLLLDADMN 151
Query: 581 PHLAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+A+FGF + GS P G+ Y+ + +DV+ G +IL L
Sbjct: 152 IKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 206
Query: 635 TNGRLTNAGSSLQ 647
+G L G +L+
Sbjct: 207 VSGSLPFDGQNLK 219
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 65 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 124
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 125 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 179
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 180 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 236
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 237 T-GRTLFPGTD 246
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 48 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 107
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 108 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 162
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 163 DSELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 219
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 220 T-GRTLFPGTD 229
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLY 520
+G+ ++VKK+ I K + + ++H+N+I LL L
Sbjct: 75 SGLKIAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPATSLEEFNDVYLV 134
Query: 521 DYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 578
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E+
Sbjct: 135 THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNED 190
Query: 579 MEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILT 635
E + +FG L + D +A W + E N M M +D++ G I+ E+LT
Sbjct: 191 CELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLT 247
Query: 636 NGRLTNAGSSLQNK 649
GR G+ N+
Sbjct: 248 -GRTLFPGTDHINQ 260
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 260 SIPKELSNLTKLESLFLFRNQLAG-QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKN 318
++P+ L + T L L L N L+ + W +R+T L SL LS N L+ E+F + N
Sbjct: 32 NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 319 LRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY 352
LR L L N + L +LE+L ++NN+
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 236 NIPWQLGNMSEVQYLDIAGANLSGSIPK-ELSNLTKLESLFLFRNQLAGQVPWEFSRVTT 294
N+P L + + + LD++ NLS + + LT L SL L N L F V
Sbjct: 32 NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 295 LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY-- 352
L+ LDLS N L F+DL+ L +L L N + + + L+ L++ N
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 353 -FSGSLPENLGRNSKLRWVDVSTN 375
F L ++ + KL +D+S+N
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSN 173
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 33 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 91
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 92 HHLHIIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDF 148
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G GS I W E + DVY FG ++ E++T
Sbjct: 149 GLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V+VK K + ++ ++ + + + + H N+++L YL+ +Y
Sbjct: 38 TGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASG 97
Query: 526 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + R K A AK++ ++ + + H I H DLKA N++ D +M
Sbjct: 98 GEVFDYLVAHGRMKEKEARAKFRQIVSAVQ---YCHQKF---IVHRDLKAENLLLDADMN 151
Query: 581 PHLAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+A+FGF + G+ P G+ Y+ + +DV+ G +IL L
Sbjct: 152 IKIADFGFSNEFTFGNKLDAFCGAPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 206
Query: 635 TNGRLTNAGSSLQ 647
+G L G +L+
Sbjct: 207 VSGSLPFDGQNLK 219
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 52 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 111
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 112 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 166
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 167 DSELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 223
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 224 T-GRTLFPGTD 233
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
+ V++K ++ G T K +F+ +G H N++ L G ++ +++ NG
Sbjct: 72 VAVAIKTLKVGYTE-KQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGA 130
Query: 528 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L +R ++V G+A G+ +L Y H DL A NI+ + N+ ++
Sbjct: 131 LDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYV---HRDLAARNILVNSNLVCKVS 187
Query: 585 EFGFKYLTQ--------LADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 636
+FG + + G P + WT + E K DV+ +G ++ E+++
Sbjct: 188 DFGLSRVIEDDPEAVYTTTGGKIPVR--WT-APEAIQYRKFTSASDVWSYGIVMWEVMSY 244
Query: 637 GRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM 695
G + N+ + + E Y + + L +L+LD C + ++RP
Sbjct: 245 GE--RPYWDMSNQDVIKAIEEGYRLPAPMDCPAGLH---QLMLD----CWQKERAERPKF 295
Query: 696 EEALKLLSGL 705
E+ + +L +
Sbjct: 296 EQIVGILDKM 305
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 32/243 (13%)
Query: 472 TVSVKKIEWGATR-----IKIVSEFITRIGTVRHKNLIRLLGFCYNR-HQAYLLYDYLPN 525
V++KK+ + + I+ E + + +RH N I+ G CY R H A+L+ +Y
Sbjct: 42 VVAIKKMSYSGKQSNEKWQDIIKE-VRFLQKLRHPNTIQYRG-CYLREHTAWLVMEYCL- 98
Query: 526 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLH-HDCYPAIPHGDLKASNIVFDENMEP 581
G+ S+ + + + +I G +GL +LH H+ + H D+KA NI+ E
Sbjct: 99 GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN----MIHRDVKAGNILLSEPGLV 154
Query: 582 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGR 638
L +FG + A+ F W + E AM E Y +DV+ G +E
Sbjct: 155 KLGDFGSASIMAPAN-XFVGTPYWM-APEVILAMDEGQYDGKVDVWSLGITCIE------ 206
Query: 639 LTNAGSSLQN-KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 697
L L N + L NE+ S + + +D C + P DRP+ E
Sbjct: 207 LAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDS---CLQKIPQDRPTSEV 263
Query: 698 ALK 700
LK
Sbjct: 264 LLK 266
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 52 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 111
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 112 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 166
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 167 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 223
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 224 T-GRTLFPGTD 233
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 25/247 (10%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
+ V++K ++ G T K +F+ +G H N+I L G ++ +Y+ NG+
Sbjct: 51 LPVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGS 109
Query: 528 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L ++ ++V G++ G+ +L Y H DL A NI+ + N+ ++
Sbjct: 110 LDTFLKKNDGQFTVIQLVGMLRGISAGMKYLSDMGY---VHRDLAARNILINSNLVCKVS 166
Query: 585 EFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
+FG + L + ++ + I WT + E K DV+ +G ++ E+++ G
Sbjct: 167 DFGLSRVLEDDPEAAYTTRGGKIPIRWT-APEAIAFRKFTSASDVWSYGIVMWEVVSYGE 225
Query: 639 LTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEA 698
+ N+ + + E Y S D + + L C + + RP +E
Sbjct: 226 --RPYWEMTNQDVIKAVEEGYR------LPSPMDCPAALYQLMLDCWQKERNSRPKFDEI 277
Query: 699 LKLLSGL 705
+ +L L
Sbjct: 278 VNMLDKL 284
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 67 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 126
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A FG+
Sbjct: 127 HSK---RVIHRDIKPENLLLGSAGELKIANFGW 156
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 33/188 (17%)
Query: 469 TGITVSVK--KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA--YLLYDYLP 524
TG V+VK K + G + I + T+ H+++I+ G C + A L+ +Y+P
Sbjct: 59 TGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVP 118
Query: 525 NGNLSEKIRTKRDWAAKYKIVLG--------VARGLCFLHHDCYPAIPHGDLKASNIVFD 576
G+L RD+ ++ I L + G+ +LH Y H DL A N++ D
Sbjct: 119 LGSL-------RDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYI---HRDLAARNVLLD 168
Query: 577 ENMEPHLAEFGF--------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGE 628
+ + +FG + DG P + W + E K DV+ FG
Sbjct: 169 NDRLVKIGDFGLAKAVPEGHEXYRVREDGDSP--VFWY-APECLKEYKFYYASDVWSFGV 225
Query: 629 IILEILTN 636
+ E+LT+
Sbjct: 226 TLYELLTH 233
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 9/228 (3%)
Query: 130 LDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPI 189
LD+ N + G ++L+NL L +N S P + L L+ L L+ + +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 190 PSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQ--GNIPWQLGNMSEV 247
P + K+L+ L + N + + L + +E+G N + G M ++
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 248 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 307
Y+ IA N++ +IP+ L L L L N++ + L L LS N +S
Sbjct: 174 SYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 308 PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSG 355
S A+ +LR L L N++ VP L ++++++ NN S
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 284 QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSL 343
+VP + T L LDL +N+++ F +LKNL L L+ N++S P + L L
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 344 EILFIWNNYFSGSLPENLGR 363
E L++ N LPE + +
Sbjct: 103 ERLYLSKNQLK-ELPEKMPK 121
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 53 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 111
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 112 HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 168
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G GS I W E + DVY FG ++ E++T
Sbjct: 169 GLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 224
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 61 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 119
Query: 530 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
I TK + I A+G+ +LH +I H DLK++NI E++ + +F
Sbjct: 120 HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 176
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G GS I W E + DVY FG ++ E++T
Sbjct: 177 GLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 232
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 555
+RH N++RL G+ ++ + YL+ +Y P G + +++ +K D + +A L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A FG+
Sbjct: 128 HSK---RVIHRDIKPENLLLGSAGELKIANFGW 157
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 9/228 (3%)
Query: 130 LDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPI 189
LD+ N + G ++L+NL L +N S P + L L+ L L+ + +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 190 PSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQ--GNIPWQLGNMSEV 247
P + K+L+ L + N + + L + +E+G N + G M ++
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 248 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 307
Y+ IA N++ +IP+ L L L L N++ + L L LS N +S
Sbjct: 174 SYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 308 PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSG 355
S A+ +LR L L N++ VP L ++++++ NN S
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 284 QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSL 343
+VP + T L LDL +N+++ F +LKNL L L+ N++S P + L L
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 344 EILFIWNNYFSGSLPENLGR 363
E L++ N LPE + +
Sbjct: 103 ERLYLSKNQLK-ELPEKMPK 121
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ + Q ++ + +L
Sbjct: 49 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 107
Query: 530 EKI---RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
+ TK + I ARG+ +LH +I H DLK++NI E+ + +F
Sbjct: 108 HHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDF 164
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G GS I W E ++ DVY FG ++ E++T
Sbjct: 165 GLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 220
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 12/158 (7%)
Query: 491 FITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--------Y 542
+ R+ H N++RL+ C + L ++ + +RT D A
Sbjct: 64 LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIK 123
Query: 543 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK 602
++ RGL FLH +C I H DLK NI+ LA+FG + P
Sbjct: 124 DLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVV 180
Query: 603 IA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ W + E +D++ G I E+ L
Sbjct: 181 VTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 218
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Query: 466 VLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
VL I V +K++E ++S V H +IR+ G + Q +++ DY+
Sbjct: 38 VLKKEIVVRLKQVEHTNDERLMLS-------IVTHPFIIRMWGTFQDAQQIFMIMDYIEG 90
Query: 526 GNLSEKIRTKRDW---AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G L +R + + AK+ V L +LH I + DLK NI+ D+N
Sbjct: 91 GELFSLLRKSQRFPNPVAKF-YAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIK 146
Query: 583 LAEFGF-KYLTQLA 595
+ +FGF KY+ +
Sbjct: 147 ITDFGFAKYVPDVT 160
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
I V++K ++ G T K +F++ +G H N+I L G ++ +++ NG+
Sbjct: 36 IFVAIKTLKSGYTE-KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGS 94
Query: 528 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L +R ++V G+A G+ +L Y H L A NI+ + N+ ++
Sbjct: 95 LDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNY---VHRALAARNILVNSNLVCKVS 151
Query: 585 EFGFKYL----------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+FG T G P I WT + E K DV+ +G ++ E++
Sbjct: 152 DFGLSRFLEDDTSDPTYTSALGGKIP--IRWT-APEAIQYRKFTSASDVWSYGIVMWEVM 208
Query: 635 TNG 637
+ G
Sbjct: 209 SYG 211
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 39/212 (18%)
Query: 461 AGCKAVLPTGITVSV-----KKIEWGATRIKIVSEF--ITRIGTVRHKNLIRLLGFCYNR 513
A + TG+++ V K+ + R ++SE +T++G+ H+N++ LLG C
Sbjct: 64 ATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGS--HENIVNLLGACTLS 121
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKI---------------VLGVARGLCFLHHD 558
YL+++Y G+L +R+KR+ ++ +I VL LCF +
Sbjct: 122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQV 181
Query: 559 C-------YPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK------IAW 605
+ + H DL A N++ + +FG ++D ++ + + W
Sbjct: 182 AKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLA-RDIMSDSNYVVRGNARLPVKW 240
Query: 606 TESGEFYNAMKEEMYMDVYGFGEIILEILTNG 637
+ + + DV+ +G ++ EI + G
Sbjct: 241 MAPESLFEGIY-TIKSDVWSYGILLWEIFSLG 271
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 34 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 90
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 91 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 145
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 146 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMV 205
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 206 TRRALFPGDSEIDQ 219
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 26 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEH--- 82
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
+ + ++T D +A I L + + GL F H + H DLK N++ +
Sbjct: 83 --VHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 137
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 138 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 197
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 198 TRRALFPGDSEIDQ 211
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 34 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 90
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 91 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 145
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 146 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 205
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 206 TRRALFPGDSEIDQ 219
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++K K + T ++ + + + + H N+++L YL+ +Y
Sbjct: 36 TGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASG 95
Query: 526 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + R K A +K++ ++ + + H I H DLKA N++ D +M
Sbjct: 96 GEVFDYLVAHGRMKEKEARSKFRQIVSAVQ---YCHQ---KRIVHRDLKAENLLLDADMN 149
Query: 581 PHLAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+A+FGF + GS P G+ Y+ + +DV+ G +IL L
Sbjct: 150 IKIADFGFSNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 204
Query: 635 TNGRLTNAGSSLQN 648
+G L G +L+
Sbjct: 205 VSGSLPFDGQNLKE 218
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 98/264 (37%), Gaps = 43/264 (16%)
Query: 469 TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ A R ++SE H N++ LLG C ++ +Y
Sbjct: 75 AAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCY 134
Query: 526 GNLSEKIRTKRD--------------------WAAKYKIVLGVARGLCFL-HHDCYPAIP 564
G+L +R KRD VA+G+ FL +C
Sbjct: 135 GDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCI---- 190
Query: 565 HGDLKASNIVFDENMEPHLAEFGFKYLTQ-----LADGSFPAKIAWTESGEFYNAMKEEM 619
H DL A NI+ + +FG + + G+ + W +N +
Sbjct: 191 HRDLAARNILLTHGRITKICDFGLARHIKNDSNYVVKGNARLPVKWMAPESIFNCV-YTF 249
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQDEIKLVL 678
DV+ +G + E+ + G S P+D +M E + S E+
Sbjct: 250 ESDVWSYGIFLWELFSLG-----SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEM---Y 301
Query: 679 DVALLCTRSTPSDRPSMEEALKLL 702
D+ C + P RP+ ++ ++L+
Sbjct: 302 DIMKTCWDADPLKRPTFKQIVQLI 325
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + ++G L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDYG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 98/264 (37%), Gaps = 43/264 (16%)
Query: 469 TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ A R ++SE H N++ LLG C ++ +Y
Sbjct: 52 AAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCY 111
Query: 526 GNLSEKIRTKRD--------------------WAAKYKIVLGVARGLCFL-HHDCYPAIP 564
G+L +R KRD VA+G+ FL +C
Sbjct: 112 GDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCI---- 167
Query: 565 HGDLKASNIVFDENMEPHLAEFGFKYLTQ-----LADGSFPAKIAWTESGEFYNAMKEEM 619
H DL A NI+ + +FG + + G+ + W +N +
Sbjct: 168 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCV-YTF 226
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQDEIKLVL 678
DV+ +G + E+ + G S P+D +M E + S E+
Sbjct: 227 ESDVWSYGIFLWELFSLG-----SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEM---Y 278
Query: 679 DVALLCTRSTPSDRPSMEEALKLL 702
D+ C + P RP+ ++ ++L+
Sbjct: 279 DIMKTCWDADPLKRPTFKQIVQLI 302
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 30 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 86
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
LS ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 87 --LSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 141
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 142 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 201
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 202 TRRALFPGDSEIDQ 215
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+ E + +FG T F A W + E N M +D++ G I+ E+LT
Sbjct: 161 DCELKILDFGLARHTDDEMAGFVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT- 218
Query: 637 GRLTNAGSS 645
GR G+
Sbjct: 219 GRTLFPGTD 227
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 98/264 (37%), Gaps = 43/264 (16%)
Query: 469 TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ A R ++SE H N++ LLG C ++ +Y
Sbjct: 68 AAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCY 127
Query: 526 GNLSEKIRTKRD--------------------WAAKYKIVLGVARGLCFL-HHDCYPAIP 564
G+L +R KRD VA+G+ FL +C
Sbjct: 128 GDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCI---- 183
Query: 565 HGDLKASNIVFDENMEPHLAEFGFKYLTQ-----LADGSFPAKIAWTESGEFYNAMKEEM 619
H DL A NI+ + +FG + + G+ + W +N +
Sbjct: 184 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCV-YTF 242
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQDEIKLVL 678
DV+ +G + E+ + G S P+D +M E + S E+
Sbjct: 243 ESDVWSYGIFLWELFSLG-----SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEM---Y 294
Query: 679 DVALLCTRSTPSDRPSMEEALKLL 702
D+ C + P RP+ ++ ++L+
Sbjct: 295 DIMKTCWDADPLKRPTFKQIVQLI 318
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+ E + +FG T F A W + E N M +D++ G I+ E+LT
Sbjct: 161 DCELKILDFGLARHTDDEMAGFVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT- 218
Query: 637 GRLTNAGSS 645
GR G+
Sbjct: 219 GRTLFPGTD 227
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 12/158 (7%)
Query: 491 FITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--------Y 542
+ R+ H N++RL+ C + L ++ + +RT D A
Sbjct: 56 LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIK 115
Query: 543 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK 602
++ RGL FLH +C I H DLK NI+ LA+FG + P
Sbjct: 116 DLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALAPVV 172
Query: 603 IA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ W + E +D++ G I E+ L
Sbjct: 173 VTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 210
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 42 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 101
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 102 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 156
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+ E + +FG T F A W + E N M +D++ G I+ E+LT
Sbjct: 157 DCELKILDFGLARHTDDEMAGFVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT- 214
Query: 637 GRLTNAGSS 645
GR G+
Sbjct: 215 GRTLFPGTD 223
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 30 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 86
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
LS ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 87 --LSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLINT 141
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 142 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 201
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 202 TRRALFPGDSEIDQ 215
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 31 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 87
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 88 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 142
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 143 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 202
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 203 TRRALFPGDSEIDQ 216
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 29 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 85
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
LS ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 86 --LSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 140
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 141 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 200
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 201 TRRALFPGDSEIDQ 214
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--YKIVLGVARGLCFLHH 557
H N+I+L +L++D + G L + + K + K KI+ + +C LH
Sbjct: 70 HPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHK 129
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
I H DLK NI+ D++M L +FGF
Sbjct: 130 ---LNIVHRDLKPENILLDDDMNIKLTDFGF 157
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 30 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 86
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 87 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 141
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 142 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 201
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 202 TRRALFPGDSEIDQ 215
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 28 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 84
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
LS ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 85 --LSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLINT 139
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 140 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 199
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 200 TRRALFPGDSEIDQ 213
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 29 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 85
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 86 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 140
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 141 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 200
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 201 TRRALFPGDSEIDQ 214
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 98/264 (37%), Gaps = 43/264 (16%)
Query: 469 TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ A R ++SE H N++ LLG C ++ +Y
Sbjct: 75 AAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCY 134
Query: 526 GNLSEKIRTKRD--------------------WAAKYKIVLGVARGLCFL-HHDCYPAIP 564
G+L +R KRD VA+G+ FL +C
Sbjct: 135 GDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCI---- 190
Query: 565 HGDLKASNIVFDENMEPHLAEFGFKYLTQ-----LADGSFPAKIAWTESGEFYNAMKEEM 619
H DL A NI+ + +FG + + G+ + W +N +
Sbjct: 191 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCV-YTF 249
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQDEIKLVL 678
DV+ +G + E+ + G S P+D +M E + S E+
Sbjct: 250 ESDVWSYGIFLWELFSLG-----SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEM---Y 301
Query: 679 DVALLCTRSTPSDRPSMEEALKLL 702
D+ C + P RP+ ++ ++L+
Sbjct: 302 DIMKTCWDADPLKRPTFKQIVQLI 325
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++K K + T ++ + + + + H N+++L YL+ +Y
Sbjct: 39 TGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASG 98
Query: 526 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + R K A +K++ ++ + + H I H DLKA N++ D +M
Sbjct: 99 GEVFDYLVAHGRMKEKEARSKFRQIVSAVQ---YCHQ---KRIVHRDLKAENLLLDADMN 152
Query: 581 PHLAEFGF 588
+A+FGF
Sbjct: 153 IKIADFGF 160
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 53 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 112
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 113 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 167
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+ E + +FG T + A W + E N M +D++ G I+ E+LT
Sbjct: 168 DCELKILDFGLARHTADEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT- 225
Query: 637 GRLTNAGSS 645
GR G+
Sbjct: 226 GRTLFPGTD 234
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 53 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 112
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 113 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 167
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+ E + +FG T + A W + E N M +D++ G I+ E+LT
Sbjct: 168 DCELKILDFGLARHTADEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT- 225
Query: 637 GRLTNAGSS 645
GR G+
Sbjct: 226 GRTLFPGTD 234
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 98/264 (37%), Gaps = 43/264 (16%)
Query: 469 TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
+TV+VK ++ A R ++SE H N++ LLG C ++ +Y
Sbjct: 70 AAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCY 129
Query: 526 GNLSEKIRTKRD--------------------WAAKYKIVLGVARGLCFL-HHDCYPAIP 564
G+L +R KRD VA+G+ FL +C
Sbjct: 130 GDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCI---- 185
Query: 565 HGDLKASNIVFDENMEPHLAEFGFKYLTQ-----LADGSFPAKIAWTESGEFYNAMKEEM 619
H DL A NI+ + +FG + + G+ + W +N +
Sbjct: 186 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCV-YTF 244
Query: 620 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQDEIKLVL 678
DV+ +G + E+ + G S P+D +M E + S E+
Sbjct: 245 ESDVWSYGIFLWELFSLG-----SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEM---Y 296
Query: 679 DVALLCTRSTPSDRPSMEEALKLL 702
D+ C + P RP+ ++ ++L+
Sbjct: 297 DIMKTCWDADPLKRPTFKQIVQLI 320
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI--RTKRDWAAKYKIVLGVA 549
I+ + ++ H N+I+L ++ YL+ ++ G L E+I R K D I+ +
Sbjct: 97 ISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQIL 156
Query: 550 RGLCFLHHDCYPAIPHGDLKASNIVFD 576
G+C+LH I H D+K NI+ +
Sbjct: 157 SGICYLHK---HNIVHRDIKPENILLE 180
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 66 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 125
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 126 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 180
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 181 DCELKILDFG---LARHTDDEMXGXVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 237
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 238 T-GRTLFPGTD 247
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 53 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 112
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 113 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 167
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+ E + +FG T + A W + E N M +D++ G I+ E+LT
Sbjct: 168 DCELKILDFGLARHTADEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT- 225
Query: 637 GRLTNAGSS 645
GR G+
Sbjct: 226 GRTLFPGTD 234
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 29 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 85
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 86 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLINT 140
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 141 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 200
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 201 TRRALFPGDSEIDQ 214
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 28 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 84
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 85 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 139
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 140 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 199
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 200 TRRALFPGDSEIDQ 213
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 31 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 87
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 88 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 142
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 143 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 202
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 203 TRRALFPGDSEIDQ 216
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 26 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 82
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 83 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 137
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 138 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 197
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 198 TRRALFPGDSEIDQ 211
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 30 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 86
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 87 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 141
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 142 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 201
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 202 TRRALFPGDSEIDQ 215
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 29 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 85
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 86 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 140
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 141 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 200
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 201 TRRALFPGDSEIDQ 214
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 26 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 82
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 83 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 137
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 138 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 197
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 198 TRRALFPGDSEIDQ 211
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 12/158 (7%)
Query: 491 FITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--------Y 542
+ R+ H N++RL+ C + L ++ + +RT D A
Sbjct: 56 LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIK 115
Query: 543 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK 602
++ RGL FLH +C I H DLK NI+ LA+FG + P
Sbjct: 116 DLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALDPVV 172
Query: 603 IA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ W + E +D++ G I E+ L
Sbjct: 173 VTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 210
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +F YL + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDF---YLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--YKIVLGVARGLCFLHH 557
H N+I+L +L++D + G L + + K + K KI+ + +C LH
Sbjct: 83 HPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHK 142
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
I H DLK NI+ D++M L +FGF
Sbjct: 143 ---LNIVHRDLKPENILLDDDMNIKLTDFGF 170
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 32/144 (22%)
Query: 565 HGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKE 617
H DL A N + E+M +A+FG Y Q P K ES + +
Sbjct: 160 HRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALES------LAD 213
Query: 618 EMYM---DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE----NEVGSSSSL 670
+Y DV+ FG + EI+T G+ AG ++N E+YN N +
Sbjct: 214 NLYTVHSDVWAFGVTMWEIMTRGQTPYAG--IEN-------AEIYNYLIGGNRLKQPPEC 264
Query: 671 QDEIKLVLDVALLCTRSTPSDRPS 694
+E V D+ C + P RPS
Sbjct: 265 MEE---VYDLMYQCWSADPKQRPS 285
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 26 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 82
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 83 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 137
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 138 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 197
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 198 TRRALFPGDSEIDQ 211
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 26 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 82
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 83 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 137
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 138 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 197
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 198 TRRALFPGDSEIDQ 211
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 28 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 84
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 85 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 139
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 140 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 199
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 200 TRRALFPGDSEIDQ 213
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 28 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 84
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 85 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLINT 139
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 140 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 199
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 200 TRRALFPGDSEIDQ 213
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--YKIVLGVARGLCFLHH 557
H N+I+L +L++D + G L + + K + K KI+ + +C LH
Sbjct: 83 HPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHK 142
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
I H DLK NI+ D++M L +FGF
Sbjct: 143 ---LNIVHRDLKPENILLDDDMNIKLTDFGF 170
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFCHSH---RVLHRDLKPQNLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 42 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 101
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 102 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 156
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 157 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 213
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 214 T-GRTLFPGTD 223
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 28 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 84
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 85 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 139
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 140 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 199
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 200 TRRALFPGDSEIDQ 213
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 58 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 115
Query: 529 SEKIRTKRDWAAKYKIVL------------GVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R A ++ +A G+ +L+ + + H DL A N +
Sbjct: 116 KSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 172
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 173 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 226
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 227 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 276
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 277 WQYNPKMRPSF---LEIISSIK 295
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILGFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 65 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 124
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 125 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 179
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 180 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 236
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 237 T-GRTLFPGTD 246
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 66 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 125
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 126 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 180
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 181 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 237
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 238 T-GRTLFPGTD 247
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 56 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 115
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 116 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 170
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 171 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 227
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 228 T-GRTLFPGTD 237
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 52 TGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 111
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 112 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 166
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + +FG L + D +A W + E N M +D++ G I+ E+L
Sbjct: 167 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 223
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 224 T-GRTLFPGTD 233
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 469 TGITVSVKKIEWGATR----IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
TG V+VK + R + + I + RH ++I+L +++ +Y+
Sbjct: 40 TGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVS 99
Query: 525 NGNLSEKI--RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G L + I + D ++ + G+ + H + H DLK N++ D +M
Sbjct: 100 GGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAK 156
Query: 583 LAEFGFKYLTQLADGSF 599
+A+FG + ++DG F
Sbjct: 157 IADFGLSNM--MSDGEF 171
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 48 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 105
Query: 529 SEKIRTKRDWAAKYKIVL------------GVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R A ++ +A G+ +L+ + + H DL A N +
Sbjct: 106 KSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 162
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 163 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 216
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 217 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 266
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 267 WQYNPKMRPSF---LEIISSIK 285
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 469 TGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++K ++ G+ +I +E I + +RH+++ +L ++ +++ +Y P
Sbjct: 34 TGEMVAIKIMDKNTLGSDLPRIKTE-IEALKNLRHQHICQLYHVLETANKIFMVLEYCPG 92
Query: 526 GNLSEKIRTKRDWAAKYKIVL--GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
G L + I ++ + + V+ + + ++H Y H DLK N++FDE + L
Sbjct: 93 GELFDYIISQDRLSEEETRVVFRQIVSAVAYVHSQGYA---HRDLKPENLLFDEYHKLKL 149
Query: 584 AEFGF 588
+FG
Sbjct: 150 IDFGL 154
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I+ G+ E + + H+ L++L G C + +++ +Y+ NG L +
Sbjct: 51 VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL 110
Query: 533 RTKRDWAAKYKIVLGVARGLC-FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KY 590
R R + + +L + + +C + + H DL A N + ++ +++FG +Y
Sbjct: 111 REMRH-RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY 169
Query: 591 L-----TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ T FP + W+ E K D++ FG ++ EI + G++
Sbjct: 170 VLDDEETSSVGSKFPVR--WSPP-EVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 220
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 102 ELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 160
+L L+ H++ +F +L +LI LDIS + F G L +L VL NS
Sbjct: 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480
Query: 161 FSGS-VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN 207
F + +P ++L +L L+L+ P+ F S SL+ L+++ N
Sbjct: 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 89/217 (41%), Gaps = 46/217 (21%)
Query: 102 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRN---NFSGHFPGGIQ------------ 146
E +DL+ + SF G F SL LD+S N S +F G Q
Sbjct: 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433
Query: 147 ---------SLRNLLVLD--------AFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGP- 188
SLRNL+ LD AF+ F+G L L+VL +AG+ F
Sbjct: 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENF 485
Query: 189 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYN--FYQGNIPWQLGNMSE 246
+P F ++L FL L+ L P L ++ + + +N F P++ N
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--S 543
Query: 247 VQYLDIAGANLSGSIPKELSNL-TKLESLFLFRNQLA 282
+Q LD + ++ S +EL + + L L L +N A
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 198 SLEFLHLAGNLLNDQIPAELGMLKTVT--HMEIGYNFYQGNIPWQLGNMSEVQYLDIAGA 255
SLEFL L+ N L+ + T++ ++++ +N LG + ++++LD +
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHS 430
Query: 256 NLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV---------TTLKSLDLSDNRLS 306
NL K++S + SL RN + + +RV ++L+ L ++ N
Sbjct: 431 NL-----KQMSEFSVFLSL---RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482
Query: 307 GP-IPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFI-WNNYFS 354
+P+ F +L+NL L L ++ P + L SL++L + NN+FS
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Query: 105 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS 164
+L+LS N F+ L LD+SR G QSL +L L N
Sbjct: 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115
Query: 165 VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELGMLKTV 223
S L L+ L + + G K+L+ L++A NL+ ++P L +
Sbjct: 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175
Query: 224 THMEIGYNFYQG 235
H+++ N Q
Sbjct: 176 EHLDLSSNKIQS 187
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 33/226 (14%)
Query: 130 LDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPI 189
L +SRN+ G L NL L+ F N + L LK L L + I
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-I 151
Query: 190 PS-QFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ 248
PS F SL L +LG LK ++++ G ++G +S ++
Sbjct: 152 PSYAFNRIPSLRRL-------------DLGELKRLSYISEGA--FEG--------LSNLR 188
Query: 249 YLDIAGANLSGSIPKELSNLT---KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRL 305
YL++A NL +E+ NLT KL+ L L N L+ P F + L+ L + +++
Sbjct: 189 YLNLAMCNL-----REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 306 SGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
+F +L++L ++L +N ++ + L LE + + +N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 267 NLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMY 326
+L LE L L RN + F+ + L +L+L DNRL+ +F L L+ L L
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 327 NEMSGTVPESLVQLPSLEIL 346
N + + ++PSL L
Sbjct: 146 NPIESIPSYAFNRIPSLRRL 165
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI 603
+V + RGL ++H I H DLK SN+ +E+ E + +FG L + AD +
Sbjct: 128 LVYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCELRILDFG---LARQADEEMTGYV 181
Query: 604 A--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRL 639
A W + E N M +D++ G I+ E+L L
Sbjct: 182 ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKAL 220
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFL 555
+RH N++R+ + ++R + YL+ ++ P G L ++++ + D + +A L +
Sbjct: 71 LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYC 130
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 131 HER---KVIHRDIKPENLLMGYKGELKIADFGW 160
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 45 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 102
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N
Sbjct: 103 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCXVA 159
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 160 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 213
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++L++ +C
Sbjct: 214 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLLELMRMC 263
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 264 WQYNPKMRPSF---LEIISSIK 282
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFL 555
+RH N++R+ + ++R + YL+ ++ P G L ++++ + D + +A L +
Sbjct: 72 LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYC 131
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 132 HER---KVIHRDIKPENLLMGYKGELKIADFGW 161
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFL 555
+RH N++R+ + ++R + YL+ ++ P G L ++++ + D + +A L +
Sbjct: 71 LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYC 130
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 131 HER---KVIHRDIKPENLLMGYKGELKIADFGW 160
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 17/176 (9%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 529
V+VK + A + + F +G +R H N++ +G+ Q ++ + +L
Sbjct: 49 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLY 107
Query: 530 EKI---RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
+ TK + I ARG+ +LH +I H DLK++NI E+ + +F
Sbjct: 108 HHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDF 164
Query: 587 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 635
G GS I W E ++ DVY FG ++ E++T
Sbjct: 165 GLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 220
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I+ G+ E + + H+ L++L G C + +++ +Y+ NG L +
Sbjct: 51 VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL 110
Query: 533 RTKRDWAAKYKIVLGVARGLC-FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KY 590
R R + + +L + + +C + + H DL A N + ++ +++FG +Y
Sbjct: 111 REMRH-RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY 169
Query: 591 L-----TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ T FP + W+ E K D++ FG ++ EI + G++
Sbjct: 170 VLDDEYTSSVGSKFPVR--WSPP-EVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 220
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++KKI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 30 TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEH--- 86
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
+ + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 87 --VDQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 141
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 142 EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 201
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 202 TRRALFPGDSEIDQ 215
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 102 ELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 160
+L L+ H++ +F +L +LI LDIS + F G L +L VL NS
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 161 FSGS-VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN 207
F + +P ++L +L L+L+ P+ F S SL+ L+++ N
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 90/217 (41%), Gaps = 46/217 (21%)
Query: 102 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRN---NFSGHFPGGIQ------------ 146
E +DL+ + SF G F TSL LD+S N S +F G Q
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Query: 147 ---------SLRNLLVLD--------AFSNSFSGSVPAEISQLEHLKVLNLAGSYFS-GP 188
SLRNL+ LD AF+ F+G L L+VL +AG+ F
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENF 461
Query: 189 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYN--FYQGNIPWQLGNMSE 246
+P F ++L FL L+ L P L ++ + + +N F P++ N
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--S 519
Query: 247 VQYLDIAGANLSGSIPKELSNL-TKLESLFLFRNQLA 282
+Q LD + ++ S +EL + + L L L +N A
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 244 MSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV---------TT 294
+ ++++LD +NL K++S + SL RN + + +RV ++
Sbjct: 395 LEQLEHLDFQHSNL-----KQMSEFSVFLSL---RNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 295 LKSLDLSDNRLSGP-IPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFI-WNNY 352
L+ L ++ N +P+ F +L+NL L L ++ P + L SL++L + NN+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 353 FS 354
FS
Sbjct: 507 FS 508
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFL 555
+ H N++RL + Y+R + YL+ +Y P G L ++++ D I+ +A L +
Sbjct: 80 LHHPNILRLYNYFYDRRRIYLILEYAPRGELYKELQKSCTFDEQRTATIMEELADALMYC 139
Query: 556 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
H + H D+K N++ E +A+FG+
Sbjct: 140 HGK---KVIHRDIKPENLLLGLKGELKIADFGW 169
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 212 QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL 271
+IP L +T+T + + N + P +++ +D++ +S P L L
Sbjct: 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 272 ESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG 331
SL L+ N++ F + +L+ L L+ N+++ ++F DL NL LLSL N++
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 332 TVPESLVQLPSLEILFIWNNYF 353
+ L +++ + + N F
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI 603
++ + RGL ++H I H DLK SN+ +E+ E + +FG L + D +
Sbjct: 126 LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG---LARHTDDEMTGYV 179
Query: 604 A--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSS 645
A W + E N M +D++ G I+ E+LT GR G+
Sbjct: 180 ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT-GRTLFPGTD 223
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 212 QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL 271
+IP L +T+T + + N + P +++ +D++ +S P L L
Sbjct: 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 272 ESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG 331
SL L+ N++ F + +L+ L L+ N+++ ++F DL NL LLSL N++
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 332 TVPESLVQLPSLEILFIWNNYF 353
+ L +++ + + N F
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 254 GANLSGSIPKELSN-LTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES 312
G N S+P + N LT L L L NQL F ++T LK L L+ N+L
Sbjct: 60 GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV 119
Query: 313 FADLKNLRLLSLMYNEMSGTVPESLV-QLPSLEILFIWNNYFSGSLPENLGRNSKLRWVD 371
F L L+ L L N++ +VP+ + +L SL+ +++ +N + + P G W++
Sbjct: 120 FDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP---GIRYLSEWIN 175
Query: 372 VST---NNFNGSIPPD--ICSG 388
+ N GS+ PD CSG
Sbjct: 176 KHSGVVRNSAGSVAPDSAKCSG 197
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 232 FYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQLAGQVPWEFS 290
+ QG G ++ YLD+ +L S+P + LT L L+L N+L F+
Sbjct: 15 YSQGRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73
Query: 291 RVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWN 350
++T+L L+LS N+L F L L+ L+L N++ +L L+ L ++
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 351 NYFSGSLPENL-GRNSKLRWVDVSTNNFNGSIP 382
N S+P+ + R + L+++ + N ++ + P
Sbjct: 134 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 264 ELSNLTKLESLFLFRNQLAGQVPWEFS--RVTTLKSLDLSDNRLSGPIPESFADLKNLRL 321
ELSN T +++L L NQL FS + T L LDLS N L SF+ L +LR
Sbjct: 218 ELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRY 276
Query: 322 LSLMYNEMSGTVPESLVQLPSLEIL 346
LSL YN + P S L +L L
Sbjct: 277 LSLEYNNIQRLSPRSFYGLSNLRYL 301
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 115/279 (41%), Gaps = 17/279 (6%)
Query: 106 LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 165
LNL+HN P + L LD N+ S P Q L L VL+ N S
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 166 PAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTH 225
+L L+L + + F + K+L L L+ N L+ +LG + +
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS---TKLGTGVQLEN 146
Query: 226 MEIGYNFYQGNIPWQ------LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 279
++ + + LGN S ++ LD++ L P + KL +L L
Sbjct: 147 LQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNA 205
Query: 280 Q----LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLK--NLRLLSLMYNEMSGTV 333
Q L ++ WE S T++++L L++N+L +F+ LK NL L L YN +
Sbjct: 206 QLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVG 264
Query: 334 PESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDV 372
S LPSL L + N P + S LR++ +
Sbjct: 265 NGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 8/196 (4%)
Query: 203 HLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP 262
HL + D +P+ +T + + +N + P S++ LD ++S P
Sbjct: 13 HLKLTHIPDDLPS------NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 263 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLL 322
+ L L+ L L N+L+ F T L LDL N + F + KNL L
Sbjct: 67 ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKL 126
Query: 323 SLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG--RNSKLRWVDVSTNNFNGS 380
L +N +S T + VQL +L+ L + N E L NS LR +D+S+N
Sbjct: 127 DLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEF 186
Query: 381 IPPDICSGGVLFKLIL 396
P + G LF L+L
Sbjct: 187 SPGCFQTIGKLFALLL 202
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 85/182 (46%), Gaps = 21/182 (11%)
Query: 469 TGITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
TG+ V++K++ E G I I+ + ++H+N++RL + ++ L+++++
Sbjct: 29 TGVYVALKEVKLDSEEGTPSTAIRE--ISLMKELKHENIVRLYDVIHTENKLTLVFEFMD 86
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFD 576
N +L + + ++ + L + + GL F H + I H DLK N++ +
Sbjct: 87 N-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLIN 142
Query: 577 ENMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGE-FYNAMKEEMYMDVYGFGEIILEI 633
+ + L +FG + +F +++ W + + + +D++ G I+ E+
Sbjct: 143 KRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEM 202
Query: 634 LT 635
+T
Sbjct: 203 IT 204
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 44/255 (17%)
Query: 469 TGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VK+++ G + + I + + +++ G Y R L+ +YLP+
Sbjct: 38 TGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPS 97
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCY-------PAIPHGDLKASNIVFDEN 578
G L RD+ +++ L +R L + C H DL A NI+ +
Sbjct: 98 GCL-------RDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESE 150
Query: 579 MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE------EMYMDVYGFGEIILE 632
+A+FG L L D + +S F+ A + DV+ FG ++ E
Sbjct: 151 AHVKIADFGLAKLLPL-DKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYE 209
Query: 633 ILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL-------------VLD 679
+ T + + P L M +E +V + S L + ++ V +
Sbjct: 210 LFTYCDKSCS-------PSAEFLRMMGSERDVPALSRLLELLEEGQRLPAPPACPAEVHE 262
Query: 680 VALLCTRSTPSDRPS 694
+ LC +P DRPS
Sbjct: 263 LMKLCWAPSPQDRPS 277
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 45 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 102
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N +
Sbjct: 103 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 159
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 160 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 213
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 214 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 263
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 264 WQYNPKMRPSF---LEIISSIK 282
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 51 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 108
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N +
Sbjct: 109 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 165
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 166 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 219
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 220 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 269
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 270 WQYNPKMRPSF---LEIISSIK 288
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 80 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 137
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N +
Sbjct: 138 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 194
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 195 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 248
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 249 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 298
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 299 WQYNPKMRPSF---LEIISSIK 317
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 26/115 (22%)
Query: 165 VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVT 224
+PAEI L +L+VL+L+ + + +P++ GS L++ + N++
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-------------- 306
Query: 225 HMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 279
+PW+ GN+ +Q+L + G L K L+ + +F R+
Sbjct: 307 -----------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD 350
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 237 IPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLK 296
+P ++ N+S ++ LD++ L+ S+P EL + +L+ + F N + +PWEF + L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQ 319
Query: 297 SLDLSDNRL 305
L + N L
Sbjct: 320 FLGVEGNPL 328
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 37/172 (21%)
Query: 100 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 159
++ L L L+ NS + + P EI NL++L LD+S N +
Sbjct: 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--------------------- 283
Query: 160 SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 219
S+PAE+ LK + + +P +FG+ +L+FL + GN P E
Sbjct: 284 ----SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN------PLEKQF 332
Query: 220 LKTVTHMEI-GYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTK 270
LK +T + G FY + ++ E ++++I N G +E +L +
Sbjct: 333 LKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEI---NTDGEPQREYDSLQQ 381
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 271 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 330
L L+L N L ++P E ++ L+ LDLS NRL+ +P L+ ++ M
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYF-YFFDNMV 305
Query: 331 GTVPESLVQLPSLEILFIWNN 351
T+P L +L+ L + N
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGN 326
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 49 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 106
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N +
Sbjct: 107 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 163
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 164 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 217
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 218 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 267
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 268 WQYNPKMRPSF---LEIISSIK 286
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI 603
+V + RGL ++H I H DLK SN+ +E+ E + +FG L + AD +
Sbjct: 136 LVYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDSELRILDFG---LARQADEEMTGYV 189
Query: 604 A--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRL 639
A W + E N M +D++ G I+ E+L L
Sbjct: 190 ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKAL 228
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 58 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 115
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N +
Sbjct: 116 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 172
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 173 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 226
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 227 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 276
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 277 WQYNPKMRPSF---LEIISSIK 295
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 24/183 (13%)
Query: 469 TGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VK+++ G + + I + + +++ G Y R L+ +YLP+
Sbjct: 39 TGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPS 98
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCY-------PAIPHGDLKASNIVFDEN 578
G L RD+ +++ L +R L + C H DL A NI+ +
Sbjct: 99 GCL-------RDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESE 151
Query: 579 MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE------EMYMDVYGFGEIILE 632
+A+FG L L D + +S F+ A + DV+ FG ++ E
Sbjct: 152 AHVKIADFGLAKLLPL-DKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYE 210
Query: 633 ILT 635
+ T
Sbjct: 211 LFT 213
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI 603
+V + RGL ++H I H DLK SN+ +E+ E + +FG L + AD +
Sbjct: 136 LVYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDSELRILDFG---LARQADEEMTGYV 189
Query: 604 A--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRL 639
A W + E N M +D++ G I+ E+L L
Sbjct: 190 ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKAL 228
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 24/183 (13%)
Query: 469 TGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VK+++ G + + I + + +++ G Y R L+ +YLP+
Sbjct: 51 TGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPS 110
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCY-------PAIPHGDLKASNIVFDEN 578
G L RD+ +++ L +R L + C H DL A NI+ +
Sbjct: 111 GCL-------RDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESE 163
Query: 579 MEPHLAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILE 632
+A+FG L L + + I W + + DV+ FG ++ E
Sbjct: 164 AHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQ-SDVWSFGVVLYE 222
Query: 633 ILT 635
+ T
Sbjct: 223 LFT 225
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 123/303 (40%), Gaps = 19/303 (6%)
Query: 66 SGVKCNKNNTIVVGINLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLT 125
S KC ++ + +L + + LP + LNL+HN +
Sbjct: 8 STTKCTVSHEVADCSHLKLTQVPDDLPTN--------ITVLNLTHNQLRRLPAANFTRYS 59
Query: 126 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYF 185
L SLD+ N S P Q L L VL+ N S + +L L+L +
Sbjct: 60 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Query: 186 SGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNM- 244
+ F K+L L L+ N L+ L+ + + + N Q +L
Sbjct: 120 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 179
Query: 245 -SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFS---RVTTLKSLDL 300
S ++ L+++ + P + +L LFL QL + + T++++L L
Sbjct: 180 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 239
Query: 301 SDNRLSGPIPESFADLK--NLRLLSLMYNEMSGTVPESLVQLPSLEILFI-WNN---YFS 354
S+++LS +F LK NL +L L YN ++ +S LP LE F+ +NN FS
Sbjct: 240 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 299
Query: 355 GSL 357
SL
Sbjct: 300 HSL 302
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 4/187 (2%)
Query: 212 QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL 271
Q+P +L +T + + +N + S++ LD+ +S P+ L L
Sbjct: 28 QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 85
Query: 272 ESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG 331
+ L L N+L+ F+ T L L L N + F KNL L L +N +S
Sbjct: 86 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Query: 332 TVPESLVQLPSLEILFIWNNYFSGSLPENLG--RNSKLRWVDVSTNNFNGSIPPDICSGG 389
T + VQL +L+ L + NN E L NS L+ +++S+N P + G
Sbjct: 146 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 205
Query: 390 VLFKLIL 396
LF L L
Sbjct: 206 RLFGLFL 212
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 43 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 100
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N +
Sbjct: 101 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 157
Query: 577 ENMEPHLAEFGFKYLTQLAD-------GSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG D G P + ES G F Y DV+ F
Sbjct: 158 EDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 211
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++L++ +C
Sbjct: 212 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLLELMRMC 261
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 262 WQYNPKMRPSF---LEIISSIK 280
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + + G L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDAG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 52 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 109
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N +
Sbjct: 110 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 166
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 167 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 220
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 221 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 270
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 271 WQYNPKMRPSF---LEIISSIK 289
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + + G L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDRG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I+ G+ E + + H+ L++L G C + +++ +Y+ NG L +
Sbjct: 35 VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL 94
Query: 533 RTKRDWAAKYKIVLGVARGLC-FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KY 590
R R + + +L + + +C + + H DL A N + ++ +++FG +Y
Sbjct: 95 REMRH-RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY 153
Query: 591 L-----TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ T FP + W+ E K D++ FG ++ EI + G++
Sbjct: 154 VLDDEYTSSVGSKFPVR--WS-PPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 204
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 467 LPTGITVSVKKIE----WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY 522
+ TG+ V++K I+ + A ++ V + ++H +++ L + + + YL+ +
Sbjct: 33 IHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEM 92
Query: 523 LPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 578
NG ++ ++ + + A++ + + G+ +LH I H DL SN++ N
Sbjct: 93 CHNGEMNRYLKNRVKPFSENEARH-FMHQIITGMLYLHSH---GILHRDLTLSNLLLTRN 148
Query: 579 MEPHLAEFGFKYLTQLADGSFPAKIAWTESG 609
M +A+FG TQL P + +T G
Sbjct: 149 MNIKIADFGLA--TQL---KMPHEKHYTLCG 174
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I+ G+ E + + H+ L++L G C + +++ +Y+ NG L +
Sbjct: 36 VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL 95
Query: 533 RTKRDWAAKYKIVLGVARGLC-FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KY 590
R R + + +L + + +C + + H DL A N + ++ +++FG +Y
Sbjct: 96 REMRH-RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY 154
Query: 591 L-----TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ T FP + W+ E K D++ FG ++ EI + G++
Sbjct: 155 VLDDEYTSSVGSKFPVR--WS-PPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 205
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 51 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 108
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N +
Sbjct: 109 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 165
Query: 577 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG Y + G P + ES G F Y DV+ F
Sbjct: 166 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 219
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 220 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 269
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 270 WQYNPKMRPSF---LEIISSIK 288
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I+ G+ E + + H+ L++L G C + +++ +Y+ NG L +
Sbjct: 42 VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL 101
Query: 533 RTKRDWAAKYKIVLGVARGLC-FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KY 590
R R + + +L + + +C + + H DL A N + ++ +++FG +Y
Sbjct: 102 REMRH-RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY 160
Query: 591 L-----TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ T FP + W+ E K D++ FG ++ EI + G++
Sbjct: 161 VLDDEYTSSVGSKFPVR--WSPP-EVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 211
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 102 ELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 160
+L L+ H++ +F +L +LI LDIS + F G L +L VL NS
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 161 FSGS-VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN 207
F + +P ++L +L L+L+ P+ F S SL+ L+++ N
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 244 MSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV---------TT 294
+ ++++LD +NL K++S + SL RN + + +RV ++
Sbjct: 100 LEQLEHLDFQHSNL-----KQMSEFSVFLSL---RNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 295 LKSLDLSDNRLSGP-IPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFI-WNNY 352
L+ L ++ N +P+ F +L+NL L L ++ P + L SL++L + NN+
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 353 FS 354
FS
Sbjct: 212 FS 213
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 103 LVDLNLSHN----SFSGQFPVEIFN-LTSLISLDISRNNFSGHF-PGGIQSLRNLLVLDA 156
L+ L++SH +F+G IFN L+SL L ++ N+F +F P LRNL LD
Sbjct: 128 LIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182
Query: 157 FSNSFSGSVPAEISQLEHLKVLNLAGSYF 185
P + L L+VLN++ + F
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 123/303 (40%), Gaps = 19/303 (6%)
Query: 66 SGVKCNKNNTIVVGINLSMKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLT 125
S KC ++ + +L + + LP + LNL+HN +
Sbjct: 3 STTKCTVSHEVADCSHLKLTQVPDDLPTN--------ITVLNLTHNQLRRLPAANFTRYS 54
Query: 126 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYF 185
L SLD+ N S P Q L L VL+ N S + +L L+L +
Sbjct: 55 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Query: 186 SGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNM- 244
+ F K+L L L+ N L+ L+ + + + N Q +L
Sbjct: 115 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 174
Query: 245 -SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFS---RVTTLKSLDL 300
S ++ L+++ + P + +L LFL QL + + T++++L L
Sbjct: 175 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 234
Query: 301 SDNRLSGPIPESFADLK--NLRLLSLMYNEMSGTVPESLVQLPSLEILFI-WNN---YFS 354
S+++LS +F LK NL +L L YN ++ +S LP LE F+ +NN FS
Sbjct: 235 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 294
Query: 355 GSL 357
SL
Sbjct: 295 HSL 297
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 4/187 (2%)
Query: 212 QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL 271
Q+P +L +T + + +N + S++ LD+ +S P+ L L
Sbjct: 23 QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 80
Query: 272 ESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG 331
+ L L N+L+ F+ T L L L N + F KNL L L +N +S
Sbjct: 81 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Query: 332 TVPESLVQLPSLEILFIWNNYFSGSLPENLG--RNSKLRWVDVSTNNFNGSIPPDICSGG 389
T + VQL +L+ L + NN E L NS L+ +++S+N P + G
Sbjct: 141 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 200
Query: 390 VLFKLIL 396
LF L L
Sbjct: 201 RLFGLFL 207
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 27/247 (10%)
Query: 106 LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 165
LNL NS +L L L +S+N G L +L L+ F N +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 166 PAEISQLEHLKVLNLAGSYFSGPIPS-QFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVT 224
L L+ L L + IPS F SL L +LG LK +
Sbjct: 100 TQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRL-------------DLGELKRLE 145
Query: 225 HMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQ 284
+ I ++G + ++YL++ NL IP L+ L +LE L L N+L
Sbjct: 146 Y--ISEAAFEG--------LVNLRYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLI 193
Query: 285 VPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLE 344
P F +T+L+ L L +++ +F DLK+L L+L +N + + L LE
Sbjct: 194 RPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLE 253
Query: 345 ILFIWNN 351
+ + +N
Sbjct: 254 RVHLNHN 260
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%)
Query: 247 VQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS 306
+YL++ ++ +L LE L L +N + F+ + +L +L+L DNRL+
Sbjct: 37 TRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 307 GPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEIL 346
++F L LR L L N + + ++PSL L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 124 LTSLISLDISRN--NFSG---HFPGGIQSLRNLLVLDAFSNSFSGSV--PAEISQLEHLK 176
L SL LD+SRN +FSG + G SLR+L + SF+G++ A LE L+
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL------SFNGAIIMSANFMGLEELQ 402
Query: 177 VLNLAGSYFSGPIPSQFGSFKSLE-FLHLAGNLLNDQIPAE---LGMLKTVTHMEIGYNF 232
L+ S ++F +F SLE L+L + N +I + LG+ T G +F
Sbjct: 403 HLDFQHSTLKRV--TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 233 YQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV 292
+ N + + +LD++ L L +L+ L + N L ++++
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520
Query: 293 TTLKSLDLSDNRL 305
+L +LD S NR+
Sbjct: 521 YSLSTLDCSFNRI 533
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 211 DQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGA--------------N 256
D IP+ + ++++ +N + + N SE+Q+LD++ +
Sbjct: 28 DDIPS------STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 257 LSGSI----------PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRL- 305
LS I P S LT LE+L +LA + ++ TLK L+++ N +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 306 SGPIPESFADLKNLRLLSLMYN 327
S +P F++L NL + L YN
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYN 163
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 144 GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA-GSYFSGPIPSQFGSFKSLEFL 202
G+ L NL++ SFS + ++ LE+L + S S PI G +L+ L
Sbjct: 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI----GQLITLKKL 133
Query: 203 HLAGNLLND-QIPAELGMLKTVTHMEIGYNFYQ 234
++A N ++ ++PA L + H+++ YN+ Q
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I+ G+ E + + H+ L++L G C + +++ +Y+ NG L +
Sbjct: 31 VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL 90
Query: 533 RTKRDWAAKYKIVLGVARGLC-FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KY 590
R R + + +L + + +C + + H DL A N + ++ +++FG +Y
Sbjct: 91 REMRH-RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY 149
Query: 591 L-----TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ T FP + W+ E K D++ FG ++ EI + G++
Sbjct: 150 VLDDEYTSSVGSKFPVR--WS-PPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 200
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 124 LTSLISLDISRN--NFSG---HFPGGIQSLRNLLVLDAFSNSFSGSV--PAEISQLEHLK 176
L SL LD+SRN +FSG + G SLR+L + SF+G++ A LE L+
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL------SFNGAIIMSANFMGLEELQ 397
Query: 177 VLNLAGSYFSGPIPSQFGSFKSLE-FLHLAGNLLNDQIPAE---LGMLKTVTHMEIGYNF 232
L+ S ++F +F SLE L+L + N +I + LG+ T G +F
Sbjct: 398 HLDFQHSTLKRV--TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 455
Query: 233 YQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV 292
+ N + + +LD++ L L +L+ L + N L ++++
Sbjct: 456 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 515
Query: 293 TTLKSLDLSDNRL 305
+L +LD S NR+
Sbjct: 516 YSLSTLDCSFNRI 528
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 211 DQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGA--------------N 256
D IP+ + ++++ +N + + N SE+Q+LD++ +
Sbjct: 23 DDIPS------STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 76
Query: 257 LSGSI----------PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRL- 305
LS I P S LT LE+L +LA + ++ TLK L+++ N +
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
Query: 306 SGPIPESFADLKNLRLLSLMYN 327
S +P F++L NL + L YN
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYN 158
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 144 GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA-GSYFSGPIPSQFGSFKSLEFL 202
G+ L NL++ SFS + ++ LE+L + S S PI G +L+ L
Sbjct: 73 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI----GQLITLKKL 128
Query: 203 HLAGNLLND-QIPAELGMLKTVTHMEIGYNFYQ 234
++A N ++ ++PA L + H+++ YN+ Q
Sbjct: 129 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++ KI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 27 TGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 83
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 84 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 138
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 139 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 198
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 199 TRRALFPGDSEIDQ 212
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 22/194 (11%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V++ KI + S I I ++ H N+++LL + ++ YL++++
Sbjct: 26 TGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 82
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 577
L + ++ D +A I L + + GL F H + H DLK N++ +
Sbjct: 83 --LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 137
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMK-EEMYMDVYGFGEIILEIL 634
LA+FG + ++ ++ W + E K +D++ G I E++
Sbjct: 138 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 197
Query: 635 TNGRLTNAGSSLQN 648
T L S +
Sbjct: 198 TRRALFPGDSEIDQ 211
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 24/183 (13%)
Query: 469 TGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 525
TG V+VK+++ G + + I + + +++ G Y R + L+ +YLP+
Sbjct: 35 TGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRPELRLVMEYLPS 94
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCY-------PAIPHGDLKASNIVFDEN 578
G L RD+ +++ L +R L + C H DL A NI+ +
Sbjct: 95 GCL-------RDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESE 147
Query: 579 MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE------EMYMDVYGFGEIILE 632
+A+FG L L D +S F+ A + DV+ FG ++ E
Sbjct: 148 AHVKIADFGLAKLLPL-DKDXXVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYE 206
Query: 633 ILT 635
+ T
Sbjct: 207 LFT 209
>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 469 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 519
TG+ V+VKK+ I K + + ++H+N+I LL F R + YL+
Sbjct: 46 TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 520 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 577
+L +L+ ++ ++ D ++ ++ + RGL ++H I H DLK SN+ +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 578 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 634
+ E + + G L + D +A W + E N M +D++ G I+ E+L
Sbjct: 161 DCELKILDGG---LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 217
Query: 635 TNGRLTNAGSS 645
T GR G+
Sbjct: 218 T-GRTLFPGTD 227
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWA---AKYKIVLGVARGLCFLH 556
H N+++L +++ +L+ + L G L E+I+ K+ ++ A Y I+ + + +H
Sbjct: 65 HPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASY-IMRKLVSAVSHMH 123
Query: 557 HDCYPAIPHGDLKASNIVF---DENMEPHLAEFGFKYL 591
+ H DLK N++F ++N+E + +FGF L
Sbjct: 124 D---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARL 158
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 25/193 (12%)
Query: 469 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG V+VK K + ++ ++ + + + H N+++L YL+ +Y
Sbjct: 38 TGKEVAVKIIDKTQLNSSSLQKLFREVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASG 97
Query: 526 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G + + + R K A AK++ ++ + + H I H DLKA N++ D +
Sbjct: 98 GEVFDYLVAHGRXKEKEARAKFRQIVSAVQ---YCHQKF---IVHRDLKAENLLLDADXN 151
Query: 581 PHLAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 634
+A+FGF + G+ P G+ Y+ + +DV+ G +IL L
Sbjct: 152 IKIADFGFSNEFTFGNKLDAFCGAPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 206
Query: 635 TNGRLTNAGSSLQ 647
+G L G +L+
Sbjct: 207 VSGSLPFDGQNLK 219
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 246 EVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWE--FSRVTTLKSLDLSDN 303
E +D G L IP+++ T L L N+L G++ + F R+ L L+L N
Sbjct: 9 EGTTVDCTGRGLK-EIPRDIPLHTT--ELLLNDNEL-GRISSDGLFGRLPHLVKLELKRN 64
Query: 304 RLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGR 363
+L+G P +F +++ L L N++ + + L L+ L +++N S +P +
Sbjct: 65 QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124
Query: 364 NSKLRWVDVSTNNFN 378
+ L +++++N FN
Sbjct: 125 LNSLTSLNLASNPFN 139
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V++K I+ G+ E + + H+ L++L G C + +++ +Y+ NG L +
Sbjct: 36 VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL 95
Query: 533 RTKRDWAAKYKIVLGVARGLC-FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KY 590
R R + + +L + + +C + + H DL A N + ++ +++FG +Y
Sbjct: 96 REMRH-RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY 154
Query: 591 L-----TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+ T FP + W+ E K D++ FG ++ EI + G++
Sbjct: 155 VLDDEYTSSRGSKFPVR--WSPP-EVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 205
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 55/272 (20%)
Query: 472 TVSVKKIEWGATRIKI---VSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 528
TV+VK ++ A+ ++ +SEF + V H ++I+L G C L+ +Y G+L
Sbjct: 55 TVAVKMLKENASPSELRDLLSEFNV-LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
Query: 529 SEKIRTKR------------------DWAAKYKIVLG--------VARGLCFLHHDCYPA 562
+R R D + + +G +++G+ +L +
Sbjct: 114 RGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMS 170
Query: 563 IPHGDLKASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTES--GEFYN 613
+ H DL A NI+ E + +++FG + + G P K ES Y
Sbjct: 171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYT 230
Query: 614 AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE 673
DV+ FG ++ EI+T G G+ P + L + + + + +E
Sbjct: 231 TQS-----DVWSFGVLLWEIVTLG-----GNPYPGIPPERLFNLLKTGHRMERPDNCSEE 280
Query: 674 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
+ ++ L C + P RP + K L +
Sbjct: 281 MYRLM---LQCWKQEPDKRPVFADISKDLEKM 309
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 459 SAAGCKAVLPTGITVSVKKIEWGATRIKIVS-----EFITRIGTVRHKNLIRLLGFCYNR 513
SA G K PT TV+VK ++ GAT + + + +T IG H N++ LLG C +
Sbjct: 47 SAFGIKKS-PTCRTVAVKMLKEGATASEYKALMTELKILTHIG--HHLNVVNLLGACTKQ 103
Query: 514 HQAYL-LYDYLPNGNLSEKIRTKRD 537
+ + +Y GNLS +++KRD
Sbjct: 104 GGPLMVIVEYCKYGNLSNYLKSKRD 128
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 18/164 (10%)
Query: 548 VARGLCFLH-HDCYPAIPHGDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPA 601
VARG+ FL C H DL A NI+ EN + +FG +K + G
Sbjct: 208 VARGMEFLSSRKCI----HRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRL 263
Query: 602 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE 661
+ W ++ + DV+ +G ++ EI + G G + L M
Sbjct: 264 PLKWMAPESIFDKIY-STKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMR 322
Query: 662 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
S+ + + L C P +RP E ++ L L
Sbjct: 323 APEYSTPE-------IYQIMLDCWHRDPKERPRFAELVEKLGDL 359
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 488 VSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL----SEKIRTKRDWAAKYK 543
V I+ + +RH ++I+L ++ +Y G L EK R D ++
Sbjct: 56 VEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEY-AGGELFDYIVEKKRMTEDEGRRFF 114
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI 603
+ A C H I H DLK N++ D+N+ +A+FG + + DG+F
Sbjct: 115 QQIICAIEYCHRH-----KIVHRDLKPENLLLDDNLNVKIADFGLSNI--MTDGNFLKTS 167
Query: 604 AWTESGEFYNAMKEEMY----MDVYGFGEIILEILTNGRL 639
+ + + ++Y +DV+ G I+L ++ GRL
Sbjct: 168 CGSPNYAAPEVINGKLYAGPEVDVWSCG-IVLYVMLVGRL 206
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 498 VRHKNLIRLLGFCYNRH-------QAYLLYDYLPNGNLSEKI-RTKRDWAAKYKIVLGVA 549
+RH+N+ LGF + Q +L+ DY +G+L + + R K+ L A
Sbjct: 93 LRHENI---LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTA 149
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGF 588
GL LH + PAI H DLK+ NI+ +N +A+ G
Sbjct: 150 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 193
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 27/225 (12%)
Query: 106 LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 165
LNL NS +L L L +S+N G L +L L+ F N +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 166 PAEISQLEHLKVLNLAGSYFSGPIPS-QFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVT 224
L L+ L L + IPS F SL L +LG LK +
Sbjct: 100 TQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRL-------------DLGELKRLE 145
Query: 225 HMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQ 284
+ I ++G + ++YL++ NL IP L+ L +LE L L N+L
Sbjct: 146 Y--ISEAAFEG--------LVNLRYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLI 193
Query: 285 VPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
P F +T+L+ L L +++ +F DLK+L L+L +N +
Sbjct: 194 RPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%)
Query: 247 VQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS 306
+YL++ ++ +L LE L L +N + F+ + +L +L+L DNRL+
Sbjct: 37 TRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 307 GPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEIL 346
++F L LR L L N + + ++PSL L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 498 VRHKNLIRLLGFCYNRH-------QAYLLYDYLPNGNLSEKI-RTKRDWAAKYKIVLGVA 549
+RH+N+ LGF + Q +L+ DY +G+L + + R K+ L A
Sbjct: 80 LRHENI---LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTA 136
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGF 588
GL LH + PAI H DLK+ NI+ +N +A+ G
Sbjct: 137 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 180
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 102 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN-S 160
E +DL+ + SF G F TSL LD+S F G I N L L+ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS-------FNGVITMSSNFLGLEQLEHLD 402
Query: 161 FSGSVPAEISQ------LEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP 214
F S ++S+ L +L L+++ ++ F SLE L +AGN
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN------- 455
Query: 215 AELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESL 274
+F + +P + + +LD++ L P ++L+ L+ L
Sbjct: 456 ----------------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 275 FLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE 311
+ NQL F R+T+L+ + L N P
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Query: 244 MSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV---------TT 294
+ ++++LD +NL K++S + SL RN + + +RV ++
Sbjct: 395 LEQLEHLDFQHSNL-----KQMSEFSVFLSL---RNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 295 LKSLDLSDNRLSGP-IPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 353
L+ L ++ N +P+ F +L+NL L L ++ P + L SL++L + +N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 354 SGSLPENL-GRNSKLRWVDVSTNNFNGSIP 382
S+P+ + R + L+ + + TN ++ S P
Sbjct: 507 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Query: 105 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS 164
+L+LS N F+ L LD+SR G QSL +L L N
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 165 VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELGMLKTV 223
S L L+ L + + G K+L+ L++A NL+ ++P L +
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 224 THMEIGYNFYQG 235
H+++ N Q
Sbjct: 152 EHLDLSSNKIQS 163
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 154 LDAFSNSFSGSVPAEISQLEHLKVLNLA----GSYFSGPIPSQFGSFKSLEFLHLAGNLL 209
L+ N F+ SV S L+ L+ L L ++F + ++ + SLE L ++ N L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--NMSSLETLDVSLNSL 415
Query: 210 NDQI-PAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNL 268
N +++ + + N G++ L +V+ LD+ N SIPK++++L
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN-NRIMSIPKDVTHL 472
Query: 269 TKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNE 328
L+ L + NQL F R+T+L+ + L DN P +R LS N+
Sbjct: 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINK 525
Query: 329 MSGTVPES 336
SG V S
Sbjct: 526 HSGVVRNS 533
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 106/272 (38%), Gaps = 55/272 (20%)
Query: 472 TVSVKKIEWGATRIKI---VSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 528
TV+VK ++ A+ ++ +SEF + V H ++I+L G C L+ +Y G+L
Sbjct: 55 TVAVKMLKENASPSELRDLLSEFNV-LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
Query: 529 SEKIRTKR------------------DWAAKYKIVLG--------VARGLCFLHHDCYPA 562
+R R D + + +G +++G+ +L
Sbjct: 114 RGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMK 170
Query: 563 IPHGDLKASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTES--GEFYN 613
+ H DL A NI+ E + +++FG + + G P K ES Y
Sbjct: 171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYT 230
Query: 614 AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE 673
DV+ FG ++ EI+T G G+ P + L + + + + +E
Sbjct: 231 TQS-----DVWSFGVLLWEIVTLG-----GNPYPGIPPERLFNLLKTGHRMERPDNCSEE 280
Query: 674 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
+ ++ L C + P RP + K L +
Sbjct: 281 MYRLM---LQCWKQEPDKRPVFADISKDLEKM 309
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 52/262 (19%)
Query: 473 VSVKKI-EWGATRIKIVSEFITRIGTVRHKN---LIRLLGFCYNRHQAYLLYDYLPNGNL 528
V++K + E + R +I EF+ ++ N ++RLLG ++ + + G+L
Sbjct: 52 VAIKTVNEAASMRERI--EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 109
Query: 529 SEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+R+ R + ++ +A G+ +L+ + + H DL A N +
Sbjct: 110 KSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFV---HRDLAARNCMVA 166
Query: 577 ENMEPHLAEFGFKYLTQLAD-------GSFPAKIAWTES---GEFYNAMKEEMYMDVYGF 626
E+ + +FG D G P + ES G F Y DV+ F
Sbjct: 167 EDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVRWMSPESLKDGVFTT------YSDVWSF 220
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE--NEVGSSSSLQDEIKLVLDVALLC 684
G ++ EI T L +P GL E E G + ++ ++ +C
Sbjct: 221 GVVLWEIAT----------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMC 270
Query: 685 TRSTPSDRPSMEEALKLLSGLK 706
+ P RPS L+++S +K
Sbjct: 271 WQYNPKMRPSF---LEIISSIK 289
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 110/263 (41%), Gaps = 11/263 (4%)
Query: 106 LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 165
LNL+HN + L SLD+ N S P Q L L VL+ N S
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 166 PAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTH 225
+ +L L+L + + F K+L L L+ N L+ L+ +
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149
Query: 226 MEIGYNFYQGNIPWQLGNM--SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAG 283
+ + N Q +L S ++ L+++ + P + +L LFL QL
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209
Query: 284 QVPWEFS---RVTTLKSLDLSDNRLSGPIPESFADLK--NLRLLSLMYNEMSGTVPESLV 338
+ + T++++L LS+++LS +F LK NL +L L YN ++ +S
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269
Query: 339 QLPSLEILFI-WNN---YFSGSL 357
LP LE F+ +NN FS SL
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSL 292
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 4/187 (2%)
Query: 212 QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL 271
Q+P +L +T + + +N + S++ LD+ +S P+ L L
Sbjct: 18 QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75
Query: 272 ESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG 331
+ L L N+L+ F+ T L L L N + F KNL L L +N +S
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Query: 332 TVPESLVQLPSLEILFIWNNYFSGSLPENLG--RNSKLRWVDVSTNNFNGSIPPDICSGG 389
T + VQL +L+ L + NN E L NS L+ +++S+N P + G
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 390 VLFKLIL 396
LF L L
Sbjct: 196 RLFGLFL 202
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 106/272 (38%), Gaps = 55/272 (20%)
Query: 472 TVSVKKIEWGATRIKI---VSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 528
TV+VK ++ A+ ++ +SEF + V H ++I+L G C L+ +Y G+L
Sbjct: 55 TVAVKMLKENASPSELRDLLSEFNV-LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
Query: 529 SEKIRTKR------------------DWAAKYKIVLG--------VARGLCFLHHDCYPA 562
+R R D + + +G +++G+ +L
Sbjct: 114 RGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMK 170
Query: 563 IPHGDLKASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTES--GEFYN 613
+ H DL A NI+ E + +++FG + + G P K ES Y
Sbjct: 171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYT 230
Query: 614 AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE 673
DV+ FG ++ EI+T G G+ P + L + + + + +E
Sbjct: 231 TQS-----DVWSFGVLLWEIVTLG-----GNPYPGIPPERLFNLLKTGHRMERPDNCSEE 280
Query: 674 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
+ ++ L C + P RP + K L +
Sbjct: 281 MYRLM---LQCWKQEPDKRPVFADISKDLEKM 309
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 498 VRHKNLIRLLGFCYN----RHQAYLLYDYLPNGNLSEKIRTKR-DWAAKYKIVLGVARGL 552
++H+NL++ + + +L+ + G+L++ ++ W + ++RGL
Sbjct: 66 MKHENLLQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKGNIITWNELCHVAETMSRGL 125
Query: 553 CFLHHDC--------YPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA 604
+LH D P+I H D K+ N++ ++ LA+FG + G P
Sbjct: 126 SYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLA--VRFEPGKPPGDTH 183
Query: 605 WTESGEFYNA---------MKEEMYM--DVYGFGEIILEILTNGRLTNAGSSLQNKPIDG 653
Y A + + ++ D+Y G ++ E+++ + + P+D
Sbjct: 184 GQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADG-------PVDE 236
Query: 654 LLGEMYNENEVGSSSSLQDEIKLVL 678
+ + E E+G SL++ ++V+
Sbjct: 237 YM--LPFEEEIGQHPSLEELQEVVV 259
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 39/233 (16%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTK----------RDWAAKYKIVLG 547
++H+++++ G C + ++++Y+ +G+L++ +R + AK ++ L
Sbjct: 74 LQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS 133
Query: 548 --------VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--- 596
+A G+ +L + H DL N + N+ + +FG D
Sbjct: 134 QMLHIASQIASGMVYLASQHF---VHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYR 190
Query: 597 --GSFPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID 652
G I W ES + E DV+ FG I+ EI T G+ L N +
Sbjct: 191 VGGHTMLPIRWMPPESIMYRKFTTES---DVWSFGVILWEIFTYGK--QPWFQLSNTEVI 245
Query: 653 GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
E + V + K V DV L C + P R +++E K+L L
Sbjct: 246 ----ECITQGRVLERPRVCP--KEVYDVMLGCWQREPQQRLNIKEIYKILHAL 292
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 498 VRHKNLIRLLGFCYNRH-------QAYLLYDYLPNGNLSEKI-RTKRDWAAKYKIVLGVA 549
+RH+N+ LGF + Q +L+ DY +G+L + + R K+ L A
Sbjct: 60 LRHENI---LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTA 116
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGF 588
GL LH + PAI H DLK+ NI+ +N +A+ G
Sbjct: 117 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 160
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 74/164 (45%), Gaps = 11/164 (6%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVL---GV 548
++ + ++H N++ L + L+++YL + +L + + + + + L +
Sbjct: 51 VSLLKDLKHANIVTLHDIIHTEKSLTLVFEYL-DKDLKQYLDDCGNIINMHNVKLFLFQL 109
Query: 549 ARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA--WT 606
RGL + H + H DLK N++ +E E LA+FG + ++ ++ W
Sbjct: 110 LRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWY 166
Query: 607 ESGE-FYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK 649
+ + +D++G G I E+ T GR GS+++ +
Sbjct: 167 RPPDILLGSTDYSTQIDMWGVGCIFYEMAT-GRPLFPGSTVEEQ 209
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 118 PVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKV 177
P EI T+L LD+ N+ S + L++L L +N S S L L+
Sbjct: 49 PKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106
Query: 178 LNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNI 237
L ++ ++ IP S SL L + N + L+ + +E+G N + N
Sbjct: 107 LYISKNHLVE-IPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NS 162
Query: 238 PWQLGNMS--EVQYLDIAGANLSGSIPKELS----------------------NLTKLES 273
++ G ++ YL I+ A L+G IPK+L +KL
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221
Query: 274 LFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 330
L L NQ+ S + TL+ L L +N+LS +P DLK L+++ L N ++
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 476 KKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA--YLLYDYLPNGNLS 529
K++++G A + +VSE + + ++H N++R +R Y++ +Y G+L+
Sbjct: 37 KELDYGSMTEAEKQMLVSE-VNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLA 95
Query: 530 EKIR--TKRDWAAKYKIVLGVARGLCFLHHDCYP------AIPHGDLKASNIVFDENMEP 581
I TK + VL V L +C+ + H DLK +N+ D
Sbjct: 96 SVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNV 155
Query: 582 HLAEFGFKYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGFGEIILEI 633
L +FG + D SF T S E N M D++ G ++ E+
Sbjct: 156 KLGDFGLARILN-HDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 498 VRHKNLIRLLGFCYNRH-------QAYLLYDYLPNGNLSEKI-RTKRDWAAKYKIVLGVA 549
+RH+N+ LGF + Q +L+ DY +G+L + + R K+ L A
Sbjct: 57 LRHENI---LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTA 113
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGF 588
GL LH + PAI H DLK+ NI+ +N +A+ G
Sbjct: 114 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 157
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 476 KKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA--YLLYDYLPNGNLS 529
K++++G A + +VSE + + ++H N++R +R Y++ +Y G+L+
Sbjct: 37 KELDYGSMTEAEKQMLVSE-VNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLA 95
Query: 530 EKIR--TKRDWAAKYKIVLGVARGLCFLHHDCYP------AIPHGDLKASNIVFDENMEP 581
I TK + VL V L +C+ + H DLK +N+ D
Sbjct: 96 SVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNV 155
Query: 582 HLAEFGFKYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGFGEIILEI 633
L +FG + D SF T S E N M D++ G ++ E+
Sbjct: 156 KLGDFGLARILN-HDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 469 TGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
TG V+VKK++ R +++ + + H N++ + + +++ ++L G
Sbjct: 69 TGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYSSYLVGDELWVVMEFLEGGA 128
Query: 528 LSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
L++ + T+ + + L V R L +LH+ + H D+K+ +I+ + L++F
Sbjct: 129 LTDIVTHTRMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDF 185
Query: 587 GF 588
GF
Sbjct: 186 GF 187
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 498 VRHKNLIRLLGFCYNRH-------QAYLLYDYLPNGNLSEKI-RTKRDWAAKYKIVLGVA 549
+RH+N+ LGF + Q +L+ DY +G+L + + R K+ L A
Sbjct: 54 LRHENI---LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTA 110
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGF 588
GL LH + PAI H DLK+ NI+ +N +A+ G
Sbjct: 111 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 154
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 6/181 (3%)
Query: 129 SLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGP 188
SLD+S N + +Q NL L SN + S L L+ L+L+ +Y S
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 89
Query: 189 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEI----GYNFYQGNIPWQLGNM 244
S F SL FL+L GN + E + +T ++I + + +
Sbjct: 90 SSSWFKPLSSLTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 245 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 304
+ ++ L+I ++L PK L ++ + L L Q + ++++ L+L D
Sbjct: 148 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 207
Query: 305 L 305
L
Sbjct: 208 L 208
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 295 LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 354
+KSLDLS+NR++ NL+ L L N ++ +S L SLE L + NY S
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 355 G 355
Sbjct: 88 N 88
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 8/209 (3%)
Query: 200 EFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG 259
L L N + E + +E+ N P N+ ++ L + L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK- 93
Query: 260 SIP----KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFAD 315
IP LSNLTKL+ + N++ + + F + LKSL++ DN L +F+
Sbjct: 94 LIPLGVFTGLSNLTKLD---ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 316 LKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTN 375
L +L L+L ++ E+L L L +L + + + + R +L+ +++S
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 376 NFNGSIPPDICSGGVLFKLILFSNNFTGI 404
+ ++ P+ G L L + N T +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAV 239
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 23/263 (8%)
Query: 81 NLSMKGL-SGALPGKPLRIF--FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNF 137
NL GL S L PL +F + L L++S N +L +L SL++ N+
Sbjct: 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 138 ---SGHFPGGIQSLRNLLVLDAFSNSFSGSVPAE-ISQLEHLKVLNLAGSYFSGPIPSQF 193
S G+ SL L S+P E +S L L VL L + F
Sbjct: 141 VYISHRAFSGLNSLEQL----TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 194 GSFKSLEFLHLAG-NLLNDQIPAELGMLK----TVTHMEIGYNFYQGNIPW-QLGNMSEV 247
L+ L ++ L+ P L L ++TH + +P+ + ++ +
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA------VPYLAVRHLVYL 250
Query: 248 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 307
++L+++ +S L L +L+ + L QLA P+ F + L+ L++S N+L+
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310
Query: 308 PIPESFADLKNLRLLSLMYNEMS 330
F + NL L L N ++
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 260 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 319
++P+ + T+L L L +N++ EF+ L+ L+L++N +S P +F +L NL
Sbjct: 25 AVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 320 RLLSLMYNEMS 330
R L L N +
Sbjct: 83 RTLGLRSNRLK 93
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 498 VRHKNLIRLLGFCYNRH-------QAYLLYDYLPNGNLSEKI-RTKRDWAAKYKIVLGVA 549
+RH+N+ LGF + Q +L+ DY +G+L + + R K+ L A
Sbjct: 55 LRHENI---LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTA 111
Query: 550 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGF 588
GL LH + PAI H DLK+ NI+ +N +A+ G
Sbjct: 112 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 155
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK IE GA + V I ++RH N++R ++ +Y G L E+I
Sbjct: 48 VAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERI 107
Query: 533 ----RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
R D A + L C C H DLK N + D + P L F
Sbjct: 108 CNAGRFSEDEARFFFQQLLSGVSYCHSMQIC-----HRDLKLENTLLDGSPAPRLKICDF 162
Query: 589 KY 590
Y
Sbjct: 163 GY 164
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP----------NGNLSEKIRTKRDWAAK 541
I + ++HKN++RL ++ + L++++ NG+L +I
Sbjct: 52 ICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKS------ 105
Query: 542 YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA 601
+ + +GL F H + H DLK N++ + N E LA FG + + A
Sbjct: 106 --FLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSA 160
Query: 602 KIA--WTESGE-FYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL--QNKPIDGLLG 656
++ W + + A +D++ G I E+ GR G+ + Q K I LLG
Sbjct: 161 EVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLG 220
Query: 657 EMYNEN 662
E
Sbjct: 221 TPTEEQ 226
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 289 FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFI 348
F + LK L+L+ N+++ E+F L NL++L+L YN + + LP + + +
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 349 WNNYFSGSLPENLGRNSKLRWVDVSTN-----NFNGSIPPDICSGGVLFKL 394
N+ + + KL+ +D+ N +F SIP SG L L
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 268 LTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADL-KNLRLLSLMY 326
L+ L+ L+L N L P FS +T L+ L L+ NRL+ S DL NL +L +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISR 535
Query: 327 NEMSGTVPESLVQLPSLEI 345
N++ P+ V L L+I
Sbjct: 536 NQLLAPNPDVFVSLSVLDI 554
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 293 TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY 352
++++ LDLS + F LK+L++L+L YN+++ E+ L +L++L + N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 353 FSGSLPENLGRNSKLRWVDVSTNN 376
N K+ ++D+ N+
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNH 349
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 19/184 (10%)
Query: 464 KAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLY 520
KA G V++K+I A I S I I ++ H N++ L+ ++ L++
Sbjct: 39 KAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98
Query: 521 DYLPNG---NLSEKIRTKRDWAAK---YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 574
+++ L E +D K Y+++ GVA C H I H DLK N++
Sbjct: 99 EFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAH--CHQHR-----ILHRDLKPQNLL 151
Query: 575 FDENMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGE-FYNAMKEEMYMDVYGFGEIIL 631
+ + LA+FG + S+ ++ W + + + K +D++ G I
Sbjct: 152 INSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFA 211
Query: 632 EILT 635
E++T
Sbjct: 212 EMIT 215
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 271 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 330
+ + L N+L F + +LK+L L NR++ +SF L ++RLLSL N+++
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142
Query: 331 GTVPESLVQLPSLEILFIWNNYFS 354
P + L SL L + N F+
Sbjct: 143 TVAPGAFDTLHSLSTLNLLANPFN 166
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 19/184 (10%)
Query: 464 KAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLY 520
KA G V++K+I A I S I I ++ H N++ L+ ++ L++
Sbjct: 39 KAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98
Query: 521 DYLPNG---NLSEKIRTKRDWAAK---YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 574
+++ L E +D K Y+++ GVA C H I H DLK N++
Sbjct: 99 EFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAH--CHQHR-----ILHRDLKPQNLL 151
Query: 575 FDENMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGE-FYNAMKEEMYMDVYGFGEIIL 631
+ + LA+FG + S+ ++ W + + + K +D++ G I
Sbjct: 152 INSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFA 211
Query: 632 EILT 635
E++T
Sbjct: 212 EMIT 215
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 459 SAAGCKAVL--PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA 516
S + CK + T + +VK I+ E + R G +H N+I L +
Sbjct: 39 SYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYG--QHPNIITLKDVYDDGKHV 96
Query: 517 YLLYDYLPNGNLSEKIRTKRDWAAKYK--IVLGVARGLCFLHHDCYPAIPHGDLKASNIV 574
YL+ + + G L +KI ++ ++ + ++ + + + +LH + H DLK SNI+
Sbjct: 97 YLVTELMRGGELLDKILRQKFFSEREASFVLHTIGKTVEYLHSQ---GVVHRDLKPSNIL 153
Query: 575 F-DENMEP---HLAEFGF 588
+ DE+ P + +FGF
Sbjct: 154 YVDESGNPECLRICDFGF 171
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI 603
+V + +GL ++H I H DLK N+ +E+ E + +FG L + AD +
Sbjct: 133 LVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFG---LARQADSEMXGXV 186
Query: 604 A--WTESGE-FYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN 648
W + E N M+ +D++ G I+ E++T L L
Sbjct: 187 VTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQ 234
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 469 TGITVSVKKIEWGATR----IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
TG V+VK + R + + I + RH ++I+L +++ +Y+
Sbjct: 35 TGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVS 94
Query: 525 NGNLSEKI----RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G L + I R + A + + A C H + H DLK N++ D +M
Sbjct: 95 GGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRH-----MVVHRDLKPENVLLDAHMN 149
Query: 581 PHLAEFGFKYLTQLADGSF 599
+A+FG ++DG F
Sbjct: 150 AKIADFGLS--NMMSDGEF 166
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 469 TGITVSVKKIEWGATR----IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
TG V+VK + R + + I + RH ++I+L +++ +Y+
Sbjct: 35 TGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVS 94
Query: 525 NGNLSEKI----RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
G L + I R + A + + A C H + H DLK N++ D +M
Sbjct: 95 GGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRH-----MVVHRDLKPENVLLDAHMN 149
Query: 581 PHLAEFGFKYLTQLADGSF 599
+A+FG ++DG F
Sbjct: 150 AKIADFGLS--NMMSDGEF 166
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 6/181 (3%)
Query: 129 SLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGP 188
SLD+S N + +Q NL L SN + S L L+ L+L+ +Y S
Sbjct: 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
Query: 189 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEI----GYNFYQGNIPWQLGNM 244
S F SL FL+L GN + E + +T ++I + + +
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 245 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 304
+ ++ L+I ++L PK L ++ + L L Q + ++++ L+L D
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233
Query: 305 L 305
L
Sbjct: 234 L 234
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 295 LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 354
+KSLDLS+NR++ NL+ L L N ++ +S L SLE L + NY S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 40/236 (16%)
Query: 495 IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYK----------I 544
I ++++ + G N + Y++Y+Y+ N ++ + Y I
Sbjct: 97 ITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCI 156
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-FKYLTQL----ADGSF 599
+ V ++H++ I H D+K SNI+ D+N L++FG +Y+ + G++
Sbjct: 157 IKSVLNSFSYIHNE--KNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTY 214
Query: 600 ---PAKIAWTESGEFYNAMKEE----------MYMDVYGFGEII--LEILTNGRLTNAGS 644
P + ES YN K + M+ +V F I +E+ N R N
Sbjct: 215 EFMPPEFFSNESS--YNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEY 272
Query: 645 SLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 700
L + L + N+ S++ L +E +D L R P++R + E+ALK
Sbjct: 273 PLDR---NHFLYPLTNKKSTCSNNFLSNE---DIDFLKLFLRKNPAERITSEDALK 322
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 459 SAAGCKAVL--PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA 516
S + CK + T + +VK I+ E + R G +H N+I L +
Sbjct: 39 SYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYG--QHPNIITLKDVYDDGKHV 96
Query: 517 YLLYDYLPNGNLSEKIRTKRDWAAKYK--IVLGVARGLCFLHHDCYPAIPHGDLKASNIV 574
YL+ + + G L +KI ++ ++ + ++ + + + +LH + H DLK SNI+
Sbjct: 97 YLVTELMRGGELLDKILRQKFFSEREASFVLHTIGKTVEYLHSQ---GVVHRDLKPSNIL 153
Query: 575 F-DENMEP---HLAEFGF 588
+ DE+ P + +FGF
Sbjct: 154 YVDESGNPECLRICDFGF 171
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 470 GITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYD 521
GI V+VKK+ T K + + V HKN+I LL Q L
Sbjct: 47 GINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM 106
Query: 522 YLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L + NL + I + D ++ + + LC + H I H DLK SNIV +
Sbjct: 107 ELMDANLCQVIHMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTL 163
Query: 582 HLAEFGF 588
+ +FG
Sbjct: 164 KILDFGL 170
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 476 KKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA--YLLYDYLPNGNLS 529
K++++G A + +VSE + + ++H N++R +R Y++ +Y G+L+
Sbjct: 37 KELDYGSMTEAEKQMLVSE-VNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLA 95
Query: 530 EKIR--TKRDWAAKYKIVLGVARGLCFLHHDCYP------AIPHGDLKASNIVFDENMEP 581
I TK + VL V L +C+ + H DLK +N+ D
Sbjct: 96 SVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNV 155
Query: 582 HLAEFGFKYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGFGEIILEI 633
L +FG + D F + T S E N M D++ G ++ E+
Sbjct: 156 KLGDFGLARILN-HDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG + K IE + + + ++I I T H +++LLG Y+ + +++ ++ P
Sbjct: 35 TGALAAAKVIETKSE--EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPG 92
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR----GLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
G + + I + D + V R L FLH I H DLKA N++ +
Sbjct: 93 GAV-DAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDI 148
Query: 582 HLAEFG 587
LA+FG
Sbjct: 149 RLADFG 154
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + A LKNL +L L
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 204
Query: 325 MYNE 328
E
Sbjct: 205 FSQE 208
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + A LKNL +L L
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 207
Query: 325 MYNE 328
E
Sbjct: 208 FSQE 211
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN---GNLSEKIRTKRDWAAKYKIVLGV 548
I+ + +RH ++I+L ++ + ++ +Y N + ++ + A ++ +
Sbjct: 65 ISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIIS 124
Query: 549 ARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF 599
A C H I H DLK N++ DE++ +A+FG + + DG+F
Sbjct: 125 AVEYCHRH-----KIVHRDLKPENLLLDEHLNVKIADFGLSNI--MTDGNF 168
>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
Length = 364
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 470 GITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYD 521
GI V+VKK+ T K + + V HKN+I LL Q L
Sbjct: 49 GINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM 108
Query: 522 YLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
L + NL + I + D ++ + + LC + H I H DLK SNIV +
Sbjct: 109 ELMDANLCQVIHMELD---HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTL 165
Query: 582 HLAEFGF 588
+ +FG
Sbjct: 166 KILDFGL 172
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP----------NGNLSEKIRTKRDWAAK 541
I + ++HKN++RL ++ + L++++ NG+L +I
Sbjct: 52 ICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKS------ 105
Query: 542 YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA 601
+ + +GL F H + H DLK N++ + N E LA+FG + + A
Sbjct: 106 --FLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSA 160
Query: 602 KIA--WTESGE-FYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL--QNKPIDGLLG 656
++ W + + A +D++ G I E+ R G+ + Q K I LLG
Sbjct: 161 EVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAARPLFPGNDVDDQLKRIFRLLG 220
Query: 657 EMYNEN 662
E
Sbjct: 221 TPTEEQ 226
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN---GNLSEKIRTKRDWAAKYKIVLGV 548
I+ + +RH ++I+L ++ + ++ +Y N + ++ + A ++ +
Sbjct: 64 ISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIIS 123
Query: 549 ARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF 599
A C H I H DLK N++ DE++ +A+FG + + DG+F
Sbjct: 124 AVEYCHRH-----KIVHRDLKPENLLLDEHLNVKIADFGLSNI--MTDGNF 167
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
TG + K IE + + + ++I I T H +++LLG Y+ + +++ ++ P
Sbjct: 43 TGALAAAKVIETKSE--EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPG 100
Query: 526 GNLSEKIRTKRDWAAKYKIVLGVAR----GLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
G + + I + D + V R L FLH I H DLKA N++ +
Sbjct: 101 GAV-DAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDI 156
Query: 582 HLAEFG 587
LA+FG
Sbjct: 157 RLADFG 162
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN---GNLSEKIRTKRDWAAKYKIVLGV 548
I+ + +RH ++I+L ++ + ++ +Y N + ++ + A ++ +
Sbjct: 59 ISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIIS 118
Query: 549 ARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF 599
A C H I H DLK N++ DE++ +A+FG + + DG+F
Sbjct: 119 AVEYCHRH-----KIVHRDLKPENLLLDEHLNVKIADFGLSNI--MTDGNF 162
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN---GNLSEKIRTKRDWAAKYKIVLGV 548
I+ + +RH ++I+L ++ + ++ +Y N + ++ + A ++ +
Sbjct: 55 ISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIIS 114
Query: 549 ARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF 599
A C H I H DLK N++ DE++ +A+FG + + DG+F
Sbjct: 115 AVEYCHRH-----KIVHRDLKPENLLLDEHLNVKIADFGLSNI--MTDGNF 158
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 528
TG V++K++ + +I+ E I+ + ++++ G + +++ +Y G++
Sbjct: 53 TGQIVAIKQVPVESDLQEIIKE-ISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSV 111
Query: 529 SEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 585
S+ IR + + +I +GL +LH + H D+KA NI+ + LA+
Sbjct: 112 SDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLAD 168
Query: 586 FG 587
FG
Sbjct: 169 FG 170
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 129 SLDISRNNFSGHFPGGIQSLRNLLVLDAFS---NSFSGSVPAEISQLEHLKVLNLAGSYF 185
SLD+S N + G +++ NL VL S N+ G + LEHL +L+ ++
Sbjct: 56 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL---DLSDNHL 112
Query: 186 SGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE-LGMLKTVTHMEIGYNFYQGNIPWQLGNM 244
S S FG SL++L+L GN P + LG+ ++ GN+
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGN------PYQTLGVTSLFPNLTNLQTLRIGNVE----TF 162
Query: 245 SEVQYLDIAG 254
SE++ +D AG
Sbjct: 163 SEIRRIDFAG 172
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + A LKNL +L L
Sbjct: 150 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 205
Query: 325 MYNE 328
E
Sbjct: 206 FSQE 209
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ+ VP +R+T L++L LS N +S + LKNL +L L
Sbjct: 150 LSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHISD--LRALRGLKNLDVLEL 205
Query: 325 MYNE 328
E
Sbjct: 206 FSQE 209
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + A LKNL +L L
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 225
Query: 325 MYNE 328
E
Sbjct: 226 FSQE 229
>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
Length = 362
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK IE G + V I ++RH N++R ++ +Y G L E+I
Sbjct: 47 VAVKYIERGEKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERI 106
Query: 533 ----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
R D A + +++ GV+ C C H DLK N + D + P L
Sbjct: 107 CNAGRFSEDEARFFFQQLISGVS--YCHAMQVC-----HRDLKLENTLLDGSPAPRLKIC 159
Query: 587 GFKY 590
F Y
Sbjct: 160 AFGY 163
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + A LKNL +L L
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 207
Query: 325 MYNE 328
E
Sbjct: 208 FSQE 211
>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
Length = 362
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK IE G + V I ++RH N++R ++ +Y G L E+I
Sbjct: 47 VAVKYIERGEKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERI 106
Query: 533 ----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
R D A + +++ GV+ C C H DLK N + D + P L
Sbjct: 107 CNAGRFSEDEARFFFQQLISGVS--YCHAMQVC-----HRDLKLENTLLDGSPAPRLKIC 159
Query: 587 GFKY 590
F Y
Sbjct: 160 AFGY 163
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + A LKNL +L L
Sbjct: 172 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 227
Query: 325 MYNE 328
E
Sbjct: 228 FSQE 231
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 463 CKAVLPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYL 518
CK + TG +VK I + K E + R + + H N+++L F ++ YL
Sbjct: 68 CKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 126
Query: 519 LYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+ + G L ++I +++ ++ +I+ V G+ ++H + I H DLK N++ +
Sbjct: 127 VGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLE 183
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 463 CKAVLPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYL 518
CK + TG +VK I + K E + R + + H N+++L F ++ YL
Sbjct: 45 CKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 103
Query: 519 LYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+ + G L ++I +++ ++ +I+ V G+ ++H + I H DLK N++ +
Sbjct: 104 VGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLE 160
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 515 QAYLLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL 568
Q +L+ ++ G++++ I+ K +W A I + RGL LH + H D+
Sbjct: 101 QLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAY--ICREILRGLSHLHQH---KVIHRDI 155
Query: 569 KASNIVFDENMEPHLAEFG 587
K N++ EN E L +FG
Sbjct: 156 KGQNVLLTENAEVKLVDFG 174
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 249 YLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA--GQVPWEFSRVTTLKSLDLSDNRLS 306
+LD + L+ ++ + +LT+LE+L L NQL ++ +++ +L+ LD+S N +S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 307 GPIPESFADL---KNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGR 363
E D K+L L++ N ++ T+ L P +++L + +N S+P+ + +
Sbjct: 388 --YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVK 442
Query: 364 NSKLRWVDVSTNNFNGSIPPDI 385
L+ ++V++N S+P I
Sbjct: 443 LEALQELNVASNQL-KSVPDGI 463
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 29/171 (16%)
Query: 166 PAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND--QIPAELGMLKTV 223
P++IS HL + + + + + G LE L L N L + +I +K++
Sbjct: 320 PSKISPFLHL---DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 224 THMEIG-----YNFYQGNIPWQLG----NMS--------------EVQYLDIAGANLSGS 260
++I Y+ +G+ W NMS ++ LD+ +N S
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDL-HSNKIKS 435
Query: 261 IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE 311
IPK++ L L+ L + NQL F R+T+L+ + L N P
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 130 LDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPI 189
+D S+N H P + + +L+ N S ++I L L++L ++ +
Sbjct: 5 VDRSKNGL-IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 190 PSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG-NIPWQLGNMSEVQ 248
S F + LE+L L+ N L + + H+++ +N + I + GNMS+++
Sbjct: 62 ISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 249 YLDIAGANLSGS 260
+L ++ +L S
Sbjct: 119 FLGLSTTHLEKS 130
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + A LKNL +L L
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 225
Query: 325 MYNE 328
E
Sbjct: 226 FSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + A LKNL +L L
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 225
Query: 325 MYNE 328
E
Sbjct: 226 FSQE 229
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 463 CKAVLPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYL 518
CK + TG +VK I + K E + R + + H N+++L F ++ YL
Sbjct: 69 CKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 127
Query: 519 LYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+ + G L ++I +++ ++ +I+ V G+ ++H + I H DLK N++ +
Sbjct: 128 VGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLE 184
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 126 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS---NSFSGSVPAEISQLEHLKVLNLAG 182
++ SLD+S N + G +++ NL VL S N+ G + LEHL +L+
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL---DLSD 83
Query: 183 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE-LGMLKTVTHMEIGYNFYQGNIPWQL 241
++ S S FG SL++L+L GN P + LG+ ++ GN+
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGN------PYQTLGVTSLFPNLTNLQTLRIGNVE--- 134
Query: 242 GNMSEVQYLDIAG 254
SE++ +D AG
Sbjct: 135 -TFSEIRRIDFAG 146
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 268 LTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN 327
LT L L L +N L F + L+ LDLS N + +SF L NL+ L+L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 328 EMSGTVPESLV-QLPSLEILFIWNNYFSGSLPENLGRNSKL-RWVDVSTNNFNGSIPPDI 385
++ +VP+ + +L SL+ +++ N + S P R L RW++ ++ GS
Sbjct: 382 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP----RIDYLSRWLNKNSQKEQGSAK--- 433
Query: 386 CSG 388
CSG
Sbjct: 434 CSG 436
>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 111
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NLS+ I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 112 DANLSQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKIL 168
Query: 585 EFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 169 DFG---LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 224
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLLYDYL 523
V++KK+ T K + + V HKN+I LL F + Y++ + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVME-L 110
Query: 524 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
+ NLS+ I+ + D ++ + G+ LH I H DLK SNIV + +
Sbjct: 111 MDANLSQVIQMELDHERMSYLLYQMLVGIKHLHS---AGIIHRDLKPSNIVVKSDATLKI 167
Query: 584 AEFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 168 LDFG---LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVL 224
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 262 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRL 321
P +L L+ L+ N+L F ++T L LDL+DN L +F +LK+L
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109
Query: 322 LSLMYN 327
+ L N
Sbjct: 110 IYLYNN 115
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 251 DIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIP 310
+I A++ IP T + L+L NQ+ P F + L+ L + N+L+
Sbjct: 21 NIRLASVPAGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74
Query: 311 ESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
F L L L L N + + L SL ++++NN
Sbjct: 75 GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------HQAYLLYDYL 523
V++KK+ T K + + V HKN+I LL + Y++ + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVME-L 110
Query: 524 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
+ NLS+ I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 111 MDANLSQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKI 167
Query: 584 AEFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 168 LDFG---LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 224
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + A LKNL +L L
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 202
Query: 325 MYNE 328
E
Sbjct: 203 FSQE 206
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLG-FCYNR-- 513
A A+L V++KK+ T K + + V HKN+I LL F +
Sbjct: 41 VAAYDAILERN--VAIKKLSRPFQNQTHAKRAYRELVLMKVVNHKNIIGLLNVFTPQKSL 98
Query: 514 ---HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKA 570
Y++ + L + NLS+ I+ + D ++ + G+ LH I H DLK
Sbjct: 99 EEFQDVYIVME-LMDANLSQVIQMELDHERMSYLLYQMLVGIKHLHS---AGIIHRDLKP 154
Query: 571 SNIVFDENMEPHLAEFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGF 626
SNIV + + +FG L + A SF P + + + E M + +D++
Sbjct: 155 SNIVVKSDATLKILDFG---LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSV 211
Query: 627 GEIILEILTNGRL 639
G I+ E++ G L
Sbjct: 212 GVIMGEMIKGGVL 224
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK IE G V I ++RH N++R ++ +Y G L E+I
Sbjct: 47 VAVKYIERGEKIAANVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERI 106
Query: 533 ----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
R D A + +++ GV+ C C H DLK N + D + P L
Sbjct: 107 CNAGRFSEDEARFFFQQLISGVS--YCHAMQVC-----HRDLKLENTLLDGSPAPRLKIC 159
Query: 587 GFKY 590
F Y
Sbjct: 160 DFGY 163
>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6
pdb|3UDB|B Chain B, Crystal Structure Of Snrk2.6
pdb|3UDB|C Chain C, Crystal Structure Of Snrk2.6
pdb|3UDB|D Chain D, Crystal Structure Of Snrk2.6
pdb|3UDB|E Chain E, Crystal Structure Of Snrk2.6
pdb|3UDB|F Chain F, Crystal Structure Of Snrk2.6
Length = 317
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK IE G + V I ++RH N++R ++ +Y G L E+I
Sbjct: 47 VAVKYIERGEKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERI 106
Query: 533 ----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL--A 584
R D A + +++ GV+ + H DLK N + D + P L A
Sbjct: 107 CNAGRFSEDEARFFFQQLISGVSYAHAM-------QVAHRDLKLENTLLDGSPAPRLKIA 159
Query: 585 EFGF 588
+FG+
Sbjct: 160 DFGY 163
>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|B Chain B, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|C Chain C, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|D Chain D, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|E Chain E, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|F Chain F, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|G Chain G, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|H Chain H, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|I Chain I, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|J Chain J, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|K Chain K, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|L Chain L, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|M Chain M, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|N Chain N, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|O Chain O, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|P Chain P, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|Q Chain Q, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|R Chain R, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|S Chain S, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|T Chain T, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|U Chain U, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|V Chain V, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|W Chain W, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|X Chain X, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
Length = 305
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 514 HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCY-----PAIPHGDL 568
H+ LYD+L L + ++ + A GL LH + + PAI H D
Sbjct: 88 HEHGSLYDFLQRQTLEPHL--------ALRLAVSAACGLAHLHVEIFGTQGKPAIAHRDF 139
Query: 569 KASNIVFDENMEPHLAEFGFKYL 591
K+ N++ N++ +A+ G +
Sbjct: 140 KSRNVLVKSNLQCCIADLGLAVM 162
>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 111
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NLS+ I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 112 DANLSQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 168
Query: 585 EFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 169 DFG---LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 224
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 26/194 (13%)
Query: 517 YLLYDYLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASN 572
++ ++ G L + I +R D ++ + +G+ ++H + H DLK SN
Sbjct: 110 FIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS---KKLIHRDLKPSN 166
Query: 573 IVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWT---ESGEFYNAMKEEMYMDVYGFGEI 629
I + + + +FG +T L + + T S E ++ +D+Y G I
Sbjct: 167 IFLVDTKQVKIGDFGL--VTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLI 224
Query: 630 ILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTP 689
+ E+L S DG++ +++++ E + LQ LL + P
Sbjct: 225 LAELLHVCDTAFETSKFFTDLRDGIISDIFDKKE---KTLLQ---------KLLSKK--P 270
Query: 690 SDRPSMEEALKLLS 703
DRP+ E L+ L+
Sbjct: 271 EDRPNTSEILRTLT 284
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 39 PSGLIMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 97
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + + K+ + V RGL +L I H D+K SNI+ + E
Sbjct: 98 GGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIK 155
Query: 583 LAEFG 587
L +FG
Sbjct: 156 LCDFG 160
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR---------------TKRDWAAKY 542
++H+++++ G C ++++Y+ +G+L++ +R T+ +
Sbjct: 72 LQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQML 131
Query: 543 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-----G 597
I +A G+ +L + H DL N + EN+ + +FG D G
Sbjct: 132 HIAQQIAAGMVYLASQHF---VHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGG 188
Query: 598 SFPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 638
I W ES + E DV+ G ++ EI T G+
Sbjct: 189 HTMLPIRWMPPESIMYRKFTTES---DVWSLGVVLWEIFTYGK 228
>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map
Kinase Jnk1
Length = 370
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLLYDYL 523
V++KK+ T K + + V HKN+I LL F + Y++ + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVME-L 110
Query: 524 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
+ NLS+ I+ + D ++ + G+ LH I H DLK SNIV + +
Sbjct: 111 MDANLSQVIQMELDHERMSYLLYQMLVGIKHLHS---AGIIHRDLKPSNIVVKSDATLKI 167
Query: 584 AEFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 168 LDFG---LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 224
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 473 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 532
V+VK IE G + V I ++RH N++R ++ +Y G L E+I
Sbjct: 46 VAVKYIERGEKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERI 105
Query: 533 ----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
R D A + +++ GV+ C C H DLK N + D + P L
Sbjct: 106 CNAGRFSEDEARFFFQQLISGVS--YCHAMQVC-----HRDLKLENTLLDGSPAPRLKIC 158
Query: 587 GFKY 590
F Y
Sbjct: 159 DFGY 162
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 99/269 (36%), Gaps = 40/269 (14%)
Query: 459 SAAGCKAVLPTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA 516
AA C P V++K+I E T + + + I + H N++ + +
Sbjct: 27 QAAYCA---PKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDEL 83
Query: 517 YLLYDYLPNGNLSEKIRT----------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHG 566
+L+ L G++ + I+ D + I+ V GL +LH + H
Sbjct: 84 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHR 140
Query: 567 DLKASNIVFDENMEPHLAEFGFKYLTQLADG----------SFPAKIAWTESGEFYNAMK 616
D+KA NI+ E+ +A+FG LA G +F W
Sbjct: 141 DVKAGNILLGEDGSVQIADFGVSAF--LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRG 198
Query: 617 EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN-----ENEVGSSSSLQ 671
+ D++ FG +E+ T A + P+ L+ + N E V L+
Sbjct: 199 YDFKADIWSFGITAIEL-----ATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLK 253
Query: 672 DEIKLVLDVALLCTRSTPSDRPSMEEALK 700
K + LC + P RP+ E L+
Sbjct: 254 KYGKSFRKMISLCLQKDPEKRPTAAELLR 282
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 259 GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKN 318
S+P + T++ L L+ NQ+ P F +T L L+L+ N+L+ F L
Sbjct: 32 ASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 319 LRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
L L+L N++ L SL ++++NN
Sbjct: 90 LTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 265 LSNLTKLESLFLFRNQLA--GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLL 322
L +LTKLE L + RN+L +P L L L +N L +S LKNL +L
Sbjct: 81 LKDLTKLEELSVNRNRLKNLNGIP-----SACLSRLFLDNNELRD--TDSLIHLKNLEIL 133
Query: 323 SLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVS 373
S+ N++ V L L LE+L + N + + L R K+ W+D++
Sbjct: 134 SIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 269 TKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG--PIPESFADLKNLRLLSLMY 326
T L+ L L NQ++ P +T L+ L ++ NRL IP + L L L
Sbjct: 63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC-----LSRLFLDN 115
Query: 327 NEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGS 380
NE+ T +SL+ L +LEIL I NN + LG SKL +D+ N +
Sbjct: 116 NELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT 165
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 99 FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 158
FF L +L+LSHN S P++ +LT L L ++RN + G + + L LD +
Sbjct: 61 FFTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRNRLK-NLNGIPSACLSRLFLD--N 115
Query: 159 NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN 207
N + + L++L++L++ + + G LE L L GN
Sbjct: 116 NELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN 160
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 463 CKAVLPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYL 518
CK + TG +VK I + K E + R + + H N+++L F ++ YL
Sbjct: 51 CKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 109
Query: 519 LYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+ + G L ++I +++ ++ +I+ V G+ ++H + I H DLK N++ +
Sbjct: 110 VGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLE 166
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 268 LTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN 327
LT+L L L +NQ+ F ++T L L L +N+L F L L+ L+L N
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 328 EMSGTVPESLV-QLPSLEILFIWNNYFSGSLPENLGRNSKL-RWVDVSTNNFNGSIPPDI 385
++ +VP+ + +L SL+ +++ N + S P R L RW++ ++ GS
Sbjct: 111 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP----RIDYLSRWLNKNSQKEQGSAK--- 162
Query: 386 CSG 388
CSG
Sbjct: 163 CSG 165
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 218 GMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLF 277
G+ + T +E+ N Q ++++ L ++ + LTKL L+L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 278 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFAD-LKNLRLLSLMYNEMSGTVPE 335
N+L F ++T LK L L N+L +P+ D L +L+ + L N + P
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 531 KIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI-VFDENMEPHLAEFGFK 589
KI+ R W + + +GL FLH P I H DLK NI + + + G
Sbjct: 127 KIKVLRSWCRQ------ILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLG-- 177
Query: 590 YLTQLADGSFPAKIAWT---ESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL 646
L L SF + T + E Y +E +DVY FG LE T+ S
Sbjct: 178 -LATLKRASFAKAVIGTPEFXAPEXYEEKYDES-VDVYAFGXCXLEXATS---EYPYSEC 232
Query: 647 QNKPIDGLLGEMYNENEVGSSSSLQDEIKL--VLDVALLCTRSTPSDRPSMEEAL 699
QN ++Y G + D++ + V ++ C R +R S+++ L
Sbjct: 233 QN------AAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 281
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 25/216 (11%)
Query: 425 HWKMISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATR 484
++ + FLG QF R N+ + A + G ++ GI + +
Sbjct: 11 RYEKLDFLGEGQFATVYKARDKNTNQI--VAIKKIKLGHRSEAKDGINRTALR------E 62
Query: 485 IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKI 544
IK++ E + H N+I LL ++ L++D++ +L I+ I
Sbjct: 63 IKLLQE-------LSHPNIIGLLDAFGHKSNISLVFDFM-ETDLEVIIKDNSLVLTPSHI 114
Query: 545 ---VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA 601
+L +GL +LH I H DLK +N++ DEN LA+FG + ++
Sbjct: 115 KAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYXH 171
Query: 602 KIA--WTESGE-FYNAMKEEMYMDVYGFGEIILEIL 634
++ W + E + A + +D++ G I+ E+L
Sbjct: 172 QVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELL 207
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 99/269 (36%), Gaps = 40/269 (14%)
Query: 459 SAAGCKAVLPTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA 516
AA C P V++K+I E T + + + I + H N++ + +
Sbjct: 32 QAAYCA---PKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDEL 88
Query: 517 YLLYDYLPNGNLSEKIRT----------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHG 566
+L+ L G++ + I+ D + I+ V GL +LH + H
Sbjct: 89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHR 145
Query: 567 DLKASNIVFDENMEPHLAEFGFKYLTQLADG----------SFPAKIAWTESGEFYNAMK 616
D+KA NI+ E+ +A+FG LA G +F W
Sbjct: 146 DVKAGNILLGEDGSVQIADFGVSAF--LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRG 203
Query: 617 EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN-----ENEVGSSSSLQ 671
+ D++ FG +E+ T A + P+ L+ + N E V L+
Sbjct: 204 YDFKADIWSFGITAIEL-----ATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLK 258
Query: 672 DEIKLVLDVALLCTRSTPSDRPSMEEALK 700
K + LC + P RP+ E L+
Sbjct: 259 KYGKSFRKMISLCLQKDPEKRPTAAELLR 287
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 468 PTGITVSVKKIE---------WGATRIKIVSEFITRIGTVRHKNLIRLLGFCY-----NR 513
PTG V++KKIE IKI+ F +H+N+I + N
Sbjct: 34 PTGEIVAIKKIEPFDKPLFALRTLREIKILKHF-------KHENIITIFNIQRPDSFENF 86
Query: 514 HQAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
++ Y++ + + +L I T+ D +Y + R + LH + H DLK S
Sbjct: 87 NEVYIIQELM-QTDLHRVISTQMLSDDHIQY-FIYQTLRAVKVLHGS---NVIHRDLKPS 141
Query: 572 NIVFDENMEPHLAEFGFKYLTQ--LADGSFPA----------KIAWTESGE-FYNAMKEE 618
N++ + N + + +FG + AD S P W + E + K
Sbjct: 142 NLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYS 201
Query: 619 MYMDVYGFGEIILEILTNGRLTNAGSSLQNK--PIDGLLGEMYNENEVGSSSS 669
MDV+ G I+ E+ R G +++ I G++G +++N++ S
Sbjct: 202 RAMDVWSCGCILAELFLR-RPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIES 253
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 468 PTGITVSVKKIE---------WGATRIKIVSEFITRIGTVRHKNLIRLLGFCY-----NR 513
PTG V++KKIE IKI+ F +H+N+I + N
Sbjct: 34 PTGEIVAIKKIEPFDKPLFALRTLREIKILKHF-------KHENIITIFNIQRPDSFENF 86
Query: 514 HQAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
++ Y++ + + +L I T+ D +Y + R + LH + H DLK S
Sbjct: 87 NEVYIIQELM-QTDLHRVISTQMLSDDHIQY-FIYQTLRAVKVLHGS---NVIHRDLKPS 141
Query: 572 NIVFDENMEPHLAEFGFKYLTQ--LADGSFPA----------KIAWTESGE-FYNAMKEE 618
N++ + N + + +FG + AD S P W + E + K
Sbjct: 142 NLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEXVATRWYRAPEVMLTSAKYS 201
Query: 619 MYMDVYGFGEIILEILTNGRLTNAGSSLQNK--PIDGLLGEMYNENEVGSSSS 669
MDV+ G I+ E+ R G +++ I G++G +++N++ S
Sbjct: 202 RAMDVWSCGCILAELFLR-RPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIES 253
>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A
Natural Jnk1 Inhibitor
Length = 379
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 111
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 112 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 168
Query: 585 EFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 169 DFG---LARTAGTSFMMTPEVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 224
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI 603
+V + +GL ++H + H DLK N+ +E+ E + +FG L + AD +
Sbjct: 131 LVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFG---LARHADAEMTGYV 184
Query: 604 A--WTESGE-FYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL----QNKPIDGLLG 656
W + E + M +D++ G I+ E+LT L L Q + G+ G
Sbjct: 185 VTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPG 244
Query: 657 EMYNE--NEVGSSSSLQDEIKL-VLDVALLCTRSTPSDRPSMEEALKL 701
+ + N+ + S +Q + D L R++P +E+ L+L
Sbjct: 245 TEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLEL 292
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 468 PTGITVSVKKIE---------WGATRIKIVSEFITRIGTVRHKNLIRLLGFCY-----NR 513
PTG V++KKIE IKI+ F +H+N+I + N
Sbjct: 34 PTGEIVAIKKIEPFDKPLFALRTLREIKILKHF-------KHENIITIFNIQRPDSFENF 86
Query: 514 HQAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
++ Y++ + + +L I T+ D +Y + R + LH + H DLK S
Sbjct: 87 NEVYIIQELM-QTDLHRVISTQMLSDDHIQY-FIYQTLRAVKVLHGS---NVIHRDLKPS 141
Query: 572 NIVFDENMEPHLAEFGFKYLTQ--LADGSFPA----------KIAWTESGE-FYNAMKEE 618
N++ + N + + +FG + AD S P W + E + K
Sbjct: 142 NLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEYVATRWYRAPEVMLTSAKYS 201
Query: 619 MYMDVYGFGEIILEILTNGRLTNAGSSLQNK--PIDGLLGEMYNENEVGSSSS 669
MDV+ G I+ E+ R G +++ I G++G +++N++ S
Sbjct: 202 RAMDVWSCGCILAELFLR-RPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIES 253
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYK--IVLGVA 549
I + ++H+N++ L + YL+ + G L ++I + + K ++ V
Sbjct: 57 IAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVL 116
Query: 550 RGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGFKYLTQ 593
+ +LH + I H DLK N+++ +EN + + +FG + Q
Sbjct: 117 SAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 58 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 117
Query: 525 NGNLSEKIRTKRDWAAKYK 543
GNLS +R+KR+ YK
Sbjct: 118 FGNLSTYLRSKRNEFVPYK 136
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 20/165 (12%)
Query: 548 VARGLCFL-HHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPA 601
VA+G+ FL C H DL A NI+ E + +FG +K + G
Sbjct: 209 VAKGMEFLASRKCI----HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARL 264
Query: 602 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE 661
+ W ++ + + DV+ FG ++ EI + G G + E
Sbjct: 265 PLKWMAPETIFDRVY-TIQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRR 315
Query: 662 NEVGSSSSLQDEIKLVLDVALL-CTRSTPSDRPSMEEALKLLSGL 705
+ G+ D + +L C PS RP+ E ++ L L
Sbjct: 316 LKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 360
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 56 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 525 NGNLSEKIRTKRDWAAKYK 543
GNLS +R+KR+ YK
Sbjct: 116 FGNLSTYLRSKRNEFVPYK 134
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 20/165 (12%)
Query: 548 VARGLCFL-HHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPA 601
VA+G+ FL C H DL A NI+ E + +FG +K + G
Sbjct: 207 VAKGMEFLASRKCI----HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARL 262
Query: 602 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE 661
+ W ++ + + DV+ FG ++ EI + G G + E
Sbjct: 263 PLKWMAPETIFDRVY-TIQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRR 313
Query: 662 NEVGSSSSLQDEIKLVLDVALL-CTRSTPSDRPSMEEALKLLSGL 705
+ G+ D + +L C PS RP+ E ++ L L
Sbjct: 314 LKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 358
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 491 FITRIGTVRHKNLIRL-LGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVA 549
F+ + V+ K+ + + + +C NR LYD + + NL+++ RD +++ +
Sbjct: 77 FVKPMTAVKKKSTLFIQMEYCENR----TLYDLIHSENLNQQ----RD--EYWRLFRQIL 126
Query: 550 RGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
L ++H I H DLK NI DE+ + +FG
Sbjct: 127 EALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGL 162
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 469 TGITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCY--NRHQAYLLYDY 522
TG V+VKKI + + E + H+N++ LL N YL++DY
Sbjct: 33 TGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDY 92
Query: 523 LPNGNLSEKIRTK-RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 581
+ +L IR + K +V + + + +LH + H D+K SNI+ +
Sbjct: 93 MET-DLHAVIRANILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHV 148
Query: 582 HLAEFGF 588
+A+FG
Sbjct: 149 KVADFGL 155
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 465 AVLPTGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 523
V +G V+VKK++ R +++ + + +H+N++ + + +++ ++L
Sbjct: 44 TVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 103
Query: 524 PNGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G L++ + T+ + + L V + L LH + H D+K+ +I+ +
Sbjct: 104 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVK 160
Query: 583 LAEFGF 588
L++FGF
Sbjct: 161 LSDFGF 166
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI 603
+V + +GL ++H + H DLK N+ +E+ E + +FG L + AD +
Sbjct: 149 LVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFG---LARHADAEMTGYV 202
Query: 604 A--WTESGE-FYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL----QNKPIDGLLG 656
W + E + M +D++ G I+ E+LT L L Q + G+ G
Sbjct: 203 VTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPG 262
Query: 657 EMYNE--NEVGSSSSLQDEIKL-VLDVALLCTRSTPSDRPSMEEALKL 701
+ + N+ + S +Q + D L R++P +E+ L+L
Sbjct: 263 TEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLEL 310
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 51 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 110
Query: 525 NGNLSEKIRTKRDWAAKYK 543
GNLS +R+KR+ YK
Sbjct: 111 FGNLSTYLRSKRNEFVPYK 129
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 20/165 (12%)
Query: 548 VARGLCFL-HHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPA 601
VA+G+ FL C H DL A NI+ E + +FG +K + G
Sbjct: 202 VAKGMEFLASRKCI----HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARL 257
Query: 602 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE 661
+ W ++ + + DV+ FG ++ EI + G G + E
Sbjct: 258 PLKWMAPETIFDRVY-TIQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRR 308
Query: 662 NEVGSSSSLQDEIKLVLDVALL-CTRSTPSDRPSMEEALKLLSGL 705
+ G+ D + +L C PS RP+ E ++ L L
Sbjct: 309 LKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 353
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 465 AVLPTGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 523
V +G V+VKK++ R +++ + + +H+N++ + + +++ ++L
Sbjct: 51 TVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 110
Query: 524 PNGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G L++ + T+ + + L V + L LH + H D+K+ +I+ +
Sbjct: 111 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVK 167
Query: 583 LAEFGF 588
L++FGF
Sbjct: 168 LSDFGF 173
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 465 AVLPTGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 523
V +G V+VKK++ R +++ + + +H+N++ + + +++ ++L
Sbjct: 40 TVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 99
Query: 524 PNGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G L++ + T+ + + L V + L LH + H D+K+ +I+ +
Sbjct: 100 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVK 156
Query: 583 LAEFGF 588
L++FGF
Sbjct: 157 LSDFGF 162
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 36/191 (18%)
Query: 121 IFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVP-AEISQLEHLKVLN 179
I NLT L SL ++ N P + SL +L A+ N + P A ++L LK+ N
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGN 230
Query: 180 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPW 239
N + D P L L +T +EIG N Q +
Sbjct: 231 ---------------------------NKITDLSP--LANLSQLTWLEIGTN--QISDIN 259
Query: 240 QLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLD 299
+ ++++++ L++ G+N I L+NL++L SLFL NQL + +T L +L
Sbjct: 260 AVKDLTKLKXLNV-GSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLF 317
Query: 300 LSDNRLSGPIP 310
LS N ++ P
Sbjct: 318 LSQNHITDIRP 328
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 269 TKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES-FADLKNLRLLSLMYN 327
T + L+L NQ+ P F + LK L L N+L G +P F L L +L L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 328 EMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIP 382
+++ +L L+ LF+ N + LP + R + L + + N SIP
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 262 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRL 321
P +L L+ L+L NQL F +T L LDL N+L+ F L +L+
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 322 LSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPE 359
L + N+++ +P + +L L L + N S+P
Sbjct: 117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH 152
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 469 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 524
T TV+VK ++ GAT + ++SE I H N++ LLG C + + ++
Sbjct: 49 TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 108
Query: 525 NGNLSEKIRTKRDWAAKYK 543
GNLS +R+KR+ YK
Sbjct: 109 FGNLSTYLRSKRNEFVPYK 127
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 20/165 (12%)
Query: 548 VARGLCFL-HHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPA 601
VA+G+ FL C H DL A NI+ E + +FG +K + G
Sbjct: 200 VAKGMEFLASRKCI----HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARL 255
Query: 602 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE 661
+ W ++ + + DV+ FG ++ EI + G G + E
Sbjct: 256 PLKWMAPETIFDRVY-TIQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRR 306
Query: 662 NEVGSSSSLQDEIKLVLDVALL-CTRSTPSDRPSMEEALKLLSGL 705
+ G+ D + +L C PS RP+ E ++ L L
Sbjct: 307 LKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 351
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 465 AVLPTGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 523
V +G V+VKK++ R +++ + + +H+N++ + + +++ ++L
Sbjct: 94 TVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153
Query: 524 PNGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G L++ + T+ + + L V + L LH + H D+K+ +I+ +
Sbjct: 154 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVK 210
Query: 583 LAEFGF 588
L++FGF
Sbjct: 211 LSDFGF 216
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 465 AVLPTGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 523
V +G V+VKK++ R +++ + + +H+N++ + + +++ ++L
Sbjct: 49 TVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 108
Query: 524 PNGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G L++ + T+ + + L V + L LH + H D+K+ +I+ +
Sbjct: 109 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVK 165
Query: 583 LAEFGF 588
L++FGF
Sbjct: 166 LSDFGF 171
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 265 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 324
LS LTKL++L L NQ++ VP + +T L++L LS N +S + LKNL +L L
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHISD--LRALCGLKNLDVLEL 202
Query: 325 MYNE 328
E
Sbjct: 203 FSQE 206
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARG 551
I + + H N+++LL Y + ++L ++ G + + + +I + +
Sbjct: 85 IDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQT 144
Query: 552 LCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
L L++ I H DLKA NI+F + + LA+FG
Sbjct: 145 LDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFG 180
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARG 551
I + + H N+++LL Y + ++L ++ G + + + +I + +
Sbjct: 85 IDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQT 144
Query: 552 LCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
L L++ I H DLKA NI+F + + LA+FG
Sbjct: 145 LDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFG 180
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARG 551
I + + H N+++LL Y + ++L ++ G + + + +I + +
Sbjct: 85 IDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQT 144
Query: 552 LCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
L L++ I H DLKA NI+F + + LA+FG
Sbjct: 145 LDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFG 180
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 53 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 112
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 113 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 169
Query: 585 EFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 170 DFG---LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 225
>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
Length = 369
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 111
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 112 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 168
Query: 585 EFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 169 DFG---LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 224
>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774
Length = 355
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CY 511
A AVL V++KK+ T K + + V HKN+I LL
Sbjct: 41 CAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLMKXVNHKNIISLLNVFTPQKTL 98
Query: 512 NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
Q L L + NL + I+ + D ++ + + LC + H I H DLK S
Sbjct: 99 EEFQDVYLVMELMDANLXQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPS 155
Query: 572 NIVFDENMEPHLAEFGFKYLTQLADGSF 599
NIV + + +FG L + A SF
Sbjct: 156 NIVVKSDXTLKILDFG---LARTAGTSF 180
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL-----SEKIRTKRDWAAKYKIVLGVARGL 552
+ +N ++ + + ++ +Y NG L SE + +RD +++ + L
Sbjct: 72 LERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRD--EYWRLFRQILEAL 129
Query: 553 CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
++H I H DLK NI DE+ + +FG
Sbjct: 130 SYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGL 162
>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 111
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 112 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 168
Query: 585 EFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 169 DFG---LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 224
>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 386
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 54 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 113
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 114 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 170
Query: 585 EFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ G L
Sbjct: 171 DFG---LARTAGTSFMMVPFVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 226
>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
Length = 364
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CY 511
A AVL V++KK+ T K + + V HKN+I LL
Sbjct: 41 CAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLMKXVNHKNIISLLNVFTPQKTL 98
Query: 512 NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
Q L L + NL + I+ + D ++ + G+ LH I H DLK S
Sbjct: 99 EEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKHLHS---AGIIHRDLKPS 155
Query: 572 NIVFDENMEPHLAEFGFKYLTQLADGSF 599
NIV + + +FG L + A SF
Sbjct: 156 NIVVKSDXTLKILDFG---LARTAGTSF 180
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARG 551
I + + H N+++LL Y + ++L ++ G + + + +I + +
Sbjct: 58 IDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQT 117
Query: 552 LCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
L L++ I H DLKA NI+F + + LA+FG
Sbjct: 118 LDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFG 153
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CY 511
A AVL V++KK+ T K + + V HKN+I LL
Sbjct: 41 CAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL 98
Query: 512 NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
Q L L + NL + I+ + D ++ + G+ LH I H DLK S
Sbjct: 99 EEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKHLHS---AGIIHRDLKPS 155
Query: 572 NIVFDENMEPHLAEFGFKYLTQLADGSF 599
NIV + + +FG L + A SF
Sbjct: 156 NIVVKSDXTLKILDFG---LARTAGTSF 180
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 475 VKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN--- 527
+KK ++R + E I R + +RH N+I L N+ L+ + + G
Sbjct: 45 IKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFD 104
Query: 528 -LSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV-FDENM 579
L+EK D A ++ + + G+ +LH I H DLK NI+ D+N+
Sbjct: 105 FLAEKESLTEDEATQF--LKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNV 153
>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor,
Sr- 3451
Length = 353
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CY 511
A AVL V++KK+ T K + + V HKN+I LL
Sbjct: 41 CAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLMKXVNHKNIISLLNVFTPQKTL 98
Query: 512 NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
Q L L + NL + I+ + D ++ + + LC + H I H DLK S
Sbjct: 99 EEFQDVYLVMELMDANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPS 155
Query: 572 NIVFDENMEPHLAEFGFKYLTQLADGSF 599
NIV + + +FG L + A SF
Sbjct: 156 NIVVKSDXTLKILDFG---LARTAGTSF 180
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CY 511
A AVL V++KK+ T K + + V HKN+I LL
Sbjct: 34 CAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL 91
Query: 512 NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
Q L L + NL + I+ + D ++ + G+ LH I H DLK S
Sbjct: 92 EEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKHLHS---AGIIHRDLKPS 148
Query: 572 NIVFDENMEPHLAEFGFKYLTQLADGSF 599
NIV + + +FG L + A SF
Sbjct: 149 NIVVKSDXTLKILDFG---LARTAGTSF 173
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 50/263 (19%), Positives = 97/263 (36%), Gaps = 37/263 (14%)
Query: 465 AVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
AVL + + +K + ++SE +H+N++ LLG C + ++ +Y
Sbjct: 75 AVLKVAVKM-LKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCC 133
Query: 525 NGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL-HHDCYPAIPH 565
G+L +R KR +Y VA+G+ FL +C H
Sbjct: 134 YGDLLNFLRRKRPPGLEYSYNPSHNPEEQLSSRDLLHFSSQVAQGMAFLASKNCI----H 189
Query: 566 GDLKASNIVFDENMEPHLAEFGFKY-----LTQLADGSFPAKIAWTESGEFYNAMKEEMY 620
D+ A N++ + +FG + G+ + W ++ + +
Sbjct: 190 RDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVY-TVQ 248
Query: 621 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 680
DV+ +G ++ EI + G L L N L+ + Y + + K + +
Sbjct: 249 SDVWSYGILLWEIFSLG-LNPYPGILVNSKFYKLVKDGYQMAQPAFAP------KNIYSI 301
Query: 681 ALLCTRSTPSDRPSMEEALKLLS 703
C P+ RP+ ++ L
Sbjct: 302 MQACWALEPTHRPTFQQICSFLQ 324
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q L L
Sbjct: 90 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELM 149
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 150 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 206
Query: 585 EFGFKYLTQLADGSF 599
+FG L + A SF
Sbjct: 207 DFG---LARTAGTSF 218
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 475 VKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN--- 527
+KK ++R + E I R + +RH N+I L N+ L+ + + G
Sbjct: 38 IKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFD 97
Query: 528 -LSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV-FDENM 579
L+EK D A ++ + + G+ +LH I H DLK NI+ D+N+
Sbjct: 98 FLAEKESLTEDEATQF--LKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNV 146
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 29 PSGLVMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 87
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K+ + V +GL +L I H D+K SNI+ + E
Sbjct: 88 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIK 145
Query: 583 LAEFG 587
L +FG
Sbjct: 146 LCDFG 150
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 29 PSGLVMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 87
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K+ + V +GL +L I H D+K SNI+ + E
Sbjct: 88 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIK 145
Query: 583 LAEFG 587
L +FG
Sbjct: 146 LCDFG 150
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 475 VKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN--- 527
+KK ++R + E I R + +RH N+I L N+ L+ + + G
Sbjct: 59 IKKRRLXSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFD 118
Query: 528 -LSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV-FDENM 579
L+EK D A ++ + + G+ +LH I H DLK NI+ D+N+
Sbjct: 119 FLAEKESLTEDEATQF--LKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNV 167
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 469 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 525
T + ++K I + S+ + + ++ H N+++L F ++ YL+ +
Sbjct: 61 THVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKG 120
Query: 526 GNLSEKI--RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
G L ++I R K + I+ V G+ +LH I H DLK N++ +
Sbjct: 121 GELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLE 170
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 469 TGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
+G V+VKK++ R +++ + + +H+N++ + + +++ ++L G
Sbjct: 175 SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGA 234
Query: 528 LSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 586
L++ + T+ + + L V + L LH + H D+K+ +I+ + L++F
Sbjct: 235 LTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDF 291
Query: 587 GF 588
GF
Sbjct: 292 GF 293
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CY 511
A AVL V++KK+ T K + + V HKN+I LL
Sbjct: 41 CAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL 98
Query: 512 NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
Q L L + NL + I+ + D ++ + + LC + H I H DLK S
Sbjct: 99 EEFQDVYLVMELMDANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPS 155
Query: 572 NIVFDENMEPHLAEFGFKYLTQLADGSF 599
NIV + + +FG L + A SF
Sbjct: 156 NIVVKSDCTLKILDFG---LARTAGTSF 180
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 29 PSGLVMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 87
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K+ + V +GL +L I H D+K SNI+ + E
Sbjct: 88 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIK 145
Query: 583 LAEFG 587
L +FG
Sbjct: 146 LCDFG 150
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 91 PSGLVMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 149
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K+ + V +GL +L I H D+K SNI+ + E
Sbjct: 150 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIK 207
Query: 583 LAEFG 587
L +FG
Sbjct: 208 LCDFG 212
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 485 IKIVSEFITRIGTVRHKNLIRLLGFCY--NRHQAYLLYDYLPNGNLSEKIRTK---RDWA 539
I+ V + I + + H N+++L+ N Y++++ + G + E K D A
Sbjct: 80 IEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQA 139
Query: 540 AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
Y + +G+ +LH Y I H D+K SN++ E+ +A+FG
Sbjct: 140 RFY--FQDLIKGIEYLH---YQKIIHRDIKPSNLLVGEDGHIKIADFG 182
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q L L
Sbjct: 53 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELM 112
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 113 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 169
Query: 585 EFGFKYLTQLADGSF 599
+FG L + A SF
Sbjct: 170 DFG---LARTAGTSF 181
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 29 PSGLVMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 87
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K+ + V +GL +L I H D+K SNI+ + E
Sbjct: 88 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIK 145
Query: 583 LAEFG 587
L +FG
Sbjct: 146 LCDFG 150
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q L L
Sbjct: 90 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELM 149
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 150 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 206
Query: 585 EFGFKYLTQLADGSF 599
+FG L + A SF
Sbjct: 207 DFG---LARTAGTSF 218
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q L L
Sbjct: 53 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELM 112
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 113 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 169
Query: 585 EFGFKYLTQLADGSF 599
+FG L + A SF
Sbjct: 170 DFG---LARTAGTSF 181
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q L L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELM 111
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 112 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 168
Query: 585 EFGFKYLTQLADGSF 599
+FG L + A SF
Sbjct: 169 DFG---LARTAGTSF 180
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CY 511
A AVL V++KK+ T K + + V HKN+I LL
Sbjct: 40 CAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL 97
Query: 512 NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
Q L L + NL + I+ + D ++ + + LC + H I H DLK S
Sbjct: 98 EEFQDVYLVMELMDANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPS 154
Query: 572 NIVFDENMEPHLAEFGFKYLTQLADGSF 599
NIV + + +FG L + A SF
Sbjct: 155 NIVVKSDCTLKILDFG---LARTAGTSF 179
>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3
Length = 355
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CY 511
A AVL V++KK+ T K + + V HKN+I LL
Sbjct: 34 CAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL 91
Query: 512 NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
Q L L + NL + I+ + D ++ + + LC + H I H DLK S
Sbjct: 92 EEFQDVYLVMELMDANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPS 148
Query: 572 NIVFDENMEPHLAEFGFKYLTQLADGSF 599
NIV + + +FG L + A SF
Sbjct: 149 NIVVKSDCTLKILDFG---LARTAGTSF 173
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 491 FITR----IGTVRHKNLIRLLGFCY-NRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYK 543
++TR + + H ++L FC+ + + Y Y NG L + IR D
Sbjct: 83 YVTRERDVMSRLDHPFFVKLY-FCFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF 141
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 142 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 182
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 463 CKAVLPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYL 518
CK + TG +VK I + K E + R + + H N+ +L F ++ YL
Sbjct: 45 CKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIXKLYEFFEDKGYFYL 103
Query: 519 LYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+ + G L ++I +++ ++ +I+ V G+ + H + I H DLK N++ +
Sbjct: 104 VGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYXHKN---KIVHRDLKPENLLLE 160
>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3
Length = 356
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 460 AAGCKAVLPTGITVSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CY 511
A AVL V++KK+ T K + + V HKN+I LL
Sbjct: 35 CAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL 92
Query: 512 NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 571
Q L L + NL + I+ + D ++ + + LC + H I H DLK S
Sbjct: 93 EEFQDVYLVMELMDANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPS 149
Query: 572 NIVFDENMEPHLAEFGFKYLTQLADGSF 599
NIV + + +FG L + A SF
Sbjct: 150 NIVVKSDCTLKILDFG---LARTAGTSF 174
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 40/242 (16%)
Query: 481 GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-------- 532
G R + E + R ++H N++ LLG +++ Y +G+L E +
Sbjct: 70 GPLREEFRHEAMLR-ARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSD 128
Query: 533 --RTKRDWAAK--------YKIVLGVARGLCFL--HHDCYPAIPHGDLKASNIVFDENME 580
T D K +V +A G+ +L HH + H DL N++ + +
Sbjct: 129 VGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH-----VVHKDLATRNVLVYDKLN 183
Query: 581 PHLAEFGFKYLTQLAD-----GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++ G AD G+ I W + E K + D++ +G ++ E+ +
Sbjct: 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWM-APEAIMYGKFSIDSDIWSYGVVLWEVFS 242
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM 695
G G S Q+ + EM +V D V + + C PS RP
Sbjct: 243 YGLQPYCGYSNQD------VVEMIRNRQVLPCPD--DCPAWVYALMIECWNEFPSRRPRF 294
Query: 696 EE 697
++
Sbjct: 295 KD 296
>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
pdb|4H39|A Chain A, Crystal Structure Of Jnk3 In Complex With Jip1 Peptide
pdb|4H3B|A Chain A, Crystal Structure Of Jnk3 In Complex With Sab Peptide
pdb|4H3B|C Chain C, Crystal Structure Of Jnk3 In Complex With Sab Peptide
Length = 356
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q L L
Sbjct: 46 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELM 105
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 106 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 162
Query: 585 EFGFKYLTQLADGSF 599
+FG L + A SF
Sbjct: 163 DFG---LARTAGTSF 174
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 29 PSGLVMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 87
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K+ + V +GL +L I H D+K SNI+ + E
Sbjct: 88 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIK 145
Query: 583 LAEFG 587
L +FG
Sbjct: 146 LCDFG 150
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 56 PSGLVMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 114
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K+ + V +GL +L I H D+K SNI+ + E
Sbjct: 115 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIK 172
Query: 583 LAEFG 587
L +FG
Sbjct: 173 LCDFG 177
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 48 PSGLVMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 106
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K+ + V +GL +L I H D+K SNI+ + E
Sbjct: 107 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIK 164
Query: 583 LAEFG 587
L +FG
Sbjct: 165 LCDFG 169
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARG 551
+ + ++H N+++ Y++ DY G+L ++I ++ + +L
Sbjct: 74 VAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQ 133
Query: 552 LCF-LHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
+C L H I H D+K+ NI ++ L +FG
Sbjct: 134 ICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGI 171
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 468 PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC---YNRHQAYLLYDYLP 524
P+G+ ++ K I + I ++ I + + N ++GF Y+ + + +++
Sbjct: 32 PSGLVMARKLIHL-EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 90
Query: 525 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 582
G+L + ++ + K+ + V +GL +L I H D+K SNI+ + E
Sbjct: 91 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIK 148
Query: 583 LAEFG 587
L +FG
Sbjct: 149 LCDFG 153
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 84/230 (36%), Gaps = 31/230 (13%)
Query: 497 TVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--------YKIVLGV 548
T H N++RL C L ++ + + T D + ++ +
Sbjct: 70 TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQL 129
Query: 549 ARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK--YLTQLADGSFPAKIAWT 606
RGL FLH + H DLK NI+ + + LA+FG Y Q+A S + W
Sbjct: 130 LRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTL-WY 185
Query: 607 ESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN--KPID--GLLGEMYNEN 662
+ E +D++ G I E+ L S + K +D GL GE
Sbjct: 186 RAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPR 245
Query: 663 EVG------SSSSLQDEIKLVLDVA-------LLCTRSTPSDRPSMEEAL 699
+V S S Q K V D+ L C P+ R S AL
Sbjct: 246 DVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSAL 295
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 469 TGITVSVKKI-EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
T I + KKI ++ + + I + ++ H N+IRL + YL+ + G
Sbjct: 50 TRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGE 109
Query: 528 LSEKIRTKRDW--AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENMEP-H 582
L E++ KR + + +I+ V + + H + H DLK N +F D P
Sbjct: 110 LFERVVHKRVFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLK 166
Query: 583 LAEFGFKYLTQLADGSFPAKIAWTESGEFY 612
L +FG LA P K+ T+ G Y
Sbjct: 167 LIDFG------LAARFKPGKMMRTKVGTPY 190
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 86/235 (36%), Gaps = 31/235 (13%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--------YK 543
+ + T H N++RL C L ++ + + T D +
Sbjct: 65 LRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKD 124
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK--YLTQLADGSFPA 601
++ + RGL FLH + H DLK NI+ + + LA+FG Y Q+A S
Sbjct: 125 MMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV 181
Query: 602 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN--KPID--GLLGE 657
+ W + E +D++ G I E+ L S + K +D GL GE
Sbjct: 182 TL-WYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGE 240
Query: 658 MYNENEVG------SSSSLQDEIKLVLDVA-------LLCTRSTPSDRPSMEEAL 699
+V S S Q K V D+ L C P+ R S AL
Sbjct: 241 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSAL 295
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 467 LPTGITVSVKKIEWGATRI-KIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
L + +++K+I +R + + E I ++HKN+++ LG + + +P
Sbjct: 44 LSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPG 103
Query: 526 GNLSEKIRTKRDWAAKYKIVLG-----VARGLCFLHHDCYPAIPHGDLKASNIVFD 576
G+LS +R+K + +G + GL +LH + I H D+K N++ +
Sbjct: 104 GSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLIN 156
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 40/242 (16%)
Query: 481 GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-------- 532
G R + E + R ++H N++ LLG +++ Y +G+L E +
Sbjct: 53 GPLREEFRHEAMLR-ARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSD 111
Query: 533 --RTKRDWAAK--------YKIVLGVARGLCFL--HHDCYPAIPHGDLKASNIVFDENME 580
T D K +V +A G+ +L HH + H DL N++ + +
Sbjct: 112 VGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH-----VVHKDLATRNVLVYDKLN 166
Query: 581 PHLAEFGFKYLTQLAD-----GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
+++ G AD G+ I W + E K + D++ +G ++ E+ +
Sbjct: 167 VKISDLGLFREVYAADYYKLLGNSLLPIRWM-APEAIMYGKFSIDSDIWSYGVVLWEVFS 225
Query: 636 NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM 695
G G S Q+ + EM +V D V + + C PS RP
Sbjct: 226 YGLQPYCGYSNQD------VVEMIRNRQVLPCPD--DCPAWVYALMIECWNEFPSRRPRF 277
Query: 696 EE 697
++
Sbjct: 278 KD 279
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 467 LPTGITVSVKKIEWGATRI-KIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 525
L + +++K+I +R + + E I ++HKN+++ LG + + +P
Sbjct: 30 LSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPG 89
Query: 526 GNLSEKIRTKRDWAAKYKIVLG-----VARGLCFLHHDCYPAIPHGDLKASNIVFD 576
G+LS +R+K + +G + GL +LH + I H D+K N++ +
Sbjct: 90 GSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLIN 142
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 469 TGITVSVKKI-EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 527
T I + KKI ++ + + I + ++ H N+IRL + YL+ + G
Sbjct: 33 TRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGE 92
Query: 528 LSEKIRTKRDW--AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENMEP-H 582
L E++ KR + + +I+ V + + H + H DLK N +F D P
Sbjct: 93 LFERVVHKRVFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLK 149
Query: 583 LAEFGFKYLTQLADGSFPAKIAWTESGEFY 612
L +FG LA P K+ T+ G Y
Sbjct: 150 LIDFG------LAARFKPGKMMRTKVGTPY 173
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNG 526
G T ++KKI I S I I ++ H N+++L + + + L++++L
Sbjct: 26 GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQD 85
Query: 527 --NLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L + + +L + G+ + H + H DLK N++ + E +A
Sbjct: 86 LKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIA 142
Query: 585 EFGF 588
+FG
Sbjct: 143 DFGL 146
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 86/235 (36%), Gaps = 31/235 (13%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--------YK 543
+ + T H N++RL C L ++ + + T D +
Sbjct: 65 LRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKD 124
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK--YLTQLADGSFPA 601
++ + RGL FLH + H DLK NI+ + + LA+FG Y Q+A S
Sbjct: 125 MMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV 181
Query: 602 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN--KPID--GLLGE 657
+ W + E +D++ G I E+ L S + K +D GL GE
Sbjct: 182 TL-WYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGE 240
Query: 658 MYNENEVG------SSSSLQDEIKLVLDVA-------LLCTRSTPSDRPSMEEAL 699
+V S S Q K V D+ L C P+ R S AL
Sbjct: 241 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSAL 295
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNG 526
G T ++KKI I S I I ++ H N+++L + + + L++++L
Sbjct: 26 GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQD 85
Query: 527 --NLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L + + +L + G+ + H + H DLK N++ + E +A
Sbjct: 86 LKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIA 142
Query: 585 EFGF 588
+FG
Sbjct: 143 DFGL 146
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 470 GITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNG 526
G T ++KKI I S I I ++ H N+++L + + + L++++L
Sbjct: 26 GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQD 85
Query: 527 --NLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
L + + +L + G+ + H + H DLK N++ + E +A
Sbjct: 86 LKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIA 142
Query: 585 EFGF 588
+FG
Sbjct: 143 DFGL 146
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 92/233 (39%), Gaps = 37/233 (15%)
Query: 490 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRD-----WAAKYKI 544
E + + + HK+L+ G C+ + L+ +++ G+L ++ ++ W K ++
Sbjct: 61 EAASMMSKLSHKHLVLNYGVCFCGDENILVQEFVKFGSLDTYLKKNKNCINILW--KLEV 118
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENMEP------HLAEFGFKYLTQLAD 596
+A + FL + + HG++ A NI+ +E+ + L++ G +T L
Sbjct: 119 AKQLAWAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS-ITVLPK 174
Query: 597 GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG 656
+I W N + D + FG + EI + G +KP+ L
Sbjct: 175 DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGG----------DKPLSALDS 224
Query: 657 ----EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
+ Y + + + L+ + C P RPS ++ L+ L
Sbjct: 225 QRKLQFYEDRHQLPAPKAAELANLINN----CMDYEPDHRPSFRAIIRDLNSL 273
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 44/283 (15%)
Query: 106 LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF---- 161
+NL + FS T + LD++ + +G P GI+ + +L L +NSF
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLC 316
Query: 162 ---SGSVPA------------------EISQLEHLKVLNLAGSYF--SGPIPSQFGSFKS 198
+ S P+ + +LE+L+ L+L+ S S Q + +
Sbjct: 317 QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRH 376
Query: 199 LEFLHLAGNL---LNDQIPAELGMLKTV----THMEIGYNFYQGNIPWQLGNMSEVQYLD 251
L++L+L+ N L DQ E L+ + TH+ + + P+Q N+ ++ L+
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVK----APHSPFQ--NLHLLRVLN 430
Query: 252 IAGANLSGSIPKELSNLTKLESLFLFRNQLA-GQVPWE--FSRVTTLKSLDLSDNRLSGP 308
++ L S L+ L L L L N G + V +L+ L LS L
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSI 490
Query: 309 IPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 351
++F L+N+ L L +N ++G ++L L L + NN
Sbjct: 491 DQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNN 533
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 245 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQL-------AGQVP----------- 286
+ VQ LD+ A+L+G +P + + L+ L L N A P
Sbjct: 277 TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNM 335
Query: 287 -------WEFSRVTTLKSLDLS--DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL 337
++ L+ LDLS D S +L++L+ L+L YNE G ++
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAF 395
Query: 338 VQLPSLEILFIWNNYFSGSLPENLGRNSKLRWV 370
+ P LE+L + + P + +N L V
Sbjct: 396 KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRV 428
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
I+ + +GL +LH + H D+KA+N++ E+ E LA+FG
Sbjct: 129 ILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFG 169
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK---YLTQLADGSFP 600
I+ + +GL +LH + H D+KA+N++ E+ E LA+FG TQ+ +F
Sbjct: 109 ILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV 165
Query: 601 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEI 633
W + E + D++ G +E+
Sbjct: 166 GTPFWM-APEVIKQSAYDSKADIWSLGITAIEL 197
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
I+ + +GL +LH + H D+KA+N++ E+ E LA+FG
Sbjct: 109 ILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFG 149
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH 557
V H +++L + YL+ D+L G+L ++ +K + + +A L H
Sbjct: 83 VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRL-SKEVMFTEEDVKFYLAELALALDH 141
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT---QLADGSFPAKIAWTESGEFYNA 614
I + DLK NI+ DE L +FG + + SF + + + E N
Sbjct: 142 LHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYM-APEVVNR 200
Query: 615 MKEEMYMDVYGFGEIILEILT 635
D + FG ++ E+LT
Sbjct: 201 RGHTQSADWWSFGVLMFEMLT 221
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH 557
V H +++L + YL+ D+L G+L ++ +K + + +A L H
Sbjct: 84 VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRL-SKEVMFTEEDVKFYLAELALALDH 142
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT---QLADGSFPAKIAWTESGEFYNA 614
I + DLK NI+ DE L +FG + + SF + + + E N
Sbjct: 143 LHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYM-APEVVNR 201
Query: 615 MKEEMYMDVYGFGEIILEILT 635
D + FG ++ E+LT
Sbjct: 202 RGHTQSADWWSFGVLMFEMLT 222
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 34/214 (15%)
Query: 105 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNL------------L 152
+L+LS N F+ L LD+SR G QSL +L L
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 153 VLDAFS--NSFSGSVPAE----------ISQLEHLKVLNLAGSYF-SGPIPSQFGSFKSL 199
L AFS +S V E I L+ LK LN+A + S +P F + +L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 200 EFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPW-QLGNMSEVQYLDIA-GANL 257
E L L+ N + +L +L + + + + + + Q G E++ ++A N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211
Query: 258 SGSIPKEL-SNLTKLESLFLFRNQLAGQVPWEFS 290
S+P + LT L+ ++L N PW+ S
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN------PWDCS 239
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 196 FKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQ--GNIPWQLGNMSEVQYLDIA 253
F + H+ NLL D ++ ++H+E+ N + ++ L N+ +++
Sbjct: 130 FTTRRLTHIPANLLTD--------MRNLSHLELRANIEEMPSHLFDDLENLESIEF---- 177
Query: 254 GANLSGSIPKEL-SNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDN 303
G+N +P+ + + KL+ L L NQL F R+T+L+ + L N
Sbjct: 178 GSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%)
Query: 245 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 304
S +YL++ N+ +L LE L L RN + F+ + +L +L+L DN
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 305 LSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSL 343
L+ +F L LR L L N + + ++PSL
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 43/210 (20%)
Query: 461 AGCKAVLPT--GITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH 514
A C +LP + V+VK + E + +E +T ++H++++R G C
Sbjct: 60 AECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLT---MLQHQHIVRFFGVCTEGR 116
Query: 515 QAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG--------------------VARGLCF 554
++++Y+ +G+L+ +R+ K++ G VA G+ +
Sbjct: 117 PLLMVFEYMRHGDLNRFLRSH---GPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVY 173
Query: 555 LHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-----GSFPAKIAWTESG 609
L + H DL N + + + + +FG D G I W
Sbjct: 174 LAGLHF---VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPE 230
Query: 610 E-FYNAMKEEMYMDVYGFGEIILEILTNGR 638
Y E DV+ FG ++ EI T G+
Sbjct: 231 SILYRKFTTE--SDVWSFGVVLWEIFTYGK 258
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or70
Length = 245
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 153 VLDAFSNSFSGSVPAE-ISQLEHLKVLNLAGSY--FSGPIPS--------QFGSFKSLEF 201
+DA FS E + ++ H + L + G F+GP+ S F +++
Sbjct: 47 AIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFAGPLQSNKSRLVAEHFDWCITIDR 106
Query: 202 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI 261
L +A L NDQ PAEL L + + I + I ++E+ L A A L
Sbjct: 107 LRIATRL-NDQRPAELPPLNVLIQINISDENSKSGI-----QLAELDELAAAVAELPRLR 160
Query: 262 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTT 294
+ LS + ES ++ + ++A Q+ F+ + T
Sbjct: 161 LRGLSAIPAPESEYVRQFEVARQMAVAFAGLKT 193
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
I+ + +GL +LH + H D+KA+N++ E+ E LA+FG
Sbjct: 124 ILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFG 164
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH 557
V H +++L + YL+ D+L G+L ++ +K + + +A L H
Sbjct: 83 VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRL-SKEVMFTEEDVKFYLAELALALDH 141
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT---QLADGSFPAKIAWTESGEFYNA 614
I + DLK NI+ DE L +FG + + SF + + + E N
Sbjct: 142 LHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYM-APEVVNR 200
Query: 615 MKEEMYMDVYGFGEIILEILT 635
D + FG ++ E+LT
Sbjct: 201 RGHTQSADWWSFGVLMFEMLT 221
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 34/214 (15%)
Query: 105 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNL------------L 152
+L+LS N F+ L LD+SR G QSL +L L
Sbjct: 33 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 92
Query: 153 VLDAFS--NSFSGSVPAE----------ISQLEHLKVLNLAGSYF-SGPIPSQFGSFKSL 199
L AFS +S V E I L+ LK LN+A + S +P F + +L
Sbjct: 93 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 200 EFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPW-QLGNMSEVQYLDIA-GANL 257
E L L+ N + +L +L + + + + + + Q G E++ ++A N
Sbjct: 153 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 212
Query: 258 SGSIPKEL-SNLTKLESLFLFRNQLAGQVPWEFS 290
S+P + LT L+ ++L N PW+ S
Sbjct: 213 LKSVPDGIFDRLTSLQKIWLHTN------PWDCS 240
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 34/214 (15%)
Query: 105 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNL------------L 152
+L+LS N F+ L LD+SR G QSL +L L
Sbjct: 34 NLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 93
Query: 153 VLDAFS--NSFSGSVPAE----------ISQLEHLKVLNLAGSYF-SGPIPSQFGSFKSL 199
L AFS +S V E I L+ LK LN+A + S +P F + +L
Sbjct: 94 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 200 EFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPW-QLGNMSEVQYLDIA-GANL 257
E L L+ N + +L +L + + + + + + Q G E++ ++A N
Sbjct: 154 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 213
Query: 258 SGSIPKEL-SNLTKLESLFLFRNQLAGQVPWEFS 290
S+P + LT L+ ++L N PW+ S
Sbjct: 214 LKSVPDGIFDRLTSLQKIWLHTN------PWDCS 241
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Query: 105 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS 164
+L+LS N F+ L LD+SR G QSL +L L N
Sbjct: 33 NLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 92
Query: 165 VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELGMLKTV 223
S L L+ L + + G K+L+ L++A NL+ ++P L +
Sbjct: 93 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 224 THMEIGYNFYQG 235
H+++ N Q
Sbjct: 153 EHLDLSSNKIQS 164
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 14/148 (9%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYK---IVLGVARGLCF 554
RH N++ +G+ + A ++ + +L + + + ++ I A+G+ +
Sbjct: 89 TRHVNILLFMGYMTKDNLA-IVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDY 147
Query: 555 LHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK-----IAWT--E 607
LH I H D+K++NI E + + +FG + GS + + W E
Sbjct: 148 LHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPE 204
Query: 608 SGEFYNAMKEEMYMDVYGFGEIILEILT 635
+ DVY +G ++ E++T
Sbjct: 205 VIRMQDNNPFSFQSDVYSYGIVLYELMT 232
>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O17|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O2M|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
pdb|3O2M|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
Length = 370
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 111
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 112 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 168
Query: 585 EFGFKYLTQLADGSF---PAKIA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 639
+FG L + A SF P + + + E M + +D++ G I+ E++ + L
Sbjct: 169 DFG---LARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVCHKIL 224
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 78 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 137
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 177
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 81 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 140
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 141 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 180
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 469 TGITVSVKKIEWGATRIKI--VSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 526
+G+ +K I +++ + + I + ++ H N+I++ + H Y++ + G
Sbjct: 46 SGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGG 105
Query: 527 NLSEKIRTKRDWAAKY------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 580
L E+I + + +++ + L + H + H DLK NI+F ++
Sbjct: 106 ELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILF-QDTS 161
Query: 581 PH----LAEFGFKYL 591
PH + +FG L
Sbjct: 162 PHSPIKIIDFGLAEL 176
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 79 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 138
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 139 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 178
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 469 TGITVSVKKIEWGATRIK--IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 526
TG +VK I A + K + I + ++H+N++ L + + YL+ + G
Sbjct: 46 TGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGG 105
Query: 527 NLSEKIRTKRDWAAK--YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEP 581
L ++I K + K ++ V + +LH I H DLK N+++ DE +
Sbjct: 106 ELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHR---MGIVHRDLKPENLLYYSQDEESKI 162
Query: 582 HLAEFGFKYLTQLAD 596
+++FG + D
Sbjct: 163 MISDFGLSKMEGKGD 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 34/214 (15%)
Query: 105 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNL------------L 152
+L+LS N F+ L LD+SR G QSL +L L
Sbjct: 34 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 93
Query: 153 VLDAFS--NSFSGSVPAE----------ISQLEHLKVLNLAGSYF-SGPIPSQFGSFKSL 199
L AFS +S V E I L+ LK LN+A + S +P F + +L
Sbjct: 94 ALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 200 EFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPW-QLGNMSEVQYLDIA-GANL 257
E L L+ N + +L +L + + + + + + Q G E++ ++A N
Sbjct: 154 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 213
Query: 258 SGSIPKEL-SNLTKLESLFLFRNQLAGQVPWEFS 290
S+P + LT L+ ++L N PW+ S
Sbjct: 214 LKSVPDGIFDRLTSLQKIWLHTN------PWDCS 241
>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine
Inhibitor
Length = 369
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 57 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 116
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 117 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 173
Query: 585 EFGFKYLTQLADGSF 599
+FG L + A SF
Sbjct: 174 DFG---LARTAGTSF 185
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 43/210 (20%)
Query: 461 AGCKAVLPT--GITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH 514
A C +LP + V+VK + E + +E +T ++H++++R G C
Sbjct: 37 AECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLT---MLQHQHIVRFFGVCTEGR 93
Query: 515 QAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG--------------------VARGLCF 554
++++Y+ +G+L+ +R+ K++ G VA G+ +
Sbjct: 94 PLLMVFEYMRHGDLNRFLRSH---GPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVY 150
Query: 555 LHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-----GSFPAKIAWTESG 609
L + H DL N + + + + +FG D G I W
Sbjct: 151 LAGLHF---VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPE 207
Query: 610 E-FYNAMKEEMYMDVYGFGEIILEILTNGR 638
Y E DV+ FG ++ EI T G+
Sbjct: 208 SILYRKFTTE--SDVWSFGVVLWEIFTYGK 235
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 509 FC--YNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIP 564
FC + + + +YL G+L I++ K D + + GL FLH I
Sbjct: 84 FCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS---KGIV 140
Query: 565 HGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS------FPAKIAWTESGEFYNAMKEE 618
+ DLK NI+ D++ +A+FG L D P IA E K
Sbjct: 141 YRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNXFCGTPDYIA----PEILLGQKYN 196
Query: 619 MYMDVYGFGEIILEIL 634
+D + FG ++ E+L
Sbjct: 197 HSVDWWSFGVLLYEML 212
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 43/210 (20%)
Query: 461 AGCKAVLPT--GITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH 514
A C +LP + V+VK + E + +E +T ++H++++R G C
Sbjct: 31 AECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLT---MLQHQHIVRFFGVCTEGR 87
Query: 515 QAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG--------------------VARGLCF 554
++++Y+ +G+L+ +R+ K++ G VA G+ +
Sbjct: 88 PLLMVFEYMRHGDLNRFLRSH---GPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVY 144
Query: 555 LHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-----GSFPAKIAWTESG 609
L + H DL N + + + + +FG D G I W
Sbjct: 145 LAGLHF---VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPE 201
Query: 610 E-FYNAMKEEMYMDVYGFGEIILEILTNGR 638
Y E DV+ FG ++ EI T G+
Sbjct: 202 SILYRKFTTE--SDVWSFGVVLWEIFTYGK 229
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 76 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 135
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 136 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 175
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 79 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 138
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 139 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 178
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 78 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 137
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 177
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 75 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 134
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 135 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 174
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 78 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 137
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 177
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 76 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 135
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 136 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 175
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 76 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 135
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 136 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 175
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 75 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 134
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 135 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 174
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 78 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 137
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 177
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 78 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 137
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 177
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 76 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 135
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 136 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 175
>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor
Length = 358
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------HQAYLLYDYL 523
V++KK+ T K + + V HKN+I LL + Y++ + L
Sbjct: 46 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVME-L 104
Query: 524 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 105 MDANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKI 161
Query: 584 AEFGFKYLTQLADGSF 599
+FG L + A SF
Sbjct: 162 LDFG---LARTAGTSF 174
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 32/214 (14%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI--RTKRDWAAKYKIVLGVARGLCFLHH 557
H N+++L F ++ YL+ + G L ++I R K I+ V G +LH
Sbjct: 80 HPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAAVIMKQVLSGTTYLHK 139
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHL---AEFGFKYLTQLADGSFPAKI--AWTESGEFY 612
I H DLK N++ + L +FG ++ G ++ A+ + E
Sbjct: 140 H---NIVHRDLKPENLLLESKSRDALIKIVDFGLSAHFEVG-GKMKERLGTAYYIAPEVL 195
Query: 613 NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS---- 668
+E DV+ G +IL IL G G + Q E+ E G S
Sbjct: 196 RKKYDEK-CDVWSCG-VILYILLCGYPPFGGQTDQ---------EILKRVEKGKFSFDPP 244
Query: 669 ---SLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 699
+ DE K + V L+ T PS R S EEAL
Sbjct: 245 DWTQVSDEAKQL--VKLMLTYE-PSKRISAEEAL 275
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 509 FC--YNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIP 564
FC + + + +YL G+L I++ K D + + GL FLH I
Sbjct: 85 FCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS---KGIV 141
Query: 565 HGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS 598
+ DLK NI+ D++ +A+FG L D
Sbjct: 142 YRDLKLDNILLDKDGHIKIADFGMCKENMLGDAK 175
>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
Length = 370
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 473 VSVKKIE---WGATRIKIVSEFITRIGTVRHKNLIRLLGF-----CYNRHQAYLLYDYLP 524
V++KK+ T K + + V HKN+I LL Q + L
Sbjct: 52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELM 111
Query: 525 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 584
+ NL + I+ + D ++ + + LC + H I H DLK SNIV + +
Sbjct: 112 DANLCQVIQMELDHE---RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKIL 168
Query: 585 EFGFKYLTQLADGSF 599
+FG L + A SF
Sbjct: 169 DFG---LARTAGTSF 180
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 56 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 115
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 116 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 155
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 509 FCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL 568
+C NR LYD + + NL+++ RD +++ + L ++H I H +L
Sbjct: 96 YCENR----TLYDLIHSENLNQQ----RD--EYWRLFRQILEALSYIHSQ---GIIHRNL 142
Query: 569 KASNIVFDENMEPHLAEFGF 588
K NI DE+ + +FG
Sbjct: 143 KPXNIFIDESRNVKIGDFGL 162
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-----RTKRDWAAKYKIVL 546
I + ++H N++ L + YL+ + G L ++I T+RD + +++
Sbjct: 67 IAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDAS---RLIF 123
Query: 547 GVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGF 588
V + +LH I H DLK N+++ DE+ + +++FG
Sbjct: 124 QVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGL 165
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 50/244 (20%)
Query: 174 HLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE-LGMLKT-------VTH 225
++K L+L+G+ S + F LE L+L+ N+L + + E L L+T V
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94
Query: 226 MEIG------------------------YNFYQGNIPWQL------GNMSEVQYLDIAGA 255
+ +G N Y N + G S VQYLD+
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 256 NLSGSIPKELS----NLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE 311
+ EL+ L L + F + GQV + LK+LDLS N+L+ PE
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-----AKLKTLDLSSNKLAFMGPE 209
Query: 312 SFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF-SGSLPENLGRNSKLRWV 370
F + +SL N++ + ++L +LE + N F G+L + +N +++ V
Sbjct: 210 -FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 371 DVST 374
T
Sbjct: 268 AKQT 271
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 53 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 112
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 113 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 152
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 64 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 124 I---GITHRDIKPENLLLDERDNLKISDFGLATVFRY 157
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 55 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 114
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 115 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 154
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 54 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 113
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 114 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 153
>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain
Length = 316
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 467 LPTGITVSVKKIEW--GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
L T +VK IE G R ++ E H+N++ L+ F + YL+++ +
Sbjct: 35 LITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMR 94
Query: 525 NGNLSEKIRTKRDW--AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
G++ I +R + +V VA L FLH+ I H DLK NI+ +
Sbjct: 95 GGSILSHIHKRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCE 145
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 491 FITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKI 544
++TR + + H ++L + + Y Y NG L + IR D
Sbjct: 60 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFY 119
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
+ L +LH I H DLK NI+ +E+M + +FG
Sbjct: 120 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 159
>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g
pdb|2HW7|A Chain A, Crystal Structure Of Mnk2-D228g In Complex With
Staurosporine
Length = 316
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 467 LPTGITVSVKKIEW--GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
L T +VK IE G R ++ E H+N++ L+ F + YL+++ +
Sbjct: 35 LITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMR 94
Query: 525 NGNLSEKIRTKRDW--AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
G++ I +R + +V VA L FLH+ I H DLK NI+ +
Sbjct: 95 GGSILSHIHKRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCE 145
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT----KRDWAAKY--KIVLGVARGLC 553
H+N++ ++ YL+ +Y+ LSE I + D A + +I+ G+
Sbjct: 70 HQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHA-- 127
Query: 554 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
HD I H D+K NI+ D N + +FG
Sbjct: 128 ---HDM--RIVHRDIKPQNILIDSNKTLKIFDFGI 157
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK---YLTQLADGSFPAKIA 604
+ +GL +LH + H D+KA+N++ E + LA+FG TQ+ +F
Sbjct: 129 ILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPF 185
Query: 605 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV 664
W + E + D++ G +E L G N S + + L+ + V
Sbjct: 186 WM-APEVIQQSAYDSKADIWSLGITAIE-LAKGEPPN--SDMHPMRVLFLIPKNNPPTLV 241
Query: 665 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 700
G K +D C PS RP+ +E LK
Sbjct: 242 G---DFTKSFKEFIDA---CLNKDPSFRPTAKELLK 271
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-----RTKRDWAAKYKIVL 546
I + ++H N++ L + YL+ + G L ++I T+RD + +++
Sbjct: 67 IAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDAS---RLIF 123
Query: 547 GVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGF 588
V + +LH I H DLK N+++ DE+ + +++FG
Sbjct: 124 QVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGL 165
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 37/233 (15%)
Query: 490 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRD-----WAAKYKI 544
E + + + HK+L+ G C + L+ +++ G+L ++ ++ W K ++
Sbjct: 61 EAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILW--KLEV 118
Query: 545 VLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENMEP------HLAEFGFKYLTQLAD 596
+A + FL + + HG++ A NI+ +E+ + L++ G +T L
Sbjct: 119 AKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS-ITVLPK 174
Query: 597 GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG 656
+I W N + D + FG + EI + G +KP+ L
Sbjct: 175 DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGG----------DKPLSALDS 224
Query: 657 ----EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 705
+ Y + + + L+ + C P RPS ++ L+ L
Sbjct: 225 QRKLQFYEDRHQLPAPKAAELANLINN----CMDYEPDHRPSFRAIIRDLNSL 273
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 467 LPTGITVSVKKIEWGATRIK--IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
+ TG V+++++ K I++E + + ++ N++ L + +++ +YL
Sbjct: 43 VATGQEVAIRQMNLQQQPKKELIINEILV-MRENKNPNIVNYLDSYLVGDELWVVMEYLA 101
Query: 525 NGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
G+L++ + T D + + L FLH + + H D+K+ NI+ + L
Sbjct: 102 GGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKL 158
Query: 584 AEFGF 588
+FGF
Sbjct: 159 TDFGF 163
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 467 LPTGITVSVKKIEWGATRIK--IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
+ TG V+++++ K I++E + + ++ N++ L + +++ +YL
Sbjct: 42 VATGQEVAIRQMNLQQQPKKELIINEILV-MRENKNPNIVNYLDSYLVGDELWVVMEYLA 100
Query: 525 NGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
G+L++ + T D + + L FLH + + H D+K+ NI+ + L
Sbjct: 101 GGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKL 157
Query: 584 AEFGF 588
+FGF
Sbjct: 158 TDFGF 162
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-----RTKRDWAAKYKIVL 546
I + ++H N++ L + YL+ + G L ++I T+RD + +++
Sbjct: 67 IAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDAS---RLIF 123
Query: 547 GVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGF 588
V + +LH I H DLK N+++ DE+ + +++FG
Sbjct: 124 QVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGL 165
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 467 LPTGITVSVKKIEWGATRIK--IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
+ TG V+++++ K I++E + + ++ N++ L + +++ +YL
Sbjct: 42 VATGQEVAIRQMNLQQQPKKELIINEILV-MRENKNPNIVNYLDSYLVGDELWVVMEYLA 100
Query: 525 NGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
G+L++ + T D + + L FLH + + H D+K+ NI+ + L
Sbjct: 101 GGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKL 157
Query: 584 AEFGF 588
+FGF
Sbjct: 158 TDFGF 162
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV------ 78
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 79 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 330 SGTVPESLVQLPSLEILFIWNNYFSGSLPENL 361
P L P LE L + NN + LP L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV------ 78
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 79 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 330 SGTVPESLVQLPSLEILFIWNNYFSGSLPENL 361
P L P LE L + NN + LP L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|F Chain F, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 305
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 488 VSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPNG--NLSEKIRTKR-DWAAKY 542
V + I + +RHKN+I+L+ YN + + Y++ +Y G + + + KR +
Sbjct: 53 VKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAH 112
Query: 543 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 575
+ GL +LH I H D+K N++
Sbjct: 113 GYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLL 142
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV------ 78
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 79 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 330 SGTVPESLVQLPSLEILFIWNNYFSGSLPENL 361
P L P LE L + NN + LP L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 64 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 124 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 157
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 492 ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-----RTKRDWAAKYKIVL 546
I + ++H N++ L + YL+ + G L ++I T+RD + +++
Sbjct: 67 IAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDAS---RLIF 123
Query: 547 GVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGF 588
V + +LH I H DLK N+++ DE+ + +++FG
Sbjct: 124 QVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGL 165
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 64 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 124 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 157
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 467 LPTGITVSVKKIEWGATRIK--IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
+ TG V+++++ K I++E + + ++ N++ L + +++ +YL
Sbjct: 42 VATGQEVAIRQMNLQQQPKKELIINEILV-MRENKNPNIVNYLDSYLVGDELWVVMEYLA 100
Query: 525 NGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
G+L++ + T D + + L FLH + + H D+K+ NI+ + L
Sbjct: 101 GGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKL 157
Query: 584 AEFGF 588
+FGF
Sbjct: 158 TDFGF 162
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 64 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 124 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 157
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV------ 78
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 79 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 330 SGTVPESLVQLPSLEILFIWNNYFSGSLPENL 361
P L P LE L + NN + LP L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
pdb|2ZOQ|B Chain B, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
Length = 382
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 153 ILRGLKYIHS---ANVLHRDLKPSNLLINTTCDLKICDFG---LARIADPEHDHTGFLTE 206
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+A W + E N+ +D++ G I+ E+L+N
Sbjct: 207 XVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSN 244
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 31/257 (12%)
Query: 465 AVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
AVL + + +K + ++SE +H+N++ LLG C + ++ +Y
Sbjct: 67 AVLKVAVKM-LKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCC 125
Query: 525 NGNLSEKIRTKRDWAAKYK------------IVLGVARGLCFL-HHDCYPAIPHGDLKAS 571
G+L +R K + + VA+G+ FL +C H D+ A
Sbjct: 126 YGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFLASKNCI----HRDVAAR 181
Query: 572 NIVFDENMEPHLAEFGFKY-----LTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGF 626
N++ + +FG + G+ + W ++ + + DV+ +
Sbjct: 182 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVY-TVQSDVWSY 240
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTR 686
G ++ EI + G L L N L+ + Y + + K + + C
Sbjct: 241 GILLWEIFSLG-LNPYPGILVNSKFYKLVKDGYQMAQPAFAP------KNIYSIMQACWA 293
Query: 687 STPSDRPSMEEALKLLS 703
P+ RP+ ++ L
Sbjct: 294 LEPTHRPTFQQICSFLQ 310
>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|C Chain C, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 364
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 137 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLXE 190
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 191 XVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 250
Query: 658 MYNEN 662
E+
Sbjct: 251 PSQED 255
>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2
Length = 365
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 138 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLXE 191
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 192 XVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 251
Query: 658 MYNEN 662
E+
Sbjct: 252 PSQED 256
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 34/227 (14%)
Query: 499 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR------------DWAAKYKIVL 546
+H+N++ LLG C + ++ +Y G+L +R K + A + +L
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLL 167
Query: 547 ----GVARGLCFL-HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY-----LTQLAD 596
VA+G+ FL +C H D+ A N++ + +FG +
Sbjct: 168 HFSSQVAQGMAFLASKNCI----HRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 223
Query: 597 GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG 656
G+ + W ++ + + DV+ +G ++ EI + G L L N L+
Sbjct: 224 GNARLPVKWMAPESIFDCVY-TVQSDVWSYGILLWEIFSLG-LNPYPGILVNSKFYKLVK 281
Query: 657 EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 703
+ Y + + K + + C P+ RP+ ++ L
Sbjct: 282 DGYQMAQPAFAP------KNIYSIMQACWALEPTHRPTFQQICSFLQ 322
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV------ 78
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 79 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 330 SGTVPESLVQLPSLEILFIWNNYFSGSLPENL 361
P L P LE L + NN + LP L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 550 RGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 588
RGL ++H + H DLK SN++ +EN E + +FG
Sbjct: 169 RGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGM 204
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 550 RGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY--LTQLADGSF----PAKI 603
RGL ++H + H DLK SN++ +EN E + +FG T A+ +
Sbjct: 170 RGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVAT 226
Query: 604 AWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRL 639
W + E ++ E +D++ G I E+L +L
Sbjct: 227 RWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQL 263
>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX
Length = 358
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 131 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 184
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 185 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 244
Query: 658 MYNEN 662
E+
Sbjct: 245 PSQED 249
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 64 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 124 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 157
>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2
Length = 364
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 137 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 190
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 191 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 250
Query: 658 MYNEN 662
E+
Sbjct: 251 PSQED 255
>pdb|2VWB|A Chain A, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis.
pdb|2VWB|B Chain B, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis
Length = 535
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 563 IPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS------FPAKIAWTESGEFYNAMK 616
+ H DL SN +FD+++ ++ +FG ++ L + F + T +F +
Sbjct: 447 VIHNDLTTSNFIFDKDL--YIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWE 504
Query: 617 E--EMYMDVYGFGEIILEILTN 636
E Y VY EIILE++ +
Sbjct: 505 RFLEGYKSVYDRWEIILELMKD 526
>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed
With A Specific Inhibitor Of Human P38 Map Kinase
Length = 380
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 153 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTXDLKICDFG---LARVADPDHDHTGFLTE 206
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 207 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 266
Query: 658 MYNEN 662
E+
Sbjct: 267 PSQED 271
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 26 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV------ 79
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 80 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 330 SGTVPESLVQLPSLEILFIWNNYFS 354
P L P LE L + NN +
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75
pdb|4FV1|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek4
pdb|4FV2|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek5
pdb|4FV3|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek6
pdb|4FV4|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek7
pdb|4FV5|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek9
pdb|4FV8|A Chain A, Crystal Structure Of The Erk2 Complexed With E63
pdb|4FV9|A Chain A, Crystal Structure Of The Erk2 Complexed With E71
pdb|4G6N|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 133 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTXDLKICDFG---LARVADPDHDHTGFLTE 186
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 187 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 246
Query: 658 MYNEN 662
E+
Sbjct: 247 PSQED 251
>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|D Chain D, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 135 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 188
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 189 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 248
Query: 658 MYNEN 662
E+
Sbjct: 249 PSQED 253
>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4FMQ|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 135 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 188
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 189 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 248
Query: 658 MYNEN 662
E+
Sbjct: 249 PSQED 253
>pdb|3ENH|A Chain A, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|B Chain B, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3EN9|A Chain A, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
pdb|3EN9|B Chain B, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
Length = 540
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 563 IPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS------FPAKIAWTESGEFYNAMK 616
+ H DL SN +FD+++ ++ +FG ++ L + F + T +F +
Sbjct: 452 VIHNDLTTSNFIFDKDL--YIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWE 509
Query: 617 E--EMYMDVYGFGEIILEILTN 636
E Y VY EIILE++ +
Sbjct: 510 RFLEGYKSVYDRWEIILELMKD 531
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 64 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 124 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 157
>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|3QYZ|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|4GT3|A Chain A, Atp-Bound Form Of The Erk2 Kinase
pdb|4GVA|A Chain A, Adp-Bound Form Of The Erk2 Kinase
Length = 364
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 137 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTXDLKICDFG---LARVADPDHDHTGFLTE 190
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+A W + E N+ +D++ G I+ E+L+N
Sbjct: 191 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSN 228
>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57
Length = 360
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 133 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 186
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 187 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 246
Query: 658 MYNEN 662
E+
Sbjct: 247 PSQED 251
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 64 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 124 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 157
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e)
Length = 358
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 131 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 184
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 185 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 244
Query: 658 MYNEN 662
E+
Sbjct: 245 PEQED 249
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 24/183 (13%)
Query: 471 ITVSVKKIEWGATRIKIVSEFITRIGTVRHK----NLIRLLGFCYNRHQAYLLYDYLPNG 526
I V++K ++ G K +E + R + H+ ++RL+G C L+ + G
Sbjct: 38 IDVAIKVLKQGTE--KADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGG 94
Query: 527 NLSEKIRTKRDW---AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 583
L + + KR+ + +++ V+ G+ +L + H DL A N++ +
Sbjct: 95 PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFV---HRDLAARNVLLVNRHYAKI 151
Query: 584 AEFGF--------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 635
++FG Y T + G +P K W + E N K DV+ +G + E L+
Sbjct: 152 SDFGLSKALGADDSYYTARSAGKWPLK--WY-APECINFRKFSSRSDVWSYGVTMWEALS 208
Query: 636 NGR 638
G+
Sbjct: 209 YGQ 211
>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine
Mutation At Position 52
Length = 364
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 137 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 190
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 191 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 250
Query: 658 MYNEN 662
E+
Sbjct: 251 PSQED 255
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94
pdb|4G6O|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 133 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTXDLKICDFG---LARVADPDHDHTGFLTE 186
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+A W + E N+ +D++ G I+ E+L+N
Sbjct: 187 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSN 224
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 63 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 123 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 156
>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 365
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 138 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 191
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 192 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 251
Query: 658 MYNEN 662
E+
Sbjct: 252 PSQED 256
>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In
Complex With
(4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin
2-Yl]amino}phenyl)acetic Acid
Length = 366
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 139 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 192
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 193 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 252
Query: 658 MYNEN 662
E+
Sbjct: 253 PSQED 257
>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
pdb|3C9W|B Chain B, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
Length = 357
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 130 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 183
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 184 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 243
Query: 658 MYNEN 662
E+
Sbjct: 244 PSQED 248
>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|2FYS|A Chain A, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|1ERK|A Chain A, Structure Of Signal-Regulated Kinase
pdb|3ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2SB220025
pdb|4ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2OLOMOUCINE
pdb|3QYI|A Chain A, Map Kinase Erk2 Complexed With
1,1-Dioxo-2,3-Dihydrothiophen-3-Yl Benzenesulfonate
Length = 364
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 137 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 190
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 191 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 250
Query: 658 MYNEN 662
E+
Sbjct: 251 PSQED 255
>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2
Length = 364
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 137 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTXDLKICDFG---LARVADPDHDHTGFLTE 190
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+A W + E N+ +D++ G I+ E+L+N
Sbjct: 191 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSN 228
>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A
Pyrazolopyridazine Derivative
pdb|3W55|A Chain A, The Structure Of Erk2 In Complex With Fr148083
Length = 368
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 141 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 194
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+A W + E N+ +D++ G I+ E+L+N
Sbjct: 195 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSN 232
>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule
Inhibitor
Length = 368
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 133 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 186
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+A W + E N+ +D++ G I+ E+L+N
Sbjct: 187 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSN 224
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 62 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 121
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 122 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 155
>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With
N,n-dimethyl-4-(4-
Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide
pdb|2OJI|A Chain A, Crystal Structure Of Erk2 In Complex With
N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2OJJ|A Chain A, Crystal Structure Of Erk2 In Complex With (S)-N-(1-(3-
Chloro-4-Fluorophenyl)-2-Hydroxyethyl)-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|3I5Z|A Chain A, Crystal Structure Of Erk2 Bound To
(S)-N-(2-Hydroxy-1-Phenylethyl)-4-
(5-Methyl-2-(Phenylamino)pyrimidin-4-Yl)-1h-Pyrrole-2-
Carboxamide
pdb|3I60|A Chain A, Crystal Structure Of Erk2 Bound To
(s)-4-(2-(2-chlorophenylamino)-5-
Methylpyrimidin-4-yl)-n-(2-hydroxy-1-phenylethyl)-1h-
pyrrole-2- Carboxamide
Length = 380
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 153 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG---LARVADPDHDHTGFLTE 206
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGE 657
+A W + E N+ +D++ G I+ E+L+N + L Q I G+LG
Sbjct: 207 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 266
Query: 658 MYNEN 662
E+
Sbjct: 267 PSQED 271
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV------ 78
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 79 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 330 SGTVPESLVQLPSLEILFIWNN 351
P L P LE L + NN
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANN 158
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 498 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH 557
++H N++RL YL++D + G L E I R++ ++ + + L + H
Sbjct: 78 LKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDI-VAREYYSEADASHCIQQILEAVLH 136
Query: 558 DCYPAIPHGDLKASNIVFDENME---PHLAEFGF 588
+ H DLK N++ ++ LA+FG
Sbjct: 137 CHQMGVVHRDLKPENLLLASKLKGAAVKLADFGL 170
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHH 557
H+N+++ G + YL +Y G L ++I + + G+ +LH
Sbjct: 64 HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHLAEFG----FKY 590
I H D+K N++ DE +++FG F+Y
Sbjct: 124 ---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY 157
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV------ 78
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 79 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 330 SGTVPESLVQLPSLEILFIWNNYFSGSLPENL 361
P L P LE L + NN + LP L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 64/174 (36%), Gaps = 33/174 (18%)
Query: 543 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----- 597
KI L + L L + I H D+K SNI+ D + L +FG QL D
Sbjct: 129 KITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGIS--GQLVDSIAKTR 184
Query: 598 -------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLT----NAGSSL 646
P +I + S + Y+ DV+ G I L L GR N+
Sbjct: 185 DAGCRPYMAPERIDPSASRQGYDVRS-----DVWSLG-ITLYELATGRFPYPKWNSVFDQ 238
Query: 647 QNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 700
+ + G ++ N E S S ++ LC S RP +E LK
Sbjct: 239 LTQVVKGDPPQLSNSEEREFSPSF-------INFVNLCLTKDESKRPKYKELLK 285
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 32/214 (14%)
Query: 500 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI--RTKRDWAAKYKIVLGVARGLCFLHH 557
H N+++L F ++ YL+ + G L ++I R K I+ V G +LH
Sbjct: 63 HPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAAVIMKQVLSGTTYLHK 122
Query: 558 DCYPAIPHGDLKASNIVFDENMEPHL---AEFGFKYLTQLADGSFPAKI--AWTESGEFY 612
I H DLK N++ + L +FG ++ G ++ A+ + E
Sbjct: 123 ---HNIVHRDLKPENLLLESKSRDALIKIVDFGLSAHFEVG-GKMKERLGTAYYIAPEVL 178
Query: 613 NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS---- 668
+E DV+ G +IL IL G G + Q E+ E G S
Sbjct: 179 RKKYDEK-CDVWSCG-VILYILLCGYPPFGGQTDQ---------EILKRVEKGKFSFDPP 227
Query: 669 ---SLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 699
+ DE K + V L+ T PS R S EEAL
Sbjct: 228 DWTQVSDEAKQL--VKLMLTYE-PSKRISAEEAL 258
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 544 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 587
I+ + +GL +LH + H D+KA+N++ E + LA+FG
Sbjct: 121 ILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFG 161
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 517 YLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 576
+L+ DY+ G L + ++R+ ++++ + V + L H I + D+K NI+ D
Sbjct: 135 HLILDYINGGELFTHL-SQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLD 193
Query: 577 ENMEPHLAEFGF 588
N L +FG
Sbjct: 194 SNGHVVLTDFGL 205
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV------ 78
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 79 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 330 SGTVPESLVQLPSLEILFIWNNYFSGSLPENL 361
P L P LE L + NN + LP L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol
pdb|4FUY|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek2
pdb|4FV0|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek3
Length = 360
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 133 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTXDLKIXDFG---LARVADPDHDHTGFLTE 186
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+A W + E N+ +D++ G I+ E+L+N
Sbjct: 187 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSN 224
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 31/257 (12%)
Query: 465 AVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 524
AVL + + +K + ++SE +H+N++ LLG C + ++ +Y
Sbjct: 75 AVLKVAVKM-LKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCC 133
Query: 525 NGNLSEKIRTKRDWAAKYK------------IVLGVARGLCFL-HHDCYPAIPHGDLKAS 571
G+L +R K + + VA+G+ FL +C H D+ A
Sbjct: 134 YGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFLASKNCI----HRDVAAR 189
Query: 572 NIVFDENMEPHLAEFGFKY-----LTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGF 626
N++ + +FG + G+ + W ++ + + DV+ +
Sbjct: 190 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVY-TVQSDVWSY 248
Query: 627 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTR 686
G ++ EI + G L L N L+ + Y + + K + + C
Sbjct: 249 GILLWEIFSLG-LNPYPGILVNSKFYKLVKDGYQMAQPAFAP------KNIYSIMQACWA 301
Query: 687 STPSDRPSMEEALKLLS 703
P+ RP+ ++ L
Sbjct: 302 LEPTHRPTFQQICSFLQ 318
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 213 IPAELGMLKTVTHME--IGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 269
+P +L T+ H+ + Y F + P+ + ++ + G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV------ 78
Query: 270 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 329
L +L L NQL +P + L LD+S NRL+ + L L+ L L NE+
Sbjct: 79 -LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 330 SGTVPESLVQLPSLEILFIWNNYFSGSLPENL 361
P L P LE L + NN + LP L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 548 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------GSFPA 601
+ RGL ++H + H DLK SN++ + + + +FG L ++AD G
Sbjct: 135 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTSDLKICDFG---LARVADPDHDHTGFLTE 188
Query: 602 KIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEILTN 636
+A W + E N+ +D++ G I+ E+L+N
Sbjct: 189 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSN 226
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 495 IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK-YKIVLG-VARGL 552
+ V H +++L + YL+ D+L G+L ++ + + + K L +A GL
Sbjct: 84 LADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGL 143
Query: 553 CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT---QLADGSFPAKIAWTESG 609
LH I + DLK NI+ DE L +FG + SF + + +
Sbjct: 144 DHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYM-AP 199
Query: 610 EFYNAMKEEMYMDVYGFGEIILEILT 635
E N D + +G ++ E+LT
Sbjct: 200 EVVNRQGHSHSADWWSYGVLMFEMLT 225
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 50/244 (20%)
Query: 174 HLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE-LGMLKT-------VTH 225
++K L+L+G+ S + F LE L+L+ N+L + + E L L+T V
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94
Query: 226 MEIG------------------------YNFYQGNIPWQL------GNMSEVQYLDIAGA 255
+ +G N Y N + G S VQYLD+
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 256 NLSGSIPKELS----NLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE 311
+ EL+ L L + F + GQV + LK+LDLS N+L+ PE
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-----AKLKTLDLSSNKLAFMGPE 209
Query: 312 SFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF-SGSLPENLGRNSKLRWV 370
F + +SL N++ + ++L +LE + N F G+L + +N +++ V
Sbjct: 210 -FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 371 DVST 374
T
Sbjct: 268 AKQT 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,521,866
Number of Sequences: 62578
Number of extensions: 926565
Number of successful extensions: 3819
Number of sequences better than 100.0: 781
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 594
Number of HSP's that attempted gapping in prelim test: 2553
Number of HSP's gapped (non-prelim): 1022
length of query: 710
length of database: 14,973,337
effective HSP length: 106
effective length of query: 604
effective length of database: 8,340,069
effective search space: 5037401676
effective search space used: 5037401676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)